chromosome1 GeneDB Contig 1 5579133 . + . Sequence chromosome1 ; Alias chromosome1
chromosome1 GeneDB source 1 5579133 . + . source chromosome1 ; systematic_id "chromosome1" ; origid "chromosome1" ; chromosome "1" ; so_type "chromosome" ;
chromosome1 GeneDB misc_feature 85676 85681 . - . misc_feature SPAC1F8.02c ; algorithm "DGPI v2.04" ; colour "" ; coord "200,201" ; type "GPI-Anchor" ; cleavage "1.5480001" ; note "GPI-Anchor Signal predicted for SPAC1F8.02c by DGPI v2.04 with cleavage site probability 1.5480001 near 202" ;
chromosome1 GeneDB misc_feature 179497 179502 . + . misc_feature SPAC13G6.03 ; algorithm "DGPI v2.04" ; colour "" ; coord "736,737" ; type "GPI-Anchor" ; cleavage "0.684" ; note "GPI-Anchor Signal predicted for SPAC13G6.03 by DGPI v2.04 with cleavage site probability 0.684 near 736" ;
chromosome1 GeneDB misc_feature 276472 276477 . + . misc_feature SPAC1F5.08c ; algorithm "DGPI v2.04" ; colour "" ; coord "462,463" ; type "GPI-Anchor" ; cleavage "1.72" ; note "GPI-Anchor Signal predicted for SPAC1F5.08c by DGPI v2.04 with cleavage site probability 1.72 near 462" ;
chromosome1 GeneDB misc_feature 1188382 1188387 . - . misc_feature SPAC22A12.17c ; algorithm "DGPI v2.04" ; colour "" ; coord "242,243" ; type "GPI-Anchor" ; cleavage "0.702" ; note "GPI-Anchor Signal predicted for SPAC22A12.17c by DGPI v2.04 with cleavage site probability 0.702 near 241" ;
chromosome1 GeneDB misc_feature 1570067 1570072 . - . misc_feature SPAC1705.03c ; algorithm "DGPI v2.04" ; colour "" ; coord "397,398" ; type "GPI-Anchor" ; cleavage "3.7410002" ; note "GPI-Anchor Signal predicted for SPAC1705.03c by DGPI v2.04 with cleavage site probability 3.7410002 near 397" ;
chromosome1 GeneDB misc_feature 1757751 1757756 . - . misc_feature SPAC17A5.04c ; algorithm "DGPI v2.04" ; colour "" ; coord "483,484" ; type "GPI-Anchor" ; cleavage "3.7410002" ; note "GPI-Anchor Signal predicted for SPAC17A5.04c by DGPI v2.04 with cleavage site probability 3.7410002 near 484" ;
chromosome1 GeneDB misc_feature 1928114 1928119 . - . misc_feature SPAP14E8.05c ; algorithm "DGPI v2.04" ; colour "" ; coord "69,70" ; type "GPI-Anchor" ; cleavage "2.1199" ; note "GPI-Anchor Signal predicted for SPAP14E8.05c by DGPI v2.04 with cleavage site probability 2.1199 near 69" ;
chromosome1 GeneDB misc_feature 1967496 1967501 . + . misc_feature SPAC3H1.14 ; algorithm "DGPI v2.04" ; colour "" ; coord "159,160" ; type "GPI-Anchor" ; cleavage "0.1462" ; note "GPI-Anchor Signal predicted for SPAC3H1.14 by DGPI v2.04 with cleavage site probability 0.1462 near 159" ;
chromosome1 GeneDB misc_feature 2019296 2019301 . + . misc_feature SPAC17H9.08 ; algorithm "DGPI v2.04" ; colour "" ; coord "310,311" ; type "GPI-Anchor" ; cleavage "0.172" ; note "GPI-Anchor Signal predicted for SPAC17H9.08 by DGPI v2.04 with cleavage site probability 0.172 near 310" ;
chromosome1 GeneDB misc_feature 2345748 2345753 . + . misc_feature SPAC17G8.02 ; algorithm "DGPI v2.04" ; colour "" ; coord "312,313" ; type "GPI-Anchor" ; cleavage "0.10399999" ; note "GPI-Anchor Signal predicted for SPAC17G8.02 by DGPI v2.04 with cleavage site probability 0.10399999 near 312" ;
chromosome1 GeneDB misc_feature 2348857 2348862 . - . misc_feature SPAC17G8.04c ; algorithm "DGPI v2.04" ; colour "" ; coord "137,138" ; type "GPI-Anchor" ; cleavage "0.172" ; note "GPI-Anchor Signal predicted for SPAC17G8.04c by DGPI v2.04 with cleavage site probability 0.172 near 124" ;
chromosome1 GeneDB misc_feature 2460415 2460420 . - . misc_feature SPAC19A8.14 ; algorithm "DGPI v2.04" ; colour "" ; coord "180,181" ; type "GPI-Anchor" ; cleavage "1.044" ; note "GPI-Anchor Signal predicted for SPAC19A8.14 by DGPI v2.04 with cleavage site probability 1.044 near 181" ;
chromosome1 GeneDB misc_feature 2546637 2546642 . + . misc_feature SPAC4A8.04 ; algorithm "DGPI v2.04" ; colour "" ; coord "430,431" ; type "GPI-Anchor" ; cleavage "1.5480001" ; note "GPI-Anchor Signal predicted for SPAC4A8.04 by DGPI v2.04 with cleavage site probability 1.5480001 near 430" ;
chromosome1 GeneDB misc_feature 2722037 2722042 . + . misc_feature SPAPB2B4.05 ; algorithm "DGPI v2.04" ; colour "" ; coord "362,363" ; type "GPI-Anchor" ; cleavage "3.7410002" ; note "GPI-Anchor Signal predicted for SPAPB2B4.05 by DGPI v2.04 with cleavage site probability 3.7410002 near 363" ;
chromosome1 GeneDB misc_feature 2740797 2740802 . + . misc_feature SPAC6F6.05 ; algorithm "DGPI v2.04" ; colour "" ; coord "87,88" ; type "GPI-Anchor" ; cleavage "2.4940002" ; note "GPI-Anchor Signal predicted for SPAC6F6.05 by DGPI v2.04 with cleavage site probability 2.4940002 near 87" ;
chromosome1 GeneDB misc_feature 2880300 2880305 . + . misc_feature SPACUNK4.16c ; algorithm "DGPI v2.04" ; colour "" ; coord "928,929" ; type "GPI-Anchor" ; cleavage "2.1199" ; note "GPI-Anchor Signal predicted for SPACUNK4.16c by DGPI v2.04 with cleavage site probability 2.1199 near 928" ;
chromosome1 GeneDB misc_feature 2956172 2956177 . - . misc_feature SPAPB24D3.06c ; algorithm "DGPI v2.04" ; colour "" ; coord "280,281" ; type "GPI-Anchor" ; cleavage "0.172" ; note "GPI-Anchor Signal predicted for SPAPB24D3.06c by DGPI v2.04 with cleavage site probability 0.172 near 289" ;
chromosome1 GeneDB misc_feature 3036739 3036744 . + . misc_feature SPAC1786.02 ; algorithm "DGPI v2.04" ; colour "" ; coord "620,621" ; type "GPI-Anchor" ; cleavage "3.7410002" ; note "GPI-Anchor Signal predicted for SPAC1786.02 by DGPI v2.04 with cleavage site probability 3.7410002 near 620" ;
chromosome1 GeneDB misc_feature 3334175 3334180 . + . misc_feature SPAC26A3.01 ; algorithm "DGPI v2.04" ; colour "" ; coord "503,504" ; type "GPI-Anchor" ; cleavage "0.75399995" ; note "GPI-Anchor Signal predicted for SPAC26A3.01 by DGPI v2.04 with cleavage site probability 0.75399995 near 503" ;
chromosome1 GeneDB misc_feature 3937625 3937630 . + . misc_feature SPAC2F3.08 ; algorithm "DGPI v2.04" ; colour "" ; coord "525,526" ; type "GPI-Anchor" ; cleavage "0.11019999" ; note "GPI-Anchor Signal predicted for SPAC2F3.08 by DGPI v2.04 with cleavage site probability 0.11019999 near 524" ;
chromosome1 GeneDB misc_feature 3982777 3982782 . - . misc_feature SPAPB18E9.04c ; algorithm "DGPI v2.04" ; colour "" ; coord "775,776" ; type "GPI-Anchor" ; cleavage "3.7410002" ; note "GPI-Anchor Signal predicted for SPAPB18E9.04c by DGPI v2.04 with cleavage site probability 3.7410002 near 775" ;
chromosome1 GeneDB misc_feature 3987314 3987319 . - . misc_feature SPAPB15E9.01c ; algorithm "DGPI v2.04" ; colour "" ; coord "1011,1012" ; type "GPI-Anchor" ; cleavage "2.3220003" ; note "GPI-Anchor Signal predicted for SPAPB15E9.01c by DGPI v2.04 with cleavage site probability 2.3220003 near 1011" ;
chromosome1 GeneDB misc_feature 4009654 4009659 . - . misc_feature SPAC27E2.11c ; algorithm "DGPI v2.04" ; colour "" ; coord "54,55" ; type "GPI-Anchor" ; cleavage "3.7410002" ; note "GPI-Anchor Signal predicted for SPAC27E2.11c by DGPI v2.04 with cleavage site probability 3.7410002 near 54" ;
chromosome1 GeneDB misc_feature 4079007 4079012 . - . misc_feature SPAC19G12.16c ; algorithm "DGPI v2.04" ; colour "" ; coord "647,648" ; type "GPI-Anchor" ; cleavage "1.3158001" ; note "GPI-Anchor Signal predicted for SPAC19G12.16c by DGPI v2.04 with cleavage site probability 1.3158001 near 647" ;
chromosome1 GeneDB misc_feature 4326560 4326565 . - . misc_feature SPAC27F1.10 ; algorithm "DGPI v2.04" ; colour "" ; coord "77,78" ; type "GPI-Anchor" ; cleavage "0.15079999" ; note "GPI-Anchor Signal predicted for SPAC27F1.10 by DGPI v2.04 with cleavage site probability 0.15079999 near 77" ;
chromosome1 GeneDB misc_feature 4330370 4330375 . + . misc_feature SPAC27F1.07 ; algorithm "DGPI v2.04" ; colour "" ; coord "423,424" ; type "GPI-Anchor" ; cleavage "3.7410002" ; note "GPI-Anchor Signal predicted for SPAC27F1.07 by DGPI v2.04 with cleavage site probability 3.7410002 near 422" ;
chromosome1 GeneDB misc_feature 4373332 4373337 . - . misc_feature SPAC23D3.14c ; algorithm "DGPI v2.04" ; colour "" ; coord "551,552" ; type "GPI-Anchor" ; cleavage "0.12900001" ; note "GPI-Anchor Signal predicted for SPAC23D3.14c by DGPI v2.04 with cleavage site probability 0.12900001 near 551" ;
chromosome1 GeneDB misc_feature 4726615 4726620 . + . misc_feature SPAC17D4.02 ; algorithm "DGPI v2.04" ; colour "" ; coord "605,606" ; type "GPI-Anchor" ; cleavage "0.30960003" ; note "GPI-Anchor Signal predicted for SPAC17D4.02 by DGPI v2.04 with cleavage site probability 0.30960003 near 605" ;
chromosome1 GeneDB misc_feature 4774955 4774960 . - . misc_feature SPAC1782.12c ; algorithm "DGPI v2.04" ; colour "" ; coord "79,80" ; type "GPI-Anchor" ; cleavage "0.344" ; note "GPI-Anchor Signal predicted for SPAC1782.12c by DGPI v2.04 with cleavage site probability 0.344 near 79" ;
chromosome1 GeneDB misc_feature 4878903 4878908 . - . misc_feature SPAC19B12.02c ; algorithm "DGPI v2.04" ; colour "" ; coord "516,517" ; type "GPI-Anchor" ; cleavage "2.5800002" ; note "GPI-Anchor Signal predicted for SPAC19B12.02c by DGPI v2.04 with cleavage site probability 2.5800002 near 515" ;
chromosome1 GeneDB misc_feature 5221573 5221578 . - . misc_feature SPAC19D5.10c ; algorithm "DGPI v2.04" ; colour "" ; coord "48,49" ; type "GPI-Anchor" ; cleavage "0.15079999" ; note "GPI-Anchor Signal predicted for SPAC19D5.10c by DGPI v2.04 with cleavage site probability 0.15079999 near 48" ;
chromosome1 GeneDB misc_feature 5307140 5307145 . - . misc_feature SPAC11E3.13c ; algorithm "DGPI v2.04" ; colour "" ; coord "485,486" ; type "GPI-Anchor" ; cleavage "3.7410002" ; note "GPI-Anchor Signal predicted for SPAC11E3.13c by DGPI v2.04 with cleavage site probability 3.7410002 near 485" ;
chromosome1 GeneDB misc_feature 5536227 5536232 . + . misc_feature SPAC186.03 ; algorithm "DGPI v2.04" ; colour "" ; coord "344,345" ; type "GPI-Anchor" ; cleavage "0.5814" ; note "GPI-Anchor Signal predicted for SPAC186.03 by DGPI v2.04 with cleavage site probability 0.5814 near 344" ;
chromosome1 GeneDB misc_feature 5575274 5575279 . - . misc_feature SPAC750.07c ; algorithm "DGPI v2.04" ; colour "" ; coord "96,97" ; type "GPI-Anchor" ; cleavage "0.696" ; note "GPI-Anchor Signal predicted for SPAC750.07c by DGPI v2.04 with cleavage site probability 0.696 near 95" ;
chromosome1 GeneDB CDS_parts 1 5662 . - . mRNA SPAC212.11 ; Alias "tlh1" ; systematic_id "SPAC212.11" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally repressed by Chp1; cv=gene_ex; db_xref=PMID:16407326; date=20060327 ||| term=gene expression, transcriptionally repressed by Rik1; cv=gene_ex; db_xref=PMID:16407326; date=20060327 ||| term=gene expression, transcriptionally repressed by Taz1; cv=gene_ex; db_xref=PMID:16407326; date=20060327 ||| term=genome organization, present at telomere ends; db_xref=PMID:15591066; cv=genome_org; date=20060327 ||| term=dh repeats; db_xref=PMID:15591066; date=20060327 ||| term=similar to S. pombe SPBCPT2R1.08c; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070913 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0000781; chromosome, telomeric region
GO:0005634; nucleus
GO:0043140; ATP-dependent 3' to 5' DNA helicase activity
GO:0000722; telomere maintenance via recombination" ; gene "SPAC212.11 ||| tlh1" ; primary_name "tlh1" ; product "RecQ type DNA helicase" ;
chromosome1 GeneDB CDS 1 5662 . - . mRNA SPAC212.11 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5663 7265 . - . mRNA SPAC212.11 ; ID "SPAC212.11" ; db_xref "EMBL:BK005597" ; systematic_id "SPAC212.11" ; gene "SPAC212.11 ||| tlh1" ;
chromosome1 GeneDB CDS_parts 5726 6331 . - . mRNA SPAC212.10 ; systematic_id "SPAC212.10" ; pseudo "_no_value" ; controlled_curation "term=warning, appears to be truncated; date=20091223" ; colour "13" ; gene "SPAC212.10" ; product "pseudogene malic acid transport protein" ; note "removed as part of UTR of SPAC212.11 and truncted with respect to paralogs" ;
chromosome1 GeneDB CDS 5726 6331 . - . mRNA SPAC212.10 ; colour "13" ;
chromosome1 GeneDB repeat_region 6360 6755 . - . repeat_region unknown_1 ; note "duplicated region in pB8E5" ;
chromosome1 GeneDB repeat_region 7548 12710 . + . repeat_region unknown_2 ; note "duplicated region in c794" ;
chromosome1 GeneDB CDS_parts 7619 9274 . + . mRNA SPAC212.09c ; systematic_id "SPAC212.09c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC212.09c" ; product "pseudogene" ; note "malic enzyme with 2 frameshifts" ;
chromosome1 GeneDB CDS 7619 9274 . + . mRNA SPAC212.09c ; colour "13" ;
chromosome1 GeneDB misc_RNA 11027 11556 . - . misc_RNA SPNCRNA.70 ; db_xref "EMBL:AF087836" ; systematic_id "SPNCRNA.70" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AF087836; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AF087836; date=20050412" ; gene "SPNCRNA.70" ; product "non-coding RNA (predicted)" ; note "mRNA from AF087836: not associated with an ORF" ;
chromosome1 GeneDB CDS_parts 12158 12994 . + . mRNA SPAC212.08c ; db_xref "SPD:51/51C03" ; systematic_id "SPAC212.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20100104" ; colour "12" ; GO "GO:0009986; cell surface" ; gene "SPAC212.08c" ; product "GPI anchored protein (predicted)" ;
chromosome1 GeneDB CDS 12158 12994 . + . mRNA SPAC212.08c ; colour "12" ;
chromosome1 GeneDB CDS_parts 13665 14555 . + . mRNA SPAC212.07c ; systematic_id "SPAC212.07c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC212.07c" ; product "pseudogene" ;
chromosome1 GeneDB CDS 13665 14555 . + . mRNA SPAC212.07c ; colour "13" ;
chromosome1 GeneDB repeat_region 15829 22113 . + . repeat_region unknown_3 ; note "duplicated region in c750" ;
chromosome1 GeneDB CDS_parts 15993 16226 . + . mRNA SPAC212.12 ; db_xref "PMID:18488015" ; synonym "SPNG7" ; systematic_id "SPAC212.12" ; pseudo "_no_value" ; colour "13" ; gene "SPAC212.12 ||| SPNG7" ; product "pseudogene" ; note "duplicated open reading frame with truncated N- term" ;
chromosome1 GeneDB CDS 15993 16226 . + . mRNA SPAC212.12 ; colour "13" ;
chromosome1 GeneDB CDS_parts 18042 18557 . + . mRNA SPAC212.06c ; systematic_id "SPAC212.06c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC212.06c" ; product "pseudogene" ; note "term=truncated C terminal of DNA helicase in rearranged telomeric region" ;
chromosome1 GeneDB CDS 18042 18306 . + . mRNA SPAC212.06c ; colour "13" ;
chromosome1 GeneDB CDS 18349 18557 . + . mRNA SPAC212.06c ; colour "13" ;
chromosome1 GeneDB misc_feature 18307 18312 . + . misc_feature unknown_4 ; colour "6" ; note "gtgcat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 18319 18348 . + . misc_feature unknown_5 ; colour "6" ; note "ctaactgtgtttactgctcaagatgctcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 20346 20670 . - . misc_feature unknown_6 ; note "AT rich region where a strand switch between high (G-C)/(G+C) and low (G-C)/(G+C) occurs" ;
chromosome1 GeneDB conflict 20546 20567 . - . conflict unknown_7 ; citation "[1]" ; note "variable number of A's" ;
chromosome1 GeneDB CDS_parts 20824 21015 . + . mRNA SPAC212.05c ; systematic_id "SPAC212.05c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC212.05c" ; product "pseudogene" ; note "term=truncated by rearrangement and LTR ||| fragment similar to hypothetical protein-duplicated in telomeric region" ;
chromosome1 GeneDB CDS 20824 21015 . + . mRNA SPAC212.05c ; colour "13" ;
chromosome1 GeneDB repeat_region 20859 29663 . + . repeat_region unknown_8 ; note "region duplicated in SPAC1348 S. pombe chromosome 1" ;
chromosome1 GeneDB LTR 21035 21329 . + . LTR unknown_9 ; note "540 (-1) 51 354 Tf1-type LTR" ;
chromosome1 GeneDB CDS_parts 21587 22508 . + . mRNA SPAC212.04c ; systematic_id "SPAC212.04c" ; colour "12" ; gene "SPAC212.04c" ; note "repeat expansion SQRSQRS" ; db_xref "SPD:52/52D12" ; GO "GO:0009897; external side of plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; product "S. pombe specific DUF999 family protein 1" ;
chromosome1 GeneDB CDS 21587 22076 . + . mRNA SPAC212.04c ; colour "12" ;
chromosome1 GeneDB CDS 22132 22508 . + . mRNA SPAC212.04c ; colour "12" ;
chromosome1 GeneDB misc_feature 22077 22082 . + . misc_feature unknown_10 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 22115 22131 . + . misc_feature unknown_11 ; colour "6" ; note "ctaatagtttattgtag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 23589 23978 . - . mRNA SPAC212.03 ; db_xref "SPD:41/41B06" ; systematic_id "SPAC212.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPAC212.03" ; product "hypothetical protein" ;
chromosome1 GeneDB CDS 23589 23978 . - . mRNA SPAC212.03 ; colour "12" ;
chromosome1 GeneDB LTR 24281 24445 . - . LTR unknown_12 ; note "266 (+1) 106 264 Tf1-type LTR" ;
chromosome1 GeneDB LTR 24581 24876 . - . LTR unknown_13 ; note "Tf2-type LTR" ;
chromosome1 GeneDB LTR 25997 26339 . - . LTR unknown_14 ; note "253 (+1) 2 340 Tf1-type LTR" ;
chromosome1 GeneDB CDS_parts 27353 27763 . - . mRNA SPAC212.02 ; db_xref "SPD:41/41B07" ; systematic_id "SPAC212.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC212.02" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 27353 27763 . - . mRNA SPAC212.02 ; colour "8" ;
chromosome1 GeneDB LTR 28124 28480 . + . LTR unknown_15 ; note "524 (-1) 1 354 Tf1-type LTR" ;
chromosome1 GeneDB misc_feature 28397 29661 . - . misc_feature unknown_16 ; note "nominal overlap with cosmid c750" ;
chromosome1 GeneDB CDS_parts 28738 29638 . + . mRNA SPAC212.01c ; systematic_id "SPAC212.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; gene "SPAC212.01c" ; product "S. pombe specific DUF999 family protein 2" ; note "repeat expansion SQRSQRS" ;
chromosome1 GeneDB CDS 28738 29227 . + . mRNA SPAC212.01c ; colour "12" ;
chromosome1 GeneDB CDS 29286 29638 . + . mRNA SPAC212.01c ; colour "12" ;
chromosome1 GeneDB misc_feature 29228 29233 . + . misc_feature unknown_17 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 29269 29285 . + . misc_feature unknown_18 ; colour "6" ; note "ctaataatttaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 29764 30716 . + 2 mRNA SPAC977.01 ; systematic_id "SPAC977.01" ; codon_start "3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=similar to S. pombe SPAC750.05C and SPBC1348.02 and SPBPB2B2.19C; date=19700101" ; colour "12" ; gene "SPAC977.01" ; product "S. pombe specific 5Tm protein family" ;
chromosome1 GeneDB CDS 29764 30716 . + 2 mRNA SPAC977.01 ; colour "12" ;
chromosome1 GeneDB repeat_region 31468 32350 . + . repeat_region unknown_19 ; note "duplicated region in cosmid c1952" ;
chromosome1 GeneDB CDS_parts 32230 32670 . + . mRNA SPAC977.02 ; db_xref "SPD:51/51B03" ; systematic_id "SPAC977.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101" ; colour "12" ; gene "SPAC977.02" ; product "S. pombe specific 5Tm protein family" ;
chromosome1 GeneDB CDS 32230 32670 . + . mRNA SPAC977.02 ; colour "12" ;
chromosome1 GeneDB LTR 32863 33057 . - . LTR unknown_20 ; note "Tf2-type LTR" ;
chromosome1 GeneDB CDS_parts 33835 34272 . + . mRNA SPAC977.03 ; systematic_id "SPAC977.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC1348.04 and SPAC750.03C; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=warning, possible horizontal transfer; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100902" ; colour "10" ; gene "SPAC977.03" ; product "methyltransferase (predicted)" ;
chromosome1 GeneDB CDS 33835 34272 . + . mRNA SPAC977.03 ; colour "10" ;
chromosome1 GeneDB CDS_parts 34298 34816 . + . mRNA SPAC977.04 ; systematic_id "SPAC977.04" ; pseudo "_no_value" ; colour "13" ; gene "SPAC977.04" ; product "pseudogene" ;
chromosome1 GeneDB CDS 34298 34816 . + . mRNA SPAC977.04 ; colour "13" ;
chromosome1 GeneDB CDS_parts 35768 36382 . - . mRNA SPAC977.05c ; db_xref "SPD:51/51B08" ; systematic_id "SPAC977.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YGL258W and YOR387C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC977.05c" ; product "conserved fungal family" ;
chromosome1 GeneDB CDS 35768 36382 . - . mRNA SPAC977.05c ; colour "10" ;
chromosome1 GeneDB CDS_parts 39431 40050 . + . mRNA SPAC977.06 ; systematic_id "SPAC977.06" ; controlled_curation "term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; gene "SPAC977.06" ; product "S. pombe specific DUF999 family protein 3" ;
chromosome1 GeneDB CDS 39431 39848 . + . mRNA SPAC977.06 ; colour "12" ;
chromosome1 GeneDB CDS 39899 40050 . + . mRNA SPAC977.06 ; colour "12" ;
chromosome1 GeneDB misc_feature 39849 39854 . + . misc_feature unknown_21 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 39882 39898 . + . misc_feature unknown_22 ; colour "6" ; note "ctaataatttaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_RNA 40795 41489 . + . misc_RNA SPNCRNA.136 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.136" ; synonym "SPNG12" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB CDS_parts 42057 43307 . - . mRNA SPAC977.07c ; systematic_id "SPAC977.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=GLEYA domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; colour "10" ; gene "SPAC977.07c" ; product "cell surface glycoprotein (predicted)" ;
chromosome1 GeneDB CDS 42057 43307 . - . mRNA SPAC977.07c ; colour "10" ;
chromosome1 GeneDB repeat_region 43336 43366 . + . repeat_region unknown_23 ; note "(a)31" ;
chromosome1 GeneDB CDS_parts 44704 45414 . + . mRNA SPAC977.08 ; db_xref "SPD:51/51B09" ; systematic_id "SPAC977.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=similar to S. pombe SPBC1348.09; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC977.08" ; product "short chain dehydrogenase (predicted)" ;
chromosome1 GeneDB CDS 44704 45414 . + . mRNA SPAC977.08 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 45875 46074 . - . mRNA SPAC977.09c ; ID "SPAC977.09c" ; db_xref "SPD:51/51E06" ; systematic_id "SPAC977.09c" ; gene "SPAC977.09c" ; note "mRNA from SPD183" ;
chromosome1 GeneDB CDS_parts 46075 48160 . - . mRNA SPAC977.09c ; db_xref "SPD:51/51E06" ; systematic_id "SPAC977.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004620; phospholipase activity
GO:0046475; glycerophospholipid catabolism
GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region" ; gene "SPAC977.09c" ; product "phospholipase (predicted)" ; EC_number "3.1.1.5" ;
chromosome1 GeneDB CDS 46075 46143 . - . mRNA SPAC977.09c ; colour "7" ;
chromosome1 GeneDB CDS 46208 48160 . - . mRNA SPAC977.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 46144 46159 . - . misc_feature unknown_24 ; colour "6" ; note "ctaacttttgttctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 46144 46207 . - . intron SPAC977.09c ; db_xref "SPD:51/51E06" ; systematic_id "SPAC977.09c" ; gene "SPAC977.09c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 46202 46207 . - . misc_feature unknown_25 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 48159 48369 . - . mRNA SPAC977.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC977.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 51158 51583 . + . misc_RNA SPNCRNA.19 ; Alias "prl19" ; db_xref "PMID:12597277 ||| EMBL:AB084831" ; systematic_id "SPNCRNA.19" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl19" ; gene "prl19 ||| SPNCRNA.19" ; product "non-coding RNA, poly(A)-bearing RNA (predicted)" ;
chromosome1 GeneDB 5'-UTR 51988 52116 . + . mRNA SPAC977.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC977.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 52117 53600 . + . mRNA SPAC977.10 ; systematic_id "SPAC977.10" ; colour "2" ; gene "sod2 ||| SPAC977.10" ; Alias "sod2" ; db_xref "SPD:50/50G04" ; GO "GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0005886; plasma membrane
GO:0006883; sodium ion homeostasis
GO:0006814; sodium ion transport
GO:0015385; sodium:hydrogen antiporter activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR138W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1314171; date=20080227 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "sod2" ; product "plasma membrane sodium ion/proton antiporter Sod2" ;
chromosome1 GeneDB CDS 52117 52240 . + . mRNA SPAC977.10 ; colour "2" ;
chromosome1 GeneDB CDS 52318 53600 . + . mRNA SPAC977.10 ; colour "2" ;
chromosome1 GeneDB misc_feature 52241 52246 . + . misc_feature unknown_26 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 52301 52317 . + . misc_feature unknown_27 ; colour "6" ; note "ctaatactagtgtgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 53601 53858 . + . mRNA SPAC977.10 ; Alias "sod2" ; ID "SPAC977.10" ; db_xref "SPD:50/50G04" ; systematic_id "SPAC977.10" ; primary_name "sod2" ; gene "sod2 ||| SPAC977.10" ; note "mRNA from AU010734" ;
chromosome1 GeneDB LTR 54499 54854 . + . LTR unknown_28 ; note "Tf1-type LTR" ;
chromosome1 GeneDB 5'-UTR 55059 55273 . + . mRNA SPAC977.11 ; ID "SPAC977.11" ; systematic_id "SPAC977.11" ; gene "SPAC977.11" ; note "mRNA from AU013094" ;
chromosome1 GeneDB repeat_region 55264 57914 . + . repeat_region unknown_29 ; note "duplicated in pB8B6" ;
chromosome1 GeneDB CDS_parts 55274 56209 . + . mRNA SPAC977.11 ; db_xref "SPD:41/41G12" ; systematic_id "SPAC977.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YOR390W and YPL279C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC977.11" ; product "CRCB domain protein" ;
chromosome1 GeneDB CDS 55274 56209 . + . mRNA SPAC977.11 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 56210 56308 . + . mRNA SPAC977.11 ; ID "SPAC977.11" ; db_xref "SPD:41/41G12" ; systematic_id "SPAC977.11" ; gene "SPAC977.11" ; note "mRNA from AU013226" ;
chromosome1 GeneDB 5'-UTR 56484 56491 . + . mRNA SPAC977.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC977.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 56492 57562 . + . mRNA SPAC977.12 ; db_xref "SPD:51/51C10" ; systematic_id "SPAC977.12" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR155C and YLR157C and YLR158C and YLR160C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006530; asparagine catabolic process
GO:0009986; cell surface" ; gene "SPAC977.12" ; product "L-asparaginase (predicted)" ; EC_number "3.5.1.1" ;
chromosome1 GeneDB CDS 56492 57562 . + . mRNA SPAC977.12 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 57563 57736 . + . mRNA SPAC977.12 ; ID "SPAC977.12" ; db_xref "SPD:51/51C10" ; systematic_id "SPAC977.12" ; gene "SPAC977.12" ; note "mRNA from AU009839" ;
chromosome1 GeneDB CDS_parts 58277 59105 . - . mRNA SPAC977.13c ; systematic_id "SPAC977.13c" ; pseudo "_no_value" ; controlled_curation "term=warning, frameshifted; date=20091223" ; colour "13" ; gene "SPAC977.13c" ; product "hydrolase, pseudogene" ; note "4 frameshifts" ;
chromosome1 GeneDB CDS 58277 59105 . - . mRNA SPAC977.13c ; colour "13" ;
chromosome1 GeneDB repeat_region 59436 59486 . + . repeat_region unknown_30 ; note "(ttattttaagttttgtc)3" ;
chromosome1 GeneDB repeat_region 59604 60792 . - . repeat_region unknown_31 ; note "region duplicated in SPAC750 S. pombe chromosome 1; appears to be pseudo in c750 as CDS has no initiator methionine" ;
chromosome1 GeneDB 3'-UTR 59614 59714 . - . mRNA SPAC977.14c ; ID "SPAC977.14c" ; db_xref "SPD:50/50C02" ; systematic_id "SPAC977.14c" ; gene "SPAC977.14c" ; note "mRNA from AU007498" ;
chromosome1 GeneDB CDS_parts 59715 60770 . - . mRNA SPAC977.14c ; db_xref "SPD:50/50C02" ; systematic_id "SPAC977.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, conserved in Vertebrates; date=20100827" ; colour "10" ; gene "SPAC977.14c" ; product "aldo/keto reductase, unknown biological role" ;
chromosome1 GeneDB CDS 59715 60770 . - . mRNA SPAC977.14c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 60769 60843 . - . mRNA SPAC977.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC977.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 62989 63732 . + . mRNA SPAC977.15 ; db_xref "SPD:41/41E11" ; systematic_id "SPAC977.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL049C; date=19700101 ||| term=human CMBL ortholog; date=20100827 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Vertebrates; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827" ; colour "10" ; gene "SPAC977.15" ; product "dienelactone hydrolase family" ;
chromosome1 GeneDB CDS 62989 63732 . + . mRNA SPAC977.15 ; colour "10" ;
chromosome1 GeneDB CDS_parts 64904 66679 . - . mRNA SPAC977.16c ; systematic_id "SPAC977.16c" ; colour "2" ; gene "dak2 ||| SPAC977.16c" ; Alias "dak2" ; db_xref "SPD:49/49C03" ; GO "GO:0006091; generation of precursor metabolites and energy
GO:0019563; glycerol catabolic process
GO:0004371; glycerone kinase activity
GO:0006071; glycerol metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML070W and YFL053W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=gene expression, regulated by glucose; db_xref=PMID:20396879; date=20100622" ; primary_name "dak2" ; product "dihydroxyacetone kinase Dak2" ; EC_number "2.7.1.29" ;
chromosome1 GeneDB CDS 64904 66679 . - . mRNA SPAC977.16c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 66231 67142 . + . mRNA SPAC977.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC977.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 67143 68939 . + . mRNA SPAC977.17 ; db_xref "SPD:49/49C06" ; systematic_id "SPAC977.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL054C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0055085; transmembrane transport
GO:0016021; integral to membrane
GO:0022857; transmembrane transporter activity" ; colour "7" ; gene "SPAC977.17" ; product "MIP water channel (predicted)" ;
chromosome1 GeneDB CDS 67143 68939 . + . mRNA SPAC977.17 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 68940 69646 . + . mRNA SPAC977.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC977.17" ; systematic_id "SPAC977.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 70476 70578 . + . misc_feature unknown_32 ; note "nominal overlap with PCR product SPAPJ695 and SPAC977" ;
chromosome1 GeneDB misc_RNA 71030 71470 . + . misc_RNA SPNCRNA.137 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.137" ; synonym "SPNG19" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 34 amino acids" ;
chromosome1 GeneDB misc_RNA 71982 72380 . - . misc_RNA SPNCRNA.37 ; Alias "prl37" ; db_xref "EMBL:AB084849 ||| PMID:12597277" ; systematic_id "SPNCRNA.37" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl37" ; gene "prl37 ||| SPNCRNA.37" ; product "non-coding RNA,poly(A)-bearing (predicted)" ;
chromosome1 GeneDB misc_RNA 72344 72414 . + . misc_RNA SPNCRNA.83 ; systematic_id "SPNCRNA.83" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.83" ; product "non-coding RNA (predicted)" ; note "Small duplicated region as identified by independent cDNAs AU009231 cDNA, clone and spc04643 AU009540, clone spc05042, also shows 78/95 (82%)conservation between SPAC4F8 Z98530 S.pombe chromosome I cosmid c4F8, and 84/95 (88%) conservation between MISPLSUR X06597 Fission yeast mtDNA for LSU rRNA gene" ;
chromosome1 GeneDB misc_feature 72415 77577 . + . misc_feature SPLC002 ; db_xref "SO:0000001" ; systematic_id "SPLC002" ; note "low complexity gene-free region ||| contains LTRs" ;
chromosome1 GeneDB LTR 73709 73977 . - . LTR unknown_33 ; note "TF2 type LTR fragment" ;
chromosome1 GeneDB LTR 73945 74282 . + . LTR unknown_34 ; note "TF2 type LTR fragment" ;
chromosome1 GeneDB misc_feature 74419 75925 . + . misc_feature unknown_35 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=low complexity; date=20071010" ; note "this region appears to be actively transcribed at low level ||| SPNG20-21" ;
chromosome1 GeneDB CDS_parts 77578 77931 . - . mRNA SPAPJ695.01c ; systematic_id "SPAPJ695.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20071122 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPAPJ695.01c" ; product "S. pombe specific UPF0321 family protein 3" ;
chromosome1 GeneDB CDS 77578 77931 . - . mRNA SPAPJ695.01c ; colour "12" ;
chromosome1 GeneDB misc_RNA 79209 79317 . + . misc_RNA SPNCRNA.138 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.138" ; synonym "SPNG23" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 14 amino acids" ;
chromosome1 GeneDB misc_RNA 79543 79628 . + . misc_RNA SPNCRNA.76 ; systematic_id "SPNCRNA.76" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.76" ; product "non-coding RNA (predicted)" ; note "Small duplicated region as marked by 2 independent cDNAs AU010317 clone spc05710 and AU007551 clone spc02188, also hits 4376 4461 MISPCG X54421 S. pombe complete mitochondrial genome and MISPRNS X15738 Fission yeast mitDNA for small ribosomal RNA" ;
chromosome1 GeneDB LTR 79680 79768 . - . LTR unknown_36 ; note "fragment" ;
chromosome1 GeneDB misc_feature 80782 80885 . + . misc_feature unknown_37 ; note "nominal overlap with PCR product SPAPJ695 and cosmid SPAC1F8" ;
chromosome1 GeneDB 5'-UTR 82746 82935 . + . mRNA SPAC1F8.01 ; ID "SPAC1F8.01" ; systematic_id "SPAC1F8.01" ; note "mRNA from AF017180" ;
chromosome1 GeneDB CDS_parts 82936 84603 . + . mRNA SPAC1F8.01 ; systematic_id "SPAC1F8.01" ; colour "2" ; db_xref "SPD:45/45E06" ; Alias "ght3" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "ght3" ; product "hexose transporter Ght3" ;
chromosome1 GeneDB CDS 82936 84603 . + . mRNA SPAC1F8.01 ; colour "2" ;
chromosome1 GeneDB CDS_parts 85598 86278 . - . mRNA SPAC1F8.02c ; db_xref "SPD:42/42H09" ; systematic_id "SPAC1F8.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis
GO:0031232; extrinsic to external side of plasma membrane" ; gene "SPAC1F8.02c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 85598 86278 . - . mRNA SPAC1F8.02c ; colour "8" ;
chromosome1 GeneDB CDS_parts 88367 90259 . - . mRNA SPAC1F8.03c ; systematic_id "SPAC1F8.03c" ; colour "2" ; gene "str3 ||| SPAC1F8.03c" ; Alias "str3" ; db_xref "SPD:26/26E04" ; GO "GO:0015343; siderophore-iron transporter activity
GO:0015892; siderophore-iron transport
GO:0006879; iron ion homeostasis
GO:0033214; iron assimilation by chelation and transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL040C and YHL047C and YOL158C and YKR106W and YCL073C and YEL065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "str3" ; product "siderophore-iron transporter Str3" ;
chromosome1 GeneDB CDS 88367 90259 . - . mRNA SPAC1F8.03c ; colour "2" ;
chromosome1 GeneDB misc_RNA 90868 91753 . + . misc_RNA SPNCRNA.139 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.139" ; synonym "SPNG25" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 38 amino acids ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 91915 92479 . - . mRNA SPAC1F8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F8.04c" ; systematic_id "SPAC1F8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 92480 93871 . - . mRNA SPAC1F8.04c ; db_xref "SPD:21/21E05" ; systematic_id "SPAC1F8.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPAC1F8.04c" ; product "hydrolase (predicted)" ;
chromosome1 GeneDB CDS 92480 93871 . - . mRNA SPAC1F8.04c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 95961 95999 . + . mRNA SPAC1F8.05 ; ID "SPAC1F8.05" ; systematic_id "SPAC1F8.05" ; note "mRNA from SPORF1 2 245" ;
chromosome1 GeneDB CDS_parts 96000 96548 . + . mRNA SPAC1F8.05 ; systematic_id "SPAC1F8.05" ; colour "8" ; db_xref "SPD:05/05F01" ; Alias "isp3" ; synonym "meu4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; GO "GO:0031142; induction of conjugation upon nitrogen starvation
GO:0007126; meiosis
GO:0007126; meiosis" ; primary_name "isp3" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 96000 96548 . + . mRNA SPAC1F8.05 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 96549 96966 . + . mRNA SPAC1F8.05 ; ID "SPAC1F8.05" ; db_xref "SPD:05/05F01" ; systematic_id "SPAC1F8.05" ; note "mRNA from SPORF1" ;
chromosome1 GeneDB LTR 98631 98942 . + . LTR unknown_38 ; note "858 (+1) 38 349 TF2" ;
chromosome1 GeneDB LTR 98988 99228 . - . LTR unknown_39 ; note "629 (-1) 28 267 TF1" ;
chromosome1 GeneDB 5'-UTR 99839 100010 . + . mRNA SPAC1F8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 100011 101168 . + . mRNA SPAC1F8.06 ; systematic_id "SPAC1F8.06" ; colour "2" ; gene "fta5 ||| SPAC1F8.06 ||| sma5" ; Alias "fta5" ; db_xref "SPD:18/18C09" ; synonym "sma5" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=GLEYA domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; qualifier=O-linked; cv=pt_mod; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall
GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; primary_name "fta5" ; product "cell surface glycoprotein" ;
chromosome1 GeneDB CDS 100011 101168 . + . mRNA SPAC1F8.06 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 101169 101653 . + . mRNA SPAC1F8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F8.06" ; systematic_id "SPAC1F8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 101715 101759 . - . mRNA SPAC1F8.07c ; ID "SPAC1F8.07c" ; db_xref "SPD:45/45G12" ; systematic_id "SPAC1F8.07c" ; note "mRNA from AU011749" ;
chromosome1 GeneDB CDS_parts 101836 103544 . - . mRNA SPAC1F8.07c ; db_xref "SPD:45/45G12" ; systematic_id "SPAC1F8.07c" ; colour "7" ; GO "GO:0004737; pyruvate decarboxylase activity
GO:0009063; amino acid catabolic process
GO:0044237; cellular metabolic process
GO:0006091; generation of precursor metabolites and energy
GO:0008152; metabolic process
GO:0044238; primary metabolic process
GO:0006090; pyruvate metabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=warning, gene structure updated; db_xref=PMID:16823372; date=20090202" ; gene "SPAC1F8.07c" ; product "pyruvate decarboxylase (predicted)" ; EC_number "4.1.1.1" ;
chromosome1 GeneDB CDS 101836 101869 . - . mRNA SPAC1F8.07c ; colour "7" ;
chromosome1 GeneDB CDS 101872 103544 . - . mRNA SPAC1F8.07c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 103545 103594 . - . mRNA SPAC1F8.07c ; ID "SPAC1F8.07c" ; systematic_id "SPAC1F8.07c" ; gene "SPAC1F8.07c" ; note "mRNA from SPD264" ;
chromosome1 GeneDB CDS_parts 103941 104303 . + . mRNA SPAC1F8.08 ; db_xref "SPD:51/51H03" ; systematic_id "SPAC1F8.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1F8.08" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 103941 104303 . + . mRNA SPAC1F8.08 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 104304 104953 . + . mRNA SPAC1F8.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F8.08" ; systematic_id "SPAC1F8.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 104304 108907 . + . misc_feature SPGF003 ; db_xref "SO:0000001" ; systematic_id "SPGF003" ; note "gene-free region ||| contains LTR(s)" ;
chromosome1 GeneDB LTR 106349 106684 . + . LTR unknown_40 ; note "Tf2 type" ;
chromosome1 GeneDB misc_feature 106965 108668 . + . misc_feature unknown_41 ; db_xref "PMID:18488015" ;
chromosome1 GeneDB misc_feature 107156 107161 . + . misc_feature unknown_42 ; note "nominal overlap between cosmid SPAC11D3 and cosmid SPAC1F8" ;
chromosome1 GeneDB CDS_parts 108908 109147 . - . mRNA SPAC11D3.01c ; db_xref "SPD:01/01B06" ; systematic_id "SPAC11D3.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa conidiation-specific protein 6; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC869.09 and SPAC22G7.11C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC11D3.01c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 108908 109147 . - . mRNA SPAC11D3.01c ; colour "10" ;
chromosome1 GeneDB CDS_parts 109829 110281 . - . mRNA SPAC11D3.02c ; db_xref "SPD:04/04A01" ; systematic_id "SPAC11D3.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible horizontal transfer; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100902" ; colour "10" ; gene "SPAC11D3.02c" ; product "ELLA family acetyltransferase (predicted)" ;
chromosome1 GeneDB CDS 109829 110281 . - . mRNA SPAC11D3.02c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 110280 110455 . - . mRNA SPAC11D3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11D3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 111005 111913 . - . mRNA SPAC11D3.03c ; db_xref "SPD:12/12E07" ; systematic_id "SPAC11D3.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; GO "GO:0045132; meiotic chromosome segregation" ; gene "SPAC11D3.03c" ; product "conserved protein" ; note "bacterial proteins are involved in urea metabolism" ;
chromosome1 GeneDB CDS 111005 111913 . - . mRNA SPAC11D3.03c ; colour "10" ;
chromosome1 GeneDB 3'-UTR 112709 112916 . - . mRNA SPAC11D3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11D3.04c" ; systematic_id "SPAC11D3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 112917 113309 . - . mRNA SPAC11D3.04c ; db_xref "SPD:02/02H09" ; systematic_id "SPAC11D3.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; GO "GO:0009975; cyclase activity" ; gene "SPAC11D3.04c" ; product "SnoaL" ;
chromosome1 GeneDB CDS 112917 113309 . - . mRNA SPAC11D3.04c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 114026 114079 . + . mRNA SPAC11D3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11D3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 114080 115720 . + . mRNA SPAC11D3.05 ; systematic_id "SPAC11D3.05" ; colour "7" ; gene "SPAC11D3.05 ||| mfs2" ; Alias "mfs2" ; db_xref "SPD:45/45E02" ; GO "GO:0005886; plasma membrane
GO:0022857; carrier activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC530.02 and SPCC794.04C; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "mfs2" ; product "MFS family membrane transporter (predicted)" ; reserved_name "mfs2" ;
chromosome1 GeneDB CDS 114080 115720 . + . mRNA SPAC11D3.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 115721 115842 . + . mRNA SPAC11D3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11D3.05" ; systematic_id "SPAC11D3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 116392 116692 . + . mRNA SPAC11D3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11D3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 116693 118060 . + . mRNA SPAC11D3.06 ; db_xref "SPD:21/21B09" ; systematic_id "SPAC11D3.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR338C and YHR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; gene "SPAC11D3.06" ; product "MatE family transporter (predicted)" ;
chromosome1 GeneDB CDS 116693 118060 . + . mRNA SPAC11D3.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 118061 118152 . + . mRNA SPAC11D3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11D3.06" ; systematic_id "SPAC11D3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 118195 120108 . - . mRNA SPAC11D3.07c ; db_xref "SPD:26/26F11" ; systematic_id "SPAC11D3.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; date=20080502" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC11D3.07c" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB CDS 118195 120108 . - . mRNA SPAC11D3.07c ; colour "7" ;
chromosome1 GeneDB CDS_parts 120556 122208 . - . mRNA SPAC11D3.08c ; db_xref "SPD:34/34F10" ; systematic_id "SPAC11D3.08c" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; colour "7" ; gene "SPAC11D3.08c" ; product "amino acid permease, unknown 1 (predicted)" ;
chromosome1 GeneDB CDS 120556 122208 . - . mRNA SPAC11D3.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 122207 123705 . - . mRNA SPAC11D3.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11D3.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 122845 124029 . + . mRNA SPAC11D3.09 ; db_xref "SPD:44/44A01" ; systematic_id "SPAC11D3.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAPB24D3.03 and SPBC8E4.03 (paralog); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAC11D3.09" ; product "agmatinase (predicted)" ; EC_number "3.5.3.11" ;
chromosome1 GeneDB CDS 122845 124029 . + . mRNA SPAC11D3.09 ; colour "7" ;
chromosome1 GeneDB CDS_parts 125582 126886 . + . mRNA SPAC11D3.10 ; db_xref "SPD:22/22F10" ; systematic_id "SPAC11D3.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPCC777.03c (paralog); date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=warning, possible horizontal transfer; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC11D3.10" ; product "nifs homolog, possible cysteine desulfurase" ;
chromosome1 GeneDB CDS 125582 126886 . + . mRNA SPAC11D3.10 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 126951 128024 . - . mRNA SPAC11D3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11D3.11c" ; systematic_id "SPAC11D3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact ||| refined to match gene structure in PMID:21270388" ;
chromosome1 GeneDB CDS_parts 128025 129185 . - . mRNA SPAC11D3.11c ; obsolete_name "SPAC11D3.12c" ; db_xref "SPD:27/27E08" ; systematic_id "SPAC11D3.11c" ; colour "10" ; controlled_curation "term=similar to S. pombe SPCC757.04; date=19700101 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131 ||| term=warning, previously annotated as pseudogene; db_xref=PMID:21270388; date=20110131" ; gene "SPAC11D3.11c" ; product "zinc finger protein, truncated" ;
chromosome1 GeneDB CDS 128025 129059 . - . mRNA SPAC11D3.11c ; colour "10" ;
chromosome1 GeneDB CDS 129103 129127 . - . mRNA SPAC11D3.11c ; colour "10" ;
chromosome1 GeneDB CDS 129172 129185 . - . mRNA SPAC11D3.11c ; colour "10" ;
chromosome1 GeneDB misc_feature 128025 128135 . + . misc_feature unknown_43 ; note "PCR verified framshift in 972h-" ;
chromosome1 GeneDB misc_feature 129060 129075 . - . misc_feature unknown_44 ; colour "2" ; note "splice branch and acceptor sequence, ctaac tacaattaaag" ;
chromosome1 GeneDB misc_feature 129097 129102 . - . misc_feature unknown_45 ; colour "2" ; note "splice donor sequence, gtattc" ;
chromosome1 GeneDB misc_feature 129128 129144 . - . misc_feature unknown_46 ; colour "2" ; note "splice branch and acceptor sequence, tacta accaatatctag" ;
chromosome1 GeneDB misc_feature 129166 129171 . - . misc_feature unknown_47 ; colour "2" ; note "splice donor sequence, gtaagg" ;
chromosome1 GeneDB 5'-UTR 129184 129316 . - . mRNA SPAC11D3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11D3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 130251 130328 . + . mRNA SPAC11D3.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11D3.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 130329 130997 . + . mRNA SPAC11D3.13 ; db_xref "SPD:42/42H01" ; systematic_id "SPAC11D3.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR533C and YPL280W and YOR391C and YMR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC11D3.13" ; product "ThiJ domain protein" ;
chromosome1 GeneDB CDS 130329 130997 . + . mRNA SPAC11D3.13 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 130998 131076 . + . mRNA SPAC11D3.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11D3.13" ; systematic_id "SPAC11D3.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 131241 131318 . - . mRNA SPAC11D3.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11D3.14c" ; systematic_id "SPAC11D3.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 131319 135101 . - . mRNA SPAC11D3.14c ; db_xref "SPD:39/39C08" ; systematic_id "SPAC11D3.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, divergent duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YKL215C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human OPLAH ortholog; date=20100718" ; colour "10" ; gene "SPAC11D3.14c" ; product "oxoprolinase (predicted)" ;
chromosome1 GeneDB CDS 131319 135101 . - . mRNA SPAC11D3.14c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 135100 135695 . - . mRNA SPAC11D3.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11D3.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 135569 135926 . + . misc_RNA SPNCRNA.147 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.147" ; synonym "SPNG30" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; cv=warning; date=20071008 ||| term=warning, signal could be generated by overlap of UTRs; cv=warning; date=20071008" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 0 amino acids ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 136191 136330 . + . mRNA SPAC11D3.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11D3.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 136331 140284 . + . mRNA SPAC11D3.15 ; db_xref "SPD:48/48F05" ; systematic_id "SPAC11D3.15" ; GO "GO:0017168; 5-oxoprolinase (ATP-hydrolizing) activity
GO:0006749; glutathione metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, divergent duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YKL215C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPAC11D3.15" ; product "5-oxoprolinase (ATP-hydrolizing) (predicted)" ;
chromosome1 GeneDB CDS 136331 140284 . + . mRNA SPAC11D3.15 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 140535 140804 . - . mRNA SPAC11D3.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11D3.16c" ; systematic_id "SPAC11D3.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 140805 141200 . - . mRNA SPAC11D3.16c ; db_xref "SPD:02/02H10" ; systematic_id "SPAC11D3.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; GO "GO:0034599; cellular response to oxidative stress" ; colour "8" ; gene "SPAC11D3.16c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 140805 141200 . - . mRNA SPAC11D3.16c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 141199 141580 . - . mRNA SPAC11D3.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11D3.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 142675 144432 . + . mRNA SPAC11D3.17 ; db_xref "SPD:36/36B03" ; systematic_id "SPAC11D3.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC11D3.17" ; product "zf-C2H2 type zinc finger protein" ;
chromosome1 GeneDB CDS 142675 144432 . + . mRNA SPAC11D3.17 ; colour "10" ;
chromosome1 GeneDB CDS_parts 144862 146358 . - . mRNA SPAC11D3.18c ; db_xref "SPD:24/24B10" ; systematic_id "SPAC11D3.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR260W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0015663; nicotinamide mononucleotide permease activity
GO:0035353; nicotinamide mononucleotide transmembrane transport" ; gene "SPAC11D3.18c" ; product "nicotinic acid plasma membrane transporter (predicted)" ;
chromosome1 GeneDB CDS 144862 146358 . - . mRNA SPAC11D3.18c ; colour "7" ;
chromosome1 GeneDB misc_feature 146442 146447 . + . misc_feature unknown_48 ; note "nominal overlap between cosmid SPAC11D3 and cosmid SPAC5H10" ;
chromosome1 GeneDB CDS_parts 146974 147879 . + . mRNA SPAC5H10.01 ; db_xref "SPD:12/12D12" ; systematic_id "SPAC5H10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c14orf159 ortholog; date=20091004" ; colour "10" ; gene "SPAC5H10.01" ; product "DUF1445 family protein" ;
chromosome1 GeneDB CDS 146974 147879 . + . mRNA SPAC5H10.01 ; colour "10" ;
chromosome1 GeneDB CDS_parts 148213 148935 . - . mRNA SPAC5H10.02c ; db_xref "SPD:08/08E11" ; systematic_id "SPAC5H10.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR533C and YPL280W and YOR391C and YMR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0034599; cellular response to oxidative stress" ; gene "SPAC5H10.02c" ; product "ThiJ domain protein" ;
chromosome1 GeneDB CDS 148213 148935 . - . mRNA SPAC5H10.02c ; colour "10" ;
chromosome1 GeneDB rRNA 149658 149776 . + . rRNA SPRRNA.10 ; systematic_id "SPRRNA.10" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.10" ; product "5S rRNA" ;
chromosome1 GeneDB CDS_parts 151913 152572 . + . mRNA SPAC5H10.03 ; db_xref "SPD:41/41D12" ; systematic_id "SPAC5H10.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPAC513.02; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; colour "10" ; gene "SPAC5H10.03" ; product "phosphoglycerate mutase family" ;
chromosome1 GeneDB CDS 151913 152572 . + . mRNA SPAC5H10.03 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 152573 152855 . + . mRNA SPAC5H10.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC5H10.03" ; systematic_id "SPAC5H10.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 153387 154535 . + . mRNA SPAC5H10.04 ; db_xref "SPD:18/18B05" ; systematic_id "SPAC5H10.04" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR179W and YPL171C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPAC5H10.04" ; product "NADPH dehydrogenase (predicted)" ; EC_number "1.6.99.1" ;
chromosome1 GeneDB CDS 153387 154535 . + . mRNA SPAC5H10.04 ; colour "10" ;
chromosome1 GeneDB CDS_parts 154807 155397 . - . mRNA SPAC5H10.05c ; db_xref "SPD:06/06E01" ; systematic_id "SPAC5H10.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=warning, possible horizontal transfer; date=20100827" ; GO "GO:0050660; FAD binding" ; colour "10" ; gene "SPAC5H10.05c" ; product "FAD binding oxidoreductase (predicted)" ;
chromosome1 GeneDB CDS 154807 155397 . - . mRNA SPAC5H10.05c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 155396 155441 . - . mRNA SPAC5H10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5H10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 156430 156547 . - . mRNA SPAC5H10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC5H10.06c" ; systematic_id "SPAC5H10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 156548 157816 . - . mRNA SPAC5H10.06c ; systematic_id "SPAC5H10.06c" ; colour "2" ; gene "adh4 ||| SPAC5H10.06c" ; Alias "adh4" ; db_xref "SPD:44/44B03" ; GO "GO:0005739; mitochondrion
GO:0004023; alcohol dehydrogenase activity, metal ion-independent
GO:0004024; alcohol dehydrogenase activity, zinc- dependent
GO:0034224; cellular response to zinc ion starvation
GO:0019655; glucose catabolism to ethanol
GO:0071276; cellular response to cadmium ion
GO:0055069; zinc ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL256W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "adh4" ; product "alcohol dehydrogenase Adh4" ; EC_number "1.1.1.1" ;
chromosome1 GeneDB CDS 156548 157816 . - . mRNA SPAC5H10.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 157815 157970 . - . mRNA SPAC5H10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5H10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 159203 159472 . + . mRNA SPAC5H10.07 ; db_xref "SPD:01/01C01" ; systematic_id "SPAC5H10.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC5H10.07" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 159203 159472 . + . mRNA SPAC5H10.07 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 159880 160093 . - . mRNA SPAC5H10.08c ; ID "SPAC5H10.08c" ; db_xref "SPD:11/11B08" ; systematic_id "SPAC5H10.08c" ; gene "SPAC5H10.08c ||| pan6" ; note "mRNA from AU008147" ;
chromosome1 GeneDB CDS_parts 160094 160945 . - . mRNA SPAC5H10.08c ; systematic_id "SPAC5H10.08c" ; colour "2" ; gene "SPAC5H10.08c ||| pan6" ; note "possibly coexpressed with SPAC5H10.09c which is also involved in pantothenate biosynthesis" ; Alias "pan6" ; db_xref "SPD:11/11B08" ; GO "GO:0015940; pantothenate biosynthesis
GO:0004592; pantoate-beta-alanine ligase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL145C; date=19700101 ||| term=warning, co-expressed with adjacent gene; qualifier=predicted; date=20100821 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "pan6" ; product "pantoate-beta-alanine ligase" ; EC_number "6.3.2.1" ;
chromosome1 GeneDB CDS 160094 160945 . - . mRNA SPAC5H10.08c ; colour "2" ;
chromosome1 GeneDB CDS_parts 160977 161780 . - . mRNA SPAC5H10.09c ; db_xref "SPD:10/10B09" ; systematic_id "SPAC5H10.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR176W; date=19700101 ||| term=warning, co-expressed with adjacent gene; qualifier=predicted; date=20100821 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005739; mitochondrion
GO:0003864; 3-methyl-2-oxobutanoate hydroxymethyltransferase activity
GO:0015940; pantothenate biosynthesis" ; gene "SPAC5H10.09c" ; product "3-methyl-2-oxobutanoatehydroxymethyltransferase(predicted)" ; EC_number "2.1.2.11" ;
chromosome1 GeneDB CDS 160977 161780 . - . mRNA SPAC5H10.09c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 161779 161822 . - . mRNA SPAC5H10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5H10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 162757 162959 . + . mRNA SPAC5H10.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5H10.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 162960 164138 . + . mRNA SPAC5H10.10 ; db_xref "SPD:18/18F09" ; systematic_id "SPAC5H10.10" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR179W and YPL171C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPAC5H10.10" ; product "NADPH dehydrogenase (predicted)" ; EC_number "1.6.99.1" ;
chromosome1 GeneDB CDS 162960 164138 . + . mRNA SPAC5H10.10 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 164139 164187 . + . mRNA SPAC5H10.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC5H10.10" ; systematic_id "SPAC5H10.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 164728 165717 . + . mRNA SPAC5H10.11 ; systematic_id "SPAC5H10.11" ; colour "7" ; gene "gmh1 ||| SPAC5H10.11" ; Alias "gmh1" ; db_xref "SPD:43/43F10" ; GO "GO:0042125; protein amino acid galactosylation
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "gmh1" ; product "alpha-1,2-galactosyltransferase Gmh1 (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB CDS 164728 165717 . + . mRNA SPAC5H10.11 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 165947 166419 . - . mRNA SPAC5H10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC5H10.12c" ; systematic_id "SPAC5H10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 166420 167535 . - . mRNA SPAC5H10.12c ; db_xref "SPD:43/43G11" ; systematic_id "SPAC5H10.12c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR320C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008375; acetylglucosaminyltransferase activity
GO:0006487; protein amino acid N-linked glycosylation
GO:0005794; Golgi apparatus" ; gene "SPAC5H10.12c" ; product "acetylglucosaminyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB CDS 166420 167535 . - . mRNA SPAC5H10.12c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 167534 167706 . - . mRNA SPAC5H10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5H10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 168810 169850 . - . mRNA SPAC5H10.13c ; systematic_id "SPAC5H10.13c" ; colour "7" ; gene "gmh2 ||| SPAC5H10.13c" ; Alias "gmh2" ; db_xref "SPD:15/15G07" ; GO "GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0042125; protein amino acid galactosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "gmh2" ; product "alpha-1,2-galactosyltransferase Gmh2 (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB CDS 168810 169850 . - . mRNA SPAC5H10.13c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 169849 170017 . - . mRNA SPAC5H10.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5H10.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snoRNA 170709 170856 . + . snoRNA SPSNORNA.49 ; Alias "snR97" ; db_xref "EMBL:AJ632015 ||| PMID:15716270" ; systematic_id "SPSNORNA.49" ; gene "SPSNORNA.49" ; primary_name "snR97" ; product "small nucleolar RNA snR97" ;
chromosome1 GeneDB 3'-UTR 170732 170971 . - . mRNA SPAC13G6.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G6.01c" ; systematic_id "SPAC13G6.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 170972 174373 . - . mRNA SPAC13G6.01c ; systematic_id "SPAC13G6.01c" ; colour "2" ; gene "rad8 ||| SPAC5H10.14c ||| SPAC13G6.01c" ; Alias "rad8" ; db_xref "SPD:48/48C04" ; synonym "SPAC5H10.14c" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20070129 ||| term=zinc finger protein; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR032W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8290359; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=20080528 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004842; ubiquitin-protein ligase activity
GO:0006281; DNA repair
GO:0006281; DNA repair
GO:0006281; DNA repair
GO:0009650; UV protection
GO:0006289; nucleotide-excision repair
GO:0006301; postreplication repair
GO:0006974; response to DNA damage stimulus" ; primary_name "rad8" ; product "ubiquitin-protein ligase E3 Rad8" ;
chromosome1 GeneDB CDS 170972 174373 . - . mRNA SPAC13G6.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 171162 171286 . + . misc_feature unknown_49 ; note "nominal overlap between cosmid SPAC5H10 and cosmid SPAC13G6" ;
chromosome1 GeneDB 5'-UTR 174372 174635 . - . mRNA SPAC13G6.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G6.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 174967 175012 . - . mRNA SPAC13G6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G6.02c" ; systematic_id "SPAC13G6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 175013 175771 . - . mRNA SPAC13G6.02c ; systematic_id "SPAC13G6.02c" ; colour "2" ; gene "rps101 ||| rps1-1 ||| rps3a-1 ||| SPAC13G6.02c" ; Alias "rps101" ; db_xref "SPD:31/31H08" ; synonym "rps1-1 ||| rps3a-1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR441C and YML063W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; primary_name "rps101" ; product "40S ribosomal protein S3a" ;
chromosome1 GeneDB CDS 175013 175771 . - . mRNA SPAC13G6.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 175770 175792 . - . mRNA SPAC13G6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 175826 175833 . - . promoter unknown_50 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB misc_RNA 175923 176736 . + . misc_RNA SPNCRNA.141 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.141" ; synonym "SPNG40" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 48 amino acids ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 177001 177291 . + . mRNA SPAC13G6.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G6.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 177292 179568 . + . mRNA SPAC13G6.03 ; systematic_id "SPAC13G6.03" ; colour "7" ; gene "gpi7 ||| SPAC13G6.03" ; Alias "gpi7" ; db_xref "SPD:28/28B09" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0006506; GPI anchor biosynthesis
GO:0051377; mannose-ethanolamine phosphotransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL062W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gpi7" ; product "GPI anchor biosynthesis protein Gpi7 (predicted)" ; reserved_name "gpi7" ;
chromosome1 GeneDB CDS 177292 179568 . + . mRNA SPAC13G6.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 179569 180028 . + . mRNA SPAC13G6.03 ; Alias "gpi7" ; ID "SPAC13G6.03" ; db_xref "SPD:28/28B09" ; systematic_id "SPAC13G6.03" ; primary_name "gpi7" ; gene "gpi7 ||| SPAC13G6.03" ; note "mRNA from AU010392" ;
chromosome1 GeneDB CDS_parts 180423 180911 . + . mRNA SPAC13G6.04 ; systematic_id "SPAC13G6.04" ; colour "7" ; gene "tim8 ||| SPAC13G6.04" ; Alias "tim8" ; db_xref "SPD:42/42A06" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0042719; mitochondrial intermembrane space protein transporter complex
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, dystonia- deafness syndrome; date=20060920 ||| term=disease associated, deafness; date=20080101 ||| term=orthologous to S. cerevisiae YJR135W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080503" ; primary_name "tim8" ; product "TIM22 inner membrane protein import complex subunit Tim8 (predicted)" ;
chromosome1 GeneDB CDS 180423 180528 . + . mRNA SPAC13G6.04 ; colour "7" ;
chromosome1 GeneDB CDS 180586 180721 . + . mRNA SPAC13G6.04 ; colour "7" ;
chromosome1 GeneDB CDS 180890 180911 . + . mRNA SPAC13G6.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 180529 180534 . + . misc_feature unknown_51 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB intron 180529 180585 . + . intron SPAC13G6.04 ; Alias "tim8" ; db_xref "SPD:42/42A06" ; systematic_id "SPAC13G6.04" ; primary_name "tim8" ; gene "tim8 ||| SPAC13G6.04" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 180569 180585 . + . misc_feature unknown_52 ; colour "6" ; note "ctaatccaaaaccttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 180903 181076 . - . mRNA SPAC13G6.05c ; ID "SPAC13G6.05c" ; db_xref "SPD:17/17B08" ; systematic_id "SPAC13G6.05c" ; gene "SPAC13G6.05c" ; note "mRNA from spc00076" ;
chromosome1 GeneDB CDS_parts 181077 182170 . - . mRNA SPAC13G6.05c ; systematic_id "SPAC13G6.05c" ; colour "7" ; gene "SPAC13G6.05c" ; Alias "trs33" ; db_xref "SPD:17/17B08" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0030008; TRAPP complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR115C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "trs33" ; product "TRAPP complex subunit Trs33 (predicted)" ;
chromosome1 GeneDB CDS 181077 181436 . - . mRNA SPAC13G6.05c ; colour "7" ;
chromosome1 GeneDB CDS 181485 181574 . - . mRNA SPAC13G6.05c ; colour "7" ;
chromosome1 GeneDB CDS 181632 181749 . - . mRNA SPAC13G6.05c ; colour "7" ;
chromosome1 GeneDB CDS 182001 182170 . - . mRNA SPAC13G6.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 181437 181454 . - . misc_feature unknown_53 ; colour "6" ; note "ctaatcgtttctttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 181479 181484 . - . misc_feature unknown_54 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 181575 181594 . - . misc_feature unknown_55 ; colour "6" ; note "ctaacggtttaaaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 181626 181631 . - . misc_feature unknown_56 ; colour "6" ; note "gtacaa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 181750 181761 . - . misc_feature unknown_57 ; colour "6" ; note "ttgattgaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 181995 182000 . - . misc_feature unknown_58 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 182169 182226 . - . mRNA SPAC13G6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 182500 182975 . - . mRNA SPAC13G6.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G6.06c" ; systematic_id "SPAC13G6.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 182976 186029 . - . mRNA SPAC13G6.06c ; systematic_id "SPAC13G6.06c" ; colour "7" ; gene "SPAC13G6.06c ||| gcv2" ; Alias "gcv2" ; db_xref "KEGG:MAP00260; ||| SPD:29/29H09" ; GO "GO:0005960; glycine cleavage complex
GO:0005739; mitochondrion
GO:0004375; glycine dehydrogenase (decarboxylating) activity
GO:0019464; glycine decarboxylation via glycine cleavage system" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hyperglycinemia; date=20060920 ||| term=orthologous to S. cerevisiae YMR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gcv2" ; product "glycine cleavage complex subunit P (predicted)" ; EC_number "1.4.4.2" ;
chromosome1 GeneDB CDS 182976 186029 . - . mRNA SPAC13G6.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 186028 186242 . - . mRNA SPAC13G6.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G6.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 186790 186843 . - . mRNA SPAC13G6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G6.07c" ; systematic_id "SPAC13G6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 186844 187563 . - . mRNA SPAC13G6.07c ; systematic_id "SPAC13G6.07c" ; colour "2" ; gene "rps601 ||| rps6-1 ||| SPAC13G6.07c" ; Alias "rps601" ; db_xref "SPD:08/08E07" ; synonym "rps6-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL090C and YBR181C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps601" ; product "40S ribosomal protein S6" ;
chromosome1 GeneDB CDS 186844 187563 . - . mRNA SPAC13G6.07c ; colour "2" ;
chromosome1 GeneDB promoter 187628 187635 . - . promoter unknown_59 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB CDS_parts 188377 189984 . + . mRNA SPAC13G6.08 ; db_xref "SPD:25/25G06" ; systematic_id "SPAC13G6.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Cdc20/Fizzy subfamily; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=similar to S. pombe SPCC1620.04C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC13G6.08" ; product "Cdc20/Fizzy subfamily WD repeat protein" ;
chromosome1 GeneDB CDS 188377 189984 . + . mRNA SPAC13G6.08 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 190258 190321 . + . mRNA SPAC13G6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 190322 191291 . + . mRNA SPAC13G6.09 ; db_xref "SPD:13/13G11" ; systematic_id "SPAC13G6.09" ; GO "GO:0030490; maturation of SSU-rRNA" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL022C; date=19700101 ||| term=human PDCD2 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; product "SSU-rRNA maturation protein Tsr4 homolog 2 (predicted)" ;
chromosome1 GeneDB CDS 190322 190584 . + . mRNA SPAC13G6.09 ; colour "7" ;
chromosome1 GeneDB CDS 190730 191291 . + . mRNA SPAC13G6.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 190585 190590 . + . misc_feature unknown_60 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 190710 190729 . + . misc_feature unknown_61 ; colour "6" ; note "ctaactttacatttacttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 191928 192295 . - . mRNA SPAC13G6.10c ; ID "SPAC13G6.10c" ; db_xref "SPD:45/45C06" ; systematic_id "SPAC13G6.10c" ; note "mRNA from AU011742" ;
chromosome1 GeneDB CDS_parts 192296 193888 . - . mRNA SPAC13G6.10c ; systematic_id "SPAC13G6.10c" ; colour "2" ; db_xref "SPD:45/45C06" ; Alias "asl1" ; GO "GO:0010339; external side of cell wall
GO:0004553; hydrolase activity, hydrolyzing O- glycosyl compounds
GO:0046379; extracellular polysaccharide metabolic process
GO:0071966; fungal-type cell wall polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to N. crassa B24p11.210; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=name description, alkali- sensitive linkage; db_xref=PMID:17230583; date=20090615" ; primary_name "asl1" ; product "cell wall protein Asl1, predicted O-glucosyl hydrolase" ;
chromosome1 GeneDB CDS 192296 193888 . - . mRNA SPAC13G6.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 193887 194075 . - . mRNA SPAC13G6.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G6.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 194119 195582 . - . mRNA SPAC13G6.11c ; systematic_id "SPAC13G6.11c" ; colour "7" ; gene "erg12 ||| SPAC13G6.11c" ; Alias "erg12" ; db_xref "SPD:44/44G04" ; GO "GO:0006696; ergosterol biosynthesis
GO:0004496; mevalonate kinase activity
GO:0042803; protein homodimerization activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, mevalonicaciduria; date=20060724 ||| term=orthologous to S. cerevisiae YMR208W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "erg12" ; product "mevalonate kinase Erg12 (predicted)" ; EC_number "2.7.1.36" ; reserved_name "erg12" ;
chromosome1 GeneDB CDS 194119 195258 . - . mRNA SPAC13G6.11c ; colour "7" ;
chromosome1 GeneDB CDS 195508 195582 . - . mRNA SPAC13G6.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 195259 195270 . - . misc_feature unknown_62 ; colour "6" ; note "ctaactttctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 195259 195507 . - . intron SPAC13G6.11c ; Alias "erg12" ; db_xref "SPD:44/44G04" ; systematic_id "SPAC13G6.11c" ; primary_name "erg12" ; gene "erg12 ||| SPAC13G6.11c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 195502 195507 . - . misc_feature unknown_63 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 195583 195626 . - . mRNA SPAC13G6.11c ; Alias "erg12" ; ID "SPAC13G6.11c" ; systematic_id "SPAC13G6.11c" ; primary_name "erg12" ; gene "erg12 ||| SPAC13G6.11c" ; note "mRNA from SPAB541" ;
chromosome1 GeneDB CDS_parts 196090 198715 . - . mRNA SPAC13G6.12c ; systematic_id "SPAC13G6.12c" ; colour "2" ; gene "chs1 ||| SPAC13G6.12c ||| SPAC24B11.01c" ; Alias "chs1" ; db_xref "SPD:38/38F11" ; synonym "SPAC24B11.01c" ; GO "GO:0004100; chitin synthase activity
GO:0034217; spore wall chitin biosynthetic process
GO:0030476; spore wall assembly (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)
GO:0005887; integral to plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15277753; date=19700101 ||| term=orthologous to S. cerevisiae YBR038W and YNL192W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "chs1" ; product "chitin synthase I" ; EC_number "2.4.1.16" ;
chromosome1 GeneDB CDS 196090 196174 . - . mRNA SPAC13G6.12c ; colour "2" ;
chromosome1 GeneDB CDS 196221 198715 . - . mRNA SPAC13G6.12c ; colour "2" ;
chromosome1 GeneDB misc_feature 196175 196187 . - . misc_feature unknown_64 ; colour "6" ; note "ctaactataatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 196215 196220 . - . misc_feature unknown_65 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 198117 204642 . + . misc_feature unknown_66 ; note "nominal overlap with cosmid SPAC13G6 and cosmid SPAC24B11" ;
chromosome1 GeneDB CDS_parts 198884 199231 . + . mRNA SPAC13G6.13 ; db_xref "SPD:02/02B05" ; systematic_id "SPAC13G6.13" ; synonym "SPAC24B11.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; date=20100606" ; colour "8" ; gene "SPAC13G6.13 ||| SPAC24B11.02" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 198884 199231 . + . mRNA SPAC13G6.13 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 200121 200234 . + . mRNA SPAC13G6.14 ; Alias "aps1" ; ID "SPAC13G6.14" ; systematic_id "SPAC13G6.14" ; gene "aps1 ||| SPAC13G6.14 ||| SPAC24B11.03" ; primary_name "aps1" ; note "mRNA from AU008141" ;
chromosome1 GeneDB CDS_parts 200235 200867 . + . mRNA SPAC13G6.14 ; systematic_id "SPAC13G6.14" ; colour "2" ; gene "aps1 ||| SPAC13G6.14 ||| SPAC24B11.03" ; Alias "aps1" ; db_xref "SPD:07/07C02" ; synonym "SPAC24B11.03" ; GO "GO:0008486; diphosphoinositol-polyphosphate diphosphatase activity
GO:0015959; diadenosine polyphosphate catabolic process
GO:0071544; diphosphoinositol catabolic process
GO:0071544; diphosphoinositol catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12387729; date=19700101 ||| term=orthologous to S. cerevisiae YOR163W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "aps1" ; product "diadenosine 5',5'''-p1,p6-hexaphosphate hydrolase Aps1" ; EC_number "3.6.1.52" ;
chromosome1 GeneDB CDS 200235 200867 . + . mRNA SPAC13G6.14 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 200868 201255 . + . mRNA SPAC13G6.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G6.14" ; systematic_id "SPAC13G6.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 201971 202486 . - . mRNA SPAC13G6.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G6.15c" ; systematic_id "SPAC13G6.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 202487 202978 . - . mRNA SPAC13G6.15c ; systematic_id "SPAC13G6.15c" ; colour "7" ; gene "SPAC13G6.15c ||| SPAC24B11.04c" ; db_xref "SPD:04/04F09" ; synonym "SPAC24B11.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL159C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008597; calcium-dependent protein serine/threonine phosphatase regulator activity
GO:0030346; protein phosphatase 2B binding
GO:0019722; calcium-mediated signaling" ; product "calcipressin (predicted)" ;
chromosome1 GeneDB CDS 202487 202978 . - . mRNA SPAC13G6.15c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 202977 203236 . - . mRNA SPAC13G6.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G6.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 204391 205212 . + . mRNA SPAC24B11.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24B11.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 205213 205893 . + . mRNA SPAC24B11.05 ; db_xref "SPD:07/07H03" ; systematic_id "SPAC24B11.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL224C and YER037W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0047405; pyrimidine-5'-nucleotide nucleosidase activity
GO:0006206; pyrimidine base metabolism
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008252; nucleotidase activity" ; gene "SPAC24B11.05" ; product "pyrimidine 5'-nucleotidase (predicted)" ;
chromosome1 GeneDB CDS 205213 205893 . + . mRNA SPAC24B11.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 205894 206081 . + . mRNA SPAC24B11.05 ; ID "SPAC24B11.05" ; db_xref "SPD:07/07H03" ; systematic_id "SPAC24B11.05" ; gene "SPAC24B11.05" ; note "mRNA from AU007385" ;
chromosome1 GeneDB 3'-UTR 206476 206863 . - . mRNA SPAC24B11.06c ; ID "SPAC24B11.06c" ; db_xref "SPD:16/16A05" ; systematic_id "SPAC24B11.06c" ; note "mRNA from SP26739" ;
chromosome1 GeneDB CDS_parts 206864 207913 . - . mRNA SPAC24B11.06c ; systematic_id "SPAC24B11.06c" ; colour "2" ; db_xref "SPD:16/16A05" ; Alias "sty1" ; synonym "spc1 ||| phh1" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004707; MAP kinase activity
; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030003; cation homeostasis
GO:0034644; cellular response to UV
GO:0071243; cellular response to arsenic
GO:0034605; cellular response to heat
GO:0070301; cellular response to hydrogen peroxide
GO:0006995; cellular response to nitrogen starvation
GO:0034599; cellular response to oxidative stress
GO:0009267; cellular response to starvation
GO:0031990; mRNA export from nucleus during heat stress
GO:0045931; positive regulation of progression through mitotic cell cycle
GO:0006468; protein amino acid phosphorylation
GO:0034613; protein localization in nucleus
GO:0051101; regulation of DNA binding
GO:0043949; regulation of cAMP-mediated signaling
GO:0010847; regulation of chromatin assembly
GO:0010848; regulation of chromatin disassembly
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0035065; regulation of histone acetylation
GO:0051445; regulation of meiotic cell cycle
GO:0010520; regulation of reciprocal meiotic recombination
GO:0070321; regulation of translation in response to nitrogen starvation
GO:0043557; regulation of translation in response to osmotic stress
GO:0043557; regulation of translation in response to osmotic stress
GO:0043556; regulation of translation in response to oxidative stress
GO:0043556; regulation of translation in response to oxidative stress
GO:0071473; cellular response to cation stress
GO:0070301; cellular response to hydrogen peroxide
GO:0051595; response to methylglyoxal
GO:0051595; response to methylglyoxal
GO:0006970; response to osmotic stress
GO:0006883; sodium ion homeostasis
GO:0051403; stress-activated MAPK cascade
GO:0070314; G1 to G0 transition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:10233152; cv=localization; date=19700101 ||| term=orthologous to S. cerevisiae YLR113W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7501024; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:12529438; date=20090110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=phenotype, defective in recovery of translation after hyperosmotic shock; cv=phenotype; qualifier=deletion; db_xref=PMID:18065650; date=20090210 ||| term=phenotype, defective in recovery of translation after oxidative stress; cv=phenotype; qualifier=deletion; db_xref=PMID:18065650; date=20090210 ||| term=phenotype, defective in recovery of translation during nitrogen starvation; cv=phenotype; qualifier=deletion; db_xref=PMID:18065650; date=20090210 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, sensitive to H202; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=target is Srk1; qualifier=phosphorylates; db_xref=PMID:12080074; date=20100429 ||| term=target is Cmk2; qualifier=phosphorylates; db_xref=PMID:12589433; date=20100429 ||| term=target is Atf1; qualifier=phosphorylates; db_xref=PMID:9251044; date=20100429" ; primary_name "sty1" ; product "MAP kinase Sty1" ;
chromosome1 GeneDB CDS 206864 207913 . - . mRNA SPAC24B11.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 207395 207397 . - . misc_feature unknown_67 ; note "phosphorylation site ||| phosphorlation:Wis1p:activates:PMID 9718372 ||| dephosphorlation:Pyp1p:inactivates:PMID 1464319 ||| dephosphorlation:Pyp2p:inactivates:PMID 1464319" ;
chromosome1 GeneDB misc_feature 207401 207403 . - . misc_feature unknown_68 ; note "phosphorylation site ||| phosphorlation:Wis1p:activates:PMID 9718372 ||| dephosphorlation:Pyp1p:inactivates:PMID 1464319 ||| dephosphorlation:Pyp2p:inactivates:PMID 1464319" ;
chromosome1 GeneDB 5'-UTR 207914 208044 . - . mRNA SPAC24B11.06c ; ID "SPAC24B11.06c" ; systematic_id "SPAC24B11.06c" ; note "mRNA from SP26739" ;
chromosome1 GeneDB 3'-UTR 208955 209345 . - . mRNA SPAC24B11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24B11.07c" ; systematic_id "SPAC24B11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 209346 211031 . - . mRNA SPAC24B11.07c ; db_xref "SPD:35/35C01" ; systematic_id "SPAC24B11.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR251W and YPL032C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPAC24B11.07c" ; product "oxidoreductase (predicted)" ;
chromosome1 GeneDB CDS 209346 211031 . - . mRNA SPAC24B11.07c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 211032 211275 . - . mRNA SPAC24B11.07c ; ID "SPAC24B11.07c" ; systematic_id "SPAC24B11.07c" ; gene "SPAC24B11.07c" ; note "mRNA from AU009926" ;
chromosome1 GeneDB 3'-UTR 211714 212033 . - . mRNA SPAC24B11.08c ; ID "SPAC24B11.08c" ; db_xref "SPD:18/18E10" ; systematic_id "SPAC24B11.08c" ; gene "SPAC24B11.08c" ; note "mRNA from AU006556" ;
chromosome1 GeneDB CDS_parts 212034 213206 . - . mRNA SPAC24B11.08c ; db_xref "SPD:18/18E10" ; systematic_id "SPAC24B11.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL042W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005789; endoplasmic reticulum membrane
GO:0000139; Golgi membrane
GO:0006886; intracellular protein transport
GO:0030134; ER to Golgi transport vesicle" ; gene "SPAC24B11.08c" ; product "COPII-coated vesicle component Erv46 (predicted)" ;
chromosome1 GeneDB CDS 212034 213206 . - . mRNA SPAC24B11.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 213205 213522 . - . mRNA SPAC24B11.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24B11.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 213841 214818 . + . misc_RNA SPNCRNA.142 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.142" ; synonym "SPNG45" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 216483 216839 . + . mRNA SPAC24B11.09 ; db_xref "SPD:02/02D06" ; systematic_id "SPAC24B11.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR243W and YHR162W; date=19700101 ||| term=human BRP44 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0005739; mitochondrion" ; gene "SPAC24B11.09" ; product "mitochondrial protein, predicted, human BRP44 ortholog" ;
chromosome1 GeneDB CDS 216483 216839 . + . mRNA SPAC24B11.09 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 216840 216962 . + . mRNA SPAC24B11.09 ; ID "SPAC24B11.09" ; db_xref "SPD:02/02D06" ; systematic_id "SPAC24B11.09" ; gene "SPAC24B11.09" ; note "mRNA from AU013763" ;
chromosome1 GeneDB 3'-UTR 218417 218656 . - . mRNA SPAC24B11.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24B11.10c" ; systematic_id "SPAC24B11.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 218657 221455 . - . mRNA SPAC24B11.10c ; systematic_id "SPAC24B11.10c" ; colour "10" ; gene "chr3 ||| SPAC24B11.10c ||| cfh1" ; db_xref "SPD:29/29D12" ; Alias "chr3" ; synonym "cfh1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SEL1 repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL061C and YDL203C and YER096W; date=19700101 ||| term=name description, Chs Four Homologue; attribution=pers. comm. Henar Montero; date=20091017 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=warning, gene structure may be incorrect; date=20110117 ||| term=warning, possible splicing; date=20110117" ; primary_name "chr3" ; product "chitin synthase regulatory factor-like Chr3 (predicted)" ; reserved_name "chr3" ;
chromosome1 GeneDB CDS 218657 221455 . - . mRNA SPAC24B11.10c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 221454 221498 . - . mRNA SPAC24B11.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24B11.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 221880 222028 . - . mRNA SPAC24B11.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24B11.11c" ; systematic_id "SPAC24B11.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 222029 223852 . - . mRNA SPAC24B11.11c ; systematic_id "SPAC24B11.11c" ; colour "2" ; gene "sid2 ||| SPAC24B11.11c" ; db_xref "SPD:45/45H10" ; Alias "sid2" ; GO "GO:0034973; Sid2-Mob1 complex
GO:0031097; medial ring
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0071775; regulation of cell cycle cytokinesis
GO:0006468; protein amino acid phosphorylation
GO:0031028; septation initiation signaling
GO:0061167; maintenance of ER location involved in ER polarization at cell division site" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9649519; date=19700101 ||| term=phenotype, septum initiation defective; cv=phenotype; date=20090729 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9649519; date=20100727 ||| term=phenotype, multinucleate; db_xref=PMID:9649519; date=20100727 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YGR092W and YPR111W; date=19700101 ||| term=Ndr kinase/myotonic dystrophy kinase/cot1/warts family; db_xref=PMID:18411246|PMID:18397994; date=20080416 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15060153; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, Septum Initiation Defective; cv=name_description; date=20090729" ; primary_name "sid2" ; product "NDR kinase Sid2" ;
chromosome1 GeneDB CDS 222029 223852 . - . mRNA SPAC24B11.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 223851 223917 . - . mRNA SPAC24B11.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24B11.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 224246 224395 . - . mRNA SPAC24B11.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24B11.12c" ; systematic_id "SPAC24B11.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 224396 228683 . - . mRNA SPAC24B11.12c ; db_xref "SPD:30/30G07" ; systematic_id "SPAC24B11.12c" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0004012; phospholipid-translocating ATPase activity
GO:0006897; endocytosis
GO:0006886; intracellular protein transport
GO:0045332; phospholipid translocation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR093W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; gene "SPAC24B11.12c" ; product "P-type ATPase (predicted)" ; EC_number "3.6.3.1" ;
chromosome1 GeneDB CDS 224396 228232 . - . mRNA SPAC24B11.12c ; colour "7" ;
chromosome1 GeneDB CDS 228312 228683 . - . mRNA SPAC24B11.12c ; colour "7" ;
chromosome1 GeneDB misc_feature 228233 228250 . - . misc_feature unknown_69 ; colour "2" ; note "splice branch and acceptor sequence, tactaacgttttatg tag" ;
chromosome1 GeneDB misc_feature 228306 228311 . - . misc_feature unknown_70 ; colour "2" ; note "splice donor sequence, gtatgc" ;
chromosome1 GeneDB 5'-UTR 228682 229197 . - . mRNA SPAC24B11.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24B11.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 230275 232030 . + . misc_feature unknown_71 ; note "nominal overlap between cosmid SPAC806 and SAPC24B11" ;
chromosome1 GeneDB CDS_parts 230545 231136 . + . mRNA SPAC24B11.14 ; db_xref "SPD:06/06E02" ; systematic_id "SPAC24B11.14" ; synonym "SPAC806.10" ; colour "6" ; gene "SPAC24B11.14 ||| SPAC806.10" ; product "dubious" ; note "neither intron was detected in transcriptome data, unlikely to be coding" ;
chromosome1 GeneDB CDS 230545 230681 . + . mRNA SPAC24B11.14 ; colour "6" ;
chromosome1 GeneDB CDS 230743 230799 . + . mRNA SPAC24B11.14 ; colour "6" ;
chromosome1 GeneDB CDS 230830 231136 . + . mRNA SPAC24B11.14 ; colour "6" ;
chromosome1 GeneDB 5'-UTR 231311 231654 . + . mRNA SPAC24B11.13 ; Alias "SPAC806.01" ; ID "SPAC24B11.13" ; systematic_id "SPAC24B11.13" ; primary_name "SPAC806.01" ; gene "SPAC806.01 ||| SPAC24B11.13 ||| hem3" ; note "mRNA from SPD238" ;
chromosome1 GeneDB CDS_parts 231655 232665 . + . mRNA SPAC24B11.13 ; systematic_id "SPAC24B11.13" ; colour "7" ; gene "SPAC806.01 ||| SPAC24B11.13 ||| hem3" ; Alias "hem3" ; db_xref "SPD:15/15A02" ; synonym "SPAC806.01" ; GO "GO:0006783; heme biosynthesis
GO:0004418; hydroxymethylbilane synthase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060725 ||| term=orthologous to S. cerevisiae YDL205C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "hem3" ; product "hydroxymethylbilane synthase (predicted)" ; EC_number "2.5.1.61" ; reserved_name "hem3" ;
chromosome1 GeneDB CDS 231655 232665 . + . mRNA SPAC24B11.13 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 232666 232992 . + . mRNA SPAC24B11.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24B11.13" ; systematic_id "SPAC24B11.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 233211 233230 . - . mRNA SPAC806.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC806.02c" ; systematic_id "SPAC806.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 233231 235106 . - . mRNA SPAC806.02c ; systematic_id "SPAC806.02c" ; colour "7" ; gene "SPAC806.02c" ; note "gene structure confirmed (pers. comm. Ryo Hanai)" ; db_xref "SPD:46/46A10" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0016226; iron-sulfur cluster assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; date=20060911 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20060825 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR267C (C-term); date=19700101 ||| term=orthologous to S. cerevisiae YIL003W (N-term); date=19700101" ; product "Par A family ATPase/WD repeat iron cluster assembly fusion protein (predicted)" ;
chromosome1 GeneDB CDS 233231 235053 . - . mRNA SPAC806.02c ; colour "7" ;
chromosome1 GeneDB CDS 235103 235106 . - . mRNA SPAC806.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 235054 235068 . - . misc_feature unknown_72 ; colour "6" ; note "ttaactttataatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 235054 235102 . - . intron SPAC806.02c ; db_xref "SPD:46/46A10" ; systematic_id "SPAC806.02c" ; gene "SPAC806.02c" ; note "confirmed (pers.comm. Ryo Hanai)" ;
chromosome1 GeneDB misc_feature 235097 235102 . - . misc_feature unknown_73 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 235105 235137 . - . mRNA SPAC806.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC806.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 235631 235652 . - . mRNA SPAC806.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC806.03c" ; systematic_id "SPAC806.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 235653 236015 . - . mRNA SPAC806.03c ; systematic_id "SPAC806.03c" ; colour "7" ; gene "rps2601 ||| rps26-1 ||| rps26 ||| SPAC806.03c" ; Alias "rps2601" ; db_xref "SPD:02/02E01" ; synonym "rps26-1 ||| rps26" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL189C and YER131W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps2601" ; product "40S ribosomal protein S26 (predicted)" ;
chromosome1 GeneDB CDS 235653 236015 . - . mRNA SPAC806.03c ; colour "7" ;
chromosome1 GeneDB misc_RNA 236819 236928 . + . misc_RNA SPNCRNA.143 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.143" ; synonym "SPNG46" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 0 amino acids ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_RNA 237074 237848 . - . misc_RNA SPNCRNA.03 ; systematic_id "SPNCRNA.03" ; gene "prl03 ||| prl3 ||| SPNCRNA.03" ; note "this feature was created by merging AU007881 and AB084815 which substantially overlap, possible celllular RNA as no obvious open reading frame or spliced gene in this region ||| microarray expression profile on this strand (pers comm. Jurg Bahler)" ; db_xref "PMID:12597277 ||| EMBL:AB084815" ; Alias "prl3" ; synonym "prl03" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl3" ; product "non-coding RNA, poly(A)-bearing RNA (predicted)" ;
chromosome1 GeneDB CDS_parts 237212 237430 . - . mRNA SPAC806.11 ; systematic_id "SPAC806.11" ; controlled_curation "term=warning, longest ORF in feature; cv=warning; date=20060721" ; colour "6" ; gene "SPAC806.11" ; product "dubious" ;
chromosome1 GeneDB CDS 237212 237430 . - . mRNA SPAC806.11 ; colour "6" ;
chromosome1 GeneDB misc_feature 238428 238499 . + . misc_feature unknown_74 ; note "main strand T rich region; 57/72" ;
chromosome1 GeneDB misc_feature 238500 238566 . + . misc_feature unknown_75 ; note "main strand A poor region; 4/67" ;
chromosome1 GeneDB misc_RNA 238509 238898 . + . misc_RNA SPNCRNA.144 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.144" ; synonym "SPNG48" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| longest ORF with methionine is 35 amino acids" ;
chromosome1 GeneDB misc_feature 239200 239279 . + . misc_feature unknown_76 ; note "main strand T-rich region; 57/80" ;
chromosome1 GeneDB misc_RNA 239730 240571 . + . misc_RNA SPNCRNA.145 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.145" ; synonym "SPNG51" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 61 amino acids ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 241187 241425 . - . mRNA SPAC806.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC806.04c" ; systematic_id "SPAC806.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 241426 242941 . - . mRNA SPAC806.04c ; db_xref "SPD:24/24E12" ; systematic_id "SPAC806.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c6orf211 ortholog; date=20100718" ; colour "10" ; gene "SPAC806.04c" ; product "DUF89 family protein" ;
chromosome1 GeneDB CDS 241426 241537 . - . mRNA SPAC806.04c ; colour "10" ;
chromosome1 GeneDB CDS 241589 241693 . - . mRNA SPAC806.04c ; colour "10" ;
chromosome1 GeneDB CDS 241735 242815 . - . mRNA SPAC806.04c ; colour "10" ;
chromosome1 GeneDB CDS 242917 242941 . - . mRNA SPAC806.04c ; colour "10" ;
chromosome1 GeneDB misc_feature 241538 241551 . - . misc_feature unknown_77 ; colour "6" ; note "ctaacaggaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 241583 241588 . - . misc_feature unknown_78 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 241694 241704 . - . misc_feature unknown_79 ; colour "6" ; note "ctaaactacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 241729 241734 . - . misc_feature unknown_80 ; colour "6" ; note "gtgctt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 242816 242835 . - . misc_feature unknown_81 ; colour "6" ; note "ttaatgctttgttaacctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 242911 242916 . - . misc_feature unknown_82 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 242940 243001 . - . mRNA SPAC806.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC806.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 244321 245303 . - . mRNA SPAC806.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC806.06c" ; systematic_id "SPAC806.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 244485 244730 . + . mRNA SPAC806.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC806.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 244731 245108 . + . mRNA SPAC806.05 ; db_xref "SPD:42/42A09" ; systematic_id "SPAC806.05" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=ACN9 family; date=20100820" ; colour "10" ; gene "SPAC806.05" ; product "mitochondrial ANC9 family protein" ;
chromosome1 GeneDB CDS 244731 245108 . + . mRNA SPAC806.05 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 245109 245698 . + . mRNA SPAC806.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC806.05" ; systematic_id "SPAC806.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 245304 246401 . - . mRNA SPAC806.06c ; db_xref "SPD:17/17B10" ; systematic_id "SPAC806.06c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000309; nicotinamide-nucleotide adenylyltransferase activity
GO:0009435; NAD biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR328W and YGR010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC806.06c" ; product "nicotinamide mononucleotide (NMN) adenylyltransferase (predicted)" ; EC_number "2.7.7.1" ;
chromosome1 GeneDB CDS 245304 246401 . - . mRNA SPAC806.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 246400 247016 . - . mRNA SPAC806.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC806.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 247897 247927 . + . mRNA SPAC806.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC806.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 247928 248383 . + . mRNA SPAC806.07 ; systematic_id "SPAC806.07" ; colour "2" ; gene "ndk1 ||| SPAC806.07" ; Alias "ndk1" ; db_xref "SPD:04/04A08" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0004550; nucleoside diphosphate kinase activity
GO:0005829; cytosol
GO:0006183; GTP biosynthesis
GO:0006228; UTP biosynthesis
GO:0006241; CTP biosynthesis
GO:0005524; ATP binding
GO:0000747; conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060920 ||| term=orthologous to S. cerevisiae YKL067W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "ndk1" ; product "nucleoside diphosphate kinase Ndk1" ; EC_number "2.7.4.6" ;
chromosome1 GeneDB CDS 247928 248383 . + . mRNA SPAC806.07 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 248384 248560 . + . mRNA SPAC806.07 ; Alias "ndk1" ; ID "SPAC806.07" ; db_xref "SPD:04/04A08" ; systematic_id "SPAC806.07" ; primary_name "ndk1" ; gene "ndk1 ||| SPAC806.07" ; note "mRNA from AU011829" ;
chromosome1 GeneDB CDS_parts 248680 250536 . - . mRNA SPAC806.08c ; systematic_id "SPAC806.08c" ; colour "2" ; gene "SPAC806.08c ||| mod21" ; Alias "mod21" ; db_xref "SPD:36/36H04" ; GO "GO:0005816; spindle pole body
GO:0000923; equatorial microtubule organizing center
GO:0000930; gamma-tubulin complex
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human GPC5 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mod21" ; product "gamma tubulin complex subunit Mod21" ; reserved_name "mod21" ;
chromosome1 GeneDB CDS 248680 250536 . - . mRNA SPAC806.08c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 250535 250867 . - . mRNA SPAC806.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC806.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 250863 253144 . + . misc_feature unknown_83 ; note "nominal overlap between cosmid SPAC1639 and cosmid SPAC806" ;
chromosome1 GeneDB CDS_parts 251726 253630 . - . mRNA SPAC1639.01c ; systematic_id "SPAC1639.01c" ; colour "7" ; gene "SPAC1639.01c ||| SPAC806.09c" ; db_xref "SPD:19/19F03" ; synonym "SPAC806.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL196C and YCR034W and YLR372W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; GO "GO:0019368; fatty acid elongation, unsaturated fatty acid
GO:0009922; fatty acid elongase activity
GO:0005789; endoplasmic reticulum membrane
GO:0030148; sphingolipid biosynthesis" ; product "GNS1/SUR4 family protein (predicted)" ;
chromosome1 GeneDB CDS 251726 251745 . - . mRNA SPAC1639.01c ; colour "7" ;
chromosome1 GeneDB CDS 251863 252337 . - . mRNA SPAC1639.01c ; colour "7" ;
chromosome1 GeneDB CDS 252392 252752 . - . mRNA SPAC1639.01c ; colour "7" ;
chromosome1 GeneDB CDS 253590 253630 . - . mRNA SPAC1639.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 252338 252353 . - . misc_feature unknown_84 ; colour "6" ; note "ctaacatacgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 252386 252391 . - . misc_feature unknown_85 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 252753 252766 . - . misc_feature unknown_86 ; colour "6" ; note "ctaacaatttttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 252753 253589 . - . intron SPAC1639.01c ; db_xref "PMID:18488015 ||| SPD:19/19F03" ; systematic_id "SPAC1639.01c" ; gene "SPAC1639.01c ||| SPAC806.09c" ;
chromosome1 GeneDB misc_feature 252939 252944 . - . misc_feature unknown_87 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 253631 254934 . - . mRNA SPAC1639.01c ; ID "SPAC1639.01c" ; db_xref "PMID:18488015" ; systematic_id "SPAC1639.01c" ; gene "SPAC1639.01c ||| SPAC806.09c" ; note "from Solexa transcript SPNG55-58" ;
chromosome1 GeneDB misc_feature 255119 256463 . + . misc_feature unknown_88 ; note "nominal overlap with cosmid SPAC1639, EM:AL117213 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 255119 256463 . - . misc_feature unknown_89 ; note "nominal overlap with cosmid SPAC1F5, EM:Z68136 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 255881 256029 . - . mRNA SPAC1639.02c ; Alias "trk2" ; ID "SPAC1639.02c" ; db_xref "SPD:30/30D11" ; systematic_id "SPAC1639.02c" ; primary_name "trk2" ; gene "trk2 ||| SPAC1639.02c ||| SPAC1F5.12" ; note "mRNA from AF266750" ;
chromosome1 GeneDB CDS_parts 256030 259406 . - . mRNA SPAC1639.02c ; systematic_id "SPAC1639.02c" ; colour "2" ; gene "trk2 ||| SPAC1639.02c ||| SPAC1F5.12" ; Alias "trk2" ; db_xref "SPD:30/30D11" ; synonym "SPAC1F5.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL129C and YKR050W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0015079; potassium ion transporter activity
GO:0006813; potassium ion transport
GO:0030007; potassium ion homeostasis
GO:0042391; regulation of membrane potential
GO:0042493; response to drug
GO:0071473; cellular response to cation stress" ; primary_name "trk2" ; product "potassium ion transporter Trk2" ;
chromosome1 GeneDB CDS 256030 256134 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB CDS 256345 256370 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB CDS 256427 256445 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB CDS 256542 256612 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB CDS 256684 256750 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB CDS 256797 257009 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB CDS 257055 257070 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB CDS 257116 257135 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB CDS 257179 257181 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB CDS 257229 258184 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB CDS 258220 259120 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB CDS 259161 259406 . - . mRNA SPAC1639.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 256135 256155 . - . misc_feature unknown_90 ; colour "6" ; note "ctaacggtttatttactttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 256135 256344 . - . intron SPAC1639.02c ; Alias "trk2" ; db_xref "SPD:30/30D11" ; systematic_id "SPAC1639.02c" ; primary_name "trk2" ; gene "trk2 ||| SPAC1639.02c ||| SPAC1F5.12" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 256339 256344 . - . misc_feature unknown_91 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 256371 256391 . - . misc_feature unknown_92 ; colour "6" ; note "ttaacgattttaaaaaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 256421 256426 . - . misc_feature unknown_93 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 256446 256460 . - . misc_feature unknown_94 ; colour "6" ; note "ctaataatggtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 256536 256541 . - . misc_feature unknown_95 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 256613 256626 . - . misc_feature unknown_96 ; colour "6" ; note "ttaactcataaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 256678 256683 . - . misc_feature unknown_97 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 256751 256762 . - . misc_feature unknown_98 ; colour "6" ; note "ttaacggaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 256791 256796 . - . misc_feature unknown_99 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 257010 257025 . - . misc_feature unknown_100 ; colour "6" ; note "ctaaatagctttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 257049 257054 . - . misc_feature unknown_101 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 257071 257085 . - . misc_feature unknown_102 ; colour "6" ; note "ctaacaatggactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 257110 257115 . - . misc_feature unknown_103 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 257136 257146 . - . misc_feature unknown_104 ; colour "6" ; note "ctgatcattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 257173 257178 . - . misc_feature unknown_105 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 257182 257197 . - . misc_feature unknown_106 ; colour "6" ; note "ctaacgtttaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 257223 257228 . - . misc_feature unknown_107 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 258185 258195 . - . misc_feature unknown_108 ; colour "6" ; note "ttgacctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 258214 258219 . - . misc_feature unknown_109 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 259121 259135 . - . misc_feature unknown_110 ; colour "6" ; note "ttaactattttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 259155 259160 . - . misc_feature unknown_111 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 259405 259448 . - . mRNA SPAC1639.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1639.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 259611 259718 . + . mRNA SPAC1F5.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F5.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 259719 270747 . + . mRNA SPAC1F5.11c ; systematic_id "SPAC1F5.11c" ; colour "2" ; gene "SPAC1F5.11c ||| tra2" ; note "possibly lacks protein kinase activity ||| not detected in SAGA (pers. comm. Dom Helmlinger)" ; Alias "tra2" ; db_xref "SPD:34/34D08" ; GO "GO:0004428; inositol or phosphatidylinositol kinase activity
GO:0005515; protein binding
GO:0048017; inositol lipid-mediated signaling
GO:0046854; phosphoinositide phosphorylation
GO:0035267; NuA4 histone acetyltransferase complex
GO:0016573; histone acetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR099W; date=19700101 ||| term=TRRAP family protein; db_xref=PMID:18076567; date=20080104 ||| term=phosphoinositide 3-kinase family protein; date=20080104 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TRRAP ortholog; date=20110113" ; primary_name "tra2" ; product "phosphatidylinositol kinase-related protein Tra2" ;
chromosome1 GeneDB CDS 259719 259782 . + . mRNA SPAC1F5.11c ; colour "2" ;
chromosome1 GeneDB CDS 259844 270747 . + . mRNA SPAC1F5.11c ; colour "2" ;
chromosome1 GeneDB misc_feature 259783 259788 . + . misc_feature unknown_112 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 259829 259843 . + . misc_feature unknown_113 ; colour "6" ; note "ctaactttttttaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 270748 270885 . + . mRNA SPAC1F5.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F5.11c" ; systematic_id "SPAC1F5.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 270941 271019 . - . mRNA SPAC1F5.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F5.10" ; systematic_id "SPAC1F5.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 271020 272323 . - . mRNA SPAC1F5.10 ; db_xref "SPD:22/22F09" ; systematic_id "SPAC1F5.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing" ; gene "SPAC1F5.10" ; product "ATP-dependent RNA helicase, eIF4A related (predicted)" ;
chromosome1 GeneDB CDS 271020 272116 . - . mRNA SPAC1F5.10 ; colour "7" ;
chromosome1 GeneDB CDS 272170 272190 . - . mRNA SPAC1F5.10 ; colour "7" ;
chromosome1 GeneDB CDS 272257 272323 . - . mRNA SPAC1F5.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 272117 272130 . - . misc_feature unknown_114 ; colour "6" ; note "ctaacaacatgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 272164 272169 . - . misc_feature unknown_115 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 272191 272207 . - . misc_feature unknown_116 ; colour "6" ; note "ctaacattgttttgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 272251 272256 . - . misc_feature unknown_117 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 273152 274921 . + . mRNA SPAC1F5.09c ; systematic_id "SPAC1F5.09c" ; colour "2" ; gene "shk2 ||| pak2 ||| SPAC1F5.09c" ; Alias "shk2" ; db_xref "SPD:36/36B11" ; synonym "pak2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9660818; date=19700101 ||| term=PAK-related kinase family; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=pathway, Mkh1-Pek1-Spm1 MAP kinase; cv=pathway; qualifier=activates; date=19700101 ||| term=orthologous to S. cerevisiae YHL007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0071507; MAPKKK cascade during involved in conjugation with cellular fusion
GO:0006468; protein amino acid phosphorylation
GO:0032488; Cdc42 protein signal transduction" ; primary_name "shk2" ; product "PAK-related kinase Shk2" ;
chromosome1 GeneDB CDS 273152 274921 . + . mRNA SPAC1F5.09c ; colour "2" ;
chromosome1 GeneDB CDS_parts 275089 276549 . + . mRNA SPAC1F5.08c ; systematic_id "SPAC1F5.08c" ; colour "2" ; gene "yam8 ||| ehs1 ||| SPAC1F5.08c" ; Alias "yam8" ; db_xref "SPD:44/44G03" ; synonym "ehs1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL291C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; GO "GO:0005783; endoplasmic reticulum
GO:0009897; external side of plasma membrane
GO:0005886; plasma membrane
GO:0006874; cellular calcium ion homeostasis
GO:0070588; transmembrane calcium ion transport
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0070509; calcium ion import" ; primary_name "yam8" ; product "calcium channel regulatory subunit Yam8" ;
chromosome1 GeneDB CDS 275089 276549 . + . mRNA SPAC1F5.08c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 276550 276661 . + . mRNA SPAC1F5.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F5.08c" ; systematic_id "SPAC1F5.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 276881 276892 . + . mRNA SPAC1F5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 276893 278365 . + . mRNA SPAC1F5.07c ; systematic_id "SPAC1F5.07c" ; colour "7" ; gene "hem14 ||| SPAC1F5.07c" ; Alias "hem14" ; db_xref "SPD:44/44G07" ; GO "GO:0004729; protoporphyrinogen oxidase activity
GO:0006783; heme biosynthesis
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060725 ||| term=orthologous to S. cerevisiae YER014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; primary_name "hem14" ; product "protoporphyrinogen oxidase (predicted)" ; EC_number "1.3.3.4" ; reserved_name "hem14" ;
chromosome1 GeneDB CDS 276893 278365 . + . mRNA SPAC1F5.07c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 278366 278530 . + . mRNA SPAC1F5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F5.07c" ; systematic_id "SPAC1F5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 278587 278598 . - . mRNA SPAC1F5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F5.06" ; systematic_id "SPAC1F5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 278599 281145 . - . mRNA SPAC1F5.06 ; systematic_id "SPAC1F5.06" ; colour "7" ; gene "SPAC1F5.06" ; db_xref "SPD:29/29C12" ; Alias "lsh1" ; GO "GO:0034620; cellular response to unfolded protein
GO:0005788; endoplasmic reticulum lumen
GO:0061077; chaperone-mediated protein folding
GO:0000774; adenyl-nucleotide exchange factor activity
GO:0031204; posttranslational protein targeting to membrane, translocation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, chaperone; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YKL073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "lsh1" ; product "ER heat shock protein Lhs1 (predicted)" ; reserved_name "lsh1" ;
chromosome1 GeneDB CDS 278599 281145 . - . mRNA SPAC1F5.06 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 281144 281226 . - . mRNA SPAC1F5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 281832 281948 . + . mRNA SPAC1F5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 281949 282404 . + . mRNA SPAC1F5.05c ; db_xref "SPD:04/04A09" ; systematic_id "SPAC1F5.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan, uncharacterised; date=20100126 ||| term=species distribution, no apparent orthologs; date=20100126" ; colour "8" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 281949 282404 . + . mRNA SPAC1F5.05c ; colour "8" ;
chromosome1 GeneDB 3'-UTR 282405 282745 . + . mRNA SPAC1F5.05c ; ID "SPAC1F5.05c" ; db_xref "SPD:04/04A09" ; systematic_id "SPAC1F5.05c" ; note "mRNA from spc07521" ;
chromosome1 GeneDB 5'-UTR 283370 283475 . + . mRNA SPAC1F5.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F5.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 283476 289001 . + . mRNA SPAC1F5.04c ; systematic_id "SPAC1F5.04c" ; colour "2" ; gene "cdc12 ||| SPAC1F5.04c" ; Alias "cdc12" ; db_xref "SPD:31/31B07" ; GO "GO:0005826; contractile ring
GO:0003779; actin binding
GO:0005515; protein binding
GO:0051017; actin cable formation
GO:0045010; actin nucleation
GO:0051016; barbed-end actin filament capping
GO:0000915; cytokinesis, contractile ring formation
GO:0051126; negative regulation of actin nucleation
GO:0030833; regulation of actin filament polymerization
GO:0061164; transitional endoplasmic reticulum polarization at cell division site
GO:0071519; actin filament bundle assembly involved in actomyosin contractile ring formation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated dumbbell; qualifier=deletion; db_xref=PMID:958201; date=20100802 ||| term=orthologous to S. cerevisiae YNL271C and YIL159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cdc12" ; product "formin Cdc12" ;
chromosome1 GeneDB CDS 283476 289001 . + . mRNA SPAC1F5.04c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 289002 289145 . + . mRNA SPAC1F5.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F5.04c" ; systematic_id "SPAC1F5.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 289806 289951 . + . mRNA SPAC1F5.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F5.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 289952 291301 . + . mRNA SPAC1F5.03c ; db_xref "SPD:20/20H05" ; systematic_id "SPAC1F5.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR009C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAC1F5.03c" ; product "FAD-dependent oxidoreductase (predicted)" ;
chromosome1 GeneDB CDS 289952 289985 . + . mRNA SPAC1F5.03c ; colour "10" ;
chromosome1 GeneDB CDS 290187 291301 . + . mRNA SPAC1F5.03c ; colour "10" ;
chromosome1 GeneDB misc_feature 289986 289991 . + . misc_feature unknown_118 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 290169 290186 . + . misc_feature unknown_119 ; colour "6" ; note "ctaacaaatatttttcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 291302 291732 . + . mRNA SPAC1F5.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F5.03c" ; systematic_id "SPAC1F5.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 291788 292259 . - . mRNA SPAC1F5.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F5.02" ; systematic_id "SPAC1F5.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 292260 293738 . - . mRNA SPAC1F5.02 ; db_xref "SPD:23/23H01" ; systematic_id "SPAC1F5.02" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YCL043C and YDR518W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005788; endoplasmic reticulum lumen
GO:0006457; protein folding
GO:0003756; protein disulfide isomerase activity
GO:0015035; protein disulfide oxidoreductase activity" ; gene "SPAC1F5.02" ; product "protein disulfide isomerase (predicted)" ; EC_number "5.3.4.1" ;
chromosome1 GeneDB CDS 292260 293738 . - . mRNA SPAC1F5.02 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 293739 293771 . - . mRNA SPAC1F5.02 ; ID "SPAC1F5.02" ; systematic_id "SPAC1F5.02" ; gene "SPAC1F5.02" ; note "mRNA from spc05709" ;
chromosome1 GeneDB misc_RNA 294010 294228 . + . misc_RNA SPNCRNA.148 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.148" ; synonym "SPNG60" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; cv=warning; date=20071008 ||| term=warning, signal could be generated by overlap of UTRs; cv=warning; date=20071008" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 9 amino acids ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_feature 294480 295360 . - . misc_feature unknown_120 ; note "nominal overlap between cosmid SPAC18B11 and cosmid SAPC1F5" ;
chromosome1 GeneDB 3'-UTR 294755 294901 . - . mRNA SPAC18B11.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18B11.11" ; systematic_id "SPAC18B11.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 294902 298786 . - . mRNA SPAC18B11.11 ; systematic_id "SPAC18B11.11" ; colour "7" ; gene "SPAC1F5.01 ||| SPAC18B11.11" ; Alias "SPAC1F5.01" ; db_xref "SPD:39/39D04" ; synonym "SPAC1F5.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, tumor suppressor syndrome, tuberous sclereosis; date=19700101 ||| term=similar to S. pombe SPAC630.13c; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005096; GTPase activator activity
GO:0007264; small GTPase mediated signal transduction" ; primary_name "SPAC1F5.01" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB CDS 294902 298786 . - . mRNA SPAC18B11.11 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 298785 299101 . - . mRNA SPAC18B11.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18B11.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 299375 299627 . - . mRNA SPAC18B11.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18B11.10" ; systematic_id "SPAC18B11.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 299464 299610 . + . misc_RNA SPNCRNA.27 ; Alias "prl27" ; db_xref "PMID:12597277 ||| EMBL:AB084839" ; systematic_id "SPNCRNA.27" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl27" ; gene "prl27 ||| SPNCRNA.27" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome1 GeneDB CDS_parts 299628 301711 . - . mRNA SPAC18B11.10 ; systematic_id "SPAC18B11.10" ; colour "2" ; gene "tup11 ||| SPAC18B11.10" ; note "a number of genes are differentially affected by mutations in tup11 and tup12 in cellular response to cation stress (PMID 156320722)" ; Alias "tup11" ; db_xref "SPD:27/27G06" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0042393; histone binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003714; transcription corepressor activity
GO:0003714; transcription corepressor activity
GO:0006342; chromatin silencing
GO:0045014; negative regulation of transcription by glucose
GO:0033554; cellular response to stress
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCR084C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "tup11" ; product "transcriptional corepressor Tup11" ;
chromosome1 GeneDB CDS 299628 301263 . - . mRNA SPAC18B11.10 ; colour "2" ;
chromosome1 GeneDB CDS 301436 301520 . - . mRNA SPAC18B11.10 ; colour "2" ;
chromosome1 GeneDB CDS 301588 301711 . - . mRNA SPAC18B11.10 ; colour "2" ;
chromosome1 GeneDB misc_feature 301264 301276 . - . misc_feature unknown_121 ; colour "6" ; note "ctaacatttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 301430 301435 . - . misc_feature unknown_122 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 301521 301542 . - . misc_feature unknown_123 ; colour "6" ; note "ctaacattctgttctattgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 301582 301587 . - . misc_feature unknown_124 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 301710 301797 . - . mRNA SPAC18B11.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18B11.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 303115 303160 . + . mRNA SPAC18B11.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18B11.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 303161 304019 . + . mRNA SPAC18B11.09c ; db_xref "SPD:11/11D11" ; systematic_id "SPAC18B11.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL218W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0009001; serine O-acetyltransferase activity
GO:0006563; L-serine metabolic process" ; gene "SPAC18B11.09c" ; product "serine O-acetyltransferase activity (predicted)" ; EC_number "2.3.1.30" ;
chromosome1 GeneDB CDS 303161 303231 . + . mRNA SPAC18B11.09c ; colour "7" ;
chromosome1 GeneDB CDS 303334 303640 . + . mRNA SPAC18B11.09c ; colour "7" ;
chromosome1 GeneDB CDS 303716 303793 . + . mRNA SPAC18B11.09c ; colour "7" ;
chromosome1 GeneDB CDS 303852 304019 . + . mRNA SPAC18B11.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 303232 303237 . + . misc_feature unknown_125 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 303316 303333 . + . misc_feature unknown_126 ; colour "6" ; note "ctaattactaaataacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 303641 303646 . + . misc_feature unknown_127 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 303698 303715 . + . misc_feature unknown_128 ; colour "6" ; note "ctaatggtgtctttccag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 303794 303799 . + . misc_feature unknown_129 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 303829 303851 . + . misc_feature unknown_130 ; colour "6" ; note "ctaacaaacaaaattttatcaag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 304435 304462 . + . mRNA SPAC18B11.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18B11.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 304463 305029 . + . mRNA SPAC18B11.08c ; db_xref "SPD:42/42C09" ; systematic_id "SPAC18B11.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR063C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; gene "SPAC18B11.08c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 304463 304535 . + . mRNA SPAC18B11.08c ; colour "10" ;
chromosome1 GeneDB CDS 304674 304731 . + . mRNA SPAC18B11.08c ; colour "10" ;
chromosome1 GeneDB CDS 304771 304860 . + . mRNA SPAC18B11.08c ; colour "10" ;
chromosome1 GeneDB CDS 304919 304955 . + . mRNA SPAC18B11.08c ; colour "10" ;
chromosome1 GeneDB CDS 305000 305029 . + . mRNA SPAC18B11.08c ; colour "10" ;
chromosome1 GeneDB misc_feature 304536 304541 . + . misc_feature unknown_131 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 304659 304673 . + . misc_feature unknown_132 ; colour "6" ; note "ctaaccctattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 304732 304737 . + . misc_feature unknown_133 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 304760 304770 . + . misc_feature unknown_134 ; colour "6" ; note "ttaacgagaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 304861 304866 . + . misc_feature unknown_135 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 304904 304918 . + . misc_feature unknown_136 ; colour "6" ; note "ttaacatttgatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 304956 304961 . + . misc_feature unknown_137 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 304987 304999 . + . misc_feature unknown_138 ; colour "6" ; note "ttaacttgtgcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 305030 305095 . + . mRNA SPAC18B11.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18B11.08c" ; systematic_id "SPAC18B11.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 305645 305722 . + . mRNA SPAC18B11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18B11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 305723 306591 . + . mRNA SPAC18B11.07c ; systematic_id "SPAC18B11.07c" ; colour "2" ; gene "rhp6 ||| ubc2 ||| SPAC18B11.07c" ; Alias "rhp6" ; db_xref "SPD:11/11F12" ; synonym "ubc2 ||| sng1" ; GO "GO:0033503; HULC complex
GO:0033503; HULC complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0004842; ubiquitin-protein ligase activity
GO:0006336; DNA replication-independent nucleosome assembly
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0031497; chromatin assembly
GO:0006338; chromatin remodeling
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006342; chromatin silencing
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0051568; histone H3-K4 methylation
GO:0006301; postreplication repair
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0031144; proteasome localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA damage checkpoint defects; qualifier=caffeine_mediated_override|required; required; db_xref=PMID:10224243; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9710635; date=20100727 ||| term=orthologous to S. cerevisiae YGL058W; date=19700101 ||| term=target is Cut8; db_xref=PMID:16096059; date=19700101 ||| term=target is Mei2; db_xref=PMID:11702950; date=20071120 ||| term=misc, chromatin assembly function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17374714; date=20070716 ||| term=misc, chromatin silencing function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17363370; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rhp6" ; product "Rad6 homolog, ubiquitin conjugating enzyme E2 Rhp6" ; EC_number "6.3.2.19" ;
chromosome1 GeneDB CDS 305723 305764 . + . mRNA SPAC18B11.07c ; colour "2" ;
chromosome1 GeneDB CDS 305812 305876 . + . mRNA SPAC18B11.07c ; colour "2" ;
chromosome1 GeneDB CDS 306090 306210 . + . mRNA SPAC18B11.07c ; colour "2" ;
chromosome1 GeneDB CDS 306316 306419 . + . mRNA SPAC18B11.07c ; colour "2" ;
chromosome1 GeneDB CDS 306468 306591 . + . mRNA SPAC18B11.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 305765 305770 . + . misc_feature unknown_139 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 305797 305811 . + . misc_feature unknown_140 ; colour "6" ; note "ttaaccaattcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 305877 305882 . + . misc_feature unknown_141 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 306074 306089 . + . misc_feature unknown_142 ; colour "6" ; note "ctaaccatttgagcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 306211 306216 . + . misc_feature unknown_143 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 306298 306315 . + . misc_feature unknown_144 ; colour "6" ; note "cttacttattggctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 306420 306425 . + . misc_feature unknown_145 ; colour "6" ; note "gtttgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 306457 306467 . + . misc_feature unknown_146 ; colour "6" ; note "ctaacttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 306592 306690 . + . mRNA SPAC18B11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18B11.07c" ; systematic_id "SPAC18B11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 306801 306963 . - . mRNA SPAC18B11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18B11.06" ; systematic_id "SPAC18B11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 306964 307947 . - . mRNA SPAC18B11.06 ; db_xref "SPD:14/14C02" ; systematic_id "SPAC18B11.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER127W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0006364; 35S primary transcript processing
GO:0005732; small nucleolar ribonucleoprotein complex" ; gene "SPAC18B11.06" ; product "U3 snoRNP-associated protein Lcp5 (predicted)" ;
chromosome1 GeneDB CDS 306964 307947 . - . mRNA SPAC18B11.06 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 307946 308011 . - . mRNA SPAC18B11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18B11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 308381 309806 . - . mRNA SPAC18B11.05 ; systematic_id "SPAC18B11.05" ; colour "7" ; gene "gpi18 ||| SPAC18B11.05" ; Alias "gpi18" ; db_xref "SPD:20/20E04" ; GO "GO:0004584; dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity
GO:0030176; integral to endoplasmic reticulum membrane
GO:0006506; GPI anchor biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR004C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "gpi18" ; product "pig-V, dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase (predicted)" ;
chromosome1 GeneDB CDS 308381 309719 . - . mRNA SPAC18B11.05 ; colour "7" ;
chromosome1 GeneDB CDS 309751 309806 . - . mRNA SPAC18B11.05 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 309807 309937 . - . mRNA SPAC18B11.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18B11.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact ||| refined to match gene structure in PMID:21270388" ;
chromosome1 GeneDB 3'-UTR 310267 310658 . - . mRNA SPAC18B11.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18B11.04" ; systematic_id "SPAC18B11.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 310659 311434 . - . mRNA SPAC18B11.04 ; systematic_id "SPAC18B11.04" ; colour "2" ; gene "ncs1 ||| SPAC18B11.04" ; Alias "ncs1" ; db_xref "EMBL:AY225216 ||| SPD:43/43B11" ; GO "GO:0006874; calcium ion homeostasis
GO:0005509; calcium ion binding
GO:0019933; cAMP-mediated signaling
GO:0031137; regulation of conjugation with cellular fusion
GO:0005737; cytoplasm
GO:0005886; plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR373W; date=19700101 ||| term=EF hand; date=19700101 ||| term=target is Git3; qualifier=predicted; db_xref=PMID:14722091; date=19700101 ||| term=modification, N-myristoylated; cv=pt_mod; db_xref=PMID:14722091; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ncs1" ; product "related to neuronal calcium sensor Ncs1" ;
chromosome1 GeneDB CDS 310659 310790 . - . mRNA SPAC18B11.04 ; colour "2" ;
chromosome1 GeneDB CDS 310837 311180 . - . mRNA SPAC18B11.04 ; colour "2" ;
chromosome1 GeneDB CDS 311299 311331 . - . mRNA SPAC18B11.04 ; colour "2" ;
chromosome1 GeneDB CDS 311371 311434 . - . mRNA SPAC18B11.04 ; colour "2" ;
chromosome1 GeneDB misc_feature 310791 310805 . - . misc_feature unknown_147 ; colour "6" ; note "ctaataattttttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 310791 310836 . - . intron SPAC18B11.04 ; Alias "ncs1" ; db_xref "SPD:43/43B11" ; systematic_id "SPAC18B11.04" ; primary_name "ncs1" ; gene "ncs1 ||| SPAC18B11.04" ; note "confirmed by mRNA; EMBL:AY225216" ;
chromosome1 GeneDB misc_feature 310831 310836 . - . misc_feature unknown_148 ; colour "6" ; note "gtttga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 311181 311195 . - . misc_feature unknown_149 ; colour "6" ; note "ctaacaagtatgcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 311181 311298 . - . intron SPAC18B11.04 ; Alias "ncs1" ; db_xref "SPD:43/43B11" ; systematic_id "SPAC18B11.04" ; primary_name "ncs1" ; gene "ncs1 ||| SPAC18B11.04" ; note "confirmed by mRNA; EMBL:AY225216" ;
chromosome1 GeneDB misc_feature 311293 311298 . - . misc_feature unknown_150 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 311332 311345 . - . misc_feature unknown_151 ; colour "6" ; note "ctaacaaatccaag, splice branch and acceptor" ;
chromosome1 GeneDB intron 311332 311370 . - . intron SPAC18B11.04 ; Alias "ncs1" ; db_xref "SPD:43/43B11" ; systematic_id "SPAC18B11.04" ; primary_name "ncs1" ; gene "ncs1 ||| SPAC18B11.04" ; note "confirmed by mRNA; EMBL:AY225216" ;
chromosome1 GeneDB misc_feature 311365 311370 . - . misc_feature unknown_152 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 311433 311533 . - . mRNA SPAC18B11.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18B11.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 311918 312263 . + . mRNA SPAC18B11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18B11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 312264 313586 . + . mRNA SPAC18B11.03c ; db_xref "SPD:23/23A07" ; systematic_id "SPAC18B11.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR212W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "; nuclear periphery
GO:0008080; N-acetyltransferase activity" ; gene "SPAC18B11.03c" ; product "N-acetyltransferase (predicted)" ;
chromosome1 GeneDB CDS 312264 313586 . + . mRNA SPAC18B11.03c ; colour "10" ;
chromosome1 GeneDB 3'-UTR 313587 313787 . + . mRNA SPAC18B11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18B11.03c" ; systematic_id "SPAC18B11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 313952 314029 . + . mRNA SPAC18B11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18B11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 314030 315214 . + . mRNA SPAC18B11.02c ; db_xref "SPD:18/18G09" ; systematic_id "SPAC18B11.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL036C and YOL066C; qualifier=N_term; date=19700101 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20080326" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0009982; pseudouridine synthase activity
GO:0031119; tRNA pseudouridine synthesis" ; gene "SPAC18B11.02c" ; product "tRNA pseudouridylate synthase (predicted)" ;
chromosome1 GeneDB CDS 314030 315214 . + . mRNA SPAC18B11.02c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 315215 315279 . + . mRNA SPAC18B11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18B11.02c" ; systematic_id "SPAC18B11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 315655 315706 . + . mRNA SPAC12G12.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 315707 317197 . + . mRNA SPAC12G12.16c ; systematic_id "SPAC12G12.16c" ; colour "7" ; gene "SPAC18B11.01c ||| SPAC12G12.16c" ; Alias "SPAC18B11.01c" ; db_xref "SPD:24/24A09" ; synonym "SPAC18B11.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=XP-G family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0006281; DNA repair
GO:0004518; nuclease activity" ; primary_name "SPAC18B11.01c" ; product "Fen1 family nuclease, XP-G family (predicted)" ;
chromosome1 GeneDB CDS 315707 317197 . + . mRNA SPAC12G12.16c ; colour "7" ;
chromosome1 GeneDB misc_feature 316967 317326 . - . misc_feature unknown_153 ; note "nominal overlap between cosmid SPAC12G12 and SPAC18B11" ;
chromosome1 GeneDB 3'-UTR 317030 317309 . - . mRNA SPAC12G12.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12G12.15" ; systematic_id "SPAC12G12.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 317198 317472 . + . mRNA SPAC12G12.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12G12.16c" ; systematic_id "SPAC12G12.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 317310 318941 . - . mRNA SPAC12G12.15 ; systematic_id "SPAC12G12.15" ; colour "7" ; gene "sif3 ||| SPAC12G12.15" ; db_xref "SPD:45/45E01" ; Alias "sif3" ; GO "GO:0031965; nuclear membrane
GO:0005515; protein binding
; spindle pole body
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YFR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sif3" ; product "Sad1 interacting factor 3 (predicted)" ; reserved_name "sif3" ;
chromosome1 GeneDB CDS 317310 317462 . - . mRNA SPAC12G12.15 ; colour "7" ;
chromosome1 GeneDB CDS 317514 318172 . - . mRNA SPAC12G12.15 ; colour "7" ;
chromosome1 GeneDB CDS 318221 318941 . - . mRNA SPAC12G12.15 ; colour "7" ;
chromosome1 GeneDB misc_feature 317463 317482 . - . misc_feature unknown_154 ; colour "2" ; note "splice branch and acceptor sequence, ctaacataagcagct tgaag" ;
chromosome1 GeneDB misc_feature 317508 317513 . - . misc_feature unknown_155 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 318173 318186 . - . misc_feature unknown_156 ; colour "2" ; note "splice branch and acceptor sequence, tattaacgccatttag" ;
chromosome1 GeneDB misc_feature 318215 318220 . - . misc_feature unknown_157 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 318940 318955 . - . mRNA SPAC12G12.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 319836 319973 . + . mRNA SPAC12G12.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 319974 321503 . + . mRNA SPAC12G12.14c ; systematic_id "SPAC12G12.14c" ; colour "2" ; gene "pfs2 ||| SPAC12G12.14c" ; Alias "pfs2" ; db_xref "SPD:24/24G11" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0006378; mRNA polyadenylation
GO:0006379; mRNA cleavage
GO:0005634; nucleus
GO:0005730; nucleolus
GO:0000070; mitotic sister chromatid segregation
GO:0031124; mRNA 3'-end processing
GO:2000045; regulation of G1/S transition of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15743824; date=19700101 ||| term=phenotype, spindle checkpoint, required; db_xref=PMID:15743824; cv=phenotype; date=20060531 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL317W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pfs2" ; product "WD repeat protein Pfs2" ;
chromosome1 GeneDB CDS 319974 321503 . + . mRNA SPAC12G12.14c ; colour "2" ;
chromosome1 GeneDB CDS_parts 321924 323978 . + . mRNA SPAC12G12.13c ; systematic_id "SPAC12G12.13c" ; colour "2" ; gene "cid14 ||| SPAC12G12.13c" ; db_xref "SPD:26/26B12" ; Alias "cid14" ; GO "GO:0031499; TRAMP complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0004652; polynucleotide adenylyltransferase activity
GO:0043630; ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolism
GO:0007000; nucleolus organization and biogenesis
GO:0031125; rRNA 3'-end processing
GO:0016075; rRNA catabolism
GO:0016077; snoRNA catabolism
GO:0016078; tRNA catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18025105; date=20090110 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; db_xref=PMID:16478992; date=20060420 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16478992; date=19700101 ||| term=orthologous to S. cerevisiae YOL115W and YNL299W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090716 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:16478992; date=20101102 ||| term=phenotype, meiosis defects; db_xref=PMID:16478992; date=20101102" ; primary_name "cid14" ; product "poly(A) polymerase Cid14" ; EC_number "2.7.7.1" ;
chromosome1 GeneDB CDS 321924 323978 . + . mRNA SPAC12G12.13c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 323979 324016 . + . mRNA SPAC12G12.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12G12.13c" ; systematic_id "SPAC12G12.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 324126 324193 . - . mRNA SPAC12G12.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12G12.12" ; systematic_id "SPAC12G12.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 324194 325280 . - . mRNA SPAC12G12.12 ; db_xref "SPD:16/16H12" ; systematic_id "SPAC12G12.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0015165; pyrimidine nucleotide sugar transmembrane transporter activity
GO:0015785; UDP-galactose transport
GO:0000139; Golgi membrane" ; colour "7" ; gene "SPAC12G12.12" ; product "NST UDP-galactose transporter (predicted)" ;
chromosome1 GeneDB CDS 324194 324407 . - . mRNA SPAC12G12.12 ; colour "7" ;
chromosome1 GeneDB CDS 324462 325166 . - . mRNA SPAC12G12.12 ; colour "7" ;
chromosome1 GeneDB CDS 325225 325280 . - . mRNA SPAC12G12.12 ; colour "7" ;
chromosome1 GeneDB misc_feature 324408 324425 . - . misc_feature unknown_158 ; colour "2" ; note "splice branch and acceptor sequence, tactaacgttccaac cttag" ;
chromosome1 GeneDB misc_feature 324456 324461 . - . misc_feature unknown_159 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 325167 325187 . - . misc_feature unknown_160 ; colour "2" ; note "splice branch and acceptor sequence, ctaacaaatcatcca aatag" ;
chromosome1 GeneDB misc_feature 325219 325224 . - . misc_feature unknown_161 ; colour "2" ; note "splice donor sequence, gtcagt" ;
chromosome1 GeneDB 5'-UTR 325279 325447 . - . mRNA SPAC12G12.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 326602 326693 . + . mRNA SPAC12G12.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 326694 327982 . + . mRNA SPAC12G12.11c ; db_xref "SPD:22/22C12" ; systematic_id "SPAC12G12.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL191C and YGL082W; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human FAM63A and FAM63B ortholog; date=20100718" ; colour "10" ; GO "GO:0005515; protein binding" ; gene "SPAC12G12.11c" ; product "DUF544 family protein" ;
chromosome1 GeneDB CDS 326694 326856 . + . mRNA SPAC12G12.11c ; colour "10" ;
chromosome1 GeneDB CDS 326942 327391 . + . mRNA SPAC12G12.11c ; colour "10" ;
chromosome1 GeneDB CDS 327498 327982 . + . mRNA SPAC12G12.11c ; colour "10" ;
chromosome1 GeneDB misc_feature 326857 326862 . + . misc_feature unknown_162 ; colour "2" ; note "splice donor sequence, gtaatc" ;
chromosome1 GeneDB misc_feature 326926 326941 . + . misc_feature unknown_163 ; colour "2" ; note "splice branch and acceptor sequence, cttactttgtattca g" ;
chromosome1 GeneDB misc_feature 327392 327397 . + . misc_feature unknown_164 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 327482 327497 . + . misc_feature unknown_165 ; colour "2" ; note "splice branch and acceptor sequence, ctaacacttcaaata g" ;
chromosome1 GeneDB 3'-UTR 327983 328087 . + . mRNA SPAC12G12.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12G12.11c" ; systematic_id "SPAC12G12.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 328196 328221 . - . mRNA SPAC12G12.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12G12.10" ; systematic_id "SPAC12G12.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 328222 329484 . - . mRNA SPAC12G12.10 ; systematic_id "SPAC12G12.10" ; colour "2" ; gene "SPAC12G12.10" ; Alias "wdr21" ; db_xref "SPD:20/20B09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DDB-box; db_xref=PMID:18794354; date=20090909 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18794354; date=20090909 ||| term=name description, after human WDR21; db_xref=PMID:18794354; cv=name_description; date=20090909" ; GO "GO:0070913; Ddb1-Wdr21 complex" ; primary_name "wdr21" ; product "WD repeat protein, human WDR21 family" ;
chromosome1 GeneDB CDS 328222 329484 . - . mRNA SPAC12G12.10 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 329485 329545 . - . mRNA SPAC12G12.10 ; ID "SPAC12G12.10" ; systematic_id "SPAC12G12.10" ; gene "SPAC12G12.10" ; note "mRNA from AU009397" ;
chromosome1 GeneDB CDS_parts 329810 332743 . - . mRNA SPAC12G12.09 ; db_xref "SPD:47/47E06" ; systematic_id "SPAC12G12.09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20090811 ||| term=species distribution, conserved in Fungi only; date=20090811 ||| term=related to S. pombe SPAC20G4.08; date=20090811 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20091123" ; colour "10" ; gene "SPAC12G12.09" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 329810 332743 . - . mRNA SPAC12G12.09 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 332742 332816 . - . mRNA SPAC12G12.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 333214 333441 . + . mRNA SPAC12G12.17 ; db_xref "PMID:18488015" ; systematic_id "SPAC12G12.17" ; controlled_curation "term=orthologous to S. cerevisiae YJL205C; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "7" ; GO "GO:0006887; exocytosis" ; gene "SPAC12G12.17" ; product "non-classical export protein 1 (predicted)" ;
chromosome1 GeneDB CDS 333214 333239 . + . mRNA SPAC12G12.17 ; colour "7" ;
chromosome1 GeneDB CDS 333291 333441 . + . mRNA SPAC12G12.17 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 333312 333694 . - . mRNA SPAC12G12.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12G12.08" ; systematic_id "SPAC12G12.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 333695 334336 . - . mRNA SPAC12G12.08 ; systematic_id "SPAC12G12.08" ; colour "7" ; gene "SPAC12G12.08 ||| mrpl6" ; Alias "mrpl6" ; db_xref "SPD:42/42F03" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR147C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "mrpl6" ; product "mitochondrial ribosomal protein subunit L16 (predicted)" ;
chromosome1 GeneDB CDS 333695 334336 . - . mRNA SPAC12G12.08 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 334335 334521 . - . mRNA SPAC12G12.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 334631 334659 . + . mRNA SPAC12G12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 334660 335945 . + . mRNA SPAC12G12.07c ; db_xref "SPD:22/22C08" ; systematic_id "SPAC12G12.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa B19C19.110; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC12G12.07c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 334660 334782 . + . mRNA SPAC12G12.07c ; colour "10" ;
chromosome1 GeneDB CDS 334830 335945 . + . mRNA SPAC12G12.07c ; colour "10" ;
chromosome1 GeneDB misc_feature 334783 334788 . + . misc_feature unknown_166 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB intron 334783 334829 . + . intron SPAC12G12.07c ; db_xref "SPD:22/22C08" ; systematic_id "SPAC12G12.07c" ; gene "SPAC12G12.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 334814 334829 . + . misc_feature unknown_167 ; colour "2" ; note "splice branch and acceptor sequence, cttactaaatctgta g" ;
chromosome1 GeneDB 3'-UTR 335946 336131 . + . mRNA SPAC12G12.07c ; ID "SPAC12G12.07c" ; db_xref "SPD:22/22C08" ; systematic_id "SPAC12G12.07c" ; gene "SPAC12G12.07c" ; note "mRNA from AU013552" ;
chromosome1 GeneDB 5'-UTR 336335 336427 . + . mRNA SPAC12G12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 336428 337519 . + . mRNA SPAC12G12.06c ; db_xref "SPD:17/17A10" ; systematic_id "SPAC12G12.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing" ; gene "SPAC12G12.06c" ; product "rRNA processing protein (predicted)" ;
chromosome1 GeneDB CDS 336428 337519 . + . mRNA SPAC12G12.06c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 337520 338041 . + . mRNA SPAC12G12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12G12.06c" ; systematic_id "SPAC12G12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 338315 338391 . + . mRNA SPAC12G12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 338392 338883 . + . mRNA SPAC12G12.05c ; systematic_id "SPAC12G12.05c" ; colour "2" ; gene "taf9 ||| SPAC12G12.05c" ; Alias "taf9" ; db_xref "SPD:04/04F10" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YMR236W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "taf9" ; product "SAGA complex/ transcription initiation factor Taf9" ;
chromosome1 GeneDB CDS 338392 338883 . + . mRNA SPAC12G12.05c ; colour "2" ;
chromosome1 GeneDB snoRNA 339548 339642 . - . snoRNA SPSNORNA.29 ; systematic_id "SPSNORNA.29" ; gene "SPSNORNA.29 ||| sno52" ; db_xref "EMBL:AJ251862" ; Alias "sno52" ; GO "GO:0030562; rRNA 2'-O-ribose methylation guide activity
GO:0031167; rRNA methylation
GO:0031428; box C/D snoRNP complex
GO:0005730; nucleolus" ; controlled_curation "term=warning, corrected strand; cv=warning; date=20100126" ; primary_name "sno52" ; product "small nucleolar RNA R52" ;
chromosome1 GeneDB 3'-UTR 339766 340106 . - . mRNA SPAC12G12.04 ; Alias "mcp60" ; ID "SPAC12G12.04" ; db_xref "SPD:36/36A03" ; systematic_id "SPAC12G12.04" ; primary_name "mcp60" ; gene "mcp60 ||| hsp60 ||| SPAC12G12.04" ; note "mRNA from AU006986" ;
chromosome1 GeneDB CDS_parts 340107 341855 . - . mRNA SPAC12G12.04 ; systematic_id "SPAC12G12.04" ; colour "2" ; gene "mcp60 ||| hsp60 ||| SPAC12G12.04" ; Alias "mcp60" ; db_xref "SPD:36/36A03" ; synonym "hsp60" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, chaperone; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YLR259C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8566770; evidence=IMP; date=20080714 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0042645; mitochondrial nucleoid
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0003697; single-stranded DNA binding
GO:0006457; protein folding
GO:0030150; protein import into mitochondrial matrix
GO:0034605; cellular response to heat
GO:0061077; chaperone-mediated protein folding" ; primary_name "mcp60" ; product "mitochondrial heat shock protein Hsp60/Mcp60" ;
chromosome1 GeneDB CDS 340107 341855 . - . mRNA SPAC12G12.04 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 341856 342080 . - . mRNA SPAC12G12.04 ; Alias "mcp60" ; ID "SPAC12G12.04" ; systematic_id "SPAC12G12.04" ; primary_name "mcp60" ; gene "mcp60 ||| hsp60 ||| SPAC12G12.04" ; note "mRNA from AU010445" ;
chromosome1 GeneDB CDS_parts 343399 345129 . - . mRNA SPAC12G12.03 ; systematic_id "SPAC12G12.03" ; colour "2" ; gene "cip2 ||| SPAC12G12.03" ; Alias "cip2" ; db_xref "SPD:45/45F08" ; GO "GO:0005737; cytoplasm
GO:0003723; RNA binding
GO:0010610; regulation of mRNA stability in response to oxidative stress
GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16407405; date=19700101 ||| term=orthologous to S. cerevisiae YBL051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:16407405; date=20090213 ||| term=name description, Csx1 Interacting Protein; db_xref=PMID:16407405; date=20100606" ; primary_name "cip2" ; product "RNA-binding protein Cip2" ;
chromosome1 GeneDB CDS 343399 345129 . - . mRNA SPAC12G12.03 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 345128 345137 . - . mRNA SPAC12G12.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 345576 345838 . - . mRNA SPAC12G12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12G12.02" ; systematic_id "SPAC12G12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 345619 349061 . + . misc_feature unknown_168 ; note "nominal overlap between cosmid c630 and c12G12" ;
chromosome1 GeneDB CDS_parts 345839 346618 . - . mRNA SPAC12G12.02 ; systematic_id "SPAC12G12.02" ; colour "7" ; gene "SPAC12G12.02 ||| SPAC630.01c" ; db_xref "SPD:09/09G01" ; synonym "SPAC630.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR272C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=region; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0006364; 35S primary transcript processing
GO:0005737; cytoplasm
GO:0005634; nucleus" ; product "rRNA processing protein, unnamed (predicted)" ;
chromosome1 GeneDB CDS 345839 346051 . - . mRNA SPAC12G12.02 ; colour "7" ;
chromosome1 GeneDB CDS 346114 346244 . - . mRNA SPAC12G12.02 ; colour "7" ;
chromosome1 GeneDB CDS 346307 346439 . - . mRNA SPAC12G12.02 ; colour "7" ;
chromosome1 GeneDB CDS 346544 346618 . - . mRNA SPAC12G12.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 346052 346064 . - . misc_feature unknown_169 ; colour "2" ; note "splice branch and acceptor sequence, tactaacctatttag" ;
chromosome1 GeneDB misc_feature 346108 346113 . - . misc_feature unknown_170 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 346245 346257 . - . misc_feature unknown_171 ; colour "2" ; note "splice branch and acceptor sequence, tactgattttctcag" ;
chromosome1 GeneDB misc_feature 346301 346306 . - . misc_feature unknown_172 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB misc_feature 346440 346454 . - . misc_feature unknown_173 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttcctttaag" ;
chromosome1 GeneDB misc_feature 346538 346543 . - . misc_feature unknown_174 ; colour "2" ; note "gtgtgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 346617 346676 . - . mRNA SPAC12G12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 346786 347194 . + . mRNA SPAC12G12.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12G12.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 347195 349912 . + . mRNA SPAC12G12.01c ; systematic_id "SPAC12G12.01c" ; colour "10" ; gene "SPAC12G12.01c ||| SPAC630.02" ; db_xref "SPD:47/47B04" ; synonym "SPAC630.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); qualifier=inferred from context; date=20060726 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL104C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; product "ubiquitin-protein ligase E3" ;
chromosome1 GeneDB CDS 347195 349912 . + . mRNA SPAC12G12.01c ; colour "10" ;
chromosome1 GeneDB 3'-UTR 349913 350031 . + . mRNA SPAC12G12.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12G12.01c" ; systematic_id "SPAC12G12.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 350477 352055 . + . mRNA SPAC630.03 ; systematic_id "SPAC630.03" ; colour "2" ; gene "arp3 ||| act2 ||| SPAC630.03" ; Alias "arp3" ; db_xref "SPD:33/33C01" ; synonym "act2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:1729722; date=19700101 ||| term=orthologous to S. cerevisiae YJR065C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005885; Arp2/3 protein complex
GO:0030479; actin cortical patch
GO:0005515; protein binding
GO:0000915; cytokinesis, contractile ring formation
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0000147; actin polymerization
GO:0051666; actin cortical patch localization
GO:0034314; Arp2/3 complex mediated actin nucleation
GO:0006897; endocytosis" ; primary_name "arp3" ; product "actin-like protein Arp3" ;
chromosome1 GeneDB CDS 350477 350511 . + . mRNA SPAC630.03 ; colour "2" ;
chromosome1 GeneDB CDS 350575 350598 . + . mRNA SPAC630.03 ; colour "2" ;
chromosome1 GeneDB CDS 350671 351199 . + . mRNA SPAC630.03 ; colour "2" ;
chromosome1 GeneDB CDS 351295 351894 . + . mRNA SPAC630.03 ; colour "2" ;
chromosome1 GeneDB CDS 351960 352055 . + . mRNA SPAC630.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 352056 352175 . + . mRNA SPAC630.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC630.03" ; systematic_id "SPAC630.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 352427 352927 . - . mRNA SPAC630.04c ; db_xref "SPD:04/04H01" ; systematic_id "SPAC630.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; date=20100606" ; colour "8" ; gene "SPAC630.04c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 352427 352927 . - . mRNA SPAC630.04c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 352926 353055 . - . mRNA SPAC630.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC630.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 353827 353899 . + . mRNA SPAC630.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC630.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 353900 356131 . + . mRNA SPAC630.05 ; systematic_id "SPAC630.05" ; colour "7" ; gene "SPAC630.05 ||| gyp7" ; Alias "gyp7" ; db_xref "SPD:38/38A11" ; GO "GO:0016192; vesicle-mediated transport
GO:0016192; intracellular protein transport
GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL234C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gyp7" ; product "GTPase activating protein Gyp7 (predicted)" ; reserved_name "gyp7" ;
chromosome1 GeneDB CDS 353900 356131 . + . mRNA SPAC630.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 355805 356232 . - . mRNA SPAC630.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC630.06c" ; systematic_id "SPAC630.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 356132 356466 . + . mRNA SPAC630.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC630.05" ; systematic_id "SPAC630.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 356233 356997 . - . mRNA SPAC630.06c ; db_xref "SPD:09/09D09" ; systematic_id "SPAC630.06c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL050C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC630.06c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 356233 356433 . - . mRNA SPAC630.06c ; colour "10" ;
chromosome1 GeneDB CDS 356511 356592 . - . mRNA SPAC630.06c ; colour "10" ;
chromosome1 GeneDB CDS 356635 356904 . - . mRNA SPAC630.06c ; colour "10" ;
chromosome1 GeneDB CDS 356984 356997 . - . mRNA SPAC630.06c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 356996 357126 . - . mRNA SPAC630.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC630.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 357510 357592 . - . mRNA SPAC630.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC630.07c" ; systematic_id "SPAC630.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 357593 358885 . - . mRNA SPAC630.07c ; db_xref "SPD:22/22D09" ; systematic_id "SPAC630.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC630.07c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 357593 358885 . - . mRNA SPAC630.07c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 358884 359051 . - . mRNA SPAC630.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC630.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 359767 360059 . - . mRNA SPAC630.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC630.08c" ; systematic_id "SPAC630.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 360060 360962 . - . mRNA SPAC630.08c ; systematic_id "SPAC630.08c" ; colour "7" ; gene "SPAC630.08c ||| erg25" ; Alias "erg25" ; db_xref "SPD:12/12D07" ; GO "GO:0000254; C-4 methylsterol oxidase activity
GO:0006696; ergosterol biosynthesis
GO:0005789; endoplasmic reticulum membrane
GO:0005506; iron ion binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "erg25" ; product "C-4 methylsterol oxidase (predicted)" ; EC_number "1.-.-.-" ; reserved_name "erg25" ;
chromosome1 GeneDB CDS 360060 360962 . - . mRNA SPAC630.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 360963 361266 . - . mRNA SPAC630.08c ; ID "SPAC630.08c" ; systematic_id "SPAC630.08c" ; gene "SPAC630.08c ||| erg25" ; note "AU010457 clone spc05912" ;
chromosome1 GeneDB CDS_parts 361557 361874 . + . mRNA SPAC630.15 ; systematic_id "SPAC630.15" ; colour "8" ; gene "SPAC630.15 ||| mug177" ; db_xref "SPD:51/51G04" ; Alias "mug177" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug177" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 361557 361874 . + . mRNA SPAC630.15 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 362248 362768 . - . mRNA SPAC630.09c ; ID "SPAC630.09c" ; db_xref "SPD:43/43D04" ; systematic_id "SPAC630.09c" ; gene "SPAC630.09c ||| mug58" ; note "mRNA from SPD234" ;
chromosome1 GeneDB CDS_parts 362769 363602 . - . mRNA SPAC630.09c ; systematic_id "SPAC630.09c" ; colour "8" ; gene "SPAC630.09c ||| mug58" ; Alias "mug58" ; db_xref "SPD:43/43D04" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR205W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "mug58" ; product "glycerate kinase (predicted)" ;
chromosome1 GeneDB CDS 362769 363602 . - . mRNA SPAC630.09c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 363603 363714 . - . mRNA SPAC630.09c ; ID "SPAC630.09c" ; systematic_id "SPAC630.09c" ; gene "SPAC630.09c ||| mug58" ; note "mRNA from SPD234" ;
chromosome1 GeneDB tRNA 365155 365226 . + . tRNA SPATRNAPRO.01 ; db_xref "EMBL:AF156541" ; systematic_id "SPATRNAPRO.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033416; TGG codon-amino acid adaptor activity" ; gene "SPATRNAPRO.01" ; product "tRNA Proline" ; note "tRNA Pro anticodon TGG, Cove score 71.02" ;
chromosome1 GeneDB 5'-UTR 365485 365549 . + . mRNA SPAC630.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC630.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 365550 366362 . + . mRNA SPAC630.10 ; db_xref "SPD:10/10D04" ; systematic_id "SPAC630.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR141C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Eukaryotes only; date=20100802 ||| term=species distribution, conserved in Vertebrates; date=20100802 ||| term=species distribution, conserved in Metazoa; date=20100802 ||| term=human c7orf60 ortholog; date=20100802" ; colour "10" ; gene "SPAC630.10" ; product "conserved eukaryotic protein, DUF3321 family" ;
chromosome1 GeneDB CDS 365550 366362 . + . mRNA SPAC630.10 ; colour "10" ;
chromosome1 GeneDB CDS_parts 366801 367531 . + . mRNA SPAC630.11 ; systematic_id "SPAC630.11" ; colour "7" ; gene "vps55 ||| SPAC630.11" ; Alias "vps55" ; db_xref "SPD:43/43A05" ; GO "GO:0006886; intracellular protein transport
GO:0045324; late endosome to vacuole transport
GO:0005770; late endosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR044C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps55" ; product "vacuolar sorting protein Vps55 (predicted)" ;
chromosome1 GeneDB CDS 366801 366817 . + . mRNA SPAC630.11 ; colour "7" ;
chromosome1 GeneDB CDS 366873 366891 . + . mRNA SPAC630.11 ; colour "7" ;
chromosome1 GeneDB CDS 366968 367040 . + . mRNA SPAC630.11 ; colour "7" ;
chromosome1 GeneDB CDS 367105 367189 . + . mRNA SPAC630.11 ; colour "7" ;
chromosome1 GeneDB CDS 367293 367348 . + . mRNA SPAC630.11 ; colour "7" ;
chromosome1 GeneDB CDS 367395 367531 . + . mRNA SPAC630.11 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 368291 368571 . + . mRNA SPAC630.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC630.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 368572 369840 . + . mRNA SPAC630.12 ; db_xref "SPD:20/20C08" ; systematic_id "SPAC630.12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR182W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0016021; integral to membrane
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0007165; signal transduction" ; gene "SPAC630.12" ; product "ER lipid phosphatase (predicted)" ;
chromosome1 GeneDB CDS 368572 369840 . + . mRNA SPAC630.12 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 369831 369944 . - . mRNA SPAC630.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC630.13c" ; systematic_id "SPAC630.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 369945 373964 . - . mRNA SPAC630.13c ; systematic_id "SPAC630.13c" ; colour "2" ; gene "tsc2 ||| SPAC630.13c" ; db_xref "SPD:48/48F09" ; Alias "tsc2" ; GO "GO:0033596; TSC1-TSC2 complex
GO:0005096; GTPase activator activity
GO:0005515; protein binding
GO:0010963; regulation of L-arginine import
GO:0010963; regulation of L-arginine import
GO:0031929; TOR signaling pathway
GO:0010958; regulation of amino acid import
GO:0034613; cellular protein localization
GO:0006995; cellular response to nitrogen starvation
GO:0033157; regulation of intracellular protein transport
GO:0043087; regulation of GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=disease associated, tumor suppressor syndrome, tuberous sclereosis; date=19700101 ||| term=human TSC2 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC18B11.11; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=phenotype, conjugation defects; cv=phenotype; qualifier=deletion; db_xref=PMID:12136010; date=20090426 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "tsc2" ; product "tuberin" ;
chromosome1 GeneDB CDS 369945 373964 . - . mRNA SPAC630.13c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 373965 374217 . - . mRNA SPAC630.13c ; Alias "tsc2" ; ID "SPAC630.13c" ; systematic_id "SPAC630.13c" ; primary_name "tsc2" ; gene "tsc2 ||| SPAC630.13c" ; note "mRNA from spc12101" ;
chromosome1 GeneDB 3'-UTR 374307 374682 . - . mRNA SPAC630.14c ; Alias "tup12" ; ID "SPAC630.14c" ; db_xref "EMBL:U92792 ||| SPD:28/28H10" ; systematic_id "SPAC630.14c" ; gene "tup12 ||| SPAC630.14c" ; primary_name "tup12" ;
chromosome1 GeneDB CDS_parts 374683 377164 . - . mRNA SPAC630.14c ; systematic_id "SPAC630.14c" ; colour "2" ; gene "tup12 ||| SPAC630.14c" ; note "a number of genes are differentially affected by mutations in tup11 and tup12 in cellular response to cation stress (PMID 15632072)" ; Alias "tup12" ; db_xref "SPD:28/28H10" ; GO "GO:0042393; histone binding
GO:0006342; chromatin silencing
GO:0045014; negative regulation of transcription by glucose
GO:0003714; transcription corepressor activity
GO:0003714; transcription corepressor activity
GO:0000790; nuclear chromatin
GO:0043156; chromatin remodeling in response to cation stress
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005634; nucleus
GO:0071473; cellular response to cation stress
GO:0043156; chromatin remodeling in response to cation stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCR084C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "tup12" ; product "transcriptional corepressor Tup12" ;
chromosome1 GeneDB CDS 374683 375830 . - . mRNA SPAC630.14c ; colour "2" ;
chromosome1 GeneDB CDS 376094 376446 . - . mRNA SPAC630.14c ; colour "2" ;
chromosome1 GeneDB CDS 376844 376931 . - . mRNA SPAC630.14c ; colour "2" ;
chromosome1 GeneDB CDS 376993 377164 . - . mRNA SPAC630.14c ; colour "2" ;
chromosome1 GeneDB intron 375831 376093 . - . intron SPAC630.14c ; Alias "tup12" ; db_xref "EMBL:U92792 ||| SPD:28/28H10" ; systematic_id "SPAC630.14c" ; gene "tup12 ||| SPAC630.14c" ; primary_name "tup12" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 376228 377618 . + . misc_feature unknown_175 ; note "nominal overlap with cosmid SPAC1751, EM:AL133154 S. pombe chromosome 1" ;
chromosome1 GeneDB intron 376447 376843 . - . intron SPAC630.14c ; Alias "tup12" ; db_xref "EMBL:U92792 ||| SPD:28/28H10" ; systematic_id "SPAC630.14c" ; gene "tup12 ||| SPAC630.14c" ; primary_name "tup12" ; note "confirmed intron" ;
chromosome1 GeneDB intron 376932 376992 . - . intron SPAC630.14c ; Alias "tup12" ; db_xref "EMBL:U92792 ||| SPD:28/28H10" ; systematic_id "SPAC630.14c" ; gene "tup12 ||| SPAC630.14c" ; primary_name "tup12" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 377419 377618 . + . misc_feature unknown_176 ; note "nominal overlap with cosmid c630" ;
chromosome1 GeneDB 3'-UTR 377915 378191 . - . mRNA SPAC1751.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1751.01c" ; systematic_id "SPAC1751.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 378192 380354 . - . mRNA SPAC1751.01c ; systematic_id "SPAC1751.01c" ; colour "2" ; gene "gti1 ||| SPAC1751.01c" ; Alias "gti1" ; db_xref "SPD:37/37G01" ; GO "GO:0035432; positive regulation of gluconate transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL007W and YHR177W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "gti1" ; product "gluconate transporter inducer Gti1" ;
chromosome1 GeneDB CDS 378192 380354 . - . mRNA SPAC1751.01c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 380353 381382 . - . mRNA SPAC1751.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1751.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 380618 384626 . + . misc_feature unknown_177 ; note "low complexity gene-free region" ;
chromosome1 GeneDB misc_feature 380953 381866 . + . misc_feature unknown_178 ; db_xref "PMID:18488015" ; controlled_curation "term=transcription in low-complexity region; date=20071008" ;
chromosome1 GeneDB misc_feature 381872 383942 . + . misc_feature unknown_179 ; db_xref "PMID:18488015" ; controlled_curation "term=transcription in low-complexity region; date=20071008" ;
chromosome1 GeneDB misc_feature 383971 384386 . + . misc_feature unknown_180 ; db_xref "PMID:18488015" ; controlled_curation "term=transcription in low-complexity region; date=20071008" ;
chromosome1 GeneDB 5'-UTR 384185 384626 . + . mRNA SPAC1751.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1751.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 384401 384619 . + . misc_feature unknown_181 ; db_xref "PMID:18488015" ; controlled_curation "term=transcription in low-complexity region; date=20071008" ;
chromosome1 GeneDB CDS_parts 384627 385220 . + . mRNA SPAC1751.04 ; db_xref "SPD:51/51H12" ; systematic_id "SPAC1751.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1751.04" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 384627 384750 . + . mRNA SPAC1751.04 ; colour "8" ;
chromosome1 GeneDB CDS 384812 384888 . + . mRNA SPAC1751.04 ; colour "8" ;
chromosome1 GeneDB CDS 384986 385060 . + . mRNA SPAC1751.04 ; colour "8" ;
chromosome1 GeneDB CDS 385125 385220 . + . mRNA SPAC1751.04 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 385221 385398 . + . mRNA SPAC1751.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1751.04" ; systematic_id "SPAC1751.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 385755 386149 . - . mRNA SPAC1751.02c ; systematic_id "SPAC1751.02c" ; colour "7" ; gene "SPAC1751.02c ||| rsm19" ; note "initiation is possibly at second Met, and upstream splicing possiply in 5' UTR" ; Alias "rsm19" ; db_xref "SPD:05/05G06" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR037C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; primary_name "rsm19" ; product "mitochondrial ribosomal protein subunit S19 (predicted)" ;
chromosome1 GeneDB CDS 385755 385887 . - . mRNA SPAC1751.02c ; colour "7" ;
chromosome1 GeneDB CDS 385938 386043 . - . mRNA SPAC1751.02c ; colour "7" ;
chromosome1 GeneDB CDS 386107 386149 . - . mRNA SPAC1751.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 385888 385902 . - . misc_feature unknown_182 ; colour "6" ; note "ctaactaaattctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 385932 385937 . - . misc_feature unknown_183 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 386044 386055 . - . misc_feature unknown_184 ; colour "6" ; note "ctgacattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 386101 386106 . - . misc_feature unknown_185 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 386307 386343 . + . mRNA SPAC1751.03 ; ID "SPAC1751.03" ; db_xref "EMBL:AB016218" ; systematic_id "SPAC1751.03" ;
chromosome1 GeneDB CDS_parts 386344 387786 . + . mRNA SPAC1751.03 ; systematic_id "SPAC1751.03" ; colour "2" ; note "was incorrectly annotated as COP9/signalosome complex, updated 8 Sept 2000, (PMID:15904532)" ; obsolete_name "csn7 ||| csn72 ||| csn7b" ; db_xref "SPD:23/23C02" ; synonym "SPAC31A2.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15904532; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation
GO:0016282; eukaryotic 43S preinitiation complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex" ; product "translation initiation factor eIF3m" ;
chromosome1 GeneDB CDS 386344 386394 . + . mRNA SPAC1751.03 ; colour "2" ;
chromosome1 GeneDB CDS 386458 386614 . + . mRNA SPAC1751.03 ; colour "2" ;
chromosome1 GeneDB CDS 386786 387786 . + . mRNA SPAC1751.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 386395 386400 . + . misc_feature unknown_186 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 386395 386457 . + . intron SPAC1751.03 ; db_xref "SPD:23/23C02" ; systematic_id "SPAC1751.03" ; note "intron confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 386440 386457 . + . misc_feature unknown_187 ; colour "6" ; note "ctaacgaaatttcaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 386615 386620 . + . misc_feature unknown_188 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome1 GeneDB intron 386615 386785 . + . intron SPAC1751.03 ; db_xref "SPD:23/23C02" ; systematic_id "SPAC1751.03" ; note "intron confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 386772 386785 . + . misc_feature unknown_189 ; colour "6" ; note "ctaacacgaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 387534 387712 . + . misc_feature unknown_190 ; note "nominal overlap between cosmid SPAC31A2 and cosmid SPAC1751" ;
chromosome1 GeneDB 3'-UTR 387787 387816 . + . mRNA SPAC1751.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1751.03" ; systematic_id "SPAC1751.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 388257 388399 . + . mRNA SPAC31A2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 388400 388960 . + . mRNA SPAC31A2.02 ; systematic_id "SPAC31A2.02" ; colour "7" ; gene "trm112 ||| SPAC31A2.02" ; Alias "trm112" ; db_xref "SPD:05/05G09" ; GO "GO:0005737; cytoplasm
GO:0035657; eRF1 methyl transferase complex
GO:0005634; nucleus
GO:0043528; tRNA (m2G10) methyltransferase complex
GO:0030234; enzyme regulator activity
GO:0018364; peptidyl-glutamine methylation
GO:0030488; tRNA methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR046W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trm112" ; product "protein and tRNA methyltransferase regulatory subunit Trm112 (predicted)" ;
chromosome1 GeneDB CDS 388400 388415 . + . mRNA SPAC31A2.02 ; colour "7" ;
chromosome1 GeneDB CDS 388452 388621 . + . mRNA SPAC31A2.02 ; colour "7" ;
chromosome1 GeneDB CDS 388721 388813 . + . mRNA SPAC31A2.02 ; colour "7" ;
chromosome1 GeneDB CDS 388859 388960 . + . mRNA SPAC31A2.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 388416 388421 . + . misc_feature unknown_191 ; colour "2" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 388441 388451 . + . misc_feature unknown_192 ; colour "2" ; note "ctaatgaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 388622 388627 . + . misc_feature unknown_193 ; colour "2" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 388707 388720 . + . misc_feature unknown_194 ; colour "2" ; note "ctaaccataactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 388814 388819 . + . misc_feature unknown_195 ; colour "2" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 388842 388858 . + . misc_feature unknown_196 ; colour "2" ; note "ctaaccttaactactag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 388961 389191 . + . mRNA SPAC31A2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.02" ; systematic_id "SPAC31A2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 389466 389542 . + . mRNA SPAC31A2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 389543 390245 . + . mRNA SPAC31A2.03 ; systematic_id "SPAC31A2.03" ; colour "7" ; gene "mrpl11 ||| SPAC31A2.03" ; Alias "mrpl11" ; db_xref "SPD:08/08C06" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL202W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mrpl11" ; product "mitochondrial ribosomal protein subunit L11 (predicted)" ;
chromosome1 GeneDB CDS 389543 389564 . + . mRNA SPAC31A2.03 ; colour "7" ;
chromosome1 GeneDB CDS 389617 390245 . + . mRNA SPAC31A2.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 389565 389570 . + . misc_feature unknown_197 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 389594 389616 . + . misc_feature unknown_198 ; colour "2" ; note "splice branch and acceptor sequence, tacttacaatttttt atttttag" ;
chromosome1 GeneDB 3'-UTR 390246 390547 . + . mRNA SPAC31A2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.03" ; systematic_id "SPAC31A2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 390455 390588 . - . mRNA SPAC31A2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.04c" ; systematic_id "SPAC31A2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 390589 391173 . - . mRNA SPAC31A2.04c ; db_xref "SPD:06/06C11" ; systematic_id "SPAC31A2.04c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005634; nucleus
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism" ; gene "SPAC31A2.04c" ; product "20S proteasome component beta 4 (predicted)" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB CDS 390589 391173 . - . mRNA SPAC31A2.04c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 391666 391837 . - . mRNA SPAC31A2.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.05c" ; systematic_id "SPAC31A2.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 391838 396877 . - . mRNA SPAC31A2.05c ; systematic_id "SPAC31A2.05c" ; colour "2" ; gene "mis4 ||| SPAC31A2.05c" ; db_xref "SPD:31/31B01" ; Alias "mis4" ; GO "GO:0005694; chromosome
GO:0032116; cohesin loading complex
GO:0000794; condensed nuclear chromosome
GO:0030892; mitotic cohesin complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0000084; S phase of mitotic cell cycle
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0007064; mitotic sister chromatid cohesion
GO:0034184; positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0007062; sister chromatid cohesion
GO:0007052; mitotic spindle organization
GO:0070317; negative regulation of G1 to G0 transition
GO:0071921; cohesin localization to chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; db_xref=PMID:7865880; cv=phenotype; date=20100630 ||| term=orthologous to S. cerevisiae YDR180W; date=19700101 ||| term=disease associated, Cornelia de Lange syndrome; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=HEAT repeat; date=20091107 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mis4" ; product "adherin, cohesin loading factor Mis4" ;
chromosome1 GeneDB CDS 391838 391915 . - . mRNA SPAC31A2.05c ; colour "2" ;
chromosome1 GeneDB CDS 391956 392612 . - . mRNA SPAC31A2.05c ; colour "2" ;
chromosome1 GeneDB CDS 392652 392787 . - . mRNA SPAC31A2.05c ; colour "2" ;
chromosome1 GeneDB CDS 392828 394611 . - . mRNA SPAC31A2.05c ; colour "2" ;
chromosome1 GeneDB CDS 394656 395123 . - . mRNA SPAC31A2.05c ; colour "2" ;
chromosome1 GeneDB CDS 395167 396502 . - . mRNA SPAC31A2.05c ; colour "2" ;
chromosome1 GeneDB CDS 396546 396741 . - . mRNA SPAC31A2.05c ; colour "2" ;
chromosome1 GeneDB CDS 396781 396877 . - . mRNA SPAC31A2.05c ; colour "2" ;
chromosome1 GeneDB misc_feature 391916 391928 . - . misc_feature unknown_199 ; colour "2" ; note "splice branch and acceptor sequence, ctgactgttttag" ;
chromosome1 GeneDB intron 391916 391955 . - . intron SPAC31A2.05c ; Alias "mis4" ; db_xref "SPD:31/31B01" ; systematic_id "SPAC31A2.05c" ; primary_name "mis4" ; gene "mis4 ||| SPAC31A2.05c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 391950 391955 . - . misc_feature unknown_200 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 392613 392627 . - . misc_feature unknown_201 ; colour "2" ; note "splice branch and acceptor sequence, tactaattaaattag" ;
chromosome1 GeneDB misc_feature 392646 392651 . - . misc_feature unknown_202 ; colour "2" ; note "splice donor sequence, gtatgc" ;
chromosome1 GeneDB misc_feature 392788 392801 . - . misc_feature unknown_203 ; colour "2" ; note "splice branch and acceptor sequence, ctaatttaatgcag" ;
chromosome1 GeneDB misc_feature 392822 392827 . - . misc_feature unknown_204 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 394612 394624 . - . misc_feature unknown_205 ; colour "2" ; note "splice branch and acceptor sequence, tactaacttacag" ;
chromosome1 GeneDB misc_feature 394650 394655 . - . misc_feature unknown_206 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 395124 395134 . - . misc_feature unknown_207 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgtgtag" ;
chromosome1 GeneDB misc_feature 395161 395166 . - . misc_feature unknown_208 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 396503 396517 . - . misc_feature unknown_209 ; colour "2" ; note "splice branch and acceptor sequence, ctgacaaatataaag" ;
chromosome1 GeneDB misc_feature 396540 396545 . - . misc_feature unknown_210 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 396742 396754 . - . misc_feature unknown_211 ; colour "2" ; note "splice branch and acceptor sequence, ttaatttacatag" ;
chromosome1 GeneDB misc_feature 396775 396780 . - . misc_feature unknown_212 ; colour "2" ; note "splice donor sequence, gtatgc" ;
chromosome1 GeneDB 5'-UTR 396876 396892 . - . mRNA SPAC31A2.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 397023 397370 . - . LTR unknown_213 ; db_xref "EMBL:SPPROREVI" ; colour "4" ; note "tf2 LTR element" ;
chromosome1 GeneDB 5'-UTR 397497 397708 . + . mRNA SPAC31A2.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 397709 399337 . + . mRNA SPAC31A2.06 ; systematic_id "SPAC31A2.06" ; colour "7" ; gene "atp25 ||| SPAC31A2.06" ; Alias "atp25" ; db_xref "SPD:26/26A06" ; GO "GO:0005743; mitochondrial inner membrane
GO:0005739; mitochondrion
GO:0033615; mitochondrial proton-transporting ATP synthase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR098C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "atp25" ; product "mitochondrial ATP synthase complex assembly protein Atp25 (predicted)" ;
chromosome1 GeneDB CDS 397709 399337 . + . mRNA SPAC31A2.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 399338 399420 . + . mRNA SPAC31A2.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.06" ; systematic_id "SPAC31A2.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 399476 399547 . - . mRNA SPAC31A2.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.07c" ; systematic_id "SPAC31A2.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 399548 402194 . - . mRNA SPAC31A2.07c ; systematic_id "SPAC31A2.07c" ; colour "7" ; gene "dbp10 ||| SPAC31A2.07c" ; Alias "dbp10" ; db_xref "SPD:38/38G05" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0004004; ATP-dependent RNA helicase activity
GO:0005730; nucleolus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDL031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "dbp10" ; product "ATP-dependent RNA helicase Dbp10 (predicted)" ;
chromosome1 GeneDB CDS 399548 401871 . - . mRNA SPAC31A2.07c ; colour "7" ;
chromosome1 GeneDB CDS 401972 402194 . - . mRNA SPAC31A2.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 401872 401886 . - . misc_feature unknown_214 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttaattatag" ;
chromosome1 GeneDB misc_feature 401966 401971 . - . misc_feature unknown_215 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB 5'-UTR 402193 402225 . - . mRNA SPAC31A2.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 402409 402782 . + . LTR unknown_216 ; colour "4" ; note "solo LTR element, 72.2% identity in 335 bp overlap w ith tf2, EMBL:SPPPROREVI" ;
chromosome1 GeneDB 5'-UTR 402886 403059 . + . mRNA SPAC31A2.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 403060 403545 . + . mRNA SPAC31A2.08 ; systematic_id "SPAC31A2.08" ; colour "7" ; gene "mrp20 ||| SPAC31A2.08" ; Alias "mrp20" ; db_xref "SPD:04/04E06" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR405W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrp20" ; product "mitochondrial ribosomal protein subunit L23 (predicted)" ;
chromosome1 GeneDB CDS 403060 403545 . + . mRNA SPAC31A2.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 403546 403767 . + . mRNA SPAC31A2.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.08" ; systematic_id "SPAC31A2.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 403813 405249 . - . mRNA SPAC31A2.09c ; systematic_id "SPAC31A2.09c" ; colour "7" ; gene "apm4 ||| SPAC31A2.09c" ; Alias "apm4" ; db_xref "SPD:44/44F07" ; GO "GO:0016192; vesicle-mediated transport
GO:0030122; AP-2 adaptor complex
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "apm4" ; product "AP-2 adaptor complex subunit Apm4 (predicted)" ;
chromosome1 GeneDB CDS 403813 405079 . - . mRNA SPAC31A2.09c ; colour "7" ;
chromosome1 GeneDB CDS 405138 405202 . - . mRNA SPAC31A2.09c ; colour "7" ;
chromosome1 GeneDB CDS 405241 405249 . - . mRNA SPAC31A2.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 405080 405098 . - . misc_feature unknown_217 ; colour "2" ; note "splice branch and acceptor sequence, ctaatttttcatttgaaag" ;
chromosome1 GeneDB misc_feature 405132 405137 . - . misc_feature unknown_218 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 405203 405215 . - . misc_feature unknown_219 ; colour "2" ; note "splice branch and acceptor sequence, ctaactatattag" ;
chromosome1 GeneDB misc_feature 405235 405240 . - . misc_feature unknown_220 ; colour "2" ; note "splice donor sequence, gttagt" ;
chromosome1 GeneDB 5'-UTR 405746 405801 . + . mRNA SPAC31A2.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 405802 407465 . + . mRNA SPAC31A2.10 ; db_xref "SPD:34/34H01" ; systematic_id "SPAC31A2.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL164C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0030695; GTPase regulator activity
GO:0007264; small GTPase mediated signal transduction" ; gene "SPAC31A2.10" ; product "Ran GTPase binding protein (predicted)" ;
chromosome1 GeneDB CDS 405802 405924 . + . mRNA SPAC31A2.10 ; colour "7" ;
chromosome1 GeneDB CDS 405964 406032 . + . mRNA SPAC31A2.10 ; colour "7" ;
chromosome1 GeneDB CDS 406134 406168 . + . mRNA SPAC31A2.10 ; colour "7" ;
chromosome1 GeneDB CDS 406268 406460 . + . mRNA SPAC31A2.10 ; colour "7" ;
chromosome1 GeneDB CDS 406503 407465 . + . mRNA SPAC31A2.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 405925 405930 . + . misc_feature unknown_221 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 405951 405963 . + . misc_feature unknown_222 ; colour "2" ; note "ataacaaattta splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 406033 406038 . + . misc_feature unknown_223 ; colour "2" ; note "splice donor sequence, gtatgc" ;
chromosome1 GeneDB misc_feature 406116 406133 . + . misc_feature unknown_224 ; colour "2" ; note "ctaacttgaattttacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 406169 406174 . + . misc_feature unknown_225 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 406254 406267 . + . misc_feature unknown_226 ; colour "2" ; note "ctaacttggaatag splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 406461 406466 . + . misc_feature unknown_227 ; colour "2" ; note "splice donor sequence," ;
chromosome1 GeneDB misc_feature 406487 406502 . + . misc_feature unknown_228 ; colour "2" ; note "ctaatctgtaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 407466 407507 . + . mRNA SPAC31A2.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.10" ; systematic_id "SPAC31A2.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 407780 408029 . - . mRNA SPAC31A2.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.11c" ; systematic_id "SPAC31A2.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 408030 409265 . - . mRNA SPAC31A2.11c ; systematic_id "SPAC31A2.11c" ; colour "2" ; gene "cuf1 ||| SPAC31A2.11c" ; db_xref "SPD:19/19G01" ; Alias "cuf1" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005507; copper ion binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0006879; iron ion homeostasis
GO:0010553; negative regulation of gene-specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of gene-specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR021C and YGL166W and YPR008W; date=19700101 ||| term=complementation, functionally complements S. cerevisiae MAC1; cv=complementation; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17477863; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=DNA binding specificity, binds CuSE 5'-[ACT]T[ACT]NNGCTG[AGT]-3'; db_xref=PMID:10593913|PMID:11278870; date=20091231 ||| term=gene expression, transcriptionally regulates ctr4; qualifier=activates; db_xref=PMID:10593913; cv=gene_ex; date=20091231 ||| term=protein sequence feature, NLS; db_xref=PMID:16467469; cv=sequence_feature; residue=11-53; date=20091231 ||| term=protein sequence feature, copper binding region; residue=328-342; evidence=IMP; db_xref=PMID:16467469; date=20091231 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:16467469; cv=localization; date=20091231" ; primary_name "cuf1" ; product "nutritional copper sensing transcription factor Cuf1" ;
chromosome1 GeneDB CDS 408030 409265 . - . mRNA SPAC31A2.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 409264 409817 . - . mRNA SPAC31A2.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 411850 412083 . + . mRNA SPAC31A2.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 412084 413874 . + . mRNA SPAC31A2.12 ; db_xref "SPD:45/45H06" ; systematic_id "SPAC31A2.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=PY motif; qualifier=predicted; db_xref=PMID:12163175; date=19700101 ||| term=orthologous to S. cerevisiae YOR018W and YFR022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005509; calcium ion binding
GO:0009966; regulation of signal transduction" ; gene "SPAC31A2.12" ; product "arrestin/PY protein 1 (predicted)" ;
chromosome1 GeneDB CDS 412084 413874 . + . mRNA SPAC31A2.12 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 413875 414216 . + . mRNA SPAC31A2.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.12" ; systematic_id "SPAC31A2.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 414272 414470 . - . mRNA SPAC31A2.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.13c" ; systematic_id "SPAC31A2.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 414471 414800 . - . mRNA SPAC31A2.13c ; systematic_id "SPAC31A2.13c" ; colour "7" ; gene "sft1 ||| SPAC31A2.13c" ; Alias "sft1" ; db_xref "SPD:01/01G12" ; GO "GO:0006886; intracellular protein transport
GO:0000139; Golgi membrane
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0005484; SNAP receptor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=orthologous to S. cerevisiae YKL006C-A; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "sft1" ; product "SNARE Sft1 (predicted)" ;
chromosome1 GeneDB CDS 414471 414629 . - . mRNA SPAC31A2.13c ; colour "7" ;
chromosome1 GeneDB CDS 414684 414800 . - . mRNA SPAC31A2.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 414630 414648 . - . misc_feature unknown_229 ; colour "2" ; note "splice branch and acceptor sequence, ctaacctgtattatt atag" ;
chromosome1 GeneDB misc_feature 414678 414683 . - . misc_feature unknown_230 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB 5'-UTR 414799 414821 . - . mRNA SPAC31A2.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 414986 415405 . + . mRNA SPAC31A2.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 415406 418371 . + . mRNA SPAC31A2.14 ; systematic_id "SPAC31A2.14" ; colour "2" ; gene "SPAC31A2.14" ; Alias "bun107" ; db_xref "SPD:47/47F04" ; synonym "wdr48" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOL087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Binding Upb Nine of 107 kDa; cv=name_description; db_xref=PMID:20838651; date=20100415" ; GO "GO:0051285; cell cortex of cell tip
; cell division site
GO:0005515; protein binding
GO:0005515; protein binding
GO:2000158; positive regulation of ubiquitin- specific protease activity
GO:0034613; cellular protein locaization
GO:0034613; cellular protein locaization" ; primary_name "bun107" ; product "WD repeat protein, human WDR48 family Bun107" ;
chromosome1 GeneDB CDS 415406 415685 . + . mRNA SPAC31A2.14 ; colour "2" ;
chromosome1 GeneDB CDS 415763 418371 . + . mRNA SPAC31A2.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 415686 415691 . + . misc_feature unknown_231 ; colour "2" ; note "splice donor sequence, gtaagc" ;
chromosome1 GeneDB misc_feature 415749 415762 . + . misc_feature unknown_232 ; colour "2" ; note "splice branch and acceptor sequence, ctaacatttattag" ;
chromosome1 GeneDB 3'-UTR 418175 418536 . - . mRNA SPAC31A2.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.15c" ; systematic_id "SPAC31A2.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 418372 418395 . + . mRNA SPAC31A2.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31A2.14" ; systematic_id "SPAC31A2.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 418537 419732 . - . mRNA SPAC31A2.15c ; systematic_id "SPAC31A2.15c" ; colour "2" ; db_xref "SPD:19/19B01" ; Alias "dcc1" ; GO "GO:0007062; sister chromatid cohesion
GO:0031390; Ctf18 RFC-like complex
GO:0003689; DNA clamp loader activity
GO:0045132; meiotic chromosome segregation
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16040599; date=19700101 ||| term=orthologous to S. cerevisiae YCL016C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dcc1" ; product "Ctf18 RFC-like complex subunit Dcc1" ;
chromosome1 GeneDB CDS 418537 419220 . - . mRNA SPAC31A2.15c ; colour "2" ;
chromosome1 GeneDB CDS 419268 419502 . - . mRNA SPAC31A2.15c ; colour "2" ;
chromosome1 GeneDB CDS 419602 419732 . - . mRNA SPAC31A2.15c ; colour "2" ;
chromosome1 GeneDB misc_feature 419221 419236 . - . misc_feature unknown_233 ; colour "2" ; note "splice branch and acceptor sequence, ctaactctcaacag" ;
chromosome1 GeneDB misc_feature 419262 419267 . - . misc_feature unknown_234 ; colour "2" ; note "splice donor sequence, gtatgc" ;
chromosome1 GeneDB misc_feature 419503 419518 . - . misc_feature unknown_235 ; colour "2" ; note "splice branch and acceptor sequence ctaacatcgataatag" ;
chromosome1 GeneDB misc_feature 419596 419601 . - . misc_feature unknown_236 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB 5'-UTR 419731 419827 . - . mRNA SPAC31A2.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 419991 420465 . + . mRNA SPAC31A2.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31A2.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 420466 423903 . + . mRNA SPAC31A2.16 ; systematic_id "SPAC31A2.16" ; colour "2" ; gene "gef2 ||| SPAC31A2.16" ; Alias "gef2" ; db_xref "SPD:48/48C09" ; GO "GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0032319; regulation of Rho GTPase activity
GO:0035023; regulation of Rho protein signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14637133; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "gef2" ; product "RhoGEF Gef2" ;
chromosome1 GeneDB CDS 420466 422887 . + . mRNA SPAC31A2.16 ; colour "2" ;
chromosome1 GeneDB CDS 422926 423153 . + . mRNA SPAC31A2.16 ; colour "2" ;
chromosome1 GeneDB CDS 423199 423307 . + . mRNA SPAC31A2.16 ; colour "2" ;
chromosome1 GeneDB CDS 423357 423903 . + . mRNA SPAC31A2.16 ; colour "2" ;
chromosome1 GeneDB misc_feature 422888 422893 . + . misc_feature unknown_237 ; colour "2" ; note "splice donor sequence, gtaata" ;
chromosome1 GeneDB misc_feature 422914 422925 . + . misc_feature unknown_238 ; colour "2" ; note "splice branch and acceptor sequence, ttaactgagcag" ;
chromosome1 GeneDB misc_feature 423154 423159 . + . misc_feature unknown_239 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 423187 423198 . + . misc_feature unknown_240 ; colour "2" ; note "splice branch and acceptor sequence, ctaacattgaag" ;
chromosome1 GeneDB misc_feature 423308 423313 . + . misc_feature unknown_241 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 423345 423356 . + . misc_feature unknown_242 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgtcgtag" ;
chromosome1 GeneDB 3'-UTR 424006 424476 . - . mRNA SPAC13C5.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13C5.01c" ; systematic_id "SPAC13C5.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 424143 424806 . + . misc_feature unknown_243 ; note "nominal overlap between cosmid SPAC13C5 and cosmid SPAC31A2" ;
chromosome1 GeneDB CDS_parts 424477 425223 . - . mRNA SPAC13C5.01c ; systematic_id "SPAC13C5.01c" ; colour "7" ; gene "SPAC13C5.01c ||| SPAC31A2.17c" ; db_xref "SPD:09/09A11" ; synonym "SPAC31A2.17c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; product "20S proteasome component alpha 3 (predicted)" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB CDS 424477 425223 . - . mRNA SPAC13C5.01c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 425986 426029 . + . mRNA SPAC13C5.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13C5.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 426030 427342 . + . mRNA SPAC13C5.02 ; systematic_id "SPAC13C5.02" ; colour "2" ; db_xref "SPD:22/22H03" ; obsolete_name "hgp1" ; Alias "dre4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=orthologous to S. cerevisiae YPR152C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Defect in REreplication; db_xref=PMID:15466421; cv=name_description; date=20100126" ; GO "GO:0006261; DNA replication
GO:0005634; nucleus" ; primary_name "dre4" ; product "DNA replication protein Dre4" ;
chromosome1 GeneDB CDS 426030 426069 . + . mRNA SPAC13C5.02 ; colour "2" ;
chromosome1 GeneDB CDS 426106 426322 . + . mRNA SPAC13C5.02 ; colour "2" ;
chromosome1 GeneDB CDS 426364 427342 . + . mRNA SPAC13C5.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 426070 426075 . + . misc_feature unknown_244 ; colour "2" ; note "splice donor sequence, gtaaat" ;
chromosome1 GeneDB misc_feature 426095 426105 . + . misc_feature unknown_245 ; colour "2" ; note "splice branch and acceptor sequence, ctaactcatag" ;
chromosome1 GeneDB misc_feature 426323 426328 . + . misc_feature unknown_246 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 426348 426363 . + . misc_feature unknown_247 ; colour "2" ; note "splice branch and acceptor sequence, ttaacttttttttta g" ;
chromosome1 GeneDB CDS_parts 427583 429318 . + . mRNA SPAC13C5.03 ; systematic_id "SPAC13C5.03" ; colour "2" ; gene "tht1 ||| SPAC13C5.03" ; Alias "tht1" ; db_xref "SPD:35/35G11" ; GO "GO:0048288; nuclear membrane fusion during karyogamy
GO:0000742; karyogamy during conjugation with cellular fusion
GO:0031965; nuclear membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR065W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "tht1" ; product "nuclear membrane protein involved in karyogamy Tht1" ;
chromosome1 GeneDB CDS 427583 427943 . + . mRNA SPAC13C5.03 ; colour "2" ;
chromosome1 GeneDB CDS 427986 428590 . + . mRNA SPAC13C5.03 ; colour "2" ;
chromosome1 GeneDB CDS 428653 429318 . + . mRNA SPAC13C5.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 427944 427949 . + . misc_feature unknown_248 ; colour "2" ; note "splice donor sequence, gtaaac" ;
chromosome1 GeneDB misc_feature 427970 427985 . + . misc_feature unknown_249 ; colour "2" ; note "splice branch and acceptor sequence, ctaacaatataacaa g" ;
chromosome1 GeneDB misc_feature 428591 428596 . + . misc_feature unknown_250 ; colour "2" ; note "splice donor sequence, gttagt" ;
chromosome1 GeneDB misc_feature 428636 428652 . + . misc_feature unknown_251 ; colour "2" ; note "splice branch and acceptor sequence, ctaacagtactgtat ag" ;
chromosome1 GeneDB 5'-UTR 430057 430129 . + . mRNA SPAC13C5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13C5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 430130 430876 . + . mRNA SPAC13C5.04 ; db_xref "SPD:09/09A12" ; systematic_id "SPAC13C5.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR126C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; GO "GO:0005737; cytoplasm" ; gene "SPAC13C5.04" ; product "amidotransferase (predicted)" ;
chromosome1 GeneDB CDS 430130 430876 . + . mRNA SPAC13C5.04 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 430877 430991 . + . mRNA SPAC13C5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13C5.04" ; systematic_id "SPAC13C5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snoRNA 431220 431301 . + . snoRNA SPSNORNA.01 ; Alias "snR40" ; systematic_id "SPSNORNA.01" ; controlled_curation "term=orthologous to S. cerevisiae snR40 and snR55; date=20070103" ; primary_name "snR40" ; gene "snR40 ||| SPSNORNA.01" ; product "small nucleolar RNA snR40 (predicted)" ;
chromosome1 GeneDB 3'-UTR 431430 431561 . - . mRNA SPAC13C5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13C5.05c" ; systematic_id "SPAC13C5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 431562 433203 . - . mRNA SPAC13C5.05c ; db_xref "SPD:34/34E04" ; systematic_id "SPAC13C5.05c" ; colour "7" ; GO "GO:0004610; phosphoacetylglucosamine mutase activity
GO:0006045; N-acetylglucosamine biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC13C5.05c" ; product "N-acetylglucosamine-phosphate mutase (predicted)" ; EC_number "5.4.2.3" ;
chromosome1 GeneDB CDS 431562 432982 . - . mRNA SPAC13C5.05c ; colour "7" ;
chromosome1 GeneDB CDS 433028 433113 . - . mRNA SPAC13C5.05c ; colour "7" ;
chromosome1 GeneDB CDS 433154 433203 . - . mRNA SPAC13C5.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 432983 432999 . - . misc_feature unknown_252 ; colour "2" ; note "splice branch and acceptor sequence, ttaataataataaat ag" ;
chromosome1 GeneDB misc_feature 433022 433027 . - . misc_feature unknown_253 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 433114 433128 . - . misc_feature unknown_254 ; colour "2" ; note "splice branch and acceptor sequence, ttaacttgatcaaag" ;
chromosome1 GeneDB misc_feature 433148 433153 . - . misc_feature unknown_255 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_RNA 434104 434843 . + . misc_RNA SPNCRNA.05 ; systematic_id "SPNCRNA.05" ; gene "prl05 ||| prl5 ||| SPNCRNA.05" ; db_xref "PMID:12497277 ||| EMBL:AB084817" ; Alias "prl5" ; synonym "prl05" ; controlled_curation "term=; qualifier=predicted; db_xref=PMID:12597277; date=20050412 ||| term=protein sequence feature, poly(A)-bearing RNA; cv=sequence_feature; qualifier=predicted; db_xref=PMID:12597277; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl5" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB 3'-UTR 434238 434523 . - . mRNA SPAC13C5.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13C5.06c" ; systematic_id "SPAC13C5.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 434524 435101 . - . mRNA SPAC13C5.06c ; systematic_id "SPAC13C5.06c" ; colour "8" ; gene "SPAC13C5.06c ||| mug121" ; db_xref "SPD:06/06B12" ; Alias "mug121" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "mug121" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 434524 434831 . - . mRNA SPAC13C5.06c ; colour "8" ;
chromosome1 GeneDB CDS 434876 435101 . - . mRNA SPAC13C5.06c ; colour "8" ;
chromosome1 GeneDB misc_feature 434832 434844 . - . misc_feature unknown_256 ; colour "2" ; note "splice branch and acceptor sequence, ctaattatatttag" ;
chromosome1 GeneDB misc_feature 434870 434875 . - . misc_feature unknown_257 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB 5'-UTR 435100 435996 . - . mRNA SPAC13C5.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13C5.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 436214 438369 . + . mRNA SPAC13C5.07 ; systematic_id "SPAC13C5.07" ; colour "2" ; db_xref "SPD:40/40H02" ; Alias "rad32" ; synonym "mre11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA damage checkpoint defects, S-phase; cv=phenotype; qualifier=deletion; residue=D25A|D65N|H134N; db_xref=PMID:19211838; date=20090428 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12944481; date=20100705 ||| term=phenotype, meiosis defects; cv=phenotype; qualifier=deletion; residue=D25A|D65N|H134N|H134L|D135V|(?528-649); db_xref=PMID:19211838; date=20090428 ||| term=phenotype, telomere maintenance defects; cv=phenotype; qualifier=deletion; residue=D25A|H134L|D135V|(?528-649); db_xref=PMID:19211838; date=20090428 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; qualifier=deletion; residue=D25A|D65N|H134L|D135V; db_xref=PMID:19211838; date=20090428 ||| term=phenotype, genome stability defects; cv=phenotype; qualifier=deletion; residue=D25A|D65N|H134N|H134L|D135V|(?528-649); db_xref=PMID:19211838; date=20090428 ||| term=phenotype, sensitive to DNA damaging agents; cv=phenotype; qualifier=deletion; residue=D25A|D65N|H134N|H134L|D135V|(?528-649); db_xref=PMID:19211838; date=20090428 ||| term=phenotype, sensitive to MMS; cv=phenotype; residue=W215C|N122S; db_xref=PMID:19211838; date=20090428 ||| term=phenotype, MRN complex formation, reduced; cv=phenotype; residue=W215C|N122S; db_xref=PMID:19211838; date=20090428 ||| term=phosphoesterase motif; qualifier=required; db_xref=PMID:9826747; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:15126332; date=19700101 ||| term=disease associated, neurological disorders; date=20090629 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=orthologous to S. cerevisiae YMR224C; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:9826747; date=20090213" ; GO "GO:0030870; Mre11 complex
GO:0008311; double-stranded DNA specific 3'-5' exodeoxyribonuclease activity
GO:0005515; protein binding
GO:0008310; single-stranded DNA specific 3'-5' exodeoxyribonuclease activity
GO:0000014; single-stranded DNA specific endodeoxyribonuclease activity
GO:0000077; DNA damage checkpoint
GO:0000729; DNA double-strand break processing
GO:0034613; cellular protein localization
GO:0000724; double-strand break repair via homologous recombination
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0006302; double-strand break repair
GO:0031573; intra-S DNA damage checkpoint
GO:0042138; meiotic DNA double-strand break formation
GO:0006311; meiotic gene conversion
GO:0007131; meiotic recombination
GO:0000723; telomere maintenance" ; primary_name "rad32" ; product "Rad32 nuclease" ;
chromosome1 GeneDB CDS 436214 436381 . + . mRNA SPAC13C5.07 ; colour "2" ;
chromosome1 GeneDB CDS 436430 436935 . + . mRNA SPAC13C5.07 ; colour "2" ;
chromosome1 GeneDB CDS 437006 437580 . + . mRNA SPAC13C5.07 ; colour "2" ;
chromosome1 GeneDB CDS 437624 437807 . + . mRNA SPAC13C5.07 ; colour "2" ;
chromosome1 GeneDB CDS 437853 438369 . + . mRNA SPAC13C5.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 436936 436941 . + . misc_feature unknown_258 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 436993 437005 . + . misc_feature unknown_259 ; colour "2" ; note "splice branch and acceptor sequence, ctaatgctttaag" ;
chromosome1 GeneDB misc_feature 437581 437586 . + . misc_feature unknown_260 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB misc_feature 437610 437623 . + . misc_feature unknown_261 ; colour "2" ; note "splice branch and acceptor sequence," ;
chromosome1 GeneDB misc_feature 437808 437813 . + . misc_feature unknown_262 ; colour "2" ; note "splice donor sequence, gtgagt" ;
chromosome1 GeneDB misc_feature 437836 437852 . + . misc_feature unknown_263 ; colour "2" ; note "splice branch and acceptor sequence, tactaaccgattaca ttag" ;
chromosome1 GeneDB misc_feature 438371 440639 . + . misc_feature SPGF005 ; db_xref "SO:0000001" ; systematic_id "SPGF005" ; note "gene-free region ||| compositionally-biased ||| possible (G-C)/(G+C) strand switch" ;
chromosome1 GeneDB misc_feature 439984 440642 . + . misc_feature unknown_264 ; note "nominal overlap with cosmid SPAC23E2 and cosmid SPAC13C5" ;
chromosome1 GeneDB misc_feature 439984 443568 . + . misc_feature SPGF005 ; db_xref "SO:0000001" ; systematic_id "SPGF005" ; note "gene-free region ||| compositionally-biased ||| possible (G-C)/(G+C) strand switch" ;
chromosome1 GeneDB misc_feature 440616 441894 . + . misc_feature unknown_265 ; db_xref "PMID:18488015" ; controlled_curation "term=transcription in low-complexity region; date=20071008" ;
chromosome1 GeneDB 5'-UTR 442157 443568 . + . mRNA SPAC23E2.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23E2.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 443569 445263 . + . mRNA SPAC23E2.01 ; systematic_id "SPAC23E2.01" ; colour "2" ; gene "fep1 ||| gaf2 ||| SPAC23E2.01" ; Alias "fep1" ; db_xref "SPD:35/35C10" ; synonym "gaf2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally represses fio1; db_xref=PMID:11956219; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally represses fip1; db_xref=PMID:11956219; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally represses frp1; db_xref=PMID:11956219; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally represses str1; db_xref=PMID:12888492; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally represses str2; db_xref=PMID:12888492; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally represses str3; db_xref=PMID:12888492; cv=gene_ex; date=20070516 ||| term=zinc finger protein; date=19700101 ||| term=zf-GATA type; date=19700101 ||| term=gene expression, constitutive; cv=gene_ex; db_xref=PMID:8799335; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17477863; date=20090110 ||| term=DNA binding specificity, binds IDP (GATA) 5'-[AT]GATAA-3'; cv=DNA_binding_specificity; date=20100302" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0043565; sequence-specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006879; iron ion homeostasis
GO:0090375; negative regulation of transcription from RNA polymerase II promoter in response to iron ion starvation
GO:0034756; regulation of iron ion transport" ; primary_name "fep1" ; product "iron-sensing transcription factor Fep1" ;
chromosome1 GeneDB CDS 443569 445263 . + . mRNA SPAC23E2.01 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 445264 445567 . + . mRNA SPAC23E2.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23E2.01" ; systematic_id "SPAC23E2.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 446000 446071 . + . tRNA SPATRNAVAL.01 ; systematic_id "SPATRNAVAL.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033426; CAC codon-amino acid adaptor activity" ; gene "SPATRNAVAL.01" ; product "tRNA Valine" ; note "tRNA Val anticodon CAC, Cove score 73.06" ;
chromosome1 GeneDB LTR 446075 446342 . + . LTR unknown_266 ; note "Tf1-type LTR" ;
chromosome1 GeneDB CDS_parts 446491 450530 . + . mRNA SPAC23E2.02 ; systematic_id "SPAC23E2.02" ; colour "2" ; gene "lsd2 ||| SPAC23E2.02 ||| swm2 ||| saf140" ; Alias "lsd2" ; db_xref "SPD:48/48F11" ; synonym "swm2 ||| saf140" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16990277; date=20070421 ||| term=HMG box; qualifier=inferred from context; date=20070421 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070421 ||| term=human KDM1B ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0033193; Lsd1/2 complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005634; nucleus
GO:0034649; histone demethylase activity (H3- monomethyl-K4 specific)
GO:0032452; histone demethylase activity
GO:0031491; nucleosome binding
GO:0003714; transcription corepressor activity
GO:0006338; chromatin remodeling
GO:0033169; histone H3-K9 demethylation
GO:0045892; negative regulation of transcription, DNA-dependent
GO:0045893; positive regulation of transcription, DNA-dependent
GO:0040020; regulation of meiosis
GO:0034605; cellular response to heat" ; primary_name "lsd2" ; product "histone demethylase SWIRM2 (predicted)" ;
chromosome1 GeneDB CDS 446491 446513 . + . mRNA SPAC23E2.02 ; colour "2" ;
chromosome1 GeneDB CDS 446679 449241 . + . mRNA SPAC23E2.02 ; colour "2" ;
chromosome1 GeneDB CDS 449295 450530 . + . mRNA SPAC23E2.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 446514 446519 . + . misc_feature unknown_267 ; colour "2" ; note "gtattc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 446663 446678 . + . misc_feature unknown_268 ; colour "2" ; note "ttaacgaatcgttaag, splice branch and acceptor" ;
chromosome1 GeneDB intron 448080 448157 . + . intron SPAC23E2.02 ; Alias "lsd2" ; db_xref "SPD:48/48F11" ; systematic_id "SPAC23E2.02" ; primary_name "lsd2" ; gene "lsd2 ||| SPAC23E2.02 ||| swm2 ||| saf140" ; note "possible in frame intron in SPAC23E2.02, not included in prediction" ;
chromosome1 GeneDB misc_feature 449242 449247 . + . misc_feature unknown_269 ; colour "2" ; note "splice donor sequence, gtaggt" ;
chromosome1 GeneDB misc_feature 449281 449294 . + . misc_feature unknown_270 ; colour "2" ; note "splice branch and acceptor sequence, ttaacattgagcag" ;
chromosome1 GeneDB 3'-UTR 450531 450627 . + . mRNA SPAC23E2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23E2.02" ; systematic_id "SPAC23E2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 450957 451209 . - . mRNA SPAC23E2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23E2.03c" ; systematic_id "SPAC23E2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 451001 451018 . - . misc_feature unknown_271 ; colour "6" ; note "ttaactatttcgttgtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 451001 451261 . - . intron SPAC23E2.03c ; Alias "ste7" ; db_xref "SPD:46/46C06" ; systematic_id "SPAC23E2.03c" ; primary_name "ste7" ; gene "ste7 ||| SPAC23E2.03c" ; note "splice junction removed from prediction, evidence: No intron was detected in cDNA: The ste7 gene mutated at the splicing donar site predicted in SPAC23E2.03c shows no deffect in conjugation process; GFP fluorescence was detected in cells transformed with a plasmid comprising the ste7-GFP fusion gene(w/o intron)- splice removed" ;
chromosome1 GeneDB CDS_parts 451210 452919 . - . mRNA SPAC23E2.03c ; systematic_id "SPAC23E2.03c" ; colour "2" ; gene "ste7 ||| SPAC23E2.03c" ; Alias "ste7" ; db_xref "SPD:46/46C06" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:0000747; conjugation with cellular fusion
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ste7" ; product "meiotic suppressor protein Ste7" ;
chromosome1 GeneDB CDS 451210 452919 . - . mRNA SPAC23E2.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 451256 451261 . - . misc_feature unknown_272 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 452918 453541 . - . mRNA SPAC23E2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23E2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 452920 453983 . + . misc_feature SPGF006 ; db_xref "SO:0000001" ; systematic_id "SPGF006" ; note "gene-free region ||| compositionally-biased ||| possible (G-C)/(G+C) strand switch" ;
chromosome1 GeneDB misc_feature 453983 453983 . + . misc_feature unknown_273 ; note "nominal overlap between cosmid SPAC24H6 and cosmid SPAC23E2" ;
chromosome1 GeneDB misc_feature 453983 456526 . + . misc_feature SPGF006 ; db_xref "SO:0000001" ; systematic_id "SPGF006" ; note "gene-free region ||| compositionally-biased ||| possible (G-C)/(G+C) strand switch" ;
chromosome1 GeneDB rRNA 456527 456645 . + . rRNA SPRRNA.11 ; Alias "5SrRNA" ; systematic_id "SPRRNA.11" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; primary_name "5SrRNA" ; gene "5SrRNA ||| SPRRNA.11" ; product "5S rRNA" ;
chromosome1 GeneDB 3'-UTR 456950 457060 . - . mRNA SPAC24H6.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24H6.13" ; systematic_id "SPAC24H6.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 457061 459676 . - . mRNA SPAC24H6.13 ; db_xref "SPD:38/38F07" ; systematic_id "SPAC24H6.13" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL084W and YMR266W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0006893; Golgi to plasma membrane transport" ; gene "SPAC24H6.13" ; product "DUF221 family protein implicated in Golgi to plasma membrane transport (predicted)" ;
chromosome1 GeneDB CDS 457061 459676 . - . mRNA SPAC24H6.13 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 459675 459865 . - . mRNA SPAC24H6.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24H6.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 461735 461938 . + . mRNA SPAC24H6.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24H6.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 461939 463273 . + . mRNA SPAC24H6.12c ; systematic_id "SPAC24H6.12c" ; colour "2" ; gene "uba3 ||| SPAC24H6.12c" ; Alias "uba3" ; db_xref "SPD:20/20F06" ; GO "GO:0019781; NEDD8 activating enzyme activity
GO:0045116; protein neddylation
GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10880460; date=20100708 ||| term=orthologous to S. cerevisiae YPR066W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "uba3" ; product "NEDD8 activating enzyme" ;
chromosome1 GeneDB CDS 461939 463273 . + . mRNA SPAC24H6.12c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 463274 463388 . + . mRNA SPAC24H6.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24H6.12c" ; systematic_id "SPAC24H6.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 464542 465298 . + . mRNA SPAC24H6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24H6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 465299 468175 . + . mRNA SPAC24H6.11c ; db_xref "SPD:29/29F09" ; systematic_id "SPAC24H6.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; gene "SPAC24H6.11c" ; product "sulfate transporter (predicted)" ;
chromosome1 GeneDB CDS 465299 468175 . + . mRNA SPAC24H6.11c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 468176 468283 . + . mRNA SPAC24H6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24H6.11c" ; systematic_id "SPAC24H6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 468720 469826 . + . mRNA SPAC24H6.10c ; db_xref "SPD:17/17D05" ; systematic_id "SPAC24H6.10c" ; colour "7" ; GO "GO:0003849; 3-deoxy-7-phosphoheptulonate synthase activity
GO:0009073; aromatic amino acid family biosynthesis
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0009073; aromatic amino acid family biosynthesis, shikimate pathway" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR035W and YBR249C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPAC24H6.10c" ; product "phospho-2-dehydro-3-deoxyheptonate aldolase (predicted)" ; EC_number "2.5.1.54" ;
chromosome1 GeneDB CDS 468720 469826 . + . mRNA SPAC24H6.10c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 469827 469890 . + . mRNA SPAC24H6.10c ; ID "SPAC24H6.10c" ; db_xref "SPD:17/17D05" ; systematic_id "SPAC24H6.10c" ; gene "SPAC24H6.10c" ; note "mRNA from AU007393" ;
chromosome1 GeneDB 3'-UTR 469981 470582 . - . mRNA SPAC24H6.09 ; ID "SPAC24H6.09" ; db_xref "SPD:38/38C05" ; systematic_id "SPAC24H6.09" ; note "mRNA from AU013296" ;
chromosome1 GeneDB CDS_parts 470583 472899 . - . mRNA SPAC24H6.09 ; systematic_id "SPAC24H6.09" ; colour "2" ; db_xref "SPD:38/38C05" ; Alias "gef1" ; GO "GO:0032153; cell division site
GO:0030428; cell septum
GO:0005737; cytoplasm
GO:0031097; medial ring
GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0005515; protein binding
GO:0032488; Cdc42 protein signal tansduction
GO:0032319; regulation of Rho GTPase activity
GO:0035023; regulation of Rho protein signal transduction
GO:0032955; regulation of barrier septum formation
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12529446; date=19700101 ||| term=phenotype, cell morphology, round cells; qualifier=overexpression; db_xref=PMID:12972551; cv=phenotype; date=20090426 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12972551; cv=phenotype; date=20090426 ||| term=pathway, Ras1-Scd; db_xref=PMID:12529446; date=19700101 ||| term=human DNMBP ortholog; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gef1" ; product "RhoGEF Gef1" ;
chromosome1 GeneDB CDS 470583 472802 . - . mRNA SPAC24H6.09 ; colour "2" ;
chromosome1 GeneDB CDS 472858 472899 . - . mRNA SPAC24H6.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 472803 472819 . - . misc_feature unknown_274 ; colour "6" ; note "ttaacaatgttgatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 472852 472857 . - . misc_feature unknown_275 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 472898 472957 . - . mRNA SPAC24H6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24H6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 473837 474034 . - . mRNA SPAC24H6.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24H6.08" ; systematic_id "SPAC24H6.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 474035 474697 . - . mRNA SPAC24H6.08 ; db_xref "SPD:07/07F04" ; systematic_id "SPAC24H6.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC24H6.08" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 474035 474697 . - . mRNA SPAC24H6.08 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 474696 474826 . - . mRNA SPAC24H6.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24H6.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 475433 475492 . - . mRNA SPAC24H6.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24H6.07" ; systematic_id "SPAC24H6.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 475493 476113 . - . mRNA SPAC24H6.07 ; systematic_id "SPAC24H6.07" ; colour "2" ; gene "rps901 ||| rps9-1 ||| SPAC24H6.07 ||| rps9a" ; Alias "rps901" ; db_xref "SPD:07/07A04" ; synonym "rps9-1 ||| rps9a" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL081W and YBR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps901" ; product "40S ribosomal protein S9" ;
chromosome1 GeneDB CDS 475493 476053 . - . mRNA SPAC24H6.07 ; colour "2" ;
chromosome1 GeneDB CDS 476099 476113 . - . mRNA SPAC24H6.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 476054 476068 . - . misc_feature unknown_276 ; colour "6" ; note "ctaacattaaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 476093 476098 . - . misc_feature unknown_277 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB promoter 476164 476171 . - . promoter unknown_278 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB promoter 476183 476192 . - . promoter unknown_279 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB 3'-UTR 476476 476548 . - . mRNA SPAC24H6.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24H6.06" ; systematic_id "SPAC24H6.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 476549 478696 . - . mRNA SPAC24H6.06 ; systematic_id "SPAC24H6.06" ; colour "2" ; gene "sld3 ||| SPAC24H6.06 ||| mug175" ; Alias "sld3" ; db_xref "SPD:37/37E10" ; synonym "mug175" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL113W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0006270; DNA replication initiation
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0005515; protein binding" ; primary_name "sld3" ; product "DNA replication pre-initiation complex subunit Sld3" ;
chromosome1 GeneDB CDS 476549 477542 . - . mRNA SPAC24H6.06 ; colour "2" ;
chromosome1 GeneDB CDS 477636 478606 . - . mRNA SPAC24H6.06 ; colour "2" ;
chromosome1 GeneDB CDS 478655 478696 . - . mRNA SPAC24H6.06 ; colour "2" ;
chromosome1 GeneDB misc_feature 477543 477555 . - . misc_feature unknown_280 ; colour "6" ; note "ctaatgataacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 477630 477635 . - . misc_feature unknown_281 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 478607 478620 . - . misc_feature unknown_282 ; colour "6" ; note "ttgacatcttttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 478607 478654 . - . intron SPAC24H6.06 ; Alias "sld3" ; db_xref "SPD:37/37E10" ; systematic_id "SPAC24H6.06" ; primary_name "sld3" ; gene "sld3 ||| SPAC24H6.06 ||| mug175" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 478649 478654 . - . misc_feature unknown_283 ; colour "6" ; note "gtactt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 478695 478730 . - . mRNA SPAC24H6.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24H6.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 479280 479749 . - . mRNA SPAC24H6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24H6.05" ; systematic_id "SPAC24H6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 479750 481540 . - . mRNA SPAC24H6.05 ; systematic_id "SPAC24H6.05" ; colour "2" ; gene "cdc25 ||| sal2 ||| SPAC24H6.05" ; Alias "cdc25" ; db_xref "SPD:40/40F12" ; synonym "sal2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:*****; date=20100630 ||| term=modification, ubiquitinated; db_xref=PMID:8635463; cv=pt_mod; date=20081001 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=orthologous to S. cerevisiae YMR036C; date=19700101 ||| term=target is Cdc2; qualifier=dephosphorylates|activates; db_xref=PMID:1819507; date=20090826 ||| term=target of Srk1; qualifier=phosphorylated_by; db_xref=PMID:15629716; date=20100224 ||| term=phenotype, cell morphology, small cells; qualifier=overexpression; db_xref=PMID:3955656; date=20101124" ; clustalx_file "clustalx/c24H6.tab.seq.00001.out" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004725; protein tyrosine phosphatase activity
; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0023034; intracellular signaling cascade
GO:0031662; positive regulation of cyclin- dependent protein kinase activity during G2/M
GO:0006470; protein amino acid dephosphorylation
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0008361; regulation of cell size" ; primary_name "cdc25" ; product "M phase inducer phosphatase Cdc25" ; EC_number "3.1.3.48" ;
chromosome1 GeneDB CDS 479750 481540 . - . mRNA SPAC24H6.05 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 481539 482361 . - . mRNA SPAC24H6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24H6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 483137 483446 . - . mRNA SPAC24H6.04 ; Alias "hxk1" ; ID "SPAC24H6.04" ; db_xref "EMBL:X92894 ||| SPD:23/23D11" ; systematic_id "SPAC24H6.04" ; gene "hxk1 ||| SPAC24H6.04" ; primary_name "hxk1" ;
chromosome1 GeneDB CDS_parts 483447 484901 . - . mRNA SPAC24H6.04 ; systematic_id "SPAC24H6.04" ; colour "2" ; gene "hxk1 ||| SPAC24H6.04" ; Alias "hxk1" ; db_xref "SPD:23/23D11" ; GO "GO:0004396; hexokinase activity
GO:0006096; glycolysis
GO:0008865; fructokinase activity
GO:0019158; mannokinase activity
GO:0004340; glucokinase activity
GO:0006002; fructose 6-phosphate metabolism
GO:0006013; mannose metabolism
GO:0051156; glucose 6-phosphate metabolism
GO:0005524; ATP binding
GO:0009051; pentose-phosphate shunt, oxidative branch" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression repressed by glucose; db_xref=PMID:8549830; cv=gene_ex; date=20061122 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:9666312; date=20061127 ||| term=orthologous to S. cerevisiae YFR053C and YGL253W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complements S. cerevisiae HXK1; db_xref=PMID:8549830; date=20101012" ; primary_name "hxk1" ; product "hexokinase 1" ; EC_number "2.7.1.1 ||| 2.7.1.4 ||| 2.7.1.7 ||| 2.7.1.2" ;
chromosome1 GeneDB CDS 483447 484901 . - . mRNA SPAC24H6.04 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 484902 485015 . - . mRNA SPAC24H6.04 ; Alias "hxk1" ; ID "SPAC24H6.04" ; db_xref "EMBL:X92894" ; systematic_id "SPAC24H6.04" ; gene "hxk1 ||| SPAC24H6.04" ; primary_name "hxk1" ;
chromosome1 GeneDB misc_RNA 485703 486330 . + . misc_RNA SPNCRNA.551 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.551" ; synonym "SPNG2AF15" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB 3'-UTR 485772 485959 . - . mRNA SPAC24H6.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24H6.03" ; systematic_id "SPAC24H6.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 485960 488615 . - . mRNA SPAC24H6.03 ; systematic_id "SPAC24H6.03" ; colour "2" ; gene "cul3 ||| pcu3 ||| SPAC24H6.03" ; Alias "cul3" ; db_xref "SPD:40/40H10" ; synonym "pcu3" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=modification, neddylated; db_xref=PMID:15769255; cv=pt_mod; date=20100309 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9990507; date=20100708" ; GO "GO:0019005; SCF ubiquitin ligase complex
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle" ; primary_name "cul3" ; product "cullin 3" ;
chromosome1 GeneDB CDS 485960 486131 . - . mRNA SPAC24H6.03 ; colour "2" ;
chromosome1 GeneDB CDS 486188 486597 . - . mRNA SPAC24H6.03 ; colour "2" ;
chromosome1 GeneDB CDS 486649 486822 . - . mRNA SPAC24H6.03 ; colour "2" ;
chromosome1 GeneDB CDS 486867 486931 . - . mRNA SPAC24H6.03 ; colour "2" ;
chromosome1 GeneDB CDS 486984 487093 . - . mRNA SPAC24H6.03 ; colour "2" ;
chromosome1 GeneDB CDS 487133 488517 . - . mRNA SPAC24H6.03 ; colour "2" ;
chromosome1 GeneDB CDS 488574 488615 . - . mRNA SPAC24H6.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 486132 486147 . - . misc_feature unknown_284 ; colour "6" ; note "ctaacagtaaattaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 486182 486187 . - . misc_feature unknown_285 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 486598 486614 . - . misc_feature unknown_286 ; colour "6" ; note "ctaacaatcctatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 486643 486648 . - . misc_feature unknown_287 ; colour "6" ; note "gtatag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 486823 486833 . - . misc_feature unknown_288 ; colour "6" ; note "ctaacagttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 486861 486866 . - . misc_feature unknown_289 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 486932 486942 . - . misc_feature unknown_290 ; colour "6" ; note "ttaatgcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 486978 486983 . - . misc_feature unknown_291 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 487094 487106 . - . misc_feature unknown_292 ; colour "6" ; note "ttaacacttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 487127 487132 . - . misc_feature unknown_293 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 488518 488528 . - . misc_feature unknown_294 ; colour "6" ; note "ctgacatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 488568 488573 . - . misc_feature unknown_295 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 488614 488686 . - . mRNA SPAC24H6.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24H6.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 488742 488778 . + . mRNA SPAC24H6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24H6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 488779 489350 . + . mRNA SPAC24H6.02c ; db_xref "SPD:06/06A11" ; systematic_id "SPAC24H6.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-DNL; date=19700101 ||| term=orthologous to S. cerevisiae YNL310C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005744; mitochondrial inner membrane presequence translocase complex
GO:0005759; mitochondrial matrix
GO:0030544; Hsp70 protein binding
GO:0030150; protein import into mitochondrial matrix
GO:0051082; unfolded protein binding" ; gene "SPAC24H6.02c" ; product "TIM23 translocase complex subunit Tim15 (predicted)" ;
chromosome1 GeneDB CDS 488779 489029 . + . mRNA SPAC24H6.02c ; colour "7" ;
chromosome1 GeneDB CDS 489074 489350 . + . mRNA SPAC24H6.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 489030 489035 . + . misc_feature unknown_296 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 489059 489073 . + . misc_feature unknown_297 ; colour "6" ; note "ctaaccaaatgaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 489351 489402 . + . mRNA SPAC24H6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24H6.02c" ; systematic_id "SPAC24H6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 490016 492011 . + . mRNA SPAC24H6.01c ; db_xref "SPD:51/51E04" ; systematic_id "SPAC24H6.01c" ; synonym "SPAPB21F2.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL084C and YPL189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005886; plasma membrane
GO:0008374; O-acyltransferase activity
GO:0006506; GPI anchor biosynthesis
GO:0015793; glycerol transport" ; product "membrane bound O-acyltransferase, MBOAT (predicted)" ;
chromosome1 GeneDB CDS 490016 490262 . + . mRNA SPAC24H6.01c ; colour "7" ;
chromosome1 GeneDB CDS 490338 490771 . + . mRNA SPAC24H6.01c ; colour "7" ;
chromosome1 GeneDB CDS 490812 490931 . + . mRNA SPAC24H6.01c ; colour "7" ;
chromosome1 GeneDB CDS 490979 491149 . + . mRNA SPAC24H6.01c ; colour "7" ;
chromosome1 GeneDB CDS 491186 491858 . + . mRNA SPAC24H6.01c ; colour "7" ;
chromosome1 GeneDB CDS 491905 492011 . + . mRNA SPAC24H6.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 490263 490268 . + . misc_feature unknown_298 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 490323 490337 . + . misc_feature unknown_299 ; colour "6" ; note "ctaactaggcgtcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 490719 490815 . + . misc_feature unknown_300 ; note "485 (+1) 36737 36833 SPAC24H6 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 490772 490777 . + . misc_feature unknown_301 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 490797 490811 . + . misc_feature unknown_302 ; colour "6" ; note "ttaatctttttacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 490815 490815 . - . misc_feature unknown_303 ; note "single base overlap with cosmid SPAC23E2, EM:Z68887 S.pombe chromosome 1" ;
chromosome1 GeneDB misc_RNA 491816 492201 . - . misc_RNA SPNCRNA.47 ; Alias "prl47" ; db_xref "EMBL:AB084859 ||| PMID:12597277" ; systematic_id "SPNCRNA.47" ; controlled_curation "term=; qualifier=predicted; db_xref=PMID:12597277; date=20050412 ||| term=protein sequence feature, poly(A)-bearing RNA; cv=sequence_feature; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl47" ; gene "prl47 ||| SPNCRNA.47" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB 5'-UTR 492426 492460 . + . mRNA SPAPB21F2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB21F2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 492461 497689 . + . mRNA SPAPB21F2.02 ; systematic_id "SPAPB21F2.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR141C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006895; Golgi to endosome transport
GO:0008360; regulation of cell shape
GO:0007029; endoplasmic reticulum organization and biogenesis" ; gene "SPAPB21F2.02" ; product "Dopey family protein (predicted)" ;
chromosome1 GeneDB CDS 492461 492476 . + . mRNA SPAPB21F2.02 ; colour "7" ;
chromosome1 GeneDB CDS 492512 492630 . + . mRNA SPAPB21F2.02 ; colour "7" ;
chromosome1 GeneDB CDS 492673 494385 . + . mRNA SPAPB21F2.02 ; colour "7" ;
chromosome1 GeneDB CDS 494423 494615 . + . mRNA SPAPB21F2.02 ; colour "7" ;
chromosome1 GeneDB CDS 494667 497689 . + . mRNA SPAPB21F2.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 497690 497870 . + . mRNA SPAPB21F2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB21F2.02" ; systematic_id "SPAPB21F2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 498111 498170 . + . mRNA SPAPB21F2.03 ; ID "SPAPB21F2.03" ; systematic_id "SPAPB21F2.03" ; gene "SPAPB21F2.03" ; note "mRNA from AU010333" ;
chromosome1 GeneDB CDS_parts 498171 498730 . + . mRNA SPAPB21F2.03 ; systematic_id "SPAPB21F2.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR081C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0030515; snoRNA binding
GO:0006364; rRNA processing
GO:0030686; 90S preribosome" ; gene "SPAPB21F2.03" ; product "ribosome biogenesis protein (predicted)" ; note "confirmed intron" ;
chromosome1 GeneDB CDS 498171 498173 . + . mRNA SPAPB21F2.03 ; colour "7" ;
chromosome1 GeneDB CDS 498215 498730 . + . mRNA SPAPB21F2.03 ; colour "7" ;
chromosome1 GeneDB intron 498174 498214 . + . intron SPAPB21F2.03 ; systematic_id "SPAPB21F2.03" ; gene "SPAPB21F2.03" ; note "confirmed intron" ;
chromosome1 GeneDB 3'-UTR 498731 498862 . + . mRNA SPAPB21F2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB21F2.03" ; systematic_id "SPAPB21F2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 498915 499283 . - . mRNA SPAC227.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.01c" ; systematic_id "SPAC227.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 499284 500405 . - . mRNA SPAC227.01c ; systematic_id "SPAC227.01c" ; colour "7" ; gene "SPAPB21F2.04c ||| SPAC227.01c" ; Alias "SPAPB21F2.04c" ; db_xref "SPD:50/50C11" ; synonym "SPAPB21F2.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EXS family protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR414C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016021; integral to membrane
GO:0006486; protein amino acid glycosylation
GO:0006621; protein retention in ER" ; primary_name "SPAPB21F2.04c" ; product "Erd1 homolog (predicted)" ;
chromosome1 GeneDB CDS 499284 500405 . - . mRNA SPAC227.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 499419 499512 . + . misc_feature unknown_304 ; note "nominal overlap with SPAC227 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 500404 500620 . - . mRNA SPAC227.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 500805 501116 . - . mRNA SPAC227.19c ; ID "SPAC227.19c" ; db_xref "EMBL:AU006865" ; systematic_id "SPAC227.19c" ;
chromosome1 GeneDB CDS_parts 501117 501485 . - . mRNA SPAC227.19c ; systematic_id "SPAC227.19c" ; colour "10" ; gene "SPAC227.19c" ; note "some fungal orthologs seem to be longer, but this small C-terminal region is conserved" ; db_xref "PMID:18488015" ; obsolete_name "SPNCRNA.85" ; controlled_curation "term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080102" ; product "conserved protein" ;
chromosome1 GeneDB CDS 501117 501248 . - . mRNA SPAC227.19c ; colour "10" ;
chromosome1 GeneDB CDS 501366 501485 . - . mRNA SPAC227.19c ; colour "10" ;
chromosome1 GeneDB 3'-UTR 501334 501766 . - . mRNA SPAC227.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.02c" ; systematic_id "SPAC227.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 501767 502384 . - . mRNA SPAC227.02c ; db_xref "SPD:06/06H10" ; systematic_id "SPAC227.02c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0005634; nucleus" ; gene "SPAC227.02c" ; product "rRNA processing protein Rrp15 (predicted)" ;
chromosome1 GeneDB CDS 501767 502384 . - . mRNA SPAC227.02c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 502711 502977 . - . mRNA SPAC227.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.03c" ; systematic_id "SPAC227.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 502978 504093 . - . mRNA SPAC227.03c ; db_xref "SPD:17/17E11" ; systematic_id "SPAC227.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL006W and YEL006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=19700101" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0051724; NAD transporter activity
GO:0043132; NAD transport
GO:0006839; mitochondrial pyruvate transport" ; gene "SPAC227.03c" ; product "mitochondrial NAD+ transporter (predicted)" ;
chromosome1 GeneDB CDS 502978 504093 . - . mRNA SPAC227.03c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 504857 505052 . + . mRNA SPAC227.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 505053 505592 . + . mRNA SPAC227.04 ; db_xref "SPD:05/05D12" ; systematic_id "SPAC227.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006914; autophagy
GO:0007034; vacuolar transport" ; gene "SPAC227.04" ; product "autophagy C terminal domain family protein (predicted)" ; note "related to Apg3, but missing N-terminal domain" ;
chromosome1 GeneDB CDS 505053 505592 . + . mRNA SPAC227.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 505593 505626 . + . mRNA SPAC227.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.04" ; systematic_id "SPAC227.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 505902 505983 . + . mRNA SPAC227.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 505984 506355 . + . mRNA SPAC227.05 ; db_xref "SPD:02/02F01" ; systematic_id "SPAC227.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL153C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex" ; gene "SPAC227.05" ; product "prefoldin subunit 4 (predicted)" ;
chromosome1 GeneDB CDS 505984 506355 . + . mRNA SPAC227.05 ; colour "7" ;
chromosome1 GeneDB CDS_parts 506543 507292 . + . mRNA SPAC227.06 ; db_xref "SPD:09/09B06" ; systematic_id "SPAC227.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Yip1 family; date=19700101 ||| term=orthologous to S. cerevisiae YGL161C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0016192; vesicle-mediated transport
GO:0005794; Golgi apparatus
GO:0017137; Rab GTPase binding" ; gene "SPAC227.06" ; product "Rab GTPase binding (predicted)" ;
chromosome1 GeneDB CDS 506543 507292 . + . mRNA SPAC227.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 507293 507496 . + . mRNA SPAC227.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.06" ; systematic_id "SPAC227.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 507550 508135 . - . mRNA SPAC227.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.07c" ; systematic_id "SPAC227.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 508136 509691 . - . mRNA SPAC227.07c ; systematic_id "SPAC227.07c" ; colour "2" ; gene "pab1 ||| SPAC227.07c" ; Alias "pab1" ; db_xref "SPD:25/25B10" ; GO "GO:0008360; regulation of cell shape
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0071775; regulation of cell cycle cytokinesis
GO:0006417; regulation of translation
GO:0008601; protein phosphatase type 2A regulator activity
GO:0000159; protein phosphatase type 2A complex
GO:0034047; regulation of protein phophatase type 2A activity
GO: SF also remove parent; db_xref=regulation of establishment of cell polarity involved in cell shape" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL190C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pab1" ; product "protein phosphatase regulatory subunit Pab1" ;
chromosome1 GeneDB CDS 508136 508159 . - . mRNA SPAC227.07c ; colour "2" ;
chromosome1 GeneDB CDS 508203 509485 . - . mRNA SPAC227.07c ; colour "2" ;
chromosome1 GeneDB CDS 509563 509603 . - . mRNA SPAC227.07c ; colour "2" ;
chromosome1 GeneDB CDS 509648 509691 . - . mRNA SPAC227.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 508160 508174 . - . misc_feature unknown_305 ; colour "6" ; note "ctaatgtttcaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 508197 508202 . - . misc_feature unknown_306 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 509486 509498 . - . misc_feature unknown_307 ; colour "6" ; note "ctaacaagtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 509557 509562 . - . misc_feature unknown_308 ; colour "6" ; note "gtattg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 509604 509615 . - . misc_feature unknown_309 ; colour "6" ; note "ctaactctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 509642 509647 . - . misc_feature unknown_310 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 509690 509861 . - . mRNA SPAC227.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 510521 510668 . - . mRNA SPAC227.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.08c" ; systematic_id "SPAC227.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 510669 511336 . - . mRNA SPAC227.08c ; systematic_id "SPAC227.08c" ; colour "2" ; gene "yth1 ||| SPAC227.08c" ; Alias "yth1" ; db_xref "SPD:07/07F09" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YPR107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "yth1" ; product "mRNA cleavage and polyadenylation specificity factor complex Yth1" ;
chromosome1 GeneDB CDS 510669 510720 . - . mRNA SPAC227.08c ; colour "2" ;
chromosome1 GeneDB CDS 510780 511070 . - . mRNA SPAC227.08c ; colour "2" ;
chromosome1 GeneDB CDS 511167 511336 . - . mRNA SPAC227.08c ; colour "2" ;
chromosome1 GeneDB misc_feature 510721 510734 . - . misc_feature unknown_311 ; colour "6" ; note "ctaacatgttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 510774 510779 . - . misc_feature unknown_312 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 511071 511085 . - . misc_feature unknown_313 ; colour "6" ; note "ctaatattatataag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 511161 511166 . - . misc_feature unknown_314 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 511335 511346 . - . mRNA SPAC227.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 511678 511806 . + . mRNA SPAC227.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 511807 513060 . + . mRNA SPAC227.09 ; db_xref "SPD:20/20A03" ; systematic_id "SPAC227.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR113W and YKL132C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0009396; folic acid and derivative biosynthesis
GO:0005737; cytoplasm
GO:0004326; tetrahydrofolylpolyglutamate synthase activity
GO:0005739; mitochondrion" ; gene "SPAC227.09" ; product "folylpolyglutamate synthase (predicted)" ;
chromosome1 GeneDB CDS 511807 513060 . + . mRNA SPAC227.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 513061 513325 . + . mRNA SPAC227.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.09" ; systematic_id "SPAC227.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 513820 513830 . + . mRNA SPAC227.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 513831 514345 . + . mRNA SPAC227.10 ; db_xref "SPD:05/05A09" ; systematic_id "SPAC227.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex" ; gene "SPAC227.10" ; product "prefoldin subunit 2 (predicted)" ;
chromosome1 GeneDB CDS 513831 513858 . + . mRNA SPAC227.10 ; colour "7" ;
chromosome1 GeneDB CDS 513908 513998 . + . mRNA SPAC227.10 ; colour "7" ;
chromosome1 GeneDB CDS 514046 514169 . + . mRNA SPAC227.10 ; colour "7" ;
chromosome1 GeneDB CDS 514244 514345 . + . mRNA SPAC227.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 513859 513864 . + . misc_feature unknown_315 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 513894 513907 . + . misc_feature unknown_316 ; colour "6" ; note "ttgaccagttccag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 513999 514004 . + . misc_feature unknown_317 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 514034 514045 . + . misc_feature unknown_318 ; colour "6" ; note "ctaactaaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 514170 514175 . + . misc_feature unknown_319 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 514228 514243 . + . misc_feature unknown_320 ; colour "6" ; note "ctaatcaaaatattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 514346 514921 . + . mRNA SPAC227.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.10" ; systematic_id "SPAC227.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 514552 515659 . - . mRNA SPAC227.11c ; db_xref "SPD:22/22B09" ; systematic_id "SPAC227.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR057W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; db_xref=PMID:12077121; qualifier=predicted; date=20090213 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0030433; ER-associated protein catabolism
GO:0005529; sugar binding
GO:0001948; glycoprotein binding" ; gene "SPAC227.11c" ; product "sensor for misfolded ER glycoproteins Yos9 (predicted)" ;
chromosome1 GeneDB CDS 514552 515082 . - . mRNA SPAC227.11c ; colour "7" ;
chromosome1 GeneDB CDS 515222 515482 . - . mRNA SPAC227.11c ; colour "7" ;
chromosome1 GeneDB CDS 515534 515659 . - . mRNA SPAC227.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 515083 515098 . - . misc_feature unknown_321 ; colour "6" ; note "ctaatcattgtattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 515216 515221 . - . misc_feature unknown_322 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 515483 515502 . - . misc_feature unknown_323 ; colour "6" ; note "ctaacggacttcctttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 515528 515533 . - . misc_feature unknown_324 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 515797 517247 . + . mRNA SPAC227.12 ; db_xref "SPD:23/23D05" ; systematic_id "SPAC227.12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; gene "SPAC227.12" ; product "U4/U6 x U5 tri-snRNP complex subunit Prp4 family (predicted)" ;
chromosome1 GeneDB CDS 515797 515833 . + . mRNA SPAC227.12 ; colour "7" ;
chromosome1 GeneDB CDS 515896 517247 . + . mRNA SPAC227.12 ; colour "7" ;
chromosome1 GeneDB misc_feature 515834 515839 . + . misc_feature unknown_325 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 515879 515895 . + . misc_feature unknown_326 ; colour "6" ; note "ctaataaaaaactttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 517248 517397 . + . mRNA SPAC227.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.12" ; systematic_id "SPAC227.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 517507 517864 . - . mRNA SPAC227.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.13c" ; systematic_id "SPAC227.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 517865 518443 . - . mRNA SPAC227.13c ; systematic_id "SPAC227.13c" ; colour "2" ; gene "isu1 ||| SPAC227.13c" ; Alias "isu1" ; db_xref "SPD:50/50A08" ; GO "GO:0005759; mitochondrial matrix
GO:0006879; iron ion homeostasis
GO:0016226; iron-sulfur cluster assembly
GO:0051537; 2 iron, 2 sulfur cluster binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR226C and YPL135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "isu1" ; product "mitochondrial iron-sulfur cluster assembly scaffold protein Isu1" ;
chromosome1 GeneDB CDS 517865 518443 . - . mRNA SPAC227.13c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 518442 518936 . - . mRNA SPAC227.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 520915 520932 . + . mRNA SPAC227.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 520933 521721 . + . mRNA SPAC227.14 ; systematic_id "SPAC227.14" ; colour "7" ; gene "SPAC227.14" ; note "uridine kinase PRINTS false positive" ; db_xref "SPD:09/09H04" ; GO "GO:0050262; ribosiylnicotinamide kinase activity
GO:0046495; nicotinamide riboside metabolism
GO:0005737; cytoplasm
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL129W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "nicotinamide riboside kinase (predicted)" ;
chromosome1 GeneDB CDS 520933 521133 . + . mRNA SPAC227.14 ; colour "7" ;
chromosome1 GeneDB CDS 521215 521721 . + . mRNA SPAC227.14 ; colour "7" ;
chromosome1 GeneDB misc_feature 521134 521139 . + . misc_feature unknown_327 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 521199 521214 . + . misc_feature unknown_328 ; colour "6" ; note "ctaacattttttaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 521722 522676 . + . mRNA SPAC227.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.14" ; systematic_id "SPAC227.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 523062 523245 . + . mRNA SPAC227.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 523246 525867 . + . mRNA SPAC227.15 ; db_xref "SPD:38/38F09" ; systematic_id "SPAC227.15" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR028C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0008599; protein phosphatase type 1 regulator activity
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0006109; regulation of carbohydrate metabolism
GO:0005737; cytoplasm
GO:0000164; protein phosphatase type 1 complex" ; gene "SPAC227.15" ; product "protein phosphatase regulatory subunit Reg1 (predicted)" ;
chromosome1 GeneDB CDS 523246 525867 . + . mRNA SPAC227.15 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 525868 526361 . + . mRNA SPAC227.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.15" ; systematic_id "SPAC227.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snoRNA 526726 526803 . + . snoRNA SPSNORNA.02 ; Alias "snoZ8" ; db_xref "EMBL:AJ251852" ; systematic_id "SPSNORNA.02" ; primary_name "snoZ8" ; gene "snoZ8 ||| Z8 ||| SPSNORNA.02" ; product "small nucleolar RNA Z8" ; note "guide for 2'-O-ribose methylation of rRNA" ;
chromosome1 GeneDB snoRNA 526937 527036 . + . snoRNA SPSNORNA.03 ; Alias "snoZ7" ; db_xref "EMBL:AJ251853" ; systematic_id "SPSNORNA.03" ; primary_name "snoZ7" ; gene "Z7 ||| snoZ7 ||| SPSNORNA.03" ; product "small nucleolar RNA Z7" ; note "guide for 2'-O-ribose methylation of rRNA" ;
chromosome1 GeneDB snoRNA 527191 527275 . + . snoRNA SPSNORNA.04 ; Alias "snoZ5" ; db_xref "EMBL:AJ251854" ; systematic_id "SPSNORNA.04" ; primary_name "snoZ5" ; gene "Z5 snoRNA ||| Z5 ||| snoZ5 ||| SPSNORNA.04" ; product "small nucleolar RNA Z5" ; note "guide for 2'-O-ribose methylation of rRNA" ;
chromosome1 GeneDB snoRNA 527387 527474 . + . snoRNA SPSNORNA.05 ; Alias "snoZ4" ; db_xref "EMBL:AJ251855" ; systematic_id "SPSNORNA.05" ; primary_name "snoZ4" ; gene "Z4 snoRNA ||| Z4 ||| snoZ4 ||| SPSNORNA.05" ; product "small nucleolar RNA Z4" ; note "guide for 2'-O-ribose methylation of rRNA" ;
chromosome1 GeneDB snoRNA 527624 527713 . + . snoRNA SPSNORNA.06 ; Alias "snoZ3" ; db_xref "EMBL:AJ251856" ; systematic_id "SPSNORNA.06" ; primary_name "snoZ3" ; gene "Z3 snoRNA ||| Z3 ||| snoZ3 ||| SPSNORNA.06" ; product "small nucleolar RNA Z3" ; note "guide for 2'-O-ribose methylation of rRNA" ;
chromosome1 GeneDB CDS_parts 528003 528771 . - . mRNA SPAC227.16c ; systematic_id "SPAC227.16c" ; colour "2" ; db_xref "SPD:09/09E07" ; Alias "psf3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL146W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006270; DNA replication initiation
GO:0000811; GINS complex
GO:0006271; DNA strand elongation during DNA replication
GO:0071165; GINS complex assembly
GO:0071163; DNA replication preinitiation complex assembly
GO:0031261; DNA replication preinitiation complex
GO:0005634; nucleus
GO:0006270; DNA replication initiation
GO:0043596; nuclear replication fork" ; primary_name "psf3" ; product "GINS complex subunit Psf3" ;
chromosome1 GeneDB CDS 528003 528064 . - . mRNA SPAC227.16c ; colour "2" ;
chromosome1 GeneDB CDS 528124 528269 . - . mRNA SPAC227.16c ; colour "2" ;
chromosome1 GeneDB CDS 528326 528460 . - . mRNA SPAC227.16c ; colour "2" ;
chromosome1 GeneDB CDS 528567 528625 . - . mRNA SPAC227.16c ; colour "2" ;
chromosome1 GeneDB CDS 528673 528771 . - . mRNA SPAC227.16c ; colour "2" ;
chromosome1 GeneDB misc_feature 528065 528089 . - . misc_feature unknown_329 ; colour "6" ; note "ctaacaaaagctcgtgctgccacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 528118 528123 . - . misc_feature unknown_330 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 528270 528283 . - . misc_feature unknown_331 ; colour "6" ; note "ctaactcattgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 528320 528325 . - . misc_feature unknown_332 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 528461 528472 . - . misc_feature unknown_333 ; colour "6" ; note "cttactttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 528561 528566 . - . misc_feature unknown_334 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 528626 528646 . - . misc_feature unknown_335 ; colour "6" ; note "ttgactttctaaacagtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 528667 528672 . - . misc_feature unknown_336 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 528770 528837 . - . mRNA SPAC227.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 529275 529800 . - . mRNA SPAC227.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.17c" ; systematic_id "SPAC227.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 529801 530166 . - . mRNA SPAC227.17c ; db_xref "SPD:02/02E06" ; systematic_id "SPAC227.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR512C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAC227.17c" ; product "conserved protein" ;
chromosome1 GeneDB CDS 529801 530166 . - . mRNA SPAC227.17c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 530322 530521 . + . mRNA SPAC227.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC227.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 530522 531628 . + . mRNA SPAC227.18 ; systematic_id "SPAC227.18" ; colour "2" ; gene "lys3 ||| SPAC227.18 ||| SPAC2F7.01" ; Alias "lys3" ; db_xref "SPD:17/17D06" ; synonym "SPAC2F7.01" ; GO "GO:0019878; lysine biosynthesis via aminoadipic acid
GO:0004754; saccharopine dehydrogenase (NAD+, L- lysine-forming) activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for lysine; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=orthologous to S. cerevisiae YIR034C; date=19700101 ||| term=experimental tools, selectable marker; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lys3" ; product "saccharopine dehydrogenase Lys3" ; EC_number "1.5.1.7" ;
chromosome1 GeneDB CDS 530522 531628 . + . mRNA SPAC227.18 ; colour "2" ;
chromosome1 GeneDB misc_feature 531479 532217 . + . misc_feature unknown_337 ; note "nominal overlap with cosmid SPAC227 and cosmid SPAC2F7" ;
chromosome1 GeneDB 3'-UTR 531629 531807 . + . mRNA SPAC227.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC227.18" ; systematic_id "SPAC227.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 531752 532431 . - . mRNA SPAC2F7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F7.02c" ; systematic_id "SPAC2F7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 532432 533409 . - . mRNA SPAC2F7.02c ; db_xref "SPD:14/14A05" ; systematic_id "SPAC2F7.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL010C and YLR019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0004721; phosphoprotein phosphatase activity
GO:0033554; cellular response to stress
GO:0006470; protein amino acid dephosphorylation" ; gene "SPAC2F7.02c" ; product "NLI interacting factor family phosphatase (predicted)" ;
chromosome1 GeneDB CDS 532432 533409 . - . mRNA SPAC2F7.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 533408 533677 . - . mRNA SPAC2F7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 534226 534461 . - . mRNA SPAC2F7.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F7.03c" ; systematic_id "SPAC2F7.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 534462 537725 . - . mRNA SPAC2F7.03c ; systematic_id "SPAC2F7.03c" ; colour "2" ; db_xref "SPD:30/30C08" ; Alias "pom1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9573052; date=19700101 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19474789; date=20090826 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19474792; date=20090826 ||| term=DYRK subfamily; date=19700101 ||| term=gene expression, expression cell cycle regulated; db_xref=PMID:11230130; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=localization, polar gradient; db_xref=PMID:19474789|PMID:19474792; date=20090826 ||| term=localization, inhibits Cdr2 localization at non-growing cell end; db_xref=PMID:19474792; date=20090826 ||| term=localization target Cdr2; db_xref=PMID:19474789; date=20090826 ||| term=localization target Cdr2; db_xref=PMID:19474792; date=20090826 ||| term=target is Cdr2; evidence=IDA; qualifier=phosphorylates|inhibits; db_xref=PMID:19474792; date=20090826 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0051285; cell cortex of cell tip
GO:0032153; cell division site
GO:0030427; site of polarized growth
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0070650; actin filament bundle distribution
GO:0000753; cellular morphogenesis during conjugation with cellular fusion
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0071343; negative regulation of establishment of contractile ring localization involved in cytokinesis during the cell cycle
GO:0006468; protein amino acid phosphorylation
GO:0071574; protein localization to medial cortex
GO:0008361; regulation of cell size
GO:0071775; regulation of cell cycle cytokinesis
GO:0032878; regulation of establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0007165; signal transduction" ; primary_name "pom1" ; product "DYRK family protein kinase Pom1" ; EC_number "2.7.12.1" ;
chromosome1 GeneDB CDS 534462 537725 . - . mRNA SPAC2F7.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 537724 537856 . - . mRNA SPAC2F7.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F7.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 537910 538394 . + . mRNA SPAC2F7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 538395 539847 . + . mRNA SPAC2F7.04 ; systematic_id "SPAC2F7.04" ; colour "2" ; gene "pmc2 ||| SPAC2F7.04 ||| med1" ; Alias "pmc2" ; db_xref "SPD:23/23D07" ; synonym "med1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR070W; date=20080620 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter" ; primary_name "pmc2" ; product "mediator complex subunit Pmc2/Med1" ;
chromosome1 GeneDB CDS 538395 538628 . + . mRNA SPAC2F7.04 ; colour "2" ;
chromosome1 GeneDB CDS 538675 539322 . + . mRNA SPAC2F7.04 ; colour "2" ;
chromosome1 GeneDB CDS 539365 539847 . + . mRNA SPAC2F7.04 ; colour "2" ;
chromosome1 GeneDB misc_feature 538629 538634 . + . misc_feature unknown_338 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 538658 538674 . + . misc_feature unknown_339 ; colour "2" ; note "splice branch and acceptor sequence, tactaattagtatct ag" ;
chromosome1 GeneDB misc_feature 539323 539328 . + . misc_feature unknown_340 ; colour "2" ; note "splice donor sequence,gtaagt" ;
chromosome1 GeneDB misc_feature 539348 539364 . + . misc_feature unknown_341 ; colour "2" ; note "splice branch and acceptor sequence, ttaactaatttcacc ag" ;
chromosome1 GeneDB 3'-UTR 539919 540124 . - . mRNA SPAC2F7.05c ; ID "SPAC2F7.05c" ; db_xref "SPD:18/18H06" ; systematic_id "SPAC2F7.05c" ; gene "SPAC2F7.05c" ; note "mRNA from AU012082" ;
chromosome1 GeneDB CDS_parts 540125 541312 . - . mRNA SPAC2F7.05c ; db_xref "SPD:18/18H06" ; systematic_id "SPAC2F7.05c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0005096; GTPase activator activity
GO:0003743; translation initiation factor activity
GO:0042256; mature ribosome assembly
GO:0006413; translational initiation" ; gene "SPAC2F7.05c" ; product "translation initiation factor eIF5 (predicted)" ;
chromosome1 GeneDB CDS 540125 541312 . - . mRNA SPAC2F7.05c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 541311 541617 . - . mRNA SPAC2F7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 541789 543557 . - . misc_feature SPAC2F7.06c ; Alias "pol4" ; colour "6" ; primary_name "pol4" ; gene "pol4 ||| SPAC2F7.06c" ; product "DNA polymerase X family; BRCT domain; similar to S. cerevisiae YCR014C" ;
chromosome1 GeneDB misc_RNA 541795 543483 . + . misc_RNA SPNCRNA.552 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.552" ; synonym "SPNG2AF10" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB CDS_parts 542037 543557 . - . mRNA SPAC2F7.06c ; systematic_id "SPAC2F7.06c" ; colour "2" ; gene "pol4 ||| SPAC2F7.06c" ; note "A template-instructed polymerase with preference for purines which combines properties of mammalian DNA polymerase beta, mu and lambda (PMID 16120966)" ; Alias "pol4" ; db_xref "SPD:24/24F07" ; GO "GO:0005634; nucleus
GO:0006287; base-excision repair, gap-filling
GO:0008408; 3'-5' exonuclease activity
GO:0003887; DNA-directed DNA polymerase activity
GO:0051575; 5'-deoxyribose-5-phosphate lyase activity
GO:0003899; DNA-directed RNA polymerase activity
GO:0007533; mating type switching
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0000166; nucleotide binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; cv=protein_family; date=20061127 ||| term=orthologous to S. cerevisiae YCR014C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "pol4" ; product "DNA polymerase X family" ; EC_number "2.7.7.7 ||| 2.7.7.6" ;
chromosome1 GeneDB CDS 542037 543557 . - . mRNA SPAC2F7.06c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 544127 544416 . - . mRNA SPAC2F7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F7.07c" ; systematic_id "SPAC2F7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 544417 546240 . - . mRNA SPAC2F7.07c ; systematic_id "SPAC2F7.07c" ; colour "2" ; gene "SPAC2F7.07c ||| cph2 ||| rco1" ; Alias "cph2" ; db_xref "SPD:45/45H11" ; synonym "rco1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YMR075W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016575; histone deacetylation
GO:0006338; chromatin remodeling
GO:0032221; Clr6 histone deacetylase complex II'
GO:0032221; Clr6 histone deacetylase complex II'
GO:0019787; small conjugating protein ligase activity" ; primary_name "cph2" ; product "Clr6 histone deacetylase associated PHD protein- 2 Cph2" ;
chromosome1 GeneDB CDS 544417 546240 . - . mRNA SPAC2F7.07c ; colour "2" ;
chromosome1 GeneDB CDS_parts 546664 548562 . - . mRNA SPAC2F7.08c ; systematic_id "SPAC2F7.08c" ; colour "2" ; gene "SPAC2F7.08c ||| snf5" ; Alias "snf5" ; db_xref "SPD:26/26E11" ; GO "GO:0016514; SWI/SNF complex
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin
GO:0010811; positive regulation of cell substrate adhesion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, sensitive to cold; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to 2-DOG; db_xref=PMID:18622392; qualifier=deletion; cv=phenotype; date=20080729 ||| term=phenotype, adhesion defects, cell-substrate adhesion, abolished; qualifier=deletion; db_xref=PMID:19542312; date=20090706 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706 ||| term=orthologous to S. cerevisiae YBR289W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=human SMARCB1 ortholog; date=20100218 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110 ||| term=gene expression, transcriptionally represses genes involved in glucose uptake; db_xref=PMID:18622392; cv=gene_ex; date=20080729 ||| term=gene expression, transcriptionally represses genes involved in iron uptake; db_xref=PMID:18622392; cv=gene_ex; date=20080729" ; primary_name "snf5" ; product "SWI/SNF complex subunit Snf5" ;
chromosome1 GeneDB CDS 546664 548562 . - . mRNA SPAC2F7.08c ; colour "2" ;
chromosome1 GeneDB CDS_parts 548768 550243 . - . mRNA SPAC2F7.09c ; db_xref "SPD:23/23G10" ; systematic_id "SPAC2F7.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR205C; date=20081110 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618 ||| term=species distribution, conserved in Vertebrates; date=20090618 ||| term=species distribution, conserved in Metazoa; date=20090618 ||| term=species distribution, conserved in Eukaryotes only; date=20090618 ||| term=human c4orf14 ortholog; date=20100821 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0005739; mitochondrion" ; colour "10" ; product "mitochondrial GTPase related protein (prediected)" ;
chromosome1 GeneDB CDS 548768 550243 . - . mRNA SPAC2F7.09c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 550242 550726 . - . mRNA SPAC2F7.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F7.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 550782 551010 . + . mRNA SPAC2F7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 551011 552939 . + . mRNA SPAC2F7.10 ; db_xref "SPD:26/26H01" ; systematic_id "SPAC2F7.10" ; colour "7" ; GO "GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0016192; vesicle-mediated transport
GO:0018345; protein palmitoylation" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-DHHC type; date=19700101 ||| term=orthologous to S. cerevisiae YDR264C and YOR034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC2F7.10" ; product "palmitoyltransferase (predicted)" ; EC_number "2.3.1.-" ;
chromosome1 GeneDB CDS 551011 552939 . + . mRNA SPAC2F7.10 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 552940 553530 . + . mRNA SPAC2F7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F7.10" ; systematic_id "SPAC2F7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 555290 556630 . + . mRNA SPAC2F7.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F7.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 555300 556109 . + . misc_RNA SPNCRNA.154 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.154" ; synonym "SPNG103" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 60 amino acids ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 556631 558220 . + . mRNA SPAC2F7.11 ; systematic_id "SPAC2F7.11" ; colour "2" ; gene "nrd1 ||| msa2 ||| SPAC2F7.11" ; Alias "nrd1" ; db_xref "SPD:25/25F01" ; synonym "msa2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15277777; date=19700101 ||| term=orthologous to S. cerevisiae YPL184C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Ste11; qualifier=mRNA; db_xref=PMID:9671458; date=20100823" ; GO "GO:0003723; RNA binding
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0005515; protein binding" ; primary_name "nrd1" ; product "RNA-binding protein Nrd1" ;
chromosome1 GeneDB CDS 556631 558220 . + . mRNA SPAC2F7.11 ; colour "2" ;
chromosome1 GeneDB misc_feature 558438 558824 . + . misc_feature unknown_342 ; note "was SPAC2F7.12, len: 128, questionable orf, but now thought to be not coding" ;
chromosome1 GeneDB 3'-UTR 558909 559316 . - . mRNA SPAC2F7.13c ; ID "SPAC2F7.13c" ; db_xref "SPD:18/18H07" ; systematic_id "SPAC2F7.13c" ; gene "SPAC2F7.13c ||| wrs1" ; note "mRNA from AU010974" ;
chromosome1 GeneDB CDS_parts 559317 560504 . - . mRNA SPAC2F7.13c ; systematic_id "SPAC2F7.13c" ; colour "7" ; gene "SPAC2F7.13c ||| wrs1" ; Alias "wrs1" ; db_xref "KEGG:MAP00380; ||| KEGG:MAP00970; ||| SPD:18/18H07" ; GO "GO:0005737; cytoplasm
GO:0004830; tryptophan-tRNA ligase activity
GO:0006436; tryptophanyl-tRNA aminoacylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "wrs1" ; product "tryptophan-tRNA ligase Wrs1 (predicted)" ; EC_number "6.1.1.2" ;
chromosome1 GeneDB CDS 559317 560504 . - . mRNA SPAC2F7.13c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 560505 560549 . - . mRNA SPAC2F7.13c ; ID "SPAC2F7.13c" ; systematic_id "SPAC2F7.13c" ; gene "SPAC2F7.13c ||| wrs1" ; note "mRNA from AU013453" ;
chromosome1 GeneDB 3'-UTR 560824 560977 . - . mRNA SPAC2F7.14c ; ID "SPAC2F7.14c" ; db_xref "SPD:14/14D02" ; systematic_id "SPAC2F7.14c" ; gene "SPAC2F7.14c" ; note "mRNA from AU010312" ;
chromosome1 GeneDB CDS_parts 560978 561967 . - . mRNA SPAC2F7.14c ; db_xref "SPD:14/14D02" ; systematic_id "SPAC2F7.14c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0006364; 35S primary transcript processing
GO:0061013; nuclear-transcribed mRNA catabolism" ; gene "SPAC2F7.14c" ; product "exosome subunit Rrp4 (predicted)" ;
chromosome1 GeneDB CDS 560978 561967 . - . mRNA SPAC2F7.14c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 561966 562166 . - . mRNA SPAC2F7.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F7.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 563321 563628 . - . LTR unknown_343 ; note "Tf1-type LTR" ;
chromosome1 GeneDB 5'-UTR 563926 564169 . + . mRNA SPAC2F7.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F7.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 564170 565034 . + . mRNA SPAC2F7.15 ; systematic_id "SPAC2F7.15" ; colour "7" ; gene "SPAC2F7.15 ||| rsm24" ; Alias "rsm24" ; db_xref "SPD:11/11E11" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR175C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rsm24" ; product "mitochondrial ribosomal protein subunit S24 (predicted)" ;
chromosome1 GeneDB CDS 564170 564464 . + . mRNA SPAC2F7.15 ; colour "7" ;
chromosome1 GeneDB CDS 564553 565034 . + . mRNA SPAC2F7.15 ; colour "7" ;
chromosome1 GeneDB misc_feature 564465 564470 . + . misc_feature unknown_344 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 564540 564552 . + . misc_feature unknown_345 ; colour "2" ; note "splice branch and acceptor sequence, ctgacaattatag" ;
chromosome1 GeneDB 3'-UTR 565083 565167 . - . mRNA SPAC2F7.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F7.16c" ; systematic_id "SPAC2F7.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 565168 569277 . - . mRNA SPAC2F7.16c ; systematic_id "SPAC2F7.16c" ; colour "2" ; gene "SPAC2F7.16c" ; Alias "pld1" ; db_xref "SPD:30/30F07" ; GO "GO:0005628; prospore membrane
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0004630; phospholipase D activity
GO:0006887; exocytosis
GO:0046488; phosphatidylinositol metabolic process
GO:0031321; prospore formation
GO:0048015; phophoinositide-mediated signaling" ; controlled_curation "term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YKR031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=misc, regulated by oleic acid; db_xref=PMID:20579016; date=20101021" ; primary_name "pld1" ; product "phospholipase D, Pld1" ; EC_number "3.1.4.4" ;
chromosome1 GeneDB CDS 565168 569277 . - . mRNA SPAC2F7.16c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 569276 569426 . - . mRNA SPAC2F7.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F7.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 570141 570235 . + . mRNA SPAC2F7.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F7.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 570236 571805 . + . mRNA SPAC2F7.17 ; db_xref "SPD:25/25C12" ; systematic_id "SPAC2F7.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL143C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0003747; translation release factor activity
GO:0006415; translational termination
GO:0006412; protein biosynthesis
GO:0005739; mitochondrion" ; gene "SPAC2F7.17" ; product "mitochondrial peptide chain release factor (predicted)" ;
chromosome1 GeneDB CDS 570236 570406 . + . mRNA SPAC2F7.17 ; colour "7" ;
chromosome1 GeneDB CDS 570549 570647 . + . mRNA SPAC2F7.17 ; colour "7" ;
chromosome1 GeneDB CDS 570885 571805 . + . mRNA SPAC2F7.17 ; colour "7" ;
chromosome1 GeneDB misc_feature 570407 570412 . + . misc_feature unknown_346 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 570531 570548 . + . misc_feature unknown_347 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttatatcttt tag" ;
chromosome1 GeneDB misc_feature 570648 570653 . + . misc_feature unknown_348 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB misc_feature 570873 570884 . + . misc_feature unknown_349 ; colour "2" ; note "splice branch and acceptor sequence, ctaacaatttag" ;
chromosome1 GeneDB 3'-UTR 571806 571847 . + . mRNA SPAC2F7.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F7.17" ; systematic_id "SPAC2F7.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 571878 571993 . - . mRNA SPAC13A11.01c ; Alias "rga8" ; ID "SPAC13A11.01c" ; db_xref "EMBL:AY375444 ||| SPD:28/28E05" ; systematic_id "SPAC13A11.01c" ; gene "rga8 ||| SPAC2F7.18c ||| SPAC13A11.01c" ; primary_name "rga8" ;
chromosome1 GeneDB CDS_parts 571994 574371 . - . mRNA SPAC13A11.01c ; systematic_id "SPAC13A11.01c" ; colour "2" ; gene "rga8 ||| SPAC2F7.18c ||| SPAC13A11.01c" ; Alias "rga8" ; db_xref "SPD:28/28E05" ; synonym "SPAC2F7.18c" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:14506270; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL047W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Rho1; qualifier=predicted; db_xref=PMID:14506270; date=19700101 ||| term=target of Shk1; qualifier=phosphorylated_by; db_xref=PMID:14506270; date=20100826" ; GO "GO:0051285; cell cortex of cell tip
GO:0032153; cell division site
GO:0031097; medial ring
; protein binding
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0005100; Rho GTPase activator activity
GO:0032319; regulation of Rho GTPase activity" ; primary_name "rga8" ; product "Rho-type GTPase activating protein Rga8" ;
chromosome1 GeneDB CDS 571994 574224 . - . mRNA SPAC13A11.01c ; colour "2" ;
chromosome1 GeneDB CDS 574269 574371 . - . mRNA SPAC13A11.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 573885 573988 . + . misc_feature unknown_350 ; note "nominal overlap with cosmid SPAC2F7 and cosmid SPAC13A11" ;
chromosome1 GeneDB misc_feature 574225 574238 . - . misc_feature unknown_351 ; colour "6" ; note "ctaacaacgaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 574225 574268 . - . intron SPAC13A11.01c ; Alias "rga8" ; db_xref "SPD:28/28E05" ; systematic_id "SPAC13A11.01c" ; primary_name "rga8" ; gene "rga8 ||| SPAC2F7.18c ||| SPAC13A11.01c" ; note "confirmed by AY375444" ;
chromosome1 GeneDB misc_feature 574263 574268 . - . misc_feature unknown_352 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 574372 574394 . - . mRNA SPAC13A11.01c ; Alias "rga8" ; ID "SPAC13A11.01c" ; db_xref "EMBL:AY375444" ; systematic_id "SPAC13A11.01c" ; gene "rga8 ||| SPAC2F7.18c ||| SPAC13A11.01c" ; primary_name "rga8" ;
chromosome1 GeneDB 3'-UTR 574760 575134 . - . mRNA SPAC13A11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13A11.02c" ; systematic_id "SPAC13A11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 575135 576622 . - . mRNA SPAC13A11.02c ; systematic_id "SPAC13A11.02c" ; colour "7" ; gene "erg11 ||| SPAC13A11.02c" ; note "source of the name cyp51 unknown" ; Alias "erg11" ; db_xref "SPD:24/24A02" ; obsolete_name "cyp51" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cholesterinosis; date=20060920 ||| term=gene expression, transcriptionally regulated by Sre1; db_xref=PMID:15797383; cv=gene_ex; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0008398 ; sterol 14-demethylase activity
GO:0006696; ergosterol biosynthesis
GO:0005789; endoplasmic reticulum membrane
GO:0005515; protein binding" ; primary_name "erg11" ; product "sterol 14-demethylase (predicted)" ; EC_number "1.14.13.70" ; reserved_name "erg11" ;
chromosome1 GeneDB CDS 575135 576622 . - . mRNA SPAC13A11.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 576621 577181 . - . mRNA SPAC13A11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13A11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 577199 578150 . + . misc_RNA SPNCRNA.155 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.155" ; synonym "SPNG105" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; cv=warning; date=20071008 ||| term=warning, signal could be generated by overlap of UTRs; cv=warning; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 578445 578520 . + . mRNA SPAC13A11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13A11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 578521 579247 . + . mRNA SPAC13A11.03 ; systematic_id "SPAC13A11.03" ; colour "2" ; gene "mcp7 ||| mug32 ||| SPAC13A11.03" ; Alias "mcp7" ; db_xref "SPD:08/08F07" ; synonym "mug32" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL183C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=region; date=20070810 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20070810 ||| term=name description, Meiotically Upregulated Gene; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=19700101" ; GO "GO:0007129; synapsis
GO:0006302; double-strand break repair
GO:0000790; nuclear chromatin
GO:0007131; meiotic recombination
GO:0005515; protein binding
GO:0007131; meiotic recombination" ; primary_name "mcp7" ; product "meiosis specific coiled-coil protein Mcp7" ;
chromosome1 GeneDB CDS 578521 578586 . + . mRNA SPAC13A11.03 ; colour "2" ;
chromosome1 GeneDB CDS 578681 579247 . + . mRNA SPAC13A11.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 578587 578592 . + . misc_feature unknown_353 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 578659 578680 . + . misc_feature unknown_354 ; colour "6" ; note "ctaatctatgttttttttatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 579248 579658 . + . mRNA SPAC13A11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13A11.03" ; systematic_id "SPAC13A11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 579435 579719 . - . mRNA SPAC13A11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13A11.04c" ; systematic_id "SPAC13A11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 579720 581390 . - . mRNA SPAC13A11.04c ; systematic_id "SPAC13A11.04c" ; colour "2" ; gene "SPAC13A11.04c ||| ubp8" ; Alias "ubp8" ; db_xref "SPD:34/34H11" ; GO "GO:0005654; nucleoplasm
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0000124; SAGA complex
GO:0004221; ubiquitin thiolesterase activity
GO:0035616; histone H2B conserved C-terminal lysine deubiquitinatio
GO:0006338; chromatin remodeling
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0016573; histone acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-UBP type; date=19700101 ||| term=orthologous to S. cerevisiae YMR223W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human USP22 ortholog; date=20101001" ; primary_name "ubp8" ; product "SAGA complex ubiquitin C-terminal hydrolase Ubp8" ;
chromosome1 GeneDB CDS 579720 579789 . - . mRNA SPAC13A11.04c ; colour "2" ;
chromosome1 GeneDB CDS 579835 579899 . - . mRNA SPAC13A11.04c ; colour "2" ;
chromosome1 GeneDB CDS 579953 580250 . - . mRNA SPAC13A11.04c ; colour "2" ;
chromosome1 GeneDB CDS 580296 580983 . - . mRNA SPAC13A11.04c ; colour "2" ;
chromosome1 GeneDB CDS 581084 581216 . - . mRNA SPAC13A11.04c ; colour "2" ;
chromosome1 GeneDB CDS 581295 581390 . - . mRNA SPAC13A11.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 579790 579804 . - . misc_feature unknown_355 ; colour "6" ; note "ctaaccagattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 579829 579834 . - . misc_feature unknown_356 ; colour "6" ; note "gtaggc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 579900 579912 . - . misc_feature unknown_357 ; colour "6" ; note "ctaatttttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 579947 579952 . - . misc_feature unknown_358 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 580251 580269 . - . misc_feature unknown_359 ; colour "6" ; note "ttaacaaatattattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 580290 580295 . - . misc_feature unknown_360 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 580984 580994 . - . misc_feature unknown_361 ; colour "6" ; note "ctaattcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 581078 581083 . - . misc_feature unknown_362 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 581217 581236 . - . misc_feature unknown_363 ; colour "6" ; note "ttaacatttctttcatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 581289 581294 . - . misc_feature unknown_364 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 581389 581417 . - . mRNA SPAC13A11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13A11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 582295 582491 . + . mRNA SPAC13A11.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13A11.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 582492 584033 . + . mRNA SPAC13A11.05 ; db_xref "SPD:25/25A01" ; systematic_id "SPAC13A11.05" ; controlled_curation "term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0008233; peptidase activity" ; colour "10" ; gene "SPAC13A11.05" ; product "peptidase family M17" ;
chromosome1 GeneDB CDS 582492 584033 . + . mRNA SPAC13A11.05 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 584034 584276 . + . mRNA SPAC13A11.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13A11.05" ; systematic_id "SPAC13A11.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 585266 587631 . - . misc_RNA SPNCRNA.553 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.553" ; synonym "SPNG2AF2" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB CDS_parts 585597 587312 . + . mRNA SPAC13A11.06 ; systematic_id "SPAC13A11.06" ; colour "7" ; gene "SPAC13A11.06 ||| SPAC3H8.01" ; db_xref "SPD:35/35E10" ; synonym "SPAC3H8.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR087C and YLR134W and YLR044C and YDL080C; date=19700101 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004737; pyruvate decarboxylase activity
GO:0000949; aromatic amino acid family catabolic process to alcohol via Ehrlich pathway
GO:0019655; glucose catabolic process to ethanol
GO:0006090; pyruvate metabolic process" ; product "pyruvate decarboxylase (predicted)" ; EC_number "4.1.1.1" ;
chromosome1 GeneDB CDS 585597 587312 . + . mRNA SPAC13A11.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 585930 586052 . + . misc_feature unknown_365 ; note "nominal overlap with cosmid SPAC13A11 and cosmid SPAC3H8" ;
chromosome1 GeneDB 5'-UTR 588543 588924 . + . mRNA SPAC3H8.02 ; ID "SPAC3H8.02" ; systematic_id "SPAC3H8.02" ; gene "SPAC3H8.02" ; note "mRNA from spc08266" ;
chromosome1 GeneDB CDS_parts 588925 590259 . + . mRNA SPAC3H8.02 ; db_xref "SPD:20/20F07" ; systematic_id "SPAC3H8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR380W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0008526; phosphatidylinositol transporter activity
GO:0031505; cell wall organization and biogenesis
GO:0015914; phospholipid transport" ; gene "SPAC3H8.02" ; product "sec14 cytosolic factor family phosphatidylinositol transporter (predicted)" ;
chromosome1 GeneDB CDS 588925 590259 . + . mRNA SPAC3H8.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 590260 590600 . + . mRNA SPAC3H8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H8.02" ; systematic_id "SPAC3H8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 591040 591066 . + . mRNA SPAC3H8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 591067 591555 . + . mRNA SPAC3H8.03 ; systematic_id "SPAC3H8.03" ; colour "7" ; gene "SPAC3H8.03" ; Alias "img2" ; db_xref "SPD:04/04F01" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0000002; mitochondrial genome maintenance
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR071C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "img2" ; product "mitochondrial ribosomal protein subunit Img2 (predicted)" ;
chromosome1 GeneDB CDS 591067 591246 . + . mRNA SPAC3H8.03 ; colour "7" ;
chromosome1 GeneDB CDS 591418 591555 . + . mRNA SPAC3H8.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 591247 591252 . + . misc_feature unknown_366 ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 591397 591417 . + . misc_feature unknown_367 ; note "splice branch and acceptor sequence, ctaacaatattttat caatag" ;
chromosome1 GeneDB 5'-UTR 592250 592742 . + . mRNA SPAC3H8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 592743 593759 . + . mRNA SPAC3H8.04 ; db_xref "SPD:15/15B02" ; systematic_id "SPAC3H8.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human KAII539 ortholog; date=20100806" ; colour "7" ; GO "GO:0045132; meiotic chromosome segregation" ; gene "SPAC3H8.04" ; product "chromosome segregation protein (predicted)" ;
chromosome1 GeneDB CDS 592743 593759 . + . mRNA SPAC3H8.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 593760 593792 . + . mRNA SPAC3H8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H8.04" ; systematic_id "SPAC3H8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 593955 593976 . - . mRNA SPAC3H8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H8.05c" ; systematic_id "SPAC3H8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 593977 597277 . - . mRNA SPAC3H8.05c ; systematic_id "SPAC3H8.05c" ; colour "7" ; db_xref "SPD:48/48B10" ; Alias "mms1" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR164W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0000151; ubiquitin ligase complex
GO:0070651; nonfunctional rRNA decay
GO:0000725; recombinational repair
GO:0031297; replication fork processing" ; primary_name "mms1" ; product "E3 ubiquitin ligase complex subunit Mms1 (predicted)" ;
chromosome1 GeneDB CDS 593977 594731 . - . mRNA SPAC3H8.05c ; colour "7" ;
chromosome1 GeneDB CDS 594771 594859 . - . mRNA SPAC3H8.05c ; colour "7" ;
chromosome1 GeneDB CDS 594900 597277 . - . mRNA SPAC3H8.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 594732 594746 . - . misc_feature unknown_368 ; note "splice branch and acceptor sequence, ctaacgattatttag" ;
chromosome1 GeneDB misc_feature 594765 594770 . - . misc_feature unknown_369 ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 594860 594876 . - . misc_feature unknown_370 ; note "splice branch and acceptor sequence, tactaacaattacac ag" ;
chromosome1 GeneDB misc_feature 594894 594899 . - . misc_feature unknown_371 ; note "splice donor sequence, gtgagt" ;
chromosome1 GeneDB 5'-UTR 597276 597531 . - . mRNA SPAC3H8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 597723 598290 . + . misc_RNA SPNCRNA.156 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.156" ; synonym "SPNG106" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 598473 598915 . + . mRNA SPAC3H8.06 ; Alias "aur1" ; ID "SPAC3H8.06" ; systematic_id "SPAC3H8.06" ; primary_name "aur1" ; gene "aur1 ||| SPAC3H8.06" ; note "mRNA from AU008824" ;
chromosome1 GeneDB CDS_parts 598916 600184 . + . mRNA SPAC3H8.06 ; systematic_id "SPAC3H8.06" ; colour "2" ; gene "aur1 ||| SPAC3H8.06" ; Alias "aur1" ; db_xref "SPD:20/20C09" ; GO "GO:0030173; integral to Golgi membrane
GO:0045140; inositol phosphoceramide synthase activity
GO:0006674; inositol phosphorylceramide metabolism
GO:0030148; sphingolipid biosynthetic process
GO:0070916; inositol phosphoceramide synthase complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9472078; date=20090826 ||| term=phenotype, resistance to aureobasidin A; allele=aur1R; db_xref=PMID:9472078; cv=phenotype; date=20060601 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:9472078; cv=phenotype; date=20090826 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL004W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "aur1" ; product "inositol phosphorylceramide synthase Aur1 (predicted)" ;
chromosome1 GeneDB CDS 598916 600184 . + . mRNA SPAC3H8.06 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 600185 600721 . + . mRNA SPAC3H8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H8.06" ; systematic_id "SPAC3H8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 600826 600882 . - . mRNA SPAC3H8.07c ; ID "SPAC3H8.07c" ; db_xref "SPD:42/42D03" ; systematic_id "SPAC3H8.07c" ; gene "SPAC3H8.07c" ; note "mRNA from spc06182" ;
chromosome1 GeneDB CDS_parts 600883 601485 . - . mRNA SPAC3H8.07c ; systematic_id "SPAC3H8.07c" ; colour "7" ; gene "SPAC3H8.07c ||| pac10" ; Alias "pac10" ; db_xref "SPD:42/42D03" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex
GO:0000226; microtubule cytoskeleton organization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pac10" ; product "prefoldin subunit 3 Pac10 (predicted)" ;
chromosome1 GeneDB CDS 600883 601282 . - . mRNA SPAC3H8.07c ; colour "7" ;
chromosome1 GeneDB CDS 601327 601425 . - . mRNA SPAC3H8.07c ; colour "7" ;
chromosome1 GeneDB CDS 601475 601485 . - . mRNA SPAC3H8.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 601283 601300 . - . misc_feature unknown_372 ; note "splice branch and acceptor sequence, ttaatataatgtaat ttag" ;
chromosome1 GeneDB misc_feature 601321 601326 . - . misc_feature unknown_373 ; note "splice donor sequence, gtaagg" ;
chromosome1 GeneDB misc_feature 601426 601438 . - . misc_feature unknown_374 ; note "splice branch and acceptor sequence, ctaatatgaatag" ;
chromosome1 GeneDB misc_feature 601469 601474 . - . misc_feature unknown_375 ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB 3'-UTR 601848 602059 . - . mRNA SPAC3H8.08c ; ID "SPAC3H8.08c" ; db_xref "SPD:35/35C07" ; systematic_id "SPAC3H8.08c" ; gene "SPAC3H8.08c" ; note "mRNA from AU006804" ;
chromosome1 GeneDB CDS_parts 602060 603751 . - . mRNA SPAC3H8.08c ; db_xref "SPD:35/35C07" ; systematic_id "SPAC3H8.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPBC16G5.17; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC3H8.08c" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB CDS 602060 603751 . - . mRNA SPAC3H8.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 603750 603968 . - . mRNA SPAC3H8.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H8.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 604496 606849 . - . mRNA SPAC3H8.09c ; systematic_id "SPAC3H8.09c" ; colour "7" ; gene "nab3 ||| SPAC3H8.09c" ; Alias "nab3" ; db_xref "SPD:28/28E01" ; GO "GO:0008143; poly(A) binding
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0005634; nucleus
GO:0031123; RNA 3'-end processing
GO:0030847; transcription termination from Pol II promoter, RNA polymerase(A)-independent
GO:0035649; Nrd1 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YPL190C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "nab3" ; product "poly(A) binding protein Nab3 (predicted)" ; reserved_name "nab3" ;
chromosome1 GeneDB CDS 604496 604959 . - . mRNA SPAC3H8.09c ; colour "7" ;
chromosome1 GeneDB CDS 605015 605355 . - . mRNA SPAC3H8.09c ; colour "7" ;
chromosome1 GeneDB CDS 605438 606849 . - . mRNA SPAC3H8.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 604960 604977 . - . misc_feature unknown_376 ; note "splice branch and acceptor sequence, ctaactttgtcttta tag" ;
chromosome1 GeneDB misc_feature 605009 605014 . - . misc_feature unknown_377 ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB misc_feature 605356 605369 . - . misc_feature unknown_378 ; note "splice branch and acceptor sequence, ctaacgtaatacag" ;
chromosome1 GeneDB misc_feature 605432 605437 . - . misc_feature unknown_379 ; note "splice donor sequence, gtaagg" ;
chromosome1 GeneDB 5'-UTR 608972 608991 . + . mRNA SPAC3H8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 608992 610159 . + . mRNA SPAC3H8.10 ; systematic_id "SPAC3H8.10" ; colour "2" ; gene "spo20 ||| sec14 ||| SPAC3H8.10" ; Alias "spo20" ; db_xref "SPD:18/18E01" ; synonym "sec14" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11294895; date=19700101 ||| term=orthologous to S. cerevisiae YMR079W and YKL091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; GO "GO:0032153; cell division site
GO:0051286; cell tip
GO:0005829; cytosol
GO:0005634; nucleus
GO:0005628; prospore membrane
GO:0008525; phosphatidylcholine transporter activity
GO:0006893; Golgi to plasma membrane transport
GO:0033205; cell cycle cytokinesis
GO:0015914; phospholipid transport
GO:0031321; prospore formation
GO:0030437; sporulation (sensu Fungi)
GO:0008526; phosphatidylinositol transporter activity
GO:0010570; regulation of filamentous growth" ; primary_name "spo20" ; product "sec14 cytosolic factor family Sec14" ;
chromosome1 GeneDB CDS 608992 609150 . + . mRNA SPAC3H8.10 ; colour "2" ;
chromosome1 GeneDB CDS 609199 609501 . + . mRNA SPAC3H8.10 ; colour "2" ;
chromosome1 GeneDB CDS 609698 609820 . + . mRNA SPAC3H8.10 ; colour "2" ;
chromosome1 GeneDB CDS 609884 610159 . + . mRNA SPAC3H8.10 ; colour "2" ;
chromosome1 GeneDB misc_feature 609151 609156 . + . misc_feature unknown_380 ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB intron 609151 609198 . + . intron SPAC3H8.10 ; Alias "spo20" ; db_xref "SPD:18/18E01" ; systematic_id "SPAC3H8.10" ; primary_name "spo20" ; gene "spo20 ||| sec14 ||| SPAC3H8.10" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 609182 609198 . + . misc_feature unknown_381 ; note "splice branch and acceptor sequence, tactaatggattctt ag" ;
chromosome1 GeneDB misc_feature 609502 609507 . + . misc_feature unknown_382 ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 609684 609697 . + . misc_feature unknown_383 ; note "splice branch and acceptor sequence, ttaaccgtcttcag" ;
chromosome1 GeneDB misc_feature 609821 609826 . + . misc_feature unknown_384 ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 609870 609883 . + . misc_feature unknown_385 ; note "splice branch and acceptor sequence, ttaacacgttaaag" ;
chromosome1 GeneDB 3'-UTR 610160 610703 . + . mRNA SPAC3H8.10 ; Alias "spo20" ; ID "SPAC3H8.10" ; db_xref "SPD:18/18E01" ; systematic_id "SPAC3H8.10" ; primary_name "spo20" ; gene "spo20 ||| sec14 ||| SPAC3H8.10" ; note "mRNA from AU013004" ;
chromosome1 GeneDB CDS_parts 610886 613277 . + . mRNA SPAC1F3.01 ; systematic_id "SPAC1F3.01" ; colour "7" ; gene "SPAC1F3.01 ||| SPAC3H8.11 ||| rrp6" ; Alias "rrp6" ; db_xref "SPD:28/28E09" ; synonym "SPAC3H8.11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000176; nuclear exosome (RNase complex)
GO:0006364; 35S primary transcript processing
GO:0000175; 3'-5'-exoribonuclease activity
GO:0061013; nuclear-transcribed mRNA catabolism" ; primary_name "rrp6" ; product "exosome subunit Rrp6 (predicted)" ;
chromosome1 GeneDB CDS 610886 611152 . + . mRNA SPAC1F3.01 ; colour "7" ;
chromosome1 GeneDB CDS 611211 613277 . + . mRNA SPAC1F3.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 611205 611258 . + . misc_feature unknown_386 ; note "nominal overlap with cosmid SPAC3H8 and cosmid SPAC1F3" ;
chromosome1 GeneDB 3'-UTR 613480 613497 . - . mRNA SPAC1F3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F3.02c" ; systematic_id "SPAC1F3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 613498 616848 . - . mRNA SPAC1F3.02c ; systematic_id "SPAC1F3.02c" ; colour "2" ; gene "mkh1 ||| SPAC1F3.02c" ; Alias "mkh1" ; db_xref "SPD:30/30D07" ; GO "GO:0000165; MAPKKK cascade
GO:0031505; cell wall organization and biogenesis
GO:0004709; MAP kinase kinase kinase activity
GO:0006970; response to osmotic stress
GO:0034605; cellular response to heat
GO:0005515; protein binding
GO:0005524; ATP binding
GO:0006468; protein amino acid phosphorylation
GO:0008360; regulation of cell shape
GO:0006883; sodium ion homeostasis
GO:0033205; cell cycle cytokinesis
GO:0005737; cytoplasm
GO:0030428; cell septum
GO:0030968; unfolded protein response
GO:0050850; positive regulation of calcium- mediated signaling
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9199286; date=19700101 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:9199286; date=20100712 ||| term=phenotype, cell morphology, round cells; qualifier=deletion; db_xref=PMID:9199286; date=20100712 ||| term=pathway, Mkh1-Pek1-Spm1 MAP kinase; cv=pathway; db_xref=PMID:10365961; date=19700101 ||| term=orthologous to S. cerevisiae YJL095W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Shk2; qualifier=phosphorylated_by; db_xref=PMID:11453249; date=20100826" ; primary_name "mkh1" ; product "MEK kinase (MEKK) Mkh1" ;
chromosome1 GeneDB CDS 613498 616848 . - . mRNA SPAC1F3.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 616847 617221 . - . mRNA SPAC1F3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 617366 617715 . + . LTR unknown_387 ; note "Tf1-type LTR" ;
chromosome1 GeneDB 5'-UTR 617825 617843 . + . mRNA SPAC1F3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 617844 620996 . + . mRNA SPAC1F3.03 ; db_xref "SPD:47/47H08" ; systematic_id "SPAC1F3.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR032W and YBL106C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006887; exocytosis
GO:0006893; Golgi to plasma membrane transport
GO:0005886; plasma membrane
GO:0005829; cytosol
GO:0030010; establishment of cell polarity (sensu Fungi)
GO:0000149; SNARE binding
GO:0007264; small GTPase mediated signal transduction
GO:0017137; Rab GTPase binding" ; gene "SPAC1F3.03" ; product "Lgl family protein (predicted)" ;
chromosome1 GeneDB CDS 617844 617945 . + . mRNA SPAC1F3.03 ; colour "7" ;
chromosome1 GeneDB CDS 617993 618422 . + . mRNA SPAC1F3.03 ; colour "7" ;
chromosome1 GeneDB CDS 618471 620376 . + . mRNA SPAC1F3.03 ; colour "7" ;
chromosome1 GeneDB CDS 620420 620996 . + . mRNA SPAC1F3.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 617946 617951 . + . misc_feature unknown_388 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 617976 617992 . + . misc_feature unknown_389 ; colour "2" ; note "splice branch and acceptor sequence, ttaataacaaagatt ag" ;
chromosome1 GeneDB misc_feature 618423 618428 . + . misc_feature unknown_390 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB misc_feature 618460 618470 . + . misc_feature unknown_391 ; colour "2" ; note "splice branch and acceptor sequence, ctaattttcag" ;
chromosome1 GeneDB misc_feature 620377 620382 . + . misc_feature unknown_392 ; colour "2" ; note "splice donor sequence, gtaagg" ;
chromosome1 GeneDB misc_feature 620404 620419 . + . misc_feature unknown_393 ; colour "2" ; note "splice branch and acceptor sequence, ctaactattccatta g" ;
chromosome1 GeneDB CDS_parts 621189 622191 . - . mRNA SPAC1F3.04c ; systematic_id "SPAC1F3.04c" ; colour "7" ; gene "SPAC1F3.04c" ; db_xref "SPD:14/14G04" ; Alias "tsr3" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0046872; metal ion binding
GO:0030490; maturation of SSU-rRNA" ; controlled_curation "term=orthologous to S. cerevisiae YOR006C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "tsr3" ; product "SSU-rRNA maturation protein Tsr3 (predicted)" ; reserved_name "tsr3" ;
chromosome1 GeneDB CDS 621189 621852 . - . mRNA SPAC1F3.04c ; colour "7" ;
chromosome1 GeneDB CDS 621989 622191 . - . mRNA SPAC1F3.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 621853 621864 . - . misc_feature unknown_394 ; colour "2" ; note "splice branch and acceptor sequence, ttaacgctgcag" ;
chromosome1 GeneDB misc_feature 621983 621988 . - . misc_feature unknown_395 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 622190 622280 . - . mRNA SPAC1F3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 623160 623271 . + . mRNA SPAC1F3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 623272 625086 . + . mRNA SPAC1F3.05 ; db_xref "SPD:36/36F04" ; systematic_id "SPAC1F3.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=GAT domain; qualifier=inferred from context; date=19700101 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YHR108W and YDR358W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005802; Golgi trans face
GO:0006896; Golgi to vacuole transport
GO:0006886; intracellular protein transport" ; gene "SPAC1F3.05" ; product "Golgi localized Arf binding gamma-adaptin ortholog (predicted)" ;
chromosome1 GeneDB CDS 623272 623305 . + . mRNA SPAC1F3.05 ; colour "7" ;
chromosome1 GeneDB CDS 623375 623462 . + . mRNA SPAC1F3.05 ; colour "7" ;
chromosome1 GeneDB CDS 623518 623593 . + . mRNA SPAC1F3.05 ; colour "7" ;
chromosome1 GeneDB CDS 623752 625086 . + . mRNA SPAC1F3.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 623306 623311 . + . misc_feature unknown_396 ; colour "2" ; note "splice donor sequence, gtgagt" ;
chromosome1 GeneDB misc_feature 623360 623374 . + . misc_feature unknown_397 ; colour "2" ; note "splice branch and acceptor sequence, ctgacaagtaattag" ;
chromosome1 GeneDB misc_feature 623463 623468 . + . misc_feature unknown_398 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB misc_feature 623504 623517 . + . misc_feature unknown_399 ; colour "2" ; note "splice branch and acceptor sequence, ctgactttttcgcag" ;
chromosome1 GeneDB misc_feature 623594 623599 . + . misc_feature unknown_400 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 623734 623751 . + . misc_feature unknown_401 ; colour "2" ; note "splice branch and acceptor sequence, ttaacataagtgctt tag" ;
chromosome1 GeneDB 3'-UTR 625087 625251 . + . mRNA SPAC1F3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F3.05" ; systematic_id "SPAC1F3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 625415 625429 . - . mRNA SPAC1F3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F3.06c" ; systematic_id "SPAC1F3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 625430 631303 . - . mRNA SPAC1F3.06c ; systematic_id "SPAC1F3.06c" ; colour "2" ; gene "spo15 ||| SPAC1F3.06c" ; note "possible ortholog of S. cerevisiae SPO21" ; Alias "spo15" ; db_xref "SPD:48/48H10" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0031322; prospore-specific spindle pole body modification
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030437; ascospore formation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "spo15" ; product "sporulation protein Spo15" ;
chromosome1 GeneDB CDS 625430 631303 . - . mRNA SPAC1F3.06c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 631523 631555 . - . mRNA SPAC1F3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F3.07c" ; systematic_id "SPAC1F3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 631556 632841 . - . mRNA SPAC1F3.07c ; systematic_id "SPAC1F3.07c" ; colour "2" ; gene "rsc58 ||| SPAC1F3.07c" ; Alias "rsc58" ; db_xref "SPD:22/22C09" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016586; RSC complex
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, chromosome segregation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to Brefeldin A; db_xref=PMID:18622392; qualifier=deletion; cv=phenotype; date=20080717 ||| term=phenotype, growth defect, slow growth; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=gene expression, transcriptionally regulates genes involved in vesicle mediated transport; db_xref=PMID:18622392; cv=gene_ex; date=20080717 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=bromodomain; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YLR033W; date=19700101" ; primary_name "rsc58" ; product "RSC complex subunit Rsc58" ;
chromosome1 GeneDB CDS 631556 632424 . - . mRNA SPAC1F3.07c ; colour "2" ;
chromosome1 GeneDB CDS 632499 632841 . - . mRNA SPAC1F3.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 632425 632438 . - . misc_feature unknown_402 ; colour "2" ; note "splice branch and acceptor sequence, ctaatttagtcaag" ;
chromosome1 GeneDB misc_feature 632493 632498 . - . misc_feature unknown_403 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 632840 633061 . - . mRNA SPAC1F3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 633148 633474 . - . mRNA SPAC1F3.08c ; db_xref "SPD:01/01G06" ; systematic_id "SPAC1F3.08c" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPAC1F3.08c" ; product "dubious" ;
chromosome1 GeneDB CDS 633148 633474 . - . mRNA SPAC1F3.08c ; colour "6" ;
chromosome1 GeneDB 5'-UTR 633652 634936 . + . mRNA SPAC1F3.09 ; ID "SPAC1F3.09" ; db_xref "PMID:18488015" ; systematic_id "SPAC1F3.09" ; gene "SPAC1F3.09 ||| mug161" ; note "From Solexa transcript SPNG112 ||| This UTR seems to be specific for the meiotic transcript" ;
chromosome1 GeneDB CDS_parts 634937 636959 . + . mRNA SPAC1F3.09 ; systematic_id "SPAC1F3.09" ; colour "7" ; gene "SPAC1F3.09 ||| mug161" ; Alias "mug161" ; db_xref "SPD:46/46C08" ; GO "GO:0005634; nucleus
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR093W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human CWF19L1 ortholog; date=20100226" ; primary_name "mug161" ; product "CwfJ family protein, splicing factor (predicted)" ;
chromosome1 GeneDB CDS 634937 634971 . + . mRNA SPAC1F3.09 ; colour "7" ;
chromosome1 GeneDB CDS 635069 635235 . + . mRNA SPAC1F3.09 ; colour "7" ;
chromosome1 GeneDB CDS 635349 636176 . + . mRNA SPAC1F3.09 ; colour "7" ;
chromosome1 GeneDB CDS 636234 636314 . + . mRNA SPAC1F3.09 ; colour "7" ;
chromosome1 GeneDB CDS 636385 636959 . + . mRNA SPAC1F3.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 634972 634977 . + . misc_feature unknown_404 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 635050 635068 . + . misc_feature unknown_405 ; colour "2" ; note "splice branch and acceptor sequence, ctaacatagattcga atag" ;
chromosome1 GeneDB misc_feature 635236 635241 . + . misc_feature unknown_406 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB misc_feature 635333 635348 . + . misc_feature unknown_407 ; colour "2" ; note "splice branch and acceptor sequence, ctaacctgagctgta g" ;
chromosome1 GeneDB misc_feature 636177 636182 . + . misc_feature unknown_408 ; colour "2" ; note "splice donor sequence, gtgagt" ;
chromosome1 GeneDB misc_feature 636217 636233 . + . misc_feature unknown_409 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttcttttctc ag" ;
chromosome1 GeneDB misc_feature 636315 636320 . + . misc_feature unknown_410 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB misc_feature 636373 636384 . + . misc_feature unknown_411 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgactcag" ;
chromosome1 GeneDB CDS_parts 637023 639311 . - . mRNA SPAC1F3.10c ; systematic_id "SPAC1F3.10c" ; colour "7" ; gene "SPAC1F3.10c ||| oct1" ; Alias "oct1" ; db_xref "SPD:28/28C03" ; GO "GO:0005759; mitochondrial matrix
GO:0004222; metalloendopeptidase activity
GO:0006879; iron ion homeostasis
GO:0006627; mitochondrial protein processing
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL134C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "oct1" ; product "mitochondrial intermediate peptidase Oct1 (predicted)" ; EC_number "3.4.24.59" ;
chromosome1 GeneDB CDS 637023 639311 . - . mRNA SPAC1F3.10c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 639310 639330 . - . mRNA SPAC1F3.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F3.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 639312 639498 . + . misc_feature unknown_412 ; note "nominal overlap with cosmid SPAC1D4 and cosmid SPAC1F3" ;
chromosome1 GeneDB CDS_parts 639318 640175 . + . mRNA SPAC1D4.01 ; systematic_id "SPAC1D4.01" ; colour "10" ; gene "SPAC1D4.01 ||| SPAC1F3.11" ; db_xref "SPD:11/11D04" ; synonym "SPAC1F3.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20100714 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100714 ||| term=species distribution, conserved in Metazoa; date=20100714 ||| term=species distribution, conserved in Vertebrates; date=20100714 ||| term=human c9Orf78 ortholog; date=20100714 ||| term=species distribution, conserved in Eukaryotes; date=20100714 ||| term=species distribution, conserved in Eukaryotes only; date=20100714 ||| term=species distribution, conserved in Fungi; date=20100714 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100714" ; GO "GO:0005634; nucleus" ; product "human c9orf78 ortholog" ;
chromosome1 GeneDB CDS 639318 640175 . + . mRNA SPAC1D4.01 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 640377 640398 . - . mRNA SPAC1D4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1D4.02c" ; systematic_id "SPAC1D4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 640399 641627 . - . mRNA SPAC1D4.02c ; db_xref "SPD:19/19E09" ; systematic_id "SPAC1D4.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PDZ domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDR517W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human GORASP1 and GORASP2 ortholog; date=20100707" ; colour "7" ; GO "GO:0007030; Golgi organization
GO:0005794; Golgi apparatus
GO:0005737; cytoplasm
GO:0006888; ER to Golgi vesicle-mediated transport" ; gene "SPAC1D4.02c" ; product "human GRASP protein family Golgi protein (predicted)" ;
chromosome1 GeneDB CDS 640399 640947 . - . mRNA SPAC1D4.02c ; colour "7" ;
chromosome1 GeneDB CDS 640997 641184 . - . mRNA SPAC1D4.02c ; colour "7" ;
chromosome1 GeneDB CDS 641281 641401 . - . mRNA SPAC1D4.02c ; colour "7" ;
chromosome1 GeneDB CDS 641448 641627 . - . mRNA SPAC1D4.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 640948 640962 . - . misc_feature unknown_413 ; colour "2" ; note "splice branch and acceptor sequence, ctaacaatttaacag" ;
chromosome1 GeneDB misc_feature 640991 640996 . - . misc_feature unknown_414 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 641185 641197 . - . misc_feature unknown_415 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgactacag" ;
chromosome1 GeneDB misc_feature 641275 641280 . - . misc_feature unknown_416 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 641402 641419 . - . misc_feature unknown_417 ; colour "6" ; note "ctaaagtgtttttcacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 641442 641447 . - . misc_feature unknown_418 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 641626 641641 . - . mRNA SPAC1D4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1D4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 641885 643512 . - . mRNA SPAC1D4.03c ; systematic_id "SPAC1D4.03c" ; colour "7" ; gene "aut12 ||| SPAC1D4.03c" ; Alias "aut12" ; db_xref "SPD:45/45D11" ; GO "GO:0000329; vacuolar membrane (sensu Fungi)
GO:0005829; cytosol
GO:0006623; protein targeting to vacuole
GO:0006914; autophagy" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "aut12" ; product "autophagy associated protein Aut12 (predicted)" ;
chromosome1 GeneDB CDS 641885 642131 . - . mRNA SPAC1D4.03c ; colour "7" ;
chromosome1 GeneDB CDS 642218 643512 . - . mRNA SPAC1D4.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 642132 642147 . - . misc_feature unknown_419 ; colour "2" ; note "splice branch and acceptor sequence, ctaactatgttttta g" ;
chromosome1 GeneDB misc_feature 642212 642217 . - . misc_feature unknown_420 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB 5'-UTR 644665 644710 . + . mRNA SPAC1D4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1D4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 644711 646377 . + . mRNA SPAC1D4.04 ; systematic_id "SPAC1D4.04" ; colour "2" ; gene "cct2 ||| SPAC1D4.04" ; Alias "cct2" ; db_xref "SPD:45/45E05" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL142W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cct2" ; product "chaperonin-containing T-complex beta subunit Cct2" ;
chromosome1 GeneDB CDS 644711 644713 . + . mRNA SPAC1D4.04 ; colour "2" ;
chromosome1 GeneDB CDS 644750 644881 . + . mRNA SPAC1D4.04 ; colour "2" ;
chromosome1 GeneDB CDS 644929 646377 . + . mRNA SPAC1D4.04 ; colour "2" ;
chromosome1 GeneDB misc_feature 644736 644749 . + . misc_feature unknown_421 ; colour "2" ; note "splice branch and acceptor sequence, tactaacgatatag" ;
chromosome1 GeneDB misc_feature 644882 644887 . + . misc_feature unknown_422 ; colour "2" ; note "splice donor sequence, gtaagg" ;
chromosome1 GeneDB misc_feature 644915 644928 . + . misc_feature unknown_423 ; colour "2" ; note "splice branch and acceptor sequence, ttaacgatttatag" ;
chromosome1 GeneDB 3'-UTR 646378 646427 . + . mRNA SPAC1D4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1D4.04" ; systematic_id "SPAC1D4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 646481 646592 . - . mRNA SPAC1D4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1D4.05c" ; systematic_id "SPAC1D4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 646593 647808 . - . mRNA SPAC1D4.05c ; db_xref "SPD:19/19C12" ; systematic_id "SPAC1D4.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EXS family protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR414C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal anchor; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006621; protein retention in ER
GO:0016020; membrane
GO:0006486; protein amino acid glycosylation" ; gene "SPAC1D4.05c" ; product "Erd1 homolog (predicted)" ;
chromosome1 GeneDB CDS 646593 647677 . - . mRNA SPAC1D4.05c ; colour "7" ;
chromosome1 GeneDB CDS 647730 647808 . - . mRNA SPAC1D4.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 647678 647700 . - . misc_feature unknown_424 ; colour "2" ; note "splice branch and acceptor sequence, tactaacaatctcta ttctttag" ;
chromosome1 GeneDB misc_feature 647724 647729 . - . misc_feature unknown_425 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB 5'-UTR 647807 648075 . - . mRNA SPAC1D4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1D4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 648301 649393 . - . mRNA SPAC1D4.06c ; systematic_id "SPAC1D4.06c" ; colour "2" ; gene "csk1 ||| SPAC1D4.06c" ; Alias "csk1" ; db_xref "SPD:17/17B06" ; GO "; cyclin-dependent protein kinase activating kinase activity
GO:0019912; cyclin-dependent protein kinase activating kinase activity
GO:0005524; ATP binding
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0007346; regulation of mitotic cell cycle
GO:0007165; signal transduction
GO:0045903; positive regulation of translational fidelity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL139W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8467814; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Cdc2; db_xref=PMID:10226032; date=20100823" ; primary_name "csk1" ; product "cyclin-dependent kinase activating kinase Csk1" ; EC_number "2.7.1.-" ;
chromosome1 GeneDB CDS 648301 648501 . - . mRNA SPAC1D4.06c ; colour "2" ;
chromosome1 GeneDB CDS 648614 648829 . - . mRNA SPAC1D4.06c ; colour "2" ;
chromosome1 GeneDB CDS 648890 649393 . - . mRNA SPAC1D4.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 648502 648516 . - . misc_feature unknown_426 ; colour "2" ; note "splice branch and acceptor sequence, ctaactgtttttaag" ;
chromosome1 GeneDB misc_feature 648608 648613 . - . misc_feature unknown_427 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 648830 648845 . - . misc_feature unknown_428 ; colour "2" ; note "splice donor sequence, ctaacgttttttttag" ;
chromosome1 GeneDB misc_feature 648884 648889 . - . misc_feature unknown_429 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB CDS_parts 649449 649889 . - . mRNA SPAC1D4.07c ; db_xref "SPD:03/03G07" ; systematic_id "SPAC1D4.07c" ; colour "6" ; gene "SPAC1D4.07c" ; product "dubious" ;
chromosome1 GeneDB CDS 649449 649889 . - . mRNA SPAC1D4.07c ; colour "6" ;
chromosome1 GeneDB 5'-UTR 650465 650813 . + . mRNA SPAC1D4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1D4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 650814 651848 . + . mRNA SPAC1D4.08 ; systematic_id "SPAC1D4.08" ; colour "7" ; gene "pis1 ||| SPAC1D4.08" ; Alias "pis1" ; db_xref "SPD:15/15F08" ; GO "GO:0003881; CDP-diacylglycerol-inositol 3- phosphatidyltransferase activity
GO:0006661; phosphatidylinositol biosynthesis
GO:0005783; endoplasmic reticulum
GO:0005741; mitochondrial outer membrane
GO:0005789; endoplasmic reticulum membrane
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR113W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pis1" ; product "CDP-diacylglycerol--inositol 3- phosphatidyltransferase Pis1 (predicted)" ; EC_number "2.7.8.11" ;
chromosome1 GeneDB CDS 650814 650893 . + . mRNA SPAC1D4.08 ; colour "7" ;
chromosome1 GeneDB CDS 651173 651848 . + . mRNA SPAC1D4.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 650894 650899 . + . misc_feature unknown_430 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 651849 652224 . + . mRNA SPAC1D4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1D4.08" ; systematic_id "SPAC1D4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 652225 652358 . - . mRNA SPAC1D4.09c ; ID "SPAC1D4.09c" ; db_xref "SPD:11/11H02" ; systematic_id "SPAC1D4.09c" ; gene "SPAC1D4.09c ||| rtf2" ; note "mRNA from AU009260" ;
chromosome1 GeneDB CDS_parts 652359 653234 . - . mRNA SPAC1D4.09c ; systematic_id "SPAC1D4.09c" ; colour "2" ; gene "SPAC1D4.09c ||| rtf2" ; db_xref "SPD:11/11H02" ; Alias "rtf2" ; GO "GO:0005634; nucleus
GO:0006274; replication termination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rtf2" ; product "replication termination factor Rtf2" ;
chromosome1 GeneDB CDS 652359 652529 . - . mRNA SPAC1D4.09c ; colour "2" ;
chromosome1 GeneDB CDS 652576 652698 . - . mRNA SPAC1D4.09c ; colour "2" ;
chromosome1 GeneDB CDS 652763 653178 . - . mRNA SPAC1D4.09c ; colour "2" ;
chromosome1 GeneDB CDS 653222 653234 . - . mRNA SPAC1D4.09c ; colour "2" ;
chromosome1 GeneDB intron 652530 652575 . - . intron SPAC1D4.09c ; db_xref "SPD:11/11H02" ; systematic_id "SPAC1D4.09c" ; gene "SPAC1D4.09c ||| rtf2" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 652699 652713 . - . misc_feature unknown_431 ; colour "6" ; note "ctaacacaacatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 652757 652762 . - . misc_feature unknown_432 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 653179 653192 . - . misc_feature unknown_433 ; colour "6" ; note "ttaacatgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 653216 653221 . - . misc_feature unknown_434 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 653233 653246 . - . mRNA SPAC1D4.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1D4.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 653520 653773 . + . mRNA SPAC1D4.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1D4.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 653774 656240 . + . mRNA SPAC1D4.10 ; systematic_id "SPAC1D4.10" ; colour "2" ; db_xref "SPD:28/28H01" ; Alias "trz1" ; synonym "sptrz1" ; GO "GO:0005634; nucleus
; 3'-tRNA processing endoribonuclease activity
GO:0042779; tRNA 3'-trailer cleavage" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR079C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20090628 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:19555350; date=20090628 ||| term=complementation, functionally complemented by S. cerevisiae YKR079C; db_xref=PMID:19555350; date=20100923 ||| term=protein sequence feature, NLS; db_xref=PMID:21208191; residue=208-211; evidence=IMP; date=20110110" ; primary_name "trz1" ; product "3'-tRNA processing endonuclease tRNAse Z L2 Trz1 (predicted)" ; EC_number "3.1.26.11" ;
chromosome1 GeneDB CDS 653774 654158 . + . mRNA SPAC1D4.10 ; colour "2" ;
chromosome1 GeneDB CDS 654196 656240 . + . mRNA SPAC1D4.10 ; colour "2" ;
chromosome1 GeneDB misc_feature 654159 654164 . + . misc_feature unknown_435 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 654176 654195 . + . misc_feature unknown_436 ; colour "2" ; note "splice branch and acceptor sequence, ttaataatttctgac aatag" ;
chromosome1 GeneDB 3'-UTR 656241 656602 . + . mRNA SPAC1D4.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1D4.10" ; systematic_id "SPAC1D4.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 656326 656759 . - . mRNA SPAC1D4.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1D4.11c" ; systematic_id "SPAC1D4.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 656760 658832 . - . mRNA SPAC1D4.11c ; systematic_id "SPAC1D4.11c" ; colour "2" ; db_xref "SPD:27/27G02" ; Alias "lkh1" ; synonym "kic1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11741326; date=19700101 ||| term=CLK/STY/LAMMEr subfamily; db_xref=PMID:12565823; date=19700101 ||| term=target is Atf1; qualifier=indirect; db_xref=PMID:14623292; date=19700101 ||| term=orthologous to S. cerevisiae YLL019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:12565823; date=20100712 ||| term=warning, gene structure updated; db_xref=PMID:12565823; date=20061204" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0023034; intracellular signaling cascade
GO:0060258; negative regulation of filamentous growth
GO:0060257; negative regulation of flocculation
GO:0006468; protein amino acid phosphorylation
GO:0032955; regulation of barrier septum formation
GO:0010590; regulation of cell separation during cytokinesis
GO:0060237; regulation of fungal-type cell wall organization and biogenesis
GO:0034599; cellular response to oxidative stress
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "lkh1" ; product "dual specificity protein kinase Lkh1" ; EC_number "2.7.11.1 ||| 2.7.10.1" ;
chromosome1 GeneDB CDS 656760 658832 . - . mRNA SPAC1D4.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 658831 660177 . - . mRNA SPAC1D4.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1D4.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 658833 664781 . - . misc_feature unknown_437 ; note "low complexity gene-free region" ;
chromosome1 GeneDB misc_RNA 663144 663352 . - . misc_RNA SPNCRNA.79 ; systematic_id "SPNCRNA.79" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412 ||| term=genome organization, low complexity gene free region; qualifier=predicted; cv=genome_org; date=20050412" ; gene "SPNCRNA.79" ; product "non-coding RNA (predicted)" ; note "cDNA EST, but cannot predict corresponding gene here ||| possibly spurious, expression low on both strands (pers comm. Jurg Bahler)" ;
chromosome1 GeneDB 5'-UTR 664356 664781 . + . mRNA SPAC1D4.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1D4.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 664782 667100 . + . mRNA SPAC1D4.12 ; systematic_id "SPAC1D4.12" ; colour "2" ; gene "rad15 ||| rhp3 ||| SPAC1D4.12" ; Alias "rad15" ; db_xref "SPD:38/38C06" ; synonym "rhp3" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0000112; nucleotide-excision repair factor 3 complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000717; nucleotide-excision repair, DNA duplex unwinding
GO:0043141; ATP-dependent 5' to 3' DNA helicase activity
GO:0005524; ATP binding
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:1534406; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YER171W; date=19700101 ||| term=human ERCC2 ortholog; date=20080602 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rad15" ; product "transcription factor TFIIH complex subunit Rad15" ; EC_number "3.6.1.-" ;
chromosome1 GeneDB CDS 664782 667100 . + . mRNA SPAC1D4.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 667101 667381 . + . mRNA SPAC1D4.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1D4.12" ; systematic_id "SPAC1D4.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 667875 668152 . + . mRNA SPAC1D4.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1D4.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 668153 669175 . + . mRNA SPAC1D4.13 ; systematic_id "SPAC1D4.13" ; colour "2" ; gene "byr1 ||| ste1 ||| ste3 ||| SPAC1D4.13" ; Alias "byr1" ; db_xref "SPD:15/15C10" ; synonym "ste1 ||| ste3" ; GO "GO:0032005; signal transduction during conjugation with cellular fusion
GO:0000751; cell cycle arrest in response to pheromone
GO:0004708; MAP kinase kinase activity
GO:0006995; cellular response to nitrogen starvation
GO:0005515; protein binding
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=phenotype, sterile; db_xref=PMID:3185514; date=20101013 ||| term=name description, STErile; db_xref=PMID:3185514; date=20101013" ; primary_name "byr1" ; product "MAP kinase kinase Byr1" ; EC_number "2.7.1.-" ;
chromosome1 GeneDB CDS 668153 669175 . + . mRNA SPAC1D4.13 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 669176 669636 . + . mRNA SPAC1D4.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1D4.13" ; systematic_id "SPAC1D4.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 669786 670131 . - . LTR unknown_438 ; note "tf2 type LTR" ;
chromosome1 GeneDB 5'-UTR 670242 670378 . + . mRNA SPAC1D4.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1D4.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 670379 675320 . + . mRNA SPAC1D4.14 ; systematic_id "SPAC1D4.14" ; colour "7" ; gene "SPAC22F3.14c ||| SPAC1D4.14 ||| tho2" ; Alias "tho2" ; db_xref "SPD:48/48G10" ; synonym "SPAC22F3.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000347; THO complex
GO:0003676; nucleic acid binding
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006406; mRNA export from nucleus" ; primary_name "tho2" ; product "THO complex subunit Tho2 (predicted)" ;
chromosome1 GeneDB CDS 670379 670427 . + . mRNA SPAC1D4.14 ; colour "7" ;
chromosome1 GeneDB CDS 670483 675320 . + . mRNA SPAC1D4.14 ; colour "7" ;
chromosome1 GeneDB misc_feature 670400 670512 . + . misc_feature unknown_439 ; note "nominal overlap with cosmid c1D4" ;
chromosome1 GeneDB misc_feature 670400 670512 . - . misc_feature unknown_440 ; note "nominal overlap with cosmid SPAC22F3, EM:Z54285 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 670428 670433 . + . misc_feature unknown_441 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB misc_feature 670463 670482 . + . misc_feature unknown_442 ; colour "2" ; note "splice branch and acceptor sequence, ttaacagaatataattttag" ;
chromosome1 GeneDB 3'-UTR 675321 675357 . + . mRNA SPAC1D4.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1D4.14" ; systematic_id "SPAC1D4.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 675466 675538 . - . mRNA SPAC22F3.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F3.13" ; systematic_id "SPAC22F3.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 675539 678238 . - . mRNA SPAC22F3.13 ; systematic_id "SPAC22F3.13" ; colour "2" ; gene "tsc1 ||| SPAC22F3.13" ; Alias "tsc1" ; db_xref "SPD:39/39A02" ; GO "GO:0033596; TSC1-TSC2 complex
GO:0005096; GTPase activator activity
GO:0005515; protein binding
GO:0043091; L-arginine import
GO:0031929; TOR signaling pathway
GO:0006995; cellular response to nitrogen starvation
GO:0033157; regulation of intracellular protein transport
GO:0000747; conjugation woth cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, conjugation defects; db_xref=PMID:12136010; cv=phenotype; date=20100204 ||| term=human TSC1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=disease associated, tumor suppressor syndrome, tuberous sclereosis; date=19700101 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "tsc1" ; product "hamartin" ;
chromosome1 GeneDB CDS 675539 678238 . - . mRNA SPAC22F3.13 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 678237 678271 . - . mRNA SPAC22F3.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F3.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 678585 679442 . + . misc_RNA SPNCRNA.158 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.158" ; synonym "SPNG118-19" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 679812 680175 . + . mRNA SPAC22F3.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F3.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 680176 681621 . + . mRNA SPAC22F3.12c ; systematic_id "SPAC22F3.12c" ; colour "2" ; gene "rgs1 ||| SPAC22F3.12c" ; Alias "rgs1" ; db_xref "SPD:23/23C06" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005096; GTPase activator activity
GO:0010969; regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion
GO:0090029; negative regulation of pheromone signalling during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR452C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=target of Ste11; db_xref=PMID:11554925; date=20100630" ; primary_name "rgs1" ; product "regulator of G-protein signaling Rgs1" ;
chromosome1 GeneDB CDS 680176 681621 . + . mRNA SPAC22F3.12c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 681622 681890 . + . mRNA SPAC22F3.12c ; Alias "rgs1" ; ID "SPAC22F3.12c" ; db_xref "SPD:23/23C06" ; systematic_id "SPAC22F3.12c" ; primary_name "rgs1" ; gene "rgs1 ||| SPAC22F3.12c" ; note "mRNA from AU009111" ;
chromosome1 GeneDB misc_feature 682506 682818 . + . misc_feature unknown_443 ; note "possible additional exons for SPAC22F3.11c" ;
chromosome1 GeneDB 5'-UTR 682835 682873 . + . mRNA SPAC22F3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 682874 683446 . + . mRNA SPAC22F3.11c ; systematic_id "SPAC22F3.11c" ; colour "7" ; gene "snu23 ||| SPAC22F3.11c" ; note "possibly missing N-terminal exons ||| PMID:16823372 predict a frameshift at base 124" ; Alias "snu23" ; db_xref "SPD:06/06A12" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20061213 ||| term=zf-C2H2 type; date=20061213 ||| term=orthologous to S. cerevisiae YDL098C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=warning, gene structure updated; db_xref=PMID:16823372; date=20090202" ; primary_name "snu23" ; product "U4/U6 x U5 tri-snRNP complex subunit Snu23 (predicted)" ;
chromosome1 GeneDB CDS 682874 682994 . + . mRNA SPAC22F3.11c ; colour "7" ;
chromosome1 GeneDB CDS 682996 683109 . + . mRNA SPAC22F3.11c ; colour "7" ;
chromosome1 GeneDB CDS 683160 683446 . + . mRNA SPAC22F3.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 683110 683115 . + . misc_feature unknown_444 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 683145 683159 . + . misc_feature unknown_445 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttattaacag" ;
chromosome1 GeneDB 3'-UTR 683447 683660 . + . mRNA SPAC22F3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F3.11c" ; systematic_id "SPAC22F3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 683990 684009 . + . mRNA SPAC22F3.10c ; Alias "gcs1" ; ID "SPAC22F3.10c" ; systematic_id "SPAC22F3.10c" ; primary_name "gcs1" ; gene "gcs1 ||| apd1 ||| SPAC22F3.10c" ; note "source, EMBL:AY214339" ;
chromosome1 GeneDB CDS_parts 684010 686270 . + . mRNA SPAC22F3.10c ; systematic_id "SPAC22F3.10c" ; colour "2" ; gene "gcs1 ||| apd1 ||| SPAC22F3.10c" ; Alias "gcs1" ; db_xref "KEGG:MAP00251; ||| KEGG:MAP00480; ||| SPD:28/28B03" ; synonym "apd1" ; GO "GO:0006750; glutathione biosynthesis
GO:0071276; cellular response to cadmium ion
GO:0004357; glutamate-cysteine ligase activity
GO:0017109; glutamate-cysteine ligase complex
GO:0046911; metal chelating activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL101C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "gcs1" ; product "glutamate-cysteine ligase Gcs1" ; EC_number "6.3.2.2" ;
chromosome1 GeneDB CDS 684010 684093 . + . mRNA SPAC22F3.10c ; colour "2" ;
chromosome1 GeneDB CDS 684345 686270 . + . mRNA SPAC22F3.10c ; colour "2" ;
chromosome1 GeneDB misc_feature 684094 684099 . + . misc_feature unknown_446 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB misc_feature 684327 684344 . + . misc_feature unknown_447 ; colour "2" ; note "splice branch and acceptor sequence, ctaactttttatctt tag" ;
chromosome1 GeneDB 3'-UTR 686271 686300 . + . mRNA SPAC22F3.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F3.10c" ; systematic_id "SPAC22F3.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 686576 686592 . + . mRNA SPAC22F3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 686593 688730 . + . mRNA SPAC22F3.09c ; systematic_id "SPAC22F3.09c" ; colour "2" ; gene "res2 ||| mcs1 ||| pct1 ||| SPAC22F3.09c" ; Alias "res2" ; db_xref "SPD:37/37E05" ; synonym "mcs1 ||| pct1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Mitotic Catastrophe Suppressor; db_xref=PMID:2474475; cv=name_description; date=19700101 ||| term=APSES domain; date=19700101 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; date=20100122" ; GO "GO:0030907; MBF transcription complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0045896; regulation of transcription, mitotic
GO:0051037; regulation of transcription, meiotic
GO:0005515; protein binding
GO:0000083; regulation of transcription involved in G1/S phase of mitotic cell cycle
GO:0010551; regulation of gene-specific transcription from RNA polymerase II promoter" ; primary_name "res2" ; product "MBF transcription factor complex subunit Res2" ;
chromosome1 GeneDB CDS 686593 686824 . + . mRNA SPAC22F3.09c ; colour "2" ;
chromosome1 GeneDB CDS 686989 688730 . + . mRNA SPAC22F3.09c ; colour "2" ;
chromosome1 GeneDB misc_feature 686825 686830 . + . misc_feature unknown_448 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB intron 686825 686988 . + . intron SPAC22F3.09c ; Alias "res2" ; db_xref "EMBL:Z32838 ||| SPD:37/37E05" ; systematic_id "SPAC22F3.09c" ; gene "res2 ||| mcs1 ||| pct1 ||| SPAC22F3.09c" ; primary_name "res2" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 686972 686988 . + . misc_feature unknown_449 ; colour "2" ; note "splice branch and acceptor sequence, tattaaccaaactat ag" ;
chromosome1 GeneDB 3'-UTR 688731 688825 . + . mRNA SPAC22F3.09c ; Alias "res2" ; ID "SPAC22F3.09c" ; db_xref "EMBL:Z32838 ||| SPD:37/37E05" ; systematic_id "SPAC22F3.09c" ; gene "res2 ||| mcs1 ||| pct1 ||| SPAC22F3.09c" ; primary_name "res2" ;
chromosome1 GeneDB 5'-UTR 689380 689482 . + . mRNA SPAC22F3.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F3.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 689483 690928 . + . mRNA SPAC22F3.08c ; systematic_id "SPAC22F3.08c" ; colour "7" ; gene "rok1 ||| SPAC22F3.08c" ; Alias "rok1" ; db_xref "SPD:23/23C07" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005730; nucleolus
GO:0006364; 35S primary transcript processing
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YGL171W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SLC45A3 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "rok1" ; product "ATP-dependent RNA helicase Rok1 (predicted)" ;
chromosome1 GeneDB CDS 689483 690928 . + . mRNA SPAC22F3.08c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 690929 691030 . + . mRNA SPAC22F3.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F3.08c" ; systematic_id "SPAC22F3.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 691472 691529 . + . mRNA SPAC22F3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 691530 691984 . + . mRNA SPAC22F3.07c ; systematic_id "SPAC22F3.07c" ; colour "7" ; gene "atp20 ||| SPAC22F3.07c" ; Alias "atp20" ; db_xref "SPD:04/04A07" ; GO "GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0005198; structural molecule activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR020W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp20" ; product "F0-ATPase subunit G (predicted)" ;
chromosome1 GeneDB CDS 691530 691656 . + . mRNA SPAC22F3.07c ; colour "7" ;
chromosome1 GeneDB CDS 691706 691803 . + . mRNA SPAC22F3.07c ; colour "7" ;
chromosome1 GeneDB CDS 691853 691984 . + . mRNA SPAC22F3.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 691657 691662 . + . misc_feature unknown_450 ; colour "2" ; note "splice donor sequence, gtattt" ;
chromosome1 GeneDB misc_feature 691686 691705 . + . misc_feature unknown_451 ; colour "2" ; note "splice branch and acceptor sequence, aactaactttttcaa tttag" ;
chromosome1 GeneDB misc_feature 691804 691809 . + . misc_feature unknown_452 ; colour "2" ; note "splice donor sequence, gtaagc" ;
chromosome1 GeneDB misc_feature 691837 691852 . + . misc_feature unknown_453 ; colour "2" ; note "splice branch and acceptor sequence, ctaatttctcttttag" ;
chromosome1 GeneDB 3'-UTR 691985 692077 . + . mRNA SPAC22F3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F3.07c" ; systematic_id "SPAC22F3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 692567 693061 . + . mRNA SPAC22F3.15 ; db_xref "PMID:18488015" ; systematic_id "SPAC22F3.15" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=orthologous to S. cerevisiae YOR215C; date=20080102 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPAC22F3.15" ; product "GatB/YqeY domain protein" ;
chromosome1 GeneDB CDS 692567 692725 . + . mRNA SPAC22F3.15 ; colour "10" ;
chromosome1 GeneDB CDS 692849 693061 . + . mRNA SPAC22F3.15 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 693780 693830 . + . mRNA SPAC22F3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 693831 697034 . + . mRNA SPAC22F3.06c ; systematic_id "SPAC22F3.06c" ; colour "7" ; gene "lon1 ||| SPAC22F3.06c" ; Alias "lon1" ; db_xref "SPD:48/48A06" ; GO "GO:0005759; mitochondrial matrix
GO:0004176; ATP-dependent peptidase activity
GO:0005524; ATP binding
GO:0006515; misfolded or incompletely synthesized protein catabolic process
GO:0004252; serine-type endopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=AAA family ATPase; date=20081222" ; primary_name "lon1" ; product "Lon protease homolog Lon1 (predicted)" ; EC_number "3.4.21.-" ;
chromosome1 GeneDB CDS 693831 697034 . + . mRNA SPAC22F3.06c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 697035 697082 . + . mRNA SPAC22F3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F3.06c" ; systematic_id "SPAC22F3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 697291 698068 . + . mRNA SPAC22F3.05c ; systematic_id "SPAC22F3.05c" ; colour "2" ; gene "alp41 ||| SPAC22F3.05c" ; Alias "alp41" ; db_xref "SPD:09/09F10" ; GO "GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0030952; establishment and/or maintenance of cytoskeleton polarity
GO:0031110; regulation of microtubule polymerization or depolymerization
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR138W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "alp41" ; product "ADP-ribosylation factor Alp41" ;
chromosome1 GeneDB CDS 697291 697355 . + . mRNA SPAC22F3.05c ; colour "2" ;
chromosome1 GeneDB CDS 697401 697455 . + . mRNA SPAC22F3.05c ; colour "2" ;
chromosome1 GeneDB CDS 697496 697568 . + . mRNA SPAC22F3.05c ; colour "2" ;
chromosome1 GeneDB CDS 697621 697766 . + . mRNA SPAC22F3.05c ; colour "2" ;
chromosome1 GeneDB CDS 697805 697885 . + . mRNA SPAC22F3.05c ; colour "2" ;
chromosome1 GeneDB CDS 697928 698068 . + . mRNA SPAC22F3.05c ; colour "2" ;
chromosome1 GeneDB misc_feature 697356 697361 . + . misc_feature unknown_454 ; colour "2" ; note "splice branch and acceptor sequence, gtaaga" ;
chromosome1 GeneDB misc_feature 697388 697400 . + . misc_feature unknown_455 ; colour "2" ; note "splice branch and acceptor sequence, ctaatgactttag" ;
chromosome1 GeneDB misc_feature 697456 697461 . + . misc_feature unknown_456 ; colour "2" ; note "splice branch and acceptor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 697477 697495 . + . misc_feature unknown_457 ; colour "2" ; note "splice branch and acceptor sequence, ataatttatcgattg atag" ;
chromosome1 GeneDB misc_feature 697569 697574 . + . misc_feature unknown_458 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB misc_feature 697609 697620 . + . misc_feature unknown_459 ; colour "2" ; note "splice branch and acceptor sequence, tactaattcaag" ;
chromosome1 GeneDB misc_feature 697767 697772 . + . misc_feature unknown_460 ; colour "2" ; note "splice donor sequence, gtaggc" ;
chromosome1 GeneDB misc_feature 697790 697804 . + . misc_feature unknown_461 ; colour "2" ; note "splice branch and acceptor sequence, ttaacatgcatatag" ;
chromosome1 GeneDB misc_feature 697886 697891 . + . misc_feature unknown_462 ; colour "2" ; note "splice donor sequence, gtcagt" ;
chromosome1 GeneDB misc_feature 697912 697927 . + . misc_feature unknown_463 ; colour "2" ; note "splice branch and acceptor sequence, ctaacaacaagtcaa g" ;
chromosome1 GeneDB CDS_parts 698033 702533 . - . mRNA SPAC22F3.04 ; systematic_id "SPAC22F3.04" ; colour "10" ; gene "SPAC22F3.04 ||| mug62" ; db_xref "SPD:30/30H07" ; Alias "mug62" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR093C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "mug62" ; product "AMP binding enzyme (predicted)" ;
chromosome1 GeneDB CDS 698033 698177 . - . mRNA SPAC22F3.04 ; colour "10" ;
chromosome1 GeneDB CDS 698223 698441 . - . mRNA SPAC22F3.04 ; colour "10" ;
chromosome1 GeneDB CDS 698480 698841 . - . mRNA SPAC22F3.04 ; colour "10" ;
chromosome1 GeneDB CDS 698884 699104 . - . mRNA SPAC22F3.04 ; colour "10" ;
chromosome1 GeneDB CDS 699148 699363 . - . mRNA SPAC22F3.04 ; colour "10" ;
chromosome1 GeneDB CDS 699410 702533 . - . mRNA SPAC22F3.04 ; colour "10" ;
chromosome1 GeneDB misc_feature 698178 698192 . - . misc_feature unknown_464 ; colour "2" ; note "splice branch and acceptor sequence, ataacaatattttag" ;
chromosome1 GeneDB misc_feature 698217 698222 . - . misc_feature unknown_465 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 698442 698453 . - . misc_feature unknown_466 ; colour "2" ; note "splice branch and acceptor sequence, ctaatgtcacag" ;
chromosome1 GeneDB misc_feature 698474 698479 . - . misc_feature unknown_467 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 698842 698856 . - . misc_feature unknown_468 ; colour "2" ; note "splice branch and acceptor sequence, tactaattaatatag" ;
chromosome1 GeneDB misc_feature 698878 698883 . - . misc_feature unknown_469 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB misc_feature 699105 699120 . - . misc_feature unknown_470 ; colour "2" ; note "splice branch and acceptor sequence, tactaac aagacct ag" ;
chromosome1 GeneDB misc_feature 699142 699147 . - . misc_feature unknown_471 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 699364 699379 . - . misc_feature unknown_472 ; colour "2" ; note "splice branch and accceptor sequence, ttaacgcatattatag" ;
chromosome1 GeneDB misc_feature 699404 699409 . - . misc_feature unknown_473 ; colour "2" ; note "splice donor sequence, gtaaat" ;
chromosome1 GeneDB tRNA 703075 703147 . - . tRNA SPATRNAVAL.02 ; systematic_id "SPATRNAVAL.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033410; TAC codon-amino acid adaptor activity" ; gene "SPATRNAVAL.02" ; product "tRNA Valine" ; note "tRNA Val anticodon TAC, Cove score 76.36" ;
chromosome1 GeneDB CDS_parts 703789 706828 . + . mRNA SPAC22F3.03c ; systematic_id "SPAC22F3.03c" ; colour "2" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "double mutant with rhp54 does not sporulate (PMID 14551247) ||| double mutant with rhp54 does not arrest meiotic progression (PMID 14551247)" ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; synonym "tid1 ||| mug34" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; db_xref=PMID:14551247; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14551247; date=19700101 ||| term=orthologous to S. cerevisiae YBR073W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:14551247; date=20090905" ; GO "GO:0000724; double-strand break repair via homologous recombination
GO:0007131; meiotic recombination
GO:0004003; ATP-dependent DNA helicase activity
GO:0005634; nucleus" ; primary_name "rdh54" ; product "ATP-dependent DNA helicase Rdh54" ;
chromosome1 GeneDB CDS 703789 703967 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 704015 704113 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 704205 704280 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 704322 704536 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 704573 704763 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 704816 704889 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 704925 705056 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 705095 705158 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 705195 705293 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 705333 705490 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 705529 705601 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 705637 706252 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 706292 706361 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 706404 706652 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB CDS 706688 706828 . + . mRNA SPAC22F3.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 703968 703973 . + . misc_feature unknown_474 ; colour "2" ; note "splice donor sequence, gtatgg" ;
chromosome1 GeneDB intron 703968 704014 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 703999 704014 . + . misc_feature unknown_475 ; colour "2" ; note "splice branch and acceptor sequence, tgactaaacgcgtca g" ;
chromosome1 GeneDB misc_feature 704114 704119 . + . misc_feature unknown_476 ; colour "2" ; note "splice donor sequence, gtattc" ;
chromosome1 GeneDB intron 704114 704204 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 704187 704204 . + . misc_feature unknown_477 ; colour "2" ; note "splice branch and acceptor sequence tattaatatatgttaa ag" ;
chromosome1 GeneDB misc_feature 704281 704286 . + . misc_feature unknown_478 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB intron 704281 704321 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 704308 704321 . + . misc_feature unknown_479 ; colour "2" ; note "splice branch and acceptor sequence, ctcatcatctttag" ;
chromosome1 GeneDB misc_feature 704537 704542 . + . misc_feature unknown_480 ; colour "2" ; note "splice donor sequence, gtatgg" ;
chromosome1 GeneDB intron 704537 704572 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 704561 704572 . + . misc_feature unknown_481 ; colour "2" ; note "splice branch and acceptor sequence ctaacattacag" ;
chromosome1 GeneDB misc_feature 704764 704769 . + . misc_feature unknown_482 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB intron 704764 704815 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 704799 704815 . + . misc_feature unknown_483 ; colour "2" ; note "splice branch and acceptor sequence, ctaatcttattattt ag" ;
chromosome1 GeneDB misc_feature 704890 704895 . + . misc_feature unknown_484 ; colour "2" ; note "splice donor sequence,gtaagt" ;
chromosome1 GeneDB intron 704890 704924 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "EMBL:AY293737 ||| SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA and pers. comm. Mike Catlett" ;
chromosome1 GeneDB misc_feature 704912 704924 . + . misc_feature unknown_485 ; colour "2" ; note "splice branch and acceptor sequence, tactaatggctag" ;
chromosome1 GeneDB misc_feature 705057 705062 . + . misc_feature unknown_486 ; colour "2" ; note "splice donor sequence,gtaatt" ;
chromosome1 GeneDB intron 705057 705094 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 705082 705094 . + . misc_feature unknown_487 ; colour "2" ; note "splice branch and acceptor sequence ctaattgctaaag" ;
chromosome1 GeneDB intron 705159 705194 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 705294 705299 . + . misc_feature unknown_488 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB intron 705294 705332 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 705321 705332 . + . misc_feature unknown_489 ; colour "2" ; note "splice branch and acceptor sequence ttaaccgctcag" ;
chromosome1 GeneDB misc_feature 705491 705496 . + . misc_feature unknown_490 ; colour "2" ; note "splice donor sequence, gtttgt" ;
chromosome1 GeneDB intron 705491 705528 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 705516 705528 . + . misc_feature unknown_491 ; colour "2" ; note "splice branch and acceptor sequence tactgatttttag" ;
chromosome1 GeneDB misc_feature 705602 705607 . + . misc_feature unknown_492 ; colour "2" ; note "splice donor sequence, gtatgc" ;
chromosome1 GeneDB intron 705602 705636 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 705623 705636 . + . misc_feature unknown_493 ; colour "2" ; note "splice branch and acceptor sequence tattaacataatag" ;
chromosome1 GeneDB misc_feature 706253 706258 . + . misc_feature unknown_494 ; colour "2" ; note "splice donor sequence, gtacga" ;
chromosome1 GeneDB intron 706253 706291 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 706272 706291 . + . misc_feature unknown_495 ; colour "2" ; note "splice branch and acceptor sequence, ataacatattaag" ;
chromosome1 GeneDB misc_feature 706362 706367 . + . misc_feature unknown_496 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB intron 706362 706403 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 706387 706403 . + . misc_feature unknown_497 ; colour "2" ; note "splice branch and acceptor sequence, tactgacttgattgt ag" ;
chromosome1 GeneDB misc_feature 706653 706658 . + . misc_feature unknown_498 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB intron 706653 706687 . + . intron SPAC22F3.03c ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; systematic_id "SPAC22F3.03c" ; primary_name "rdh54" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "confirmed by mRNA (EMBL:AY293737)" ;
chromosome1 GeneDB misc_feature 706671 706687 . + . misc_feature unknown_499 ; colour "2" ; note "splice branch and acceptor sequence, ctaatattaatggcc ag" ;
chromosome1 GeneDB CDS_parts 706844 707473 . - . mRNA SPAC22F3.02 ; systematic_id "SPAC22F3.02" ; colour "2" ; gene "atf31 ||| SPAC22F3.02" ; Alias "atf31" ; db_xref "SPD:42/42E08" ; GO "GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016563; transcriptional activator activity
GO:0040020; regulation of meiosis
GO:0010673; positive regulation of transcription from RNA polymerase II promoter, meiotic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bZIP (basic leucine zipper) transcription factor family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080721 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:12161753; date=20090110" ; primary_name "atf31" ; product "transcription factor Atf31" ;
chromosome1 GeneDB CDS 706844 707473 . - . mRNA SPAC22F3.02 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 707970 708054 . - . mRNA SPAC1296.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1296.01c" ; systematic_id "SPAC1296.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 708055 710023 . - . mRNA SPAC1296.01c ; systematic_id "SPAC1296.01c" ; colour "7" ; gene "SPAC22F3.01 ||| SPAC1296.01c" ; Alias "SPAC22F3.01" ; db_xref "SPD:27/27B08" ; synonym "SPAC22F3.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=human PGM3 ortholog; date=20101222" ; GO "GO:0004610; phosphoacetylglucosamine mutase activity
GO:0006048; UDP-N-acetylglucosamine biosynthesis
GO:0031501; mannosyltransferase complex" ; primary_name "SPAC22F3.01" ; product "phosphoacetylglucosamine mutase (predicted)" ; EC_number "5.4.2.3" ;
chromosome1 GeneDB CDS 708055 708127 . - . mRNA SPAC1296.01c ; colour "7" ;
chromosome1 GeneDB CDS 708168 708931 . - . mRNA SPAC1296.01c ; colour "7" ;
chromosome1 GeneDB CDS 708979 709339 . - . mRNA SPAC1296.01c ; colour "7" ;
chromosome1 GeneDB CDS 709428 709644 . - . mRNA SPAC1296.01c ; colour "7" ;
chromosome1 GeneDB CDS 709745 709830 . - . mRNA SPAC1296.01c ; colour "7" ;
chromosome1 GeneDB CDS 709896 710023 . - . mRNA SPAC1296.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 708128 708143 . - . misc_feature unknown_500 ; colour "2" ; note "splice branch and acceptor sequence ctaatttactag" ;
chromosome1 GeneDB misc_feature 708162 708167 . - . misc_feature unknown_501 ; colour "2" ; note "splice donor sequence,gtaagt" ;
chromosome1 GeneDB misc_feature 708932 708943 . - . misc_feature unknown_502 ; colour "2" ; note "splice branch and acceptor sequence ctaatttactag" ;
chromosome1 GeneDB misc_feature 708934 709047 . + . misc_feature unknown_503 ; note "nominal overlap with cosmid SPAC1296, EM:AL035439 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 708934 709047 . - . misc_feature unknown_504 ; note "nominal overlap with cosmid SPAC22F3, EM:Z54285 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 708973 708978 . - . misc_feature unknown_505 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 709340 709357 . - . misc_feature unknown_506 ; colour "6" ; note "ctaatacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 709422 709427 . - . misc_feature unknown_507 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 709645 709657 . - . misc_feature unknown_508 ; colour "6" ; note "ctaacaatcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 709739 709744 . - . misc_feature unknown_509 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 709831 709848 . - . misc_feature unknown_510 ; colour "6" ; note "ttaacattttatttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 709890 709895 . - . misc_feature unknown_511 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 710022 710228 . - . mRNA SPAC1296.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1296.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 711215 711300 . + . mRNA SPAC1296.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1296.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 711301 712150 . + . mRNA SPAC1296.02 ; systematic_id "SPAC1296.02" ; colour "7" ; gene "cox4 ||| SPAC1296.02" ; Alias "cox4" ; db_xref "SPD:43/43D11" ; GO "GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration
GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0006123; mitochondrial electron transport, cytochrome c to oxygen" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL187C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cox4" ; product "cytochrome c oxidase subunit IV (predicted)" ;
chromosome1 GeneDB CDS 711301 711412 . + . mRNA SPAC1296.02 ; colour "7" ;
chromosome1 GeneDB CDS 711768 712150 . + . mRNA SPAC1296.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 711413 711418 . + . misc_feature unknown_512 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 711413 711767 . + . intron SPAC1296.02 ; Alias "cox4" ; db_xref "SPD:43/43D11" ; systematic_id "SPAC1296.02" ; primary_name "cox4" ; gene "cox4 ||| SPAC1296.02" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 711753 711767 . + . misc_feature unknown_513 ; colour "6" ; note "ctaacattcttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 712151 712208 . + . mRNA SPAC1296.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1296.02" ; systematic_id "SPAC1296.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 712491 714014 . - . mRNA SPAC1296.03c ; systematic_id "SPAC1296.03c" ; colour "2" ; gene "sxa2 ||| SPAC1296.03c" ; Alias "sxa2" ; db_xref "SPD:24/24G01" ; GO "GO:0000747; conjugation with cellular fusion
GO:0004185; serine carboxypeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is P-factor; db_xref=PMID:10792724; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "sxa2" ; product "serine carboxypeptidase Sxa2" ; EC_number "3.4.16.5" ;
chromosome1 GeneDB CDS 712491 714014 . - . mRNA SPAC1296.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 715377 715479 . + . mRNA SPAC1296.04 ; ID "SPAC1296.04" ; systematic_id "SPAC1296.04" ; gene "SPAC1296.04 ||| mug65" ; note "mRNA from spc05626" ;
chromosome1 GeneDB CDS_parts 715480 716621 . + . mRNA SPAC1296.04 ; systematic_id "SPAC1296.04" ; colour "7" ; gene "SPAC1296.04 ||| mug65" ; note "similarity is *very low* but they are reciprocal best hits, also both seem to contain novel dysferlin-C terminal domain" ; Alias "mug65" ; db_xref "SPD:06/06G02" ; GO "GO:0030476; spore wall assembly (sensu Fungi)
GO:0005829; cytosol" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER046W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; date=20020429" ; primary_name "mug65" ; product "spore wall assembly protein (predicted)" ;
chromosome1 GeneDB CDS 715480 715535 . + . mRNA SPAC1296.04 ; colour "7" ;
chromosome1 GeneDB CDS 715583 715721 . + . mRNA SPAC1296.04 ; colour "7" ;
chromosome1 GeneDB CDS 715994 716146 . + . mRNA SPAC1296.04 ; colour "7" ;
chromosome1 GeneDB CDS 716223 716621 . + . mRNA SPAC1296.04 ; colour "7" ;
chromosome1 GeneDB intron 715536 715582 . + . intron SPAC1296.04 ; db_xref "SPD:06/06G02" ; systematic_id "SPAC1296.04" ; gene "SPAC1296.04 ||| mug65" ; note "confirmed intron" ;
chromosome1 GeneDB intron 715722 715993 . + . intron SPAC1296.04 ; db_xref "SPD:06/06G02" ; systematic_id "SPAC1296.04" ; gene "SPAC1296.04 ||| mug65" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 716147 716152 . + . misc_feature unknown_514 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 716207 716222 . + . misc_feature unknown_515 ; colour "6" ; note "ttaacgttttctatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 716622 716827 . + . mRNA SPAC1296.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1296.04" ; systematic_id "SPAC1296.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 716940 717804 . - . mRNA SPAC1296.05c ; db_xref "SPD:11/11E12" ; systematic_id "SPAC1296.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0000079; regulation of cyclin-dependent protein kinase activity" ; gene "SPAC1296.05c" ; product "cyclin L family cyclin (predicted)" ;
chromosome1 GeneDB CDS 716940 717585 . - . mRNA SPAC1296.05c ; colour "7" ;
chromosome1 GeneDB CDS 717674 717804 . - . mRNA SPAC1296.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 717586 717598 . - . misc_feature unknown_516 ; colour "6" ; note "ttaacattgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 717668 717673 . - . misc_feature unknown_517 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 717803 717871 . - . mRNA SPAC1296.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1296.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 718119 718190 . - . tRNA SPATRNAGLU.01 ; systematic_id "SPATRNAGLU.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033402; TTC codon-amino acid adaptor activity" ; gene "SPATRNAGLU.01" ; product "tRNA Glutamic acid" ; note "tRNA Glu anticodon TTC" ;
chromosome1 GeneDB 5'-UTR 719411 719446 . + . mRNA SPAC1296.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1296.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 719447 721410 . + . mRNA SPAC1296.06 ; systematic_id "SPAC1296.06" ; colour "7" ; gene "SPAC1296.06 ||| tah18" ; Alias "tah18" ; db_xref "SPD:46/46C01" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0050660; FAD binding
GO:0010181; FMN binding
GO:0050661; NADP binding
GO:0016491; oxidoreductase activity
GO:0016226; iron-sulfur cluster assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human NDOR1 ortholog; date=20081124" ; primary_name "tah18" ; product "NADPH-dependent diflavin oxidoreductase, involved in iron-sulphur cluster assembly Tah18 (predicted)" ;
chromosome1 GeneDB CDS 719447 719581 . + . mRNA SPAC1296.06 ; colour "7" ;
chromosome1 GeneDB CDS 719663 719740 . + . mRNA SPAC1296.06 ; colour "7" ;
chromosome1 GeneDB CDS 719906 720024 . + . mRNA SPAC1296.06 ; colour "7" ;
chromosome1 GeneDB CDS 720066 721410 . + . mRNA SPAC1296.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 719582 719587 . + . misc_feature unknown_518 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 719650 719662 . + . misc_feature unknown_519 ; colour "6" ; note "ctaattattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 719741 719746 . + . misc_feature unknown_520 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 719889 719905 . + . misc_feature unknown_521 ; colour "6" ; note "gtaacttattttcaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 720025 720030 . + . misc_feature unknown_522 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 720048 720065 . + . misc_feature unknown_523 ; colour "6" ; note "cttacttattttttgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 721406 721513 . + . misc_feature unknown_524 ; note "nominal overlap with cosmid SPAC1296, EM:AL035439 S. pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 721617 723425 . - . mRNA SPAPJ696.01c ; Alias "vps17" ; systematic_id "SPAPJ696.01c" ; colour "2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR132W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0031965; nuclear membrane
GO:0005628; prospore membrane
GO:0030904; retromer complex
GO:0030904; retromer complex
GO:0035091; phosphoinositide binding
GO:0006886; intracellular protein transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0042147; retrograde transport, endosome to Golgi
GO:0030437; sporulation (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)" ; gene "vps17 ||| SPAPJ696.01c" ; primary_name "vps17" ; product "retromer complex subunit Vps17" ;
chromosome1 GeneDB CDS 721617 722243 . - . mRNA SPAPJ696.01c ; colour "2" ;
chromosome1 GeneDB CDS 722288 722493 . - . mRNA SPAPJ696.01c ; colour "2" ;
chromosome1 GeneDB CDS 722542 722995 . - . mRNA SPAPJ696.01c ; colour "2" ;
chromosome1 GeneDB CDS 723063 723425 . - . mRNA SPAPJ696.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 722244 722257 . - . misc_feature unknown_525 ; colour "6" ; note "cttactggaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 722282 722287 . - . misc_feature unknown_526 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 722494 722510 . - . misc_feature unknown_527 ; colour "6" ; note "ctaacttttcgacatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 722536 722541 . - . misc_feature unknown_528 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 722996 723007 . - . misc_feature unknown_529 ; colour "6" ; note "ctaacttcgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 723057 723062 . - . misc_feature unknown_530 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 723424 723645 . - . mRNA SPAPJ696.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPJ696.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 724251 724288 . + . mRNA SPAPJ696.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPJ696.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 724289 725720 . + . mRNA SPAPJ696.02 ; systematic_id "SPAPJ696.02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR016C and YFR024C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0007015; actin filament organization
GO:0006897; endocytosis" ; gene "SPAPJ696.02" ; product "actin cortical patch component Lsb4 (predicted)" ;
chromosome1 GeneDB CDS 724289 724325 . + . mRNA SPAPJ696.02 ; colour "7" ;
chromosome1 GeneDB CDS 724378 724418 . + . mRNA SPAPJ696.02 ; colour "7" ;
chromosome1 GeneDB CDS 724506 725720 . + . mRNA SPAPJ696.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 724326 724331 . + . misc_feature unknown_531 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 724366 724377 . + . misc_feature unknown_532 ; colour "6" ; note "ctaacatttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 724419 724424 . + . misc_feature unknown_533 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 724488 724505 . + . misc_feature unknown_534 ; colour "6" ; note "ttaactgttttaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 725721 725901 . + . mRNA SPAPJ696.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPJ696.02" ; systematic_id "SPAPJ696.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 725957 726080 . - . mRNA SPAC22G7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22G7.01c" ; systematic_id "SPAC22G7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 726081 728076 . - . mRNA SPAC22G7.01c ; systematic_id "SPAC22G7.01c" ; colour "7" ; gene "SPAPJ696.03c ||| SPAC22G7.01c" ; Alias "SPAPJ696.03c" ; db_xref "SPD:27/27D04" ; synonym "SPAPJ696.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL029W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0034396; negative regulation of transcription from RNA polymerase II promoter in response to iron ion" ; primary_name "SPAPJ696.03c" ; product "iron responsive transcriptional regulator, peptidase family (predicted)" ; EC_number "3.4.11.9" ;
chromosome1 GeneDB CDS 726081 727731 . - . mRNA SPAC22G7.01c ; colour "7" ;
chromosome1 GeneDB CDS 727846 727901 . - . mRNA SPAC22G7.01c ; colour "7" ;
chromosome1 GeneDB CDS 727987 728076 . - . mRNA SPAC22G7.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 726710 726809 . + . misc_feature unknown_535 ; note "nominal overlap with p696 and cosmid SPAC22G7" ;
chromosome1 GeneDB misc_feature 727732 727745 . - . misc_feature unknown_536 ; colour "2" ; note "splice branch and acceptor sequence, ctaactgtacctag" ;
chromosome1 GeneDB intron 727732 727845 . - . intron SPAC22G7.01c ; Alias "SPAPJ696.03c" ; db_xref "SPD:27/27D04" ; systematic_id "SPAC22G7.01c" ; primary_name "SPAPJ696.03c" ; gene "SPAPJ696.03c ||| SPAC22G7.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 727840 727845 . - . misc_feature unknown_537 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 727902 727918 . - . misc_feature unknown_538 ; colour "2" ; note "splice branch and acceptor sequence, tattaacaattatat ag" ;
chromosome1 GeneDB intron 727902 727986 . - . intron SPAC22G7.01c ; Alias "SPAPJ696.03c" ; db_xref "SPD:27/27D04" ; systematic_id "SPAC22G7.01c" ; primary_name "SPAPJ696.03c" ; gene "SPAPJ696.03c ||| SPAC22G7.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 727981 727986 . - . misc_feature unknown_539 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 728077 728242 . - . mRNA SPAC22G7.01c ; Alias "SPAPJ696.03c" ; ID "SPAC22G7.01c" ; systematic_id "SPAC22G7.01c" ; primary_name "SPAPJ696.03c" ; gene "SPAPJ696.03c ||| SPAC22G7.01c" ; note "mRNA from AU011817" ;
chromosome1 GeneDB 5'-UTR 728375 728419 . + . mRNA SPAC22G7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22G7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 728420 731706 . + . mRNA SPAC22G7.02 ; systematic_id "SPAC22G7.02" ; colour "2" ; gene "kap111 ||| SPAC22G7.02" ; Alias "kap111" ; db_xref "SPD:48/48B08" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0008565; protein transporter activity
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15195092; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YGL016W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "kap111" ; product "karyopherin Kap111 (predicted)" ;
chromosome1 GeneDB CDS 728420 728452 . + . mRNA SPAC22G7.02 ; colour "2" ;
chromosome1 GeneDB CDS 728494 728619 . + . mRNA SPAC22G7.02 ; colour "2" ;
chromosome1 GeneDB CDS 728664 730685 . + . mRNA SPAC22G7.02 ; colour "2" ;
chromosome1 GeneDB CDS 730726 730963 . + . mRNA SPAC22G7.02 ; colour "2" ;
chromosome1 GeneDB CDS 731004 731188 . + . mRNA SPAC22G7.02 ; colour "2" ;
chromosome1 GeneDB CDS 731227 731322 . + . mRNA SPAC22G7.02 ; colour "2" ;
chromosome1 GeneDB CDS 731369 731550 . + . mRNA SPAC22G7.02 ; colour "2" ;
chromosome1 GeneDB CDS 731616 731706 . + . mRNA SPAC22G7.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 728453 728458 . + . misc_feature unknown_540 ; colour "2" ; note "splice donor sequence, gtttgt" ;
chromosome1 GeneDB misc_feature 728478 728493 . + . misc_feature unknown_541 ; colour "2" ; note "splice branch and acceptor sequence, ctaatgcatgctata g" ;
chromosome1 GeneDB misc_feature 728620 728625 . + . misc_feature unknown_542 ; colour "2" ; note "splice donor sequence, gtttgt" ;
chromosome1 GeneDB misc_feature 728653 728663 . + . misc_feature unknown_543 ; colour "2" ; note "splice branch and acceptor sequence, ctgatcattag" ;
chromosome1 GeneDB misc_feature 730686 730691 . + . misc_feature unknown_544 ; colour "2" ; note "splice donor sequence, gtaggt" ;
chromosome1 GeneDB misc_feature 730710 730725 . + . misc_feature unknown_545 ; colour "2" ; note "splice branch and acceptor sequence, tactaatatgatata g" ;
chromosome1 GeneDB misc_feature 730964 730969 . + . misc_feature unknown_546 ; colour "2" ; note "splice donor sequence, gtaaat" ;
chromosome1 GeneDB misc_feature 730989 731003 . + . misc_feature unknown_547 ; colour "2" ; note "splice branch and acceptor sequence, tactaactaaaatag" ;
chromosome1 GeneDB misc_feature 731189 731194 . + . misc_feature unknown_548 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 731214 731226 . + . misc_feature unknown_549 ; colour "2" ; note "splice branch and acceptor sequence, tattaacattaag" ;
chromosome1 GeneDB misc_feature 731323 731328 . + . misc_feature unknown_550 ; colour "2" ; note "splice donor sequence, gtaaac" ;
chromosome1 GeneDB misc_feature 731350 731368 . + . misc_feature unknown_551 ; colour "2" ; note "splice branch and acceptor sequence, aactaatactgattt atag" ;
chromosome1 GeneDB misc_feature 731551 731556 . + . misc_feature unknown_552 ; colour "2" ; note "splice donor sequence, gtaagc" ;
chromosome1 GeneDB misc_feature 731599 731615 . + . misc_feature unknown_553 ; colour "2" ; note "splice branch and acceptor sequence, ttaacaacaaattct ag" ;
chromosome1 GeneDB 3'-UTR 731707 731731 . + . mRNA SPAC22G7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22G7.02" ; systematic_id "SPAC22G7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 731938 732648 . + . mRNA SPAC22G7.03 ; db_xref "SPD:08/08D07" ; systematic_id "SPAC22G7.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC22G7.03" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 731938 732648 . + . mRNA SPAC22G7.03 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 732649 732665 . + . mRNA SPAC22G7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22G7.03" ; systematic_id "SPAC22G7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 732831 732879 . + . mRNA SPAC22G7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22G7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 732880 736465 . + . mRNA SPAC22G7.04 ; systematic_id "SPAC22G7.04" ; colour "7" ; gene "SPAC22G7.04 ||| ubp13" ; Alias "ubp13" ; db_xref "SPD:48/48D12" ; synonym "pan2" ; GO "GO:0031251; PAN complex
GO:0005737; cytoplasm
GO:0004535; poly(A)-specific ribonuclease activity
GO:0006397; mRNA processing
GO:0006301; postreplication repair
GO:0004843; ubiquitin-specific protease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human USP52 ortholog; date=20101020 ||| term=warning, gene structure updated; date=20101020" ; primary_name "ubp13" ; product "ubiquitin C-terminal hydrolase, poly(A)-specific ribonuclease complex subunit Pan2 (predicted)" ; reserved_name "ubp13" ;
chromosome1 GeneDB CDS 732880 732897 . + . mRNA SPAC22G7.04 ; colour "7" ;
chromosome1 GeneDB CDS 732942 733040 . + . mRNA SPAC22G7.04 ; colour "7" ;
chromosome1 GeneDB CDS 733085 733251 . + . mRNA SPAC22G7.04 ; colour "7" ;
chromosome1 GeneDB CDS 733369 733495 . + . mRNA SPAC22G7.04 ; colour "7" ;
chromosome1 GeneDB CDS 733536 734113 . + . mRNA SPAC22G7.04 ; colour "7" ;
chromosome1 GeneDB CDS 734151 735457 . + . mRNA SPAC22G7.04 ; colour "7" ;
chromosome1 GeneDB CDS 735495 736465 . + . mRNA SPAC22G7.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 732898 732903 . + . misc_feature unknown_554 ; colour "2" ; note "splice donor sequence, gtaatt" ;
chromosome1 GeneDB misc_feature 732930 732941 . + . misc_feature unknown_555 ; colour "2" ; note "splice branch and acceptor sequence, ttaacaaattag" ;
chromosome1 GeneDB misc_feature 733041 733046 . + . misc_feature unknown_556 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 733058 733084 . + . misc_feature unknown_557 ; colour "2" ; note "splice branch and acceptor sequence, ttaattatgaaacta aactag" ;
chromosome1 GeneDB misc_feature 733252 733257 . + . misc_feature unknown_558 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 733522 733535 . + . misc_feature unknown_559 ; colour "2" ; note "splice branch and acceptor sequence, ctaacatttaatag" ;
chromosome1 GeneDB misc_feature 734114 734119 . + . misc_feature unknown_560 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 734139 734150 . + . misc_feature unknown_561 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgacttag" ;
chromosome1 GeneDB misc_feature 735458 735463 . + . misc_feature unknown_562 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB misc_feature 735483 735494 . + . misc_feature unknown_563 ; colour "2" ; note "splice branch and acceptor sequence, ctaactagacag" ;
chromosome1 GeneDB 3'-UTR 736466 736515 . + . mRNA SPAC22G7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22G7.04" ; systematic_id "SPAC22G7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 736735 736796 . + . mRNA SPAC22G7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22G7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 736797 738720 . + . mRNA SPAC22G7.05 ; db_xref "SPD:26/26G11" ; systematic_id "SPAC22G7.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YNL308C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; gene "SPAC22G7.05" ; product "krr family protein (predicted)" ;
chromosome1 GeneDB CDS 736797 737037 . + . mRNA SPAC22G7.05 ; colour "7" ;
chromosome1 GeneDB CDS 737165 738720 . + . mRNA SPAC22G7.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 736843 737191 . + . misc_feature unknown_564 ; note "the sequence of this region has only been determined on one strand" ;
chromosome1 GeneDB misc_feature 737038 737043 . + . misc_feature unknown_565 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 737149 737164 . + . misc_feature unknown_566 ; colour "2" ; note "splice branch and acceptor sequence, tactaactaaaatta g" ;
chromosome1 GeneDB 3'-UTR 738721 738782 . + . mRNA SPAC22G7.05 ; ID "SPAC22G7.05" ; db_xref "SPD:26/26G11" ; systematic_id "SPAC22G7.05" ; gene "SPAC22G7.05" ; note "mRNA from AU012946" ;
chromosome1 GeneDB 3'-UTR 739167 739299 . - . mRNA SPAC22G7.06c ; Alias "ura1" ; ID "SPAC22G7.06c" ; db_xref "SPD:34/34C07" ; systematic_id "SPAC22G7.06c" ; gene "ura1 ||| SPAC22G7.06c" ; primary_name "ura1" ; note "mRNA from AU006959" ;
chromosome1 GeneDB CDS_parts 739300 746034 . - . mRNA SPAC22G7.06c ; systematic_id "SPAC22G7.06c" ; colour "2" ; gene "ura1 ||| SPAC22G7.06c" ; Alias "ura1" ; db_xref "KEGG:MAP00240; ||| KEGG:MAP00251; ||| KEGG:MAP00252; ||| SPD:34/34C07" ; GO "GO:0004070; aspartate carbamoyltransferase activity
GO:0004088; carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0004151; dihydroorotase activity
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0006541; glutamine metabolic process
GO:0003922; GMP synthase (glutamine-hydrolyzing) activity
GO:0000050; urea cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hyperammonemia; date=20060725 ||| term=orthologous to S. cerevisiae YJL130C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target of UTP; qualifier=inhibited_by; db_xref=PMID:8590465; date=20090223 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ura1" ; product "carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate carbamoyltransferase Ura1" ; EC_number "6.3.5.5 ||| 2.1.3.2 ||| 3.5.2.3" ;
chromosome1 GeneDB CDS 739300 746034 . - . mRNA SPAC22G7.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 746035 746099 . - . mRNA SPAC22G7.06c ; Alias "ura1" ; ID "SPAC22G7.06c" ; db_xref "EMBL:X81841" ; systematic_id "SPAC22G7.06c" ; gene "ura1 ||| SPAC22G7.06c" ; primary_name "ura1" ;
chromosome1 GeneDB CDS_parts 747143 748384 . - . mRNA SPAC22G7.07c ; db_xref "SPD:19/19G12" ; systematic_id "SPAC22G7.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL192W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0001734; mRNA (N6-adenosine)-methyltransferase activity
GO:0080009; mRNA methylation
GO:0007126; meiosis" ; gene "SPAC22G7.07c" ; product "mRNA (N6-adenosine)-methyltransferase (predicted)" ; EC_number "2.1.1.62" ;
chromosome1 GeneDB CDS 747143 748384 . - . mRNA SPAC22G7.07c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 749495 749929 . + . mRNA SPAC22G7.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22G7.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 749930 751588 . + . mRNA SPAC22G7.08 ; systematic_id "SPAC22G7.08" ; colour "7" ; gene "ppk8 ||| SPAC22G7.08" ; Alias "ppk8" ; db_xref "SPD:34/34G08" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNL183C and YOR267C and YDL025C and YDL214C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110" ; primary_name "ppk8" ; product "serine/threonine protein kinase Ppk8 (predicted)" ;
chromosome1 GeneDB CDS 749930 749995 . + . mRNA SPAC22G7.08 ; colour "7" ;
chromosome1 GeneDB CDS 750113 751588 . + . mRNA SPAC22G7.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 749996 750001 . + . misc_feature unknown_567 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 750096 750112 . + . misc_feature unknown_568 ; colour "2" ; note "splice branch and acceptor sequence, ctaactaatgatatt ag" ;
chromosome1 GeneDB 3'-UTR 751647 751672 . - . mRNA SPAC22G7.09c ; Alias "nup45" ; ID "SPAC22G7.09c" ; db_xref "SPD:24/24H07" ; systematic_id "SPAC22G7.09c" ; primary_name "nup45" ; gene "nup45 ||| SPAC22G7.09c" ; note "mRNA from AU014161" ;
chromosome1 GeneDB CDS_parts 751673 753210 . - . mRNA SPAC22G7.09c ; systematic_id "SPAC22G7.09c" ; colour "2" ; gene "nup45 ||| SPAC22G7.09c" ; Alias "nup45" ; db_xref "SPD:24/24H07" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0051301; cell division" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=FG repeat; date=19700101 ||| term=orthologous to S. cerevisiae YGL172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nup45" ; product "nucleoporin Nup45" ;
chromosome1 GeneDB CDS 751673 751800 . - . mRNA SPAC22G7.09c ; colour "2" ;
chromosome1 GeneDB CDS 751840 752131 . - . mRNA SPAC22G7.09c ; colour "2" ;
chromosome1 GeneDB CDS 752188 752296 . - . mRNA SPAC22G7.09c ; colour "2" ;
chromosome1 GeneDB CDS 752343 752429 . - . mRNA SPAC22G7.09c ; colour "2" ;
chromosome1 GeneDB CDS 752473 753079 . - . mRNA SPAC22G7.09c ; colour "2" ;
chromosome1 GeneDB CDS 753156 753210 . - . mRNA SPAC22G7.09c ; colour "2" ;
chromosome1 GeneDB intron 751801 751839 . - . intron SPAC22G7.09c ; Alias "nup45" ; db_xref "SPD:24/24H07" ; systematic_id "SPAC22G7.09c" ; primary_name "nup45" ; gene "nup45 ||| SPAC22G7.09c" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 752132 752146 . - . misc_feature unknown_569 ; colour "2" ; note "splice branch and acceptor sequence, ctaactaaaataaag" ;
chromosome1 GeneDB misc_feature 752182 752187 . - . misc_feature unknown_570 ; colour "2" ; note "splice donor sequence, gtgagt" ;
chromosome1 GeneDB misc_feature 752297 752312 . - . misc_feature unknown_571 ; colour "2" ; note "splice branch and acceptor sequence, ctaatcatgtccgta g" ;
chromosome1 GeneDB misc_feature 752337 752342 . - . misc_feature unknown_572 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 752430 752444 . - . misc_feature unknown_573 ; colour "2" ; note "splice branch and acceptor sequence, ttaacaaaaaaacag" ;
chromosome1 GeneDB misc_feature 752467 752472 . - . misc_feature unknown_574 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 753080 753094 . - . misc_feature unknown_575 ; colour "2" ; note "splice branch and acceptor sequence, tattaaccttttcag" ;
chromosome1 GeneDB misc_feature 753150 753155 . - . misc_feature unknown_576 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB 5'-UTR 753209 753402 . - . mRNA SPAC22G7.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22G7.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 753677 753703 . + . mRNA SPAC22G7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22G7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 753704 754830 . + . mRNA SPAC22G7.10 ; db_xref "SPD:17/17F12" ; systematic_id "SPAC22G7.10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR093C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human FIP1L1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; GO "GO:0005847; mRNA cleavage and polyadenylation specificity factor complex
GO:0006378; mRNA polyadenylation
GO:0006379; mRNA cleavage" ; gene "SPAC22G7.10" ; product "mRNA cleavage and polyadenylation specificity factor complex subunit, Fip1 homolog (predicted)" ;
chromosome1 GeneDB CDS 753704 753841 . + . mRNA SPAC22G7.10 ; colour "7" ;
chromosome1 GeneDB CDS 753887 753939 . + . mRNA SPAC22G7.10 ; colour "7" ;
chromosome1 GeneDB CDS 753987 754830 . + . mRNA SPAC22G7.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 753842 753847 . + . misc_feature unknown_577 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB misc_feature 753868 753886 . + . misc_feature unknown_578 ; colour "2" ; note "splice branch and acceptor sequence, ctaactgctaatttt gtag" ;
chromosome1 GeneDB misc_feature 753940 753945 . + . misc_feature unknown_579 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 753972 753986 . + . misc_feature unknown_580 ; colour "2" ; note "splice branch and acceptor sequence, tactaataatgttag" ;
chromosome1 GeneDB 3'-UTR 754831 755655 . + . mRNA SPAC22G7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22G7.10" ; systematic_id "SPAC22G7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 755080 755502 . - . mRNA SPAC22G7.11c ; systematic_id "SPAC22G7.11c" ; colour "10" ; gene "SPAC4G8.01c ||| SPAC22G7.11c" ; Alias "SPAC4G8.01c" ; db_xref "SPD:03/03D09" ; synonym "SPAC4G8.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa conidiation-specific protein 6; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC869.09 and SPAC11D3.01C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "SPAC4G8.01c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 755080 755502 . - . mRNA SPAC22G7.11c ; colour "10" ;
chromosome1 GeneDB misc_feature 755247 755359 . + . misc_feature unknown_581 ; note "nominal overlap with cosmid SPAC4G8 and cosmid SPAC22G7" ;
chromosome1 GeneDB 3'-UTR 756479 756597 . - . mRNA SPAC4G8.02c ; Alias "sss1" ; ID "SPAC4G8.02c" ; db_xref "SPD:04/04E12" ; systematic_id "SPAC4G8.02c" ; primary_name "sss1" ; gene "sss1 ||| SPAC4G8.02c" ; note "mRNA from AU013667" ;
chromosome1 GeneDB CDS_parts 756598 757085 . - . mRNA SPAC4G8.02c ; systematic_id "SPAC4G8.02c" ; colour "7" ; gene "sss1 ||| SPAC4G8.02c" ; Alias "sss1" ; db_xref "SPD:04/04E12" ; GO "GO:0005784; translocon complex
GO:0006616; SRP-dependent cotranslational protein targeting to membrane, translocation
GO:0008565; protein transporter activity
GO:0006620; posttranslational protein targeting to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "sss1" ; product "translocon gamma subunit Sss1 (predicted)" ; reserved_name "sss1" ;
chromosome1 GeneDB CDS 756598 756610 . - . mRNA SPAC4G8.02c ; colour "7" ;
chromosome1 GeneDB CDS 756779 756881 . - . mRNA SPAC4G8.02c ; colour "7" ;
chromosome1 GeneDB CDS 756989 757085 . - . mRNA SPAC4G8.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 756611 756628 . - . misc_feature unknown_582 ; colour "2" ; note "splice branch and acceptor sequence, tattaacattaatat tag" ;
chromosome1 GeneDB intron 756611 756778 . - . intron SPAC4G8.02c ; Alias "sss1" ; db_xref "SPD:04/04E12" ; systematic_id "SPAC4G8.02c" ; primary_name "sss1" ; gene "sss1 ||| SPAC4G8.02c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 756773 756778 . - . misc_feature unknown_583 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 756882 756895 . - . misc_feature unknown_584 ; colour "2" ; note "splice branch and acceptor sequence, tactaatagaacag" ;
chromosome1 GeneDB intron 756882 756988 . - . intron SPAC4G8.02c ; Alias "sss1" ; db_xref "SPD:04/04E12" ; systematic_id "SPAC4G8.02c" ; primary_name "sss1" ; gene "sss1 ||| SPAC4G8.02c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 756983 756988 . - . misc_feature unknown_585 ; colour "2" ; note "splice donor sequence, gtatcg" ;
chromosome1 GeneDB 5'-UTR 757084 757087 . - . mRNA SPAC4G8.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G8.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 757966 758207 . - . mRNA SPAC4G8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G8.03c" ; systematic_id "SPAC4G8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 758208 760550 . - . mRNA SPAC4G8.03c ; db_xref "SPD:28/28D08" ; systematic_id "SPAC4G8.03c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YGL014W and YGL178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0003729; mRNA binding
GO:0005737; cytoplasm" ; gene "SPAC4G8.03c" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB CDS 758208 760550 . - . mRNA SPAC4G8.03c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 760549 761871 . - . mRNA SPAC4G8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 760551 766606 . - . misc_feature unknown_586 ; note "low complexity gene-free region" ;
chromosome1 GeneDB misc_feature 766607 766836 . - . misc_feature SPAC4G8.15c ; db_xref "SPD:01/01B01" ; systematic_id "SPAC4G8.15c" ; controlled_curation "term=dubious; date=19700101 ||| term=below 100 amino acid size threshold; date=19700101" ; colour "6" ; gene "SPAC4G8.15c" ; product "dubious" ; note "transcript data does not support this feature" ;
chromosome1 GeneDB misc_feature 766721 766734 . - . misc_feature unknown_587 ; colour "6" ; note "ctaatcataactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 766804 766809 . - . misc_feature unknown_588 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 767480 767708 . + . mRNA SPAC4G8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 767709 770090 . + . mRNA SPAC4G8.04 ; db_xref "SPD:46/46H01" ; systematic_id "SPAC4G8.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog (cannot be distinguished); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005096; GTPase activator activity" ; gene "SPAC4G8.04" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB CDS 767709 769748 . + . mRNA SPAC4G8.04 ; colour "7" ;
chromosome1 GeneDB CDS 769812 770090 . + . mRNA SPAC4G8.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 769749 769754 . + . misc_feature unknown_589 ; colour "2" ; note "splice donor sequence, gtacga" ;
chromosome1 GeneDB misc_feature 769792 769811 . + . misc_feature unknown_590 ; colour "2" ; note "splice branch and acceptor sequence, tactaactacttttt tttag" ;
chromosome1 GeneDB 3'-UTR 770091 770176 . + . mRNA SPAC4G8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G8.04" ; systematic_id "SPAC4G8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 770560 770622 . + . mRNA SPAC4G8.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G8.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 770623 772323 . + . mRNA SPAC4G8.05 ; systematic_id "SPAC4G8.05" ; colour "2" ; gene "ppk14 ||| SPAC4G8.05" ; Alias "ppk14" ; db_xref "SPD:35/35D07" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0019236; response to pheromone
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNR047W and YCR091W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk14" ; product "serine/threonine protein kinase Ppk14 (predicted)" ;
chromosome1 GeneDB CDS 770623 772323 . + . mRNA SPAC4G8.05 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 772324 772595 . + . mRNA SPAC4G8.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G8.05" ; systematic_id "SPAC4G8.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 772650 772672 . - . mRNA SPAC4G8.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G8.06c" ; systematic_id "SPAC4G8.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 772673 773929 . - . mRNA SPAC4G8.06c ; systematic_id "SPAC4G8.06c" ; colour "7" ; gene "trm12 ||| SPAC4G8.06c" ; Alias "trm12" ; db_xref "SPD:20/20A08" ; GO "GO:0008175; tRNA methyltransferase activity
GO:0030488; tRNA methylation
GO:0031591; wybutosine biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human TRMT12 homolog; date=20110131" ; primary_name "trm12" ; product "tRNA methyltransferase Trm12 (predicted)" ;
chromosome1 GeneDB CDS 772673 773929 . - . mRNA SPAC4G8.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 773928 774027 . - . mRNA SPAC4G8.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G8.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 774000 776013 . - . mRNA SPAC4G8.07c ; db_xref "SPD:27/27E04" ; systematic_id "SPAC4G8.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0030696; tRNA (m5U54) methyltransferase activity
GO:0030488; tRNA methylation" ; gene "SPAC4G8.07c" ; product "tRNA (m5U54) methyltransferase Trm2 (predicted)" ;
chromosome1 GeneDB CDS 774000 774023 . - . mRNA SPAC4G8.07c ; colour "7" ;
chromosome1 GeneDB CDS 774155 774403 . - . mRNA SPAC4G8.07c ; colour "7" ;
chromosome1 GeneDB CDS 774453 775290 . - . mRNA SPAC4G8.07c ; colour "7" ;
chromosome1 GeneDB CDS 775414 775513 . - . mRNA SPAC4G8.07c ; colour "7" ;
chromosome1 GeneDB CDS 775641 776013 . - . mRNA SPAC4G8.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 774024 774037 . - . misc_feature unknown_591 ; colour "2" ; note "splice branch and acceptor sequence, ttctaacattttag" ;
chromosome1 GeneDB misc_feature 774149 774154 . - . misc_feature unknown_592 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 774404 774420 . - . misc_feature unknown_593 ; colour "2" ; note "splice branch and acceptor sequence, ctgacacattaaaat ag" ;
chromosome1 GeneDB misc_feature 774447 774452 . - . misc_feature unknown_594 ; colour "2" ; note "splice donor sequence, gtaagg" ;
chromosome1 GeneDB misc_feature 775291 775304 . - . misc_feature unknown_595 ; colour "2" ; note "splice branch and acceptor sequence, tattaaccgattag" ;
chromosome1 GeneDB misc_feature 775408 775413 . - . misc_feature unknown_596 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 775514 775532 . - . misc_feature unknown_597 ; colour "2" ; note "splice branch and acceptor sequence, aactaaccaactata g" ;
chromosome1 GeneDB misc_feature 775635 775640 . - . misc_feature unknown_598 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 776012 776062 . - . mRNA SPAC4G8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 776272 777066 . + . misc_RNA SPNCRNA.159 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.159" ; synonym "SPNG135" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "possible introns detected, may be highly spliced protein" ;
chromosome1 GeneDB intron 776540 776588 . + . intron SPNCRNA.159 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.159" ;
chromosome1 GeneDB intron 776759 776828 . + . intron SPNCRNA.159 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.159" ;
chromosome1 GeneDB CDS_parts 777259 778283 . + . mRNA SPAC4G8.08 ; db_xref "SPD:15/15D04" ; systematic_id "SPAC4G8.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YJL133W and YKR052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0031305; integral to mitochondrial inner membrane
GO:0005381; iron ion transmembrane transporter activity
GO:0048250; mitochondrial iron ion transport" ; gene "SPAC4G8.08" ; product "mitochondrial iron ion transporter (predicted)" ;
chromosome1 GeneDB CDS 777259 777287 . + . mRNA SPAC4G8.08 ; colour "7" ;
chromosome1 GeneDB CDS 777338 777731 . + . mRNA SPAC4G8.08 ; colour "7" ;
chromosome1 GeneDB CDS 777891 778283 . + . mRNA SPAC4G8.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 777287 777293 . + . misc_feature unknown_599 ; colour "2" ; note "splice donor sequence, gtacat" ;
chromosome1 GeneDB misc_feature 777319 777337 . + . misc_feature unknown_600 ; colour "2" ; note "splice branch and acceptor sequence, tactaacattgataa aaag" ;
chromosome1 GeneDB misc_feature 777732 777737 . + . misc_feature unknown_601 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 777875 777890 . + . misc_feature unknown_602 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttaaattata g" ;
chromosome1 GeneDB CDS_parts 778532 781156 . + . mRNA SPAC4G8.09 ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:38/38F10" ; systematic_id "SPAC4G8.09" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR382C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006429; leucyl-tRNA aminoacylation
GO:0004823; leucine-tRNA ligase activity
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0003729; mRNA binding
GO:0000372; Group I intron splicing" ; gene "SPAC4G8.09" ; product "mitochondrial leucine-tRNA ligase (predicted)" ; EC_number "6.1.1.4" ;
chromosome1 GeneDB CDS 778532 781156 . + . mRNA SPAC4G8.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 781157 781230 . + . mRNA SPAC4G8.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G8.09" ; systematic_id "SPAC4G8.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 781397 781486 . + . mRNA SPAC4G8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 781487 782035 . + . mRNA SPAC4G8.10 ; systematic_id "SPAC4G8.10" ; colour "7" ; gene "gos1 ||| SPAC4G8.10" ; Alias "gos1" ; db_xref "SPD:05/05F02" ; GO "GO:0016192; vesicle-mediated transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005484; SNAP receptor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gos1" ; product "SNARE Gos1 (predicted)" ;
chromosome1 GeneDB CDS 781487 782035 . + . mRNA SPAC4G8.10 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 782036 782331 . + . mRNA SPAC4G8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G8.10" ; systematic_id "SPAC4G8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 782142 783144 . - . mRNA SPAC4G8.11c ; systematic_id "SPAC4G8.11c" ; colour "7" ; gene "atp10 ||| SPAC4G8.11c" ; Alias "atp10" ; db_xref "SPD:14/14G05" ; GO "GO:0031305; integral to mitochondrial inner membrane
GO:0032592; integral to mitochondrial membrane
GO:0005743; mitochondrial inner membrane
GO:0051082; unfolded protein binding
GO:0033615; mitochondrial proton-transporting ATP synthase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR393W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atp10" ; product "F1-F0 ATPase assembly protein (predicted)" ;
chromosome1 GeneDB CDS 782142 782336 . - . mRNA SPAC4G8.11c ; colour "7" ;
chromosome1 GeneDB CDS 782438 782704 . - . mRNA SPAC4G8.11c ; colour "7" ;
chromosome1 GeneDB CDS 782803 783144 . - . mRNA SPAC4G8.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 782337 782347 . - . misc_feature unknown_603 ; colour "2" ; note "splice branch and acceptor sequence, ctaactagcag" ;
chromosome1 GeneDB misc_feature 782432 782437 . - . misc_feature unknown_604 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 782705 782720 . - . misc_feature unknown_605 ; colour "2" ; note "splice branch and acceptor sequence, tattgacacgtttta g" ;
chromosome1 GeneDB misc_feature 782797 782802 . - . misc_feature unknown_606 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB 5'-UTR 783145 783634 . - . mRNA SPAC4G8.11c ; ID "SPAC4G8.11c" ; systematic_id "SPAC4G8.11c" ; gene "atp10 ||| SPAC4G8.11c" ; note "UTR may contain introns" ; db_xref "PMID:18488015" ; Alias "atp10" ; synonym "SPNG136" ; primary_name "atp10" ;
chromosome1 GeneDB 3'-UTR 784532 784674 . - . mRNA SPAC4G8.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G8.12c" ; systematic_id "SPAC4G8.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 784675 786563 . - . mRNA SPAC4G8.12c ; db_xref "SPD:36/36H12" ; systematic_id "SPAC4G8.12c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR149C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0030176; integral to endoplasmic reticulum membrane
GO:0000026; alpha-1,2-mannosyltransferase activity" ; gene "SPAC4G8.12c" ; product "alpha-1,2-mannosyltransferase (predicted)" ;
chromosome1 GeneDB CDS 784675 785632 . - . mRNA SPAC4G8.12c ; colour "7" ;
chromosome1 GeneDB CDS 785698 785855 . - . mRNA SPAC4G8.12c ; colour "7" ;
chromosome1 GeneDB CDS 785896 786062 . - . mRNA SPAC4G8.12c ; colour "7" ;
chromosome1 GeneDB CDS 786161 786229 . - . mRNA SPAC4G8.12c ; colour "7" ;
chromosome1 GeneDB CDS 786274 786399 . - . mRNA SPAC4G8.12c ; colour "7" ;
chromosome1 GeneDB CDS 786440 786563 . - . mRNA SPAC4G8.12c ; colour "7" ;
chromosome1 GeneDB misc_feature 785633 785647 . - . misc_feature unknown_607 ; colour "2" ; note "splice branch and acceptor sequence, cactaactggattag" ;
chromosome1 GeneDB misc_feature 785692 785697 . - . misc_feature unknown_608 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 785856 785871 . - . misc_feature unknown_609 ; colour "2" ; note "splice branch and acceptor sequence, aactaacaagaatca g" ;
chromosome1 GeneDB misc_feature 785890 785895 . - . misc_feature unknown_610 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 786063 786075 . - . misc_feature unknown_611 ; colour "2" ; note "splice branch and acceptor sequence, ctaattttggcag" ;
chromosome1 GeneDB misc_feature 786155 786160 . - . misc_feature unknown_612 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 786230 786247 . - . misc_feature unknown_613 ; colour "2" ; note "splice branch and acceptor sequence, ttcttacatatccaa aag" ;
chromosome1 GeneDB misc_feature 786268 786273 . - . misc_feature unknown_614 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 786400 786410 . - . misc_feature unknown_615 ; colour "2" ; note "splice branch and acceptor sequence, ctaatataaag" ;
chromosome1 GeneDB misc_feature 786434 786439 . - . misc_feature unknown_616 ; colour "2" ; note "splice donor sequence, gtatat" ;
chromosome1 GeneDB 5'-UTR 786562 786567 . - . mRNA SPAC4G8.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G8.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 786895 787118 . - . mRNA SPAC4G8.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G8.13c" ; systematic_id "SPAC4G8.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 787119 789164 . - . mRNA SPAC4G8.13c ; systematic_id "SPAC4G8.13c" ; colour "2" ; gene "prz1 ||| SPAC4G8.13c" ; Alias "prz1" ; db_xref "SPD:27/27F05" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0043565; sequence-specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006874; calcium ion homeostasis
GO:0019722; calcium-mediated signaling
GO:0030644; chloride ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; db_xref=PMID:12637524; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=target is Ppb1; qualifier=phosphorylated_by; db_xref=PMID:12637524; cv=pt_mod; date=19700101 ||| term=gene expression, transcriptionally regulates pmc1; db_xref=PMID:12637524; cv=gene_ex; date=19700101 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:12637524; cv=localization; date=19700101 ||| term=orthologous to S. cerevisiae YNL027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Prz1; db_xref=PMID:16928959; date=20090316 ||| term=gene expression, promoter contains CDRE; db_xref=PMID:16928959; date=20090316 ||| term=DNA binding specificity, binds CDRE 5'-AGCCTC-3'; evidence=IDA; db_xref=PMID:16928959; date=20090316" ; primary_name "prz1" ; product "calcineurin responsive transcription factor Prz1" ;
chromosome1 GeneDB CDS 787119 789164 . - . mRNA SPAC4G8.13c ; colour "2" ;
chromosome1 GeneDB CDS_parts 790884 792168 . - . mRNA SPAC16C9.01c ; systematic_id "SPAC16C9.01c" ; colour "10" ; gene "SPAC4G8.14c ||| SPAC16C9.01c" ; Alias "SPAC4G8.14c" ; db_xref "SPD:22/22C06" ; synonym "SPAC4G8.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR019W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "SPAC4G8.14c" ; product "carbohydrate kinase (predicted)" ;
chromosome1 GeneDB CDS 790884 791851 . - . mRNA SPAC16C9.01c ; colour "10" ;
chromosome1 GeneDB CDS 792014 792091 . - . mRNA SPAC16C9.01c ; colour "10" ;
chromosome1 GeneDB CDS 792129 792168 . - . mRNA SPAC16C9.01c ; colour "10" ;
chromosome1 GeneDB misc_feature 791852 791871 . - . misc_feature unknown_617 ; colour "2" ; note "splice branch and acceptor sequence, aattaacacattatt ttcag" ;
chromosome1 GeneDB misc_feature 791913 792022 . + . misc_feature unknown_618 ; note "nominal overlap with SPAC16C9 and cosmid SPAC4G8" ;
chromosome1 GeneDB misc_feature 792008 792013 . - . misc_feature unknown_619 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 792092 792105 . - . misc_feature unknown_620 ; colour "6" ; note "ctaacgaatgcaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 792123 792128 . - . misc_feature unknown_621 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 792167 792233 . - . mRNA SPAC16C9.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16C9.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 792561 792688 . - . mRNA SPAC16C9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16C9.02c" ; systematic_id "SPAC16C9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 792689 793760 . - . mRNA SPAC16C9.02c ; db_xref "SPD:16/16E07" ; systematic_id "SPAC16C9.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0017061; S-methyl-5-thioadenosine phosphorylase activity
GO:0019509; methionine salvage
GO:0005737; cytoplasm" ; gene "SPAC16C9.02c" ; product "S-methyl-5-thioadenosine phosphorylase (predicted)" ; EC_number "2.4.2.- ||| 2.4.2.28" ;
chromosome1 GeneDB CDS 792689 792949 . - . mRNA SPAC16C9.02c ; colour "7" ;
chromosome1 GeneDB CDS 793049 793609 . - . mRNA SPAC16C9.02c ; colour "7" ;
chromosome1 GeneDB CDS 793659 793760 . - . mRNA SPAC16C9.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 792950 792963 . - . misc_feature unknown_622 ; colour "6" ; note "ttaacaaaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 793043 793048 . - . misc_feature unknown_623 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 793610 793625 . - . misc_feature unknown_624 ; colour "6" ; note "ctaacgttttattcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 793653 793658 . - . misc_feature unknown_625 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 793759 793826 . - . mRNA SPAC16C9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16C9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 795038 795083 . + . mRNA SPAC16C9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16C9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 795084 796580 . + . mRNA SPAC16C9.03 ; systematic_id "SPAC16C9.03" ; colour "7" ; gene "SPAC16C9.03 ||| nmd3" ; Alias "nmd3" ; db_xref "SPD:24/24B11" ; GO "GO:0000027; ribosomal large subunit assembly and maintenance
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR170W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "nmd3" ; product "export adaptor Nmd3 (predicted)" ;
chromosome1 GeneDB CDS 795084 796580 . + . mRNA SPAC16C9.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 796581 796740 . + . mRNA SPAC16C9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16C9.03" ; systematic_id "SPAC16C9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 796993 798600 . - . mRNA SPAC16C9.04c ; systematic_id "SPAC16C9.04c" ; colour "7" ; gene "mot2 ||| SPAC16C9.04c" ; Alias "mot2" ; db_xref "SPD:25/25G07" ; GO "GO:0030014; CCR4-NOT complex
GO:0003723; RNA binding
GO:0016564; transcriptional repressor activity
GO:0004842; ubiquitin-protein ligase activity
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006402; mRNA catabolism
GO:0000289; poly(A) tail shortening
GO:0016567; protein ubiquitination
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-CCCH type; cv=protein_family; date=20070102 ||| term=zinc finger protein; date=20070102 ||| term=zf-C3HC4 type (RING finger); cv=protein_family; date=20070102 ||| term=rrm RNA recognition motif; cv=protein_family; date=20070102 ||| term=orthologous to S. cerevisiae YER068W; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=20080528 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mot2" ; product "CCR4-Not complex subunit Mot2 (predicted)" ;
chromosome1 GeneDB CDS 796993 798229 . - . mRNA SPAC16C9.04c ; colour "7" ;
chromosome1 GeneDB CDS 798318 798497 . - . mRNA SPAC16C9.04c ; colour "7" ;
chromosome1 GeneDB CDS 798548 798600 . - . mRNA SPAC16C9.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 798230 798242 . - . misc_feature unknown_626 ; colour "6" ; note "ctaatgtttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 798312 798317 . - . misc_feature unknown_627 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 798498 798513 . - . misc_feature unknown_628 ; colour "6" ; note "ctgacaattgcaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 798542 798547 . - . misc_feature unknown_629 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 798599 798778 . - . mRNA SPAC16C9.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16C9.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 799380 799549 . + . mRNA SPAC16C9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16C9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 799550 800764 . + . mRNA SPAC16C9.05 ; systematic_id "SPAC16C9.05" ; colour "2" ; gene "SPAC16C9.05 ||| cph1" ; Alias "cph1" ; db_xref "SPD:19/19C10" ; GO "GO:0032221; Clr6 histone deacetylase complex II'
GO:0032221; Clr6 histone deacetylase complex II'
GO:0019787; small conjugating protein ligase activity
GO:0006368; RNA elongation from RNA polymersase II promoter
GO:0006338; chromatin remodeling
GO:0016575; histone deacetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YMR075W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "cph1" ; product "Clr6 histone deacetylase associated PHD protein- 1 Cph1" ;
chromosome1 GeneDB CDS 799550 800764 . + . mRNA SPAC16C9.05 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 800765 800981 . + . mRNA SPAC16C9.05 ; ID "SPAC16C9.05" ; db_xref "SPD:19/19C10" ; systematic_id "SPAC16C9.05" ; gene "SPAC16C9.05 ||| cph1" ; note "mRNA from AU012313" ;
chromosome1 GeneDB 3'-UTR 801141 801309 . - . mRNA SPAC16C9.06c ; Alias "upf1" ; ID "SPAC16C9.06c" ; db_xref "SPD:47/47C03" ; systematic_id "SPAC16C9.06c" ; primary_name "upf1" ; gene "upf1 ||| SPAC16C9.06c" ; note "mRNA from AU007333" ;
chromosome1 GeneDB CDS_parts 801310 804087 . - . mRNA SPAC16C9.06c ; systematic_id "SPAC16C9.06c" ; colour "2" ; gene "upf1 ||| SPAC16C9.06c" ; Alias "upf1" ; db_xref "SPD:47/47C03" ; GO "GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0005737; cytoplasm
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding
GO:0006415; translational termination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR080C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16914721; date=20090110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "upf1" ; product "ATP-dependent RNA helicase Upf1" ;
chromosome1 GeneDB CDS 801310 804087 . - . mRNA SPAC16C9.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 804086 804111 . - . mRNA SPAC16C9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16C9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 804662 804995 . + . mRNA SPAC16C9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16C9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 804996 807506 . + . mRNA SPAC16C9.07 ; systematic_id "SPAC16C9.07" ; colour "7" ; gene "ppk5 ||| SPAC16C9.07 ||| SPAC2G11.01 ||| mug189" ; Alias "ppk5" ; db_xref "SPD:29/29B07" ; synonym "SPAC2G11.01 ||| mug189" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=related to S. pombe pom1; date=19700101 ||| term=DYRK subfamily; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation" ; primary_name "ppk5" ; product "serine/threonine protein kinase Ppk5 (predicted)" ;
chromosome1 GeneDB CDS 804996 807506 . + . mRNA SPAC16C9.07 ; colour "7" ;
chromosome1 GeneDB misc_feature 805875 805983 . + . misc_feature unknown_630 ; note "nominal overlap with cosmid SPAC2G11 and cosmid SPAC16C9" ;
chromosome1 GeneDB 3'-UTR 807507 807633 . + . mRNA SPAC16C9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16C9.07" ; systematic_id "SPAC16C9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 807962 808027 . + . mRNA SPAC2G11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 808028 812042 . + . mRNA SPAC2G11.02 ; systematic_id "SPAC2G11.02" ; colour "7" ; gene "urb2 ||| SPAC2G11.02" ; Alias "urb2" ; db_xref "SPD:39/39D12" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "urb2" ; product "ribosome biogenesis protein Urb2 (predicted)" ;
chromosome1 GeneDB CDS 808028 808197 . + . mRNA SPAC2G11.02 ; colour "7" ;
chromosome1 GeneDB CDS 808256 812042 . + . mRNA SPAC2G11.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 808198 808203 . + . misc_feature unknown_631 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 808242 808255 . + . misc_feature unknown_632 ; colour "6" ; note "ttaacaagtattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 811592 812106 . - . mRNA SPAC2G11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2G11.03c" ; systematic_id "SPAC2G11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 812043 812140 . + . mRNA SPAC2G11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2G11.02" ; systematic_id "SPAC2G11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 812107 813970 . - . mRNA SPAC2G11.03c ; systematic_id "SPAC2G11.03c" ; colour "2" ; gene "vps45 ||| SPAC2G11.03c" ; Alias "vps45" ; db_xref "SPD:26/26C08" ; GO "GO:0000149; SNARE binding
GO:0006904; vesicle docking during exocytosis
GO:0006906; vesicle fusion
GO:0006895; Golgi to endosome transport
GO:0006896; Golgi to vacuole transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to valproic acid; allele=vas1-1; db_xref=PMID:17287513; date=20100917 ||| term=orthologous to S. cerevisiae YGL095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps45" ; product "vacuolar sorting protein Vps45" ;
chromosome1 GeneDB CDS 812107 812139 . - . mRNA SPAC2G11.03c ; colour "2" ;
chromosome1 GeneDB CDS 812192 813472 . - . mRNA SPAC2G11.03c ; colour "2" ;
chromosome1 GeneDB CDS 813559 813766 . - . mRNA SPAC2G11.03c ; colour "2" ;
chromosome1 GeneDB CDS 813816 813970 . - . mRNA SPAC2G11.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 812140 812151 . - . misc_feature unknown_633 ; colour "6" ; note "ctaaccatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 812186 812191 . - . misc_feature unknown_634 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 813473 813488 . - . misc_feature unknown_635 ; colour "6" ; note "ctaacacgtattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 813553 813558 . - . misc_feature unknown_636 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 813767 813776 . - . misc_feature unknown_637 ; colour "6" ; note "ttgactttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 813810 813815 . - . misc_feature unknown_638 ; colour "6" ; note "gtacag, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 813969 814177 . - . mRNA SPAC2G11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 814233 814450 . + . mRNA SPAC2G11.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 814451 815356 . + . mRNA SPAC2G11.04 ; db_xref "SPD:12/12E01" ; systematic_id "SPAC2G11.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC2G11.04" ; product "RNA-binding protein, G-patch type (predicted)" ;
chromosome1 GeneDB CDS 814451 815356 . + . mRNA SPAC2G11.04 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 815442 815514 . - . mRNA SPAC2G11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2G11.05c" ; systematic_id "SPAC2G11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 815515 817620 . - . mRNA SPAC2G11.05c ; db_xref "SPD:46/46E08" ; systematic_id "SPAC2G11.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR275C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0030437; sporulation (sensu Fungi)
GO:0005768; endosome
GO:0009268; response to pH
GO:0016485; protein processing" ; gene "SPAC2G11.05c" ; product "BRO1 domain protein (predicted)" ;
chromosome1 GeneDB CDS 815515 817620 . - . mRNA SPAC2G11.05c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 817619 817916 . - . mRNA SPAC2G11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 818025 818116 . + . mRNA SPAC2G11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 818117 819650 . + . mRNA SPAC2G11.06 ; systematic_id "SPAC2G11.06" ; colour "7" ; gene "vps4 ||| SPAC2G11.06" ; Alias "vps4" ; db_xref "SPD:24/24H04" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport
GO:0045053; protein retention in Golgi" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YPR173C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps4" ; product "AAA family ATPase Vps4 (predicted)" ;
chromosome1 GeneDB CDS 818117 818140 . + . mRNA SPAC2G11.06 ; colour "7" ;
chromosome1 GeneDB CDS 818207 818318 . + . mRNA SPAC2G11.06 ; colour "7" ;
chromosome1 GeneDB CDS 818429 818915 . + . mRNA SPAC2G11.06 ; colour "7" ;
chromosome1 GeneDB CDS 818975 819650 . + . mRNA SPAC2G11.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 818141 818146 . + . misc_feature unknown_639 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 818194 818206 . + . misc_feature unknown_640 ; colour "6" ; note "ctaactactgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 818319 818324 . + . misc_feature unknown_641 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 818417 818428 . + . misc_feature unknown_642 ; colour "6" ; note "ctaatatttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 818916 818921 . + . misc_feature unknown_643 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 818963 818974 . + . misc_feature unknown_644 ; colour "6" ; note "ctaacattatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 819651 819675 . + . mRNA SPAC2G11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2G11.06" ; systematic_id "SPAC2G11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 819787 820162 . - . mRNA SPAC2G11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2G11.07c" ; systematic_id "SPAC2G11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 820163 821704 . - . mRNA SPAC2G11.07c ; systematic_id "SPAC2G11.07c" ; colour "2" ; gene "ptc3 ||| SPAC2G11.07c" ; note "protein phosphatase 2c homolog 3" ; Alias "ptc3" ; db_xref "SPD:25/25A02" ; GO "GO:0006470; protein amino acid dephosphorylation
GO:0004722; protein phosphatase type 2C activity
GO:0000173; inactivation of MAPK activity during osmolarity sensing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER089C and YBL056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Protein Phosphatase 2C homolog; date=20101124 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:7859738; date=20101126" ; primary_name "ptc3" ; EC_number "3.1.3.16" ;
chromosome1 GeneDB CDS 820163 821005 . - . mRNA SPAC2G11.07c ; colour "2" ;
chromosome1 GeneDB CDS 821045 821118 . - . mRNA SPAC2G11.07c ; colour "2" ;
chromosome1 GeneDB CDS 821377 821704 . - . mRNA SPAC2G11.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 821006 821017 . - . misc_feature unknown_645 ; colour "6" ; note "ctaattgtgtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 821006 821044 . - . intron SPAC2G11.07c ; Alias "ptc3" ; db_xref "EMBL:L34882 ||| SPD:25/25A02" ; systematic_id "SPAC2G11.07c" ; primary_name "ptc3" ; gene "ptc3 ||| SPAC2G11.07c" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 821039 821044 . - . misc_feature unknown_646 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 821119 821134 . - . misc_feature unknown_647 ; colour "6" ; note "ctaactattttgacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 821119 821376 . - . intron SPAC2G11.07c ; Alias "ptc3" ; db_xref "EMBL:L34882 ||| SPD:25/25A02" ; systematic_id "SPAC2G11.07c" ; primary_name "ptc3" ; gene "ptc3 ||| SPAC2G11.07c" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 821371 821376 . - . misc_feature unknown_648 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 821703 821766 . - . mRNA SPAC2G11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 822262 822331 . - . mRNA SPAC2G11.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2G11.08c" ; systematic_id "SPAC2G11.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 822332 822849 . - . mRNA SPAC2G11.08c ; systematic_id "SPAC2G11.08c" ; colour "2" ; gene "smn1 ||| yab8 ||| SPAC2G11.08c" ; Alias "smn1" ; db_xref "SPD:05/05B03" ; synonym "yab8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SMN family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10749974; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, motor neurone disease; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, neurological disorders; date=20091123" ; GO "GO:0000387; spliceosomal snRNP biogenesis
GO:0005634; nucleus" ; primary_name "smn1" ; product "SMN family protein Smn1" ;
chromosome1 GeneDB CDS 822332 822429 . - . mRNA SPAC2G11.08c ; colour "2" ;
chromosome1 GeneDB CDS 822489 822849 . - . mRNA SPAC2G11.08c ; colour "2" ;
chromosome1 GeneDB misc_feature 822430 822446 . - . misc_feature unknown_649 ; colour "6" ; note "ttaacataatgatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 822483 822488 . - . misc_feature unknown_650 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 822848 822923 . - . mRNA SPAC2G11.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 823527 823754 . + . mRNA SPAC2G11.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 823755 826229 . + . mRNA SPAC2G11.09 ; db_xref "SPD:28/28H07" ; systematic_id "SPAC2G11.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR241W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC2G11.09" ; product "DUF221 family protein" ;
chromosome1 GeneDB CDS 823755 823784 . + . mRNA SPAC2G11.09 ; colour "10" ;
chromosome1 GeneDB CDS 823869 826229 . + . mRNA SPAC2G11.09 ; colour "10" ;
chromosome1 GeneDB misc_feature 823785 823790 . + . misc_feature unknown_651 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 823856 823868 . + . misc_feature unknown_652 ; colour "6" ; note "ttaattcctacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 826230 826330 . + . mRNA SPAC2G11.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2G11.09" ; systematic_id "SPAC2G11.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 826538 828011 . - . mRNA SPAC2G11.10c ; db_xref "SPD:23/23G06" ; systematic_id "SPAC2G11.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0042292; URM1 activating enzyme activity
GO:0034599; cellular response to oxidative stress
GO:0005737; cytoplasm
GO:0032447; protein urmylation" ; gene "SPAC2G11.10c" ; product "URM1 activating enzyme (predicted)" ;
chromosome1 GeneDB CDS 826538 827420 . - . mRNA SPAC2G11.10c ; colour "7" ;
chromosome1 GeneDB CDS 827465 827678 . - . mRNA SPAC2G11.10c ; colour "7" ;
chromosome1 GeneDB CDS 827903 828011 . - . mRNA SPAC2G11.10c ; colour "7" ;
chromosome1 GeneDB misc_feature 827421 827431 . - . misc_feature unknown_653 ; colour "6" ; note "ctaacgcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 827459 827464 . - . misc_feature unknown_654 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 827679 827689 . - . misc_feature unknown_655 ; colour "6" ; note "ctaaccaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 827897 827902 . - . misc_feature unknown_656 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 828010 828090 . - . mRNA SPAC2G11.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 828640 829213 . - . mRNA SPAC2G11.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2G11.11c" ; systematic_id "SPAC2G11.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 829214 831499 . - . mRNA SPAC2G11.11c ; systematic_id "SPAC2G11.11c" ; colour "7" ; gene "prh1 ||| SPAC2G11.11c" ; Alias "prh1" ; db_xref "SPD:40/40H06" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YKL078W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "prh1" ; product "ATP-dependent RNA helicase Prh1 (predicted)" ;
chromosome1 GeneDB CDS 829214 829312 . - . mRNA SPAC2G11.11c ; colour "7" ;
chromosome1 GeneDB CDS 829356 829424 . - . mRNA SPAC2G11.11c ; colour "7" ;
chromosome1 GeneDB CDS 829508 831499 . - . mRNA SPAC2G11.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 829313 829324 . - . misc_feature unknown_657 ; colour "6" ; note "ctaatcattcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 829313 829355 . - . intron SPAC2G11.11c ; Alias "prh1" ; db_xref "SPD:40/40H06" ; systematic_id "SPAC2G11.11c" ; primary_name "prh1" ; gene "prh1 ||| SPAC2G11.11c" ; note "confirmed EMBL:D13249" ;
chromosome1 GeneDB misc_feature 829350 829355 . - . misc_feature unknown_658 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 829425 829438 . - . misc_feature unknown_659 ; colour "6" ; note "ctaatccaaattag, splice branch and acceptor" ;
chromosome1 GeneDB intron 829425 829507 . - . intron SPAC2G11.11c ; Alias "prh1" ; db_xref "SPD:40/40H06" ; systematic_id "SPAC2G11.11c" ; primary_name "prh1" ; gene "prh1 ||| SPAC2G11.11c" ; note "confirmed EMBL:D13249" ;
chromosome1 GeneDB misc_feature 829502 829507 . - . misc_feature unknown_660 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 831498 831555 . - . mRNA SPAC2G11.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 831940 832026 . + . mRNA SPAC2G11.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 832027 836013 . + . mRNA SPAC2G11.12 ; systematic_id "SPAC2G11.12" ; colour "2" ; gene "rqh1 ||| hus2 ||| rad12 ||| rec9 ||| SPAC2G11.12" ; Alias "rqh1" ; db_xref "SPD:39/39D09" ; synonym "hus2 ||| rad12 ||| rec9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9184215; date=19700101 ||| term=phenotype, spindle checkpoint activated; cv=phenotype; db_xref=PMID:16303848; date=20080104 ||| term=phenotype, sensitive to HU; cv=phenotype; date=20090729 ||| term=phenotype, DNA damage checkpoint defects, S-phase; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:9184215; date=20101004 ||| term=disease associated, Bloom's syndrome; date=20060724 ||| term=disease associated, cancer; date=20060724 ||| term=RecQ family; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YMR190C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Hydroxy Urea Sensitive; cv=name_description; date=20090729 ||| term=human BLM and WRN ortholog; date=20100217" ; GO "GO:0031422; RecQ helicase-Topo III complex
GO:0043596; nuclear replication fork
GO:0005524; ATP binding
GO:0043140; ATP-dependent 3' to 5' DNA helicase activity
GO:0003677; DNA binding
GO:0005515; protein binding
GO:0006268; DNA unwinding during replication
GO:0009650; UV protection
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0031573; intra-S DNA damage checkpoint
; maintenance of rDNA
GO:0043007; maintenance of rDNA
GO:0007131; meiotic recombination
GO:0045950; negative regulation of mitotic recombination
GO:0000725; recombinational repair
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0034065; replication fork processing at rDNA locus
GO:0071140; resolution of mitotic recombination intermediates
GO:0006974; response to DNA damage stimulus
GO:0000723; telomere maintenance
GO:0000723; telomere maintenance" ; primary_name "rqh1" ; product "RecQ type DNA helicase Rqh1" ;
chromosome1 GeneDB CDS 832027 836013 . + . mRNA SPAC2G11.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 836014 836067 . + . mRNA SPAC2G11.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2G11.12" ; systematic_id "SPAC2G11.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 836285 836382 . + . mRNA SPAC2G11.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 836383 837972 . + . mRNA SPAC2G11.13 ; systematic_id "SPAC2G11.13" ; colour "2" ; gene "atg22 ||| SPAC2G11.13" ; Alias "atg22" ; db_xref "SPD:25/25F02" ; GO "GO:0071627; integral to fungal-type vacuolar membrane
GO:0034639; amino acid efflux transmembrane transporter activity
GO:0032974; amino acid export from vacuole
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCL038C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=phenotype, sporulation defects; qualifier=triple_mutant; allele=SPAC3H1.09|SPBC16H5.07|SPAC2G11. 13|leucine_auxotroph; db_xref=PMID:19778961; date=20091126" ; primary_name "atg22" ; product "vacuolar amino acid efflux transporter Atg22" ;
chromosome1 GeneDB CDS 836383 837972 . + . mRNA SPAC2G11.13 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 837973 838102 . + . mRNA SPAC2G11.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2G11.13" ; systematic_id "SPAC2G11.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 838267 838319 . + . mRNA SPAC2G11.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2G11.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 838320 841387 . + . mRNA SPAC2G11.14 ; systematic_id "SPAC2G11.14" ; colour "2" ; gene "taf111 ||| taf130 ||| SPAC2G11.14" ; Alias "taf111" ; db_xref "SPD:29/29H11" ; synonym "taf1 ||| taf130 ||| kat4" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=orthologous to S. cerevisiae YGR274C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0005669; transcription factor TFIID complex
GO:0005515; protein binding" ; primary_name "taf111" ; product "transcription factor TFIID complex subunit Taf111" ;
chromosome1 GeneDB CDS 838320 838382 . + . mRNA SPAC2G11.14 ; colour "2" ;
chromosome1 GeneDB CDS 838425 838995 . + . mRNA SPAC2G11.14 ; colour "2" ;
chromosome1 GeneDB CDS 839044 839192 . + . mRNA SPAC2G11.14 ; colour "2" ;
chromosome1 GeneDB CDS 839231 841387 . + . mRNA SPAC2G11.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 838383 838388 . + . misc_feature unknown_661 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 838412 838424 . + . misc_feature unknown_662 ; colour "6" ; note "ctaacgaatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 838996 839001 . + . misc_feature unknown_663 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 839031 839043 . + . misc_feature unknown_664 ; colour "6" ; note "ctgacatgttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 839193 839198 . + . misc_feature unknown_665 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 839220 839230 . + . misc_feature unknown_666 ; colour "6" ; note "ctaaccgaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 841388 841456 . + . mRNA SPAC2G11.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2G11.14" ; systematic_id "SPAC2G11.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 841471 841571 . - . mRNA SPAC2G11.15c ; ID "SPAC2G11.15c" ; db_xref "SPD:12/12G08" ; systematic_id "SPAC2G11.15c" ; gene "SPAC2G11.15c ||| SPAC521.01c ||| tgs1" ; note "mRNA from SPD174" ;
chromosome1 GeneDB CDS_parts 841572 842490 . - . mRNA SPAC2G11.15c ; systematic_id "SPAC2G11.15c" ; colour "2" ; gene "SPAC2G11.15c ||| SPAC521.01c ||| tgs1" ; Alias "tgs1" ; db_xref "SPD:12/12G08" ; synonym "SPAC521.01c" ; controlled_curation "term=orthologous to S. cerevisiae YPL157W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005730; nucleolus
GO:0008990; rRNA (guanine-N2-)-methyltransferase activity
GO:0006387; snRNA capping
GO:0031167; rRNA methylation" ; primary_name "tgs1" ; product "RNA methyltransferase Tgs1 (predicted)" ;
chromosome1 GeneDB CDS 841572 841859 . - . mRNA SPAC2G11.15c ; colour "2" ;
chromosome1 GeneDB CDS 841908 842053 . - . mRNA SPAC2G11.15c ; colour "2" ;
chromosome1 GeneDB CDS 842126 842241 . - . mRNA SPAC2G11.15c ; colour "2" ;
chromosome1 GeneDB CDS 842321 842490 . - . mRNA SPAC2G11.15c ; colour "2" ;
chromosome1 GeneDB misc_feature 841860 841876 . - . misc_feature unknown_667 ; colour "6" ; note "ttaacaatattttctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 841860 841907 . - . intron SPAC2G11.15c ; db_xref "SPD:12/12G08" ; systematic_id "SPAC2G11.15c" ; gene "SPAC2G11.15c ||| SPAC521.01c ||| tgs1" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 841902 841907 . - . misc_feature unknown_668 ; colour "6" ; note "gtatag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 841934 842036 . + . misc_feature unknown_669 ; note "nominal overlap with cosmid SPAC2G11, EM:Z54354 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 842054 842071 . - . misc_feature unknown_670 ; colour "6" ; note "ttaacgcttttgtttcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 842054 842125 . - . intron SPAC2G11.15c ; db_xref "SPD:12/12G08" ; systematic_id "SPAC2G11.15c" ; gene "SPAC2G11.15c ||| SPAC521.01c ||| tgs1" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 842120 842125 . - . misc_feature unknown_671 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 842242 842259 . - . misc_feature unknown_672 ; colour "6" ; note "ctgacaaattataattag, splice branch and acceptor" ;
chromosome1 GeneDB intron 842242 842320 . - . intron SPAC2G11.15c ; db_xref "SPD:12/12G08" ; systematic_id "SPAC2G11.15c" ; gene "SPAC2G11.15c ||| SPAC521.01c ||| tgs1" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 842315 842320 . - . misc_feature unknown_673 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 842491 842624 . - . mRNA SPAC2G11.15c ; ID "SPAC2G11.15c" ; systematic_id "SPAC2G11.15c" ; gene "SPAC2G11.15c ||| SPAC521.01c ||| tgs1" ; note "mRNA from SPD174" ;
chromosome1 GeneDB CDS_parts 843233 844084 . + . mRNA SPAC521.02 ; db_xref "SPD:43/43E02" ; systematic_id "SPAC521.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR134W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0016925; protein sumoylation
GO:0006974; response to DNA damage stimulus
GO:0008270; zinc ion binding" ; gene "SPAC521.02" ; product "WLM domain protein" ;
chromosome1 GeneDB CDS 843233 844084 . + . mRNA SPAC521.02 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 844085 844097 . + . mRNA SPAC521.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC521.02" ; systematic_id "SPAC521.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 844948 845144 . + . mRNA SPAC521.03 ; ID "SPAC521.03" ; systematic_id "SPAC521.03" ; gene "SPAC521.03" ; note "mRNA from AU008786" ;
chromosome1 GeneDB CDS_parts 845145 845924 . + . mRNA SPAC521.03 ; db_xref "SPD:43/43B12" ; systematic_id "SPAC521.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR226C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPAC521.03" ; product "short chain dehydrogenase (predicted)" ;
chromosome1 GeneDB CDS 845145 845924 . + . mRNA SPAC521.03 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 845925 846142 . + . mRNA SPAC521.03 ; ID "SPAC521.03" ; db_xref "SPD:43/43B12" ; systematic_id "SPAC521.03" ; gene "SPAC521.03" ; note "mRNA from AU010874" ;
chromosome1 GeneDB CDS_parts 846331 848976 . - . mRNA SPAC521.04c ; db_xref "SPD:38/38G04" ; systematic_id "SPAC521.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL321W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0006812; cation transport
GO:0016021; integral to membrane
GO:0008324; cation transporter activity" ; gene "SPAC521.04c" ; product "calcium permease (predicted)" ;
chromosome1 GeneDB CDS 846331 848976 . - . mRNA SPAC521.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 849486 849519 . + . mRNA SPAC521.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC521.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 849520 850122 . + . mRNA SPAC521.05 ; systematic_id "SPAC521.05" ; colour "7" ; gene "rps802 ||| rps8-2 ||| SPAC521.05" ; Alias "rps802" ; db_xref "SPD:06/06F11" ; synonym "rps8-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL072C and YER102W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps802" ; product "40S ribosomal protein S8 (predicted)" ;
chromosome1 GeneDB CDS 849520 850122 . + . mRNA SPAC521.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 850123 850146 . + . mRNA SPAC521.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC521.05" ; systematic_id "SPAC521.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 850641 850675 . + . mRNA SPAC23G3.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23G3.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 850676 854346 . + . mRNA SPAC23G3.01 ; systematic_id "SPAC23G3.01" ; colour "2" ; gene "rpb2 ||| SPAC521.06 ||| SPAC23G3.01" ; Alias "rpb2" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:39/39B12" ; synonym "SPAC521.06" ; GO "GO:0005665; DNA-directed RNA polymerase II, core complex
GO:0000775; chromosome, pericentric region
GO:0003677; DNA binding
GO:0003899; DNA-directed RNA polymerase activity
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031048; small RNA-mediated chromatin silencing
GO:0006366; transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR151C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpb2" ; product "RNA polymerase II complex subunit Rpb2" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB CDS 850676 850691 . + . mRNA SPAC23G3.01 ; colour "2" ;
chromosome1 GeneDB CDS 850730 854346 . + . mRNA SPAC23G3.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 850692 850697 . + . misc_feature unknown_674 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 850715 850729 . + . misc_feature unknown_675 ; colour "6" ; note "ttaacaccataatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 852790 852897 . + . misc_feature unknown_676 ; note "nominal overlap with cosmid SPAC23G3, EM:AL138854 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 854347 854385 . + . mRNA SPAC23G3.01 ; Alias "rpb2" ; ID "SPAC23G3.01" ; db_xref "SPD:39/39B12" ; systematic_id "SPAC23G3.01" ; primary_name "rpb2" ; gene "rpb2 ||| SPAC521.06 ||| SPAC23G3.01" ; note "mRNA from AU011612" ;
chromosome1 GeneDB 3'-UTR 854453 854522 . - . mRNA SPAC23G3.02c ; Alias "sib1" ; ID "SPAC23G3.02c" ; db_xref "SPD:50/50A04" ; systematic_id "SPAC23G3.02c" ; primary_name "sib1" ; gene "sib1 ||| SPAC23G3.02c" ; note "mRNA from AU006993" ;
chromosome1 GeneDB CDS_parts 854523 869527 . - . mRNA SPAC23G3.02c ; systematic_id "SPAC23G3.02c" ; colour "2" ; gene "sib1 ||| SPAC23G3.02c" ; note "possible FRAMESHIFT; base-check of problem region in progress" ; Alias "sib1" ; db_xref "SPD:50/50A04" ; GO "GO:0016879; ligase activity, forming carbon- nitrogen bonds
GO:0031177; phosphopantetheine binding
GO:0031169; ferrichrome biosynthesis
GO:0006880; intracellular sequestering of iron ion
GO:0033214; iron assimilation by chelation and transport
GO:0006879; iron ion homeostasis
GO:0019184; nonribosomal peptide biosynthesis
GO:0019290; siderophore biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, phosphopantetheine attachment site; db_xref=PMID:15689108; cv=pt_mod; date=20050207 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=genome organization, divergently orientated to functionally related gene; cv=genome_org; db_xref=PMID:15689108; date=20061027 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=gene expression, co-transcribed with divergently orientated functionally related gene; db_xref=PMID:15689108; date=20061027" ; primary_name "sib1" ; product "ferrichrome synthetase Sib1" ;
chromosome1 GeneDB CDS 854523 862924 . - . mRNA SPAC23G3.02c ; colour "2" ;
chromosome1 GeneDB CDS 863155 869527 . - . mRNA SPAC23G3.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 862925 862940 . - . misc_feature unknown_677 ; colour "6" ; note "ttgactattgagacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 862934 862987 . + . misc_feature unknown_678 ; note "poor quality region, gone for PCR verification, may have caused frameshift in SPAC23G3.02c, which may result in a single ORF for this gene" ;
chromosome1 GeneDB misc_feature 863149 863154 . - . misc_feature unknown_679 ; colour "6" ; note "gtagag, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 869526 869670 . - . mRNA SPAC23G3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23G3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 870772 871024 . + . mRNA SPAC23G3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23G3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 871025 872320 . + . mRNA SPAC23G3.03 ; systematic_id "SPAC23G3.03" ; colour "2" ; gene "sib2 ||| SPAC23G3.03" ; Alias "sib2" ; db_xref "SPD:32/32G08" ; GO "GO:0031169; ferrichrome biosynthesis
GO:0031172; ornithine N5-monooxygenase activity
GO:0006879; iron ion homeostasis
GO:0050660; FAD binding
GO:0050661; NADP binding
GO:0033214; iron assimilation by chelation and transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=genome organization, divergently orientated to functionally related gene; cv=genome_org; db_xref=PMID:15689108; date=20061027 ||| term=gene expression, co-transcribed with divergently orientated functionally related gene; db_xref=PMID:15689108; date=20061027 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=species distribution, conserved in Eukaryotes; date=20070115" ; primary_name "sib2" ; product "ornithine N5 monooxygenase (predicted)" ; EC_number "1.14.13.-" ;
chromosome1 GeneDB CDS 871025 872320 . + . mRNA SPAC23G3.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 872321 872695 . + . mRNA SPAC23G3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23G3.03" ; systematic_id "SPAC23G3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 872973 873166 . + . mRNA SPAC23G3.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23G3.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 873167 873751 . + . mRNA SPAC23G3.04 ; systematic_id "SPAC23G3.04" ; colour "2" ; gene "ies4 ||| SPAC23G3.04" ; Alias "ies4" ; db_xref "SPD:31/31E12" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR189W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "ies4" ; product "Ino80 complex subunit Ies4" ;
chromosome1 GeneDB CDS 873167 873751 . + . mRNA SPAC23G3.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 873752 874182 . + . mRNA SPAC23G3.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23G3.04" ; systematic_id "SPAC23G3.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 874293 874531 . - . mRNA SPAC23G3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23G3.05c" ; systematic_id "SPAC23G3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 874532 875563 . - . mRNA SPAC23G3.05c ; db_xref "SPD:32/32C12" ; systematic_id "SPAC23G3.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR301W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0030010; establishment of cell polarity (sensu Fungi)" ; gene "SPAC23G3.05c" ; product "regulator of G-protein signaling (RGS) domain (predicted)" ;
chromosome1 GeneDB CDS 874532 875563 . - . mRNA SPAC23G3.05c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 875562 875610 . - . mRNA SPAC23G3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23G3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 876930 876946 . + . mRNA SPAC23G3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23G3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 876947 878582 . + . mRNA SPAC23G3.06 ; db_xref "SPD:33/33C07" ; systematic_id "SPAC23G3.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR310C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0006364; rRNA processing
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding" ; gene "SPAC23G3.06" ; product "U3 snoRNP protein Nop58 (predicted)" ;
chromosome1 GeneDB CDS 876947 876962 . + . mRNA SPAC23G3.06 ; colour "7" ;
chromosome1 GeneDB CDS 877004 877106 . + . mRNA SPAC23G3.06 ; colour "7" ;
chromosome1 GeneDB CDS 877175 878582 . + . mRNA SPAC23G3.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 876963 876968 . + . misc_feature unknown_680 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 876989 877003 . + . misc_feature unknown_681 ; colour "6" ; note "ctaacaacataatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 877107 877112 . + . misc_feature unknown_682 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 877159 877174 . + . misc_feature unknown_683 ; colour "6" ; note "ctaacactgaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 878583 878856 . + . mRNA SPAC23G3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23G3.06" ; systematic_id "SPAC23G3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 879147 879213 . - . mRNA SPAC23G3.07c ; Alias "snf30" ; ID "SPAC23G3.07c" ; db_xref "SPD:32/32B10" ; systematic_id "SPAC23G3.07c" ; primary_name "snf30" ; gene "snf30 ||| SPAC23G3.07c" ; note "mRNA from AU007699" ;
chromosome1 GeneDB CDS_parts 879214 880189 . - . mRNA SPAC23G3.07c ; systematic_id "SPAC23G3.07c" ; colour "2" ; gene "snf30 ||| SPAC23G3.07c" ; note "candidate ortholog for S. cerevisiae YDR073W (SNF11)" ; Alias "snf30" ; db_xref "SPD:32/32B10" ; GO "GO:0000790; nuclear chromatin
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0016514; SWI/SNF complex
GO:0010551; regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=20071106 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "snf30" ; product "SWI/SNF complex subunit Snf30" ; reserved_name "snf30" ;
chromosome1 GeneDB CDS 879214 879835 . - . mRNA SPAC23G3.07c ; colour "2" ;
chromosome1 GeneDB CDS 879987 880189 . - . mRNA SPAC23G3.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 879836 879851 . - . misc_feature unknown_684 ; colour "6" ; note "ctaattcatttactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 879981 879986 . - . misc_feature unknown_685 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 880188 880452 . - . mRNA SPAC23G3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23G3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 880727 881022 . - . mRNA SPAC23G3.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23G3.08c" ; systematic_id "SPAC23G3.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 881023 883650 . - . mRNA SPAC23G3.08c ; systematic_id "SPAC23G3.08c" ; colour "2" ; gene "SPAC23G3.08c ||| ubp7" ; db_xref "SPD:33/33H05" ; Alias "ubp7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL156W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human USP45 ortholog; db_xref=PMID:20838651; date=20101001" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0005737; cytoplasm
GO:0016579; protein deubiquitination" ; primary_name "ubp7" ; product "ubiquitin C-terminal hydrolase Ubp7" ;
chromosome1 GeneDB CDS 881023 883650 . - . mRNA SPAC23G3.08c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 883649 884190 . - . mRNA SPAC23G3.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23G3.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 884410 884444 . + . mRNA SPAC23G3.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23G3.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 884445 885542 . + . mRNA SPAC23G3.09 ; systematic_id "SPAC23G3.09" ; colour "7" ; gene "taf4 ||| SPAC23G3.09" ; Alias "taf4" ; db_xref "SPD:32/32E05" ; GO "GO:0005669; transcription factor TFIID complex
GO:0003702; RNA polymerase II transcription factor activity
GO:0016986; transcription initiation factor activity
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0051123; transcriptional preinitiation complex assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YMR005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "taf4" ; product "transcription factor TFIID complex subunit Taf4 (predicted)" ;
chromosome1 GeneDB CDS 884445 885542 . + . mRNA SPAC23G3.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 885543 885675 . + . mRNA SPAC23G3.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23G3.09" ; systematic_id "SPAC23G3.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 885787 885894 . - . mRNA SPAC23G3.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23G3.10c" ; systematic_id "SPAC23G3.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 885895 887172 . - . mRNA SPAC23G3.10c ; systematic_id "SPAC23G3.10c" ; colour "2" ; gene "ssr3 ||| SPAC23G3.10c" ; Alias "ssr3" ; db_xref "SPD:32/32G05" ; GO "GO:0000790; nuclear chromatin
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0016514; SWI/SNF complex
GO:0016586; RSC complex
GO:0010551; regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Swi/Snf RSC; cv=name_description; date=20061009 ||| term=orthologous to S. cerevisiae YNR023W and YCR052W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ssr3" ; product "SWI/SNF and RSC complex subunit Ssr3" ;
chromosome1 GeneDB CDS 885895 887172 . - . mRNA SPAC23G3.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 887171 887216 . - . mRNA SPAC23G3.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23G3.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 887656 887660 . + . mRNA SPAC23G3.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23G3.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 887661 889033 . + . mRNA SPAC23G3.11 ; systematic_id "SPAC23G3.11" ; colour "7" ; gene "rpn6 ||| SPAC23G3.11" ; Alias "rpn6" ; db_xref "SPD:32/32H08" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpn6" ; product "19S proteasome regulatory subunit Rpn6 (predicted)" ;
chromosome1 GeneDB CDS 887661 887836 . + . mRNA SPAC23G3.11 ; colour "7" ;
chromosome1 GeneDB CDS 887899 887981 . + . mRNA SPAC23G3.11 ; colour "7" ;
chromosome1 GeneDB CDS 888027 889033 . + . mRNA SPAC23G3.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 887837 887842 . + . misc_feature unknown_686 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 887880 887898 . + . misc_feature unknown_687 ; colour "6" ; note "ctaacatttatttctctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 887982 887987 . + . misc_feature unknown_688 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 888012 888026 . + . misc_feature unknown_689 ; colour "6" ; note "ctaacaccattttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 889046 889129 . - . mRNA SPAC23G3.12c ; ID "SPAC23G3.12c" ; db_xref "SPD:34/34A03 ||| EMBL:AB010900" ; systematic_id "SPAC23G3.12c" ; gene "SPAC23G3.12c" ;
chromosome1 GeneDB CDS_parts 889130 892120 . - . mRNA SPAC23G3.12c ; db_xref "SPD:34/34A03" ; systematic_id "SPAC23G3.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PDZ domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL123W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; GO "GO:0051603; proteolysis involved in cellular protein catabolic process
GO:0004252; serine-type endopeptidase activity
GO:0006629; lipid metabolism" ; gene "SPAC23G3.12c" ; product "serine protease (predicted)" ;
chromosome1 GeneDB CDS 889130 892120 . - . mRNA SPAC23G3.12c ; colour "10" ;
chromosome1 GeneDB 3'-UTR 893375 893718 . - . mRNA SPAC22H12.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22H12.01c" ; systematic_id "SPAC22H12.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 893719 894423 . - . mRNA SPAC22H12.01c ; systematic_id "SPAC22H12.01c" ; colour "8" ; gene "SPAC23G3.13c ||| SPAC22H12.01c ||| mug35" ; Alias "mug35" ; db_xref "SPD:31/31H01" ; synonym "SPAC23G3.13c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug35" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 893719 894423 . - . mRNA SPAC22H12.01c ; colour "8" ;
chromosome1 GeneDB misc_feature 893872 893970 . + . misc_feature unknown_690 ; note "nominal overlap with cosmid SPAC22H12 and cosmid SPAC23G3" ;
chromosome1 GeneDB 5'-UTR 894422 894476 . - . mRNA SPAC22H12.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22H12.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 895026 895365 . + . mRNA SPAC22H12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22H12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 895366 896401 . + . mRNA SPAC22H12.02 ; systematic_id "SPAC22H12.02" ; colour "2" ; gene "tfg3 ||| taf14 ||| SPAC22H12.02" ; Alias "tfg3" ; db_xref "SPD:15/15F12" ; synonym "taf14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL129W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, sensitive to cold; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human YEATS4 and MLLT3 ortholog; date=20100203 ||| term=disease associated, cancer; date=20100218 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100218" ; GO "GO:0016514; SWI/SNF complex
GO:0000790; nuclear chromatin
GO:0005669; transcription factor TFIID complex
GO:0005674; transcription factor TFIIF complex
GO:0017025; TATA-binding protein binding
GO:0016251; general RNA polymerase II transcription factor activity
GO:0005515; protein binding
GO:0034605; cellular response to heat
GO:0006338; chromatin remodeling
GO:0006367; transcription initiation from RNA polymerase II promoter" ; primary_name "tfg3" ; product "transcription factor TFIIF complex subunit Tfg3" ;
chromosome1 GeneDB CDS 895366 895407 . + . mRNA SPAC22H12.02 ; colour "2" ;
chromosome1 GeneDB CDS 895597 895765 . + . mRNA SPAC22H12.02 ; colour "2" ;
chromosome1 GeneDB CDS 895823 895974 . + . mRNA SPAC22H12.02 ; colour "2" ;
chromosome1 GeneDB CDS 896039 896401 . + . mRNA SPAC22H12.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 895408 895413 . + . misc_feature unknown_691 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 895583 895596 . + . misc_feature unknown_692 ; colour "6" ; note "cttacaatatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 895766 895771 . + . misc_feature unknown_693 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 895810 895822 . + . misc_feature unknown_694 ; colour "6" ; note "ctaatttttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 895975 895980 . + . misc_feature unknown_695 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 896024 896038 . + . misc_feature unknown_696 ; colour "6" ; note "ctaactgagtcttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 896402 896456 . + . mRNA SPAC22H12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22H12.02" ; systematic_id "SPAC22H12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 896785 896876 . + . mRNA SPAC22H12.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22H12.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 896877 897767 . + . mRNA SPAC22H12.03 ; db_xref "SPD:12/12A12" ; systematic_id "SPAC22H12.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=abhydrolase family; date=19700101 ||| term=orthologous to S. cerevisiae YGR031W and YGR015C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0008474; palmitoyl-(protein) hydrolase activity
GO:0006631; fatty acid metabolic process" ; gene "SPAC22H12.03" ; product "mitochondrial hydrolase (predicted)" ;
chromosome1 GeneDB CDS 896877 897163 . + . mRNA SPAC22H12.03 ; colour "7" ;
chromosome1 GeneDB CDS 897242 897767 . + . mRNA SPAC22H12.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 897164 897169 . + . misc_feature unknown_697 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 897224 897241 . + . misc_feature unknown_698 ; colour "6" ; note "ctaactttgctgacttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 898045 898190 . - . mRNA SPAC22H12.04c ; Alias "rps102" ; ID "SPAC22H12.04c" ; db_xref "SPD:31/31H09" ; systematic_id "SPAC22H12.04c" ; primary_name "rps102" ; gene "rps102 ||| rps1-2 ||| rps3a-2 ||| SPAC22H12.04c" ; note "mRNA from AF127914" ;
chromosome1 GeneDB CDS_parts 898191 898949 . - . mRNA SPAC22H12.04c ; systematic_id "SPAC22H12.04c" ; colour "7" ; gene "rps102 ||| rps1-2 ||| rps3a-2 ||| SPAC22H12.04c" ; Alias "rps102" ; db_xref "SPD:31/31H09" ; synonym "rps1-2 ||| rps3a-2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR441C and YML063W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps102" ; product "40S ribosomal protein S3a (predicted)" ;
chromosome1 GeneDB CDS 898191 898949 . - . mRNA SPAC22H12.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 898950 898994 . - . mRNA SPAC22H12.04c ; Alias "rps102" ; ID "SPAC22H12.04c" ; systematic_id "SPAC22H12.04c" ; primary_name "rps102" ; gene "rps102 ||| rps1-2 ||| rps3a-2 ||| SPAC22H12.04c" ; note "mRNA from AF127914" ;
chromosome1 GeneDB 3'-UTR 899536 899566 . - . mRNA SPAC22H12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22H12.05c" ; systematic_id "SPAC22H12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 899567 901753 . - . mRNA SPAC22H12.05c ; db_xref "SPD:46/46F07" ; systematic_id "SPAC22H12.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR001C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPAC22H12.05c" ; product "fasciclin domain protein" ;
chromosome1 GeneDB CDS 899567 901753 . - . mRNA SPAC22H12.05c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 901752 901902 . - . mRNA SPAC22H12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22H12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 902832 902938 . + . misc_feature unknown_699 ; note "nominal overlap with small insert clone SPAPYUL23 and cosmid SPAC22H12" ;
chromosome1 GeneDB 5'-UTR 903042 903100 . + . mRNA SPAC1687.01 ; Alias "rpc19" ; ID "SPAC1687.01" ; systematic_id "SPAC1687.01" ; primary_name "rpc19" ; gene "rpc19 ||| rpa17 ||| SPAPYUL23.01 ||| SPAC1687.01" ; note "mRNA from SP50769" ;
chromosome1 GeneDB CDS_parts 903101 903676 . + . mRNA SPAC1687.01 ; systematic_id "SPAC1687.01" ; colour "2" ; gene "rpc19 ||| rpa17 ||| SPAPYUL23.01 ||| SPAC1687.01" ; Alias "rpc19" ; db_xref "SPD:06/06B07" ; synonym "rpa17 ||| SPAPYUL23.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=complementation, functionally complements S. cerevisiae RPC19; db_xref=PMID:10079952; date=20101012 ||| term=orthologous to S. cerevisiae YNL113W; date=19700101 ||| term=human POLR1D ortholog; date=20101012" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006360; transcription from RNA polymerase I promoter
GO:0006383; transcription from RNA polymerase III promoter" ; primary_name "rpc19" ; product "DNA-directed RNA polymerase I and III subunit Rpc19" ;
chromosome1 GeneDB CDS 903101 903172 . + . mRNA SPAC1687.01 ; colour "2" ;
chromosome1 GeneDB CDS 903246 903343 . + . mRNA SPAC1687.01 ; colour "2" ;
chromosome1 GeneDB CDS 903392 903468 . + . mRNA SPAC1687.01 ; colour "2" ;
chromosome1 GeneDB CDS 903546 903676 . + . mRNA SPAC1687.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 903173 903178 . + . misc_feature unknown_700 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 903173 903245 . + . intron SPAC1687.01 ; Alias "rpc19" ; db_xref "SPD:06/06B07" ; systematic_id "SPAC1687.01" ; primary_name "rpc19" ; gene "rpc19 ||| rpa17 ||| SPAPYUL23.01 ||| SPAC1687.01" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 903230 903245 . + . misc_feature unknown_701 ; colour "6" ; note "ctaactaaagttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 903264 903361 . + . misc_feature unknown_702 ; note "nominal overlap with small insert clone SPAPYUL23 and cosmid SPAC1687" ;
chromosome1 GeneDB misc_feature 903344 903349 . + . misc_feature unknown_703 ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 903373 903391 . + . misc_feature unknown_704 ; note "ttaacactaatgttttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 903469 903474 . + . misc_feature unknown_705 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 903532 903545 . + . misc_feature unknown_706 ; note "ctaacgaattcaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 903677 903861 . + . mRNA SPAC1687.01 ; Alias "rpc19" ; ID "SPAC1687.01" ; db_xref "SPD:06/06B07" ; systematic_id "SPAC1687.01" ; primary_name "rpc19" ; gene "rpc19 ||| rpa17 ||| SPAPYUL23.01 ||| SPAC1687.01" ; note "mRNA from SP50769" ;
chromosome1 GeneDB 5'-UTR 904045 904265 . + . mRNA SPAC1687.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 904266 905132 . + . mRNA SPAC1687.02 ; db_xref "SPD:11/11F05" ; systematic_id "SPAC1687.02" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR274C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0004222; metalloendopeptidase activity
GO:0071586; CAAX-box protein processing
GO:0007323; peptide pheromone maturation" ; gene "SPAC1687.02" ; product "CAAX prenyl protease (predicted)" ; EC_number "3.4.22.-" ;
chromosome1 GeneDB CDS 904266 904628 . + . mRNA SPAC1687.02 ; colour "7" ;
chromosome1 GeneDB CDS 904680 905132 . + . mRNA SPAC1687.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 904629 904634 . + . misc_feature unknown_707 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 904663 904679 . + . misc_feature unknown_708 ; note "ctcacaagtctttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 905092 905128 . - . mRNA SPAC1687.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.03c" ; systematic_id "SPAC1687.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 905129 906355 . - . mRNA SPAC1687.03c ; systematic_id "SPAC1687.03c" ; colour "7" ; gene "rfc4 ||| SPAC1687.03c" ; Alias "rfc4" ; db_xref "SPD:22/22B10" ; GO "GO:0031390; Ctf18 RFC-like complex
GO:0005663; DNA replication factor C complex
GO:0031391; Elg1 RFC-like complex
GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0003689; DNA clamp loader activity
GO:0006272; leading strand elongation
GO:0043596; nuclear relication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL094C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=AAA family ATPase; date=20081222" ; primary_name "rfc4" ; product "DNA replication factor C complex subunit Rfc4 (predicted)" ;
chromosome1 GeneDB CDS 905129 905977 . - . mRNA SPAC1687.03c ; colour "7" ;
chromosome1 GeneDB CDS 906033 906144 . - . mRNA SPAC1687.03c ; colour "7" ;
chromosome1 GeneDB CDS 906288 906355 . - . mRNA SPAC1687.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 905978 905994 . - . misc_feature unknown_709 ; note "ctgacttatatttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 906027 906032 . - . misc_feature unknown_710 ; note "gtaacc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 906145 906163 . - . misc_feature unknown_711 ; note "ctgatctataaacttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 906282 906287 . - . misc_feature unknown_712 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 906851 906883 . + . mRNA SPAC1687.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 906884 908433 . + . mRNA SPAC1687.04 ; systematic_id "SPAC1687.04" ; colour "7" ; gene "SPAC1687.04" ; db_xref "SPD:45/45A03" ; Alias "mcb1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human MCMBP1 ortholog; date=20101104" ; GO "GO:0006281; DNA repair
GO:0006260; DNA replication" ; primary_name "mcb1" ; product "MCM binding protein homolog Mcb1 (predicted)" ; reserved_name "mcb1" ;
chromosome1 GeneDB CDS 906884 907045 . + . mRNA SPAC1687.04 ; colour "7" ;
chromosome1 GeneDB CDS 907090 908433 . + . mRNA SPAC1687.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 907046 907051 . + . misc_feature unknown_713 ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 907072 907089 . + . misc_feature unknown_714 ; note "ttgacactgaatatttag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 908839 911074 . + . mRNA SPAC1687.05 ; systematic_id "SPAC1687.05" ; colour "2" ; gene "pli1 ||| SPAC1687.05" ; Alias "pli1" ; db_xref "SPD:28/28A05" ; GO "GO:0019789; SUMO ligase activity
GO:0051983; regulation of chromosome segregation
GO:0016925; protein sumoylation
GO:0032204; regulation of telomere maintenance
GO:0000019; regulation of mitotic recombination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-MIZ; date=19700101 ||| term=SAP domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR156C and YDR409W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pli1" ; product "SUMO E3 ligase Pli1" ;
chromosome1 GeneDB CDS 908839 908871 . + . mRNA SPAC1687.05 ; colour "2" ;
chromosome1 GeneDB CDS 908924 911074 . + . mRNA SPAC1687.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 908872 908877 . + . misc_feature unknown_715 ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 908904 908923 . + . misc_feature unknown_716 ; note "ctaacaaaatgaatgtttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 911252 911273 . - . mRNA SPAC1687.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.06c" ; systematic_id "SPAC1687.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 911274 911678 . - . mRNA SPAC1687.06c ; systematic_id "SPAC1687.06c" ; colour "7" ; gene "rpl44 ||| rpl28 ||| SPAC1687.06c" ; Alias "rpl44" ; db_xref "SPD:03/03B03" ; synonym "rpl28" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome" ; primary_name "rpl44" ; product "60S ribosomal protein L28/L44 (predicted)" ;
chromosome1 GeneDB CDS 911274 911678 . - . mRNA SPAC1687.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 911677 911692 . - . mRNA SPAC1687.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB rRNA 912230 912396 . - . rRNA SPRRNA.12 ; systematic_id "SPRRNA.12" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.12" ; product "5S rRNA" ; note "SPRG5SB K00769 Yeast (s.pombe) 5s rRNA gene and flanks" ;
chromosome1 GeneDB CDS_parts 913657 914031 . + . mRNA SPAC1687.07 ; db_xref "SPD:42/42A08" ; systematic_id "SPAC1687.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL012C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; gene "SPAC1687.07" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 913657 914031 . + . mRNA SPAC1687.07 ; colour "10" ;
chromosome1 GeneDB CDS_parts 914328 914618 . + . mRNA SPAC1687.08 ; db_xref "SPD:01/01D03" ; systematic_id "SPAC1687.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1687.08" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 914328 914618 . + . mRNA SPAC1687.08 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 914991 915091 . + . mRNA SPAC1687.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 915092 919231 . + . mRNA SPAC1687.09 ; db_xref "SPD:30/30F10" ; systematic_id "SPAC1687.09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=; date=19700101 ||| term=orthologous to S. cerevisiae YJL083W and YKR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005546; phosphatidylinositol-4,5-bisphosphate binding
GO:0048015; phosphoinositide-mediated signaling" ; gene "SPAC1687.09" ; product "ENTH/VHS domain protein (predicted)" ;
chromosome1 GeneDB CDS 915092 919231 . + . mRNA SPAC1687.09 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 919232 919667 . + . mRNA SPAC1687.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.09" ; systematic_id "SPAC1687.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 919940 919972 . + . mRNA SPAC1687.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 919973 922010 . + . mRNA SPAC1687.10 ; systematic_id "SPAC1687.10" ; colour "8" ; gene "mcp1 ||| SPAC1687.10" ; db_xref "SPD:46/46D03" ; Alias "mcp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "mcp1" ; product "sequence orphan" ; reserved_name "mcp1" ;
chromosome1 GeneDB CDS 919973 920716 . + . mRNA SPAC1687.10 ; colour "8" ;
chromosome1 GeneDB CDS 920769 922010 . + . mRNA SPAC1687.10 ; colour "8" ;
chromosome1 GeneDB misc_feature 920717 920722 . + . misc_feature unknown_717 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 920757 920768 . + . misc_feature unknown_718 ; note "ctaacaatatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 922011 922032 . + . mRNA SPAC1687.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.10" ; systematic_id "SPAC1687.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 922306 922313 . + . mRNA SPAC1687.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 922314 924960 . + . mRNA SPAC1687.11 ; systematic_id "SPAC1687.11" ; colour "7" ; gene "spb1 ||| SPAC1687.11" ; Alias "spb1" ; obsolete_name "pmt2" ; db_xref "SPD:38/38G06" ; GO "GO:0005634; nucleus
GO:0005730; nucleolus
GO:0008649; rRNA methyltransferase activity
GO:0016435; rRNA (guanine) methyltransferase activity
GO:0008650; rRNA (uridine-2'-O-)-methyltransferase activity
GO:0000466; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0000463; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0031167; rRNA methylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL054W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "spb1" ; product "rRNA methyltransferase Spb1 (predicted)" ; EC_number "2.1.1.-" ;
chromosome1 GeneDB CDS 922314 922383 . + . mRNA SPAC1687.11 ; colour "7" ;
chromosome1 GeneDB CDS 922425 922518 . + . mRNA SPAC1687.11 ; colour "7" ;
chromosome1 GeneDB CDS 922571 922747 . + . mRNA SPAC1687.11 ; colour "7" ;
chromosome1 GeneDB CDS 922893 924960 . + . mRNA SPAC1687.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 922384 922389 . + . misc_feature unknown_719 ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 922414 922424 . + . misc_feature unknown_720 ; note "ttaacgtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 922519 922524 . + . misc_feature unknown_721 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 922555 922570 . + . misc_feature unknown_722 ; note "ctgaccgtcaaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 922748 922753 . + . misc_feature unknown_723 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 922877 922892 . + . misc_feature unknown_724 ; note "ttaatgcattgagcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 924961 925001 . + . mRNA SPAC1687.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.11" ; systematic_id "SPAC1687.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 925111 925211 . - . mRNA SPAC1687.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.12c" ; systematic_id "SPAC1687.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 925212 926245 . - . mRNA SPAC1687.12c ; systematic_id "SPAC1687.12c" ; colour "7" ; gene "coq4 ||| SPAC1687.12c" ; private "cofactor metabolic process hardwird for booleean query" ; Alias "coq4" ; db_xref "SPD:15/15F07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006744; ubiquinone biosynthesis" ; primary_name "coq4" ; product "ubiquinone biosynthesis protein Coq4 (predicted)" ;
chromosome1 GeneDB CDS 925212 925446 . - . mRNA SPAC1687.12c ; colour "7" ;
chromosome1 GeneDB CDS 925503 925857 . - . mRNA SPAC1687.12c ; colour "7" ;
chromosome1 GeneDB CDS 925962 926066 . - . mRNA SPAC1687.12c ; colour "7" ;
chromosome1 GeneDB CDS 926122 926245 . - . mRNA SPAC1687.12c ; colour "7" ;
chromosome1 GeneDB misc_feature 925447 925458 . - . misc_feature unknown_725 ; note "ctaacaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 925497 925502 . - . misc_feature unknown_726 ; note "gtatag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 925858 925867 . - . misc_feature unknown_727 ; note "ctaatgctag, splice branch and acceptor, branch too c lose to acceptor" ;
chromosome1 GeneDB misc_feature 925956 925961 . - . misc_feature unknown_728 ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 926067 926079 . - . misc_feature unknown_729 ; note "ctaaagaaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 926116 926121 . - . misc_feature unknown_730 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 926486 926500 . - . mRNA SPAC1687.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.13c" ; systematic_id "SPAC1687.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 926501 927571 . - . mRNA SPAC1687.13c ; systematic_id "SPAC1687.13c" ; colour "2" ; gene "csn5 ||| SPAC1687.13c" ; Alias "csn5" ; db_xref "SPD:16/16E01" ; GO "GO:0008180; signalosome
GO:0010388; cullin deneddylation
GO:0004843; ubiquitin-specific protease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL216C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "csn5" ; product "COP9/signalosome complex subunit Csn5" ;
chromosome1 GeneDB CDS 926501 926671 . - . mRNA SPAC1687.13c ; colour "2" ;
chromosome1 GeneDB CDS 926736 927381 . - . mRNA SPAC1687.13c ; colour "2" ;
chromosome1 GeneDB CDS 927489 927571 . - . mRNA SPAC1687.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 926672 926687 . - . misc_feature unknown_731 ; note "ctaacaagcaatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 926730 926735 . - . misc_feature unknown_732 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 927382 927394 . - . misc_feature unknown_733 ; note "ctaacaataacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 927382 927488 . - . intron SPAC1687.13c ; Alias "csn5" ; db_xref "SPD:16/16E01" ; systematic_id "SPAC1687.13c" ; primary_name "csn5" ; gene "csn5 ||| SPAC1687.13c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 927483 927488 . - . misc_feature unknown_734 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 927570 927640 . - . mRNA SPAC1687.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 927806 928212 . - . mRNA SPAC1687.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.14c" ; systematic_id "SPAC1687.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 928213 928443 . - . mRNA SPAC1687.14c ; db_xref "SPD:01/01B02" ; systematic_id "SPAC1687.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC1687.14c" ; product "EF hand family protein, unknown role" ;
chromosome1 GeneDB CDS 928213 928443 . - . mRNA SPAC1687.14c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 928442 928795 . - . mRNA SPAC1687.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 929159 929473 . - . mRNA SPAC1687.23c ; db_xref "SPD:51/51G01" ; systematic_id "SPAC1687.23c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC1687.23c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 929159 929473 . - . mRNA SPAC1687.23c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 929841 929938 . + . mRNA SPAC1687.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 929939 931631 . + . mRNA SPAC1687.15 ; systematic_id "SPAC1687.15" ; colour "2" ; gene "gsk3 ||| skp1 ||| SPAC1687.15" ; Alias "gsk3" ; db_xref "SPD:40/40F09" ; synonym "skp1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=glycogen synthase kinase 3 (GSK- 3) subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8524294; date=19700101 ||| term=orthologous to S. cerevisiae YMR139W and YDL079C and YNL307C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sensitive to high temperature; qualifier=deletion; cv=phenotype; db_xref=PMID:8524294; date=20090113 ||| term=phenotype, sporulation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:8524294; date=20090113 ||| term=modification, phosphorylated; residue=S335; cv=pt_mod; db_xref=PMID:8524294; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0071775; regulation of cell cycle cytokinesis
GO:0051983; regulation of chromosome segregation
GO:0006468; protein amino acid phosphorylation
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "gsk3" ; product "serine/threonine protein kinase Gsk3" ;
chromosome1 GeneDB CDS 929939 929957 . + . mRNA SPAC1687.15 ; colour "2" ;
chromosome1 GeneDB CDS 930006 930196 . + . mRNA SPAC1687.15 ; colour "2" ;
chromosome1 GeneDB CDS 930678 931631 . + . mRNA SPAC1687.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 929958 929963 . + . misc_feature unknown_735 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 929990 930005 . + . misc_feature unknown_736 ; note "ctaaccgtataaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 930197 930202 . + . misc_feature unknown_737 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 930197 930677 . + . intron SPAC1687.15 ; Alias "gsk3" ; db_xref "SPD:40/40F09" ; systematic_id "SPAC1687.15" ; primary_name "gsk3" ; gene "gsk3 ||| skp1 ||| SPAC1687.15" ; note "confirmed by SPD206" ;
chromosome1 GeneDB misc_feature 930661 930677 . + . misc_feature unknown_738 ; note "ctaacacttaattttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 931632 932095 . + . mRNA SPAC1687.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.15" ; systematic_id "SPAC1687.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 932535 933051 . - . mRNA SPAC1687.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.16c" ; systematic_id "SPAC1687.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 933052 933954 . - . mRNA SPAC1687.16c ; systematic_id "SPAC1687.16c" ; colour "2" ; gene "SPAC1687.16c" ; Alias "erg31" ; db_xref "SPD:12/12D08" ; synonym "erg3" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0000248; C-5 sterol desaturase activity
GO:0005506; iron ion binding
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthetic process
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane
GO:0006623; protein targeting to vacuole" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=orthologous to S. cerevisiae YLR056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "erg31" ; product "C-5 sterol desaturase Erg31" ; EC_number "1.14.21.6" ;
chromosome1 GeneDB CDS 933052 933954 . - . mRNA SPAC1687.16c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 933953 933965 . - . mRNA SPAC1687.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 934056 934503 . + . misc_RNA SPNCRNA.160 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.160" ; synonym "SPNG153" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB tRNA 934665 934738 . - . tRNA SPATRNAALA.01 ; systematic_id "SPATRNAALA.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033440; ACG codon-amino acid adaptor activity" ; gene "SPATRNAALA.01" ; product "tRNA Alanine" ; note "tRNA Ala anticodon AGC, Cove score 67.24" ;
chromosome1 GeneDB 3'-UTR 935012 935248 . - . mRNA SPAC1687.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.17c" ; systematic_id "SPAC1687.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 935249 935989 . - . mRNA SPAC1687.17c ; db_xref "SPD:08/08H12" ; systematic_id "SPAC1687.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YDR411C and YBR201W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0030433; ER-associated protein catabolism" ; gene "SPAC1687.17c" ; product "Der1-like (degradation in the ER) family (predicted)" ;
chromosome1 GeneDB CDS 935249 935668 . - . mRNA SPAC1687.17c ; colour "7" ;
chromosome1 GeneDB CDS 935860 935899 . - . mRNA SPAC1687.17c ; colour "7" ;
chromosome1 GeneDB CDS 935943 935989 . - . mRNA SPAC1687.17c ; colour "7" ;
chromosome1 GeneDB misc_feature 935669 935686 . - . misc_feature unknown_739 ; note "ttaacaagatttatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 935854 935859 . - . misc_feature unknown_740 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 935900 935914 . - . misc_feature unknown_741 ; note "ctaatttttatgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 935937 935942 . - . misc_feature unknown_742 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 935988 936001 . - . mRNA SPAC1687.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 936222 936270 . - . mRNA SPAC1687.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.18c" ; systematic_id "SPAC1687.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 936271 938107 . - . mRNA SPAC1687.18c ; systematic_id "SPAC1687.18c" ; colour "2" ; gene "ssl3 ||| SPAC1687.18c" ; Alias "ssl3" ; db_xref "SPD:36/36G07" ; GO "GO:0032116; cohesin loading complex
GO:0000794; condensed nuclear chromosome
GO:0005515; protein binding
GO:0034087; establishment of mitotic sister chromatid cohesion
GO:0007064; mitotic sister chromatid cohesion
GO:0034184; positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0034613; cellular protein localization
GO:0071921; cohesin localization to chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; db_xref=InterPro:IPR011990; date=20060524 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16682348; date=20060524 ||| term=orthologous to S. cerevisiae YER147C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090105 ||| term=species distribution, conserved in Vertebrates; date=20090105 ||| term=species distribution, conserved in Eukaryotes only; date=20090105" ; primary_name "ssl3" ; product "cohesin loading factor Ssl3" ;
chromosome1 GeneDB CDS 936271 936371 . - . mRNA SPAC1687.18c ; colour "2" ;
chromosome1 GeneDB CDS 936453 937719 . - . mRNA SPAC1687.18c ; colour "2" ;
chromosome1 GeneDB CDS 937760 937891 . - . mRNA SPAC1687.18c ; colour "2" ;
chromosome1 GeneDB CDS 937928 938107 . - . mRNA SPAC1687.18c ; colour "2" ;
chromosome1 GeneDB misc_feature 936372 936386 . - . misc_feature unknown_743 ; note "ttaactttattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 936447 936452 . - . misc_feature unknown_744 ; note "gtatta, splice donor sequence" ;
chromosome1 GeneDB misc_feature 937720 937732 . - . misc_feature unknown_745 ; note "ttgacattattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 937754 937759 . - . misc_feature unknown_746 ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 937892 937902 . - . misc_feature unknown_747 ; note "ctaaattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 937922 937927 . - . misc_feature unknown_748 ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 938421 938447 . - . mRNA SPAC1687.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.19c" ; systematic_id "SPAC1687.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 938448 939759 . - . mRNA SPAC1687.19c ; db_xref "SPD:22/22G12" ; systematic_id "SPAC1687.19c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008479; queuine tRNA-ribosyltransferase activity
GO:0008616; queuosine biosynthesis" ; gene "SPAC1687.19c" ; product "queuine tRNA-ribosyltransferase (predicted)" ; EC_number "2.4.2.29" ;
chromosome1 GeneDB CDS 938448 938958 . - . mRNA SPAC1687.19c ; colour "7" ;
chromosome1 GeneDB CDS 939002 939575 . - . mRNA SPAC1687.19c ; colour "7" ;
chromosome1 GeneDB CDS 939630 939759 . - . mRNA SPAC1687.19c ; colour "7" ;
chromosome1 GeneDB misc_feature 938959 938978 . - . misc_feature unknown_749 ; note "ctaatctaacaatattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 938996 939001 . - . misc_feature unknown_750 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 939576 939594 . - . misc_feature unknown_751 ; note "ttaacaaattgtaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 939624 939629 . - . misc_feature unknown_752 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 939871 941889 . - . mRNA SPAC1687.20c ; systematic_id "SPAC1687.20c" ; colour "2" ; gene "mis6 ||| SPAC1687.20c" ; Alias "mis6" ; db_xref "SPD:27/27E07" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000779; condensed chromosome, pericentric region
GO:0000939; inner kinetochore of condensed chromosome
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034080; DNA replication-independent nucleosome assembly at centromere
GO:0051382; kinetochore assembly
GO:0034501; protein localization to kinetochore
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0000819; sister chromatid segregation
GO:0007052; mitotic spindle organization" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR381W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CENP-I ortholog; date=20090422 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis6" ; product "inner centromere protein, CENP-I ortholog Mis6" ;
chromosome1 GeneDB CDS 939871 941889 . - . mRNA SPAC1687.20c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 942217 942239 . + . mRNA SPAC1687.21 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.21" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 942240 943166 . + . mRNA SPAC1687.21 ; db_xref "SPD:43/43F01" ; systematic_id "SPAC1687.21" ; synonym "SPAC222.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR283W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC1687.21 ||| SPAC222.01" ; product "phosphoglycerate mutase family (predicted)" ; EC_number "5.4.2.1" ;
chromosome1 GeneDB CDS 942240 942296 . + . mRNA SPAC1687.21 ; colour "7" ;
chromosome1 GeneDB CDS 942451 942573 . + . mRNA SPAC1687.21 ; colour "7" ;
chromosome1 GeneDB CDS 942615 942680 . + . mRNA SPAC1687.21 ; colour "7" ;
chromosome1 GeneDB CDS 942727 942748 . + . mRNA SPAC1687.21 ; colour "7" ;
chromosome1 GeneDB CDS 942805 943166 . + . mRNA SPAC1687.21 ; colour "7" ;
chromosome1 GeneDB misc_feature 942297 942302 . + . misc_feature unknown_753 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 942432 942450 . + . misc_feature unknown_754 ; note "cttaccatcttaattgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 942574 942579 . + . misc_feature unknown_755 ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 942599 942614 . + . misc_feature unknown_756 ; note "ttaacaaaaaaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 942681 942686 . + . misc_feature unknown_757 ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 942709 942726 . + . misc_feature unknown_758 ; note "ctaatattgtctaaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 942739 945020 . + . misc_feature unknown_759 ; note "nominal overlap with cosmid c1687" ;
chromosome1 GeneDB misc_feature 942749 942754 . + . misc_feature unknown_760 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 942793 942804 . + . misc_feature unknown_761 ; colour "6" ; note "ctaatgaaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 943167 943207 . + . mRNA SPAC1687.21 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.21" ; systematic_id "SPAC1687.21" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 943372 943624 . - . mRNA SPAC1687.22c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1687.22c" ; systematic_id "SPAC1687.22c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 943625 945927 . - . mRNA SPAC1687.22c ; systematic_id "SPAC1687.22c" ; colour "7" ; gene "SPAC1687.22c ||| SPAC222.02c ||| puf3" ; Alias "puf3" ; db_xref "SPD:38/38B11" ; synonym "SPAC222.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YLL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003729; mRNA binding
GO:0000288; mRNA catabolism, deadenylation- dependent decay" ; primary_name "puf3" ; product "RNA-binding protein Puf3 (predicted)" ;
chromosome1 GeneDB CDS 943625 943692 . - . mRNA SPAC1687.22c ; colour "7" ;
chromosome1 GeneDB CDS 943741 943904 . - . mRNA SPAC1687.22c ; colour "7" ;
chromosome1 GeneDB CDS 943961 945927 . - . mRNA SPAC1687.22c ; colour "7" ;
chromosome1 GeneDB misc_feature 943693 943708 . - . misc_feature unknown_762 ; colour "6" ; note "ctaattattatgatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 943735 943740 . - . misc_feature unknown_763 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 943905 943918 . - . misc_feature unknown_764 ; colour "6" ; note "ctaatttcgttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 943955 943960 . - . misc_feature unknown_765 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 945926 946890 . - . mRNA SPAC1687.22c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1687.22c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 947964 948581 . - . mRNA SPAC222.03c ; systematic_id "SPAC222.03c" ; colour "7" ; gene "tim10 ||| SPAC222.03c" ; Alias "tim10" ; db_xref "SPD:06/06H11" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0005758; mitochondrial intermembrane space
GO:0042719; mitochondrial intermembrane space protein transporter complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-Tim10/DDP type; date=19700101 ||| term=orthologous to S. cerevisiae YHR005C-A and YBR091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tim10" ; product "Tim9-Tim10 complex subunit Tim10 (predicted)" ;
chromosome1 GeneDB CDS 947964 948132 . - . mRNA SPAC222.03c ; colour "7" ;
chromosome1 GeneDB CDS 948481 948581 . - . mRNA SPAC222.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 948133 948149 . - . misc_feature unknown_766 ; colour "6" ; note "ctaacattcctttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 948475 948480 . - . misc_feature unknown_767 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 949517 949645 . + . mRNA SPAC222.19 ; db_xref "PMID:21270388" ; systematic_id "SPAC222.19" ;
chromosome1 GeneDB CDS_parts 949646 950047 . + . mRNA SPAC222.19 ; Alias "tam1" ; systematic_id "SPAC222.19" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; colour "8" ; primary_name "tam1" ; gene "SPAC222.19" ; product "sequence orphan" ; note "new gene; conserved in japonicus" ;
chromosome1 GeneDB CDS 949646 949680 . + . mRNA SPAC222.19 ; colour "8" ;
chromosome1 GeneDB CDS 949729 950047 . + . mRNA SPAC222.19 ; colour "8" ;
chromosome1 GeneDB intron 949681 949728 . + . intron unknown_768 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome1 GeneDB 3'-UTR 950048 950181 . + . mRNA SPAC222.19 ; db_xref "PMID:21270388" ; systematic_id "SPAC222.19" ;
chromosome1 GeneDB 3'-UTR 950192 950297 . - . mRNA SPAC222.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC222.04c" ; systematic_id "SPAC222.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 950298 950651 . - . mRNA SPAC222.04c ; systematic_id "SPAC222.04c" ; colour "2" ; gene "ies6 ||| SPAC222.04c" ; Alias "ies6" ; db_xref "SPD:02/02C07" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL044W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ies6" ; product "Ino80 complex subunit Ies6" ;
chromosome1 GeneDB CDS 950298 950651 . - . mRNA SPAC222.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 950650 950685 . - . mRNA SPAC222.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 950905 951053 . - . mRNA SPAC222.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC222.05c" ; systematic_id "SPAC222.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 951054 952603 . - . mRNA SPAC222.05c ; systematic_id "SPAC222.05c" ; colour "7" ; gene "SPAC222.05c ||| mss1" ; Alias "mss1" ; db_xref "SPD:45/45A04" ; GO "GO:0006400; tRNA modification
GO:0005743; mitochondrial inner membrane
GO:0005525; GTP binding
GO:0003924; GTPase
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mss1" ; product "mitochondrial GTPase (predicted)" ;
chromosome1 GeneDB CDS 951054 952394 . - . mRNA SPAC222.05c ; colour "7" ;
chromosome1 GeneDB CDS 952454 952603 . - . mRNA SPAC222.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 952395 952404 . - . misc_feature unknown_769 ; colour "6" ; note "ctaatattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 952448 952453 . - . misc_feature unknown_770 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 952602 952943 . - . mRNA SPAC222.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 953106 953112 . + . mRNA SPAC222.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 953113 954074 . + . mRNA SPAC222.06 ; systematic_id "SPAC222.06" ; colour "7" ; gene "mak16 ||| SPAC222.06" ; Alias "mak16" ; db_xref "SPD:13/13F05" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mak16" ; product "nuclear HMG-like acidic protein Mak16 (predicted)" ;
chromosome1 GeneDB CDS 953113 953174 . + . mRNA SPAC222.06 ; colour "7" ;
chromosome1 GeneDB CDS 953228 954074 . + . mRNA SPAC222.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 953175 953180 . + . misc_feature unknown_771 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 953175 953227 . + . intron SPAC222.06 ; Alias "mak16" ; db_xref "SPD:13/13F05" ; systematic_id "SPAC222.06" ; primary_name "mak16" ; gene "mak16 ||| SPAC222.06" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 953212 953227 . + . misc_feature unknown_772 ; colour "6" ; note "ctaacacaatttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 954075 954207 . + . mRNA SPAC222.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC222.06" ; systematic_id "SPAC222.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 954260 954354 . - . mRNA SPAC222.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC222.07c" ; systematic_id "SPAC222.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 954355 956474 . - . mRNA SPAC222.07c ; systematic_id "SPAC222.07c" ; colour "2" ; gene "hri2 ||| SPAC222.07c" ; Alias "hri2" ; db_xref "SPD:37/37D05" ; GO "GO:0005515; protein binding
GO:0032057; negative regulation of translational initiation in response to stress
GO:0006468; protein amino acid phosphorylation
GO:0006468; protein amino acid phosphorylation
GO:0033554; cellular response to stress
GO:0005524; ATP binding
GO:0004694; eukaryotic translation initiation factor 2 alpha kinase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12242291; date=19700101 ||| term=HRI subfamily; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18502752; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Tif211; qualifier=phosphorylates; db_xref=PMID:12242291; date=20100820" ; primary_name "hri2" ; product "eIF2 alpha kinase Hri2" ;
chromosome1 GeneDB CDS 954355 955585 . - . mRNA SPAC222.07c ; colour "2" ;
chromosome1 GeneDB CDS 955650 956184 . - . mRNA SPAC222.07c ; colour "2" ;
chromosome1 GeneDB CDS 956234 956272 . - . mRNA SPAC222.07c ; colour "2" ;
chromosome1 GeneDB CDS 956360 956474 . - . mRNA SPAC222.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 955586 955600 . - . misc_feature unknown_773 ; colour "6" ; note "ctaacatcggcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 955644 955649 . - . misc_feature unknown_774 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 956185 956198 . - . misc_feature unknown_775 ; colour "6" ; note "cttacttattaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 956228 956233 . - . misc_feature unknown_776 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 956273 956288 . - . misc_feature unknown_777 ; colour "6" ; note "ctaatgtatttattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 956354 956359 . - . misc_feature unknown_778 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 956473 956626 . - . mRNA SPAC222.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 957183 957254 . + . tRNA SPATRNAGLU.02 ; systematic_id "SPATRNAGLU.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033402; TTC codon-amino acid adaptor activity" ; gene "SPATRNAGLU.02" ; product "tRNA Glutamic acid" ; note "tRNA Glu anticodon TTC, Cove score 62.18" ;
chromosome1 GeneDB 3'-UTR 957561 957645 . - . mRNA SPAC222.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC222.08c" ; systematic_id "SPAC222.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 957646 958350 . - . mRNA SPAC222.08c ; db_xref "SPD:08/08C08" ; systematic_id "SPAC222.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR095C and YNL334C and YFL060C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0008615; pyridoxine biosynthesis" ; gene "SPAC222.08c" ; product "glutamine aminotransferease subunit (predicted)" ;
chromosome1 GeneDB CDS 957646 958350 . - . mRNA SPAC222.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 958349 958606 . - . mRNA SPAC222.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snRNA 959305 959770 . - . snRNA SPSNRNA.02 ; Alias "snu2" ; db_xref "EMBL:X55772 ||| Rfam:RF00004" ; systematic_id "SPSNRNA.02" ; synonym "U2" ; primary_name "snu2" ; gene "snu2 ||| U2 ||| SPSNRNA.02" ; product "small nuclear RNA U2" ;
chromosome1 GeneDB 5'-UTR 959927 960060 . + . mRNA SPAC222.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 960061 962113 . + . mRNA SPAC222.09 ; systematic_id "SPAC222.09" ; colour "2" ; gene "seb1 ||| SPAC222.09" ; db_xref "SPD:27/27F08" ; Alias "seb1" ; GO "GO:0005634; nucleus
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0031123; RNA 3'-end processing
GO:0030847; transcription termination from Pol II promoter, RNA polymerase(A)-independent
GO:0035649; Nrd1 complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL251C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, SEven Binding; date=20100126" ; primary_name "seb1" ; product "RNA-binding protein Seb1" ;
chromosome1 GeneDB CDS 960061 960417 . + . mRNA SPAC222.09 ; colour "2" ;
chromosome1 GeneDB CDS 960608 962113 . + . mRNA SPAC222.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 960418 960423 . + . misc_feature unknown_779 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 960592 960607 . + . misc_feature unknown_780 ; colour "6" ; note "ctaactaagcatgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 962114 962227 . + . mRNA SPAC222.09 ; Alias "seb1" ; ID "SPAC222.09" ; db_xref "SPD:27/27F08" ; systematic_id "SPAC222.09" ; primary_name "seb1" ; gene "seb1 ||| SPAC222.09" ; note "mRNA from AU010138" ;
chromosome1 GeneDB 3'-UTR 962345 962436 . - . mRNA SPAC222.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC222.10c" ; systematic_id "SPAC222.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 962437 964434 . - . mRNA SPAC222.10c ; systematic_id "SPAC222.10c" ; colour "2" ; gene "byr4 ||| SPAC222.10c" ; Alias "byr4" ; db_xref "SPD:37/37B08" ; GO "GO:0010974; negative regulation of barrier septum formation
GO:0071776; negative regulation of cell cycle cytokinesis
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0046578; regulation of Ras protein signal transduction
GO:0031030; negative regulation of septation initiation signaling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is Spg1; db_xref=PMID:9742395; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "byr4" ; product "two-component GAP Byr4" ;
chromosome1 GeneDB CDS 962437 964434 . - . mRNA SPAC222.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 964433 964712 . - . mRNA SPAC222.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 966250 966429 . + . mRNA SPAC222.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 966430 967368 . + . mRNA SPAC222.11 ; systematic_id "SPAC222.11" ; colour "7" ; gene "hem13 ||| SPAC222.11" ; Alias "hem13" ; db_xref "SPD:13/13B07" ; GO "GO:0004109; coproporphyrinogen oxidase activity
GO:0006783; heme biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR044W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hem13" ; product "coproporphyrinogen III oxidase (predicted)" ; EC_number "1.3.3.3" ; reserved_name "hem13" ;
chromosome1 GeneDB CDS 966430 967368 . + . mRNA SPAC222.11 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 967369 967591 . + . mRNA SPAC222.11 ; Alias "hem13" ; ID "SPAC222.11" ; db_xref "SPD:13/13B07" ; systematic_id "SPAC222.11" ; primary_name "hem13" ; gene "hem13 ||| SPAC222.11" ; note "mRNA from AU010941" ;
chromosome1 GeneDB 3'-UTR 967652 967864 . - . mRNA SPAC222.17 ; ID "SPAC222.17" ; db_xref "PMID:18488015" ; systematic_id "SPAC222.17" ; gene "SPAC222.17" ;
chromosome1 GeneDB CDS_parts 967865 968205 . - . mRNA SPAC222.17 ; obsolete_name "SPNG161 ||| SPNCRNA.162" ; db_xref "PMID:18488015" ; systematic_id "SPAC222.17" ; controlled_curation "term=similar to D. hansenii DEHA0A06743g; date=20080102 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "10" ; gene "SPAC222.17" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 967865 967958 . - . mRNA SPAC222.17 ; colour "10" ;
chromosome1 GeneDB CDS 968030 968205 . - . mRNA SPAC222.17 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 968206 968379 . - . mRNA SPAC222.17 ; ID "SPAC222.17" ; db_xref "PMID:18488015" ; systematic_id "SPAC222.17" ; gene "SPAC222.17" ;
chromosome1 GeneDB 3'-UTR 968563 968782 . - . mRNA SPAC222.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC222.12c" ; systematic_id "SPAC222.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 968783 970360 . - . mRNA SPAC222.12c ; systematic_id "SPAC222.12c" ; colour "2" ; gene "atp2 ||| SPAC222.12c" ; Alias "atp2" ; db_xref "SPD:25/25D07" ; GO "GO:0005754; mitochondrial proton-transporting ATP synthase, catalytic core
GO:0043531; ADP binding
GO:0016887; ATPase activity
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR121W; date=19700101 ||| term=complementation, functionally complemented by S. cerevisiae ATP2; db_xref=PMID:6228552; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "atp2" ; product "F1-ATPase beta subunit Atp2" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB CDS 968783 970360 . - . mRNA SPAC222.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 970359 970377 . - . mRNA SPAC222.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 970980 971257 . - . mRNA SPAC222.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC222.13c" ; systematic_id "SPAC222.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 971258 973241 . - . mRNA SPAC222.13c ; db_xref "SPD:27/27C06" ; systematic_id "SPAC222.13c" ; colour "7" ; GO "GO:0003873; 6-phosphofructo-2-kinase activity
GO:0006003; fructose 2,6-bisphosphate metabolism
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC222.13c" ; product "6-phosphofructo-2-kinase (predicted)" ; EC_number "2.7.1.105" ;
chromosome1 GeneDB CDS 971258 971404 . - . mRNA SPAC222.13c ; colour "7" ;
chromosome1 GeneDB CDS 971447 972268 . - . mRNA SPAC222.13c ; colour "7" ;
chromosome1 GeneDB CDS 972320 972644 . - . mRNA SPAC222.13c ; colour "7" ;
chromosome1 GeneDB CDS 972757 973241 . - . mRNA SPAC222.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 971405 971417 . - . misc_feature unknown_781 ; colour "6" ; note "ttaacaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 971441 971446 . - . misc_feature unknown_782 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 972269 972284 . - . misc_feature unknown_783 ; colour "6" ; note "ctaacctttttatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 972314 972319 . - . misc_feature unknown_784 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 972645 972658 . - . misc_feature unknown_785 ; colour "6" ; note "ctaacttggtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 972751 972756 . - . misc_feature unknown_786 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 973240 973458 . - . mRNA SPAC222.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 973950 974166 . - . mRNA SPAC222.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC222.14c" ; systematic_id "SPAC222.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 974167 976733 . - . mRNA SPAC222.14c ; db_xref "SPD:29/29D05" ; systematic_id "SPAC222.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR165W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005525; GTP binding
GO:0016044; membrane organization and biogenesis
GO:0005737; cytoplasm
GO:0016192; vesicle-mediated transport" ; gene "SPAC222.14c" ; product "GTP binding protein Sey1 (predicted)" ;
chromosome1 GeneDB CDS 974167 976137 . - . mRNA SPAC222.14c ; colour "7" ;
chromosome1 GeneDB CDS 976245 976330 . - . mRNA SPAC222.14c ; colour "7" ;
chromosome1 GeneDB CDS 976389 976463 . - . mRNA SPAC222.14c ; colour "7" ;
chromosome1 GeneDB CDS 976577 976733 . - . mRNA SPAC222.14c ; colour "7" ;
chromosome1 GeneDB misc_feature 976138 976150 . - . misc_feature unknown_787 ; colour "6" ; note "ctaaccaacctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 976239 976244 . - . misc_feature unknown_788 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 976331 976344 . - . misc_feature unknown_789 ; colour "6" ; note "ctaatttttgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 976383 976388 . - . misc_feature unknown_790 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 976464 976479 . - . misc_feature unknown_791 ; colour "6" ; note "ttaactctatgattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 976571 976576 . - . misc_feature unknown_792 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 976732 976756 . - . mRNA SPAC222.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 977075 977568 . - . misc_RNA SPNCRNA.50 ; Alias "prl50" ; db_xref "EMBL:AB084862 ||| PMID:12597277" ; systematic_id "SPNCRNA.50" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl50" ; gene "prl50 ||| SPNCRNA.50" ; product "non-coding RNA poly(A)-bearing (predicted)" ;
chromosome1 GeneDB misc_feature 977504 977563 . - . misc_feature unknown_793 ; note "removed 22.02.07, unlikely to be real and interferes with list download, becasue it is embedded in a ncRNA longest ORF in prl50 (19AA); date=20060721" ;
chromosome1 GeneDB CDS_parts 977709 978637 . + . mRNA SPAC222.15 ; systematic_id "SPAC222.15" ; colour "2" ; db_xref "SPD:13/13A01" ; Alias "meu13" ; synonym "SPAC821.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060420 ||| term=protein sequence feature, coiled-coil; date=20070103 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; qualifier=during_meiotic_prophase_I; db_xref=PMID:11447128; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=orthologous to S. cerevisiae YGL033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000790; nuclear chromatin
GO:0005515; protein binding
GO:0007131; meiotic recombination
GO:0007129; synapsis" ; primary_name "meu13" ; product "Tat binding protein 1(TBP-1)-interacting protein (TBPIP) homolog (predicted)" ;
chromosome1 GeneDB CDS 977709 977757 . + . mRNA SPAC222.15 ; colour "2" ;
chromosome1 GeneDB CDS 977804 977857 . + . mRNA SPAC222.15 ; colour "2" ;
chromosome1 GeneDB CDS 977905 978006 . + . mRNA SPAC222.15 ; colour "2" ;
chromosome1 GeneDB CDS 978049 978189 . + . mRNA SPAC222.15 ; colour "2" ;
chromosome1 GeneDB CDS 978333 978637 . + . mRNA SPAC222.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 977758 977763 . + . misc_feature unknown_794 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 977790 977803 . + . misc_feature unknown_795 ; colour "6" ; note "ctaatcaatcgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 977858 977863 . + . misc_feature unknown_796 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 977886 977904 . + . misc_feature unknown_797 ; colour "6" ; note "ctgacaattttgttaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 978007 978012 . + . misc_feature unknown_798 ; colour "6" ; note "gtactg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 978034 978048 . + . misc_feature unknown_799 ; colour "6" ; note "ctaacgattactgag, splice branch and acceptor ||| this gene is flagged as pseudo, as acceptor which conserves homology is gag" ;
chromosome1 GeneDB misc_feature 978320 978332 . + . misc_feature unknown_800 ; colour "6" ; note "ctaactctaaaag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 978903 979374 . + . mRNA SPAC222.18 ; db_xref "PMID:18488015" ; systematic_id "SPAC222.18" ; controlled_curation "term=species distribution, no apparent S. cerevisiae ortholog; date=20080102 ||| term=SR family; date=20080513 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=rrm RNA recognition motif; date=20100630" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; gene "SPAC222.18" ; product "Srp1 family splicing factor (predicted)" ;
chromosome1 GeneDB CDS 978903 979021 . + . mRNA SPAC222.18 ; colour "7" ;
chromosome1 GeneDB CDS 979120 979176 . + . mRNA SPAC222.18 ; colour "7" ;
chromosome1 GeneDB CDS 979215 979374 . + . mRNA SPAC222.18 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 979560 979678 . - . mRNA SPAC222.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC222.16c" ; systematic_id "SPAC222.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 979679 981064 . - . mRNA SPAC222.16c ; systematic_id "SPAC222.16c" ; colour "7" ; gene "csn3 ||| SPAC222.16c ||| SPAC821.02c" ; Alias "csn3" ; db_xref "SPD:21/21D10" ; synonym "SPAC821.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008180; signalosome
GO:0010388; cullin deneddylation" ; primary_name "csn3" ; product "COP9/signalosome complex subunit Csn3 (predicted)" ;
chromosome1 GeneDB CDS 979679 980026 . - . mRNA SPAC222.16c ; colour "7" ;
chromosome1 GeneDB CDS 980093 980239 . - . mRNA SPAC222.16c ; colour "7" ;
chromosome1 GeneDB CDS 980289 980378 . - . mRNA SPAC222.16c ; colour "7" ;
chromosome1 GeneDB CDS 980434 980532 . - . mRNA SPAC222.16c ; colour "7" ;
chromosome1 GeneDB CDS 980628 980774 . - . mRNA SPAC222.16c ; colour "7" ;
chromosome1 GeneDB CDS 980846 980898 . - . mRNA SPAC222.16c ; colour "7" ;
chromosome1 GeneDB CDS 980944 981064 . - . mRNA SPAC222.16c ; colour "7" ;
chromosome1 GeneDB misc_feature 980027 980044 . - . misc_feature unknown_801 ; colour "6" ; note "ctaaccatcttgaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 980087 980092 . - . misc_feature unknown_802 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 980240 980257 . - . misc_feature unknown_803 ; colour "6" ; note "ctaattctttcgattcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 980283 980288 . - . misc_feature unknown_804 ; colour "6" ; note "gtatct, splice donor sequence" ;
chromosome1 GeneDB misc_feature 980379 980394 . - . misc_feature unknown_805 ; colour "6" ; note "ctaatgcgttaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 980428 980433 . - . misc_feature unknown_806 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 980533 980545 . - . misc_feature unknown_807 ; colour "6" ; note "ctaaccaattcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 980622 980627 . - . misc_feature unknown_808 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 980775 980787 . - . misc_feature unknown_809 ; colour "6" ; note "ctaactaaaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 980840 980845 . - . misc_feature unknown_810 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 980899 980911 . - . misc_feature unknown_811 ; colour "6" ; note "ctaacttgtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 980938 980943 . - . misc_feature unknown_812 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 981063 981101 . - . mRNA SPAC222.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC222.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 981542 981797 . - . mRNA SPAC821.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC821.03c" ; systematic_id "SPAC821.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 981798 983255 . - . mRNA SPAC821.03c ; db_xref "SPD:23/23E05" ; systematic_id "SPAC821.03c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC821.03c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 981798 983255 . - . mRNA SPAC821.03c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 983256 983481 . - . mRNA SPAC821.03c ; ID "SPAC821.03c" ; systematic_id "SPAC821.03c" ; gene "SPAC821.03c" ; note "mRNA from spc02442" ;
chromosome1 GeneDB 3'-UTR 983852 985010 . - . mRNA SPAC821.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC821.04c" ; systematic_id "SPAC821.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 985011 986747 . - . mRNA SPAC821.04c ; systematic_id "SPAC821.04c" ; colour "2" ; gene "cid13 ||| SPAC821.04c" ; Alias "cid13" ; db_xref "SPD:45/45F11" ; GO "GO:0005737; cytoplasm
GO:0004652; polynucleotide adenylyltransferase activity
GO:0006378; mRNA polyadenylation
GO:0033314; mitotic cell cycle DNA replication checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is suc22; db_xref=PMID:12062100; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cid13" ; product "poly(A) polymerase Cid13" ; EC_number "2.7.7.19" ;
chromosome1 GeneDB CDS 985011 986747 . - . mRNA SPAC821.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 986746 986987 . - . mRNA SPAC821.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC821.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snRNA 987631 988266 . - . snRNA SPSNRNA.03 ; Alias "snu3" ; db_xref "RFAM:RF00012" ; systematic_id "SPSNRNA.03" ; synonym "U3 ||| U3snRNA" ; primary_name "snu3" ; gene "U3snRNA ||| snu3 ||| U3 ||| SPSNRNA.03" ; product "small nuclear RNA U3" ;
chromosome1 GeneDB 5'-UTR 988361 988396 . + . mRNA SPAC821.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC821.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 988397 989688 . + . mRNA SPAC821.05 ; db_xref "SPD:22/22D08" ; systematic_id "SPAC821.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=complementation, functionally complemented by human eif3h; db_xref=PMID:19061185; cv=complementation; date=20081211 ||| term=phenotype, sensitive to caffeine; qualifier=deletion; cv=phenotype; date=20081211" ; colour "2" ; GO "GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0030437; ascospore formation
GO:0071313; cellular response to caffeine
GO:0006413; translational initiation
GO:0004843; ubiquitin-specific protease activity" ; gene "SPAC821.05" ; product "translation initiation factor eIF3h (p40)" ;
chromosome1 GeneDB CDS 988397 988422 . + . mRNA SPAC821.05 ; colour "2" ;
chromosome1 GeneDB CDS 988462 988568 . + . mRNA SPAC821.05 ; colour "2" ;
chromosome1 GeneDB CDS 988748 989688 . + . mRNA SPAC821.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 988423 988428 . + . misc_feature unknown_813 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 988450 988461 . + . misc_feature unknown_814 ; colour "6" ; note "ctaattcagtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 988569 988574 . + . misc_feature unknown_815 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 988733 988747 . + . misc_feature unknown_816 ; colour "6" ; note "ctaactttcgttcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 989689 989866 . + . mRNA SPAC821.05 ; ID "SPAC821.05" ; db_xref "SPD:22/22D08" ; systematic_id "SPAC821.05" ; gene "SPAC821.05" ; note "mRNA from AU010493" ;
chromosome1 GeneDB 5'-UTR 990230 990249 . + . mRNA SPAC821.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC821.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 990250 991525 . + . mRNA SPAC821.06 ; systematic_id "SPAC821.06" ; colour "2" ; gene "spn2 ||| SPAC821.06" ; Alias "spn2" ; db_xref "SPD:20/20D09" ; GO "GO:0005525; GTP binding
GO:0005940; septin ring
GO:0031105; septin complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15385632; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; date=20100727 ||| term=orthologous to S. cerevisiae YCR002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "spn2" ; product "septin Spn2" ;
chromosome1 GeneDB CDS 990250 990289 . + . mRNA SPAC821.06 ; colour "2" ;
chromosome1 GeneDB CDS 990339 990413 . + . mRNA SPAC821.06 ; colour "2" ;
chromosome1 GeneDB CDS 990472 990600 . + . mRNA SPAC821.06 ; colour "2" ;
chromosome1 GeneDB CDS 990712 990793 . + . mRNA SPAC821.06 ; colour "2" ;
chromosome1 GeneDB CDS 990856 991525 . + . mRNA SPAC821.06 ; colour "2" ;
chromosome1 GeneDB misc_feature 990290 990295 . + . misc_feature unknown_817 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB intron 990290 990338 . + . intron SPAC821.06 ; Alias "spn2" ; db_xref "SPD:20/20D09" ; systematic_id "SPAC821.06" ; primary_name "spn2" ; gene "spn2 ||| SPAC821.06" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 990326 990338 . + . misc_feature unknown_818 ; colour "6" ; note "ctaatgtttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 990414 990419 . + . misc_feature unknown_819 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 990414 990471 . + . intron SPAC821.06 ; Alias "spn2" ; db_xref "SPD:20/20D09" ; systematic_id "SPAC821.06" ; primary_name "spn2" ; gene "spn2 ||| SPAC821.06" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 990455 990471 . + . misc_feature unknown_820 ; colour "6" ; note "ttaacagtttcaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 990601 990606 . + . misc_feature unknown_821 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 990601 990711 . + . intron SPAC821.06 ; Alias "spn2" ; db_xref "SPD:20/20D09" ; systematic_id "SPAC821.06" ; primary_name "spn2" ; gene "spn2 ||| SPAC821.06" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 990700 990711 . + . misc_feature unknown_822 ; colour "6" ; note "ctaaccacatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 990794 990799 . + . misc_feature unknown_823 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 990794 990855 . + . intron SPAC821.06 ; Alias "spn2" ; db_xref "SPD:20/20D09" ; systematic_id "SPAC821.06" ; primary_name "spn2" ; gene "spn2 ||| SPAC821.06" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 990843 990855 . + . misc_feature unknown_824 ; colour "6" ; note "ctaactataatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 991526 991662 . + . mRNA SPAC821.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC821.06" ; systematic_id "SPAC821.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 991715 991751 . - . mRNA SPAC821.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC821.07c" ; systematic_id "SPAC821.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 991752 993245 . - . mRNA SPAC821.07c ; systematic_id "SPAC821.07c" ; colour "2" ; gene "moc3 ||| SPAC821.07c" ; db_xref "SPD:24/24B03" ; Alias "moc3" ; GO "GO:0005634; nucleus
GO:0005634; nucleus
GO:0031137; regulation of conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0008270; zinc ion binding
GO:0003677; DNA binding
GO:0006974; response to DNA damage stimulus
GO:0071277; cellular response to calcium ion
GO:0033554; cellular response to stress
GO:0030437; sporulation (sensu Fungi)
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16273369; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Multicopy suppressor of Overexpressed Cyr1; cv=name_description; date=20100126" ; primary_name "moc3" ; product "transcription factor Moc3" ;
chromosome1 GeneDB CDS 991752 993245 . - . mRNA SPAC821.07c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 993244 993752 . - . mRNA SPAC821.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC821.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 995070 995475 . - . mRNA SPAC821.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC821.08c" ; systematic_id "SPAC821.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 995476 996942 . - . mRNA SPAC821.08c ; systematic_id "SPAC821.08c" ; colour "2" ; gene "slp1 ||| cdc20 ||| SPAC821.08c" ; Alias "slp1" ; db_xref "SPD:23/23F01" ; synonym "cdc20" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=Cdc20/Fizzy subfamily; date=19700101 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YGL116W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; kinetochore
GO:0033597; mitotic checkpoint complex
GO:0010997; anaphase promoting complex binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007092; anaphase-promoting complex activation during mitotic cell cycle
GO:0034613; cellular protein localization
GO:0000070; mitotic sister chromatid segregation
GO:0007094; mitotic spindle checkpoint
GO:0045842; positive regulation of mitotic metaphase/anaphase transition
GO:0031577; spindle checkpoint" ; primary_name "slp1" ; product "sleepy homolog Slp1" ;
chromosome1 GeneDB CDS 995476 996942 . - . mRNA SPAC821.08c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 996941 997601 . - . mRNA SPAC821.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC821.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 998045 998413 . + . misc_RNA SPNCRNA.163 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.163" ; synonym "SPNG167" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 998646 998952 . + . mRNA SPAC821.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC821.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 998953 1002003 . + . mRNA SPAC821.09 ; systematic_id "SPAC821.09" ; colour "2" ; gene "eng1 ||| SPAC821.09" ; Alias "eng1" ; db_xref "SPD:29/29H08" ; GO "GO:0043187; cell septum surface
GO:0009986; cell surface
GO:0042973; glucan endo-1,3-beta-D-glucosidase activity
GO:0000920; cell separation during cytokinesis
GO:0016998; cell wall catabolism
GO:0009313; oligosaccharide catabolism
GO:0030994; primary cell septum disassembly
GO:0030247; polysaccharide binding
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12665550; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:12665550; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YNR067C and YLR144C; date=19700101 ||| term=localization dependent on septin; date=20080511 ||| term=localization dependent on secretory pathway, exocyst; date=20080511 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=misc, target genes transcriptionally co-regulated by Mcs6; db_xref=PMID:19328067; date=20090712 ||| term=misc, target genes transcriptionally co-regulated by Cdk9; db_xref=PMID:19328067; date=20090712 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "eng1" ; product "endo-1,3-beta-glucanase Eng1" ; EC_number "3.2.1.39" ;
chromosome1 GeneDB CDS 998953 1002003 . + . mRNA SPAC821.09 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1002004 1002276 . + . mRNA SPAC821.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC821.09" ; systematic_id "SPAC821.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1002838 1002998 . - . mRNA SPAC821.10c ; Alias "sod1" ; ID "SPAC821.10c" ; db_xref "SPD:04/04C02" ; systematic_id "SPAC821.10c" ; primary_name "sod1" ; gene "sod1 ||| SPAC821.10c" ; note "mRNA from AU011168" ;
chromosome1 GeneDB CDS_parts 1002999 1003463 . - . mRNA SPAC821.10c ; systematic_id "SPAC821.10c" ; colour "2" ; gene "sod1 ||| SPAC821.10c" ; Alias "sod1" ; db_xref "SPD:04/04C02" ; GO "GO:0005829; cytosol
GO:0005758; mitochondrial intermembrane space
GO:0004784; superoxide dismutase activity
GO:0006878; copper ion homeostasis
GO:0034599; cellular response to oxidative stress
GO:0006882; zinc ion homeostasis
GO:0001320; age-dependent response to reactive oxygen species during chromological cell aging
GO:0071451; cellular response to superoxide
GO:0019430; removal of superoxide radicals
GO:0045454; cell redox homeostasis
GO:0004784; superoxide dismutase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12073089; date=19700101 ||| term=phenotype, growth auxotrophic for cysteine; cv=phenotype; db_xref=PMID:12073089; date=20100121 ||| term=phenotype, growth auxotrophic for methionine; cv=phenotype; db_xref=PMID:12073089; date=20100121 ||| term=phenotype, growth auxotrophic for lysine; cv=phenotype; db_xref=PMID:12073089; date=20100121 ||| term=phenotype, sensitive to menadione; cv=phenotype; db_xref=PMID:12073089; date=20100121 ||| term=phenotype, sensitive to H202; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=phenotype, aerobic growth defects; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=phenotype, accumulation of carbonylated proteins; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=disease associated, amyotrophic lateral sclerosis; date=20060920 ||| term=gene expression, transcriptionally regulated by Pap1; db_xref=PMID:12073089; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YJR104C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=disease associated, neurological disorders; date=20091123 ||| term=disease associated, motor neurone disease; date=20091123" ; primary_name "sod1" ; product "superoxide dismutase Sod1" ; EC_number "1.15.1.1" ;
chromosome1 GeneDB CDS 1002999 1003463 . - . mRNA SPAC821.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1003464 1003544 . - . mRNA SPAC821.10c ; Alias "sod1" ; ID "SPAC821.10c" ; db_xref "EMBL:AB016217" ; systematic_id "SPAC821.10c" ; primary_name "sod1" ; gene "sod1 ||| SPAC821.10c" ;
chromosome1 GeneDB LTR 1004892 1005249 . + . LTR unknown_825 ; note "TF1-type lone LTR" ;
chromosome1 GeneDB misc_RNA 1005499 1005710 . + . misc_RNA SPNCRNA.164 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.164" ; synonym "SPNG168" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 1006290 1006393 . + . mRNA SPAC821.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC821.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1006394 1007749 . + . mRNA SPAC821.11 ; systematic_id "SPAC821.11" ; colour "7" ; gene "pro1 ||| SPAC821.11" ; Alias "pro1" ; db_xref "SPD:21/21A06" ; GO "GO:0004350; glutamate-5-semialdehyde dehydrogenase activity
GO:0006561; proline biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR323C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pro1" ; product "gamma-glutamyl phosphate reductase Pro1 (predicted)" ; EC_number "1.2.1.41" ;
chromosome1 GeneDB CDS 1006394 1007749 . + . mRNA SPAC821.11 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1007750 1007832 . + . mRNA SPAC821.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC821.11" ; systematic_id "SPAC821.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1008270 1008438 . + . mRNA SPAC821.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC821.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1008439 1010160 . + . mRNA SPAC821.12 ; systematic_id "SPAC821.12" ; colour "2" ; gene "orb6 ||| SPAC821.12" ; Alias "orb6" ; db_xref "SPD:45/45F06" ; GO "GO:0051285; cell cortex of cell tip
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0000078; cell morphogenesis checkpoint
GO:0010590; regulation of cell separation during cytokinesis
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO: SF 3077846; regulation of establishment or maintenance of cell polarity resulting in cell shape
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO: SF 3077846 and other annotation; regulation of establishment or maintenance of cell polarity resulting in cell shape
GO:0006468; protein amino acid phosphorylation
GO:0007163; regulation of establishment or maintenance of cell polarity
GO:0007346; regulation of mitotic cell cycle
GO:0071470; cellular response to osmotic stress" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9636183; date=19700101 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:9636183; date=20100731 ||| term=Ndr kinase/myotonic dystrophy kinase/cot1/warts family; date=19700101 ||| term=orthologous to S. cerevisiae YNL161W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "orb6" ; product "serine/threonine protein kinase Orb6" ; EC_number "2.7.11.1" ;
chromosome1 GeneDB CDS 1008439 1008581 . + . mRNA SPAC821.12 ; colour "2" ;
chromosome1 GeneDB CDS 1008849 1009023 . + . mRNA SPAC821.12 ; colour "2" ;
chromosome1 GeneDB CDS 1009069 1010160 . + . mRNA SPAC821.12 ; colour "2" ;
chromosome1 GeneDB misc_feature 1008582 1008587 . + . misc_feature unknown_826 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1008835 1008848 . + . misc_feature unknown_827 ; colour "6" ; note "ctaattctctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1009024 1009029 . + . misc_feature unknown_828 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1009057 1009068 . + . misc_feature unknown_829 ; colour "6" ; note "ctaattaaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1010161 1010251 . + . mRNA SPAC821.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC821.12" ; systematic_id "SPAC821.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1010471 1010639 . - . mRNA SPAC821.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC821.13c" ; systematic_id "SPAC821.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1010640 1015328 . - . mRNA SPAC821.13c ; systematic_id "SPAC821.13c" ; colour "7" ; gene "SPAC821.13c ||| SPAC955.01c" ; db_xref "SPD:48/48G07" ; synonym "SPAC955.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR162C; date=19700101 ||| term=disease associated, cholestasis; date=20080625 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0016021; integral to membrane
GO:0030140; trans-Golgi network transport vesicle
GO:0004012; phospholipid-translocating ATPase activity
GO:0045332; phospholipid translocation" ; product "P-type ATPase (predicted)" ; EC_number "3.6.3.1" ;
chromosome1 GeneDB CDS 1010640 1015328 . - . mRNA SPAC821.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 1012503 1012716 . + . misc_feature unknown_830 ; note "nominal overlap with cosmid SPAC821, EM:AL121770 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 1015327 1015367 . - . mRNA SPAC821.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC821.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 1015475 1015830 . + . misc_RNA SPNCRNA.220 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.220" ; synonym "SPNG169" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 1016103 1016365 . - . mRNA SPAC139.01c ; Alias "SPAC955.02c" ; ID "SPAC139.01c" ; db_xref "SPD:29/29B05" ; systematic_id "SPAC139.01c" ; primary_name "SPAC955.02c" ; gene "SPAC955.02c ||| SPAC139.01c" ; note "mRNA from AU007395" ;
chromosome1 GeneDB CDS_parts 1016366 1018875 . - . mRNA SPAC139.01c ; systematic_id "SPAC139.01c" ; colour "7" ; gene "SPAC955.02c ||| SPAC139.01c" ; Alias "SPAC955.02c" ; db_xref "SPD:29/29B05" ; synonym "SPAC955.02c" ; GO "GO:0004518; nuclease activity
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=XP-G family; date=19700101 ||| term=orthologous to S. cerevisiae YNL085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "SPAC955.02c" ; product "nuclease, XP-G family (predicted)" ;
chromosome1 GeneDB CDS 1016366 1016669 . - . mRNA SPAC139.01c ; colour "7" ;
chromosome1 GeneDB CDS 1016730 1018827 . - . mRNA SPAC139.01c ; colour "7" ;
chromosome1 GeneDB CDS 1018869 1018875 . - . mRNA SPAC139.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 1016670 1016682 . - . misc_feature unknown_831 ; colour "6" ; note "ctaaccaatttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1016670 1016729 . - . intron SPAC139.01c ; Alias "SPAC955.02c" ; db_xref "SPD:29/29B05" ; systematic_id "SPAC139.01c" ; primary_name "SPAC955.02c" ; gene "SPAC955.02c ||| SPAC139.01c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1016724 1016729 . - . misc_feature unknown_832 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1018231 1018460 . + . misc_feature unknown_833 ; note "nominal overlap with cosmid SPAC139, EM:AL132667 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 1018828 1018839 . - . misc_feature unknown_834 ; colour "6" ; note "ctaattttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1018863 1018868 . - . misc_feature unknown_835 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1018876 1019031 . - . mRNA SPAC139.01c ; Alias "SPAC955.02c" ; ID "SPAC139.01c" ; systematic_id "SPAC139.01c" ; primary_name "SPAC955.02c" ; gene "SPAC955.02c ||| SPAC139.01c" ; note "mRNA from AU012553" ;
chromosome1 GeneDB 3'-UTR 1019248 1019611 . - . mRNA SPAC139.02c ; ID "SPAC139.02c" ; db_xref "SPD:13/13F07" ; systematic_id "SPAC139.02c" ; gene "SPAC139.02c ||| oac1" ; note "mRNA from AU011236" ;
chromosome1 GeneDB CDS_parts 1019612 1020574 . - . mRNA SPAC139.02c ; systematic_id "SPAC139.02c" ; colour "7" ; gene "SPAC139.02c ||| oac1" ; Alias "oac1" ; db_xref "SPD:13/13F07" ; GO "GO:0000227; oxaloacetate carrier activity
GO:0008271; sulfate porter activity
GO:0015729; oxaloacetate transport
GO:0008272; sulfate transport
GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL120W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=19700101" ; primary_name "oac1" ; product "mitochondrial anion transporter (predicted)" ;
chromosome1 GeneDB CDS 1019612 1020574 . - . mRNA SPAC139.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1020573 1020646 . - . mRNA SPAC139.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC139.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1021690 1021916 . + . mRNA SPAC139.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC139.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1021917 1023874 . + . mRNA SPAC139.03 ; db_xref "SPD:27/27A07" ; systematic_id "SPAC139.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC139.03" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome1 GeneDB CDS 1021917 1022807 . + . mRNA SPAC139.03 ; colour "7" ;
chromosome1 GeneDB CDS 1022847 1023794 . + . mRNA SPAC139.03 ; colour "7" ;
chromosome1 GeneDB CDS 1023836 1023874 . + . mRNA SPAC139.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 1022808 1022813 . + . misc_feature unknown_836 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1022833 1022846 . + . misc_feature unknown_837 ; colour "6" ; note "ctaactcaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1023795 1023800 . + . misc_feature unknown_838 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1023822 1023835 . + . misc_feature unknown_839 ; colour "6" ; note "ctaacaactgctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1023875 1024112 . + . mRNA SPAC139.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC139.03" ; systematic_id "SPAC139.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1024168 1024175 . - . mRNA SPAC139.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC139.04c" ; systematic_id "SPAC139.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1024176 1025477 . - . mRNA SPAC139.04c ; systematic_id "SPAC139.04c" ; colour "2" ; gene "fap2 ||| SPAC139.04c" ; Alias "fap2" ; db_xref "SPD:44/44B12" ; GO "GO:0051698; saccharopine oxidase activity
GO:0019477; L-lysine catabolism
GO:0050660; FAD binding
GO:0051700; fructosyl-amino acid oxidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fap2" ; product "L-saccharopine oxidase" ;
chromosome1 GeneDB CDS 1024176 1025477 . - . mRNA SPAC139.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1025476 1025761 . - . mRNA SPAC139.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC139.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1028316 1029797 . + . mRNA SPAC139.05 ; db_xref "SPD:23/23H06" ; systematic_id "SPAC139.05" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, 4- hydroxybutyricaciduria; date=20060920 ||| term=orthologous to S. cerevisiae YBR006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0009013; succinate-semialdehyde dehydrogenase [NAD(P)+] activity
GO:0006538; glutamate catabolism" ; gene "SPAC139.05" ; product "succinate-semialdehyde dehydrogenase (predicted)" ; EC_number "1.2.1.16" ;
chromosome1 GeneDB CDS 1028316 1029797 . + . mRNA SPAC139.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1029798 1029887 . + . mRNA SPAC139.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC139.05" ; systematic_id "SPAC139.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1030215 1030229 . + . mRNA SPAC139.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC139.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1030230 1031693 . + . mRNA SPAC139.06 ; systematic_id "SPAC139.06" ; colour "2" ; gene "hat1 ||| SPAC139.06 ||| SPAC23C4.01" ; note "PMID:17052979 is pending curation" ; Alias "hat1" ; db_xref "SPD:44/44G05" ; synonym "SPAC23C4.01 ||| kat1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0000123; histone acetyltransferase complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0004402; histone acetyltransferase activity
GO:0006342; chromatin silencing
GO:0016573; histone acetylation
GO:0006302; double-strand break repair" ; primary_name "hat1" ; product "histone acetyltransferase Hat1" ; EC_number "2.3.1.48" ;
chromosome1 GeneDB CDS 1030230 1030287 . + . mRNA SPAC139.06 ; colour "2" ;
chromosome1 GeneDB CDS 1030338 1030441 . + . mRNA SPAC139.06 ; colour "2" ;
chromosome1 GeneDB CDS 1030503 1030721 . + . mRNA SPAC139.06 ; colour "2" ;
chromosome1 GeneDB CDS 1030811 1030926 . + . mRNA SPAC139.06 ; colour "2" ;
chromosome1 GeneDB CDS 1030998 1031361 . + . mRNA SPAC139.06 ; colour "2" ;
chromosome1 GeneDB CDS 1031418 1031693 . + . mRNA SPAC139.06 ; colour "2" ;
chromosome1 GeneDB misc_feature 1030288 1030293 . + . misc_feature unknown_840 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1030324 1030337 . + . misc_feature unknown_841 ; colour "6" ; note "ttaacacctgtcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1030442 1030447 . + . misc_feature unknown_842 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1030476 1030502 . + . misc_feature unknown_843 ; colour "6" ; note "ttgattgcaaatagtaacagttattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1030722 1030727 . + . misc_feature unknown_844 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1030787 1030810 . + . misc_feature unknown_845 ; colour "6" ; note "ctaataatcgtaatgtattaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1030901 1031000 . + . misc_feature unknown_846 ; note "nominal overlap with cosmid SPAC139 and cosmid SPAC23C4" ;
chromosome1 GeneDB misc_feature 1030927 1030932 . + . misc_feature unknown_847 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1030984 1030997 . + . misc_feature unknown_848 ; colour "6" ; note "ttaacaaaaataag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1031362 1031367 . + . misc_feature unknown_849 ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1031400 1031417 . + . misc_feature unknown_850 ; note "ctaattgtctttttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1031694 1031921 . + . mRNA SPAC139.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC139.06" ; systematic_id "SPAC139.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1032085 1032181 . + . mRNA SPAC23C4.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1032182 1034167 . + . mRNA SPAC23C4.02 ; systematic_id "SPAC23C4.02" ; colour "2" ; gene "crn1 ||| SPAC23C4.02" ; db_xref "SPD:46/46C04" ; Alias "crn1" ; GO "GO:0030036; actin cytoskeleton organization and biogenesis
GO:0003779; actin binding
GO:0030479; actin cortical patch
GO:0030041; actin filament polymerization
GO:0051017; actin filament bundle formation
GO:0005826; contractile ring" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=coronin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11231572; date=19700101 ||| term=orthologous to S. cerevisiae YLR429W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "crn1" ; product "actin binding protein, coronin Crn1" ;
chromosome1 GeneDB CDS 1032182 1032215 . + . mRNA SPAC23C4.02 ; colour "2" ;
chromosome1 GeneDB CDS 1032258 1032310 . + . mRNA SPAC23C4.02 ; colour "2" ;
chromosome1 GeneDB CDS 1032359 1032586 . + . mRNA SPAC23C4.02 ; colour "2" ;
chromosome1 GeneDB CDS 1032628 1032716 . + . mRNA SPAC23C4.02 ; colour "2" ;
chromosome1 GeneDB CDS 1032766 1034167 . + . mRNA SPAC23C4.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 1032216 1032221 . + . misc_feature unknown_851 ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1032248 1032257 . + . misc_feature unknown_852 ; note "ctgacgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1032311 1032316 . + . misc_feature unknown_853 ; note "gttggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1032342 1032358 . + . misc_feature unknown_854 ; note "ctaattgtcttcaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1032587 1032592 . + . misc_feature unknown_855 ; note "gtatcc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1032616 1032627 . + . misc_feature unknown_856 ; note "ttaacgaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1032717 1032722 . + . misc_feature unknown_857 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1032749 1032765 . + . misc_feature unknown_858 ; note "ctgacttttttgtatag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 1034296 1035762 . + . mRNA SPAC23C4.03 ; systematic_id "SPAC23C4.03" ; colour "2" ; gene "SPAC23C4.03" ; Alias "hrk1" ; db_xref "SPD:23/23F02" ; GO "GO:0031934; mating-type region heterochromatin
GO:0031618; nuclear centromeric heterochromatin
GO:0005634; nucleus
GO:0031933; telomeric heterochromatin
GO:0005524; ATP binding
GO:0072354; histone kinase activity (H3-T3) specific
GO:0005515; protein binding
GO:0005515; protein binding
GO:0072356; chromosome passenger complex localization to kinetochore
GO:0072355; histone H3-T3 phosphorylation
GO:0000070; mitotic sister chromatid segregation
GO:0034501; protein localization to kinetochore" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL021W and YBL009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; qualifier=predicted; evidence=ISS; cv=pt_mod; date=20091211 ||| term=human GSG2 ortholog; date=20100704 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902 ||| term=target is Hht1; qualifier=phosphorylates; db_xref=PMID:20929775; date=20101115 ||| term=target is Hht2; qualifier=phosphorylates; db_xref=PMID:20929775; date=20101115 ||| term=target is Hht3; qualifier=phosphorylates; db_xref=PMID:20929775; date=20101115" ; primary_name "hrk1" ; product "haspin related kinase Hrk1" ;
chromosome1 GeneDB CDS 1034296 1035762 . + . mRNA SPAC23C4.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1035763 1035992 . + . mRNA SPAC23C4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C4.03" ; systematic_id "SPAC23C4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1036033 1036508 . + . mRNA SPAC23C4.04c ; systematic_id "SPAC23C4.04c" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; colour "8" ; gene "SPAC23C4.04c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1036033 1036343 . + . mRNA SPAC23C4.04c ; colour "8" ;
chromosome1 GeneDB CDS 1036397 1036508 . + . mRNA SPAC23C4.04c ; colour "8" ;
chromosome1 GeneDB 3'-UTR 1036639 1036832 . - . mRNA SPAC23C4.05c ; ID "SPAC23C4.05c" ; db_xref "SPD:20/20H06" ; systematic_id "SPAC23C4.05c" ; gene "SPAC23C4.05c" ; note "mRNA from AU008952" ;
chromosome1 GeneDB CDS_parts 1036833 1038182 . - . mRNA SPAC23C4.05c ; db_xref "SPD:20/20H06" ; systematic_id "SPAC23C4.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML128C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC23C4.05c" ; product "LEA domain protein" ;
chromosome1 GeneDB CDS 1036833 1038061 . - . mRNA SPAC23C4.05c ; colour "10" ;
chromosome1 GeneDB CDS 1038116 1038182 . - . mRNA SPAC23C4.05c ; colour "10" ;
chromosome1 GeneDB misc_feature 1038062 1038080 . - . misc_feature unknown_859 ; note "ctgacccggcattgtctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1038110 1038115 . - . misc_feature unknown_860 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1038181 1038192 . - . mRNA SPAC23C4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1038666 1039649 . - . mRNA SPAC23C4.06c ; db_xref "SPD:43/43F08" ; systematic_id "SPAC23C4.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity" ; gene "SPAC23C4.06c" ; product "methyltransferase (predicted)" ;
chromosome1 GeneDB CDS 1038666 1039649 . - . mRNA SPAC23C4.06c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 1039648 1039787 . - . mRNA SPAC23C4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1040241 1040846 . + . mRNA SPAC23C4.07 ; systematic_id "SPAC23C4.07" ; colour "2" ; gene "tht2 ||| mug22 ||| SPAC23C4.07" ; Alias "tht2" ; db_xref "SPD:06/06G03" ; synonym "mug22" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0000742; karyogamy during conjugation with cellular fusion" ; primary_name "tht2" ; product "meiotically upregulated gene Mug22" ;
chromosome1 GeneDB CDS 1040241 1040846 . + . mRNA SPAC23C4.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 1041404 1041409 . + . misc_feature unknown_861 ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1041491 1041534 . + . mRNA SPAC23C4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1041535 1042550 . + . mRNA SPAC23C4.08 ; systematic_id "SPAC23C4.08" ; colour "2" ; gene "rho3 ||| SPAC23C4.08" ; db_xref "SPD:18/18D04" ; Alias "rho3" ; GO "GO:0005525; GTP binding
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0005515; protein binding
GO:0003924; GTPase activity
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0010590; regulation of cell separation during cytokinesis
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0007264; small GTPase mediated signal transduction
GO:0017157; regulation of exocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Rho family; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YIL118W; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; residue=202-205; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090426" ; primary_name "rho3" ; product "Rho family GTPase Rho3" ;
chromosome1 GeneDB CDS 1041535 1041598 . + . mRNA SPAC23C4.08 ; colour "2" ;
chromosome1 GeneDB CDS 1041673 1041745 . + . mRNA SPAC23C4.08 ; colour "2" ;
chromosome1 GeneDB CDS 1042070 1042550 . + . mRNA SPAC23C4.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 1041599 1041604 . + . misc_feature unknown_862 ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB intron 1041599 1041672 . + . intron SPAC23C4.08 ; Alias "rho3" ; db_xref "SPD:18/18D04" ; systematic_id "SPAC23C4.08" ; primary_name "rho3" ; gene "rho3 ||| SPAC23C4.08" ; note "confirmed, PMID:12653963" ;
chromosome1 GeneDB misc_feature 1041656 1041672 . + . misc_feature unknown_863 ; note "ctaaccgtaaattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1041746 1041751 . + . misc_feature unknown_864 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1041746 1042069 . + . intron SPAC23C4.08 ; Alias "rho3" ; db_xref "SPD:18/18D04" ; systematic_id "SPAC23C4.08" ; primary_name "rho3" ; gene "rho3 ||| SPAC23C4.08" ; note "confirmed, PMID:12653963" ;
chromosome1 GeneDB misc_feature 1042053 1042069 . + . misc_feature unknown_865 ; note "ctaacacctaaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1042551 1043033 . + . mRNA SPAC23C4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C4.08" ; systematic_id "SPAC23C4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1043088 1043219 . - . mRNA SPAC23C4.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C4.09c" ; systematic_id "SPAC23C4.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1043220 1044074 . - . mRNA SPAC23C4.09c ; db_xref "SPD:11/11C04" ; systematic_id "SPAC23C4.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003690; double-stranded DNA binding" ; gene "SPAC23C4.09c" ; product "DNA-binding TFAR19-related protein (predicted)" ;
chromosome1 GeneDB CDS 1043220 1043264 . - . mRNA SPAC23C4.09c ; colour "7" ;
chromosome1 GeneDB CDS 1043382 1043512 . - . mRNA SPAC23C4.09c ; colour "7" ;
chromosome1 GeneDB CDS 1043596 1043671 . - . mRNA SPAC23C4.09c ; colour "7" ;
chromosome1 GeneDB CDS 1043720 1043789 . - . mRNA SPAC23C4.09c ; colour "7" ;
chromosome1 GeneDB CDS 1044001 1044074 . - . mRNA SPAC23C4.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 1043265 1043280 . - . misc_feature unknown_866 ; note "ttaactgtttaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1043376 1043381 . - . misc_feature unknown_867 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1043513 1043525 . - . misc_feature unknown_868 ; note "ctaatttgtgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1043590 1043595 . - . misc_feature unknown_869 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1043672 1043687 . - . misc_feature unknown_870 ; note "ctaacaatttcataag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1043714 1043719 . - . misc_feature unknown_871 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1043790 1043802 . - . misc_feature unknown_872 ; note "ttaacaaatctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1043995 1044000 . - . misc_feature unknown_873 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1044073 1044132 . - . mRNA SPAC23C4.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 1044522 1044860 . + . LTR unknown_874 ; note "Tf2-type LTR" ;
chromosome1 GeneDB 5'-UTR 1044955 1044994 . + . mRNA SPAC23C4.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1044995 1046578 . + . mRNA SPAC23C4.10 ; systematic_id "SPAC23C4.10" ; colour "7" ; gene "sec2 ||| SPAC23C4.10" ; Alias "sec2" ; db_xref "SPD:25/25E02" ; GO "GO:0005085; guanyl-nucleotide exchange factor activity
GO:0006886; intracellular protein transport
GO:0006887; exocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL272C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "sec2" ; product "guanyl-nucleotide exchange factor Sec2 (predicted)" ;
chromosome1 GeneDB CDS 1044995 1046578 . + . mRNA SPAC23C4.10 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1046579 1046660 . + . mRNA SPAC23C4.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C4.10" ; systematic_id "SPAC23C4.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1047267 1047315 . + . mRNA SPAC23C4.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1047316 1047591 . + . mRNA SPAC23C4.11 ; systematic_id "SPAC23C4.11" ; colour "7" ; gene "atp18 ||| SPAC23C4.11" ; Alias "atp18" ; db_xref "SPD:01/01C05" ; GO "GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0016021; integral to membrane
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YML081C-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "atp18" ; product "F0-ATPase subunit J (predicted)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB CDS 1047316 1047385 . + . mRNA SPAC23C4.11 ; colour "7" ;
chromosome1 GeneDB CDS 1047435 1047485 . + . mRNA SPAC23C4.11 ; colour "7" ;
chromosome1 GeneDB CDS 1047530 1047591 . + . mRNA SPAC23C4.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 1047386 1047391 . + . misc_feature unknown_875 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 1047386 1047434 . + . intron SPAC23C4.11 ; Alias "atp18" ; db_xref "SPD:01/01C05" ; systematic_id "SPAC23C4.11" ; primary_name "atp18" ; gene "atp18 ||| SPAC23C4.11" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1047418 1047434 . + . misc_feature unknown_876 ; note "ttaacatgtcttgacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1047486 1047491 . + . misc_feature unknown_877 ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 1047486 1047529 . + . intron SPAC23C4.11 ; Alias "atp18" ; db_xref "SPD:01/01C05" ; systematic_id "SPAC23C4.11" ; primary_name "atp18" ; gene "atp18 ||| SPAC23C4.11" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1047516 1047529 . + . misc_feature unknown_878 ; note "ttaactctatgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1047592 1047654 . + . mRNA SPAC23C4.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C4.11" ; systematic_id "SPAC23C4.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1049005 1049034 . + . mRNA SPAC23C4.12 ; Alias "hhp2" ; ID "SPAC23C4.12" ; db_xref "EMBL:X78872" ; systematic_id "SPAC23C4.12" ; gene "hhp2 ||| SPAC23C4.12" ; primary_name "hhp2" ;
chromosome1 GeneDB CDS_parts 1049035 1050489 . + . mRNA SPAC23C4.12 ; systematic_id "SPAC23C4.12" ; colour "2" ; gene "hhp2 ||| SPAC23C4.12" ; Alias "hhp2" ; db_xref "SPD:23/23D12" ; GO "GO:0033551; monopolin complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006282; regulation of DNA repair
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0045143; homologous chromosome segregation
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=casein kinase I subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YPL204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "hhp2" ; product "serine/threonine protein kinase Hhp2" ;
chromosome1 GeneDB CDS 1049035 1049198 . + . mRNA SPAC23C4.12 ; colour "2" ;
chromosome1 GeneDB CDS 1049365 1050088 . + . mRNA SPAC23C4.12 ; colour "2" ;
chromosome1 GeneDB CDS 1050175 1050489 . + . mRNA SPAC23C4.12 ; colour "2" ;
chromosome1 GeneDB misc_feature 1049199 1049204 . + . misc_feature unknown_879 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1049199 1049364 . + . intron SPAC23C4.12 ; Alias "hhp2" ; db_xref "EMBL:X78872 ||| SPD:23/23D12" ; systematic_id "SPAC23C4.12" ; gene "hhp2 ||| SPAC23C4.12" ; primary_name "hhp2" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1049354 1049364 . + . misc_feature unknown_880 ; note "ctaacatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1050089 1050094 . + . misc_feature unknown_881 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1050089 1050174 . + . intron SPAC23C4.12 ; Alias "hhp2" ; db_xref "EMBL:X78872 ||| SPD:23/23D12" ; systematic_id "SPAC23C4.12" ; gene "hhp2 ||| SPAC23C4.12" ; primary_name "hhp2" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1050161 1050174 . + . misc_feature unknown_882 ; note "ctaactattattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1050490 1051118 . + . mRNA SPAC23C4.12 ; Alias "hhp2" ; ID "SPAC23C4.12" ; db_xref "EMBL:X78872 ||| SPD:23/23D12" ; systematic_id "SPAC23C4.12" ; gene "hhp2 ||| SPAC23C4.12" ; primary_name "hhp2" ;
chromosome1 GeneDB 5'-UTR 1051720 1051728 . + . mRNA SPAC23C4.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1051729 1052174 . + . mRNA SPAC23C4.13 ; systematic_id "SPAC23C4.13" ; colour "7" ; gene "bet1 ||| SPAC23C4.13" ; Alias "bet1" ; db_xref "SPD:03/03G12" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005484; SNAP receptor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bet1" ; product "SNARE Bet1 (predicted)" ;
chromosome1 GeneDB CDS 1051729 1051739 . + . mRNA SPAC23C4.13 ; colour "7" ;
chromosome1 GeneDB CDS 1051783 1051921 . + . mRNA SPAC23C4.13 ; colour "7" ;
chromosome1 GeneDB CDS 1051971 1052174 . + . mRNA SPAC23C4.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 1051740 1051745 . + . misc_feature unknown_883 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1051768 1051782 . + . misc_feature unknown_884 ; note "ctaactaatcattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1051922 1051927 . + . misc_feature unknown_885 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1051958 1051970 . + . misc_feature unknown_886 ; note "ctaattttaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1052175 1052656 . + . mRNA SPAC23C4.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C4.13" ; systematic_id "SPAC23C4.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1052875 1052983 . + . mRNA SPAC23C4.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1052984 1054468 . + . mRNA SPAC23C4.14 ; systematic_id "SPAC23C4.14" ; colour "7" ; gene "alg1 ||| SPAC23C4.14" ; Alias "alg1" ; db_xref "SPD:23/23H11" ; GO "GO:0006487; protein amino acid N-linked glycosylation
GO:0019187; beta-1,4-mannosyltransferase activity
GO:0006490; oligosaccharide-lipid intermediate assembly
GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR110W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "alg1" ; product "mannosyltransferase complex subunit Alg1 (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB CDS 1052984 1053167 . + . mRNA SPAC23C4.14 ; colour "7" ;
chromosome1 GeneDB CDS 1053244 1053676 . + . mRNA SPAC23C4.14 ; colour "7" ;
chromosome1 GeneDB CDS 1053720 1054254 . + . mRNA SPAC23C4.14 ; colour "7" ;
chromosome1 GeneDB CDS 1054346 1054468 . + . mRNA SPAC23C4.14 ; colour "7" ;
chromosome1 GeneDB misc_feature 1053168 1053173 . + . misc_feature unknown_887 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1053195 1053213 . + . misc_feature unknown_888 ; note "ttaatctataccacattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1053677 1053682 . + . misc_feature unknown_889 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1053706 1053719 . + . misc_feature unknown_890 ; note "ctaacattttcaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1054255 1054260 . + . misc_feature unknown_891 ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1054333 1054345 . + . misc_feature unknown_892 ; note "ctaactgttttag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 1054735 1055642 . + . mRNA SPAC23C4.15 ; systematic_id "SPAC23C4.15" ; colour "2" ; gene "rpb5 ||| SPAC23C4.15" ; Alias "rpb5" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:12/12E06" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
; DNA-directed RNA polymerase III complex
GO:0003899
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006360; transcription from RNA polymerase I promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0006383; transcription from RNA polymerase III promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YBR154C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpb5" ; product "DNA-directed RNA polymerase I, II and III subunit Rpb5" ;
chromosome1 GeneDB CDS 1054735 1054809 . + . mRNA SPAC23C4.15 ; colour "2" ;
chromosome1 GeneDB CDS 1054874 1054956 . + . mRNA SPAC23C4.15 ; colour "2" ;
chromosome1 GeneDB CDS 1055168 1055642 . + . mRNA SPAC23C4.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 1054810 1054815 . + . misc_feature unknown_893 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 1054810 1054873 . + . intron SPAC23C4.15 ; Alias "rpb5" ; db_xref "SPD:12/12E06" ; systematic_id "SPAC23C4.15" ; primary_name "rpb5" ; gene "rpb5 ||| SPAC23C4.15" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1054853 1054873 . + . misc_feature unknown_894 ; note "ttaacaactattataacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1054957 1054962 . + . misc_feature unknown_895 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 1054957 1055167 . + . intron SPAC23C4.15 ; Alias "rpb5" ; db_xref "SPD:12/12E06" ; systematic_id "SPAC23C4.15" ; primary_name "rpb5" ; gene "rpb5 ||| SPAC23C4.15" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1055155 1055167 . + . misc_feature unknown_896 ; note "ctaatgcgtttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1055643 1055845 . + . mRNA SPAC23C4.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C4.15" ; systematic_id "SPAC23C4.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1055957 1056140 . - . mRNA SPAC23C4.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C4.16c" ; systematic_id "SPAC23C4.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1056141 1057415 . - . mRNA SPAC23C4.16c ; systematic_id "SPAC23C4.16c" ; colour "2" ; db_xref "SPD:20/20D06" ; Alias "atg15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR068W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=phenotype, sporulation defects; db_xref=PMID:19778961; cv=phenotype; date=20091126" ; GO "GO:0016298; lipase activity
GO:0030397; membrane disassembly
GO:0005775; vacuolar lumen
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0030437; ascospore formation" ; primary_name "atg15" ; product "autophagy associated lipase Atg15" ;
chromosome1 GeneDB CDS 1056141 1057415 . - . mRNA SPAC23C4.16c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1057414 1057550 . - . mRNA SPAC23C4.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1058375 1058394 . + . mRNA SPAC23C4.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1058395 1060674 . + . mRNA SPAC23C4.17 ; db_xref "SPD:28/28B11" ; systematic_id "SPAC23C4.17" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016428; tRNA (cytosine-5-)-methyltransferase activity
GO:0030488; tRNA methylation
GO:0005634; nucleus" ; gene "SPAC23C4.17" ; product "tRNA (cytosine-5-)-methyltransferase (predicted)" ; EC_number "2.1.1.29" ;
chromosome1 GeneDB CDS 1058395 1058415 . + . mRNA SPAC23C4.17 ; colour "7" ;
chromosome1 GeneDB CDS 1058465 1058514 . + . mRNA SPAC23C4.17 ; colour "7" ;
chromosome1 GeneDB CDS 1058623 1059777 . + . mRNA SPAC23C4.17 ; colour "7" ;
chromosome1 GeneDB CDS 1059838 1060104 . + . mRNA SPAC23C4.17 ; colour "7" ;
chromosome1 GeneDB CDS 1060143 1060674 . + . mRNA SPAC23C4.17 ; colour "7" ;
chromosome1 GeneDB misc_feature 1058416 1058421 . + . misc_feature unknown_897 ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1058452 1058464 . + . misc_feature unknown_898 ; note "ttaacaaagatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1058515 1058520 . + . misc_feature unknown_899 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1058612 1058622 . + . misc_feature unknown_900 ; note "ctaacatgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1059778 1059783 . + . misc_feature unknown_901 ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1059823 1059837 . + . misc_feature unknown_902 ; note "ctaatctcttaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1060105 1060110 . + . misc_feature unknown_903 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1060132 1060142 . + . misc_feature unknown_904 ; note "ctaacccatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1060675 1061071 . + . mRNA SPAC23C4.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C4.17" ; systematic_id "SPAC23C4.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1060686 1060791 . - . mRNA SPAC23C4.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C4.18c" ; systematic_id "SPAC23C4.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1060792 1062861 . - . mRNA SPAC23C4.18c ; systematic_id "SPAC23C4.18c" ; colour "2" ; gene "SPAC23C4.18c" ; Alias "rad4" ; db_xref "SPD:27/27F12" ; synonym "cut5 ||| dre3 ||| dpb11" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000077; DNA damage checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0071163; DNA replication preinitiation complex assembly
GO:0031574; S-M checkpoint" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; date=19700101 ||| term=orthologous to S. cerevisiae YJL090C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Defect in REreplication; db_xref=PMID:15466421; cv=name_description; date=20091118 ||| term=phenotype, cut; cv=phenotype; date=20091118" ; primary_name "rad4" ; product "BRCT domain protein Rad4" ;
chromosome1 GeneDB CDS 1060792 1062564 . - . mRNA SPAC23C4.18c ; colour "2" ;
chromosome1 GeneDB CDS 1062631 1062738 . - . mRNA SPAC23C4.18c ; colour "2" ;
chromosome1 GeneDB CDS 1062796 1062861 . - . mRNA SPAC23C4.18c ; colour "2" ;
chromosome1 GeneDB misc_feature 1062565 1062583 . - . misc_feature unknown_905 ; note "ctgacattcttttcaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1062625 1062630 . - . misc_feature unknown_906 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1062739 1062750 . - . misc_feature unknown_907 ; note "ctaacttgacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1062790 1062795 . - . misc_feature unknown_908 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1062860 1062889 . - . mRNA SPAC23C4.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 1063021 1063448 . + . misc_RNA SPNCRNA.166 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.166" ; synonym "SPNG177" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 1063765 1063866 . + . mRNA SPAC23C4.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C4.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1063867 1066839 . + . mRNA SPAC23C4.19 ; systematic_id "SPAC23C4.19" ; colour "2" ; gene "spt5 ||| SPAC23C4.19" ; Alias "spt5" ; db_xref "SPD:47/47F06" ; GO "GO:0034243; regulation of RNA elongation from RNA polymerase II promoter
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0034244; negative regulation of RNA elongation from RNA polymerase II promoter
GO:0032044; DSIF complex
GO:0006397; mRNA processing
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11893740; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=orthologous to S. cerevisiae YML010W; date=19700101 ||| term=modification, phosphorylated; qualifier=in_vitro; cv=pt_mod; evidence=IDA; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; qualifier=in_vitro; cv=pt_mod; evidence=IDA; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Cdk9; qualifier=in_vitro|phosphorylated_by; db_xref=PMID:19328067; date=20100923 ||| term=target of Msc6; qualifier=in_vitro|phosphorylated_by; db_xref=PMID:19328067; date=20100923" ; primary_name "spt5" ; product "transcription elongation factor Spt5" ;
chromosome1 GeneDB CDS 1063867 1066839 . + . mRNA SPAC23C4.19 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1066840 1066900 . + . mRNA SPAC23C4.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C4.19" ; systematic_id "SPAC23C4.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1067031 1068452 . - . mRNA SPAC1A6.01c ; systematic_id "SPAC1A6.01c" ; colour "7" ; gene "SPAC23C4.20c ||| SPAC1A6.01c" ; Alias "SPAC23C4.20c" ; db_xref "SPD:44/44E10" ; synonym "SPAC23C4.20c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C2HC5 type; date=19700101 ||| term=orthologous to S. cerevisiae YKR023W; date=19700101 ||| term=zinc finger protein; date=20080527 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TRIP-4 ortholog; date=20091107 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0008270; zinc ion binding
GO:0032569; gene specific transcription from RNA polymerase II promoter
GO:0005634; nucleus
GO:0003713; trancription coactivator activity" ; primary_name "SPAC23C4.20c" ; product "human thyroid receptor interacting protein homolog, transcription coactivator (predicted)" ;
chromosome1 GeneDB CDS 1067031 1067718 . - . mRNA SPAC1A6.01c ; colour "7" ;
chromosome1 GeneDB CDS 1067773 1068452 . - . mRNA SPAC1A6.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 1067719 1067732 . - . misc_feature unknown_909 ; note "ctaatcttaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1067767 1067772 . - . misc_feature unknown_910 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1068151 1069169 . + . misc_feature unknown_911 ; note "nominal overlap with cosmid SPAC23C4 and cosmid SPAC1A6" ;
chromosome1 GeneDB 5'-UTR 1068451 1068660 . - . mRNA SPAC1A6.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1A6.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1068660 1068730 . + . mRNA SPAC1A6.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1A6.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1068731 1069816 . + . mRNA SPAC1A6.02 ; systematic_id "SPAC1A6.02" ; colour "7" ; gene "SPAC23C4.21 ||| SPAC1A6.02" ; Alias "SPAC23C4.21" ; db_xref "SPD:16/16H04" ; synonym "SPAC23C4.21" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR169W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0042274; ribosome small subunit biogenesis" ; primary_name "SPAC23C4.21" ; product "WD repeat protein, human WDR55 family, involved in ribosome biogenesis (predicted)" ;
chromosome1 GeneDB CDS 1068731 1069816 . + . mRNA SPAC1A6.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1069817 1069982 . + . mRNA SPAC1A6.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1A6.02" ; systematic_id "SPAC1A6.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1070061 1072013 . - . mRNA SPAC1A6.03c ; db_xref "SPD:26/26D01" ; systematic_id "SPAC1A6.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104 ||| term=warning, gene structure updated; date=20030422" ; GO "GO:0004620; phospholipase activity
GO:0046475; glycerophospholipid catabolism
GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region" ; gene "SPAC1A6.03c" ; product "phospholipase (predicted)" ; EC_number "3.1.1.5" ;
chromosome1 GeneDB CDS 1070061 1070138 . - . mRNA SPAC1A6.03c ; colour "7" ;
chromosome1 GeneDB CDS 1070205 1072013 . - . mRNA SPAC1A6.03c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1072014 1072343 . - . mRNA SPAC1A6.03c ; ID "SPAC1A6.03c" ; systematic_id "SPAC1A6.03c" ; gene "SPAC1A6.03c" ; note "mRNA from AU011416" ;
chromosome1 GeneDB CDS_parts 1073534 1073854 . + . mRNA SPAC1A6.11 ; db_xref "SPD:51/51G05" ; systematic_id "SPAC1A6.11" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPAC1A6.11" ; product "dubious" ;
chromosome1 GeneDB CDS 1073534 1073854 . + . mRNA SPAC1A6.11 ; colour "6" ;
chromosome1 GeneDB 3'-UTR 1074331 1074776 . - . mRNA SPAC1A6.04c ; Alias "plb1" ; ID "SPAC1A6.04c" ; db_xref "SPD:36/36G12" ; systematic_id "SPAC1A6.04c" ; primary_name "plb1" ; gene "plb1 ||| SPAC1A6.04c" ; note "mRNA from AU010125" ;
chromosome1 GeneDB CDS_parts 1074777 1076618 . - . mRNA SPAC1A6.04c ; systematic_id "SPAC1A6.04c" ; colour "2" ; gene "plb1 ||| SPAC1A6.04c" ; Alias "plb1" ; db_xref "SPD:36/36G12" ; GO "GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region
GO:0004622; lysophospholipase activity
GO:0046475; glycerophospholipid catabolism
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0031670; cellular response to nutrient
GO:0071470; cellular response to osmotic stress
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "plb1" ; product "phospholipase B homolog Plb1" ; EC_number "3.1.1.5" ;
chromosome1 GeneDB CDS 1074777 1076618 . - . mRNA SPAC1A6.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1076617 1077518 . - . mRNA SPAC1A6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1A6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1079938 1080020 . - . mRNA SPAC1A6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1A6.05c" ; systematic_id "SPAC1A6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1080021 1081561 . - . mRNA SPAC1A6.05c ; db_xref "SPD:44/44H09" ; systematic_id "SPAC1A6.05c" ; colour "7" ; GO "GO:0004806; triacylglycerol lipase activity
GO:0005811; lipid particle
GO:0019433; triacylglycerol catabolism
GO:0006642; triacylglycerol mobilization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR089C and YOR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC1A6.05c" ; product "triacylglycerol lipase (predicted)" ; EC_number "3.1.1.3" ;
chromosome1 GeneDB CDS 1080021 1080606 . - . mRNA SPAC1A6.05c ; colour "7" ;
chromosome1 GeneDB CDS 1080659 1081433 . - . mRNA SPAC1A6.05c ; colour "7" ;
chromosome1 GeneDB CDS 1081471 1081561 . - . mRNA SPAC1A6.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 1080607 1080623 . - . misc_feature unknown_912 ; note "ctaataagcccttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1080653 1080658 . - . misc_feature unknown_913 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1081434 1081446 . - . misc_feature unknown_914 ; note "ctaatggaaccag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1081465 1081470 . - . misc_feature unknown_915 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1081560 1081587 . - . mRNA SPAC1A6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1A6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1082474 1082782 . - . mRNA SPAC1A6.06c ; ID "SPAC1A6.06c" ; db_xref "SPD:42/42D08 ||| EMBL:AB054315" ; systematic_id "SPAC1A6.06c" ;
chromosome1 GeneDB CDS_parts 1082783 1083391 . - . mRNA SPAC1A6.06c ; Alias "meu31" ; db_xref "SPD:42/42D08" ; systematic_id "SPAC1A6.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "meu31" ; product "sequence orphan Meu31" ;
chromosome1 GeneDB CDS 1082783 1083142 . - . mRNA SPAC1A6.06c ; colour "8" ;
chromosome1 GeneDB CDS 1083194 1083391 . - . mRNA SPAC1A6.06c ; colour "8" ;
chromosome1 GeneDB misc_feature 1083143 1083157 . - . misc_feature unknown_916 ; note "ttaactaatgtaaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 1083143 1083193 . - . intron SPAC1A6.06c ; db_xref "SPD:42/42D08" ; systematic_id "SPAC1A6.06c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1083188 1083193 . - . misc_feature unknown_917 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1084115 1084174 . + . mRNA SPAC1A6.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1A6.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1084175 1086085 . + . mRNA SPAC1A6.07 ; db_xref "SPD:46/46B06" ; systematic_id "SPAC1A6.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0009277; cell wall (sensu Fungi)" ; gene "SPAC1A6.07" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1084175 1086085 . + . mRNA SPAC1A6.07 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 1086086 1086262 . + . mRNA SPAC1A6.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1A6.07" ; systematic_id "SPAC1A6.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1086376 1087233 . - . mRNA SPAC1A6.08c ; systematic_id "SPAC1A6.08c" ; colour "8" ; gene "SPAC1A6.08c ||| mug125" ; Alias "mug125" ; obsolete_name "mcp2" ; db_xref "SPD:11/11D05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug125" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1086376 1087233 . - . mRNA SPAC1A6.08c ; colour "8" ;
chromosome1 GeneDB 3'-UTR 1087415 1087818 . - . mRNA SPAC1A6.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1A6.09c" ; systematic_id "SPAC1A6.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1087819 1088991 . - . mRNA SPAC1A6.09c ; systematic_id "SPAC1A6.09c" ; colour "2" ; gene "lag1 ||| SPAC1A6.09c" ; Alias "lag1" ; db_xref "SPD:40/40D03" ; GO "GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0050291; sphingosine N-acyltransferase activity
GO:0046513; ceramide biosynthesis
GO:0042493; response to drug
GO:0009636; response to toxin
GO:0007035; vacuolar acidification
GO:0042493; response to drug" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL003C and YKL008C; date=19700101 ||| term=phenotype, resistance to drugs; qualifier=overexpression; cv=phenotype; db_xref=PMID:18441123; date=20080731 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "lag1" ; product "sphingosine N-acyltransferase Lag1" ;
chromosome1 GeneDB CDS 1087819 1088991 . - . mRNA SPAC1A6.09c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1088992 1089044 . - . mRNA SPAC1A6.09c ; Alias "lag1" ; ID "SPAC1A6.09c" ; db_xref "PMID:18488015" ; systematic_id "SPAC1A6.09c" ; primary_name "lag1" ; gene "lag1 ||| SPAC1A6.09c" ; note "From Solexa transcript SPNG185" ;
chromosome1 GeneDB intron 1089045 1089306 . - . intron SPAC1A6.09c ; db_xref "PMID:18488015 ||| SPD:40/40D03" ; systematic_id "SPAC1A6.09c" ; note "From Solexa transcript SPNG185" ;
chromosome1 GeneDB CDS_parts 1090678 1092135 . + . mRNA SPAC1A6.10 ; systematic_id "SPAC1A6.10" ; colour "10" ; gene "SPAC1A6.10 ||| SPAC30D11.15c" ; db_xref "SPD:23/23E06" ; synonym "SPAC30D11.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL027W and YHR003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005739; mitochondrion" ; product "Moeb/ThiF domain" ;
chromosome1 GeneDB CDS 1090678 1092135 . + . mRNA SPAC1A6.10 ; colour "10" ;
chromosome1 GeneDB misc_feature 1092049 1092150 . + . misc_feature unknown_918 ; note "nominal overlap with SPAC1A6, EM:Z99258 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 1092049 1092150 . - . misc_feature unknown_919 ; note "nominal overlap with cosmid SPAC30D11, EM:Z67961 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 1092136 1092256 . + . mRNA SPAC1A6.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1A6.10" ; systematic_id "SPAC1A6.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1092423 1092440 . + . mRNA SPAC30D11.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30D11.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1092441 1094045 . + . mRNA SPAC30D11.14c ; systematic_id "SPAC30D11.14c" ; colour "7" ; gene "SPAC30D11.14c" ; note "involved in mRNA splicing (pers. comm. J.A. Potashkin)" ; db_xref "SPD:25/25G04" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=KH domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB CDS 1092441 1094045 . + . mRNA SPAC30D11.14c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1094046 1094290 . + . mRNA SPAC30D11.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30D11.14c" ; systematic_id "SPAC30D11.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1094348 1094499 . - . mRNA SPAC30D11.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30D11.13" ; systematic_id "SPAC30D11.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1094500 1095393 . - . mRNA SPAC30D11.13 ; systematic_id "SPAC30D11.13" ; colour "2" ; gene "hus5 ||| ubc9 ||| SPAC30D11.13" ; Alias "hus5" ; db_xref "SPD:12/12B08" ; synonym "ubc9" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL064W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Hydroxy Urea Sensitive; cv=name_description; date=20090729 ||| term=phenotype, sensitive to HU; cv=phenotype; date=20090729 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:7768995; date=20100708" ; GO "GO:0007346; regulation of progression through mitotic cell cycle
GO:0005515; protein binding
GO:0000075; cell cycle checkpoint
GO:0016925; protein sumoylation
GO:0019789; SUMO ligase activity
GO:0005515; protein binding
GO:0006974; response to DNA damage stimulus
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000792; heterochromatin" ; primary_name "hus5" ; product "SUMO conjugating enzyme Hus5" ;
chromosome1 GeneDB CDS 1094500 1094560 . - . mRNA SPAC30D11.13 ; colour "2" ;
chromosome1 GeneDB CDS 1094616 1094695 . - . mRNA SPAC30D11.13 ; colour "2" ;
chromosome1 GeneDB CDS 1094745 1094854 . - . mRNA SPAC30D11.13 ; colour "2" ;
chromosome1 GeneDB CDS 1094897 1094920 . - . mRNA SPAC30D11.13 ; colour "2" ;
chromosome1 GeneDB CDS 1095142 1095274 . - . mRNA SPAC30D11.13 ; colour "2" ;
chromosome1 GeneDB CDS 1095328 1095393 . - . mRNA SPAC30D11.13 ; colour "2" ;
chromosome1 GeneDB misc_feature 1094561 1094574 . - . misc_feature unknown_920 ; colour "6" ; note "ttaacctcgtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1094610 1094615 . - . misc_feature unknown_921 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1094696 1094709 . - . misc_feature unknown_922 ; colour "6" ; note "ttaaccatttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1094739 1094744 . - . misc_feature unknown_923 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1094855 1094871 . - . misc_feature unknown_924 ; colour "6" ; note "ctaatgcttttgtacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1094891 1094896 . - . misc_feature unknown_925 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1094921 1094936 . - . misc_feature unknown_926 ; colour "6" ; note "ctaactgcaatcacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1095136 1095141 . - . misc_feature unknown_927 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1095275 1095295 . - . misc_feature unknown_928 ; colour "6" ; note "ctaacaacttctcttacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1095322 1095327 . - . misc_feature unknown_929 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1095392 1095447 . - . mRNA SPAC30D11.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30D11.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB rep_origin 1095554 1095603 . + . rep_origin unknown_930 ; colour "2" ; note "ars1, segment 1 (Clyne & Kelly)" ;
chromosome1 GeneDB rep_origin 1095554 1096335 . + . rep_origin unknown_931 ; note "ars1, minimal sequence (Clyne & Kelly)" ;
chromosome1 GeneDB rep_origin 1095568 1095608 . + . rep_origin unknown_932 ; colour "4" ; note "protected region F (PMID 11717425), protected region D (PMID 12374757)" ;
chromosome1 GeneDB rep_origin 1095736 1095739 . + . rep_origin unknown_933 ; colour "7" ; note "Initiation site in ars1 determined by RIP mapping (PMID: 10523311)" ;
chromosome1 GeneDB rep_origin 1095858 1095884 . + . rep_origin unknown_934 ; colour "4" ; note "protected region E (PMID 11717425)" ;
chromosome1 GeneDB rep_origin 1095921 1095936 . + . rep_origin unknown_935 ; colour "4" ; note "protected region D (PMID 11717425); protected region C (PMID 12374757)" ;
chromosome1 GeneDB rep_origin 1095954 1096003 . + . rep_origin unknown_936 ; colour "2" ; note "segment 9 (Clyne and Kelly)" ;
chromosome1 GeneDB rep_origin 1096013 1096030 . + . rep_origin unknown_937 ; colour "4" ; note "protected region C (PMID 11717425)" ;
chromosome1 GeneDB rep_origin 1096094 1096131 . + . rep_origin unknown_938 ; colour "4" ; note "protected region B (PMID 11717425)" ;
chromosome1 GeneDB misc_feature 1096118 1096130 . + . misc_feature unknown_939 ; colour "9" ; note "S. pombe ARS element (pFL201.2) consensus EMBL:SPARS201 X0789 4" ;
chromosome1 GeneDB misc_feature 1096206 1096230 . + . misc_feature unknown_940 ; colour "4" ; note "protected region A (PMID 11717425)" ;
chromosome1 GeneDB tRNA 1096369 1096466 . + . tRNA SPATRNASER.01 ; db_xref "EMBL:V01360" ; systematic_id "SPATRNASER.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033431; CGA codon-amino acid adaptor activity" ; gene "SPATRNASER.01 ||| sup12" ; product "tRNA Serine" ; note "tRNA Ser anticodon CGA, Cove score 77.58" ;
chromosome1 GeneDB intron 1096406 1096421 . + . intron SPATRNASER.01 ; systematic_id "SPATRNASER.01" ; note "intron tRNA Ser anticodon CGA" ;
chromosome1 GeneDB tRNA 1096474 1096545 . + . tRNA SPATRNAMET.01 ; db_xref "EMBL:V01360" ; systematic_id "SPATRNAMET.01" ; GO "GO:0005737; cytoplasm
GO:0006412; translation
GO:0033425; CAT codon-amino acid adaptor activity" ; gene "SPATRNAMET.01" ; product "tRNA Methionine" ; note "tRNA Met anticodon CAT, Cove score 69.52: EMBL:V01360" ;
chromosome1 GeneDB 3'-UTR 1096876 1096889 . - . mRNA SPAC30D11.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30D11.12" ; systematic_id "SPAC30D11.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1096890 1097250 . - . mRNA SPAC30D11.12 ; systematic_id "SPAC30D11.12" ; colour "7" ; gene "rpl3802 ||| rpl38-2 ||| rps38 ||| SPAC30D11.12" ; Alias "rpl3802" ; db_xref "SPD:02/02D10" ; synonym "rpl38-2 ||| rps38" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR325C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl3802" ; product "60S ribosomal protein L38 (predicted)" ;
chromosome1 GeneDB CDS 1096890 1096924 . - . mRNA SPAC30D11.12 ; colour "7" ;
chromosome1 GeneDB CDS 1097012 1097198 . - . mRNA SPAC30D11.12 ; colour "7" ;
chromosome1 GeneDB CDS 1097248 1097250 . - . mRNA SPAC30D11.12 ; colour "7" ;
chromosome1 GeneDB misc_feature 1096925 1096934 . - . misc_feature unknown_941 ; colour "6" ; note "ttgattatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1096925 1097011 . - . intron SPAC30D11.12 ; Alias "rpl3802" ; db_xref "SPD:02/02D10" ; systematic_id "SPAC30D11.12" ; primary_name "rpl3802" ; gene "rpl3802 ||| rpl38-2 ||| rps38 ||| SPAC30D11.12" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1097006 1097011 . - . misc_feature unknown_942 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1097199 1097213 . - . misc_feature unknown_943 ; colour "6" ; note "ctgacttagtattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1097242 1097247 . - . misc_feature unknown_944 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1097249 1097262 . - . mRNA SPAC30D11.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30D11.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 1097318 1097326 . - . promoter unknown_945 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB 3'-UTR 1097758 1098035 . - . mRNA SPAC30D11.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30D11.11" ; systematic_id "SPAC30D11.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1098036 1099364 . - . mRNA SPAC30D11.11 ; db_xref "SPD:20/20E09" ; systematic_id "SPAC30D11.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR023C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005783; endoplasmic reticulum
GO:0016020; membrane
GO:0046872; metal ion binding
GO:0006882; zinc ion homeostasis" ; gene "SPAC30D11.11" ; product "Haemolysin-III family protein (predicted)" ;
chromosome1 GeneDB CDS 1098036 1099364 . - . mRNA SPAC30D11.11 ; colour "7" ;
chromosome1 GeneDB CDS_parts 1100128 1101537 . - . mRNA SPAC30D11.10 ; systematic_id "SPAC30D11.10" ; colour "2" ; gene "rad22 ||| SPAC30D11.10" ; Alias "rad22" ; db_xref "SPD:23/23B03" ; synonym "rad22A" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, sumoylated; cv=pt_mod; date=19700101 ||| term=orthologous to S. cerevisiae YML032C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0003684; damaged DNA binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003697; single-stranded DNA binding
GO:0000730; DNA recombinase assembly
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000734; gene conversion at mating-type locus, DNA repair synthesis
GO:0007533; mating type switching
GO:0000711; meiotic DNA repair synthesis
GO:0051260; protein homooligomerization
GO:0005515; protein binding" ; primary_name "rad22" ; product "DNA recombination protein Rad22" ;
chromosome1 GeneDB CDS 1100128 1101537 . - . mRNA SPAC30D11.10 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1101536 1101551 . - . mRNA SPAC30D11.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30D11.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1101741 1103747 . - . mRNA SPAC30D11.09 ; systematic_id "SPAC30D11.09" ; colour "2" ; gene "cwf19 ||| SPAC30D11.09" ; Alias "cwf19" ; db_xref "SPD:27/27D08" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human CWF19L2 homolog; date=20080312 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080312 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "cwf19" ; product "complexed with Cdc5 protein Cwf19" ;
chromosome1 GeneDB CDS 1101741 1101979 . - . mRNA SPAC30D11.09 ; colour "2" ;
chromosome1 GeneDB CDS 1102023 1102290 . - . mRNA SPAC30D11.09 ; colour "2" ;
chromosome1 GeneDB CDS 1102335 1103747 . - . mRNA SPAC30D11.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 1101980 1101990 . - . misc_feature unknown_946 ; colour "6" ; note "ctaatgattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1102017 1102022 . - . misc_feature unknown_947 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1102291 1102307 . - . misc_feature unknown_948 ; colour "6" ; note "ctaacaaacctttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1102329 1102334 . - . misc_feature unknown_949 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1103746 1103754 . - . mRNA SPAC30D11.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30D11.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1104799 1104863 . + . mRNA SPAC30D11.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30D11.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1104864 1106529 . + . mRNA SPAC30D11.08c ; systematic_id "SPAC30D11.08c" ; colour "2" ; gene "phf2 ||| SPAC30D11.08c ||| swp2 ||| saf60" ; Alias "phf2" ; db_xref "SPD:34/34H08" ; synonym "swp2 ||| saf60" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20061218 ||| term=zf-PHD finger; cv=protein_family; date=20061218 ||| term=name description, SWm associated Phd1; cv=name_description; db_xref=PMID:17440621; date=20061218 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17371846; date=20070421 ||| term=human retinoblastoma binding protein 2-like; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0033193; Lsd1/2 complex
GO:0031491; nucleosome binding
GO:0033169; histone H3-K9 demethylation
GO:0034605; cellular response to heat
GO:0019787; small conjugating protein ligase activity
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "phf2" ; product "Lsd1/2 complex PHD finger containing protein Phf2" ;
chromosome1 GeneDB CDS 1104864 1106203 . + . mRNA SPAC30D11.08c ; colour "2" ;
chromosome1 GeneDB CDS 1106253 1106529 . + . mRNA SPAC30D11.08c ; colour "2" ;
chromosome1 GeneDB misc_feature 1106204 1106209 . + . misc_feature unknown_950 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1106241 1106252 . + . misc_feature unknown_951 ; colour "6" ; note "ctaatattctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1106530 1106555 . + . mRNA SPAC30D11.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30D11.08c" ; systematic_id "SPAC30D11.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1106568 1106772 . - . mRNA SPAC30D11.07 ; Alias "nth1" ; ID "SPAC30D11.07" ; db_xref "EMBL:AB191154 ||| SPD:16/16D03" ; systematic_id "SPAC30D11.07" ; primary_name "nth1" ;
chromosome1 GeneDB CDS_parts 1106773 1107840 . - . mRNA SPAC30D11.07 ; systematic_id "SPAC30D11.07" ; colour "2" ; db_xref "SPD:16/16D03" ; Alias "nth1" ; GO "GO:0005759; mitochondrial matrix
GO:0005634; nucleus
GO:0034039; 8-oxo-7,8-dihydroguanine DNA N- glycosylase activity
GO:0034042; 5-formyluracil DNA N-glycosylase activity
GO:0034043; 5-hydroxymethyluracil DNA N- glycosylase activity
GO:0003677; DNA binding
GO:0008534; oxidized purine base lesion DNA N- glycosylase activity
GO:0000703; oxidized pyrimidine base lesion DNA N- glycosylase activity
GO:0006285; base-excision repair, AP site formation
GO:0006285; base-excision repair, AP site formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL015C and YOL043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sensitive to MMS; qualifier=deletion; cv=phenotype; db_xref=PMID:12675805; date=20100504" ; primary_name "nth1" ; product "DNA endonuclease III" ; EC_number "4.2.99.18" ;
chromosome1 GeneDB CDS 1106773 1107840 . - . mRNA SPAC30D11.07 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1107841 1107876 . - . mRNA SPAC30D11.07 ; Alias "nth1" ; ID "SPAC30D11.07" ; db_xref "EMBL:AB191154" ; systematic_id "SPAC30D11.07" ; primary_name "nth1" ;
chromosome1 GeneDB 5'-UTR 1108425 1108566 . + . mRNA SPAC30D11.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30D11.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1108567 1110110 . + . mRNA SPAC30D11.06c ; db_xref "SPD:25/25A08" ; systematic_id "SPAC30D11.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR051W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC30D11.06c" ; product "DUF300 family protein" ;
chromosome1 GeneDB CDS 1108567 1108703 . + . mRNA SPAC30D11.06c ; colour "10" ;
chromosome1 GeneDB CDS 1108759 1108846 . + . mRNA SPAC30D11.06c ; colour "10" ;
chromosome1 GeneDB CDS 1109055 1110110 . + . mRNA SPAC30D11.06c ; colour "10" ;
chromosome1 GeneDB misc_feature 1108704 1108709 . + . misc_feature unknown_952 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1108744 1108758 . + . misc_feature unknown_953 ; colour "6" ; note "ctaatgctttgctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1108847 1108852 . + . misc_feature unknown_954 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1109040 1109054 . + . misc_feature unknown_955 ; colour "6" ; note "ctaacaataaattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1109417 1110116 . - . mRNA SPAC30D11.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30D11.05" ; systematic_id "SPAC30D11.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1110111 1110516 . + . mRNA SPAC30D11.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30D11.06c" ; systematic_id "SPAC30D11.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1110117 1111118 . - . mRNA SPAC30D11.05 ; systematic_id "SPAC30D11.05" ; colour "7" ; gene "aps3 ||| SPAC30D11.05" ; Alias "aps3" ; db_xref "SPD:14/14F10" ; GO "GO:0006896; Golgi to vacuole transport
GO:0016192; vesicle-mediated transport
GO:0030123; AP-3 adaptor complex
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "aps3" ; product "AP-3 adaptor complex subunit Aps3 (predicted)" ;
chromosome1 GeneDB CDS 1110117 1110293 . - . mRNA SPAC30D11.05 ; colour "7" ;
chromosome1 GeneDB CDS 1110756 1110809 . - . mRNA SPAC30D11.05 ; colour "7" ;
chromosome1 GeneDB CDS 1110852 1111118 . - . mRNA SPAC30D11.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 1110294 1110307 . - . misc_feature unknown_956 ; colour "6" ; note "ctaacacaatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1110750 1110755 . - . misc_feature unknown_957 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1110810 1110822 . - . misc_feature unknown_958 ; colour "6" ; note "ctaactattaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1110846 1110851 . - . misc_feature unknown_959 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1111117 1111177 . - . mRNA SPAC30D11.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30D11.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1112214 1115736 . + . mRNA SPAC30D11.04c ; systematic_id "SPAC30D11.04c" ; colour "2" ; gene "nup124 ||| SPAC30D11.04c" ; Alias "nup124" ; db_xref "SPD:48/48D05" ; GO "GO:0005643; nuclear pore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051170; nuclear import
GO:0051170; nuclear import
GO:0032197; transposition, RNA-mediated
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=FG repeat; qualifier=inferred from context; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10409764; date=19700101 ||| term=human Nup153 ortholog; db_xref=PMID:15659641; date=19700101 ||| term=orthologous to S. cerevisiae YOR098C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nup124" ; product "nucleoporin Nup124" ;
chromosome1 GeneDB CDS 1112214 1112464 . + . mRNA SPAC30D11.04c ; colour "2" ;
chromosome1 GeneDB CDS 1112508 1115736 . + . mRNA SPAC30D11.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 1112465 1112470 . + . misc_feature unknown_960 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1112494 1112507 . + . misc_feature unknown_961 ; colour "6" ; note "ttaacattaaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1115737 1115798 . + . mRNA SPAC30D11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30D11.04c" ; systematic_id "SPAC30D11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1115961 1116056 . - . mRNA SPAC30D11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30D11.03" ; systematic_id "SPAC30D11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1116057 1118412 . - . mRNA SPAC30D11.03 ; systematic_id "SPAC30D11.03" ; colour "7" ; gene "drs1 ||| SPAC30D11.03 ||| ddx27" ; Alias "ddx27" ; db_xref "SPD:38/38C09" ; synonym "drs1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YLL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005730; nucleolus
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0003723; RNA binding
GO:0006364; rRNA processing" ; primary_name "ddx27" ; product "ATP-dependent RNA helicase Ddx27/Drs1 (predicted)" ;
chromosome1 GeneDB CDS 1116057 1116202 . - . mRNA SPAC30D11.03 ; colour "7" ;
chromosome1 GeneDB CDS 1116247 1116367 . - . mRNA SPAC30D11.03 ; colour "7" ;
chromosome1 GeneDB CDS 1116415 1118412 . - . mRNA SPAC30D11.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 1116203 1116214 . - . misc_feature unknown_962 ; colour "6" ; note "ctaacattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1116241 1116246 . - . misc_feature unknown_963 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1116368 1116380 . - . misc_feature unknown_964 ; colour "6" ; note "ctaacaaatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1116409 1116414 . - . misc_feature unknown_965 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB LTR 1118434 1118790 . + . LTR unknown_966 ; colour "4" ; note "lone tf1 type LTR" ;
chromosome1 GeneDB CDS_parts 1119378 1119763 . + . mRNA SPAC30D11.02c ; db_xref "SPD:01/01C12" ; systematic_id "SPAC30D11.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC30D11.02c" ; product "sequence orphan" ; note "under 100 amino acid threshold" ;
chromosome1 GeneDB CDS 1119378 1119620 . + . mRNA SPAC30D11.02c ; colour "8" ;
chromosome1 GeneDB CDS 1119749 1119763 . + . mRNA SPAC30D11.02c ; colour "8" ;
chromosome1 GeneDB CDS_parts 1120548 1123529 . + . mRNA SPAC30D11.01c ; systematic_id "SPAC30D11.01c" ; colour "7" ; gene "SPAC30D11.01c ||| SPAC56F8.01" ; db_xref "SPD:47/47F07" ; synonym "SPAC56F8.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAPB24D3.10c and SPAC922.02c; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; cell surface
GO:0004558; alpha-glucosidase activity
GO:0044247; cellular polysaccharide catabolism
GO:0009313; oligosaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; product "alpha-glucosidase (predicted)" ; EC_number "3.2.1.-" ;
chromosome1 GeneDB CDS 1120548 1123529 . + . mRNA SPAC30D11.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 1121601 1121701 . + . misc_feature unknown_967 ; note "nominal overlap with SPAC56F8 and cosmid SPAC30D11" ;
chromosome1 GeneDB 3'-UTR 1123530 1123605 . + . mRNA SPAC30D11.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30D11.01c" ; systematic_id "SPAC30D11.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1124101 1124166 . + . mRNA SPAC56F8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC56F8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1124167 1128720 . + . mRNA SPAC56F8.02 ; db_xref "SPD:30/30H11" ; systematic_id "SPAC56F8.02" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR093C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC56F8.02" ; product "AMP binding enzyme (predicted)" ;
chromosome1 GeneDB CDS 1124167 1128720 . + . mRNA SPAC56F8.02 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1128721 1128995 . + . mRNA SPAC56F8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56F8.02" ; systematic_id "SPAC56F8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1129548 1132787 . + . mRNA SPAC56F8.03 ; db_xref "SPD:48/48B03" ; systematic_id "SPAC56F8.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL035W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0003924; GTPase activity
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation
GO:0005525; GTP binding
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)" ; gene "SPAC56F8.03" ; product "translation initiation factor IF2 (predicted)" ;
chromosome1 GeneDB CDS 1129548 1132787 . + . mRNA SPAC56F8.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1132788 1132845 . + . mRNA SPAC56F8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56F8.03" ; systematic_id "SPAC56F8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1133226 1134356 . - . mRNA SPAC56F8.04c ; systematic_id "SPAC56F8.04c" ; colour "2" ; gene "coq2 ||| ppt1 ||| SPAC56F8.04c" ; Alias "ppt1" ; db_xref "SPD:16/16F05" ; synonym "coq2" ; GO "GO:0006744; ubiquinone biosynthesis
GO:0016094; polyprenol biosynthesis
GO:0008412; 4-hydroxybenzoate octaprenyltransferase activity
GO:0005743; mitochondrial inner membrane
GO:0031305; integral to mitochondrial inner membrane
GO:0016209; antioxidant activity
GO:0019646; aerobic electron transport chain
GO:0006119; oxidative phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, coenzyme Q deficiency; date=20060926 ||| term=orthologous to S. cerevisiae YNR041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, growth defect, requires antioxidant for growth; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to H202; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to copper ions; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222" ; primary_name "ppt1" ; product "para-hydroxybenzoate--polyprenyltransferasePpt1" ; EC_number "2.5.1.-" ;
chromosome1 GeneDB CDS 1133226 1134283 . - . mRNA SPAC56F8.04c ; colour "2" ;
chromosome1 GeneDB CDS 1134332 1134356 . - . mRNA SPAC56F8.04c ; colour "2" ;
chromosome1 GeneDB CDS_parts 1134697 1136003 . - . mRNA SPAC56F8.05c ; systematic_id "SPAC56F8.05c" ; colour "10" ; gene "SPAC56F8.05c ||| mug64" ; Alias "mug64" ; db_xref "SPD:23/23G07" ; GO "GO:0005794; Golgi apparatus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL041W; date=19700101 ||| term=BAR domain; date=20071231 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mug64" ; product "BAR domain protein (predicted)" ;
chromosome1 GeneDB CDS 1134697 1135061 . - . mRNA SPAC56F8.05c ; colour "10" ;
chromosome1 GeneDB CDS 1135195 1135402 . - . mRNA SPAC56F8.05c ; colour "10" ;
chromosome1 GeneDB CDS 1135517 1135684 . - . mRNA SPAC56F8.05c ; colour "10" ;
chromosome1 GeneDB CDS 1135729 1135776 . - . mRNA SPAC56F8.05c ; colour "10" ;
chromosome1 GeneDB CDS 1135932 1136003 . - . mRNA SPAC56F8.05c ; colour "10" ;
chromosome1 GeneDB misc_feature 1135062 1135076 . - . misc_feature unknown_968 ; colour "2" ; note "splice branch and acceptor sequence, ctaacctgtacgcag" ;
chromosome1 GeneDB misc_feature 1135189 1135194 . - . misc_feature unknown_969 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 1135403 1135423 . - . misc_feature unknown_970 ; colour "2" ; note "splice branch and acceptor sequence, ctaactatttgttaa atgcag" ;
chromosome1 GeneDB misc_feature 1135511 1135516 . - . misc_feature unknown_971 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB misc_feature 1135685 1135702 . - . misc_feature unknown_972 ; colour "2" ; note "splice branch and acceptor sequence, ttaacattttttcaa tag" ;
chromosome1 GeneDB misc_feature 1135926 1135931 . - . misc_feature unknown_973 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB 3'-UTR 1136313 1136351 . - . mRNA SPAC56F8.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56F8.06c" ; systematic_id "SPAC56F8.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1136352 1137731 . - . mRNA SPAC56F8.06c ; systematic_id "SPAC56F8.06c" ; colour "7" ; gene "alg10 ||| SPAC56F8.06c" ; Alias "alg10" ; db_xref "SPD:44/44D02" ; GO "GO:0004583; dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR227W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "alg10" ; product "dolichyl-phosphate-glucose-glycolipid alpha- glucosyltransferase Alg10 (predicted)" ;
chromosome1 GeneDB CDS 1136352 1136754 . - . mRNA SPAC56F8.06c ; colour "7" ;
chromosome1 GeneDB CDS 1136797 1137731 . - . mRNA SPAC56F8.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 1136755 1136765 . - . misc_feature unknown_974 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgtttag" ;
chromosome1 GeneDB misc_feature 1136791 1136796 . - . misc_feature unknown_975 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB 5'-UTR 1137730 1137906 . - . mRNA SPAC56F8.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC56F8.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1138566 1139117 . + . mRNA SPAC56F8.07 ; db_xref "SPD:35/35A12" ; systematic_id "SPAC56F8.07" ; controlled_curation "term=orthologous to S. cerevisiae YLR050C; date=20080205 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=human tMEM97 ortholog; date=20100718" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0031227; intrinsic to endoplasmic reticulum membrane" ; colour "10" ; gene "SPAC56F8.07" ; product "conserved eukaryotic ER membrane protein" ;
chromosome1 GeneDB CDS 1138566 1139117 . + . mRNA SPAC56F8.07 ; colour "10" ;
chromosome1 GeneDB CDS_parts 1139130 1140242 . + . mRNA SPAC56F8.08 ; systematic_id "SPAC56F8.08" ; colour "2" ; gene "mud1 ||| ucp1 ||| ddi1 ||| SPAC56F8.08" ; note "N terminal exon possibly incorrect; possibly spliced upstream to SPAC56F8.11c" ; Alias "mud1" ; db_xref "SPD:52/52A12" ; synonym "ucp1 ||| ddi1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YER143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; plasma membrane
GO:0000149; SNARE binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0017157; regulation of exocytosis
GO:0006511; ubiquitin-dependent protein catabolism
GO:0031593; polyubiquitin binding" ; primary_name "mud1" ; product "UBA domain protein Mud1" ;
chromosome1 GeneDB CDS 1139130 1139333 . + . mRNA SPAC56F8.08 ; colour "2" ;
chromosome1 GeneDB CDS 1139448 1140242 . + . mRNA SPAC56F8.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 1139334 1139339 . + . misc_feature unknown_976 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB intron 1139334 1139447 . + . intron SPAC56F8.08 ; Alias "mud1" ; db_xref "SPD:52/52A12" ; systematic_id "SPAC56F8.08" ; primary_name "mud1" ; gene "mud1 ||| ucp1 ||| ddi1 ||| SPAC56F8.08" ; note "Intron confirmed by cDNA- Colin Gordon pers comm" ;
chromosome1 GeneDB misc_feature 1139433 1139447 . + . misc_feature unknown_977 ; colour "2" ; note "splice branch and acceptor sequence, ctaacatttttgtag" ;
chromosome1 GeneDB 3'-UTR 1140243 1140325 . + . mRNA SPAC56F8.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56F8.08" ; systematic_id "SPAC56F8.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1140621 1141577 . + . mRNA SPAC56F8.09 ; systematic_id "SPAC56F8.09" ; colour "7" ; gene "rrp8 ||| SPAC56F8.09" ; Alias "rrp8" ; db_xref "SPD:13/13E06" ; GO "GO:0008168; methyltransferase activity
GO:0006364; rRNA processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR083W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rrp8" ; product "rRNA methyltransferase Rrp8 (predicted)" ;
chromosome1 GeneDB CDS 1140621 1141577 . + . mRNA SPAC56F8.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1141578 1142002 . + . mRNA SPAC56F8.09 ; Alias "rrp8" ; ID "SPAC56F8.09" ; db_xref "SPD:13/13E06" ; systematic_id "SPAC56F8.09" ; primary_name "rrp8" ; gene "rrp8 ||| SPAC56F8.09" ; note "mRNA from AU010934" ;
chromosome1 GeneDB LTR 1142619 1142965 . + . LTR unknown_978 ; note "Tf1-type LTR" ;
chromosome1 GeneDB 5'-UTR 1143077 1143114 . + . mRNA SPAC56F8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC56F8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1143115 1144926 . + . mRNA SPAC56F8.10 ; systematic_id "SPAC56F8.10" ; colour "2" ; gene "met9 ||| met5 ||| SPAC56F8.10" ; Alias "met9" ; db_xref "SPD:36/36E12" ; synonym "met5" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=name description, named from map position, met5; date=20100611" ; GO "GO:0005739; mitochondrion
GO:0004489; methylenetetrahydrofolate reductase (NADPH) activity
GO:0009086; methionine biosynthetic process" ; primary_name "met9" ; product "methylenetetrahydrofolate reductase Met9" ; EC_number "1.5.1.20" ;
chromosome1 GeneDB CDS 1143115 1144926 . + . mRNA SPAC56F8.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1144927 1145223 . + . mRNA SPAC56F8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56F8.10" ; systematic_id "SPAC56F8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1145443 1145541 . + . mRNA SPAC56F8.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC56F8.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1145542 1146358 . + . mRNA SPAC56F8.11 ; systematic_id "SPAC56F8.11" ; colour "7" ; gene "spc3 ||| SPAC56F8.11" ; Alias "spc3" ; db_xref "SPD:10/10E04" ; GO "GO:0005787; signal peptidase complex
GO:0045047; protein targeting to ER
GO:0006465; signal peptide processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR066W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spc3" ; product "signal peptidase subunit Spc3 (predicted)" ;
chromosome1 GeneDB CDS 1145542 1145696 . + . mRNA SPAC56F8.11 ; colour "7" ;
chromosome1 GeneDB CDS 1145888 1146041 . + . mRNA SPAC56F8.11 ; colour "7" ;
chromosome1 GeneDB CDS 1146110 1146358 . + . mRNA SPAC56F8.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 1145697 1145702 . + . misc_feature unknown_979 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 1145873 1145887 . + . misc_feature unknown_980 ; colour "2" ; note "splice branch and acceptor sequence, ttaacactagtatag" ;
chromosome1 GeneDB misc_feature 1146042 1146047 . + . misc_feature unknown_981 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 1146096 1146109 . + . misc_feature unknown_982 ; colour "2" ; note "splice branch and acceptor sequence, ttaaccttttaaag" ;
chromosome1 GeneDB 3'-UTR 1146359 1146598 . + . mRNA SPAC56F8.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56F8.11" ; systematic_id "SPAC56F8.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1146833 1148017 . + . mRNA SPAC56F8.12 ; db_xref "SPD:18/18G10" ; systematic_id "SPAC56F8.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; colour "10" ; gene "SPAC56F8.12" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 1146833 1148017 . + . mRNA SPAC56F8.12 ; colour "10" ;
chromosome1 GeneDB LTR 1148611 1148794 . - . LTR unknown_983 ; note "degraded Tf1-type LTR" ;
chromosome1 GeneDB misc_feature 1148818 1153592 . - . misc_feature unknown_984 ; note "gene free region (predicted)" ;
chromosome1 GeneDB CDS_parts 1149911 1150216 . + . mRNA SPAC56F8.13 ; db_xref "SPD:01/01E04" ; systematic_id "SPAC56F8.13" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPAC56F8.13" ; product "dubious" ;
chromosome1 GeneDB CDS 1149911 1150216 . + . mRNA SPAC56F8.13 ; colour "6" ;
chromosome1 GeneDB CDS_parts 1150855 1151250 . - . mRNA SPAC56F8.14c ; systematic_id "SPAC56F8.14c" ; colour "8" ; gene "SPAC56F8.14c ||| mug115" ; note "has expression profile on microarray in otherwise apparently gene free region" ; Alias "mug115" ; db_xref "SPD:02/02H11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug115" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1150855 1151250 . - . mRNA SPAC56F8.14c ; colour "8" ;
chromosome1 GeneDB CDS_parts 1152068 1152598 . + . mRNA SPAC56F8.15 ; db_xref "SPD:05/05D02" ; systematic_id "SPAC56F8.15" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPAC56F8.15" ; product "dubious" ;
chromosome1 GeneDB CDS 1152068 1152598 . + . mRNA SPAC56F8.15 ; colour "6" ;
chromosome1 GeneDB 5'-UTR 1153593 1154732 . + . mRNA SPAC56F8.16 ; Alias "esc1" ; ID "SPAC56F8.16" ; db_xref "EMBL:X69389" ; systematic_id "SPAC56F8.16" ; gene "esc1 ||| SPAC56F8.16" ; primary_name "esc1" ;
chromosome1 GeneDB CDS_parts 1154733 1155974 . + . mRNA SPAC56F8.16 ; systematic_id "SPAC56F8.16" ; colour "2" ; gene "esc1 ||| SPAC56F8.16" ; Alias "esc1" ; db_xref "SPD:19/19H01" ; GO "GO:0031142; induction of conjugation upon nitrogen starvation
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0045893; positive regulation of transcription, DNA-dependent
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "esc1" ; product "transcription factor Esc1 (predicted)" ;
chromosome1 GeneDB CDS 1154733 1155974 . + . mRNA SPAC56F8.16 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1155975 1156443 . + . mRNA SPAC56F8.16 ; Alias "esc1" ; ID "SPAC56F8.16" ; db_xref "EMBL:X69389 ||| SPD:19/19H01" ; systematic_id "SPAC56F8.16" ; gene "esc1 ||| SPAC56F8.16" ; primary_name "esc1" ;
chromosome1 GeneDB 3'-UTR 1156487 1157109 . - . mRNA SPAC22A12.01c ; Alias "pso2" ; ID "SPAC22A12.01c" ; db_xref "SPD:35/35B10" ; systematic_id "SPAC22A12.01c" ; gene "pso2 ||| SPAC56F8.17c ||| SPAC22A12.01c" ; primary_name "pso2" ; note "mRNA from AU009477" ;
chromosome1 GeneDB CDS_parts 1157110 1158792 . - . mRNA SPAC22A12.01c ; systematic_id "SPAC22A12.01c" ; colour "2" ; gene "pso2 ||| SPAC56F8.17c ||| SPAC22A12.01c" ; Alias "pso2" ; db_xref "SPD:35/35B10" ; synonym "snm1 ||| SPAC56F8.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR137C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005634; nucleus
GO:0006281; DNA repair
GO:0003684; damaged DNA binding
GO:0008409; 5'-3' exonuclease activity" ; primary_name "pso2" ; product "DNA 5' exonuclease (predicted)" ;
chromosome1 GeneDB CDS 1157110 1158792 . - . mRNA SPAC22A12.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 1158476 1158693 . + . misc_feature unknown_985 ; note "nominal overlap with cosmid SPAC22A12 and cosmid SPAC56F8" ;
chromosome1 GeneDB 5'-UTR 1158791 1159466 . - . mRNA SPAC22A12.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1159626 1160000 . - . mRNA SPAC22A12.02c ; systematic_id "SPAC22A12.02c" ; colour "8" ; gene "SPAC22A12.02c ||| mug103" ; db_xref "SPD:02/02F06" ; Alias "mug103" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug103" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1159626 1160000 . - . mRNA SPAC22A12.02c ; colour "8" ;
chromosome1 GeneDB CDS_parts 1160219 1161352 . - . mRNA SPAC22A12.03c ; systematic_id "SPAC22A12.03c" ; colour "2" ; gene "csn4 ||| SPAC22A12.03c" ; Alias "csn4" ; db_xref "SPD:17/17G10" ; GO "GO:0010388; cullin deneddylation
GO:0008180; signalosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "csn4" ; product "COP9/signalosome complex subunit Csn4" ;
chromosome1 GeneDB CDS 1160219 1161352 . - . mRNA SPAC22A12.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1161351 1161390 . - . mRNA SPAC22A12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1162217 1162243 . - . mRNA SPAC22A12.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22A12.04c" ; systematic_id "SPAC22A12.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1162244 1162636 . - . mRNA SPAC22A12.04c ; systematic_id "SPAC22A12.04c" ; colour "7" ; gene "rps2201 ||| rps22-1 ||| rps15a-1 ||| SPAC22A12.04c" ; Alias "rps2201" ; db_xref "SPD:51/51B01" ; synonym "rps22-1 ||| rps15a-1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL190C and YLR367W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; primary_name "rps2201" ; product "40S ribosomal protein S15a (predicted)" ;
chromosome1 GeneDB CDS 1162244 1162636 . - . mRNA SPAC22A12.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1162635 1162655 . - . mRNA SPAC22A12.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 1162707 1162714 . - . promoter unknown_986 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB 5'-UTR 1163057 1163122 . + . mRNA SPAC22A12.05 ; Alias "rpc11" ; ID "SPAC22A12.05" ; systematic_id "SPAC22A12.05" ; primary_name "rpc11" ; gene "rpc11 ||| SPAC22A12.05" ; note "mRNA from AF027823" ;
chromosome1 GeneDB CDS_parts 1163123 1163452 . + . mRNA SPAC22A12.05 ; systematic_id "SPAC22A12.05" ; colour "2" ; gene "rpc11 ||| SPAC22A12.05" ; Alias "rpc11" ; db_xref "SPD:01/01H01" ; GO "GO:0005666; DNA-directed RNA polymerase III complex
GO:0003677; DNA binding
GO:0003899; DNA-directed RNA polymerase activity
GO:0042779; removal of tRNA 3'-trailer sequence
GO:0042779; removal of tRNA 3'-trailer sequence
GO:0006384; transcription initiation from RNA polymerase III promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR045C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpc11" ; product "DNA-directed RNA polymerase III complex subunit Rpc11" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB CDS 1163123 1163452 . + . mRNA SPAC22A12.05 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1163453 1163522 . + . mRNA SPAC22A12.05 ; Alias "rpc11" ; ID "SPAC22A12.05" ; db_xref "SPD:01/01H01" ; systematic_id "SPAC22A12.05" ; primary_name "rpc11" ; gene "rpc11 ||| SPAC22A12.05" ; note "mRNA from AF027823" ;
chromosome1 GeneDB 3'-UTR 1163745 1163935 . - . mRNA SPAC22A12.06c ; ID "SPAC22A12.06c" ; db_xref "SPD:44/44B09" ; systematic_id "SPAC22A12.06c" ; gene "SPAC22A12.06c" ; note "mRNA from AU008067" ;
chromosome1 GeneDB CDS_parts 1163936 1165225 . - . mRNA SPAC22A12.06c ; db_xref "SPD:44/44B09" ; systematic_id "SPAC22A12.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR280C and YMR222C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0017171; serine hydrolase activity
GO:0006629; lipid metabolism
GO:0044248; cellular catabolic process" ; gene "SPAC22A12.06c" ; product "serine hydrolase" ;
chromosome1 GeneDB CDS 1163936 1165225 . - . mRNA SPAC22A12.06c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 1165224 1165515 . - . mRNA SPAC22A12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1166615 1166821 . - . mRNA SPAC22A12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22A12.07c" ; systematic_id "SPAC22A12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1166822 1169503 . - . mRNA SPAC22A12.07c ; systematic_id "SPAC22A12.07c" ; colour "2" ; db_xref "SPD:47/47B01" ; Alias "ogm1" ; synonym "oma1" ; GO "GO:0004169; dolichyl-phosphate-mannose-protein mannosyltransferase activity
GO:0035269; protein amino acid O-linked mannosylation
GO:0035269; protein amino acid O-linked mannosylation
GO:0005789; endoplasmic reticulum membrane
GO:0000752; agglutination during conjugation with cellular fusion
GO:0012505; endomembrane system
GO:0031502; dolichyl-phosphate-mannose-protein mannosyltransferase complex
GO:0046982; protein heterodimerization activity
GO:0000032; cell wall mannoprotein biosynthesis
GO:0071937; barrier septum formation involved in cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PMT family; date=19700101 ||| term=PMT1 subfamily; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15809069; date=19700101 ||| term=orthologous to S. cerevisiae YDL095W and YDL093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, O-glycoside mannosyltransferase; date=20100126 ||| term=target is Wsc1; db_xref=PMID:15948957; date=20100823" ; primary_name "ogm1" ; product "protein O-mannosyltransferase Ogm1" ; EC_number "2.4.1.109" ;
chromosome1 GeneDB CDS 1166822 1169503 . - . mRNA SPAC22A12.07c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1169502 1169587 . - . mRNA SPAC22A12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1170196 1172126 . - . mRNA SPAC22A12.08c ; db_xref "SPD:46/46B08" ; systematic_id "SPAC22A12.08c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, proteolytic cleavage; cv=pt_mod; date=20060825 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; date=20060825 ||| term=orthologous to S. cerevisiae YKR070W (N-term); date=19700101 ||| term=orthologous to S. cerevisiae YDL142C (C-term); date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005739; mitochondrion
GO:0005739; mitochondrion
GO:0016787; hydrolase activity
GO:0008808; cardiolipin synthase activity
GO:0008610; lipid biosynthesis
GO:0007006; mitochondrial membrane organization and biogenesis
GO:0032048; cardiolipin metabolic process" ; gene "SPAC22A12.08c" ; product "cardiolipin synthase/ hydrolase fusion protein (predicted)" ; EC_number "2.7.8.-" ;
chromosome1 GeneDB CDS 1170196 1170461 . - . mRNA SPAC22A12.08c ; colour "7" ;
chromosome1 GeneDB CDS 1170504 1171270 . - . mRNA SPAC22A12.08c ; colour "7" ;
chromosome1 GeneDB CDS 1171362 1171856 . - . mRNA SPAC22A12.08c ; colour "7" ;
chromosome1 GeneDB CDS 1171900 1171956 . - . mRNA SPAC22A12.08c ; colour "7" ;
chromosome1 GeneDB CDS 1171999 1172126 . - . mRNA SPAC22A12.08c ; colour "7" ;
chromosome1 GeneDB misc_feature 1170462 1170475 . - . misc_feature unknown_987 ; colour "6" ; note "ctaaccttatctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1170498 1170503 . - . misc_feature unknown_988 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1171271 1171286 . - . misc_feature unknown_989 ; colour "6" ; note "ctaacagcttttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1171356 1171361 . - . misc_feature unknown_990 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1171857 1171868 . - . misc_feature unknown_991 ; colour "6" ; note "ctaacttgtaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1171894 1171899 . - . misc_feature unknown_992 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1171957 1171966 . - . misc_feature unknown_993 ; colour "6" ; note "ctaaccaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1171993 1171998 . - . misc_feature unknown_994 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1172125 1172171 . - . mRNA SPAC22A12.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1172351 1172469 . - . mRNA SPAC22A12.09c ; Alias "sap114" ; ID "SPAC22A12.09c" ; db_xref "SPD:35/35C02" ; systematic_id "SPAC22A12.09c" ; primary_name "sap114" ; gene "sap114 ||| SPAC22A12.09c" ; note "mRNA from AU006695" ;
chromosome1 GeneDB CDS_parts 1172470 1174155 . - . mRNA SPAC22A12.09c ; systematic_id "SPAC22A12.09c" ; colour "2" ; gene "sap114 ||| SPAC22A12.09c" ; Alias "sap114" ; db_xref "SPD:35/35C02" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0003723; RNA binding
GO:0005681; spliceosome complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL203W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sap114" ; product "splicing factor Sap114" ;
chromosome1 GeneDB CDS 1172470 1172789 . - . mRNA SPAC22A12.09c ; colour "2" ;
chromosome1 GeneDB CDS 1172833 1173207 . - . mRNA SPAC22A12.09c ; colour "2" ;
chromosome1 GeneDB CDS 1173293 1173609 . - . mRNA SPAC22A12.09c ; colour "2" ;
chromosome1 GeneDB CDS 1173673 1173979 . - . mRNA SPAC22A12.09c ; colour "2" ;
chromosome1 GeneDB CDS 1174029 1174155 . - . mRNA SPAC22A12.09c ; colour "2" ;
chromosome1 GeneDB misc_feature 1172790 1172803 . - . misc_feature unknown_995 ; colour "6" ; note "ctgaccctgtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1172827 1172832 . - . misc_feature unknown_996 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1173208 1173221 . - . misc_feature unknown_997 ; colour "6" ; note "ctaacttgtcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1173287 1173292 . - . misc_feature unknown_998 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1173610 1173629 . - . misc_feature unknown_999 ; colour "6" ; note "ctaattaaccgtgaatctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1173667 1173672 . - . misc_feature unknown_1000 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1173980 1173993 . - . misc_feature unknown_1001 ; colour "6" ; note "ctaacgtagcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1174023 1174028 . - . misc_feature unknown_1002 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1174536 1174570 . + . mRNA SPAC22A12.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1174571 1175781 . + . mRNA SPAC22A12.10 ; db_xref "SPD:22/22B04" ; systematic_id "SPAC22A12.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR123W and YNL130C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006646; phosphatidylethanolamine biosynthesis
GO:0004307; ethanolaminephosphotransferase activity
GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane
GO:0004142; diacylglycerol cholinephosphotransferase activity" ; gene "SPAC22A12.10" ; product "diacylglycerol cholinephosphotranferase/ diacylglycerol ethanolaminesphotranferase (predicted)" ; EC_number "2.7.8.1 ||| 2.7.8.2" ;
chromosome1 GeneDB CDS 1174571 1174707 . + . mRNA SPAC22A12.10 ; colour "7" ;
chromosome1 GeneDB CDS 1174758 1175781 . + . mRNA SPAC22A12.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 1174708 1174713 . + . misc_feature unknown_1003 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1174742 1174757 . + . misc_feature unknown_1004 ; colour "6" ; note "ctaactctttacttag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 1177065 1178807 . + . mRNA SPAC22A12.11 ; systematic_id "SPAC22A12.11" ; colour "2" ; gene "dak1 ||| SPAC22A12.11" ; Alias "dak1" ; db_xref "SPD:45/45G01" ; GO "GO:0005737; cytoplasm
GO:0004371; glycerone kinase activity
GO:0006071; glycerol metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML070W and YFL053W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=gene expression, regulated by glucose; db_xref=PMID:20396879; date=20100622" ; primary_name "dak1" ; product "dihydroxyacetone kinase Dak1" ; EC_number "2.7.1.29" ;
chromosome1 GeneDB CDS 1177065 1178807 . + . mRNA SPAC22A12.11 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1178883 1179208 . - . mRNA SPAC22A12.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22A12.12c" ; systematic_id "SPAC22A12.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1179209 1179931 . - . mRNA SPAC22A12.12c ; db_xref "SPD:08/08E12" ; systematic_id "SPAC22A12.12c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL142W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0000176; nuclear exosome (RNase complex)
GO:0000177; cytoplasmic exosome (RNase complex)
GO:0061013; nuclear-transcribed mRNA catabolism" ; gene "SPAC22A12.12c" ; product "exosome subunit Rrp40 (predicted)" ;
chromosome1 GeneDB CDS 1179209 1179931 . - . mRNA SPAC22A12.12c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1179930 1179983 . - . mRNA SPAC22A12.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1180258 1180478 . + . mRNA SPAC22A12.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1180479 1180841 . + . mRNA SPAC22A12.13 ; systematic_id "SPAC22A12.13" ; colour "7" ; gene "SPAC22A12.13 ||| mug84" ; Alias "mug84" ; db_xref "SPD:42/42B07" ; GO "GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0017176; phosphatidylinositol N- acetylglucosaminyltransferase activity
GO:0006506; GPI anchor biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR437W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug84" ; product "pig-P subunit (predicted)" ;
chromosome1 GeneDB CDS 1180479 1180841 . + . mRNA SPAC22A12.13 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1180842 1181082 . + . mRNA SPAC22A12.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22A12.13" ; systematic_id "SPAC22A12.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1181026 1181228 . - . mRNA SPAC22A12.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22A12.14c" ; systematic_id "SPAC22A12.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1181229 1182371 . - . mRNA SPAC22A12.14c ; db_xref "SPD:18/18A08" ; systematic_id "SPAC22A12.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR068W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human BDSC1 ortholog; date=20100718" ; colour "10" ; GO "GO:0005737; cytoplasm" ; gene "SPAC22A12.14c" ; product "BSD domain protein, unknown biological role" ;
chromosome1 GeneDB CDS 1181229 1182122 . - . mRNA SPAC22A12.14c ; colour "10" ;
chromosome1 GeneDB CDS 1182167 1182217 . - . mRNA SPAC22A12.14c ; colour "10" ;
chromosome1 GeneDB CDS 1182273 1182371 . - . mRNA SPAC22A12.14c ; colour "10" ;
chromosome1 GeneDB misc_feature 1182123 1182136 . - . misc_feature unknown_1005 ; colour "6" ; note "ctaaccgttcaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1182161 1182166 . - . misc_feature unknown_1006 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1182218 1182233 . - . misc_feature unknown_1007 ; colour "6" ; note "ctgacattttatacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1182267 1182272 . - . misc_feature unknown_1008 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1182370 1182456 . - . mRNA SPAC22A12.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1182787 1183311 . - . mRNA SPAC22A12.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22A12.15c" ; systematic_id "SPAC22A12.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1183312 1185303 . - . mRNA SPAC22A12.15c ; systematic_id "SPAC22A12.15c" ; colour "2" ; gene "SPAC22A12.15c" ; Alias "bip1" ; db_xref "SPD:27/27C11" ; synonym "bip" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, ER retention signal; residue=A660-L663; db_xref=PMID:1373379; cv=sequence_feature; date=20060612 ||| term=modification, glycosylated; cv=pt_mod; db_xref=PMID:8227200; date=20060823 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060823 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:1373379; date=19700101 ||| term=orthologous to S. cerevisiae YJL034W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005788; endoplasmic reticulum lumen
GO:0031965; nuclear membrane
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0005515; protein binding
GO:0030433; ER-associated protein catabolism
GO:0051084; posttranslational protein folding
GO:0034620; cellular response to unfolded protein
GO:0051082; unfolded protein binding" ; primary_name "bip1" ; product "ER heat shock protein BiP" ;
chromosome1 GeneDB CDS 1183312 1185303 . - . mRNA SPAC22A12.15c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1185302 1185483 . - . mRNA SPAC22A12.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1186253 1186313 . + . mRNA SPAC22A12.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22A12.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1186314 1187851 . + . mRNA SPAC22A12.16 ; systematic_id "SPAC22A12.16" ; colour "7" ; gene "SPAC22A12.16" ; note "Direction of reaction forming acetyl-CoA and oxaloacetate (PMID:10794176)" ; db_xref "KEGG:MAP00020; ||| SPD:24/24H08" ; GO "GO:0005737; cytoplasm
GO:0003878; ATP citrate synthase activity
GO:0006085; acetyl-CoA biosynthesis
GO:0006101; citrate metabolism
GO:0006633; fatty acid biosynthesis
GO:0006099; tricarboxylic acid cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "ATP-citrate synthase subunit 2 (predicted)" ; EC_number "2.3.3.8" ;
chromosome1 GeneDB CDS 1186314 1186337 . + . mRNA SPAC22A12.16 ; colour "7" ;
chromosome1 GeneDB CDS 1186397 1187851 . + . mRNA SPAC22A12.16 ; colour "7" ;
chromosome1 GeneDB misc_feature 1186338 1186343 . + . misc_feature unknown_1009 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome1 GeneDB intron 1186338 1186396 . + . intron SPAC22A12.16 ; db_xref "SPD:24/24H08" ; systematic_id "SPAC22A12.16" ; gene "SPAC22A12.16" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1186383 1186396 . + . misc_feature unknown_1010 ; colour "6" ; note "ctaacggcatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1187852 1187901 . + . mRNA SPAC22A12.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22A12.16" ; systematic_id "SPAC22A12.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1188325 1189110 . - . mRNA SPAC22A12.17c ; db_xref "SPD:09/09G09" ; systematic_id "SPAC22A12.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=related to S. pombe SPAC8E11.10 and SPCC1739.08C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "10" ; gene "SPAC22A12.17c" ; product "short chain dehydrogenase (predicted)" ;
chromosome1 GeneDB CDS 1188325 1189110 . - . mRNA SPAC22A12.17c ; colour "10" ;
chromosome1 GeneDB misc_RNA 1189967 1190942 . + . misc_RNA SPNCRNA.168 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.168" ; synonym "SPNG205" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_feature 1191169 1191289 . + . misc_feature unknown_1011 ; note "nominal overlap with cosmid SPAC4C5 and cosmid SPAC22A12" ;
chromosome1 GeneDB CDS_parts 1192545 1193613 . + . mRNA SPAC4C5.01 ; db_xref "SPD:16/16D10" ; systematic_id "SPAC4C5.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL033W-A; date=19700101 ||| term=haloacid dehalogenase-like hydrolase; date=20080529 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC4C5.01" ; product "haloacid dehalogenase-like hydrolase" ;
chromosome1 GeneDB CDS 1192545 1192592 . + . mRNA SPAC4C5.01 ; colour "10" ;
chromosome1 GeneDB CDS 1192662 1192704 . + . mRNA SPAC4C5.01 ; colour "10" ;
chromosome1 GeneDB CDS 1192779 1192841 . + . mRNA SPAC4C5.01 ; colour "10" ;
chromosome1 GeneDB CDS 1192916 1193010 . + . mRNA SPAC4C5.01 ; colour "10" ;
chromosome1 GeneDB CDS 1193062 1193145 . + . mRNA SPAC4C5.01 ; colour "10" ;
chromosome1 GeneDB CDS 1193197 1193613 . + . mRNA SPAC4C5.01 ; colour "10" ;
chromosome1 GeneDB misc_feature 1192593 1192598 . + . misc_feature unknown_1012 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1192640 1192661 . + . misc_feature unknown_1013 ; colour "6" ; note "ttaacaatcactctttttacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1192705 1192710 . + . misc_feature unknown_1014 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1192757 1192778 . + . misc_feature unknown_1015 ; colour "6" ; note "ctaatctttattttttttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1192842 1192847 . + . misc_feature unknown_1016 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1192898 1192915 . + . misc_feature unknown_1017 ; colour "6" ; note "ctaacttgcgatacgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1193011 1193016 . + . misc_feature unknown_1018 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1193047 1193061 . + . misc_feature unknown_1019 ; colour "6" ; note "ctaactttctgaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1193146 1193151 . + . misc_feature unknown_1020 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1193181 1193196 . + . misc_feature unknown_1021 ; colour "6" ; note "ctaataccgcaaattataatatgaag, splice branch and accept or" ;
chromosome1 GeneDB 3'-UTR 1193614 1193756 . + . mRNA SPAC4C5.01 ; ID "SPAC4C5.01" ; db_xref "SPD:16/16D10" ; systematic_id "SPAC4C5.01" ; gene "SPAC4C5.01" ; note "mRNA from AU009297" ;
chromosome1 GeneDB CDS_parts 1194197 1195036 . - . mRNA SPAC4C5.02c ; systematic_id "SPAC4C5.02c" ; colour "2" ; gene "ryh1 ||| hos1 ||| SPAC4C5.02c" ; Alias "ryh1" ; db_xref "SPD:11/11A03" ; synonym "hos1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:2112088; date=20060220 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:17287513; date=20100917 ||| term=orthologous to S. cerevisiae YLR262C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, prenylated; qualifier=predicted; cv=pt_mod; residue=199-201; date=20090729" ; GO "GO:0005794; Golgi apparatus
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006886; intracellular protein transport
GO:0071470; cellular response to osmotic stress
GO:0042147; retrograde transport, endosome to Golgi
GO:0007264; small GTPase mediated signal transduction" ; primary_name "ryh1" ; product "GTPase Ryh1" ;
chromosome1 GeneDB CDS 1194197 1194407 . - . mRNA SPAC4C5.02c ; colour "2" ;
chromosome1 GeneDB CDS 1194520 1194631 . - . mRNA SPAC4C5.02c ; colour "2" ;
chromosome1 GeneDB CDS 1194711 1194870 . - . mRNA SPAC4C5.02c ; colour "2" ;
chromosome1 GeneDB CDS 1194914 1195036 . - . mRNA SPAC4C5.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 1194408 1194422 . - . misc_feature unknown_1022 ; colour "6" ; note "ctaacggtggtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1194514 1194519 . - . misc_feature unknown_1023 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1194632 1194645 . - . misc_feature unknown_1024 ; colour "6" ; note "ctaactacttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1194705 1194710 . - . misc_feature unknown_1025 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1194871 1194885 . - . misc_feature unknown_1026 ; colour "6" ; note "ctaacagggtccaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1194908 1194913 . - . misc_feature unknown_1027 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1195035 1195161 . - . mRNA SPAC4C5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4C5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 1195592 1195663 . - . tRNA SPATRNAALA.02 ; systematic_id "SPATRNAALA.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033408; TCG codon-amino acid adaptor activity" ; gene "SPATRNAALA.02" ; product "tRNA Alanine" ; note "tRNA Ala anticodon TGC, Cove score 68.49" ;
chromosome1 GeneDB 5'-UTR 1196723 1196994 . + . mRNA SPAC4C5.03 ; ID "SPAC4C5.03" ; systematic_id "SPAC4C5.03" ; gene "SPAC4C5.03" ; note "mRNA from AU006888" ;
chromosome1 GeneDB CDS_parts 1196995 1197903 . + . mRNA SPAC4C5.03 ; db_xref "SPD:43/43E08" ; systematic_id "SPAC4C5.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=PQ loop; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC4C5.03" ; product "CTNS domain protein (SMART)" ;
chromosome1 GeneDB CDS 1196995 1197903 . + . mRNA SPAC4C5.03 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1197904 1198185 . + . mRNA SPAC4C5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4C5.03" ; systematic_id "SPAC4C5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1198459 1199619 . + . mRNA SPAC4C5.04 ; systematic_id "SPAC4C5.04" ; colour "2" ; gene "rad31 ||| uba4 ||| SPAC4C5.04" ; Alias "rad31" ; db_xref "SPD:18/18C10" ; synonym "uba4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9092625; date=19700101 ||| term=phenotype, cell morphology, elongated cells; allele=rad31-1; db_xref=PMID:9092625; date=20100802 ||| term=UBA domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YPR180W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0031510; SUMO activating enzyme complex
GO:0005634; nucleus
GO:0019948; SUMO activating enzyme activity
GO:0016925; protein sumoylation
GO:0016925; protein sumoylation
GO:0006974; response to DNA damage stimulus
GO:0007346; regulation of mitotic cell cycle" ; primary_name "rad31" ; product "SUMO E1-like activator enzyme Rad31" ;
chromosome1 GeneDB CDS 1198459 1198541 . + . mRNA SPAC4C5.04 ; colour "2" ;
chromosome1 GeneDB CDS 1198592 1199020 . + . mRNA SPAC4C5.04 ; colour "2" ;
chromosome1 GeneDB CDS 1199074 1199219 . + . mRNA SPAC4C5.04 ; colour "2" ;
chromosome1 GeneDB CDS 1199298 1199397 . + . mRNA SPAC4C5.04 ; colour "2" ;
chromosome1 GeneDB CDS 1199454 1199619 . + . mRNA SPAC4C5.04 ; colour "2" ;
chromosome1 GeneDB misc_feature 1198542 1198547 . + . misc_feature unknown_1028 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1198577 1198591 . + . misc_feature unknown_1029 ; colour "6" ; note "ctgacaaaattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1199021 1199026 . + . misc_feature unknown_1030 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1199061 1199073 . + . misc_feature unknown_1031 ; colour "6" ; note "cttacatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1199398 1199403 . + . misc_feature unknown_1032 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1199440 1199453 . + . misc_feature unknown_1033 ; colour "6" ; note "ctaattttatttag, splice branch and acceptor" ;
chromosome1 GeneDB snoRNA 1200168 1200253 . + . snoRNA SPSNORNA.07 ; Alias "snR41" ; systematic_id "SPSNORNA.07" ; controlled_curation "term=orthologous to S. cerevisiae snR41; date=20061113" ; primary_name "snR41" ; gene "snR41 ||| snR41-sno ||| SPSNORNA.07" ; product "small nucleolar RNA snR41 (predicted)" ;
chromosome1 GeneDB snoRNA 1200394 1200501 . + . snoRNA SPSNORNA.08 ; Alias "snR70" ; systematic_id "SPSNORNA.08" ; controlled_curation "term=orthologous to S. cerevisiae snR70; date=20061113" ; gene "snR70-sno ||| snR70 ||| SPSNORNA.08" ; primary_name "snR70" ; product "small nucleolar RNA snR70 (predicted)" ;
chromosome1 GeneDB snoRNA 1200646 1200729 . + . snoRNA SPSNORNA.09 ; Alias "snR51b" ; systematic_id "SPSNORNA.09" ; controlled_curation "term=orthologous to S. cerevisiae snR51; date=20061113" ; primary_name "snR51b" ; gene "snR51b-sno ||| snR51b ||| SPSNORNA.09" ; product "small nucleolar RNA snR51b (predicted)" ;
chromosome1 GeneDB 3'-UTR 1200916 1201076 . - . mRNA SPAC10F6.01c ; Alias "sir1" ; ID "SPAC10F6.01c" ; db_xref "SPD:30/30H02" ; systematic_id "SPAC10F6.01c" ; primary_name "sir1" ; gene "sir1 ||| SPAC4C5.05c ||| SPAC10F6.01c" ; note "mRNA from AU009904" ;
chromosome1 GeneDB CDS_parts 1201077 1205498 . - . mRNA SPAC10F6.01c ; systematic_id "SPAC10F6.01c" ; colour "2" ; gene "sir1 ||| SPAC4C5.05c ||| SPAC10F6.01c" ; Alias "sir1" ; db_xref "SPD:30/30H02" ; synonym "SPAC4C5.05c" ; GO "GO:0000103; sulfate assimilation
GO:0004783; sulfite reductase (NADPH) activity
GO:0000097; sulfur amino acid biosynthesis
GO:0005737; cytoplasm
GO:0009337; sulfite reductase complex (NADPH)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR137C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "sir1" ; product "sulfite reductase Sir1" ; EC_number "1.8.1.2 ||| 1.8.7.1" ;
chromosome1 GeneDB CDS 1201077 1205498 . - . mRNA SPAC10F6.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 1203235 1206668 . + . misc_feature unknown_1034 ; note "nominal overlap with cosmid SPAC10F6 and cosmid SPAC4C5" ;
chromosome1 GeneDB 5'-UTR 1205497 1205998 . - . mRNA SPAC10F6.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC10F6.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1206875 1206924 . - . mRNA SPAC10F6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC10F6.02c" ; systematic_id "SPAC10F6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1206925 1210484 . - . mRNA SPAC10F6.02c ; systematic_id "SPAC10F6.02c" ; colour "2" ; gene "prp22 ||| SPAC10F6.02c" ; Alias "prp22" ; db_xref "SPD:48/48D08" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0000390; spliceosome disassembly
GO:0005681; spliceosome complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YER013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "prp22" ; product "ATP-dependent RNA helicase Prp22" ;
chromosome1 GeneDB CDS 1206925 1210358 . - . mRNA SPAC10F6.02c ; colour "2" ;
chromosome1 GeneDB CDS 1210412 1210484 . - . mRNA SPAC10F6.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 1210359 1210372 . - . misc_feature unknown_1035 ; colour "6" ; note "ttaaccaaatctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1210406 1210411 . - . misc_feature unknown_1036 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1210483 1210561 . - . mRNA SPAC10F6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC10F6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1211195 1211445 . - . mRNA SPAC10F6.03c ; Alias "cts1" ; ID "SPAC10F6.03c" ; db_xref "SPD:37/37B11" ; systematic_id "SPAC10F6.03c" ; primary_name "cts1" ; gene "cts1 ||| SPAC10F6.03c" ; note "mRNA from AU013516" ;
chromosome1 GeneDB CDS_parts 1211446 1213468 . - . mRNA SPAC10F6.03c ; systematic_id "SPAC10F6.03c" ; colour "7" ; gene "cts1 ||| SPAC10F6.03c" ; Alias "cts1" ; db_xref "SPD:37/37B11" ; GO "GO:0003883; CTP synthase activity
GO:0006241; CTP biosynthesis
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0005829; cytosol
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL039C and YJR103W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cts1" ; product "CTP synthase Cts1 (predicted)" ; EC_number "6.3.4.2" ;
chromosome1 GeneDB CDS 1211446 1211984 . - . mRNA SPAC10F6.03c ; colour "7" ;
chromosome1 GeneDB CDS 1212205 1213468 . - . mRNA SPAC10F6.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 1211985 1211997 . - . misc_feature unknown_1037 ; colour "6" ; note "ctaacatttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1212199 1212204 . - . misc_feature unknown_1038 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1213467 1213476 . - . mRNA SPAC10F6.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC10F6.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1213726 1214781 . + . mRNA SPAC10F6.04 ; db_xref "SPD:16/16B05" ; systematic_id "SPAC10F6.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=regulator of condensation (RCC1) domains; date=19700101 ||| term=orthologous to S. cerevisiae YAL020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0007017; microtubule-based process
GO:0006400; tRNA modification" ; gene "SPAC10F6.04" ; product "RCC domain protein Ats1 (predicted)" ;
chromosome1 GeneDB CDS 1213726 1214781 . + . mRNA SPAC10F6.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1214788 1215120 . - . mRNA SPAC10F6.05c ; Alias "ubc6" ; ID "SPAC10F6.05c" ; db_xref "SPD:10/10C08" ; systematic_id "SPAC10F6.05c" ; primary_name "ubc6" ; gene "ubc6 ||| SPAC10F6.05c" ; note "mRNA from SPD248" ;
chromosome1 GeneDB CDS_parts 1215121 1215928 . - . mRNA SPAC10F6.05c ; systematic_id "SPAC10F6.05c" ; colour "7" ; gene "ubc6 ||| SPAC10F6.05c" ; Alias "ubc6" ; db_xref "SPD:10/10C08" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0004842; ubiquitin-protein ligase activity
GO:0030433; ER-associated protein catabolic process
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ubc6" ; product "ubiquitin conjugating enzyme Ubc6 (predicted)" ; EC_number "6.3.2.19" ;
chromosome1 GeneDB CDS 1215121 1215638 . - . mRNA SPAC10F6.05c ; colour "7" ;
chromosome1 GeneDB CDS 1215723 1215861 . - . mRNA SPAC10F6.05c ; colour "7" ;
chromosome1 GeneDB CDS 1215902 1215928 . - . mRNA SPAC10F6.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 1215639 1215654 . - . misc_feature unknown_1039 ; colour "6" ; note "ctaactttgcgtacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1215639 1215722 . - . intron SPAC10F6.05c ; Alias "ubc6" ; db_xref "SPD:10/10C08" ; systematic_id "SPAC10F6.05c" ; primary_name "ubc6" ; gene "ubc6 ||| SPAC10F6.05c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1215717 1215722 . - . misc_feature unknown_1040 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1215862 1215874 . - . misc_feature unknown_1041 ; colour "6" ; note "ctaattattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1215896 1215901 . - . misc_feature unknown_1042 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1215927 1215952 . - . mRNA SPAC10F6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC10F6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1217153 1217170 . + . mRNA SPAC10F6.06 ; Alias "vip1" ; ID "SPAC10F6.06" ; db_xref "EMBL:Y13635" ; systematic_id "SPAC10F6.06" ; gene "vip1 ||| SPAC10F6.06" ; primary_name "vip1" ;
chromosome1 GeneDB CDS_parts 1217171 1217944 . + . mRNA SPAC10F6.06 ; systematic_id "SPAC10F6.06" ; colour "10" ; gene "vip1 ||| SPAC10F6.06" ; Alias "vip1" ; db_xref "SPD:09/09E11" ; GO "GO:0003723; RNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "vip1" ; product "RNA-binding protein Vip1" ;
chromosome1 GeneDB CDS 1217171 1217944 . + . mRNA SPAC10F6.06 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1217945 1218081 . + . mRNA SPAC10F6.06 ; Alias "vip1" ; ID "SPAC10F6.06" ; db_xref "EMBL:Y13635 ||| SPD:09/09E11" ; systematic_id "SPAC10F6.06" ; gene "vip1 ||| SPAC10F6.06" ; primary_name "vip1" ;
chromosome1 GeneDB CDS_parts 1218321 1218887 . - . mRNA SPAC10F6.07c ; systematic_id "SPAC10F6.07c" ; colour "8" ; gene "SPAC10F6.07c ||| mug94" ; db_xref "SPD:05/05H12" ; Alias "mug94" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug94" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1218321 1218887 . - . mRNA SPAC10F6.07c ; colour "8" ;
chromosome1 GeneDB misc_RNA 1219252 1220071 . + . misc_RNA SPNCRNA.554 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.554" ; synonym "SPNG2AF217" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB CDS_parts 1219667 1220797 . - . mRNA SPAC10F6.08c ; systematic_id "SPAC10F6.08c" ; colour "2" ; gene "SPAC10F6.08c ||| nht1" ; Alias "nht1" ; db_xref "SPD:17/17G07" ; GO "GO:0003677; DNA binding
GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "nht1" ; product "Ino80 complex HMG box protein Nht1" ;
chromosome1 GeneDB CDS 1219667 1220440 . - . mRNA SPAC10F6.08c ; colour "2" ;
chromosome1 GeneDB CDS 1220495 1220703 . - . mRNA SPAC10F6.08c ; colour "2" ;
chromosome1 GeneDB CDS 1220755 1220797 . - . mRNA SPAC10F6.08c ; colour "2" ;
chromosome1 GeneDB misc_feature 1220441 1220454 . - . misc_feature unknown_1043 ; colour "6" ; note "ctaatcatatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1220489 1220494 . - . misc_feature unknown_1044 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1220704 1220718 . - . misc_feature unknown_1045 ; colour "6" ; note "ctaatgaatactcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1220749 1220754 . - . misc_feature unknown_1046 ; colour "6" ; note "gtgaat, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1220796 1220847 . - . mRNA SPAC10F6.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC10F6.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1221177 1221208 . - . mRNA SPAC10F6.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC10F6.09c" ; systematic_id "SPAC10F6.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1221209 1224836 . - . mRNA SPAC10F6.09c ; systematic_id "SPAC10F6.09c" ; colour "2" ; gene "psm3 ||| smc3 ||| SPAC10F6.09c" ; Alias "psm3" ; db_xref "SPD:39/39B08" ; synonym "smc3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11069892; date=19700101 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=phenotype, spindle elongation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=protein sequence feature, coiled-coil; date=19700101 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YJL074C; date=19700101 ||| term=modification, acetylated; cv=pt_mod; evidence=ISS; date=20080807 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=disease associated, Cornelia de Lange syndrome; date=20090213 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000794; condensed nuclear chromosome
GO:0030892; mitotic cohesin complex
GO:0000790; nuclear chromatin
GO:0016887; ATPase activity
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0007064; mitotic sister chromatid cohesion
GO:0016567; protein ubiquitination" ; primary_name "psm3" ; product "mitotic cohesin complex subunit Psm3" ;
chromosome1 GeneDB CDS 1221209 1224778 . - . mRNA SPAC10F6.09c ; colour "2" ;
chromosome1 GeneDB CDS 1224822 1224836 . - . mRNA SPAC10F6.09c ; colour "2" ;
chromosome1 GeneDB misc_feature 1224779 1224795 . - . misc_feature unknown_1047 ; colour "6" ; note "ttaactgatttattaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1224816 1224821 . - . misc_feature unknown_1048 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1224835 1224863 . - . mRNA SPAC10F6.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC10F6.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1225522 1225598 . + . mRNA SPAC10F6.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC10F6.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1225599 1227279 . + . mRNA SPAC10F6.10 ; db_xref "SPD:35/35B09" ; systematic_id "SPAC10F6.10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to A. nidulans SUDD suppressor of bimD6 chromosome-spindle attachment defect; date=19700101 ||| term=orthologous to S. cerevisiae YOR119C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0007346; regulation of mitotic cell cycle
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000070; mitotic sister chromatid segregation" ; gene "SPAC10F6.10" ; product "protein kinase, RIO family (predicted)" ;
chromosome1 GeneDB CDS 1225599 1225725 . + . mRNA SPAC10F6.10 ; colour "7" ;
chromosome1 GeneDB CDS 1225811 1225936 . + . mRNA SPAC10F6.10 ; colour "7" ;
chromosome1 GeneDB CDS 1225967 1227279 . + . mRNA SPAC10F6.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 1225726 1225731 . + . misc_feature unknown_1049 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1225792 1225810 . + . misc_feature unknown_1050 ; colour "6" ; note "ttaataacatttttactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1225937 1225942 . + . misc_feature unknown_1051 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1225953 1225966 . + . misc_feature unknown_1052 ; colour "6" ; note "ttaactgctcatag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 1227416 1228861 . - . mRNA SPAC10F6.11c ; systematic_id "SPAC10F6.11c" ; colour "2" ; gene "SPAC10F6.11c" ; Alias "atg17" ; db_xref "SPD:23/23C08" ; GO "GO:0030295; protein kinase activator activity
GO:0000045; autophagic vacuole formation
GO:0005737; cytoplasm
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032947; protein complex scaffold
GO:0007127; meiosis I
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR423C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "atg17" ; product "autophagy associated protein kinase activator Atg17" ;
chromosome1 GeneDB CDS 1227416 1228861 . - . mRNA SPAC10F6.11c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1229151 1229359 . - . mRNA SPAC10F6.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC10F6.12c" ; systematic_id "SPAC10F6.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1229360 1230070 . - . mRNA SPAC10F6.12c ; systematic_id "SPAC10F6.12c" ; colour "2" ; gene "mam4 ||| SPAC10F6.12c" ; Alias "mam4" ; db_xref "SPD:43/43A01" ; GO "GO:0004671; protein-S-isoprenylcysteine O- methyltransferase activity
GO:0071432; peptide mating pheromone maturation involved in conjugation with cellular fusion
GO:0005789; endoplasmic reticulum membrane
GO:0034613; cellular protein localization
GO:0000749; response to pheromone during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR410C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "mam4" ; product "protein-S isoprenylcysteine O-methyltransferase Mam4" ; EC_number "2.1.1.100" ;
chromosome1 GeneDB CDS 1229360 1230070 . - . mRNA SPAC10F6.12c ; colour "2" ;
chromosome1 GeneDB misc_feature 1230037 1230330 . + . misc_feature unknown_1053 ; note "potential CDS?" ;
chromosome1 GeneDB 5'-UTR 1230069 1230250 . - . mRNA SPAC10F6.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC10F6.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1230640 1230787 . - . mRNA SPAC10F6.13c ; ID "SPAC10F6.13c" ; db_xref "SPD:19/19E10" ; systematic_id "SPAC10F6.13c" ; gene "SPAC10F6.13c" ; note "mRNA from AU012909" ;
chromosome1 GeneDB CDS_parts 1230788 1232017 . - . mRNA SPAC10F6.13c ; db_xref "SPD:19/19E10" ; systematic_id "SPAC10F6.13c" ; colour "7" ; GO "GO:0006533; aspartate catabolism
GO:0006532; aspartate biosynthesis
GO:0004069; aspartate transaminase activity
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; gene "SPAC10F6.13c" ; product "aspartate aminotransferase (predicted)" ; EC_number "2.6.1.1" ;
chromosome1 GeneDB CDS 1230788 1232017 . - . mRNA SPAC10F6.13c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1232288 1232315 . - . mRNA SPAC10F6.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC10F6.14c" ; systematic_id "SPAC10F6.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1232316 1233923 . - . mRNA SPAC10F6.14c ; db_xref "SPD:45/45C11" ; systematic_id "SPAC10F6.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0016301; kinase activity
GO:0034619; chaperone-mediated protein complex assembly
GO:0048197; cellular macromolecular complex assembly" ; gene "SPAC10F6.14c" ; product "ABC1 kinase family protein (predicted)" ;
chromosome1 GeneDB CDS 1232316 1233923 . - . mRNA SPAC10F6.14c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1233922 1234069 . - . mRNA SPAC10F6.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC10F6.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 1234451 1234849 . + . misc_RNA SPNCRNA.82 ; systematic_id "SPNCRNA.82" ; db_xref "EMBL:AU010730 ||| EMBL:EF424786" ; Alias "mrp1" ; synonym "mrp-1" ; GO "GO:0000171; ribonuclease MRP activity
GO:0006364; rRNA processing
GO:0000172; ribonuclease MRP complex
GO:0008033; tRNA processing
GO:0032042; mitochondrial DNA metabolic process
GO:0006364; rRNA processing" ; controlled_curation "term=; evidence=IDA; date=20050412 ||| term=orthologous to S. cerevisiae S000007436; evidence=ISS; db_xref=PMID:8553696; date=20070206 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8553696; date=20070206 ||| term=warning, gene structure updated; cv=warning; date=20070722" ; primary_name "mrp1" ; product "RNAse MRP" ;
chromosome1 GeneDB snoRNA 1234963 1235045 . + . snoRNA SPSNORNA.10 ; Alias "snoZ16" ; db_xref "EMBL:AJ010685" ; systematic_id "SPSNORNA.10" ; controlled_curation "term=orthologous to S. cerevisiae snR66 and snR13; date=20070104" ; primary_name "snoZ16" ; gene "snoZ16 ||| SPSNORNA.10" ; product "small nucleolar RNA Z16 (predicted)" ;
chromosome1 GeneDB CDS_parts 1235667 1236965 . + . mRNA SPAC10F6.15 ; db_xref "SPD:22/22E08" ; systematic_id "SPAC10F6.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "12" ; gene "SPAC10F6.15" ; product "S. pombe specific UPF0300 family protein 1" ;
chromosome1 GeneDB CDS 1235667 1236965 . + . mRNA SPAC10F6.15 ; colour "12" ;
chromosome1 GeneDB misc_RNA 1237146 1238641 . + . misc_RNA SPNCRNA.432 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.432" ; synonym "SPNG214" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 1238896 1239424 . + . mRNA SPAC10F6.16 ; systematic_id "SPAC10F6.16" ; colour "7" ; gene "SPAC10F6.16 ||| mug134" ; Alias "mug134" ; db_xref "SPD:05/05D01" ; synonym "igo1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR132W-A and YNL157W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000932; cytoplasmic mRNA processing body
GO:0048255; mRNA stabilization
GO:0070314; G1 to G0 transition" ; primary_name "mug134" ; product "mRNA stability protein Igo1 (predicted)" ;
chromosome1 GeneDB CDS 1238896 1238979 . + . mRNA SPAC10F6.16 ; colour "7" ;
chromosome1 GeneDB CDS 1239025 1239108 . + . mRNA SPAC10F6.16 ; colour "7" ;
chromosome1 GeneDB CDS 1239173 1239424 . + . mRNA SPAC10F6.16 ; colour "7" ;
chromosome1 GeneDB misc_feature 1238980 1238985 . + . misc_feature unknown_1054 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1238980 1239024 . + . intron SPAC10F6.16 ; db_xref "SPD:05/05D01" ; systematic_id "SPAC10F6.16" ; gene "SPAC10F6.16 ||| mug134" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1239012 1239024 . + . misc_feature unknown_1055 ; colour "6" ; note "ttaactgaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1239109 1239114 . + . misc_feature unknown_1056 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB intron 1239109 1239172 . + . intron SPAC10F6.16 ; db_xref "SPD:05/05D01" ; systematic_id "SPAC10F6.16" ; gene "SPAC10F6.16 ||| mug134" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1239153 1239172 . + . misc_feature unknown_1057 ; colour "6" ; note "ctaactctacccctttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1239425 1240185 . + . mRNA SPAC10F6.16 ; ID "SPAC10F6.16" ; db_xref "SPD:05/05D01" ; systematic_id "SPAC10F6.16" ; gene "SPAC10F6.16 ||| mug134" ; note "mRNA from SPAB1289" ;
chromosome1 GeneDB CDS_parts 1240321 1241655 . - . mRNA SPAC10F6.17c ; systematic_id "SPAC10F6.17c" ; colour "7" ; gene "SPAC56E4.01c ||| SPAC10F6.17c" ; Alias "SPAC56E4.01c" ; db_xref "SPD:20/20F08" ; synonym "SPAC56E4.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR090C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005739; mitochondrion
GO:0004741; [pyruvate dehydrogenase (lipoamide)] phosphatase activity
GO:0016311; dephosphorylation
GO:0006091; generation of precursor metabolites and energy" ; primary_name "SPAC56E4.01c" ; product "mitochondrial pyruvate dehydrogenase (lipoamide) phosphatase (predicted)" ; EC_number "3.1.3.43 ||| 3.1.3.16" ;
chromosome1 GeneDB CDS 1240321 1241655 . - . mRNA SPAC10F6.17c ; colour "7" ;
chromosome1 GeneDB misc_feature 1241320 1241373 . + . misc_feature unknown_1058 ; note "nominal overlap with cosmid SPAC10F6 and cosmid SPAC56E4" ;
chromosome1 GeneDB 5'-UTR 1241654 1241690 . - . mRNA SPAC10F6.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC10F6.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1242076 1242294 . - . mRNA SPAC56E4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56E4.02c" ; systematic_id "SPAC56E4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1242295 1242783 . - . mRNA SPAC56E4.02c ; systematic_id "SPAC56E4.02c" ; colour "7" ; gene "alg13 ||| SPAC56E4.02c" ; Alias "alg13" ; db_xref "SPD:04/04F02" ; GO "GO:0005783; endoplasmic reticulum
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0004577; N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL047W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "alg13" ; product "N-acetylglucosaminyldiphosphodolichol N- acetylglucosaminyltransferase Alg13 (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB CDS 1242295 1242783 . - . mRNA SPAC56E4.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1242782 1243012 . - . mRNA SPAC56E4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC56E4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1243890 1244050 . + . mRNA SPAC56E4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC56E4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1244051 1245475 . + . mRNA SPAC56E4.03 ; db_xref "SPD:44/44F03" ; systematic_id "SPAC56E4.03" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0009072; aromatic amino acid family metabolism
GO:0008793; aromatic-amino-acid transaminase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL202W and YHR137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPAC56E4.03" ; product "aromatic aminotransferase (predicted)" ; EC_number "2.6.1.-" ;
chromosome1 GeneDB CDS 1244051 1245475 . + . mRNA SPAC56E4.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1245476 1245706 . + . mRNA SPAC56E4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56E4.03" ; systematic_id "SPAC56E4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1245816 1246094 . - . mRNA SPAC56E4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56E4.04c" ; systematic_id "SPAC56E4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1246095 1253559 . - . mRNA SPAC56E4.04c ; systematic_id "SPAC56E4.04c" ; colour "2" ; gene "cut6 ||| SPAC56E4.04c" ; db_xref "SPD:34/34C12" ; Alias "cut6" ; GO "GO:0005829; cytosol
GO:0005524; ATP binding
GO:0003989; acetyl-CoA carboxylase activity
GO:0004075; biotin carboxylase activity
GO:0000920; cell separation during cytokinesis
GO:0042759; long-chain fatty acid biosynthesis
GO:0000280; nuclear division" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8769419; date=19700101 ||| term=orthologous to S. cerevisiae YNR016C and YMR207C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, biotinylated; attribution=pers. comm. J. Stolz; date=20100304" ; primary_name "cut6" ; product "acetyl-CoA/biotin carboxylase" ; EC_number "6.3.4.14" ;
chromosome1 GeneDB CDS 1246095 1252807 . - . mRNA SPAC56E4.04c ; colour "2" ;
chromosome1 GeneDB CDS 1253430 1253559 . - . mRNA SPAC56E4.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1255497 1255590 . + . mRNA SPAC56E4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC56E4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1255591 1256227 . + . mRNA SPAC56E4.05 ; systematic_id "SPAC56E4.05" ; colour "10" ; gene "SPAC56E4.05 ||| mug69" ; db_xref "SPD:07/07C10" ; Alias "mug69" ; GO "GO:0016020; membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR065C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug69" ; product "ENV10 family protein (predicted)" ;
chromosome1 GeneDB CDS 1255591 1255953 . + . mRNA SPAC56E4.05 ; colour "10" ;
chromosome1 GeneDB CDS 1256012 1256227 . + . mRNA SPAC56E4.05 ; colour "10" ;
chromosome1 GeneDB misc_feature 1255954 1255959 . + . misc_feature unknown_1059 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1255996 1256011 . + . misc_feature unknown_1060 ; colour "6" ; note "ctaacccttcatctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1256228 1256377 . + . mRNA SPAC56E4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56E4.05" ; systematic_id "SPAC56E4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1256432 1256565 . - . mRNA SPAC56E4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56E4.06c" ; systematic_id "SPAC56E4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1256566 1258401 . - . mRNA SPAC56E4.06c ; systematic_id "SPAC56E4.06c" ; colour "2" ; gene "ggt2 ||| SPAC56E4.06c" ; Alias "ggt2" ; db_xref "SPD:36/36G04" ; GO "GO:0003840; gamma-glutamyltransferase activity
GO:0006751; glutathione catabolism
GO:0034599; cellular response to oxidative stress
GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, glutathionuria; date=20060724 ||| term=orthologous to S. cerevisiae YLR299W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "ggt2" ; product "gamma-glutamyltranspeptidase Ggt2" ; EC_number "2.3.2.2" ;
chromosome1 GeneDB CDS 1256566 1258401 . - . mRNA SPAC56E4.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1258400 1258686 . - . mRNA SPAC56E4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC56E4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1259235 1259364 . + . mRNA SPAC56E4.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC56E4.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1259365 1260072 . + . mRNA SPAC56E4.07 ; db_xref "SPD:08/08C12" ; systematic_id "SPAC56E4.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827" ; colour "10" ; gene "SPAC56E4.07" ; product "N-acetyltransferase (predicted)" ;
chromosome1 GeneDB CDS 1259365 1260072 . + . mRNA SPAC56E4.07 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1260073 1260227 . + . mRNA SPAC56E4.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC56E4.07" ; systematic_id "SPAC56E4.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1260335 1260972 . - . mRNA SPAC1420.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1420.01c" ; systematic_id "SPAC1420.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1260973 1262760 . - . mRNA SPAC1420.01c ; systematic_id "SPAC1420.01c" ; colour "7" ; gene "SPAC56E4.08c ||| SPAC1420.01c" ; Alias "SPAC56E4.08c" ; db_xref "SPD:36/36D01" ; synonym "SPAC56E4.08c" ; GO "GO:0031930; mitochondrial signaling pathway
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL076W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "SPAC56E4.08c" ; product "DUF1752 family protein, involved in regulation of transcription (predicted)" ;
chromosome1 GeneDB CDS 1260973 1262609 . - . mRNA SPAC1420.01c ; colour "7" ;
chromosome1 GeneDB CDS 1262655 1262760 . - . mRNA SPAC1420.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 1261480 1262109 . + . misc_feature unknown_1061 ; note "nominal overlap with cosmid SPAC1420 and cosmid SPAC56E4" ;
chromosome1 GeneDB misc_feature 1262610 1262628 . - . misc_feature unknown_1062 ; colour "6" ; note "ttaactcttttttttctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1262610 1262654 . - . intron SPAC1420.01c ; Alias "SPAC56E4.08c" ; db_xref "SPD:36/36D01" ; systematic_id "SPAC1420.01c" ; primary_name "SPAC56E4.08c" ; gene "SPAC56E4.08c ||| SPAC1420.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1262649 1262654 . - . misc_feature unknown_1063 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1262761 1262985 . - . mRNA SPAC1420.01c ; Alias "SPAC56E4.08c" ; ID "SPAC1420.01c" ; systematic_id "SPAC1420.01c" ; primary_name "SPAC56E4.08c" ; gene "SPAC56E4.08c ||| SPAC1420.01c" ; note "mRNA from AU008250" ;
chromosome1 GeneDB 3'-UTR 1263803 1263901 . - . mRNA SPAC1420.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1420.02c" ; systematic_id "SPAC1420.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1263902 1265542 . - . mRNA SPAC1420.02c ; systematic_id "SPAC1420.02c" ; colour "2" ; gene "cct5 ||| SPAC1420.02c" ; Alias "cct5" ; db_xref "SPD:26/26B08" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR064W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cct5" ; product "chaperonin-containing T-complex epsilon subunit Cct5" ;
chromosome1 GeneDB CDS 1263902 1265542 . - . mRNA SPAC1420.02c ; colour "2" ;
chromosome1 GeneDB intron 1264454 1264857 . - . intron SPAC1420.02c ; Alias "cct5" ; db_xref "SPD:26/26B08" ; systematic_id "SPAC1420.02c" ; primary_name "cct5" ; gene "cct5 ||| SPAC1420.02c" ; note "confirmed intron - but ends in GAG and disrupts ORF" ;
chromosome1 GeneDB 5'-UTR 1265541 1265727 . - . mRNA SPAC1420.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1420.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 1265809 1266166 . - . LTR unknown_1064 ; note "TF1 LTR" ;
chromosome1 GeneDB 5'-UTR 1266232 1266268 . + . mRNA SPAC1420.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1420.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1266269 1267647 . + . mRNA SPAC1420.03 ; systematic_id "SPAC1420.03" ; colour "2" ; gene "rpn501 ||| rpn5-a ||| rpn5 ||| SPAC1420.03" ; note "expression level is tightly controlled so that deletion of either copy is compensated (PMID 12783882)" ; Alias "rpn501" ; db_xref "SPD:21/21D01" ; synonym "rpn5-a ||| rpn5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL147W; date=19700101 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "; nuclear periphery
GO:0000502; proteasome complex (sensu Eukaryota)
GO:0005515; protein binding
GO:0000278; mitotic cell cycle
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0043248; proteasome assembly
GO:0031144; proteasome localization" ; primary_name "rpn501" ; product "19S proteasome regulatory subunit Rpn501" ;
chromosome1 GeneDB CDS 1266269 1266352 . + . mRNA SPAC1420.03 ; colour "2" ;
chromosome1 GeneDB CDS 1266400 1267647 . + . mRNA SPAC1420.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 1266353 1266358 . + . misc_feature unknown_1065 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1266383 1266399 . + . misc_feature unknown_1066 ; colour "6" ; note "ctaacttgtaattgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1267648 1267771 . + . mRNA SPAC1420.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1420.03" ; systematic_id "SPAC1420.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1267830 1267904 . - . mRNA SPAC1420.04c ; Alias "cox1101" ; ID "SPAC1420.04c" ; db_xref "SPD:51/51A06" ; systematic_id "SPAC1420.04c" ; primary_name "cox1101" ; gene "cox1101 ||| SPAC1420.04c ||| SPAPB17E12.01c ||| cox11" ; note "mRNA from AU007158" ;
chromosome1 GeneDB CDS_parts 1267905 1270166 . - . mRNA SPAC1420.04c ; systematic_id "SPAC1420.04c" ; colour "7" ; gene "cox1101 ||| SPAC1420.04c ||| SPAPB17E12.01c ||| cox11" ; note "pre-rsm22-cox11" ; Alias "cox1101" ; db_xref "SPD:51/51A06" ; synonym "cox11 ||| SPAPB17E12.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, proteolytic cleavage; db_xref=PMID:16835444; residue=549; cv=pt_mod; date=20060825 ||| term=genome organization, tandem fusion protein; db_xref=PMID:16835444; date=20060825 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; db_xref=PMID:16835444; cv=genome_org; date=20060825 ||| term=target of TIM23 translocase; db_xref=PMID:16835444; date=20060825 ||| term=orthologous to S. cerevisiae YPL132W (C-term); date=19700101 ||| term=orthologous to S. cerevisiae YKL155C (N-term); date=19700101" ; GO "GO:0031304; intrinsic to mitochondrial inner membrane
GO:0005759; mitochondrial matrix
GO:0005763; mitochondrial small ribosomal subunit
GO:0005507; copper ion binding
GO:0008168; methyltransferase activity
GO:0008535; cytochrome c oxidase complex assembly
GO:0032543; mitochondrial translation" ; primary_name "cox1101" ; product "fusion cytochrome c oxidase assembly protein Cox1101, mitochondrial ribosomal protein Rsm22 (predicted)" ;
chromosome1 GeneDB CDS 1267905 1270166 . - . mRNA SPAC1420.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 1269884 1269993 . + . misc_feature unknown_1067 ; note "nominal overlap with pB17E12 and cosmid SPAC1420" ;
chromosome1 GeneDB 5'-UTR 1270165 1270260 . - . mRNA SPAC1420.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1420.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1270750 1271636 . + . mRNA SPAPB17E12.02 ; systematic_id "SPAPB17E12.02" ; colour "2" ; gene "yip12 ||| yip1 ||| yip1-b ||| SPAPB17E12.02" ; Alias "yip12" ; synonym "yip1 ||| yip1-b" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0000387; spliceosomal snRNP biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SMN family; date=19700101 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, neurological disorders; date=20091123" ; primary_name "yip12" ; product "SMN family protein Yip12" ;
chromosome1 GeneDB CDS 1270750 1270916 . + . mRNA SPAPB17E12.02 ; colour "2" ;
chromosome1 GeneDB CDS 1271022 1271370 . + . mRNA SPAPB17E12.02 ; colour "2" ;
chromosome1 GeneDB CDS 1271445 1271636 . + . mRNA SPAPB17E12.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 1270917 1270922 . + . misc_feature unknown_1068 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB intron 1270917 1271021 . + . intron SPAPB17E12.02 ; Alias "yip12" ; systematic_id "SPAPB17E12.02" ; primary_name "yip12" ; gene "yip12 ||| yip1 ||| yip1-b ||| SPAPB17E12.02" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1271009 1271021 . + . misc_feature unknown_1069 ; colour "6" ; note "ctgacaagttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1271371 1271376 . + . misc_feature unknown_1070 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome1 GeneDB intron 1271371 1271444 . + . intron SPAPB17E12.02 ; Alias "yip12" ; systematic_id "SPAPB17E12.02" ; primary_name "yip12" ; gene "yip12 ||| yip1 ||| yip1-b ||| SPAPB17E12.02" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 1271430 1271444 . + . misc_feature unknown_1071 ; colour "6" ; note "ctaacatttttctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1271637 1271720 . + . mRNA SPAPB17E12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB17E12.02" ; systematic_id "SPAPB17E12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1271889 1272962 . + . mRNA SPAPB17E12.03 ; systematic_id "SPAPB17E12.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YMR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005778; peroxisomal membrane
GO:0007031; peroxisome organization and biogenesis
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAPB17E12.03" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB CDS 1271889 1271972 . + . mRNA SPAPB17E12.03 ; colour "7" ;
chromosome1 GeneDB CDS 1272015 1272962 . + . mRNA SPAPB17E12.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 1271973 1271978 . + . misc_feature unknown_1072 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1272001 1272014 . + . misc_feature unknown_1073 ; colour "6" ; note "ttaatctctttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1272387 1272392 . + . misc_feature unknown_1074 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1272466 1272482 . + . misc_feature unknown_1075 ; colour "6" ; note "ctaatacctacttacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1272711 1273024 . - . mRNA SPAPB17E12.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB17E12.04c" ; systematic_id "SPAPB17E12.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1273025 1274512 . - . mRNA SPAPB17E12.04c ; Alias "csn2" ; systematic_id "SPAPB17E12.04c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006974; response to DNA damage stimulus
GO:0010388; cullin deneddylation
GO:0008180; signalosome" ; gene "csn2 ||| SPAPB17E12.04c" ; primary_name "csn2" ; product "COP9/signalosome complex subunit Csn2" ;
chromosome1 GeneDB CDS 1273025 1274077 . - . mRNA SPAPB17E12.04c ; colour "2" ;
chromosome1 GeneDB CDS 1274131 1274191 . - . mRNA SPAPB17E12.04c ; colour "2" ;
chromosome1 GeneDB CDS 1274231 1274312 . - . mRNA SPAPB17E12.04c ; colour "2" ;
chromosome1 GeneDB CDS 1274353 1274447 . - . mRNA SPAPB17E12.04c ; colour "2" ;
chromosome1 GeneDB CDS 1274490 1274512 . - . mRNA SPAPB17E12.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 1274078 1274096 . - . misc_feature unknown_1076 ; colour "6" ; note "ctaattattgggttttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1274125 1274130 . - . misc_feature unknown_1077 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1274192 1274204 . - . misc_feature unknown_1078 ; colour "6" ; note "ctaactcttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1274225 1274230 . - . misc_feature unknown_1079 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1274313 1274327 . - . misc_feature unknown_1080 ; colour "6" ; note "ctaatcgattttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1274347 1274352 . - . misc_feature unknown_1081 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1274448 1274461 . - . misc_feature unknown_1082 ; colour "6" ; note "ttaataataaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1274484 1274489 . - . misc_feature unknown_1083 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1274511 1274527 . - . mRNA SPAPB17E12.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB17E12.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1275515 1275534 . + . mRNA SPAPB17E12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB17E12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1275535 1275871 . + . mRNA SPAPB17E12.05 ; systematic_id "SPAPB17E12.05" ; colour "7" ; gene "rpl3703 ||| rpl37 ||| SPAPB17E12.05" ; Alias "rpl3703" ; synonym "rpl37" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0019843; rRNA binding
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR185W and YDR500C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl3703" ; product "60S ribosomal protein L37 (predicted)" ;
chromosome1 GeneDB CDS 1275535 1275769 . + . mRNA SPAPB17E12.05 ; colour "7" ;
chromosome1 GeneDB CDS 1275837 1275871 . + . mRNA SPAPB17E12.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 1275770 1275775 . + . misc_feature unknown_1084 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1275770 1275836 . + . intron SPAPB17E12.05 ; Alias "rpl3703" ; systematic_id "SPAPB17E12.05" ; primary_name "rpl3703" ; gene "rpl3703 ||| rpl37 ||| SPAPB17E12.05" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1275821 1275836 . + . misc_feature unknown_1085 ; colour "6" ; note "ttaacattttatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1275872 1275900 . + . mRNA SPAPB17E12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB17E12.05" ; systematic_id "SPAPB17E12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1276507 1276672 . + . mRNA SPAPB17E12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB17E12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1276673 1277751 . + . mRNA SPAPB17E12.06 ; systematic_id "SPAPB17E12.06" ; controlled_curation "term=orthologous to S. cerevisiae YPL255W; date=20100919 ||| term=species distribution, conserved in Fungi; date=20100919 ||| term=species distribution, conserved in Fungi only; date=20100919 ||| term=species distribution, conserved in Eukaryotes; date=20100919" ; GO "GO:0030474; splindle pole body duplication
GO:0007020; microtuble nucleation" ; colour "7" ; gene "SPAPB17E12.06" ; product "Bfr1 binding protein ortholog (predicted), frameshifted" ;
chromosome1 GeneDB CDS 1276673 1276850 . + . mRNA SPAPB17E12.06 ; colour "7" ;
chromosome1 GeneDB CDS 1276937 1277021 . + . mRNA SPAPB17E12.06 ; colour "7" ;
chromosome1 GeneDB CDS 1277023 1277108 . + . mRNA SPAPB17E12.06 ; colour "7" ;
chromosome1 GeneDB CDS 1277169 1277270 . + . mRNA SPAPB17E12.06 ; colour "7" ;
chromosome1 GeneDB CDS 1277313 1277419 . + . mRNA SPAPB17E12.06 ; colour "7" ;
chromosome1 GeneDB CDS 1277458 1277751 . + . mRNA SPAPB17E12.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 1276851 1276856 . + . misc_feature unknown_1086 ; colour "6" ; note "gtgaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1276921 1276936 . + . misc_feature unknown_1087 ; colour "6" ; note "ctaattactcgattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1277109 1277114 . + . misc_feature unknown_1088 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1277153 1277168 . + . misc_feature unknown_1089 ; colour "6" ; note "ctaatgagacttaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1277271 1277276 . + . misc_feature unknown_1090 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1277299 1277312 . + . misc_feature unknown_1091 ; colour "6" ; note "ttgacatctttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1277420 1277425 . + . misc_feature unknown_1092 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 1277443 1277784 . - . mRNA SPAPB17E12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB17E12.07c" ; systematic_id "SPAPB17E12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 1277446 1277457 . + . misc_feature unknown_1093 ; colour "6" ; note "ctaaacttctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1277752 1278100 . + . mRNA SPAPB17E12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB17E12.06" ; systematic_id "SPAPB17E12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1277785 1278974 . - . mRNA SPAPB17E12.07c ; Alias "sen2" ; systematic_id "SPAPB17E12.07c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005741; mitochondrial outer membrane
GO:0000214; tRNA-intron endonuclease complex
GO:0000213; tRNA-intron endonuclease activity
GO:0000379; tRNA-type intron splice site recognition and cleavage" ; gene "SPAPB17E12.07c ||| sen2" ; primary_name "sen2" ; product "tRNA-splicing endonuclease subunit catalytic subunit Sen2 (predicted)" ;
chromosome1 GeneDB CDS 1277785 1278092 . - . mRNA SPAPB17E12.07c ; colour "7" ;
chromosome1 GeneDB CDS 1278140 1278974 . - . mRNA SPAPB17E12.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 1278093 1278106 . - . misc_feature unknown_1094 ; colour "6" ; note "ttaacaagaaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1278093 1278139 . - . intron SPAPB17E12.07c ; systematic_id "SPAPB17E12.07c" ; gene "SPAPB17E12.07c ||| sen2" ;
chromosome1 GeneDB misc_feature 1278134 1278139 . - . misc_feature unknown_1095 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1278973 1279092 . - . mRNA SPAPB17E12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB17E12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1279573 1280325 . + . mRNA SPAPB17E12.08 ; systematic_id "SPAPB17E12.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL080C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; cv=warning; date=20061212" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006487; protein amino acid N-linked glycosylation" ; product "N-glycosylation protein (predicted)" ;
chromosome1 GeneDB CDS 1279573 1279779 . + . mRNA SPAPB17E12.08 ; colour "7" ;
chromosome1 GeneDB CDS 1279820 1279869 . + . mRNA SPAPB17E12.08 ; colour "7" ;
chromosome1 GeneDB CDS 1279953 1280325 . + . mRNA SPAPB17E12.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 1279870 1279875 . + . misc_feature unknown_1096 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1279934 1279952 . + . misc_feature unknown_1097 ; colour "6" ; note "ctaactatatttgtactag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 1280537 1280700 . + . mRNA SPAPB17E12.09 ; ID "SPAPB17E12.09" ; systematic_id "SPAPB17E12.09" ; gene "SPAPB17E12.09" ; note "mRNA from AU008730" ;
chromosome1 GeneDB CDS_parts 1280701 1281358 . + . mRNA SPAPB17E12.09 ; systematic_id "SPAPB17E12.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060106 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis
GO:0005737; cytoplasm" ; gene "SPAPB17E12.09" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1280701 1281060 . + . mRNA SPAPB17E12.09 ; colour "8" ;
chromosome1 GeneDB CDS 1281107 1281358 . + . mRNA SPAPB17E12.09 ; colour "8" ;
chromosome1 GeneDB misc_feature 1281061 1281066 . + . misc_feature unknown_1098 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1281090 1281106 . + . misc_feature unknown_1099 ; colour "6" ; note "ctgactgctctcattag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 1281414 1282535 . - . mRNA SPAPB17E12.10c ; systematic_id "SPAPB17E12.10c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005739; mitochondrion
GO:0008168; methyltransferase activity
GO:0008650; rRNA (uridine-2'-O-)-methyltransferase activity
GO:0031167; rRNA methylation" ; colour "7" ; gene "SPAPB17E12.10c" ; product "mitochondrial 2' O-ribose methyltransferase Mrm2- like (predicted)" ;
chromosome1 GeneDB CDS 1281414 1282073 . - . mRNA SPAPB17E12.10c ; colour "7" ;
chromosome1 GeneDB CDS 1282117 1282167 . - . mRNA SPAPB17E12.10c ; colour "7" ;
chromosome1 GeneDB CDS 1282341 1282535 . - . mRNA SPAPB17E12.10c ; colour "7" ;
chromosome1 GeneDB misc_feature 1282074 1282086 . - . misc_feature unknown_1100 ; colour "6" ; note "ctaatcaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1282111 1282116 . - . misc_feature unknown_1101 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1282168 1282179 . - . misc_feature unknown_1102 ; colour "6" ; note "ctaactattaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1282335 1282340 . - . misc_feature unknown_1103 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1282534 1282776 . - . mRNA SPAPB17E12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB17E12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1283105 1283129 . + . mRNA SPAPB17E12.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB17E12.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1283130 1284330 . + . mRNA SPAPB17E12.11 ; systematic_id "SPAPB17E12.11" ; colour "7" ; gene "ost3 ||| SPAPB17E12.11" ; Alias "ost3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR085W and YML019W; date=19700101 ||| term=human TUSC3 ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=thioredoxin family; date=20081111" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation
GO:0004579; dolichyl-diphosphooligosaccharide- protein glycotransferase activity" ; primary_name "ost3" ; product "oligosaccharyltransferase gamma subunit Ost3 (predicted)" ; EC_number "2.4.1.119" ;
chromosome1 GeneDB CDS 1283130 1283335 . + . mRNA SPAPB17E12.11 ; colour "7" ;
chromosome1 GeneDB CDS 1283387 1283504 . + . mRNA SPAPB17E12.11 ; colour "7" ;
chromosome1 GeneDB CDS 1283563 1283642 . + . mRNA SPAPB17E12.11 ; colour "7" ;
chromosome1 GeneDB CDS 1283759 1284105 . + . mRNA SPAPB17E12.11 ; colour "7" ;
chromosome1 GeneDB CDS 1284152 1284330 . + . mRNA SPAPB17E12.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 1283336 1283341 . + . misc_feature unknown_1104 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1283374 1283386 . + . misc_feature unknown_1105 ; colour "6" ; note "ctaacgttgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1283505 1283510 . + . misc_feature unknown_1106 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1283547 1283562 . + . misc_feature unknown_1107 ; colour "6" ; note "ctaattgtactcatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1283643 1283648 . + . misc_feature unknown_1108 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1283746 1283758 . + . misc_feature unknown_1109 ; colour "6" ; note "ctaacttacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1284106 1284111 . + . misc_feature unknown_1110 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1284139 1284151 . + . misc_feature unknown_1111 ; colour "6" ; note "ctaacatttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1284331 1284428 . + . mRNA SPAPB17E12.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB17E12.11" ; systematic_id "SPAPB17E12.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1284531 1285484 . - . mRNA SPAPB17E12.12c ; systematic_id "SPAPB17E12.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YPR011C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20091106 ||| term=human SLC25A42 ortholog; date=20091106" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0015228; coenzyme A transmembrane transporter activity
GO:0071077; adenosine 3',5'-bisphosphate transmembrane transporter activity
GO:0071106; adenosine 3',5'-bisphosphate transmembrane transport
GO:0035349; coenzyme A transmembrane transport" ; gene "SPAPB17E12.12c" ; product "mitochondrial coenzyme A/ diphosphate transporter (predicted)" ;
chromosome1 GeneDB CDS 1284531 1285484 . - . mRNA SPAPB17E12.12c ; colour "7" ;
chromosome1 GeneDB CDS_parts 1285627 1286261 . + . mRNA SPAPB17E12.13 ; systematic_id "SPAPB17E12.13" ; colour "7" ; gene "rpl1802 ||| rpl18-2 ||| SPAPB17E12.13" ; Alias "rpl1802" ; synonym "rpl18-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL120C and YNL301C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl1802" ; product "60S ribosomal protein L18 (predicted)" ;
chromosome1 GeneDB CDS 1285627 1285629 . + . mRNA SPAPB17E12.13 ; colour "7" ;
chromosome1 GeneDB CDS 1285701 1286261 . + . mRNA SPAPB17E12.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 1285630 1285635 . + . misc_feature unknown_1112 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1285685 1285700 . + . misc_feature unknown_1113 ; colour "6" ; note "ctaataaatttattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1286262 1286298 . + . mRNA SPAPB17E12.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB17E12.13" ; systematic_id "SPAPB17E12.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1286916 1288922 . - . mRNA SPAPB17E12.14c ; systematic_id "SPAPB17E12.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; GO "GO:0003873; 6-phosphofructo-2-kinase activity
GO:0006003; fructose 2,6-bisphosphate metabolic process
GO:0006110; regulation of glycolysis
GO:0005737; cytoplasm" ; colour "7" ; gene "SPAPB17E12.14c" ; product "6-phosphofructo-2-kinase (predicted)" ;
chromosome1 GeneDB CDS 1286916 1288922 . - . mRNA SPAPB17E12.14c ; colour "7" ;
chromosome1 GeneDB misc_feature 1288856 1288965 . + . misc_feature unknown_1114 ; note "nominal overlap with SPAC1565 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 1288923 1289210 . - . mRNA SPAPB17E12.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB17E12.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact ||| refined to match gene structure in PMID:21270388" ;
chromosome1 GeneDB 5'-UTR 1290971 1291277 . + . mRNA SPAC1565.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1565.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1291278 1292006 . + . mRNA SPAC1565.01 ; db_xref "SPD:08/08F08" ; systematic_id "SPAC1565.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNR018W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC1565.01" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 1291278 1292006 . + . mRNA SPAC1565.01 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1292007 1293449 . + . mRNA SPAC1565.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1565.01" ; systematic_id "SPAC1565.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1292457 1292616 . - . mRNA SPAC1565.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1565.02c" ; systematic_id "SPAC1565.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1292617 1293803 . - . mRNA SPAC1565.02c ; db_xref "SPD:18/18H05" ; systematic_id "SPAC1565.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005100; Rho GTPase activator activity
GO:0032319; regulation of Rho GTPase activity" ; colour "7" ; gene "SPAC1565.02c" ; product "Rho-type GTPase activating protein (predicted)" ;
chromosome1 GeneDB CDS 1292617 1293689 . - . mRNA SPAC1565.02c ; colour "7" ;
chromosome1 GeneDB CDS 1293752 1293803 . - . mRNA SPAC1565.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 1293690 1293711 . - . misc_feature unknown_1115 ; colour "6" ; note "ctaatcaaatttataaatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1293746 1293751 . - . misc_feature unknown_1116 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1293802 1293887 . - . mRNA SPAC1565.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1565.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1294381 1294482 . + . mRNA SPAC1565.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1565.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1294483 1294983 . + . mRNA SPAC1565.03 ; db_xref "SPD:04/04H02" ; systematic_id "SPAC1565.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1565.03" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1294483 1294983 . + . mRNA SPAC1565.03 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 1294984 1295317 . + . mRNA SPAC1565.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1565.03" ; systematic_id "SPAC1565.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1295537 1295557 . - . mRNA SPAC1565.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1565.04c" ; systematic_id "SPAC1565.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1295558 1296510 . - . mRNA SPAC1565.04c ; systematic_id "SPAC1565.04c" ; colour "2" ; gene "ste4 ||| SPAC1565.04c" ; Alias "ste4" ; db_xref "SPD:13/13D07" ; GO "GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0019887; protein kinase regulator activity
GO:0006995; cellular response to nitrogen starvation
GO:0000750; pheromone-dependent signal transduction during conjugation with cellular fusion
GO:0019236; response to pheromone
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is Byr2; date=19700101 ||| term=orthologous to S. cerevisiae YCL032W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=phenotype, sterile; db_xref=PMID:3185514; date=20101013 ||| term=name description, STErile; db_xref=PMID:3185514; date=20101013" ; primary_name "ste4" ; product "adaptor protein Ste4" ;
chromosome1 GeneDB CDS 1295558 1296255 . - . mRNA SPAC1565.04c ; colour "2" ;
chromosome1 GeneDB CDS 1296414 1296510 . - . mRNA SPAC1565.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 1296408 1296413 . - . misc_feature unknown_1117 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1296509 1296580 . - . mRNA SPAC1565.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1565.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1297186 1297389 . + . mRNA SPAC1565.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1565.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1297390 1299711 . + . mRNA SPAC1565.05 ; db_xref "SPD:28/28C09" ; systematic_id "SPAC1565.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1565.05" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1297390 1299711 . + . mRNA SPAC1565.05 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 1299825 1300143 . - . mRNA SPAC1565.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1565.06c" ; systematic_id "SPAC1565.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1300144 1301018 . - . mRNA SPAC1565.06c ; systematic_id "SPAC1565.06c" ; colour "2" ; gene "spg1 ||| sid3 ||| SPAC1565.06c" ; Alias "spg1" ; db_xref "SPD:11/11H01" ; synonym "sid3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9203579; date=19700101 ||| term=phenotype, septum initiation defective; cv=phenotype; db_xref=PMID:9649519; date=20091006 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9203579; date=20100705 ||| term=phenotype, multinucleate; qualifier=deletion; db_xref=PMID:9203579; date=20100705 ||| term=target of Byr4; qualifier=activated_by; db_xref=PMID:9742395; date=19700101 ||| term=target of Cdc16; qualifier=activated_by; db_xref=PMID:9742395; date=19700101 ||| term=orthologous to S. cerevisiae YML064C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=name description, Septum Initiation Defective; db_xref=PMID:9649519; cv=name_description; date=20091006" ; GO "GO:0005816; spindle pole body
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005515; protein binding
GO:0031028; septation initiation signaling
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization" ; primary_name "spg1" ; product "GTPase Spg1" ;
chromosome1 GeneDB CDS 1300144 1300242 . - . mRNA SPAC1565.06c ; colour "2" ;
chromosome1 GeneDB CDS 1300282 1300356 . - . mRNA SPAC1565.06c ; colour "2" ;
chromosome1 GeneDB CDS 1300397 1300480 . - . mRNA SPAC1565.06c ; colour "2" ;
chromosome1 GeneDB CDS 1300634 1300842 . - . mRNA SPAC1565.06c ; colour "2" ;
chromosome1 GeneDB CDS 1300889 1301018 . - . mRNA SPAC1565.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 1300243 1300256 . - . misc_feature unknown_1118 ; colour "6" ; note "ttgacgatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1300276 1300281 . - . misc_feature unknown_1119 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1300357 1300369 . - . misc_feature unknown_1120 ; colour "6" ; note "ttaacttggttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1300391 1300396 . - . misc_feature unknown_1121 ; colour "6" ; note "gtacaa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1300481 1300493 . - . misc_feature unknown_1122 ; colour "6" ; note "ctaacgctttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1300628 1300633 . - . misc_feature unknown_1123 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1300843 1300855 . - . misc_feature unknown_1124 ; colour "6" ; note "ttaacaaacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1300883 1300888 . - . misc_feature unknown_1125 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1301017 1301091 . - . mRNA SPAC1565.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1565.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1301696 1301916 . - . mRNA SPAC1565.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1565.07c" ; systematic_id "SPAC1565.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1301917 1305617 . - . mRNA SPAC1565.07c ; db_xref "SPD:48/48E07" ; systematic_id "SPAC1565.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CAND1 ortholog; date=20100919" ; GO "GO:0000151; ubiquitin ligase complex
GO:0017025; TATA-binding protein binding
GO:0051444; negative regulation of ubiquitin- protein ligase activity
GO:0016567; protein ubiquitination
GO:0006355; regulation of transcription, DNA- dependent
GO:0006352; transcription initiation" ; gene "SPAC1565.07c ||| knd1" ; product "TATA-binding protein (predicted)" ; reserved_name "knd1" ;
chromosome1 GeneDB CDS 1301917 1305542 . - . mRNA SPAC1565.07c ; colour "7" ;
chromosome1 GeneDB CDS 1305581 1305617 . - . mRNA SPAC1565.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 1305543 1305555 . - . misc_feature unknown_1126 ; colour "6" ; note "ctaactgttgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1305575 1305580 . - . misc_feature unknown_1127 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1305616 1305712 . - . mRNA SPAC1565.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1565.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 1305861 1306249 . + . misc_RNA SPNCRNA.169 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.169" ; synonym "SPNG224" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 1306439 1308942 . + . mRNA SPAC1565.08 ; systematic_id "SPAC1565.08" ; colour "2" ; gene "cdc48 ||| SPAC1565.08 ||| SPAC6F12.01" ; Alias "cdc48" ; db_xref "SPD:29/29A12" ; synonym "SPAC6F12.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDL126C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005789; endoplasmic reticulum membrane
GO:0000790; nuclear chromatin
GO:0016887; ATPase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030433; ER-associated protein catabolism
GO:0033047; regulation of mitotic sister chromatid segregation
GO:0033047; regulation of mitotic sister chromatid segregation
GO:0007346; mitotic cell cycle
GO:0033554; cellular response to stress
GO:0030970; retrograde protein transport, ER to cytosol
GO:0051230; spindle disassembly
GO:0006511; ubiquitin-dependent protein catabolism
GO:0006906; vesicle fusion
GO:0034098; Cdc48-Npl4-Ufd1 AAA ATPase complex
GO:0061166; establishment of endoplasmic reticulum localization involved in endoplasmic reticulum polarization
GO:0005515; protein binding" ; primary_name "cdc48" ; product "AAA family ATPase Cdc48" ;
chromosome1 GeneDB CDS 1306439 1306512 . + . mRNA SPAC1565.08 ; colour "2" ;
chromosome1 GeneDB CDS 1306569 1308942 . + . mRNA SPAC1565.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 1306513 1306518 . + . misc_feature unknown_1128 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1306556 1306568 . + . misc_feature unknown_1129 ; colour "6" ; note "ctaacaagctcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1307653 1307748 . + . misc_feature unknown_1130 ; note "nominal overlap with SPAC6F12 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 1308943 1309121 . + . mRNA SPAC1565.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1565.08" ; systematic_id "SPAC1565.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1309726 1310979 . + . mRNA SPAC6F12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1310980 1312683 . + . mRNA SPAC6F12.02 ; systematic_id "SPAC6F12.02" ; colour "2" ; gene "rst2 ||| SPAC6F12.02" ; Alias "rst2" ; db_xref "SPD:35/35D09" ; GO "GO:0031670; cellular response to nutrient
GO:0006111; regulation of gluconeogenesis
GO:0005634; nucleus
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0005515; protein binding
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0051039; positive regulation of transcription, meiotic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=gene expression, transcriptionally regulates ste11; qualifier=activates; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulates fbp1; qualifier=activates; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulates rsv1; qualifier=activates; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDR216W and YML081W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; evidence=IDA; qualifier=in_vitro; db_xref=PMID:11739717; date=20100826 ||| term=target of Pka1; qualifier=phosphorylated_by|in_vitro; db_xref=PMID:11739717; date=20100826 ||| term=DNA binding specificity, binds STREP motif; db_xref=PMID:11739717; date=20100826" ; primary_name "rst2" ; product "transcription factor Rst2" ;
chromosome1 GeneDB CDS 1310980 1312683 . + . mRNA SPAC6F12.02 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1312684 1313429 . + . mRNA SPAC6F12.02 ; Alias "rst2" ; ID "SPAC6F12.02" ; db_xref "SPD:35/35D09" ; systematic_id "SPAC6F12.02" ; primary_name "rst2" ; gene "rst2 ||| SPAC6F12.02" ; note "mRNA from spc10863 422 229" ;
chromosome1 GeneDB 3'-UTR 1313236 1313720 . - . mRNA SPAC6F12.03c ; Alias "fsv1" ; ID "SPAC6F12.03c" ; db_xref "SPD:09/09A05" ; systematic_id "SPAC6F12.03c" ; primary_name "fsv1" ; gene "fsv1 ||| SPAC6F12.03c" ; note "mRNA from spc10863 422 229" ;
chromosome1 GeneDB CDS_parts 1313721 1314464 . - . mRNA SPAC6F12.03c ; systematic_id "SPAC6F12.03c" ; colour "2" ; gene "fsv1 ||| SPAC6F12.03c" ; note "fission yeast syntaxin homolog required for vacuolar sorting and fusion" ; Alias "fsv1" ; db_xref "SPD:09/09A05" ; GO "GO:0000138; Golgi trans cisterna
GO:0005484; SNAP receptor activity
GO:0006896; Golgi to vacuole transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; db_xref=PMID:14575697; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; db_xref=PMID:14575697; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fsv1" ; product "SNARE Fsv1" ;
chromosome1 GeneDB CDS 1313721 1314464 . - . mRNA SPAC6F12.03c ; colour "2" ;
chromosome1 GeneDB tRNA 1314924 1315020 . - . tRNA SPATRNAPRO.02 ; systematic_id "SPATRNAPRO.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033448; AGG codon-amino acid adaptor activity" ; product "tRNA Proline" ; note "anticodon CGG, Cove score 57.28" ;
chromosome1 GeneDB intron 1314960 1314983 . - . intron SPATRNAPRO.02 ; systematic_id "SPATRNAPRO.02" ; note "intron tRNA Pro anticodon CGG" ;
chromosome1 GeneDB 5'-UTR 1316053 1316098 . + . mRNA SPAC6F12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1316099 1316497 . + . mRNA SPAC6F12.04 ; db_xref "SPD:03/03A06" ; systematic_id "SPAC6F12.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR100W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "; COPI-coated vesicle
GO:0016192; vesicle-mediated transport" ; gene "SPAC6F12.04" ; product "COPI-coated vesicle associated protein (predicted)" ;
chromosome1 GeneDB CDS 1316099 1316497 . + . mRNA SPAC6F12.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1316498 1316643 . + . mRNA SPAC6F12.04 ; ID "SPAC6F12.04" ; db_xref "SPD:03/03A06" ; systematic_id "SPAC6F12.04" ; gene "SPAC6F12.04" ; note "mRNA from spc08792 340 482" ;
chromosome1 GeneDB snoRNA 1316808 1316891 . + . snoRNA SPSNORNA.53 ; Alias "snR88" ; db_xref "EMBL:EF165542" ; systematic_id "SPSNORNA.53" ; gene "SPSNORNA.53" ; primary_name "snR88" ; product "small nucleolar RNA snR88" ;
chromosome1 GeneDB 3'-UTR 1316933 1317092 . - . mRNA SPAC6F12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F12.05c" ; systematic_id "SPAC6F12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1317093 1318802 . - . mRNA SPAC6F12.05c ; systematic_id "SPAC6F12.05c" ; colour "2" ; gene "tnr3 ||| SPAC6F12.05c" ; Alias "tnr3" ; db_xref "SPD:35/35E08" ; GO "GO:0004788; thiamin diphosphokinase activity
GO:0004788; thiamin diphosphokinase activity
GO:0009229; thiamin diphosphate biosynthesis
GO:0070624; negative regulation of thiamin biosynthesis
GO:0005737; cytoplasm
GO:0016787; hydrolase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR142W (N-term); date=19700101 ||| term=orthologous to S. cerevisiae YOR143C (C-term); date=19700101 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20071106" ; primary_name "tnr3" ; product "thiamine diphosphokinase Tnr3" ; EC_number "2.7.6.2" ;
chromosome1 GeneDB CDS 1317093 1318802 . - . mRNA SPAC6F12.05c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1318801 1319020 . - . mRNA SPAC6F12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1319736 1319845 . + . mRNA SPAC6F12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1319846 1320463 . + . mRNA SPAC6F12.06 ; db_xref "SPD:06/06H12" ; systematic_id "SPAC6F12.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL135C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005094; Rho GDP-dissociation inhibitor activity
GO:0007264; small GTPase mediated signal transduction
GO:0007015; actin filament organization
GO:0005829; cytosol" ; gene "SPAC6F12.06" ; product "Rho GDP dissociation inhibitor Rdi1 (predicted)" ;
chromosome1 GeneDB CDS 1319846 1320463 . + . mRNA SPAC6F12.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1320464 1320947 . + . mRNA SPAC6F12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F12.06" ; systematic_id "SPAC6F12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1321277 1321434 . + . mRNA SPAC6F12.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1321435 1322301 . + . mRNA SPAC6F12.07 ; systematic_id "SPAC6F12.07" ; colour "7" ; gene "tom20 ||| SPAC6F12.07" ; Alias "tom20" ; db_xref "SPD:11/11F06" ; GO "GO:0015450; protein translocase activity
GO:0030150; protein import into mitochondrial matrix
GO:0005742; mitochondrial outer membrane translocase complex
GO:0005047; signal recognition particle binding
GO:0070096; mitochondrial outer membrane translocase complex assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR082W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tom20" ; product "mitochondrial TOM complex subunit Tom20 (predicted)" ;
chromosome1 GeneDB CDS 1321435 1321483 . + . mRNA SPAC6F12.07 ; colour "7" ;
chromosome1 GeneDB CDS 1321782 1321841 . + . mRNA SPAC6F12.07 ; colour "7" ;
chromosome1 GeneDB CDS 1321903 1322088 . + . mRNA SPAC6F12.07 ; colour "7" ;
chromosome1 GeneDB CDS 1322138 1322301 . + . mRNA SPAC6F12.07 ; colour "7" ;
chromosome1 GeneDB misc_feature 1321484 1321489 . + . misc_feature unknown_1131 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1321765 1321781 . + . misc_feature unknown_1132 ; colour "6" ; note "ctaatttattaaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1321842 1321847 . + . misc_feature unknown_1133 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1321842 1321902 . + . intron SPAC6F12.07 ; Alias "tom20" ; db_xref "SPD:11/11F06" ; systematic_id "SPAC6F12.07" ; primary_name "tom20" ; gene "tom20 ||| SPAC6F12.07" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1321887 1321902 . + . misc_feature unknown_1134 ; colour "6" ; note "cttacgtttactatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1322089 1322094 . + . misc_feature unknown_1135 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1322121 1322137 . + . misc_feature unknown_1136 ; colour "6" ; note "ttaacctctgtttatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1322266 1322438 . - . mRNA SPAC6F12.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F12.08c" ; systematic_id "SPAC6F12.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1322302 1322321 . + . mRNA SPAC6F12.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F12.07" ; systematic_id "SPAC6F12.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1322439 1324336 . - . mRNA SPAC6F12.08c ; db_xref "SPD:46/46A12" ; systematic_id "SPAC6F12.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR102C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human EXOC8 ortholog; date=20100923" ; colour "7" ; GO "GO:0000145; exocyst
GO:0006887; exocytosis" ; gene "SPAC6F12.08c" ; product "exocyst complex subunit Exo84 (predicted)" ;
chromosome1 GeneDB CDS 1322439 1323955 . - . mRNA SPAC6F12.08c ; colour "7" ;
chromosome1 GeneDB CDS 1323999 1324140 . - . mRNA SPAC6F12.08c ; colour "7" ;
chromosome1 GeneDB CDS 1324195 1324252 . - . mRNA SPAC6F12.08c ; colour "7" ;
chromosome1 GeneDB CDS 1324299 1324336 . - . mRNA SPAC6F12.08c ; colour "7" ;
chromosome1 GeneDB misc_feature 1323956 1323972 . - . misc_feature unknown_1137 ; colour "6" ; note "ctaattttgcaaaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1323993 1323998 . - . misc_feature unknown_1138 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1324141 1324163 . - . misc_feature unknown_1139 ; colour "6" ; note "ttactaaaactgctttttaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1324189 1324194 . - . misc_feature unknown_1140 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1324293 1324298 . - . misc_feature unknown_1141 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1324335 1324520 . - . mRNA SPAC6F12.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1324631 1325252 . + . mRNA SPAC6F12.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1325253 1328900 . + . mRNA SPAC6F12.09 ; systematic_id "SPAC6F12.09" ; colour "2" ; gene "rdp1 ||| rdr1 ||| SPAC6F12.09" ; Alias "rdp1" ; db_xref "SPD:39/39B11" ; synonym "rdr1" ; GO "GO:0005721; centric heterochromatin
GO:0031380; nuclear RNA-directed RNA polymerase complex
GO:0031934; mating-type region heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0005634; nucleus
GO:0003968; RNA-directed RNA polymerase activity
GO:0016458; gene silencing by RNA
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0031060; regulation of histone methylation
GO:0031048; small RNA-mediated chromatin silencing
GO:0045141; telomere clustering" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11073995; date=20100712 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824" ; primary_name "rdp1" ; product "RNA-directed RNA polymerase Rdp1" ; EC_number "2.7.7.48" ;
chromosome1 GeneDB CDS 1325253 1328900 . + . mRNA SPAC6F12.09 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1328901 1329061 . + . mRNA SPAC6F12.09 ; Alias "rdp1" ; ID "SPAC6F12.09" ; db_xref "SPD:39/39B11" ; systematic_id "SPAC6F12.09" ; primary_name "rdp1" ; gene "rdp1 ||| rdr1 ||| SPAC6F12.09" ; note "mRNA from spc07942 52 192" ;
chromosome1 GeneDB 3'-UTR 1329091 1329261 . - . mRNA SPAC6F12.10c ; Alias "ade3" ; ID "SPAC6F12.10c" ; db_xref "SPD:39/39D08" ; systematic_id "SPAC6F12.10c" ; primary_name "ade3" ; gene "ade3 ||| min11 ||| SPAC6F12.10c" ; note "mRNA from spc10688 446 199" ;
chromosome1 GeneDB CDS_parts 1329262 1333233 . - . mRNA SPAC6F12.10c ; systematic_id "SPAC6F12.10c" ; colour "7" ; gene "ade3 ||| min11 ||| SPAC6F12.10c" ; Alias "ade3" ; db_xref "SPD:39/39D08" ; synonym "min11" ; GO "GO:0005737; cytoplasm
GO:0006189; 'de novo' IMP biosynthesis
GO:0004642; phosphoribosylformylglycinamidine synthase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, inferred from genetic map position; cv=warning; date=20100326" ; primary_name "ade3" ; product "phosphoribosylformylglycinamidine synthase Ade3 (predicted)" ; EC_number "6.3.5.3" ;
chromosome1 GeneDB CDS 1329262 1333233 . - . mRNA SPAC6F12.10c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1333232 1333323 . - . mRNA SPAC6F12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1333485 1333664 . - . mRNA SPAC6F12.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F12.11c" ; systematic_id "SPAC6F12.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1333665 1335143 . - . mRNA SPAC6F12.11c ; systematic_id "SPAC6F12.11c" ; colour "2" ; gene "sfc1 ||| SPAC6F12.11c" ; Alias "sfc1" ; db_xref "SPD:23/23H02" ; GO "GO:0000127; transcription factor TFIIIC complex
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003709; RNA polymerase III transcription factor activity
GO:0043035; chromatin insulator sequence binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR123C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "sfc1" ; product "transcription factor TFIIIC complex A box associated subunit Sfc1" ;
chromosome1 GeneDB CDS 1333665 1334921 . - . mRNA SPAC6F12.11c ; colour "2" ;
chromosome1 GeneDB CDS 1335030 1335143 . - . mRNA SPAC6F12.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1335142 1335521 . - . mRNA SPAC6F12.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1335520 1335927 . + . mRNA SPAC6F12.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1335928 1338056 . + . mRNA SPAC6F12.12 ; systematic_id "SPAC6F12.12" ; colour "2" ; gene "par2 ||| pbp2 ||| SPAC6F12.12" ; Alias "par2" ; db_xref "SPD:46/46F01" ; synonym "pbp2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15195092; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YOR014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000159; protein phosphatase type 2A complex
GO:0031029; regulation of septation initiation signaling
GO:0033554; cellular response to stress
GO:0019888; protein phosphatase regulator activity" ; primary_name "par2" ; product "protein phosphatase regulatory subunit Par2" ;
chromosome1 GeneDB CDS 1335928 1336320 . + . mRNA SPAC6F12.12 ; colour "2" ;
chromosome1 GeneDB CDS 1336389 1336632 . + . mRNA SPAC6F12.12 ; colour "2" ;
chromosome1 GeneDB CDS 1336705 1336901 . + . mRNA SPAC6F12.12 ; colour "2" ;
chromosome1 GeneDB CDS 1336952 1337346 . + . mRNA SPAC6F12.12 ; colour "2" ;
chromosome1 GeneDB CDS 1337402 1338056 . + . mRNA SPAC6F12.12 ; colour "2" ;
chromosome1 GeneDB misc_feature 1336321 1336326 . + . misc_feature unknown_1142 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1336374 1336388 . + . misc_feature unknown_1143 ; colour "6" ; note "ctaacttacttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1336633 1336638 . + . misc_feature unknown_1144 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1336692 1336704 . + . misc_feature unknown_1145 ; colour "6" ; note "ctaatataattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1336902 1336907 . + . misc_feature unknown_1146 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1336931 1336951 . + . misc_feature unknown_1147 ; colour "6" ; note "taaaaatctaatcactatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1337347 1337352 . + . misc_feature unknown_1148 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 1337347 1337401 . + . intron SPAC6F12.12 ; Alias "par2" ; db_xref "SPD:46/46F01" ; systematic_id "SPAC6F12.12" ; primary_name "par2" ; gene "par2 ||| pbp2 ||| SPAC6F12.12" ; note "intron confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1337381 1337401 . + . misc_feature unknown_1149 ; colour "6" ; note "tttacaaactaacttattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1338365 1338451 . - . mRNA SPAC6F12.13c ; Alias "fps1" ; ID "SPAC6F12.13c" ; db_xref "SPD:44/44A12" ; systematic_id "SPAC6F12.13c" ; gene "fps1 ||| SPAC6F12.13c" ; primary_name "fps1" ; note "mRNA from spc10849 475 164" ;
chromosome1 GeneDB CDS_parts 1338452 1339700 . - . mRNA SPAC6F12.13c ; systematic_id "SPAC6F12.13c" ; colour "2" ; gene "fps1 ||| SPAC6F12.13c" ; note "Fps1 appears to have YJL167W has retained the functions YPL069C, Spo9 (Fps1 paralog) appears to have farnesyltransferase like S. cerevisiae BTS1 YPL069C which does not have a direct ortholog in fission yeast" ; Alias "fps1" ; db_xref "SPD:44/44A12" ; GO "GO:0004161; dimethylallyltranstransferase activity
GO:0004337; geranyltranstransferase activity
GO:0005515; protein binding
GO:0004660; protein farnesyltransferase activity
GO:0006696; ergosterol biosynthetic process
GO:0045337; farnesyl diphosphate biosynthetic process
GO:0008299; isoprenoid biosynthetic process
GO:0018342; protein prenylation
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL167W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17596513; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=complementation, functionally complements S. cerevisiae ERG20; db_xref=PMID:17596513; date=20101012" ; primary_name "fps1" ; product "geranyltranstransferase Fps1" ; EC_number "2.5.1.10" ;
chromosome1 GeneDB CDS 1338452 1339375 . - . mRNA SPAC6F12.13c ; colour "2" ;
chromosome1 GeneDB CDS 1339581 1339700 . - . mRNA SPAC6F12.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 1339376 1339394 . - . misc_feature unknown_1150 ; colour "6" ; note "ctaactgctgtttttgtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1339376 1339580 . - . intron SPAC6F12.13c ; Alias "fps1" ; db_xref "EMBL:D89104 ||| SPD:44/44A12" ; systematic_id "SPAC6F12.13c" ; gene "fps1 ||| SPAC6F12.13c" ; primary_name "fps1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1339575 1339580 . - . misc_feature unknown_1151 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1339699 1339921 . - . mRNA SPAC6F12.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1340252 1340399 . + . mRNA SPAC6F12.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1340400 1342427 . + . mRNA SPAC6F12.14 ; systematic_id "SPAC6F12.14" ; colour "2" ; gene "cut23 ||| apc8 ||| SPAC6F12.14" ; Alias "cut23" ; db_xref "SPD:27/27E10" ; synonym "apc8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=phenotype, sterile; allele=cut23-194; date=20100727 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; allele=cut23- PD26; db_xref=PMID:11777938; date=20100727 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005680; anaphase-promoting complex
GO:0005515; protein binding
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0016567; protein ubiquitination" ; primary_name "cut23" ; product "anaphase-promoting complex subunit Apc8" ;
chromosome1 GeneDB CDS 1340400 1340533 . + . mRNA SPAC6F12.14 ; colour "2" ;
chromosome1 GeneDB CDS 1340826 1341544 . + . mRNA SPAC6F12.14 ; colour "2" ;
chromosome1 GeneDB CDS 1341583 1342427 . + . mRNA SPAC6F12.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 1341545 1341550 . + . misc_feature unknown_1152 ; colour "6" ; note "gtatac, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1341571 1341582 . + . misc_feature unknown_1153 ; colour "6" ; note "ctaactttacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1342122 1342631 . - . mRNA SPAC6F12.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F12.15c" ; systematic_id "SPAC6F12.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1342632 1344756 . - . mRNA SPAC6F12.15c ; systematic_id "SPAC6F12.15c" ; colour "2" ; gene "cut9 ||| SPAC6F12.15c ||| dre1" ; Alias "cut9" ; db_xref "SPD:37/37D09" ; synonym "dre1" ; GO "GO:0005680; anaphase-promoting complex
GO:0005515; protein binding
GO: SF new; regulation of DNA-dependent DNA replication
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0008054; cyclin catabolism
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:15466421; date=20100727 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=name description, Defect in REreplication; db_xref=PMID:15466421; cv=name_description; date=20100126" ; primary_name "cut9" ; product "anaphase-promoting complex subunit Cut9" ;
chromosome1 GeneDB CDS 1342632 1342922 . - . mRNA SPAC6F12.15c ; colour "2" ;
chromosome1 GeneDB CDS 1342979 1343114 . - . mRNA SPAC6F12.15c ; colour "2" ;
chromosome1 GeneDB CDS 1343168 1344756 . - . mRNA SPAC6F12.15c ; colour "2" ;
chromosome1 GeneDB misc_feature 1342923 1342936 . - . misc_feature unknown_1154 ; colour "6" ; note "ttaacattgattag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1342923 1342978 . - . intron SPAC6F12.15c ; Alias "cut9" ; db_xref "SPD:37/37D09" ; systematic_id "SPAC6F12.15c" ; primary_name "cut9" ; gene "cut9 ||| SPAC6F12.15c ||| dre1" ; note "confirmed intron SPCUT9A D31844" ;
chromosome1 GeneDB misc_feature 1342973 1342978 . - . misc_feature unknown_1155 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1343115 1343128 . - . misc_feature unknown_1156 ; colour "6" ; note "ctaacatcatttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1343115 1343167 . - . intron SPAC6F12.15c ; Alias "cut9" ; db_xref "SPD:37/37D09" ; systematic_id "SPAC6F12.15c" ; primary_name "cut9" ; gene "cut9 ||| SPAC6F12.15c ||| dre1" ; note "confirmed intron SPCUT9A D31844" ;
chromosome1 GeneDB misc_feature 1343162 1343167 . - . misc_feature unknown_1157 ; colour "6" ; note "gtgagg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1344755 1344818 . - . mRNA SPAC6F12.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1345089 1348442 . - . mRNA SPAC6F12.16c ; systematic_id "SPAC6F12.16c" ; colour "2" ; gene "SPAC6F12.16c ||| mtr4" ; Alias "mtr4" ; db_xref "SPD:30/30D09" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0031499; TRAMP complex
GO:0016078; tRNA catabolism
GO:0043630; ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolism
GO:0071049; nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YJL050W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mtr4" ; product "ATP-dependent RNA helicase, TRAMP complex subunit Mtr4" ;
chromosome1 GeneDB CDS 1345089 1348442 . - . mRNA SPAC6F12.16c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1348441 1348500 . - . mRNA SPAC6F12.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F12.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1348780 1351024 . + . mRNA SPAC6F12.17 ; systematic_id "SPAC6F12.17" ; colour "7" ; gene "SPAC6F12.17 ||| rna14" ; Alias "rna14" ; db_xref "SPD:28/28A11" ; GO "GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation
GO:0005849; mRNA cleavage factor complex
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0005847; mRNA cleavage and polyadenylation specificity factor complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HAT repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rna14" ; product "mRNA cleavage and polyadenylation specificity factor complex subunit Rna14 (predicted)" ;
chromosome1 GeneDB CDS 1348780 1350871 . + . mRNA SPAC6F12.17 ; colour "7" ;
chromosome1 GeneDB CDS 1350915 1351024 . + . mRNA SPAC6F12.17 ; colour "7" ;
chromosome1 GeneDB misc_feature 1350872 1350877 . + . misc_feature unknown_1158 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1350900 1350914 . + . misc_feature unknown_1159 ; colour "6" ; note "ctaactatcttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1351025 1351142 . + . mRNA SPAC6F12.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F12.17" ; systematic_id "SPAC6F12.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1351638 1352356 . - . mRNA SPAC19E9.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19E9.01c" ; systematic_id "SPAC19E9.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 1352101 1352301 . + . misc_feature unknown_1160 ; note "nominal overlap with cosmid SPAC6F12 and cosmid SPAC19E9" ;
chromosome1 GeneDB CDS_parts 1352357 1353659 . - . mRNA SPAC19E9.01c ; systematic_id "SPAC19E9.01c" ; colour "2" ; gene "nup40 ||| SPAC19E9.01c" ; Alias "nup40" ; db_xref "SPD:22/22F07" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0007094; mitotic spindle checkpoint
GO:0005515; protein binding
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YMR153W and YDL088C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nup40" ; product "nucleoporin Nup40" ; reserved_name "nup40" ;
chromosome1 GeneDB CDS 1352357 1353236 . - . mRNA SPAC19E9.01c ; colour "2" ;
chromosome1 GeneDB CDS 1353424 1353659 . - . mRNA SPAC19E9.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 1353237 1353254 . - . misc_feature unknown_1161 ; colour "6" ; note "ctaattttctctaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1353418 1353423 . - . misc_feature unknown_1162 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1353658 1353729 . - . mRNA SPAC19E9.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19E9.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1354204 1354359 . + . mRNA SPAC19E9.02 ; Alias "fin1" ; ID "SPAC19E9.02" ; systematic_id "SPAC19E9.02" ; primary_name "fin1" ; gene "fin1 ||| SPAC19E9.02" ; note "mRNA from AU008380" ;
chromosome1 GeneDB CDS_parts 1354360 1356842 . + . mRNA SPAC19E9.02 ; systematic_id "SPAC19E9.02" ; colour "2" ; gene "fin1 ||| SPAC19E9.02" ; Alias "fin1" ; db_xref "SPD:28/28H11" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0007076; mitotic chromosome condensation
GO:0031030; negative regulation of septation initiation signaling
GO:0006468; protein amino acid phosphorylation
GO:0034613; cellular protein localization
GO:0007346; regulation of progression through mitotic cell cycle
GO:0031028; septation initiation signaling
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YAR018C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9490640; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "fin1" ; product "serine/threonine protein kinase, NIMA related Fin1" ;
chromosome1 GeneDB CDS 1354360 1354419 . + . mRNA SPAC19E9.02 ; colour "2" ;
chromosome1 GeneDB CDS 1354688 1354711 . + . mRNA SPAC19E9.02 ; colour "2" ;
chromosome1 GeneDB CDS 1354758 1356842 . + . mRNA SPAC19E9.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 1354420 1354425 . + . misc_feature unknown_1163 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1354420 1354687 . + . intron SPAC19E9.02 ; Alias "fin1" ; db_xref "SPD:28/28H11" ; systematic_id "SPAC19E9.02" ; primary_name "fin1" ; gene "fin1 ||| SPAC19E9.02" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1354675 1354687 . + . misc_feature unknown_1164 ; colour "6" ; note "ctaactattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1354712 1354717 . + . misc_feature unknown_1165 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1354712 1354757 . + . intron SPAC19E9.02 ; Alias "fin1" ; db_xref "SPD:28/28H11" ; systematic_id "SPAC19E9.02" ; primary_name "fin1" ; gene "fin1 ||| SPAC19E9.02" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1354744 1354757 . + . misc_feature unknown_1166 ; colour "6" ; note "ttaatactttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1356843 1357138 . + . mRNA SPAC19E9.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19E9.02" ; systematic_id "SPAC19E9.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 1357811 1358292 . - . misc_RNA SPNCRNA.86 ; db_xref "EMBL:AU010322" ; systematic_id "SPNCRNA.86" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU010322; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU010322; date=20050412 ||| term=genome organization, low complexity gene free region; qualifier=predicted; db_xref=EMBL:AU010322; cv=genome_org; date=20050412" ; gene "SPNCRNA.86" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB misc_feature 1357811 1362174 . + . misc_feature unknown_1167 ; note "low complexity gene-free region" ;
chromosome1 GeneDB misc_feature 1359956 1360575 . + . misc_feature unknown_1168 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG231 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 1362175 1362570 . + . mRNA SPAC19E9.03 ; Alias "pas1" ; ID "SPAC19E9.03" ; db_xref "EMBL:AB045126" ; systematic_id "SPAC19E9.03" ; primary_name "pas1" ; gene "pas1 ||| SPAC57A10.01 ||| SPAC19E9.03" ;
chromosome1 GeneDB CDS_parts 1362571 1363806 . + . mRNA SPAC19E9.03 ; systematic_id "SPAC19E9.03" ; colour "2" ; gene "pas1 ||| SPAC57A10.01 ||| SPAC19E9.03" ; Alias "pas1" ; db_xref "SPD:19/19D07" ; synonym "SPAC57A10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; db_xref=PMID:10982385; date=19700101 ||| term=orthologous to S. cerevisiae YHR071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000307; cyclin dependent protein kinase holoenzyme complex
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0005515; protein binding
GO:2000045; regulation of G1/S transition of mitotic cell cycle
GO:0043433; negative regulation of transcription factor activity
GO:0000083; positive regulation of transcription involved in G1/S-phase of mitotic cell cycle
GO:0006468; protein phosphorylation
GO:0010963; regulation of L-arginine import
GO:0010963; regulation of L-arginine import
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0031647; regulation of protein stability
GO:0007165; signal transduction
GO:0007089; traversing start control point of mitotic cell cycle" ; primary_name "pas1" ; product "cyclin Pas1" ;
chromosome1 GeneDB CDS 1362571 1363806 . + . mRNA SPAC19E9.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 1362868 1363069 . + . misc_feature unknown_1169 ; note "nominal overlap with cosmid SPAC19E9 and cosmid SPAC57A10" ;
chromosome1 GeneDB 3'-UTR 1363807 1364122 . + . mRNA SPAC19E9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19E9.03" ; systematic_id "SPAC19E9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1364837 1364845 . + . mRNA SPAC57A10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1364846 1367173 . + . mRNA SPAC57A10.02 ; systematic_id "SPAC57A10.02" ; colour "2" ; gene "cdr2 ||| SPAC57A10.02" ; Alias "cdr2" ; db_xref "SPD:28/28D01" ; GO "GO:0031097; medial cortex
GO:0071341; medial cortical node
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0034613; cellular protein localization
GO:0010971; positive regulation of G2/M transition of mitotic cell cycle
GO:0006468; protein amino acid phosphorylation
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0008361; regulation of cell size
GO:0071775; regulation of cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9843577; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9843577; date=20100705 ||| term=orthologous to S. cerevisiae YCL024W and YDR507C and YKL101W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Wee1; qualifier=phosphorylates; db_xref=PMID:9843572; date=20090826 ||| term=localization target Mid1; db_xref=PMID:19474789; date=20090826 ||| term=localization target Cdr1; db_xref=PMID:19474789; date=20090826 ||| term=localization target Wee1; db_xref=PMID:19474789; date=20090826 ||| term=target of Pom1; qualifier=phosphorylated_by; evidence=IDA; db_xref=PMID:19474792; date=20090826 ||| term=localization dependent on Pom1; db_xref=PMID:19474792; date=20090826" ; primary_name "cdr2" ; product "serine/threonine protein kinase Cdr2" ;
chromosome1 GeneDB CDS 1364846 1367173 . + . mRNA SPAC57A10.02 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1367174 1367640 . + . mRNA SPAC57A10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC57A10.02" ; systematic_id "SPAC57A10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1368172 1368210 . + . mRNA SPAC57A10.03 ; Alias "cyp1" ; ID "SPAC57A10.03" ; systematic_id "SPAC57A10.03" ; primary_name "cyp1" ; gene "cyp1 ||| SPAC57A10.03" ; note "mRNA from AF337536" ;
chromosome1 GeneDB CDS_parts 1368211 1369109 . + . mRNA SPAC57A10.03 ; systematic_id "SPAC57A10.03" ; colour "2" ; gene "cyp1 ||| SPAC57A10.03" ; Alias "cyp1" ; obsolete_name "cyp2" ; db_xref "SPD:12/12C08" ; GO "GO:0003755; peptidyl-prolyl cis-trans isomerase activity
GO:0005515; protein binding
GO:0006457; protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cyp1" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp1" ; EC_number "5.2.1.8" ;
chromosome1 GeneDB CDS 1368211 1368240 . + . mRNA SPAC57A10.03 ; colour "2" ;
chromosome1 GeneDB CDS 1368281 1368322 . + . mRNA SPAC57A10.03 ; colour "2" ;
chromosome1 GeneDB CDS 1368388 1368441 . + . mRNA SPAC57A10.03 ; colour "2" ;
chromosome1 GeneDB CDS 1368646 1368725 . + . mRNA SPAC57A10.03 ; colour "2" ;
chromosome1 GeneDB CDS 1368808 1368904 . + . mRNA SPAC57A10.03 ; colour "2" ;
chromosome1 GeneDB CDS 1368945 1369109 . + . mRNA SPAC57A10.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 1368241 1368246 . + . misc_feature unknown_1170 ; colour "2" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 1368241 1368280 . + . intron SPAC57A10.03 ; Alias "cyp1" ; db_xref "SPD:12/12C08" ; systematic_id "SPAC57A10.03" ; primary_name "cyp1" ; gene "cyp1 ||| SPAC57A10.03" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1368267 1368280 . + . misc_feature unknown_1171 ; colour "2" ; note "ttaacattttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1368323 1368328 . + . misc_feature unknown_1172 ; colour "2" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB intron 1368323 1368387 . + . intron SPAC57A10.03 ; Alias "cyp1" ; db_xref "SPD:12/12C08" ; systematic_id "SPAC57A10.03" ; primary_name "cyp1" ; gene "cyp1 ||| SPAC57A10.03" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1368377 1368387 . + . misc_feature unknown_1173 ; colour "2" ; note "ctaacttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1368442 1368447 . + . misc_feature unknown_1174 ; colour "2" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1368442 1368645 . + . intron SPAC57A10.03 ; Alias "cyp1" ; db_xref "SPD:12/12C08" ; systematic_id "SPAC57A10.03" ; primary_name "cyp1" ; gene "cyp1 ||| SPAC57A10.03" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1368633 1368645 . + . misc_feature unknown_1175 ; colour "2" ; note "ctaattaaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1368726 1368731 . + . misc_feature unknown_1176 ; colour "2" ; note "gtaggc, splice donor sequence" ;
chromosome1 GeneDB intron 1368726 1368807 . + . intron SPAC57A10.03 ; Alias "cyp1" ; db_xref "SPD:12/12C08" ; systematic_id "SPAC57A10.03" ; primary_name "cyp1" ; gene "cyp1 ||| SPAC57A10.03" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1368796 1368807 . + . misc_feature unknown_1177 ; colour "2" ; note "ttaattgattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1368905 1368910 . + . misc_feature unknown_1178 ; colour "2" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB intron 1368905 1368944 . + . intron SPAC57A10.03 ; Alias "cyp1" ; db_xref "SPD:12/12C08" ; systematic_id "SPAC57A10.03" ; primary_name "cyp1" ; gene "cyp1 ||| SPAC57A10.03" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1368931 1368944 . + . misc_feature unknown_1179 ; colour "2" ; note "ttaaccatcttcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1369110 1369574 . + . mRNA SPAC57A10.03 ; Alias "cyp1" ; ID "SPAC57A10.03" ; db_xref "SPD:12/12C08" ; systematic_id "SPAC57A10.03" ; primary_name "cyp1" ; gene "cyp1 ||| SPAC57A10.03" ; note "mRNA from AU012641" ;
chromosome1 GeneDB CDS_parts 1370197 1371276 . + . mRNA SPAC57A10.04 ; systematic_id "SPAC57A10.04" ; colour "10" ; gene "SPAC57A10.04 ||| mug10" ; db_xref "SPD:16/16G02" ; Alias "mug10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103" ; primary_name "mug10" ; product "Rho guanine nucleotide exchange factor (predicted)" ;
chromosome1 GeneDB CDS 1370197 1370394 . + . mRNA SPAC57A10.04 ; colour "10" ;
chromosome1 GeneDB CDS 1370458 1371276 . + . mRNA SPAC57A10.04 ; colour "10" ;
chromosome1 GeneDB misc_feature 1370395 1370400 . + . misc_feature unknown_1180 ; colour "6" ; note "gtaacg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1370446 1370457 . + . misc_feature unknown_1181 ; colour "6" ; note "cttacattttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1371600 1371717 . - . mRNA SPAC57A10.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC57A10.14" ; systematic_id "SPAC57A10.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1371718 1372307 . - . mRNA SPAC57A10.14 ; systematic_id "SPAC57A10.14" ; colour "2" ; gene "sgf11 ||| SPAC57A10.14" ; db_xref "SPD:52/52E02" ; Alias "sgf11" ; GO "GO:0016573; histone acetylation
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0016578; histone deubiquitination
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL047W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, new gene; date=20050101" ; primary_name "sgf11" ; product "SAGA complex subunit Sgf11" ;
chromosome1 GeneDB CDS 1371718 1372044 . - . mRNA SPAC57A10.14 ; colour "2" ;
chromosome1 GeneDB CDS 1372281 1372307 . - . mRNA SPAC57A10.14 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1372306 1372480 . - . mRNA SPAC57A10.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A10.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1372813 1373065 . - . mRNA SPAC57A10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC57A10.05c" ; systematic_id "SPAC57A10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1373066 1374883 . - . mRNA SPAC57A10.05c ; systematic_id "SPAC57A10.05c" ; colour "2" ; gene "pof1 ||| SPAC57A10.05c" ; Alias "pof1" ; db_xref "SPD:36/36F07" ; GO "GO:0019005; SCF ubiquitin ligase complex
GO:0000152; nuclear ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle
GO:0071276; cellular response to cadmium ion
GO:0071276; cellular response to cadmium ion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15147268; date=19700101 ||| term=orthologous to S. cerevisiae YIL046W; date=19700101 ||| term=WD repeat protein; date=20080125 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human FBXW7 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=target is Zip1; db_xref=PMID:15660136; date=20100823" ; primary_name "pof1" ; product "F-box/WD repeat protein protein Pof1" ;
chromosome1 GeneDB CDS 1373066 1374883 . - . mRNA SPAC57A10.05c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1374882 1375561 . - . mRNA SPAC57A10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1376587 1377072 . + . mRNA SPAC57A10.06 ; systematic_id "SPAC57A10.06" ; colour "8" ; gene "SPAC57A10.06 ||| mug15" ; db_xref "SPD:04/04E07" ; Alias "mug15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug15" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1376587 1376947 . + . mRNA SPAC57A10.06 ; colour "8" ;
chromosome1 GeneDB CDS 1377032 1377072 . + . mRNA SPAC57A10.06 ; colour "8" ;
chromosome1 GeneDB misc_feature 1376948 1376953 . + . misc_feature unknown_1182 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1377015 1377031 . + . misc_feature unknown_1183 ; colour "6" ; note "ttaactagaaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 1377265 1377304 . + . mRNA SPAC57A10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1377305 1378240 . + . mRNA SPAC57A10.07 ; db_xref "SPD:13/13B02" ; systematic_id "SPAC57A10.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR238W; date=19700101 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; colour "10" ; gene "SPAC57A10.07" ; product "conserved protein (fungal and protazoan)" ;
chromosome1 GeneDB CDS 1377305 1378240 . + . mRNA SPAC57A10.07 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1378241 1378420 . + . mRNA SPAC57A10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC57A10.07" ; systematic_id "SPAC57A10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1378369 1378560 . - . mRNA SPAC57A10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC57A10.08c" ; systematic_id "SPAC57A10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1378561 1379746 . - . mRNA SPAC57A10.08c ; db_xref "SPD:18/18H03" ; systematic_id "SPAC57A10.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=abhydrolase family; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827 ||| term=orthologous to S. cerevisiae YBR204C; date=20100827" ; colour "10" ; gene "SPAC57A10.08c" ; product "carboxylic ester hydrolase activity (predicted)" ;
chromosome1 GeneDB CDS 1378561 1378620 . - . mRNA SPAC57A10.08c ; colour "10" ;
chromosome1 GeneDB CDS 1378663 1378773 . - . mRNA SPAC57A10.08c ; colour "10" ;
chromosome1 GeneDB CDS 1378823 1379746 . - . mRNA SPAC57A10.08c ; colour "10" ;
chromosome1 GeneDB misc_feature 1378774 1378789 . - . misc_feature unknown_1184 ; colour "6" ; note "ctgacttttatcatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1378817 1378822 . - . misc_feature unknown_1185 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1379745 1379850 . - . mRNA SPAC57A10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1380312 1380837 . - . mRNA SPAC57A10.09c ; ID "SPAC57A10.09c" ; db_xref "SPD:08/08B11" ; systematic_id "SPAC57A10.09c" ; gene "SPAC57A10.09c ||| nhp6" ; note "mRNA from AU009518" ;
chromosome1 GeneDB CDS_parts 1380838 1381536 . - . mRNA SPAC57A10.09c ; systematic_id "SPAC57A10.09c" ; colour "7" ; gene "SPAC57A10.09c ||| nhp6" ; Alias "nhp6" ; db_xref "SPD:08/08B11" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0030528; transcription regulator activity
GO:0006338; chromatin remodeling
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0006359; regulation of transcription from RNA polymerase III promoter
GO:0006334; nucleosome assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=orthologous to S. cerevisiae YBR089C-A and YPR052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nhp6" ; product "High-mobility group non-histone chromatin protein (predicted)" ;
chromosome1 GeneDB CDS 1380838 1380975 . - . mRNA SPAC57A10.09c ; colour "7" ;
chromosome1 GeneDB CDS 1381268 1381326 . - . mRNA SPAC57A10.09c ; colour "7" ;
chromosome1 GeneDB CDS 1381407 1381536 . - . mRNA SPAC57A10.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 1380976 1380990 . - . misc_feature unknown_1186 ; colour "2" ; note "ctaacccaattttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1380976 1381267 . - . intron SPAC57A10.09c ; db_xref "SPD:08/08B11" ; systematic_id "SPAC57A10.09c" ; gene "SPAC57A10.09c ||| nhp6" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1381262 1381267 . - . misc_feature unknown_1187 ; colour "2" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1381327 1381339 . - . misc_feature unknown_1188 ; colour "2" ; note "ctaacgcgttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1381327 1381406 . - . intron SPAC57A10.09c ; db_xref "SPD:08/08B11" ; systematic_id "SPAC57A10.09c" ; gene "SPAC57A10.09c ||| nhp6" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1381401 1381406 . - . misc_feature unknown_1189 ; colour "2" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1381537 1381558 . - . mRNA SPAC57A10.09c ; ID "SPAC57A10.09c" ; systematic_id "SPAC57A10.09c" ; gene "SPAC57A10.09c ||| nhp6" ; note "mRNA from AU009967" ;
chromosome1 GeneDB 3'-UTR 1382425 1382541 . - . mRNA SPAC57A10.10c ; Alias "sla1" ; ID "SPAC57A10.10c" ; db_xref "SPD:13/13H03 ||| EMBL:AB011371" ; systematic_id "SPAC57A10.10c" ; primary_name "sla1" ; gene "sla1 ||| SPAC57A10.10c" ;
chromosome1 GeneDB CDS_parts 1382542 1383513 . - . mRNA SPAC57A10.10c ; systematic_id "SPAC57A10.10c" ; colour "2" ; gene "sla1 ||| SPAC57A10.10c" ; Alias "sla1" ; db_xref "SPD:13/13H03" ; GO "GO:0031137; regulation of conjugation with cellular fusion
GO:0003723; RNA binding
GO:0008033; tRNA processing
GO:0005634; nucleus
GO:0034307; regulation of ascospore formation
GO:0042779; removal of tRNA 3'-trailer sequence
GO:0006386; transcription termination from RNA polymerase III promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9404894; date=19700101 ||| term=target of Mei3; qualifier=indirect; db_xref=PMID:14665462; date=19700101 ||| term=target is Mei2; qualifier=indirect; db_xref=PMID:14665462; date=19700101 ||| term=orthologous to S. cerevisiae YDL051W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:9404894; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sla1" ; product "La protein homolog" ;
chromosome1 GeneDB CDS 1382542 1383224 . - . mRNA SPAC57A10.10c ; colour "2" ;
chromosome1 GeneDB CDS 1383300 1383513 . - . mRNA SPAC57A10.10c ; colour "2" ;
chromosome1 GeneDB misc_feature 1383225 1383240 . - . misc_feature unknown_1190 ; colour "2" ; note "ctaacagtatgaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1383225 1383299 . - . intron SPAC57A10.10c ; Alias "sla1" ; db_xref "SPD:13/13H03" ; systematic_id "SPAC57A10.10c" ; primary_name "sla1" ; gene "sla1 ||| SPAC57A10.10c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1383294 1383299 . - . misc_feature unknown_1191 ; colour "2" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1383512 1383535 . - . mRNA SPAC57A10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1383924 1384076 . - . mRNA SPAC57A10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC57A10.11c" ; systematic_id "SPAC57A10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1384077 1385086 . - . mRNA SPAC57A10.11c ; systematic_id "SPAC57A10.11c" ; colour "7" ; gene "tim40 ||| SPAC57A10.11c" ; Alias "tim40" ; db_xref "SPD:15/15A01" ; GO "GO:0042721; mitochondrial inner membrane protein insertion complex
GO:0045041; protein import into mitochondrial intermembrane space" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CHCH domain; date=19700101 ||| term=orthologous to S. cerevisiae YKL195W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tim40" ; product "TIM22 inner membrane protein import complex subunit Tim40 (predicted)" ;
chromosome1 GeneDB CDS 1384077 1384723 . - . mRNA SPAC57A10.11c ; colour "7" ;
chromosome1 GeneDB CDS 1384792 1385086 . - . mRNA SPAC57A10.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 1384724 1384735 . - . misc_feature unknown_1192 ; colour "2" ; note "ctaacaatatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1384786 1384791 . - . misc_feature unknown_1193 ; colour "2" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1385085 1385130 . - . mRNA SPAC57A10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1385368 1385509 . - . mRNA SPAC57A10.12c ; Alias "ura3" ; ID "SPAC57A10.12c" ; db_xref "EMBL:X65114 ||| SPD:20/20F02" ; systematic_id "SPAC57A10.12c" ; gene "ura3 ||| SPAC57A10.12c" ; primary_name "ura3" ;
chromosome1 GeneDB CDS_parts 1385510 1386841 . - . mRNA SPAC57A10.12c ; systematic_id "SPAC57A10.12c" ; colour "2" ; gene "ura3 ||| SPAC57A10.12c" ; note "S. cerevisiae ortholog is cytoplasmic PMID:1409592" ; Alias "ura3" ; db_xref "KEGG:MAP00240; ||| SPD:20/20F02" ; GO "GO:0005739; mitochondrion
GO:0004158; dihydroorotate oxidase activity
GO:0006207; 'de novo' pyrimidine base biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL216W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ura3" ; product "dihydroorotate dehydrogenase Ura3" ; EC_number "1.3.3.1" ;
chromosome1 GeneDB CDS 1385510 1386841 . - . mRNA SPAC57A10.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1386842 1387063 . - . mRNA SPAC57A10.12c ; Alias "ura3" ; ID "SPAC57A10.12c" ; systematic_id "SPAC57A10.12c" ; gene "ura3 ||| SPAC57A10.12c" ; primary_name "ura3" ; note "mRNA from AU006700" ;
chromosome1 GeneDB CDS_parts 1387944 1390352 . + . mRNA SPAC20G8.01 ; systematic_id "SPAC20G8.01" ; colour "2" ; gene "cdc17 ||| SPAC20G8.01" ; Alias "cdc17" ; obsolete_name "SPAC57A10.13c" ; db_xref "SPD:28/28F07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705 ||| term=orthologous to S. cerevisiae YDL164C; date=19700101 ||| term=complementation, functionally complemented by S. cerevisiae CDC9; db_xref=PMID:6347688; cv=complementation; date=19700101 ||| term=complementation, does not functionally complement S. cerevisiae CDC9; db_xref=PMID:3011605; cv=complementation; date=19700101 ||| term=gene expression, expression induced by UV; db_xref=PMID:3329047; cv=gene_ex; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14752051; date=20071210 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, alternative translation; cv=gene_ex; date=20090908 ||| term=disease associated, immunodeficiency; date=20090908 ||| term=disease associated, cancer; date=20090908 ||| term=protein sequence feature, mitochondrial signal sequence; cv=sequence_feature; residue=1-20; db_xref=PMID:14752051; date=20091216" ; GO "GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0003910; DNA ligase (ATP) activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006310; DNA recombination
GO:0043137; DNA replication, removal of RNA primer
GO:0006284; base-excision repair
GO:0006273; lagging strand elongation
GO:0006289; nucleotide-excision repair
GO:0000723; telomere maintenance
GO:0007090; regulation of S-phase of mitotic cell cycle" ; primary_name "cdc17" ; product "ATP-dependent DNA ligase Cdc17" ; EC_number "6.5.1.1" ;
chromosome1 GeneDB CDS 1387944 1388026 . + . mRNA SPAC20G8.01 ; colour "2" ;
chromosome1 GeneDB CDS 1388067 1388574 . + . mRNA SPAC20G8.01 ; colour "2" ;
chromosome1 GeneDB CDS 1388637 1390352 . + . mRNA SPAC20G8.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 1388027 1388032 . + . misc_feature unknown_1194 ; colour "2" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1388054 1388066 . + . misc_feature unknown_1195 ; colour "2" ; note "ctaacccatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1388575 1388580 . + . misc_feature unknown_1196 ; colour "2" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1388615 1388636 . + . misc_feature unknown_1197 ; colour "2" ; note "ctaacgtctttttttacattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1389264 1389467 . + . misc_feature unknown_1198 ; note "nominal overlap with cosmid SPAC57A10 and cosmid SPAC20G8" ;
chromosome1 GeneDB 3'-UTR 1390353 1390522 . + . mRNA SPAC20G8.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20G8.01" ; systematic_id "SPAC20G8.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1390637 1392910 . + . mRNA SPAC20G8.02 ; db_xref "SPD:46/46G07" ; systematic_id "SPAC20G8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0046872; metal ion binding
GO:0004620; phospholipase activity
GO:0044242; cellular lipid catabolic process" ; gene "SPAC20G8.02" ; product "mitochondrial DDHD family phospholipase (predicted)" ;
chromosome1 GeneDB CDS 1390637 1392910 . + . mRNA SPAC20G8.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1392911 1392999 . + . mRNA SPAC20G8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20G8.02" ; systematic_id "SPAC20G8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 1393082 1393528 . - . misc_RNA SPNCRNA.58 ; Alias "prl58" ; db_xref "EMBL:AB084870 ||| PMID:12597277" ; systematic_id "SPNCRNA.58" ; controlled_curation "term=; qualifier=predicted; db_xref=PMID:12597277; date=20050412 ||| term=protein sequence feature, poly(A)-bearing RNA; cv=sequence_feature; qualifier=predicted; db_xref=PMID:12597277; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl58" ; gene "prl58 ||| SPNCRNA.58" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome1 GeneDB 5'-UTR 1393601 1393895 . + . mRNA SPAC20G8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1393896 1395569 . + . mRNA SPAC20G8.03 ; systematic_id "SPAC20G8.03" ; colour "2" ; gene "itr2 ||| SPAC20G8.03" ; Alias "itr2" ; db_xref "SPD:35/35A05" ; GO "GO:0005365; myo-inositol transmembrane transporter activity
GO:0005365; myo-inositol transmembrane transporter activity
GO:0015798; myo-inositol transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR497C and YOL103W and YDR387C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9560432; date=20080328 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "itr2" ; product "MFS myo-inositol transporter" ;
chromosome1 GeneDB CDS 1393896 1395569 . + . mRNA SPAC20G8.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1395570 1395820 . + . mRNA SPAC20G8.03 ; Alias "itr2" ; ID "SPAC20G8.03" ; db_xref "SPD:35/35A05" ; systematic_id "SPAC20G8.03" ; primary_name "itr2" ; gene "itr2 ||| SPAC20G8.03" ; note "mRNA from SPD252" ;
chromosome1 GeneDB 3'-UTR 1395856 1396024 . - . mRNA SPAC20G8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20G8.04c" ; systematic_id "SPAC20G8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1396025 1397923 . - . mRNA SPAC20G8.04c ; db_xref "SPD:46/46B01" ; systematic_id "SPAC20G8.04c" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0051539; 4 iron, 4 sulfur cluster binding
GO:0004174; electron-transferring-flavoprotein dehydrogenase activity
GO:0006116; NADH oxidation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR356W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAC20G8.04c" ; product "mitochondrial electron transfer flavoprotein- ubiquinone oxidoreductase (predicted)" ; EC_number "1.5.5.1" ;
chromosome1 GeneDB CDS 1396025 1397923 . - . mRNA SPAC20G8.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1397922 1398222 . - . mRNA SPAC20G8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 1398600 1398936 . + . LTR unknown_1199 ; note "TF1" ;
chromosome1 GeneDB 3'-UTR 1399200 1399797 . - . mRNA SPAC20G8.05c ; Alias "cdc15" ; ID "SPAC20G8.05c" ; db_xref "SPD:30/30A01" ; systematic_id "SPAC20G8.05c" ; primary_name "cdc15" ; gene "cdc15 ||| SPAC20G8.05c" ; note "mRNA from AU009232" ;
chromosome1 GeneDB CDS_parts 1399798 1402886 . - . mRNA SPAC20G8.05c ; systematic_id "SPAC20G8.05c" ; colour "2" ; gene "cdc15 ||| SPAC20G8.05c" ; db_xref "SPD:30/30A01" ; Alias "cdc15" ; GO "GO:0032153; cell division site
GO:0032153; cell division site
GO:0005737; cytoplasm
GO:0032178; medial membrane band
GO:0043495; protein anchor
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0030866; cortical actin cytoskeleton organization and biogenesis
GO:0000915; cytokinesis, contractile ring formation
GO:0051125; regulation of actin nucleation
GO:0061166; establishment of endoplasmic reticulum localization involved in endoplasmic reticulum polarization
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=20061127 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, multinucleate; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; cv=gene_ex; db_xref=PMID:12411492; date=19700101 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YMR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=disease associated, cancer; date=20100218 ||| term=human GAS7 ortholog; date=20100218" ; primary_name "cdc15" ; product "extended Fer/CIP4 (EFC) doamin protein Cdc15" ;
chromosome1 GeneDB CDS 1399798 1399970 . - . mRNA SPAC20G8.05c ; colour "2" ;
chromosome1 GeneDB CDS 1400027 1402464 . - . mRNA SPAC20G8.05c ; colour "2" ;
chromosome1 GeneDB CDS 1402656 1402747 . - . mRNA SPAC20G8.05c ; colour "2" ;
chromosome1 GeneDB CDS 1402806 1402886 . - . mRNA SPAC20G8.05c ; colour "2" ;
chromosome1 GeneDB misc_feature 1399971 1399985 . - . misc_feature unknown_1200 ; colour "6" ; note "ctaattataattcag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1400021 1400026 . - . misc_feature unknown_1201 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1402465 1402477 . - . misc_feature unknown_1202 ; colour "6" ; note "ctaactaaattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1402650 1402655 . - . misc_feature unknown_1203 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1402885 1402951 . - . mRNA SPAC20G8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 1403019 1403026 . - . promoter unknown_1204 ; db_xref "PMID:12411492" ;
chromosome1 GeneDB 5'-UTR 1403170 1403321 . + . mRNA SPAC20G8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1403322 1409624 . + . mRNA SPAC20G8.06 ; systematic_id "SPAC20G8.06" ; colour "7" ; gene "not1 ||| SPAC20G8.06" ; Alias "not1" ; db_xref "SPD:34/34C04" ; GO "GO:0030015; CCR4-NOT core complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006354; RNA elongation
GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0006402; mRNA catabolism
GO:0000289; poly(A) tail shortening" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "not1" ; product "CCR4-Not complex subunit Not1 (predicted)" ;
chromosome1 GeneDB CDS 1403322 1409624 . + . mRNA SPAC20G8.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1409625 1409763 . + . mRNA SPAC20G8.06 ; Alias "not1" ; ID "SPAC20G8.06" ; db_xref "SPD:34/34C04" ; systematic_id "SPAC20G8.06" ; primary_name "not1" ; gene "not1 ||| SPAC20G8.06" ; note "mRNA from AU009597" ;
chromosome1 GeneDB 3'-UTR 1410157 1410475 . - . mRNA SPAC20G8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20G8.07c" ; systematic_id "SPAC20G8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1410476 1411135 . - . mRNA SPAC20G8.07c ; systematic_id "SPAC20G8.07c" ; colour "2" ; gene "SPAC20G8.07c ||| erg2" ; Alias "erg2" ; db_xref "SPD:34/34D12" ; GO "GO:0005783; endoplasmic reticulum
GO:0000247; C-8 sterol isomerase activity
GO:0030437; ascospore formation
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthesis
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane
GO:0006623; protein targeting to vacuole" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR202W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sporulation defects; db_xref=PMID:18310029; cv=phenotype; date=20091124" ; primary_name "erg2" ; product "C-8 sterol isomerase Erg2" ; EC_number "5.3.3.5" ;
chromosome1 GeneDB CDS 1410476 1411135 . - . mRNA SPAC20G8.07c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1411134 1411201 . - . mRNA SPAC20G8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1411695 1412061 . - . mRNA SPAC20G8.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20G8.08c" ; systematic_id "SPAC20G8.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1412062 1415062 . - . mRNA SPAC20G8.08c ; systematic_id "SPAC20G8.08c" ; colour "7" ; gene "fft1 ||| SPAC20G8.08c" ; Alias "fft1" ; db_xref "SPD:47/47F12" ; GO "GO:0016585; chromatin remodeling complex
GO:0006338; chromatin remodeling
GO:0005634; nucleus
GO:0004003; ATP-dependent DNA helicase activity
GO:0005524; ATP binding
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=similar to S. pombe SPCC1235.05C and SPAC25A8.01C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fft1" ; product "fun thirty related protein Fft1 (predicted)" ; reserved_name "fft1" ;
chromosome1 GeneDB CDS 1412062 1412214 . - . mRNA SPAC20G8.08c ; colour "7" ;
chromosome1 GeneDB CDS 1412262 1412792 . - . mRNA SPAC20G8.08c ; colour "7" ;
chromosome1 GeneDB CDS 1412836 1413237 . - . mRNA SPAC20G8.08c ; colour "7" ;
chromosome1 GeneDB CDS 1413276 1413410 . - . mRNA SPAC20G8.08c ; colour "7" ;
chromosome1 GeneDB CDS 1413449 1415062 . - . mRNA SPAC20G8.08c ; colour "7" ;
chromosome1 GeneDB misc_feature 1412215 1412228 . - . misc_feature unknown_1205 ; colour "6" ; note "ctaacgtggtatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1412256 1412261 . - . misc_feature unknown_1206 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1412793 1412805 . - . misc_feature unknown_1207 ; colour "6" ; note "ctaactattacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1412830 1412835 . - . misc_feature unknown_1208 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1413238 1413251 . - . misc_feature unknown_1209 ; colour "6" ; note "ctaatttttgctag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1413270 1413275 . - . misc_feature unknown_1210 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1413411 1413422 . - . misc_feature unknown_1211 ; colour "6" ; note "ctcctcttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1413443 1413448 . - . misc_feature unknown_1212 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1415061 1415162 . - . mRNA SPAC20G8.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G8.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1415452 1415541 . - . mRNA SPAC20G8.09c ; ID "SPAC20G8.09c" ; db_xref "SPD:48/48A10" ; systematic_id "SPAC20G8.09c" ; note "mRNA from AU009291" ;
chromosome1 GeneDB CDS_parts 1415542 1418750 . - . mRNA SPAC20G8.09c ; db_xref "SPD:48/48A10" ; obsolete_name "nat10" ; systematic_id "SPAC20G8.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL132W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005730; nucleolus
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0042274; ribosome small subunit biogenesis
GO:0030686; 90S preribosome
GO:0070317; negative regulation of G1 to G0 transition" ; product "ribosome biogenesis ATPase (predicted)" ;
chromosome1 GeneDB CDS 1415542 1418440 . - . mRNA SPAC20G8.09c ; colour "7" ;
chromosome1 GeneDB CDS 1418509 1418654 . - . mRNA SPAC20G8.09c ; colour "7" ;
chromosome1 GeneDB CDS 1418694 1418750 . - . mRNA SPAC20G8.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 1418441 1418453 . - . misc_feature unknown_1213 ; colour "6" ; note "ttaacccatatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1418503 1418508 . - . misc_feature unknown_1214 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1418655 1418668 . - . misc_feature unknown_1215 ; colour "6" ; note "ctgacaaagattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1418688 1418693 . - . misc_feature unknown_1216 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 1419073 1420467 . - . mRNA SPAC20G8.10c ; systematic_id "SPAC20G8.10c" ; colour "2" ; db_xref "SPD:21/21E11" ; Alias "atg6" ; synonym "SPAC3A12.01c" ; GO "GO:0032258; CVT pathway
GO:0030433; ER-associated protein catabolism
GO:0045324; late endosome to vacuole transport
GO:0034271; phosphatidylinositol 3-kinase complex I
GO:0006661; phosphatidylinositol biosynthetic process
GO:0042147; retrograde transport, endosome to Golgi
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL120W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atg6" ; product "beclin family protein, involved in autophagy" ;
chromosome1 GeneDB CDS 1419073 1420467 . - . mRNA SPAC20G8.10c ; colour "2" ;
chromosome1 GeneDB misc_feature 1419354 1419463 . + . misc_feature unknown_1217 ; note "nominal overlap with cosmid SPAC3A12 and cosmid SPAC20G8" ;
chromosome1 GeneDB tRNA 1421149 1421221 . + . tRNA SPATRNACYS.01 ; systematic_id "SPATRNACYS.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033455; GCA codon-amino acid adaptor activity" ; gene "SPATRNACYS.01" ; product "tRNA Cysteine" ; note "tRNA Cys anticodon GCA, Cove score 70.58" ;
chromosome1 GeneDB 5'-UTR 1421817 1421915 . + . mRNA SPAC3A12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1421916 1422942 . + . mRNA SPAC3A12.02 ; db_xref "SPD:15/15E03" ; systematic_id "SPAC3A12.02" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0004427; inorganic diphosphatase activity
GO:0000287; magnesium ion binding
GO:0006796; phosphate metabolic process
GO:0009060; aerobic respiration" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR011C and YMR267W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=subunit composition, homodimer; cv=subunit_composition; qualifier=predicted; evidence=ISS; date=20090907" ; gene "SPAC3A12.02" ; product "mitochondrial inorganic diphosphatase (predicted)" ; EC_number "3.6.1.1" ;
chromosome1 GeneDB CDS 1421916 1422071 . + . mRNA SPAC3A12.02 ; colour "7" ;
chromosome1 GeneDB CDS 1422180 1422552 . + . mRNA SPAC3A12.02 ; colour "7" ;
chromosome1 GeneDB CDS 1422611 1422942 . + . mRNA SPAC3A12.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 1422072 1422077 . + . misc_feature unknown_1218 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1422159 1422179 . + . misc_feature unknown_1219 ; colour "6" ; note "ctaacaatttttttcaactag, splice branch and acceptor se quence" ;
chromosome1 GeneDB misc_feature 1422553 1422558 . + . misc_feature unknown_1220 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1422598 1422610 . + . misc_feature unknown_1221 ; colour "6" ; note "ctaactttcttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 1422943 1422972 . + . mRNA SPAC3A12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A12.02" ; systematic_id "SPAC3A12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1423029 1423239 . - . mRNA SPAC3A12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A12.03c" ; systematic_id "SPAC3A12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1423240 1424169 . - . mRNA SPAC3A12.03c ; systematic_id "SPAC3A12.03c" ; colour "7" ; db_xref "SPD:13/13A03" ; Alias "meu34" ; synonym "mug145" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=20100426" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination" ; primary_name "meu34" ; product "ubiquitin-protein ligase E3 Meu34 (predicted)" ;
chromosome1 GeneDB CDS 1423240 1424169 . - . mRNA SPAC3A12.03c ; colour "7" ;
chromosome1 GeneDB CDS_parts 1424697 1425562 . - . mRNA SPAC3A12.04c ; db_xref "SPD:43/43B08" ; systematic_id "SPAC3A12.04c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0008033; tRNA processing
GO:0005655; nucleolar ribonuclease P complex
GO:0000172; ribonuclease MRP complex
GO:0006364; rRNA processing
GO:0004526; ribonuclease P activity
GO:0000171; ribonuclease MRP activity" ; gene "SPAC3A12.04c" ; product "RNase P and RNase MRP subunit p30 (predicted)" ; EC_number "3.1.26.5" ;
chromosome1 GeneDB CDS 1424697 1425161 . - . mRNA SPAC3A12.04c ; colour "7" ;
chromosome1 GeneDB CDS 1425231 1425329 . - . mRNA SPAC3A12.04c ; colour "7" ;
chromosome1 GeneDB CDS 1425372 1425430 . - . mRNA SPAC3A12.04c ; colour "7" ;
chromosome1 GeneDB CDS 1425478 1425562 . - . mRNA SPAC3A12.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 1425162 1425176 . - . misc_feature unknown_1222 ; colour "6" ; note "ctaacattgccttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1425225 1425230 . - . misc_feature unknown_1223 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1425330 1425342 . - . misc_feature unknown_1224 ; colour "6" ; note "cttactaacttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1425366 1425371 . - . misc_feature unknown_1225 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 1426054 1426212 . - . mRNA SPAC3A12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A12.05c" ; systematic_id "SPAC3A12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1426213 1429913 . - . mRNA SPAC3A12.05c ; systematic_id "SPAC3A12.05c" ; colour "7" ; gene "taf2 ||| SPAC3A12.05c" ; Alias "taf2" ; db_xref "SPD:48/48C10" ; GO "GO:0016251; general RNA polymerase II transcription factor activity
GO:0005669; transcription factor TFIID complex
GO:0006367; transcription initiation from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YCR042C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "taf2" ; product "TATA-binding protein associated factor Taf2 (predicted)" ;
chromosome1 GeneDB CDS 1426213 1427148 . - . mRNA SPAC3A12.05c ; colour "7" ;
chromosome1 GeneDB CDS 1427189 1429617 . - . mRNA SPAC3A12.05c ; colour "7" ;
chromosome1 GeneDB CDS 1429709 1429830 . - . mRNA SPAC3A12.05c ; colour "7" ;
chromosome1 GeneDB CDS 1429882 1429913 . - . mRNA SPAC3A12.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 1427149 1427158 . - . misc_feature unknown_1226 ; colour "6" ; note "ctaatattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1427183 1427188 . - . misc_feature unknown_1227 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1429569 1429584 . - . misc_feature unknown_1228 ; colour "6" ; note "ctaactaaattttcctatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1429638 1429643 . - . misc_feature unknown_1229 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1429912 1429956 . - . mRNA SPAC3A12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1430231 1430423 . - . mRNA SPAC3A12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A12.06c" ; systematic_id "SPAC3A12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1430424 1432655 . - . mRNA SPAC3A12.06c ; db_xref "SPD:46/46G06" ; systematic_id "SPAC3A12.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDL206W and YJR106W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; colour "7" ; gene "SPAC3A12.06c" ; product "sodium/calcium exchanger (predicted)" ;
chromosome1 GeneDB CDS 1430424 1432655 . - . mRNA SPAC3A12.06c ; colour "7" ;
chromosome1 GeneDB CDS_parts 1433049 1433375 . - . mRNA SPAC3A12.19 ; db_xref "SPD:52/52B11" ; systematic_id "SPAC3A12.19" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR282W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, new gene; cv=warning; date=20040904" ; colour "7" ; GO "GO:0006412; protein biosynthesis
GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome" ; product "mitochondrial ribosomal protein subunit L27 (predicted)" ;
chromosome1 GeneDB CDS 1433049 1433153 . - . mRNA SPAC3A12.19 ; colour "7" ;
chromosome1 GeneDB CDS 1433199 1433375 . - . mRNA SPAC3A12.19 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1433938 1433952 . + . mRNA SPAC3A12.07 ; Alias "rpb11" ; ID "SPAC3A12.07" ; systematic_id "SPAC3A12.07" ; gene "rpb11 ||| SPAC3A12.07" ; primary_name "rpb11" ; note "mRNA from AF027822" ;
chromosome1 GeneDB CDS_parts 1433953 1434415 . + . mRNA SPAC3A12.07 ; systematic_id "SPAC3A12.07" ; colour "2" ; gene "rpb11 ||| SPAC3A12.07" ; Alias "rpb11" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:04/04B11" ; GO "GO:0006366; transcription from RNA polymerase II promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0003677; DNA binding
GO:0005665; DNA-directed RNA polymerase II, core complex
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpb11" ; product "RNA polymerase II complex subunit Rpb11" ;
chromosome1 GeneDB CDS 1433953 1434002 . + . mRNA SPAC3A12.07 ; colour "2" ;
chromosome1 GeneDB CDS 1434048 1434137 . + . mRNA SPAC3A12.07 ; colour "2" ;
chromosome1 GeneDB CDS 1434184 1434415 . + . mRNA SPAC3A12.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 1434003 1434008 . + . misc_feature unknown_1230 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB intron 1434003 1434047 . + . intron SPAC3A12.07 ; Alias "rpb11" ; db_xref "EMBL:D85902 ||| SPD:04/04B11" ; systematic_id "SPAC3A12.07" ; gene "rpb11 ||| SPAC3A12.07" ; primary_name "rpb11" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1434035 1434047 . + . misc_feature unknown_1231 ; colour "6" ; note "ttaaccagtgtag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1434138 1434143 . + . misc_feature unknown_1232 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 1434138 1434183 . + . intron SPAC3A12.07 ; Alias "rpb11" ; db_xref "EMBL:D85902 ||| SPD:04/04B11" ; systematic_id "SPAC3A12.07" ; gene "rpb11 ||| SPAC3A12.07" ; primary_name "rpb11" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1434166 1434183 . + . misc_feature unknown_1233 ; colour "6" ; note "ctaactgctttttcgaag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB 3'-UTR 1434416 1434842 . + . mRNA SPAC3A12.07 ; Alias "rpb11" ; ID "SPAC3A12.07" ; db_xref "SPD:04/04B11" ; systematic_id "SPAC3A12.07" ; gene "rpb11 ||| SPAC3A12.07" ; primary_name "rpb11" ; note "mRNA from AF027822" ;
chromosome1 GeneDB 5'-UTR 1435073 1435138 . + . mRNA SPAC3A12.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A12.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1435139 1435783 . + . mRNA SPAC3A12.08 ; db_xref "SPD:42/42F05" ; systematic_id "SPAC3A12.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER182W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC3A12.08" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 1435139 1435783 . + . mRNA SPAC3A12.08 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1435784 1435896 . + . mRNA SPAC3A12.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A12.08" ; systematic_id "SPAC3A12.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1436007 1436589 . - . mRNA SPAC3A12.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A12.09c" ; systematic_id "SPAC3A12.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1436590 1437462 . - . mRNA SPAC3A12.09c ; db_xref "SPD:11/11G08" ; systematic_id "SPAC3A12.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0019627; urea metabolic process" ; gene "SPAC3A12.09c" ; product "urease accessory protein UreD (predicted)" ;
chromosome1 GeneDB CDS 1436590 1437462 . - . mRNA SPAC3A12.09c ; colour "7" ;
chromosome1 GeneDB promoter 1438302 1438309 . + . promoter unknown_1234 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB CDS_parts 1438375 1438905 . + . mRNA SPAC3A12.10 ; systematic_id "SPAC3A12.10" ; colour "7" ; gene "rpl2001 ||| rpl20-1 ||| rpl20 ||| yl17b ||| rpl18a-2 ||| SPAC3A12.10" ; Alias "rpl2001" ; db_xref "SPD:05/05D03" ; synonym "rpl20-1 ||| rpl20 ||| yl17b ||| rpl18a-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR242C and YOR312C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl2001" ; product "60S ribosomal protein L20a (predicted)" ;
chromosome1 GeneDB CDS 1438375 1438905 . + . mRNA SPAC3A12.10 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1438906 1438976 . + . mRNA SPAC3A12.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A12.10" ; systematic_id "SPAC3A12.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1439274 1440543 . - . mRNA SPAC3A12.11c ; systematic_id "SPAC3A12.11c" ; colour "2" ; gene "cwf2 ||| prp3 ||| SPAC3A12.11c" ; Alias "cwf2" ; db_xref "SPD:20/20C12" ; synonym "prp3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YDL209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005681; spliceosome complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "cwf2" ; product "RNA-binding protein Cwf2" ;
chromosome1 GeneDB CDS 1439274 1440057 . - . mRNA SPAC3A12.11c ; colour "2" ;
chromosome1 GeneDB CDS 1440112 1440276 . - . mRNA SPAC3A12.11c ; colour "2" ;
chromosome1 GeneDB CDS 1440326 1440543 . - . mRNA SPAC3A12.11c ; colour "2" ;
chromosome1 GeneDB misc_feature 1440277 1440288 . - . misc_feature unknown_1235 ; colour "6" ; note "ctgactttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 1440277 1440325 . - . intron SPAC3A12.11c ; Alias "cwf2" ; db_xref "SPD:20/20C12" ; systematic_id "SPAC3A12.11c" ; primary_name "cwf2" ; gene "cwf2 ||| prp3 ||| SPAC3A12.11c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1440320 1440325 . - . misc_feature unknown_1236 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1441012 1441108 . + . mRNA SPAC3A12.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A12.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1441109 1441969 . + . mRNA SPAC3A12.12 ; systematic_id "SPAC3A12.12" ; colour "7" ; gene "atp11 ||| SPAC3A12.12" ; Alias "atp11" ; db_xref "SPD:11/11E03" ; GO "GO:0005759; mitochondrial matrix
GO:0006461; protein complex assembly
GO:0043461; F-type ATPase complex assembly
GO:0007005; mitochondrion organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL315C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atp11" ; product "F1-ATPase chaperone Atp11 (predicted)" ;
chromosome1 GeneDB CDS 1441109 1441969 . + . mRNA SPAC3A12.12 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1441967 1442260 . - . mRNA SPAC3A12.13c ; ID "SPAC3A12.13c" ; db_xref "SPD:11/11F11" ; systematic_id "SPAC3A12.13c" ; gene "SPAC3A12.13c" ; note "mRNA from AU007724" ;
chromosome1 GeneDB CDS_parts 1442261 1443128 . - . mRNA SPAC3A12.13c ; db_xref "SPD:11/11F11" ; systematic_id "SPAC3A12.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR192C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "2" ; GO "GO:0019843; rRNA binding
GO:0003743; translation initiation factor activity
GO:0030490; processing of 20S pre-rRNA
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0006412; translation
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex" ; gene "SPAC3A12.13c" ; product "translation initiation factor eIF3j (p35)" ;
chromosome1 GeneDB CDS 1442261 1443072 . - . mRNA SPAC3A12.13c ; colour "2" ;
chromosome1 GeneDB CDS 1443116 1443128 . - . mRNA SPAC3A12.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 1443073 1443087 . - . misc_feature unknown_1237 ; colour "6" ; note "ttaactgaaatgaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 1443073 1443115 . - . intron SPAC3A12.13c ; db_xref "SPD:11/11F11" ; systematic_id "SPAC3A12.13c" ; gene "SPAC3A12.13c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1443110 1443115 . - . misc_feature unknown_1238 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB LTR 1444293 1444655 . + . LTR unknown_1239 ; note "611 (+1) 1 358 TF1" ;
chromosome1 GeneDB 5'-UTR 1444864 1444929 . + . mRNA SPAC3A12.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A12.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1444930 1445508 . + . mRNA SPAC3A12.14 ; systematic_id "SPAC3A12.14" ; colour "2" ; gene "cam1 ||| SPAC3A12.14" ; Alias "cam1" ; db_xref "SPD:06/06C03" ; GO "GO:0030427; site of polarized growth
GO:0005816; spindle pole body
GO:0005816; spindle pole body
GO:0005509; calcium ion binding
GO:0005515; protein binding
GO:0031322; ascospore-type prospore-specific spindle pole body remodelling
GO:0071990; maintenance of protein localization at spindle pole body
GO:0033047; regulation of mitotic sister chromatid segregation
GO:0031647; regulation of protein stability
GO:0090307; spindle assembly involved in mitosis
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=calmodulin family; date=19700101 ||| term=EF hand; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9264467; date=19700101 ||| term=orthologous to S. cerevisiae YBR109C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, chromosome segregation defects; qualifier=during_mitosis|required; db_xref=PMID:9264467; date=20100909 ||| term=phenotype, sporulation defects; db_xref=PMID:2690071; date=20101020 ||| term=localization target Spo15; db_xref=PMID:20833892; date=20101111" ; primary_name "cam1" ; product "calmodulin Cam1" ;
chromosome1 GeneDB CDS 1444930 1444932 . + . mRNA SPAC3A12.14 ; colour "2" ;
chromosome1 GeneDB CDS 1445059 1445508 . + . mRNA SPAC3A12.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 1444933 1444938 . + . misc_feature unknown_1240 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1445050 1445058 . + . misc_feature unknown_1241 ; colour "6" ; note "ttattacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 1445509 1446238 . + . mRNA SPAC3A12.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A12.14" ; systematic_id "SPAC3A12.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1446511 1446702 . + . mRNA SPAC3A12.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A12.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1446703 1448973 . + . mRNA SPAC3A12.15 ; systematic_id "SPAC3A12.15" ; colour "7" ; gene "vps53 ||| SPAC3A12.15" ; Alias "vps53" ; db_xref "SPD:28/28B07" ; GO "GO:0000938; GARP complex
GO:0016192; vesicle-mediated transport
GO:0006896; Golgi to vacuole transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps53" ; product "GARP complex subunit Vps53 (predicted)" ;
chromosome1 GeneDB CDS 1446703 1448973 . + . mRNA SPAC3A12.15 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1448974 1449373 . + . mRNA SPAC3A12.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A12.15" ; systematic_id "SPAC3A12.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 1449398 1449469 . - . tRNA SPATRNAPRO.03 ; systematic_id "SPATRNAPRO.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033448; AGG codon-amino acid adaptor activity" ; gene "SPATRNAPRO.03" ; product "tRNA Proline" ; note "tRNA Pro anticodon AGG, Cove score 64.72" ;
chromosome1 GeneDB 3'-UTR 1450031 1450641 . - . mRNA SPAC3A12.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A12.16c" ; systematic_id "SPAC3A12.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1450642 1451210 . - . mRNA SPAC3A12.16c ; systematic_id "SPAC3A12.16c" ; colour "7" ; gene "tim17 ||| SPAC3A12.16c" ; Alias "tim17" ; db_xref "SPD:06/06A04" ; GO "GO:0015450; protein translocase activity
GO:0030150; protein import into mitochondrial matrix
GO:0005744; mitochondrial inner membrane presequence translocase complex
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tim17" ; product "TIM23 translocase complex subunit Tim17 (predicted)" ;
chromosome1 GeneDB CDS 1450642 1451004 . - . mRNA SPAC3A12.16c ; colour "7" ;
chromosome1 GeneDB CDS 1451079 1451210 . - . mRNA SPAC3A12.16c ; colour "7" ;
chromosome1 GeneDB misc_feature 1451005 1451024 . - . misc_feature unknown_1242 ; colour "6" ; note "ctaatgaaattattaattag, splice branch and acceptor seq uence" ;
chromosome1 GeneDB misc_feature 1451073 1451078 . - . misc_feature unknown_1243 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1451209 1451353 . - . mRNA SPAC3A12.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A12.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snoRNA 1451227 1451437 . + . snoRNA SPSNORNA.48 ; Alias "snR96" ; db_xref "EMBL:AJ632014 ||| PMID:15716270" ; systematic_id "SPSNORNA.48" ; gene "SPSNORNA.48" ; primary_name "snR96" ; product "small nucleolar RNA snR96" ;
chromosome1 GeneDB 3'-UTR 1451902 1451956 . - . mRNA SPAC3A12.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A12.17c" ; systematic_id "SPAC3A12.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1451957 1453144 . - . mRNA SPAC3A12.17c ; systematic_id "SPAC3A12.17c" ; colour "2" ; gene "cys12 ||| cys1b ||| SPAC3A12.17c" ; Alias "cys12" ; db_xref "SPD:18/18H08" ; synonym "cys1b" ; GO "GO:0004124; cysteine synthase activity
GO:0006535; cysteine biosynthetic process from serine
GO:0005739; mitochondrion
GO:0019344; cysteine biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cys12" ; product "cysteine synthase Cys12" ; EC_number "2.5.1.47" ;
chromosome1 GeneDB CDS 1451957 1453144 . - . mRNA SPAC3A12.17c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1453143 1453333 . - . mRNA SPAC3A12.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A12.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 1454298 1456366 . + . misc_feature unknown_1244 ; note "nominal overlap with cosmid SPAC9 and cosmid SPAC3A12" ;
chromosome1 GeneDB 5'-UTR 1454707 1454910 . + . mRNA SPAC3A12.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A12.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1454911 1456529 . + . mRNA SPAC3A12.18 ; systematic_id "SPAC3A12.18" ; colour "7" ; gene "zwf1 ||| SPAC3A12.18 ||| SPAC9.01" ; Alias "zwf1" ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00480; ||| SPD:25/25H07" ; synonym "SPAC9.01" ; GO "GO:0009051; pentose-phosphate shunt, oxidative branch
GO:0051156; glucose 6-phosphate metabolic process
GO:0004345; glucose-6-phosphate dehydrogenase activity
GO:0005737; cytoplasm
GO:0033554; cellular response to stress
GO:0006091; generation of precursor metabolites and energy" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, chronic non- spherocytic hemolytic anemia; date=20060920 ||| term=orthologous to S. cerevisiae YNL241C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "zwf1" ; product "glucose-6-phosphate 1-dehydrogenase (predicted)" ; EC_number "1.1.1.49" ;
chromosome1 GeneDB CDS 1454911 1454927 . + . mRNA SPAC3A12.18 ; colour "7" ;
chromosome1 GeneDB CDS 1455044 1456529 . + . mRNA SPAC3A12.18 ; colour "7" ;
chromosome1 GeneDB misc_feature 1454928 1454933 . + . misc_feature unknown_1245 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1455021 1455043 . + . misc_feature unknown_1246 ; colour "6" ; note "ctgaccgagctttttacttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 1456530 1456870 . + . mRNA SPAC3A12.18 ; Alias "zwf1" ; ID "SPAC3A12.18" ; db_xref "SPD:25/25H07" ; systematic_id "SPAC3A12.18" ; primary_name "zwf1" ; gene "zwf1 ||| SPAC3A12.18 ||| SPAC9.01" ; note "mRNA from AU012872" ;
chromosome1 GeneDB CDS_parts 1457143 1457737 . - . mRNA SPAC9.02c ; db_xref "SPD:06/06E08" ; systematic_id "SPAC9.02c" ; colour "7" ; GO "GO:0004059; aralkylamine N-acetyltransferase activity
GO:0004145; diamine N-acetyltransferase activity
GO:0006595; polyamine metabolism
GO:0006325; establishment and/or maintenance of chromatin architecture" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR071C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC9.02c" ; product "polyamine N-acetyltransferase (predicted)" ; EC_number "2.3.1.87" ;
chromosome1 GeneDB CDS 1457143 1457541 . - . mRNA SPAC9.02c ; colour "7" ;
chromosome1 GeneDB CDS 1457639 1457737 . - . mRNA SPAC9.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 1457542 1457560 . - . misc_feature unknown_1247 ; colour "6" ; note "ttaactaaacgctcaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1457633 1457638 . - . misc_feature unknown_1248 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1457736 1457895 . - . mRNA SPAC9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1458445 1458728 . - . mRNA SPAC9.03c ; ID "SPAC9.03c" ; db_xref "SPD:34/34C06" ; systematic_id "SPAC9.03c" ; note "mRNA from AU009464" ;
chromosome1 GeneDB CDS_parts 1458729 1465259 . - . mRNA SPAC9.03c ; systematic_id "SPAC9.03c" ; colour "2" ; db_xref "SPD:34/34C06" ; Alias "brr2" ; synonym "spp41" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YER172C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0004004; ATP-dependent RNA helicase activity
GO:0005682; snRNP U5
GO:0000393; spliceosomal conformational changes to generate catalytic conformation
GO:0005681; spliceosome complex" ; primary_name "brr2" ; product "U5 snRNP complex subunit Brr2 (predicted)" ;
chromosome1 GeneDB CDS 1458729 1465259 . - . mRNA SPAC9.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 1465327 1470252 . + . misc_feature Tf2-1 ; db_xref "SO:0000186" ; systematic_id "Tf2-1" ; note "LTR-retrotransposon" ;
chromosome1 GeneDB LTR 1465332 1465680 . + . LTR unknown_1249 ; note "Tf2-type LTR" ;
chromosome1 GeneDB CDS_parts 1465847 1469848 . + . mRNA SPAC9.04 ; Alias "Tf2-1" ; systematic_id "SPAC9.04" ; colour "4" ; controlled_curation "term=tf2-type transposon; date=19700101" ; GO "GO:0005634; nucleus" ; gene "Tf2-1 ||| SPAC9.04" ; primary_name "Tf2-1" ; product "retrotransposable element" ;
chromosome1 GeneDB CDS 1465847 1469848 . + . mRNA SPAC9.04 ; colour "4" ;
chromosome1 GeneDB LTR 1469899 1470247 . + . LTR unknown_1250 ; note "Tf2-type LTR" ;
chromosome1 GeneDB 5'-UTR 1470879 1471059 . + . mRNA SPAC9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1471060 1473665 . + . mRNA SPAC9.05 ; systematic_id "SPAC9.05" ; colour "2" ; gene "SPAC9.05 ||| fml1" ; Alias "fml1" ; db_xref "SPD:38/38F02" ; GO "GO:0071821; FANCM-MHF complex
GO:0005634; nucleus
GO:0043140; ATP-dependent 3' to 5' DNA helicase activity
GO:0003690; double-stranded DNA binding
GO:0009378; four-way junction helicase activity
GO:0006281; DNA repair
GO:0033567; DNA replication, Okazaki fragment processing
GO:2000042; negative regulation of double-strand break repair via homologous recombination
; positive regulation of Rad51-dependent gene conversion at stalled replication forks
GO:0031297; replication fork processing
GO:0071932; replication fork reversal
GO:0000732; strand displacement" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YIR002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human FANCM ortholog; db_xref=PMID:20347432; date=20100702 ||| term=disease associated, Fanconi anemia; db_xref=PMID:20347432; date=20100702 ||| term=phenotype, sensitive to MMS; qualifier=deletion; db_xref=PMID:18851838; date=20100712 ||| term=phenotype, sensitive to cisplatin; qualifier=deletion; db_xref=PMID:18851838; date=20100712 ||| term=phenotype, sensitive to DNA damaging agents; qualifier=deletion; db_xref=PMID:18851838; date=20100712" ; primary_name "fml1" ; product "ATP-dependent 3' to 5' DNA helicase, FANCM ortholog Fml1" ;
chromosome1 GeneDB CDS 1471060 1472508 . + . mRNA SPAC9.05 ; colour "2" ;
chromosome1 GeneDB CDS 1472554 1473383 . + . mRNA SPAC9.05 ; colour "2" ;
chromosome1 GeneDB CDS 1473440 1473665 . + . mRNA SPAC9.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 1472509 1472514 . + . misc_feature unknown_1251 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 1472509 1472553 . + . intron SPAC9.05 ; Alias "mfh1" ; db_xref "SPD:38/38F02" ; systematic_id "SPAC9.05" ; gene "mfh1 ||| SPAC9.05 ||| fml1" ; primary_name "mfh1" ; note "confirmed by pers. comm. Anke Schurer" ;
chromosome1 GeneDB misc_feature 1472543 1472553 . + . misc_feature unknown_1252 ; colour "6" ; note "ctaatctctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1473384 1473389 . + . misc_feature unknown_1253 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1473384 1473439 . + . intron SPAC9.05 ; Alias "mfh1" ; db_xref "SPD:38/38F02" ; systematic_id "SPAC9.05" ; gene "mfh1 ||| SPAC9.05 ||| fml1" ; primary_name "mfh1" ; note "confirmed by pers. comm. Anke Schurer" ;
chromosome1 GeneDB misc_feature 1473429 1473439 . + . misc_feature unknown_1254 ; colour "6" ; note "ttaacataag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1473666 1473684 . + . mRNA SPAC9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9.05" ; systematic_id "SPAC9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1473692 1474539 . - . mRNA SPAC9.06c ; db_xref "SPD:11/11A08" ; systematic_id "SPAC9.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0046570; methylthioribulose-1-phosphate dehydratase activity
GO:0019509; L-methionine salvage from methylthioadenosine" ; gene "SPAC9.06c" ; product "5'-methylthioribulose-1-phosphate dehydratase, adducin (predicted)" ;
chromosome1 GeneDB CDS 1473692 1473885 . - . mRNA SPAC9.06c ; colour "7" ;
chromosome1 GeneDB CDS 1473939 1474105 . - . mRNA SPAC9.06c ; colour "7" ;
chromosome1 GeneDB CDS 1474153 1474212 . - . mRNA SPAC9.06c ; colour "7" ;
chromosome1 GeneDB CDS 1474264 1474341 . - . mRNA SPAC9.06c ; colour "7" ;
chromosome1 GeneDB CDS 1474381 1474404 . - . mRNA SPAC9.06c ; colour "7" ;
chromosome1 GeneDB CDS 1474460 1474539 . - . mRNA SPAC9.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 1473886 1473897 . - . misc_feature unknown_1255 ; colour "6" ; note "ctgattatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1473933 1473938 . - . misc_feature unknown_1256 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1474106 1474120 . - . misc_feature unknown_1257 ; colour "6" ; note "ttaacacatcaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1474147 1474152 . - . misc_feature unknown_1258 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1474213 1474228 . - . misc_feature unknown_1259 ; colour "6" ; note "ctaaccttttatacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1474258 1474263 . - . misc_feature unknown_1260 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1474342 1474352 . - . misc_feature unknown_1261 ; colour "6" ; note "ttaacatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1474454 1474459 . - . misc_feature unknown_1262 ; colour "6" ; note "gtagcg, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 1474765 1474908 . - . mRNA SPAC9.07c ; ID "SPAC9.07c" ; db_xref "SPD:34/34E01" ; systematic_id "SPAC9.07c" ; gene "SPAC9.07c" ; note "mRNA from AU008944" ;
chromosome1 GeneDB CDS_parts 1474909 1476107 . - . mRNA SPAC9.07c ; db_xref "SPD:34/34E01" ; systematic_id "SPAC9.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL036C; date=19700101 ||| term=GTP1/OBG family; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005525; GTP binding
GO:0005737; cytoplasm
GO:0003924; GTPase activity
GO:0007264; small GTPase mediated signal transduction" ; gene "SPAC9.07c" ; product "GTPase Rbg1 (predicted)" ;
chromosome1 GeneDB CDS 1474909 1475049 . - . mRNA SPAC9.07c ; colour "7" ;
chromosome1 GeneDB CDS 1475100 1475899 . - . mRNA SPAC9.07c ; colour "7" ;
chromosome1 GeneDB CDS 1475948 1476107 . - . mRNA SPAC9.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 1475050 1475062 . - . misc_feature unknown_1263 ; colour "6" ; note "ctaacttctttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1475050 1475099 . - . intron SPAC9.07c ; db_xref "SPD:34/34E01" ; systematic_id "SPAC9.07c" ; gene "SPAC9.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1475094 1475099 . - . misc_feature unknown_1264 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1475900 1475913 . - . misc_feature unknown_1265 ; colour "6" ; note "ctaatctttcttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1475900 1475947 . - . intron SPAC9.07c ; db_xref "SPD:34/34E01" ; systematic_id "SPAC9.07c" ; gene "SPAC9.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1475942 1475947 . - . misc_feature unknown_1266 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1476108 1476147 . - . mRNA SPAC9.07c ; ID "SPAC9.07c" ; systematic_id "SPAC9.07c" ; gene "SPAC9.07c" ; note "mRNA from SPD135" ;
chromosome1 GeneDB 3'-UTR 1476928 1477213 . - . mRNA SPAC9.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9.08c" ; systematic_id "SPAC9.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1477214 1478062 . - . mRNA SPAC9.08c ; db_xref "SPD:11/11A10" ; systematic_id "SPAC9.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0016229; steroid dehydrogenase activity
GO:0008202; ergosterol metabolic process" ; gene "SPAC9.08c" ; product "steroid reductase (predicted)" ;
chromosome1 GeneDB CDS 1477214 1478062 . - . mRNA SPAC9.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1478061 1478358 . - . mRNA SPAC9.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1478412 1478626 . + . mRNA SPAC9.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1478627 1480921 . + . mRNA SPAC9.09 ; systematic_id "SPAC9.09" ; colour "2" ; db_xref "SPD:28/28C05" ; Alias "met26" ; controlled_curation "term=orthologous to S. cerevisiae YER091C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=misc, homocysteine accumulation causes a defect in purine biosynthesis; db_xref=PMID:16436428; cv=misc; date=20100217 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009086; methionine biosynthetic process
GO:0003871; 5-methyltetrahydropteroyltriglutamate- ho mocysteineS-methyltra nsferaseactivity
GO:0005737; cytoplasm
GO:0046084; adenine biosynthesis
GO:0044281; small molecule metabolic process" ; primary_name "met26" ; product "homocysteine methyltransferase Met26" ; EC_number "2.1.1.14" ;
chromosome1 GeneDB CDS 1478627 1480921 . + . mRNA SPAC9.09 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1480922 1481172 . + . mRNA SPAC9.09 ; ID "SPAC9.09" ; db_xref "SPD:28/28C05" ; systematic_id "SPAC9.09" ; note "mRNA from AU012703" ;
chromosome1 GeneDB misc_RNA 1481491 1481827 . + . misc_RNA SPNCRNA.171 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.171" ; synonym "SPNG254" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 1482480 1482833 . + . mRNA SPAC9.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1482834 1484609 . + . mRNA SPAC9.10 ; systematic_id "SPAC9.10" ; colour "2" ; gene "SPAC9.10 ||| thi9" ; note "the functionally complementing transporters are not orthologous" ; Alias "thi9" ; db_xref "SPD:36/36C04" ; GO "GO:0005886; plasma membrane
GO:0015234; high-affinity thiamine:hydrogen ion symporter activity
GO:0015234; thiamin transmembrane transporter activity
GO:0071934; thiamin transmembrane transport
GO:0071934; thiamin transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "thi9" ; product "thiamine transporter Thi9" ;
chromosome1 GeneDB CDS 1482834 1484609 . + . mRNA SPAC9.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1484610 1484752 . + . mRNA SPAC9.10 ; ID "SPAC9.10" ; db_xref "SPD:36/36C04" ; systematic_id "SPAC9.10" ; gene "SPAC9.10 ||| thi9" ; note "mRNA from AU012026" ;
chromosome1 GeneDB tRNA 1484979 1485061 . - . tRNA SPATRNAMET.02 ; systematic_id "SPATRNAMET.02" ; GO "GO:0005737; cytoplasm
GO:0006412; translation
GO:0033425; CAT codon-amino acid adaptor activity" ; gene "SPATRNAMET.02" ; product "tRNA Methionine" ; note "tRNA Met anticodon CAT, Cove score 54.77" ;
chromosome1 GeneDB intron 1485015 1485023 . - . intron SPATRNAMET.02 ; systematic_id "SPATRNAMET.02" ; note "intron tRNA Met anticodon CAT" ;
chromosome1 GeneDB 5'-UTR 1485616 1485817 . + . mRNA SPAC9.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1485818 1486862 . + . mRNA SPAC9.11 ; db_xref "SPD:15/15H04" ; systematic_id "SPAC9.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC9.11" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1485818 1485887 . + . mRNA SPAC9.11 ; colour "8" ;
chromosome1 GeneDB CDS 1485946 1486862 . + . mRNA SPAC9.11 ; colour "8" ;
chromosome1 GeneDB misc_feature 1485888 1485893 . + . misc_feature unknown_1267 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1485927 1485945 . + . misc_feature unknown_1268 ; colour "6" ; note "ttaataaaataaaatacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1486881 1487130 . - . mRNA SPAC9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9.12c" ; systematic_id "SPAC9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1487131 1488055 . - . mRNA SPAC9.12c ; systematic_id "SPAC9.12c" ; colour "7" ; gene "atp12 ||| SPAC9.12c" ; Alias "atp12" ; db_xref "SPD:12/12H06" ; GO "GO:0005759; mitochondrial matrix
GO:0051082; unfolded protein binding
GO:0033615; mitochondrial proton-transporting ATP synthase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, ATPAF2 deficiency; date=20061010 ||| term=orthologous to S. cerevisiae YJL180C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp12" ; product "F1-ATPase chaperone Atp12 (predicted)" ;
chromosome1 GeneDB CDS 1487131 1487225 . - . mRNA SPAC9.12c ; colour "7" ;
chromosome1 GeneDB CDS 1487287 1488055 . - . mRNA SPAC9.12c ; colour "7" ;
chromosome1 GeneDB misc_feature 1487226 1487237 . - . misc_feature unknown_1269 ; colour "6" ; note "ctcacgaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1487281 1487286 . - . misc_feature unknown_1270 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1488054 1488203 . - . mRNA SPAC9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1488698 1488769 . - . mRNA SPAC9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9.13c" ; systematic_id "SPAC9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1488770 1489582 . - . mRNA SPAC9.13c ; systematic_id "SPAC9.13c" ; colour "2" ; gene "cwf16 ||| SPAC9.13c ||| SPAPJ735.01c" ; Alias "cwf16" ; db_xref "SPD:10/10D05" ; synonym "SPAPJ735.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL095W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005515; protein binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; primary_name "cwf16" ; product "splicing factor (predicted)" ;
chromosome1 GeneDB CDS 1488770 1489582 . - . mRNA SPAC9.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 1489179 1489297 . + . misc_feature unknown_1271 ; note "nominal overlap with cosmid c9 and PCR product pJ735" ;
chromosome1 GeneDB 5'-UTR 1489581 1489740 . - . mRNA SPAC9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1490129 1490740 . - . mRNA SPAC5D6.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC5D6.13" ; systematic_id "SPAC5D6.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1490741 1491754 . - . mRNA SPAC5D6.13 ; systematic_id "SPAC5D6.13" ; colour "7" ; gene "SPAPJ735.02c ||| SPAC5D6.13" ; Alias "SPAPJ735.02c" ; db_xref "SPD:43/43F11" ; synonym "SPAPJ735.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR372C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human GOLPH3 ortholog; date=20090817 ||| term=disease associated, cancer; date=20090817" ; GO "GO:0005794; Golgi apparatus
GO:0030968; endoplasmic reticulum unfolded protein response
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER" ; primary_name "SPAPJ735.02c" ; product "Golgi phosphoprotein 3 family (predicted)" ;
chromosome1 GeneDB CDS 1490741 1491754 . - . mRNA SPAC5D6.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 1490884 1491040 . + . misc_feature unknown_1272 ; note "nominal overlap with cosmid SPAC5D6 and PCR product pJ735" ;
chromosome1 GeneDB 5'-UTR 1491753 1492105 . - . mRNA SPAC5D6.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5D6.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1492325 1492879 . - . mRNA SPAC5D6.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC5D6.12" ; systematic_id "SPAC5D6.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1492880 1493824 . - . mRNA SPAC5D6.12 ; db_xref "SPD:13/13C05" ; systematic_id "SPAC5D6.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL044C; date=20090410 ||| term=species distribution, conserved in Fungi; date=20090410 ||| term=species distribution, conserved in Fungi only; date=20090410" ; GO "GO:0032543; mitochondrial translation
GO:0005739; mitochondrion" ; colour "7" ; gene "SPAC5D6.12" ; product "mitochondrial translation protein (predicted)" ;
chromosome1 GeneDB CDS 1492880 1493824 . - . mRNA SPAC5D6.12 ; colour "7" ;
chromosome1 GeneDB CDS_parts 1494670 1495077 . + . mRNA SPAC5D6.10c ; systematic_id "SPAC5D6.10c" ; colour "8" ; gene "SPAC5D6.10c ||| mug116" ; db_xref "SPD:03/03B07" ; Alias "mug116" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, ORF in compositionally biased region; cv=warning; date=20070104 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug116" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1494670 1495077 . + . mRNA SPAC5D6.10c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 1495270 1497146 . + . mRNA SPAC5D6.09c ; ID "SPAC5D6.09c" ; db_xref "PMID:18488015" ; systematic_id "SPAC5D6.09c" ; gene "SPAC5D6.09c ||| mug86" ; note "From Solexa transcript SPNG259 ||| This UTR seems to be specific for the meiotic transcript" ;
chromosome1 GeneDB CDS_parts 1497147 1498061 . + . mRNA SPAC5D6.09c ; systematic_id "SPAC5D6.09c" ; colour "7" ; gene "SPAC5D6.09c ||| mug86" ; Alias "mug86" ; db_xref "SPD:12/12F09" ; GO "GO:0005886; plasma membrane
GO:0015123; acetate transmembrane transporter activity
GO:0006847; plasma membrane acetate transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR010C and YNR002C and YDR384C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827" ; primary_name "mug86" ; product "acetate transmembrane transporter (predicted)" ;
chromosome1 GeneDB CDS 1497147 1498061 . + . mRNA SPAC5D6.09c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1498062 1498485 . + . mRNA SPAC5D6.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC5D6.09c" ; systematic_id "SPAC5D6.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1498925 1499184 . + . mRNA SPAC5D6.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5D6.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1499185 1499565 . + . mRNA SPAC5D6.08c ; systematic_id "SPAC5D6.08c" ; colour "2" ; gene "mes1 ||| SPAC5D6.08c" ; Alias "mes1" ; db_xref "SPD:02/02G08" ; GO "GO:0007067; mitosis
GO:0005515; protein binding
GO:0051442; negative regulation of ubiquitin ligase activity during meiotic cell cycle
GO:0051442; negative regulation of ubiquitin ligase activity during meiotic cell cycle
GO:0007138; meiotic anaphase II
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:8082199; cv=gene_ex; date=20060106 ||| term=gene expression, meiosis- specific splicing; qualifier=5'_UTR dependent; db_xref=PMID:11459187; date=20060106 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mes1" ; product "meiosis II protein Mes1" ;
chromosome1 GeneDB CDS 1499185 1499358 . + . mRNA SPAC5D6.08c ; colour "2" ;
chromosome1 GeneDB CDS 1499434 1499565 . + . mRNA SPAC5D6.08c ; colour "2" ;
chromosome1 GeneDB misc_feature 1499359 1499364 . + . misc_feature unknown_1273 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1499416 1499433 . + . misc_feature unknown_1274 ; colour "6" ; note "ctaacattttatttacag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB 3'-UTR 1499566 1500029 . + . mRNA SPAC5D6.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC5D6.08c" ; systematic_id "SPAC5D6.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1500906 1500924 . + . mRNA SPAC5D6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5D6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1500925 1502412 . + . mRNA SPAC5D6.07c ; systematic_id "SPAC5D6.07c" ; colour "2" ; gene "SPAC5D6.07c ||| pxa1" ; Alias "pxa1" ; db_xref "SPD:24/24A03" ; GO "GO:0005768; endosome
GO:0031303; integral to endosome membrane
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0042147; retrograde transport, endosome to Golgi
GO:0007033; vacuole organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18256467; date=20080211 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; evidence=TAS; db_xref=PMID:18256467; date=20080211 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pxa1" ; product "PXA domain protein Pxa1" ;
chromosome1 GeneDB CDS 1500925 1502412 . + . mRNA SPAC5D6.07c ; colour "2" ;
chromosome1 GeneDB CDS_parts 1502909 1503587 . + . mRNA SPAC5D6.06c ; systematic_id "SPAC5D6.06c" ; colour "7" ; gene "SPAC5D6.06c" ; Alias "alg14" ; db_xref "SPD:07/07H02" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0004577; N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR070C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "alg14" ; product "UDP-GlcNAc transferase associated protein Alg14 (predicted)" ;
chromosome1 GeneDB CDS 1502909 1503373 . + . mRNA SPAC5D6.06c ; colour "7" ;
chromosome1 GeneDB CDS 1503420 1503587 . + . mRNA SPAC5D6.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 1503374 1503379 . + . misc_feature unknown_1275 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1503410 1503419 . + . misc_feature unknown_1276 ; colour "6" ; note "ctaactgataatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 1503588 1503713 . + . mRNA SPAC5D6.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC5D6.06c" ; systematic_id "SPAC5D6.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1503822 1503906 . - . mRNA SPAC5D6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC5D6.05" ; systematic_id "SPAC5D6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1503907 1504738 . - . mRNA SPAC5D6.05 ; systematic_id "SPAC5D6.05" ; colour "2" ; gene "sep11 ||| pmc6 ||| SPAC5D6.05 ||| med18" ; Alias "sep11" ; db_xref "SPD:10/10G05" ; synonym "pmc6 ||| med18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:18310102; cv=phenotype; date=20100406 ||| term=phenotype, conjugation defects; cv=phenotype; evidence=IMP; db_xref=PMID:10392445; qualifier=required; date=20060612 ||| term=orthologous to S. cerevisiae YGR104C; date=19700101 ||| term=phenotype, septation defects; db_xref=PMID:18310102; cv=phenotype; date=20080729 ||| term=phenotype, colony morphology, flocculation; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032569; specific transcription from RNA polymerase II promoter" ; primary_name "sep11" ; product "mediator complex subunit Pmc6" ;
chromosome1 GeneDB CDS 1503907 1504174 . - . mRNA SPAC5D6.05 ; colour "2" ;
chromosome1 GeneDB CDS 1504228 1504350 . - . mRNA SPAC5D6.05 ; colour "2" ;
chromosome1 GeneDB CDS 1504404 1504509 . - . mRNA SPAC5D6.05 ; colour "2" ;
chromosome1 GeneDB CDS 1504612 1504738 . - . mRNA SPAC5D6.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 1504175 1504189 . - . misc_feature unknown_1277 ; colour "6" ; note "ttgatcccttcgcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1504175 1504227 . - . intron SPAC5D6.05 ; Alias "sep11" ; db_xref "SPD:10/10G05" ; systematic_id "SPAC5D6.05" ; primary_name "sep11" ; gene "sep11 ||| pmc6 ||| SPAC5D6.05 ||| med18" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1504222 1504227 . - . misc_feature unknown_1278 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1504351 1504362 . - . misc_feature unknown_1279 ; colour "6" ; note "ctaattagtcag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 1504351 1504403 . - . intron SPAC5D6.05 ; Alias "sep11" ; db_xref "SPD:10/10G05" ; systematic_id "SPAC5D6.05" ; primary_name "sep11" ; gene "sep11 ||| pmc6 ||| SPAC5D6.05 ||| med18" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1504398 1504403 . - . misc_feature unknown_1280 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1504510 1504526 . - . misc_feature unknown_1281 ; colour "6" ; note "ctaactttgaattgaag, splice branch and acceptor sequen ce" ;
chromosome1 GeneDB intron 1504510 1504611 . - . intron SPAC5D6.05 ; Alias "sep11" ; db_xref "SPD:10/10G05" ; systematic_id "SPAC5D6.05" ; primary_name "sep11" ; gene "sep11 ||| pmc6 ||| SPAC5D6.05 ||| med18" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1504606 1504611 . - . misc_feature unknown_1282 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1504739 1504864 . - . mRNA SPAC5D6.05 ; Alias "sep11" ; ID "SPAC5D6.05" ; systematic_id "SPAC5D6.05" ; primary_name "sep11" ; gene "sep11 ||| pmc6 ||| SPAC5D6.05 ||| med18" ; note "mRNA from AU014259" ;
chromosome1 GeneDB 3'-UTR 1505088 1505590 . - . mRNA SPAC5D6.04 ; ID "SPAC5D6.04" ; db_xref "SPD:45/45B12" ; systematic_id "SPAC5D6.04" ; gene "SPAC5D6.04" ; note "mRNA from AU013795" ;
chromosome1 GeneDB CDS_parts 1505591 1507171 . - . mRNA SPAC5D6.04 ; db_xref "SPD:45/45B12" ; systematic_id "SPAC5D6.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR287W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0055085; transmembrane transport
GO:0022857; transmembrane transporter activity
GO:0016021; integral to membrane" ; colour "7" ; gene "SPAC5D6.04" ; product "auxin family transmembrane transporter (predicted)" ;
chromosome1 GeneDB CDS 1505591 1506583 . - . mRNA SPAC5D6.04 ; colour "7" ;
chromosome1 GeneDB CDS 1506641 1506731 . - . mRNA SPAC5D6.04 ; colour "7" ;
chromosome1 GeneDB CDS 1506768 1506898 . - . mRNA SPAC5D6.04 ; colour "7" ;
chromosome1 GeneDB CDS 1507028 1507171 . - . mRNA SPAC5D6.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 1506584 1506595 . - . misc_feature unknown_1283 ; colour "6" ; note "ctaactctttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1506635 1506640 . - . misc_feature unknown_1284 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1506732 1506742 . - . misc_feature unknown_1285 ; colour "6" ; note "ctaactttcag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1506762 1506767 . - . misc_feature unknown_1286 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1506899 1506912 . - . misc_feature unknown_1287 ; colour "6" ; note "ctaactttacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1507022 1507027 . - . misc_feature unknown_1288 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1507170 1507562 . - . mRNA SPAC5D6.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5D6.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1509597 1510375 . + . mRNA SPAC5D6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5D6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1510376 1511278 . + . mRNA SPAC5D6.02c ; systematic_id "SPAC5D6.02c" ; colour "8" ; gene "SPAC5D6.02c ||| mug165" ; note "chromatin association inferred from composition, localization and low similarity to transcriptional regulators" ; Alias "mug165" ; db_xref "SPD:12/12D09" ; GO "GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug165" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1510376 1511278 . + . mRNA SPAC5D6.02c ; colour "8" ;
chromosome1 GeneDB 3'-UTR 1511592 1511796 . - . mRNA SPAC5D6.01 ; Alias "rps2202" ; ID "SPAC5D6.01" ; systematic_id "SPAC5D6.01" ; primary_name "rps2202" ; gene "rps2202 ||| rps22-2 ||| rps15a-2 ||| SPAC5D6.01" ; note "mRNA from spc00001" ;
chromosome1 GeneDB CDS_parts 1511797 1512189 . - . mRNA SPAC5D6.01 ; systematic_id "SPAC5D6.01" ; colour "7" ; gene "rps2202 ||| rps22-2 ||| rps15a-2 ||| SPAC5D6.01" ; Alias "rps2202" ; synonym "rps22-2 ||| rps15a-2" ; GO "GO:0022627; cytosolic small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL190C and YLR367W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps2202" ; product "40S ribosomal protein S15a (predicted)" ;
chromosome1 GeneDB CDS 1511797 1512189 . - . mRNA SPAC5D6.01 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1512188 1512345 . - . mRNA SPAC5D6.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC5D6.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 1512433 1512440 . - . promoter unknown_1289 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB promoter 1512446 1512455 . - . promoter unknown_1290 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB misc_RNA 1512457 1512674 . + . misc_RNA SPNCRNA.173 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.173" ; synonym "SPNG271" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| possibly the spliced UTR of SPAC5D6.01 (rps222)" ;
chromosome1 GeneDB misc_feature 1512703 1512735 . - . misc_feature unknown_1291 ; colour "3" ; note "nominal overlap with cosmid SPAC5D6 and cosmid SPAC57A7" ;
chromosome1 GeneDB CDS_parts 1512764 1514628 . - . mRNA SPAC57A7.13 ; db_xref "SPD:46/46A06" ; systematic_id "SPAC57A7.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=G-patch domain; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0008270; zinc ion binding
GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; gene "SPAC57A7.13" ; product "RNA-binding protein, involved in splicing (predicted)" ;
chromosome1 GeneDB CDS 1512764 1513366 . - . mRNA SPAC57A7.13 ; colour "7" ;
chromosome1 GeneDB CDS 1513409 1514014 . - . mRNA SPAC57A7.13 ; colour "7" ;
chromosome1 GeneDB CDS 1514086 1514316 . - . mRNA SPAC57A7.13 ; colour "7" ;
chromosome1 GeneDB CDS 1514371 1514628 . - . mRNA SPAC57A7.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 1513367 1513379 . - . misc_feature unknown_1292 ; colour "6" ; note "ctgatatgtatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1513403 1513408 . - . misc_feature unknown_1293 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1514015 1514030 . - . misc_feature unknown_1294 ; colour "6" ; note "ctaactgttggagtag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 1514080 1514085 . - . misc_feature unknown_1295 ; colour "6" ; note "gtaaac, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1514317 1514335 . - . misc_feature unknown_1296 ; colour "6" ; note "ctaacaaaaatgcgtgaag, splice branch and acceptor sequ ence" ;
chromosome1 GeneDB misc_feature 1514365 1514370 . - . misc_feature unknown_1297 ; colour "6" ; note "gtgtga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1514627 1514711 . - . mRNA SPAC57A7.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A7.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1514942 1515088 . - . mRNA SPAC57A7.12 ; ID "SPAC57A7.12" ; db_xref "SPD:46/46A01" ; systematic_id "SPAC57A7.12" ; gene "SPAC57A7.12" ; note "mRNA from SPD262" ;
chromosome1 GeneDB CDS_parts 1515089 1516914 . - . mRNA SPAC57A7.12 ; db_xref "SPD:46/46A01" ; systematic_id "SPAC57A7.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR064C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "7" ; GO "GO:0051082; unfolded protein binding
GO:0006412; protein biosynthesis
GO:0005737; cytoplasm
GO:0030433; ER-associated protein catabolic process" ; gene "SPAC57A7.12" ; product "heat shock protein Pdr13 (predicted)" ;
chromosome1 GeneDB CDS 1515089 1516663 . - . mRNA SPAC57A7.12 ; colour "7" ;
chromosome1 GeneDB CDS 1516789 1516914 . - . mRNA SPAC57A7.12 ; colour "7" ;
chromosome1 GeneDB misc_feature 1516664 1516679 . - . misc_feature unknown_1298 ; colour "6" ; note "ctaacaaatcaaacag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB intron 1516664 1516788 . - . intron SPAC57A7.12 ; db_xref "SPD:46/46A01" ; systematic_id "SPAC57A7.12" ; gene "SPAC57A7.12" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1516783 1516788 . - . misc_feature unknown_1299 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 1517241 1517348 . - . mRNA SPAC57A7.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC57A7.11" ; systematic_id "SPAC57A7.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1517349 1521290 . - . mRNA SPAC57A7.11 ; systematic_id "SPAC57A7.11" ; colour "2" ; gene "mip1 ||| SPAC57A7.11" ; Alias "mip1" ; db_xref "SPD:39/39D06" ; GO "GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0031137; regulation of conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion
GO:0005515; protein binding
GO:0031931; TORC 1 complex
GO:0031931; TORC 1 complex
GO:0031929; TOR signaling pathway" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR186C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10648609; date=20071228 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mip1" ; product "WD repeat protein, Raptor homolog Mip1" ;
chromosome1 GeneDB CDS 1517349 1521290 . - . mRNA SPAC57A7.11 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1521289 1521420 . - . mRNA SPAC57A7.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A7.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1521641 1521711 . + . mRNA SPAC57A7.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A7.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1521712 1524532 . + . mRNA SPAC57A7.10c ; systematic_id "SPAC57A7.10c" ; colour "7" ; gene "sec21 ||| SPAC57A7.10c" ; Alias "sec21" ; db_xref "SPD:29/29E05" ; GO "GO:0030126; COPI vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YNL287W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sec21" ; product "coatomer gamma subunit Sec21 (predicted)" ;
chromosome1 GeneDB CDS 1521712 1521742 . + . mRNA SPAC57A7.10c ; colour "7" ;
chromosome1 GeneDB CDS 1521787 1523837 . + . mRNA SPAC57A7.10c ; colour "7" ;
chromosome1 GeneDB CDS 1523897 1524532 . + . mRNA SPAC57A7.10c ; colour "7" ;
chromosome1 GeneDB misc_feature 1521743 1521748 . + . misc_feature unknown_1300 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1521777 1521786 . + . misc_feature unknown_1301 ; colour "6" ; note "ttaacaatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1523838 1523843 . + . misc_feature unknown_1302 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1523884 1523896 . + . misc_feature unknown_1303 ; colour "6" ; note "ctaatgcttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 1524533 1524778 . + . mRNA SPAC57A7.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC57A7.10c" ; systematic_id "SPAC57A7.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1525031 1526149 . - . mRNA SPAC57A7.09 ; db_xref "SPD:17/17F01" ; systematic_id "SPAC57A7.09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20070212 ||| term=zinc finger protein; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPAC57A7.09" ; product "human RNF family homolog" ; note "human r31343_1 has the same domain combiantion" ;
chromosome1 GeneDB CDS 1525031 1526149 . - . mRNA SPAC57A7.09 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 1526148 1526151 . - . mRNA SPAC57A7.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A7.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 1526345 1527075 . + . misc_RNA SPNCRNA.174 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.174" ; synonym "SPNG273" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB tRNA 1527088 1527181 . - . tRNA SPATRNALEU.01 ; systematic_id "SPATRNALEU.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033428; CAG codon-amino acid adaptor activity" ; gene "SPATRNALEU.01" ; product "tRNA Leucine" ; note "tRNA Leu anticodon CAG, Cove score 60.97" ;
chromosome1 GeneDB 3'-UTR 1527691 1527963 . - . mRNA SPAC57A7.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC57A7.08" ; systematic_id "SPAC57A7.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1527964 1529511 . - . mRNA SPAC57A7.08 ; systematic_id "SPAC57A7.08" ; colour "2" ; gene "pzh1 ||| SPAC57A7.08" ; Alias "pzh1" ; db_xref "SPD:25/25B01" ; obsolete_name "phz1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML016C and YDR436W and YPL179W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004722; protein serine/threonine phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0009992; cellular osmoregulation
GO:0030007; potassium ion homeostasis
GO:0043462; regulation of ATPase activity
GO:0071473; cellular response to cation stress
GO:0006883; sodium ion homeostasis
GO:0006417; regulation of translation" ; primary_name "pzh1" ; product "serine/threonine protein phosphatase Pzh1" ;
chromosome1 GeneDB CDS 1527964 1529511 . - . mRNA SPAC57A7.08 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1529510 1529780 . - . mRNA SPAC57A7.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A7.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1530055 1530188 . + . mRNA SPAC57A7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1530189 1531115 . + . mRNA SPAC57A7.07c ; db_xref "SPD:43/43F02" ; systematic_id "SPAC57A7.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL062C and YPL273W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0008898; homocysteine S-methyltransferase activity
GO:0000096; sulfur amino acid metabolism
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC57A7.07c" ; product "homocysteine methyltransferase (predicted)" ; EC_number "2.1.1.10" ;
chromosome1 GeneDB CDS 1530189 1531115 . + . mRNA SPAC57A7.07c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1531211 1531312 . - . mRNA SPAC57A7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC57A7.06" ; systematic_id "SPAC57A7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1531313 1534148 . - . mRNA SPAC57A7.06 ; db_xref "SPD:47/47C08" ; systematic_id "SPAC57A7.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex" ; gene "SPAC57A7.06" ; product "U3 snoRNP protein Utp14 (predicted)" ;
chromosome1 GeneDB CDS 1531313 1533838 . - . mRNA SPAC57A7.06 ; colour "7" ;
chromosome1 GeneDB CDS 1533885 1534148 . - . mRNA SPAC57A7.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 1533839 1533853 . - . misc_feature unknown_1304 ; colour "6" ; note "ctaacacatttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1533879 1533884 . - . misc_feature unknown_1305 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 1534588 1538601 . - . mRNA SPAC57A7.05 ; db_xref "SPD:39/39D11" ; systematic_id "SPAC57A7.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL231C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAC57A7.05" ; product "conserved protein" ;
chromosome1 GeneDB CDS 1534588 1538601 . - . mRNA SPAC57A7.05 ; colour "10" ;
chromosome1 GeneDB misc_feature 1538604 1542864 . - . misc_feature unknown_1306 ; note "low complexity region" ;
chromosome1 GeneDB misc_feature 1541232 1541707 . + . misc_feature unknown_1307 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG279 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 1542763 1542864 . + . mRNA SPAC57A7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC57A7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1542865 1544826 . + . mRNA SPAC57A7.04c ; systematic_id "SPAC57A7.04c" ; colour "2" ; gene "SPAC57A7.04c ||| pabp" ; note "pab1 used previously by SPAC227.07c" ; Alias "pabp" ; db_xref "SPD:27/27B02" ; obsolete_name "pab1" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008143; poly(A) binding
GO:0006406; mRNA export from nucleus
GO:0006446; regulation of translational initiation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12112233; date=19700101 ||| term=orthologous to S. cerevisiae YER165W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pabp" ; product "mRNA export shuttling protein" ;
chromosome1 GeneDB CDS 1542865 1544826 . + . mRNA SPAC57A7.04c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1544827 1545184 . + . mRNA SPAC57A7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC57A7.04c" ; systematic_id "SPAC57A7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1545348 1545813 . - . mRNA SPAC57A7.15c ; db_xref "PMID:18488015" ; systematic_id "SPAC57A7.15c" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "8" ; gene "SPAC57A7.15c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1545348 1545608 . - . mRNA SPAC57A7.15c ; colour "8" ;
chromosome1 GeneDB CDS 1545661 1545813 . - . mRNA SPAC57A7.15c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 1546282 1546503 . + . mRNA SPAC167.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC167.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1546504 1549695 . + . mRNA SPAC167.07c ; systematic_id "SPAC167.07c" ; colour "7" ; gene "SPAC57A7.03c ||| SPAC167.07c" ; Alias "SPAC57A7.03c" ; db_xref "SPD:48/48A01" ; synonym "SPAC57A7.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=IQ domain; date=20060726 ||| term=orthologous to S. cerevisiae YGL141W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008270; zinc ion binding" ; primary_name "SPAC57A7.03c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB CDS 1546504 1549487 . + . mRNA SPAC167.07c ; colour "7" ;
chromosome1 GeneDB CDS 1549546 1549602 . + . mRNA SPAC167.07c ; colour "7" ;
chromosome1 GeneDB CDS 1549647 1549695 . + . mRNA SPAC167.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 1548863 1551803 . - . misc_feature unknown_1308 ; note "nominal overlap with cosmid SPAC167 and cosmid SPAC57A7" ;
chromosome1 GeneDB misc_feature 1549488 1549493 . + . misc_feature unknown_1309 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1549528 1549545 . + . misc_feature unknown_1310 ; colour "6" ; note "ctaacgtatttattatag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB misc_feature 1549603 1549608 . + . misc_feature unknown_1311 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1549632 1549646 . + . misc_feature unknown_1312 ; colour "6" ; note "ctaaccaatgtttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1549696 1549858 . + . mRNA SPAC167.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC167.07c" ; systematic_id "SPAC167.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1550076 1550132 . + . mRNA SPAC167.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC167.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1550133 1550498 . + . mRNA SPAC167.06c ; systematic_id "SPAC167.06c" ; colour "8" ; gene "SPAC57A7.02c ||| SPAC167.06c ||| mug143" ; Alias "mug143" ; db_xref "SPD:02/02E07" ; synonym "SPAC57A7.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug143" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1550133 1550498 . + . mRNA SPAC167.06c ; colour "8" ;
chromosome1 GeneDB 3'-UTR 1550499 1550683 . + . mRNA SPAC167.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC167.06c" ; systematic_id "SPAC167.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1551120 1551407 . - . mRNA SPAC167.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC167.05" ; systematic_id "SPAC167.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1551408 1553213 . - . mRNA SPAC167.05 ; systematic_id "SPAC167.05" ; colour "10" ; gene "SPAC57A7.01 ||| SPAC167.05" ; Alias "SPAC57A7.01" ; db_xref "SPD:36/36E04" ; synonym "SPAC57A7.01" ; GO "GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "SPAC57A7.01" ; product "Usp (universal stress protein) family protein, implicated in meiotic chromosome segregation" ;
chromosome1 GeneDB CDS 1551408 1553213 . - . mRNA SPAC167.05 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 1553212 1553266 . - . mRNA SPAC167.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC167.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1553651 1554000 . - . mRNA SPAC167.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC167.04" ; systematic_id "SPAC167.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1554001 1554791 . - . mRNA SPAC167.04 ; systematic_id "SPAC167.04" ; colour "7" ; gene "pam17 ||| SPAC167.04" ; Alias "pam17" ; db_xref "SPD:43/43C04" ; GO "GO:0001405; presequence translocase-associated import motor
GO:0030150; protein import into mitochondrial matrix" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR065C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "pam17" ; product "TIM23 translocase complex-associated motor subunit Pam17 (predicted)" ; reserved_name "pam17" ;
chromosome1 GeneDB CDS 1554001 1554072 . - . mRNA SPAC167.04 ; colour "7" ;
chromosome1 GeneDB CDS 1554135 1554166 . - . mRNA SPAC167.04 ; colour "7" ;
chromosome1 GeneDB CDS 1554214 1554292 . - . mRNA SPAC167.04 ; colour "7" ;
chromosome1 GeneDB CDS 1554381 1554791 . - . mRNA SPAC167.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 1554073 1554089 . - . misc_feature unknown_1313 ; colour "6" ; note "ctaacttttatgcaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1554129 1554134 . - . misc_feature unknown_1314 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1554167 1554181 . - . misc_feature unknown_1315 ; colour "6" ; note "ctaactcttaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1554208 1554213 . - . misc_feature unknown_1316 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1554293 1554304 . - . misc_feature unknown_1317 ; colour "6" ; note "ttaattttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1554375 1554380 . - . misc_feature unknown_1318 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1554790 1554807 . - . mRNA SPAC167.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC167.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1555026 1555133 . + . mRNA SPAC167.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC167.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1555134 1557083 . + . mRNA SPAC167.03c ; systematic_id "SPAC167.03c" ; colour "2" ; gene "snu66 ||| SPAC167.03c" ; Alias "snu66" ; db_xref "SPD:46/46B10" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005634; nucleus
GO:0005681; spliceosome complex
GO:0000481; maturation of 5S rRNA
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15620657; date=19700101 ||| term=orthologous to S. cerevisiae YOR308C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snu66" ; product "U4/U6 x U5 tri-snRNP complex subunit Snu66 (predicted)" ;
chromosome1 GeneDB CDS 1555134 1557083 . + . mRNA SPAC167.03c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1557084 1557115 . + . mRNA SPAC167.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC167.03c" ; systematic_id "SPAC167.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1557147 1558321 . - . mRNA SPAC167.02 ; systematic_id "SPAC167.02" ; colour "2" ; gene "ptb1 ||| SPAC167.02" ; Alias "ptb1" ; db_xref "SPD:18/18F04" ; GO "GO:0018344; protein geranylgeranylation
GO:0005968; Rab-protein geranylgeranyltransferase complex
GO:0004663; Rab-protein geranylgeranyltransferase activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR176C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ptb1" ; product "geranylgeranyltransferase II beta subunit Ptb1" ;
chromosome1 GeneDB CDS 1557147 1557410 . - . mRNA SPAC167.02 ; colour "2" ;
chromosome1 GeneDB CDS 1557456 1557589 . - . mRNA SPAC167.02 ; colour "2" ;
chromosome1 GeneDB CDS 1557628 1557843 . - . mRNA SPAC167.02 ; colour "2" ;
chromosome1 GeneDB CDS 1557898 1558014 . - . mRNA SPAC167.02 ; colour "2" ;
chromosome1 GeneDB CDS 1558070 1558220 . - . mRNA SPAC167.02 ; colour "2" ;
chromosome1 GeneDB CDS 1558268 1558321 . - . mRNA SPAC167.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 1557411 1557423 . - . misc_feature unknown_1319 ; colour "6" ; note "ctaatagttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1557450 1557455 . - . misc_feature unknown_1320 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1557590 1557601 . - . misc_feature unknown_1321 ; colour "6" ; note "ttgaccctaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1557622 1557627 . - . misc_feature unknown_1322 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1557844 1557862 . - . misc_feature unknown_1323 ; colour "6" ; note "ctaattataaataattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1557892 1557897 . - . misc_feature unknown_1324 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1558015 1558029 . - . misc_feature unknown_1325 ; colour "6" ; note "ctaacaatgagttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1558064 1558069 . - . misc_feature unknown_1326 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1558221 1558231 . - . misc_feature unknown_1327 ; colour "6" ; note "cttacaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1558262 1558267 . - . misc_feature unknown_1328 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1558320 1558493 . - . mRNA SPAC167.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC167.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1558670 1559147 . + . mRNA SPAC167.09 ; db_xref "PMID:18488015" ; systematic_id "SPAC167.09" ; controlled_curation "term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "8" ; gene "SPAC167.09" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1558670 1558957 . + . mRNA SPAC167.09 ; colour "8" ;
chromosome1 GeneDB CDS 1559007 1559147 . + . mRNA SPAC167.09 ; colour "8" ;
chromosome1 GeneDB CDS_parts 1559466 1562734 . - . mRNA SPAC167.01 ; systematic_id "SPAC167.01" ; colour "2" ; gene "ppk4 ||| SPAC167.01 ||| ire1" ; Alias "ire1" ; db_xref "SPD:48/48B07" ; synonym "ppk4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=PQQ repeat; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR079C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005524; ATP binding
GO:0004521; endoribonuclease activity
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0030968; unfolded protein response
GO:0006916; anti-apoptosis" ; primary_name "ire1" ; product "serine/threonine protein kinase Ppk4/ sensor for unfolded proteins in the ER (predicted)" ;
chromosome1 GeneDB CDS 1559466 1559639 . - . mRNA SPAC167.01 ; colour "2" ;
chromosome1 GeneDB CDS 1559690 1562734 . - . mRNA SPAC167.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 1559640 1559656 . - . misc_feature unknown_1329 ; colour "6" ; note "ctaacttccttttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1559684 1559689 . - . misc_feature unknown_1330 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome1 GeneDB misc_RNA 1559881 1561967 . + . misc_RNA SPNCRNA.555 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.555" ; synonym "SPNG2AF18" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB 5'-UTR 1562733 1563472 . - . mRNA SPAC167.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC167.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB rRNA 1563479 1563593 . + . rRNA SPRRNA.53 ; db_xref "PMID:21270388" ; synonym "SPRRNA.56 ||| new26" ; systematic_id "SPRRNA.53" ; product "8S rRNA (predicted)" ; note "via Ensembl pipeline" ;
chromosome1 GeneDB LTR 1563817 1564165 . - . LTR unknown_1331 ; note "tf2 type LTR associated with full length tf2" ;
chromosome1 GeneDB misc_feature 1563817 1567862 . - . misc_feature Tf2-2 ; db_xref "SO:0000186" ; systematic_id "Tf2-2" ; note "LTR-retrotransposon" ;
chromosome1 GeneDB CDS_parts 1564216 1568217 . - . mRNA SPAC167.08 ; Alias "Tf2-2" ; systematic_id "SPAC167.08" ; synonym "SPAC1705.01c" ; colour "4" ; controlled_curation "term=tf2-type transposon; date=19700101" ; gene "SPAC167.08 ||| Tf2-2" ; primary_name "Tf2-2" ; product "retrotransposable element" ;
chromosome1 GeneDB CDS 1564216 1568217 . - . mRNA SPAC167.08 ; colour "4" ;
chromosome1 GeneDB misc_feature 1567766 1567862 . + . misc_feature unknown_1332 ; note "nominal overlap with cosmid SPAC1705 and cosmid SPAC167" ;
chromosome1 GeneDB LTR 1568384 1568732 . - . LTR unknown_1333 ; note "Tf2-type LTR" ;
chromosome1 GeneDB 5'-UTR 1568838 1568862 . + . mRNA SPAC1705.02 ; ID "SPAC1705.02" ; systematic_id "SPAC1705.02" ; gene "SPAC1705.02" ; note "mRNA from AU007764" ;
chromosome1 GeneDB CDS_parts 1568863 1569303 . + . mRNA SPAC1705.02 ; db_xref "SPD:42/42B02" ; obsolete_name "SPAC1F2.02c" ; systematic_id "SPAC1705.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL085C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SERF1A ortholog; date=20100718" ; colour "10" ; gene "SPAC1705.02" ; product "human 4F5S homolog" ;
chromosome1 GeneDB CDS 1568863 1568869 . + . mRNA SPAC1705.02 ; colour "10" ;
chromosome1 GeneDB CDS 1569064 1569160 . + . mRNA SPAC1705.02 ; colour "10" ;
chromosome1 GeneDB CDS 1569216 1569303 . + . mRNA SPAC1705.02 ; colour "10" ;
chromosome1 GeneDB misc_feature 1568870 1568875 . + . misc_feature unknown_1334 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1568870 1569063 . + . intron SPAC1705.02 ; db_xref "SPD:42/42B02" ; systematic_id "SPAC1705.02" ; gene "SPAC1705.02" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1569051 1569063 . + . misc_feature unknown_1335 ; colour "6" ; note "ctaatgttactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1569161 1569166 . + . misc_feature unknown_1336 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1569161 1569215 . + . intron SPAC1705.02 ; db_xref "SPD:42/42B02" ; systematic_id "SPAC1705.02" ; gene "SPAC1705.02" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1569203 1569215 . + . misc_feature unknown_1337 ; colour "6" ; note "ctaatattttaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1569304 1569449 . + . mRNA SPAC1705.02 ; ID "SPAC1705.02" ; db_xref "SPD:42/42B02" ; systematic_id "SPAC1705.02" ; gene "SPAC1705.02" ; note "mRNA from AU007763" ;
chromosome1 GeneDB 3'-UTR 1569613 1569994 . - . mRNA SPAC1705.03c ; Alias "ecm33" ; ID "SPAC1705.03c" ; db_xref "SPD:20/20C02" ; systematic_id "SPAC1705.03c" ; primary_name "ecm33" ; gene "ecm33 ||| SPAC1705.03c ||| SPAC23H4.19" ; note "mRNA from AU010387" ;
chromosome1 GeneDB CDS_parts 1569995 1571260 . - . mRNA SPAC1705.03c ; systematic_id "SPAC1705.03c" ; colour "2" ; gene "ecm33 ||| SPAC1705.03c ||| SPAC23H4.19" ; Alias "ecm33" ; db_xref "SPD:20/20C02" ; obsolete_name "SPAC1F2.01" ; synonym "SPAC23H4.19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR078W and YDR055W and YDR522C and YCL048W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, GPI attachment site; cv=pt_mod; evidence=IDA; db_xref=PMID:17230583; date=20100104 ||| term=gene expression, promoter contains CRE element; db_xref=PMID:20032302; date=20100624 ||| term=gene expression, promoter contains RLM1 element; db_xref=PMID:20032302; date=20100624 ||| term=target of Atf1; db_xref=PMID:20032302; date=20100624 ||| term=target of Mbx1; db_xref=PMID:20032302; date=20100624 ||| term=target of Pmk1; qualifier=indirect; db_xref=PMID:20032302; date=20100624 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:20032302; date=20100624 ||| term=gene expression, transcriptionally regulated by Mbx1; db_xref=PMID:20032302; date=20100624 ||| term=gene expression, transcriptionally regulated by Pmk1; qualifier=indirect; db_xref=PMID:20032302; date=20100624 ||| term=pathway, Mkh1-Pek1-Spm1 MAP kinase; db_xref=PMID:20032302; date=20100624" ; GO "GO:0031505; fungal-type cell wall organization
GO:0009897; external side of plasma membrane
GO:0009277; fungal-type cell wall
GO:0009986; cell surface
GO:0035556; intracellular signal transduction
GO:0055074; calcium homeostasis" ; primary_name "ecm33" ; product "cell wall protein Ecm33" ;
chromosome1 GeneDB CDS 1569995 1571260 . - . mRNA SPAC1705.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 1570023 1570123 . + . misc_feature unknown_1338 ; note "nominal overlap with cosmid SPAC1705 and cosmid SPAC23H4" ;
chromosome1 GeneDB misc_feature 1570023 1570165 . - . misc_feature unknown_1339 ; note "nominal overlap with cosmid SPAC1F2, EM:Z98976 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 1571261 1571567 . - . mRNA SPAC1705.03c ; Alias "ecm33" ; ID "SPAC1705.03c" ; systematic_id "SPAC1705.03c" ; primary_name "ecm33" ; gene "ecm33 ||| SPAC1705.03c ||| SPAC23H4.19" ; note "mRNA from AU009794" ;
chromosome1 GeneDB misc_RNA 1572010 1572308 . - . misc_RNA SPNCRNA.80 ; db_xref "EMBL:AU012652" ; systematic_id "SPNCRNA.80" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU012652; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU012652; date=20050412" ; gene "SPNCRNA.80" ; product "non-coding RNA (predicted)" ; note "mRNA from AU012652 1 299 ||| not associated with an ORF" ;
chromosome1 GeneDB misc_RNA 1573772 1574466 . + . misc_RNA SPNCRNA.175 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.175" ; synonym "SPNG282" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_RNA 1574846 1575103 . - . misc_RNA SPNCRNA.81 ; systematic_id "SPNCRNA.81" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.81" ; product "non-coding RNA (predicted)" ; note "possible/similarity" ;
chromosome1 GeneDB 5'-UTR 1575375 1575409 . + . mRNA SPAC23H4.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1575410 1576028 . + . mRNA SPAC23H4.18c ; systematic_id "SPAC23H4.18c" ; colour "2" ; gene "rbx1 ||| pip1 ||| SPAC23H4.18c" ; Alias "rbx1" ; db_xref "SPD:42/42E02" ; synonym "pip1" ; GO "GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0031465; Cul4B-RING ubiquitin ligase complex
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YOL133W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pop- Interacting Protein; cv=name_description; date=20090729 ||| term=name description, RING-BoX protein; cv=name_description; date=20090729" ; primary_name "rbx1" ; product "RING-box protein 1" ;
chromosome1 GeneDB CDS 1575410 1575484 . + . mRNA SPAC23H4.18c ; colour "2" ;
chromosome1 GeneDB CDS 1575673 1575822 . + . mRNA SPAC23H4.18c ; colour "2" ;
chromosome1 GeneDB CDS 1575886 1575976 . + . mRNA SPAC23H4.18c ; colour "2" ;
chromosome1 GeneDB CDS 1576021 1576028 . + . mRNA SPAC23H4.18c ; colour "2" ;
chromosome1 GeneDB misc_feature 1575485 1575490 . + . misc_feature unknown_1340 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB intron 1575485 1575672 . + . intron SPAC23H4.18c ; Alias "rbx1" ; db_xref "SPD:42/42E02" ; systematic_id "SPAC23H4.18c" ; primary_name "rbx1" ; gene "rbx1 ||| pip1 ||| SPAC23H4.18c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1575657 1575672 . + . misc_feature unknown_1341 ; colour "6" ; note "cttaccttcaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1575823 1575828 . + . misc_feature unknown_1342 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1575823 1575885 . + . intron SPAC23H4.18c ; Alias "rbx1" ; db_xref "SPD:42/42E02" ; systematic_id "SPAC23H4.18c" ; primary_name "rbx1" ; gene "rbx1 ||| pip1 ||| SPAC23H4.18c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1575870 1575885 . + . misc_feature unknown_1343 ; colour "6" ; note "ttaacaaatacaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1575977 1575982 . + . misc_feature unknown_1344 ; colour "6" ; note "gtaggg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1576006 1576020 . + . misc_feature unknown_1345 ; colour "6" ; note "ctaactttatctcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1576029 1576200 . + . mRNA SPAC23H4.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H4.18c" ; systematic_id "SPAC23H4.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1576697 1576853 . + . mRNA SPAC23H4.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1576854 1577912 . + . mRNA SPAC23H4.17c ; systematic_id "SPAC23H4.17c" ; colour "2" ; db_xref "SPD:16/16C01" ; Alias "srb10" ; synonym "prk1 ||| cdk8" ; GO "GO:0016592; Srb-mediator complex
GO:0005524; ATP binding
GO:0004693; cyclin-dependent protein kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0032569; specific transcription from RNA polymerase II promoter
; RNA polymerase II CTD terminal phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL042C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=gene expression, transcriptionally represses genes involved in cell surface adhesion; db_xref=PMID:18310102; cv=gene_ex; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "srb10" ; product "cyclin-dependent protein Srb mediator subunit kinase Srb10" ;
chromosome1 GeneDB CDS 1576854 1577912 . + . mRNA SPAC23H4.17c ; colour "2" ;
chromosome1 GeneDB CDS_parts 1578314 1579540 . + . mRNA SPAC23H4.16c ; db_xref "SPD:19/19E05" ; systematic_id "SPAC23H4.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "8" ; gene "SPAC23H4.16c" ; product "sequence orphan" ; note "possibly broadly conserved (to human), possible conserved motif QAFCI at C term" ;
chromosome1 GeneDB CDS 1578314 1578445 . + . mRNA SPAC23H4.16c ; colour "8" ;
chromosome1 GeneDB CDS 1578492 1578656 . + . mRNA SPAC23H4.16c ; colour "8" ;
chromosome1 GeneDB CDS 1578793 1578984 . + . mRNA SPAC23H4.16c ; colour "8" ;
chromosome1 GeneDB CDS 1579043 1579540 . + . mRNA SPAC23H4.16c ; colour "8" ;
chromosome1 GeneDB misc_feature 1578446 1578451 . + . misc_feature unknown_1346 ; colour "6" ; note "gtacta, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1578478 1578491 . + . misc_feature unknown_1347 ; colour "6" ; note "ctaacttgccatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1578657 1578662 . + . misc_feature unknown_1348 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1578779 1578792 . + . misc_feature unknown_1349 ; colour "6" ; note "ctaactatgcatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1578985 1578990 . + . misc_feature unknown_1350 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1579026 1579042 . + . misc_feature unknown_1351 ; colour "6" ; note "ctgacatttcgctttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1579541 1579610 . + . mRNA SPAC23H4.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H4.16c" ; systematic_id "SPAC23H4.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1579722 1579755 . - . mRNA SPAC23H4.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H4.15" ; systematic_id "SPAC23H4.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1579756 1582107 . - . mRNA SPAC23H4.15 ; db_xref "SPD:28/28D10" ; systematic_id "SPAC23H4.15" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human TSR1 ortholog; date=20100902" ; colour "7" ; GO "GO:0043021; ribonucleoprotein binding
GO:0006364; rRNA processing
GO:0042254; ribosome biogenesis and assembly
GO:0005737; cytoplasm
GO:0005730; nucleolus" ; gene "SPAC23H4.15" ; product "ribosome biogenesis protein Tsr1 (predicted)" ;
chromosome1 GeneDB CDS 1579756 1582107 . - . mRNA SPAC23H4.15 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1582108 1582323 . - . mRNA SPAC23H4.15 ; ID "SPAC23H4.15" ; systematic_id "SPAC23H4.15" ; gene "SPAC23H4.15" ; note "mRNA from spc00354" ;
chromosome1 GeneDB CDS_parts 1582525 1585443 . - . mRNA SPAC23H4.14 ; systematic_id "SPAC23H4.14" ; colour "7" ; gene "vam6 ||| vps39 ||| SPAC23H4.14" ; Alias "vam6" ; db_xref "SPD:47/47D12" ; synonym "vps39" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030897; HOPS complex
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0042144; vacuole fusion, non-autophagic
GO:0048278; vesicle docking
GO:0000324; fungal-type vacuole
GO:0000329; vacuolar membrane" ; primary_name "vam6" ; product "guanyl-nucleotide exchange factor, HOPS complex subunit Vam6 (predicted)" ;
chromosome1 GeneDB CDS 1582525 1582597 . - . mRNA SPAC23H4.14 ; colour "7" ;
chromosome1 GeneDB CDS 1582657 1585045 . - . mRNA SPAC23H4.14 ; colour "7" ;
chromosome1 GeneDB CDS 1585092 1585196 . - . mRNA SPAC23H4.14 ; colour "7" ;
chromosome1 GeneDB CDS 1585248 1585325 . - . mRNA SPAC23H4.14 ; colour "7" ;
chromosome1 GeneDB CDS 1585371 1585443 . - . mRNA SPAC23H4.14 ; colour "7" ;
chromosome1 GeneDB misc_feature 1582598 1582616 . - . misc_feature unknown_1352 ; colour "6" ; note "ctaaccttcatttaacaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1582651 1582656 . - . misc_feature unknown_1353 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1585046 1585058 . - . misc_feature unknown_1354 ; colour "6" ; note "ttaacttttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1585086 1585091 . - . misc_feature unknown_1355 ; colour "6" ; note "gtaaac, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1585197 1585216 . - . misc_feature unknown_1356 ; colour "6" ; note "ttaataaatcttataaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1585242 1585247 . - . misc_feature unknown_1357 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1585326 1585339 . - . misc_feature unknown_1358 ; colour "6" ; note "ctaatggataatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1585365 1585370 . - . misc_feature unknown_1359 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1585442 1585553 . - . mRNA SPAC23H4.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1586013 1586473 . - . mRNA SPAC23H4.21 ; db_xref "PMID:18488015" ; systematic_id "SPAC23H4.21" ; colour "10" ; controlled_curation "term=orthologous to S. cerevisiae YLR407W; date=20080102 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPAC23H4.21" ; product "conserved protein" ;
chromosome1 GeneDB CDS 1586013 1586096 . - . mRNA SPAC23H4.21 ; colour "10" ;
chromosome1 GeneDB CDS 1586189 1586473 . - . mRNA SPAC23H4.21 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 1586431 1586692 . + . mRNA SPAC23H4.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1586693 1587327 . + . mRNA SPAC23H4.13c ; db_xref "SPD:42/42F02" ; systematic_id "SPAC23H4.13c" ; controlled_curation "term=species distribution, sequence orphan, uncharacterised; date=20091213 ||| term=species distribution, no apparent orthologs; date=20091213 ||| term=species distribution, identified in S. pombe only; date=20091213 ||| term=warning, previously annotated as dubious; cv=warning; date=20091213" ; colour "8" ; gene "SPAC23H4.13c" ; product "sequence orphan" ; note "nonconsensus branch" ;
chromosome1 GeneDB CDS 1586693 1586863 . + . mRNA SPAC23H4.13c ; colour "8" ;
chromosome1 GeneDB CDS 1586944 1587327 . + . mRNA SPAC23H4.13c ; colour "8" ;
chromosome1 GeneDB misc_feature 1586864 1586869 . + . misc_feature unknown_1360 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1586929 1586943 . + . misc_feature unknown_1361 ; colour "6" ; note "ctcaccaaattctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1587146 1587488 . - . mRNA SPAC23H4.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H4.12" ; systematic_id "SPAC23H4.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1587328 1587530 . + . mRNA SPAC23H4.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H4.13c" ; systematic_id "SPAC23H4.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1587489 1588551 . - . mRNA SPAC23H4.12 ; systematic_id "SPAC23H4.12" ; colour "2" ; gene "alp13 ||| SPAC23H4.12" ; Alias "alp13" ; db_xref "SPD:16/16C09" ; GO "GO:0032221; Clr6 histone deacetylase complex
GO:0032221; Clr6 histone deacetylase complex II'
GO:0035267; NuA4 histone acetyltransferase complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0030261; chromosome condensation
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0016575; histone deacetylation
GO:0016575; histone deacetylation
GO:0006974; response to DNA damage stimulus
GO:0016573; histone acetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=chromodomain protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; cv=misc; db_xref=PMID:19040720; date=20081230 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "alp13" ; product "MRG family Clr6 histone deacetylase complex subunit Alp13" ;
chromosome1 GeneDB CDS 1587489 1587573 . - . mRNA SPAC23H4.12 ; colour "2" ;
chromosome1 GeneDB CDS 1587623 1588551 . - . mRNA SPAC23H4.12 ; colour "2" ;
chromosome1 GeneDB misc_feature 1587574 1587589 . - . misc_feature unknown_1362 ; colour "6" ; note "ctaaccatttatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1587617 1587622 . - . misc_feature unknown_1363 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1588550 1588577 . - . mRNA SPAC23H4.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1588575 1588954 . + . mRNA SPAC23H4.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1588955 1589592 . + . mRNA SPAC23H4.11c ; systematic_id "SPAC23H4.11c" ; colour "2" ; gene "cnl2 ||| SPAC23H4.11c" ; Alias "cnl2" ; db_xref "SPD:07/07C12" ; GO "GO:0000776; kinetochore" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17035632; date=20070213 ||| term=orthologous to S. cerevisiae YLR315W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "cnl2" ; product "centromere localized protein Cnl2" ;
chromosome1 GeneDB CDS 1588955 1589391 . + . mRNA SPAC23H4.11c ; colour "2" ;
chromosome1 GeneDB CDS 1589463 1589592 . + . mRNA SPAC23H4.11c ; colour "2" ;
chromosome1 GeneDB misc_feature 1589392 1589397 . + . misc_feature unknown_1364 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1589445 1589462 . + . misc_feature unknown_1365 ; colour "6" ; note "ctaataatttctttctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1589593 1589622 . + . mRNA SPAC23H4.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H4.11c" ; systematic_id "SPAC23H4.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1589954 1590099 . + . mRNA SPAC23H4.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1590100 1591656 . + . mRNA SPAC23H4.10c ; systematic_id "SPAC23H4.10c" ; colour "2" ; gene "thi4 ||| SPAC23H4.10c" ; Alias "thi4" ; db_xref "SPD:45/45A09" ; GO "GO:0009228; thiamin biosynthesis
GO:0005737; cytoplasm
GO:0004417; hydroxyethylthiazole kinase activity
GO:0004789; thiamin-phosphate diphosphorylase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, bifunctional enzyme; cv=cat_act; date=20061113 ||| term=orthologous to S. cerevisiae YPL214C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "thi4" ; product "thiamine-phosphate dipyrophosphorylase/hydroxyethylthiazole kinase" ; EC_number "2.5.1.3 ||| 2.7.1.50" ;
chromosome1 GeneDB CDS 1590100 1591656 . + . mRNA SPAC23H4.10c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1591873 1591937 . - . mRNA SPAC23H4.09 ; Alias "cdb4" ; ID "SPAC23H4.09" ; db_xref "SPD:18/18B01" ; systematic_id "SPAC23H4.09" ; primary_name "cdb4" ; gene "cdb4 ||| SPAC23H4.09" ; note "mRNA from AU009763" ;
chromosome1 GeneDB CDS_parts 1591938 1593083 . - . mRNA SPAC23H4.09 ; systematic_id "SPAC23H4.09" ; colour "10" ; gene "cdb4 ||| SPAC23H4.09" ; Alias "cdb4" ; db_xref "SPD:18/18B01" ; GO "GO:0008237; metallopeptidase
GO:0003677; DNA binding
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human PA2G4 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cdb4" ; product "curved DNA-binding protein Cdb4, peptidase family" ;
chromosome1 GeneDB CDS 1591938 1593083 . - . mRNA SPAC23H4.09 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1593363 1593389 . - . mRNA SPAC23H4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H4.08" ; systematic_id "SPAC23H4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1593390 1594454 . - . mRNA SPAC23H4.08 ; db_xref "SPD:16/16C11" ; systematic_id "SPAC23H4.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL115C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006366; transcription from RNA polymerase II promoter
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0032569; gene specific transcription from RNA polymerase II promoter
GO:0032568; general transcription from RNA polymerase II promoter
GO:0006338; chromatin remodelling" ; gene "SPAC23H4.08" ; product "RNA polymerase II associated protein (predicted)" ;
chromosome1 GeneDB CDS 1593390 1593780 . - . mRNA SPAC23H4.08 ; colour "7" ;
chromosome1 GeneDB CDS 1593870 1594182 . - . mRNA SPAC23H4.08 ; colour "7" ;
chromosome1 GeneDB CDS 1594272 1594340 . - . mRNA SPAC23H4.08 ; colour "7" ;
chromosome1 GeneDB CDS 1594394 1594454 . - . mRNA SPAC23H4.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 1593781 1593793 . - . misc_feature unknown_1366 ; colour "6" ; note "ctaacattcatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1593781 1593869 . - . intron SPAC23H4.08 ; db_xref "SPD:16/16C11" ; systematic_id "SPAC23H4.08" ; gene "SPAC23H4.08" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1593864 1593869 . - . misc_feature unknown_1367 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1594183 1594196 . - . misc_feature unknown_1368 ; colour "6" ; note "ttgacagtttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1594266 1594271 . - . misc_feature unknown_1369 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1594341 1594360 . - . misc_feature unknown_1370 ; colour "6" ; note "ctaactccttaataatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1594388 1594393 . - . misc_feature unknown_1371 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1594453 1594516 . - . mRNA SPAC23H4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1595175 1595194 . + . mRNA SPAC23H4.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1595195 1595926 . + . mRNA SPAC23H4.07c ; systematic_id "SPAC23H4.07c" ; colour "7" ; gene "srp102 ||| SPAC23H4.07c" ; Alias "srp102" ; db_xref "SPD:08/08G06" ; GO "GO:0005785; signal recognition particle receptor complex
GO:0005047; signal recognition particle binding
GO:0006614; SRP-dependent cotranslational protein targeting to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL154W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "srp102" ; product "signal recognition particle receptor beta subunit Srp102 (predicted)" ;
chromosome1 GeneDB CDS 1595195 1595362 . + . mRNA SPAC23H4.07c ; colour "7" ;
chromosome1 GeneDB CDS 1595411 1595926 . + . mRNA SPAC23H4.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 1595363 1595368 . + . misc_feature unknown_1372 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome1 GeneDB intron 1595363 1595410 . + . intron SPAC23H4.07c ; Alias "srp102" ; db_xref "SPD:08/08G06" ; systematic_id "SPAC23H4.07c" ; primary_name "srp102" ; gene "srp102 ||| SPAC23H4.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1595396 1595410 . + . misc_feature unknown_1373 ; colour "6" ; note "ttaactgttatatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1595927 1596024 . + . mRNA SPAC23H4.07c ; Alias "srp102" ; ID "SPAC23H4.07c" ; db_xref "SPD:08/08G06" ; systematic_id "SPAC23H4.07c" ; primary_name "srp102" ; gene "srp102 ||| SPAC23H4.07c" ; note "mRNA from AU011494 128 1" ;
chromosome1 GeneDB 3'-UTR 1596443 1596491 . - . mRNA SPAC23H4.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H4.06" ; systematic_id "SPAC23H4.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1596492 1597571 . - . mRNA SPAC23H4.06 ; systematic_id "SPAC23H4.06" ; colour "2" ; gene "gln1 ||| SPAC23H4.06" ; Alias "gln1" ; db_xref "SPD:16/16G03" ; GO "GO:0006542; glutamine biosynthesis
GO:0019740; nitrogen utilization
GO:0004356; glutamate-ammonia ligase activity
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR035W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gln1" ; product "glutamate-ammonia ligase Gln1" ; EC_number "6.3.1.2" ;
chromosome1 GeneDB CDS 1596492 1597571 . - . mRNA SPAC23H4.06 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1597570 1598035 . - . mRNA SPAC23H4.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1599331 1599624 . + . mRNA SPAC23H4.05c ; db_xref "SPD:01/01D06" ; systematic_id "SPAC23H4.05c" ; controlled_curation "term=species distribution, sequence orphan; date=20091213 ||| term=warning, below 100 amino acid size threshold; cv=warning; date=20091213 ||| term=species distribution, sequence orphan, uncharacterised; date=20091213 ||| term=species distribution, no apparent orthologs; date=20091213 ||| term=species distribution, identified in S. pombe only; date=20091213 ||| term=warning, previously annotated as dubious; cv=warning; date=20091213" ; colour "8" ; gene "SPAC23H4.05c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1599331 1599624 . + . mRNA SPAC23H4.05c ; colour "8" ;
chromosome1 GeneDB CDS_parts 1601508 1602886 . - . mRNA SPAC23H4.04 ; db_xref "SPD:21/21D02" ; systematic_id "SPAC23H4.04" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL033C; date=19700101 ||| term=disease associated, epilepsy; date=20070822 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004808; tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase activity
GO:0005739; mitochondrion
GO:0008033; tRNA modification
GO:0032543; mitochondrial translation" ; gene "SPAC23H4.04" ; product "mitochondrialtRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase(predicted)" ; EC_number "2.1.1.61" ;
chromosome1 GeneDB CDS 1601508 1602593 . - . mRNA SPAC23H4.04 ; colour "7" ;
chromosome1 GeneDB CDS 1602681 1602742 . - . mRNA SPAC23H4.04 ; colour "7" ;
chromosome1 GeneDB CDS 1602787 1602886 . - . mRNA SPAC23H4.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 1602594 1602609 . - . misc_feature unknown_1374 ; colour "6" ; note "ctaaactttggtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1602675 1602680 . - . misc_feature unknown_1375 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1602743 1602759 . - . misc_feature unknown_1376 ; colour "6" ; note "ctaataatgtttttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1602781 1602786 . - . misc_feature unknown_1377 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1602885 1602933 . - . mRNA SPAC23H4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 1603305 1603376 . - . tRNA SPATRNATHR.01 ; systematic_id "SPATRNATHR.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033445; AGT codon-amino acid adaptor activity" ; gene "SPATRNATHR.01" ; product "tRNA Threonine" ; note "tRNA Thr anticodon AGT, Cove score 75.01" ;
chromosome1 GeneDB 5'-UTR 1603976 1604074 . + . mRNA SPAC23H4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1604075 1604858 . + . mRNA SPAC23H4.03c ; systematic_id "SPAC23H4.03c" ; colour "7" ; gene "erv25 ||| SPAC23H4.03c" ; Alias "erv25" ; db_xref "SPD:09/09G08" ; GO "GO:0030134; ER to Golgi transport vesicle
GO:0006888; ER to Golgi vesicle-mediated transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "erv25" ; product "COPII-coated vesicle component Erv25 (predicted)" ;
chromosome1 GeneDB CDS 1604075 1604396 . + . mRNA SPAC23H4.03c ; colour "7" ;
chromosome1 GeneDB CDS 1604530 1604858 . + . mRNA SPAC23H4.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 1604397 1604402 . + . misc_feature unknown_1378 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1604513 1604529 . + . misc_feature unknown_1379 ; colour "6" ; note "ctgacatttaaatgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1604859 1605116 . + . mRNA SPAC23H4.03c ; Alias "erv25" ; ID "SPAC23H4.03c" ; db_xref "SPD:09/09G08" ; systematic_id "SPAC23H4.03c" ; primary_name "erv25" ; gene "erv25 ||| SPAC23H4.03c" ; note "mRNA from AU011183" ;
chromosome1 GeneDB 3'-UTR 1605134 1605319 . - . mRNA SPAC23H4.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H4.02" ; systematic_id "SPAC23H4.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1605320 1607089 . - . mRNA SPAC23H4.02 ; systematic_id "SPAC23H4.02" ; colour "2" ; gene "ppk9 ||| SPAC23H4.02" ; Alias "ppk9" ; db_xref "SPD:36/36B12" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=related to S. pombe SPCC74.03C (paralog); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk9" ; product "serine/threonine protein kinase Ppk9 (predicted)" ;
chromosome1 GeneDB CDS 1605320 1606803 . - . mRNA SPAC23H4.02 ; colour "2" ;
chromosome1 GeneDB CDS 1606975 1607089 . - . mRNA SPAC23H4.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 1606804 1606815 . - . misc_feature unknown_1380 ; colour "6" ; note "ctaacagtgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1606969 1606974 . - . misc_feature unknown_1381 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1607088 1607114 . - . mRNA SPAC23H4.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1608047 1608161 . + . mRNA SPAC23H4.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H4.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1608162 1610999 . + . mRNA SPAC23H4.01c ; db_xref "SPD:29/29E11" ; systematic_id "SPAC23H4.01c" ; synonym "SPAP27G11.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YAR042W and YDL019C and YHR073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0008142; oxysterol binding
GO:0005545; phosphatidylinositol binding
GO:0005783; endoplasmic reticulum
GO:0015918; sterol transport
GO:0006897; endocytosis
GO:0006887; exocytosis" ; product "sterol binding ankyrin repeat protein (predicted)" ;
chromosome1 GeneDB CDS 1608162 1610999 . + . mRNA SPAC23H4.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 1610292 1610409 . + . misc_feature unknown_1382 ; note "nominal overlap with plasmid p27G11 and cosmid SPAC23H4" ;
chromosome1 GeneDB 3'-UTR 1611000 1611070 . + . mRNA SPAC23H4.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H4.01c" ; systematic_id "SPAC23H4.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1611513 1611563 . + . mRNA SPAP27G11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP27G11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1611564 1612634 . + . mRNA SPAP27G11.02 ; systematic_id "SPAP27G11.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL133C and YMR115W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006515; misfolded or incompletely synthesized protein catabolic process
GO:0051787; misfolded protein binding
GO:0005743; mitochondrial inner membrane
GO:0031942; iAAA complex" ; gene "SPAP27G11.02" ; product "TPR repeat protein, involved in mitochondrial protein turnover (predicted)" ;
chromosome1 GeneDB CDS 1611564 1612634 . + . mRNA SPAP27G11.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1612635 1612669 . + . mRNA SPAP27G11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP27G11.02" ; systematic_id "SPAP27G11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1613164 1613184 . + . mRNA SPAP27G11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP27G11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1613185 1614212 . + . mRNA SPAP27G11.03 ; systematic_id "SPAP27G11.03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR215C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=human D123 ortholog; date=20100222" ; colour "2" ; GO "GO:0006417; regulation of translation
GO:0005737; cytoplasm
GO:0007346; regulation of progression through mitotic cell cycle
GO:0007127; meiosis I
GO:0007126; ascospore formation" ; gene "SPAP27G11.03" ; product "D123 family protein" ;
chromosome1 GeneDB CDS 1613185 1613854 . + . mRNA SPAP27G11.03 ; colour "2" ;
chromosome1 GeneDB CDS 1613923 1614212 . + . mRNA SPAP27G11.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 1613855 1613860 . + . misc_feature unknown_1383 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1613908 1613922 . + . misc_feature unknown_1384 ; colour "6" ; note "ctaacttgaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1614260 1614500 . - . mRNA SPAP27G11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP27G11.04c" ; systematic_id "SPAP27G11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1614501 1615491 . - . mRNA SPAP27G11.04c ; systematic_id "SPAP27G11.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR316C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0046982; protein heterodimerization activity
GO:0006400; tRNA modification
GO:0008251; tRNA-specific adenosine deaminase activity" ; gene "SPAP27G11.04c" ; product "tRNA specific adenosine deaminase subunit Tad3 (predicted)" ;
chromosome1 GeneDB CDS 1614501 1615336 . - . mRNA SPAP27G11.04c ; colour "7" ;
chromosome1 GeneDB CDS 1615380 1615491 . - . mRNA SPAP27G11.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 1615337 1615349 . - . misc_feature unknown_1385 ; colour "6" ; note "ctgacaaaagaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1615374 1615379 . - . misc_feature unknown_1386 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 1615804 1615929 . - . mRNA SPAP27G11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP27G11.05c" ; systematic_id "SPAP27G11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1615930 1618744 . - . mRNA SPAP27G11.05c ; Alias "vps41" ; systematic_id "SPAP27G11.05c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR080W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, neurological disorders; date=20100621 ||| term=disease associated, Parkinson's disease; date=20100621 ||| term=human VPS41 ortholog; date=20100621" ; GO "GO:0030897; HOPS complex
GO:0042144; vacuole fusion, non-autophagic
GO:0048278; vesicle docking
GO:0007033; vacuole organization and biogenesis
GO:0045324; late endosome to vacuole transport
GO:0006895; Golgi to endosome transport
GO:0006623; protein targeting to vacuole" ; gene "vps41 ||| SPAP27G11.05c" ; primary_name "vps41" ; product "HOPS complex subunit Vps41 (predicted)" ;
chromosome1 GeneDB CDS 1615930 1618127 . - . mRNA SPAP27G11.05c ; colour "7" ;
chromosome1 GeneDB CDS 1618191 1618349 . - . mRNA SPAP27G11.05c ; colour "7" ;
chromosome1 GeneDB CDS 1618391 1618532 . - . mRNA SPAP27G11.05c ; colour "7" ;
chromosome1 GeneDB CDS 1618583 1618744 . - . mRNA SPAP27G11.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 1618128 1618143 . - . misc_feature unknown_1387 ; colour "6" ; note "ctaacgataaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1618185 1618190 . - . misc_feature unknown_1388 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1618350 1618363 . - . misc_feature unknown_1389 ; colour "6" ; note "ctgatctttattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1618385 1618390 . - . misc_feature unknown_1390 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1618533 1618549 . - . misc_feature unknown_1391 ; colour "6" ; note "ttaacatttgtgtatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1618577 1618582 . - . misc_feature unknown_1392 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1618743 1618884 . - . mRNA SPAP27G11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP27G11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1619483 1619532 . - . mRNA SPAP27G11.06c ; ID "SPAP27G11.06c" ; systematic_id "SPAP27G11.06c" ; gene "SPAP27G11.06c" ; note "mRNA from AU012921" ;
chromosome1 GeneDB CDS_parts 1619533 1620131 . - . mRNA SPAP27G11.06c ; Alias "vas2" ; systematic_id "SPAP27G11.06c" ; synonym "aps1" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:19624755; allele=vas2-1; cv=phenotype; date=20090817 ||| term=phenotype, sensitive to FK605; allele=vas2-1; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=orthologous to S. cerevisiae YLR170C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030121; AP-1 adaptor complex
GO:0005794; Golgi apparatus
GO:0005768; endosome
GO:0030276; clathrin binding
GO:0016197; endosome transport
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport" ; gene "SPAP27G11.06c" ; primary_name "vas2" ; product "AP-1 adaptor complex sigma subunit Aps1" ;
chromosome1 GeneDB CDS 1619533 1619727 . - . mRNA SPAP27G11.06c ; colour "2" ;
chromosome1 GeneDB CDS 1619785 1619915 . - . mRNA SPAP27G11.06c ; colour "2" ;
chromosome1 GeneDB CDS 1619969 1620131 . - . mRNA SPAP27G11.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 1619728 1619739 . - . misc_feature unknown_1393 ; colour "6" ; note "ttaaccgagtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1619728 1619784 . - . intron SPAP27G11.06c ; systematic_id "SPAP27G11.06c" ; gene "SPAP27G11.06c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1619779 1619784 . - . misc_feature unknown_1394 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1619916 1619934 . - . misc_feature unknown_1395 ; colour "6" ; note "ttaactgtatttgtcttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1619916 1619966 . - . intron SPAP27G11.06c ; systematic_id "SPAP27G11.06c" ; gene "SPAP27G11.06c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1619963 1619968 . - . misc_feature unknown_1396 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 1620498 1621262 . - . mRNA SPAP27G11.07c ; systematic_id "SPAP27G11.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR262C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000408; EKC/KEOPS protein complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0000723; telomere maintenance" ; gene "SPAP27G11.07c" ; product "serine/threonine protein kinase (predicted)" ;
chromosome1 GeneDB CDS 1620498 1620608 . - . mRNA SPAP27G11.07c ; colour "7" ;
chromosome1 GeneDB CDS 1620657 1621262 . - . mRNA SPAP27G11.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 1620609 1620622 . - . misc_feature unknown_1397 ; colour "6" ; note "ctaactgtttgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1620651 1620656 . - . misc_feature unknown_1398 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 1621639 1622867 . - . mRNA SPAP27G11.08c ; Alias "meu32" ; systematic_id "SPAP27G11.08c" ; synonym "mug11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=19700101 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "meu32" ; product "sequence orphan Meu32" ;
chromosome1 GeneDB CDS 1621639 1622195 . - . mRNA SPAP27G11.08c ; colour "8" ;
chromosome1 GeneDB CDS 1622246 1622867 . - . mRNA SPAP27G11.08c ; colour "8" ;
chromosome1 GeneDB misc_feature 1622196 1622212 . - . misc_feature unknown_1399 ; colour "6" ; note "ctcaccaaaatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1622240 1622245 . - . misc_feature unknown_1400 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 1623007 1623437 . - . mRNA SPAP27G11.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP27G11.09c" ; systematic_id "SPAP27G11.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1623438 1624418 . - . mRNA SPAP27G11.09c ; systematic_id "SPAP27G11.09c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL033C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0009231; riboflavin biosynthesis
GO:0019238; cyclohydrolase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003935; GTP cyclohydrolase II activity" ; gene "SPAP27G11.09c" ; product "GTP cyclohydrolase (predicted)" ;
chromosome1 GeneDB CDS 1623438 1624418 . - . mRNA SPAP27G11.09c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1624417 1624490 . - . mRNA SPAP27G11.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP27G11.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1624821 1625075 . - . mRNA SPAP27G11.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP27G11.10c" ; systematic_id "SPAP27G11.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1625076 1629841 . - . mRNA SPAP27G11.10c ; systematic_id "SPAP27G11.10c" ; colour "2" ; gene "nup184 ||| SPAP27G11.10c" ; note "Sequence differs at C-term to Q9Y8G4, EM:AF055035" ; Alias "nup184" ; GO "GO:0005643; nuclear pore
GO:0006607; NLS-bearing substrate import into nucleus
GO:0006406; mRNA export from nucleus
GO:0006611; protein export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML103C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nup184" ; product "nucleoporin Nup184" ;
chromosome1 GeneDB CDS 1625076 1629753 . - . mRNA SPAP27G11.10c ; colour "2" ;
chromosome1 GeneDB CDS 1629825 1629841 . - . mRNA SPAP27G11.10c ; colour "2" ;
chromosome1 GeneDB misc_feature 1629754 1629771 . - . misc_feature unknown_1401 ; colour "6" ; note "ttaacactttttgtgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1629819 1629824 . - . misc_feature unknown_1402 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1629840 1629936 . - . mRNA SPAP27G11.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP27G11.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1630900 1631203 . - . mRNA SPAP27G11.11c ; systematic_id "SPAP27G11.11c" ; controlled_curation "term=warning, below 100 amino acid size threshold; cv=warning; date=19700101" ; colour "6" ; gene "SPAP27G11.11c" ; product "dubious" ;
chromosome1 GeneDB CDS 1630900 1631098 . - . mRNA SPAP27G11.11c ; colour "6" ;
chromosome1 GeneDB CDS 1631181 1631203 . - . mRNA SPAP27G11.11c ; colour "6" ;
chromosome1 GeneDB misc_feature 1631099 1631114 . - . misc_feature unknown_1403 ; colour "6" ; note "ctaatttttcctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1631175 1631180 . - . misc_feature unknown_1404 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 1631283 1631597 . + . mRNA SPAP27G11.16 ; systematic_id "SPAP27G11.16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAP27G11.16" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1631283 1631597 . + . mRNA SPAP27G11.16 ; colour "8" ;
chromosome1 GeneDB CDS_parts 1632068 1634742 . + . mRNA SPAP27G11.12 ; systematic_id "SPAP27G11.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR436C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20091019 ||| term=human c17orf28 ortholog; date=20100517" ; colour "10" ; gene "SPAP27G11.12" ; product "human c17orf28 ortholog 1" ;
chromosome1 GeneDB CDS 1632068 1632087 . + . mRNA SPAP27G11.12 ; colour "10" ;
chromosome1 GeneDB CDS 1632167 1632209 . + . mRNA SPAP27G11.12 ; colour "10" ;
chromosome1 GeneDB CDS 1632362 1632394 . + . mRNA SPAP27G11.12 ; colour "10" ;
chromosome1 GeneDB CDS 1632445 1634742 . + . mRNA SPAP27G11.12 ; colour "10" ;
chromosome1 GeneDB misc_feature 1632088 1632093 . + . misc_feature unknown_1405 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1632152 1632166 . + . misc_feature unknown_1406 ; colour "6" ; note "ttaaccaaattacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1632210 1632215 . + . misc_feature unknown_1407 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1632349 1632361 . + . misc_feature unknown_1408 ; colour "6" ; note "ctaaccaattcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1632395 1632400 . + . misc_feature unknown_1409 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1632431 1632444 . + . misc_feature unknown_1410 ; colour "6" ; note "ctaataatctttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1634743 1634832 . + . mRNA SPAP27G11.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP27G11.12" ; systematic_id "SPAP27G11.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1635111 1635257 . - . mRNA SPAP27G11.13c ; Alias "nop10" ; ID "SPAP27G11.13c" ; systematic_id "SPAP27G11.13c" ; primary_name "nop10" ; gene "nop10 ||| SPAP27G11.13c" ; note "mRNA from AU007918" ;
chromosome1 GeneDB CDS_parts 1635258 1635504 . - . mRNA SPAP27G11.13c ; Alias "nop10" ; systematic_id "SPAP27G11.13c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR072W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0006364; 35S primary transcript processing
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0001522; pseudouridine synthesis" ; gene "nop10 ||| SPAP27G11.13c" ; primary_name "nop10" ; product "small nucleolar ribonucleoprotein Nop10 (predicted)" ;
chromosome1 GeneDB CDS 1635258 1635274 . - . mRNA SPAP27G11.13c ; colour "7" ;
chromosome1 GeneDB CDS 1635327 1635504 . - . mRNA SPAP27G11.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 1635275 1635285 . - . misc_feature unknown_1411 ; colour "6" ; note "ctaacgattag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1635275 1635326 . - . intron SPAP27G11.13c ; Alias "nop10" ; systematic_id "SPAP27G11.13c" ; primary_name "nop10" ; gene "nop10 ||| SPAP27G11.13c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1635321 1635326 . - . misc_feature unknown_1412 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1635505 1635536 . - . mRNA SPAP27G11.13c ; Alias "nop10" ; ID "SPAP27G11.13c" ; systematic_id "SPAP27G11.13c" ; primary_name "nop10" ; gene "nop10 ||| SPAP27G11.13c" ; note "mRNA from AU008508" ;
chromosome1 GeneDB 3'-UTR 1635933 1636061 . - . mRNA SPAP27G11.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP27G11.14c" ; systematic_id "SPAP27G11.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1636062 1638131 . - . mRNA SPAP27G11.14c ; systematic_id "SPAP27G11.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAP27G11.14c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1636062 1638131 . - . mRNA SPAP27G11.14c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 1638130 1638240 . - . mRNA SPAP27G11.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP27G11.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1638643 1639499 . + . mRNA SPAP27G11.15 ; Alias "slx1" ; systematic_id "SPAP27G11.15" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14528010; date=19700101 ||| term=orthologous to S. cerevisiae YBR228W; date=19700101 ||| term=localization rDNA protrusions; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=catalytic activity, active site mapping; residue=R34|E74; db_xref=PMID:14528010; cv=cat_act; date=20091216" ; GO "GO:0033557; Slx1-Slx4 complex
GO:0030874; nucleolar chromatin
GO:0016894; endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'- phosphomonoesters
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0043007; maintenance of rDNA
GO:0045458; recombination within rDNA repeats
GO:0034065; replication fork processing at rDNA locus" ; gene "slx1 ||| SPAP27G11.15" ; primary_name "slx1" ; product "structure-specific endonuclease catalytic subunit" ;
chromosome1 GeneDB CDS 1638643 1638741 . + . mRNA SPAP27G11.15 ; colour "2" ;
chromosome1 GeneDB CDS 1638783 1639499 . + . mRNA SPAP27G11.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 1638742 1638747 . + . misc_feature unknown_1413 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1638769 1638782 . + . misc_feature unknown_1414 ; colour "6" ; note "ctaatttgttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1639232 1639538 . - . mRNA SPAC343.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.01c" ; systematic_id "SPAC343.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 1639479 1639576 . + . misc_feature unknown_1415 ; note "nominal overlap with cosmid SPAC343 EM:AL109739 S. pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 1639539 1640885 . - . mRNA SPAC343.01c ; systematic_id "SPAC343.01c" ; colour "7" ; gene "SPAC343.01c ||| erg8" ; Alias "erg8" ; db_xref "SPD:20/20G11" ; GO "GO:0004631; phosphomevalonate kinase activity
GO:0006696; ergosterol biosynthesis
GO:0005829; cytosol" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR220W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "erg8" ; product "phosphomevalonate kinase (predicted)" ; EC_number "2.7.4.2" ; reserved_name "erg8" ;
chromosome1 GeneDB CDS 1639539 1640811 . - . mRNA SPAC343.01c ; colour "7" ;
chromosome1 GeneDB CDS 1640878 1640885 . - . mRNA SPAC343.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 1640812 1640831 . - . misc_feature unknown_1416 ; colour "6" ; note "ctaactagcgtctttggcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1640872 1640877 . - . misc_feature unknown_1417 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1640884 1641213 . - . mRNA SPAC343.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1641706 1641754 . + . mRNA SPAC343.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1641755 1642303 . + . mRNA SPAC343.02 ; systematic_id "SPAC343.02" ; colour "7" ; gene "SPAC343.02 ||| img1" ; Alias "img1" ; db_xref "SPD:05/05F03" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR046C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "img1" ; product "mitochondrial ribosomal protein subunit L19 (predicted)" ;
chromosome1 GeneDB CDS 1641755 1642303 . + . mRNA SPAC343.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1642304 1642753 . + . mRNA SPAC343.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.02" ; systematic_id "SPAC343.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1643082 1643107 . + . mRNA SPAC343.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1643108 1643652 . + . mRNA SPAC343.03 ; systematic_id "SPAC343.03" ; colour "2" ; gene "apc11 ||| SPAC343.03" ; Alias "apc11" ; db_xref "SPD:05/05E08" ; GO "GO:0005680; anaphase-promoting complex
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0008054; cyclin catabolism
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "apc11" ; product "anaphase-promoting complex subunit Apc11" ;
chromosome1 GeneDB CDS 1643108 1643126 . + . mRNA SPAC343.03 ; colour "2" ;
chromosome1 GeneDB CDS 1643170 1643292 . + . mRNA SPAC343.03 ; colour "2" ;
chromosome1 GeneDB CDS 1643510 1643652 . + . mRNA SPAC343.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 1643127 1643132 . + . misc_feature unknown_1418 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1643159 1643169 . + . misc_feature unknown_1419 ; colour "6" ; note "ctaaccactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1643293 1643298 . + . misc_feature unknown_1420 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1643497 1643509 . + . misc_feature unknown_1421 ; colour "6" ; note "ctaactacgctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1643797 1643932 . - . mRNA SPAC343.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.04c" ; systematic_id "SPAC343.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1643933 1645634 . - . mRNA SPAC343.04c ; systematic_id "SPAC343.04c" ; colour "7" ; gene "SPAC343.04c" ; note "was incorrectly annotated as gnr1" ; db_xref "SPD:35/35D08" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0045721; negative regulation of gluconeogenesis
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0034657; GID complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCL039W; date=19700101 ||| term=human WDR26 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "WD repeat protein, human WDR26 family, ubiquitin ligase complex subunit (predicted)" ;
chromosome1 GeneDB CDS 1643933 1645231 . - . mRNA SPAC343.04c ; colour "7" ;
chromosome1 GeneDB CDS 1645356 1645506 . - . mRNA SPAC343.04c ; colour "7" ;
chromosome1 GeneDB CDS 1645561 1645634 . - . mRNA SPAC343.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 1645232 1645247 . - . misc_feature unknown_1422 ; colour "6" ; note "ctaacatgtactctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1645350 1645355 . - . misc_feature unknown_1423 ; colour "6" ; note "gtaaac, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1645507 1645524 . - . misc_feature unknown_1424 ; colour "6" ; note "ctaacgttattttggtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1645555 1645560 . - . misc_feature unknown_1425 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1645633 1645832 . - . mRNA SPAC343.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 1646292 1646362 . - . tRNA SPATRNAGLY.01 ; systematic_id "SPATRNAGLY.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033454; GCC codon-amino acid adaptor activity" ; gene "SPATRNAGLY.01" ; product "tRNA Glycine" ; note "tRNA Gly anticodon GCC, Cove score 72.94" ;
chromosome1 GeneDB CDS_parts 1647259 1649215 . + . mRNA SPAC343.05 ; systematic_id "SPAC343.05" ; colour "2" ; gene "vma1 ||| SPAC343.05" ; Alias "vma1" ; db_xref "SPD:27/27A06" ; GO "GO:0000221; hydrogen-transporting ATPase V1 domain
GO:0005524; ATP binding
GO:0046961; hydrogen ion transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0006897; endocytosis
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL185W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "vma1" ; product "V-type ATPase V1 domain, subunit A" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB CDS 1647259 1647261 . + . mRNA SPAC343.05 ; colour "2" ;
chromosome1 GeneDB CDS 1647317 1647416 . + . mRNA SPAC343.05 ; colour "2" ;
chromosome1 GeneDB CDS 1647459 1649215 . + . mRNA SPAC343.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 1647262 1647267 . + . misc_feature unknown_1426 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1647301 1647316 . + . misc_feature unknown_1427 ; colour "6" ; note "ttaacaaatttgatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1647417 1647422 . + . misc_feature unknown_1428 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1647445 1647458 . + . misc_feature unknown_1429 ; colour "6" ; note "ctaaacatttacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1649216 1649410 . + . mRNA SPAC343.05 ; Alias "vma1" ; ID "SPAC343.05" ; db_xref "SPD:27/27A06" ; systematic_id "SPAC343.05" ; primary_name "vma1" ; gene "vma1 ||| SPAC343.05" ; note "mRNA from AU009902" ;
chromosome1 GeneDB CDS_parts 1649612 1650757 . - . mRNA SPAC343.06c ; db_xref "SPD:43/43H05" ; systematic_id "SPAC343.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, palmitoylated; cv=pt_mod; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YJR100C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0017128; phospholipid scramblase activity
GO:0017121; phospholipid scrambling" ; colour "7" ; gene "SPAC343.06c" ; product "phospholipid scramblase (predicted)" ;
chromosome1 GeneDB CDS 1649612 1650757 . - . mRNA SPAC343.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1650756 1650783 . - . mRNA SPAC343.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1651012 1652981 . + . mRNA SPAC343.07 ; systematic_id "SPAC343.07" ; colour "2" ; gene "mug28 ||| SPAC343.07" ; db_xref "SPD:27/27B10" ; Alias "mug28" ; GO "GO:0003723; RNA binding
GO:0030437; sporulation (sensu Fungi)
GO:0005737; cytoplasm
GO:0005628; prospore membrane
GO:0031321; ascospore-type prospore formation
GO:0005619; ascospore wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe crp79; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:20410137; date=20100426 ||| term=phenotype, sporulation defects; cv=phenotype; db_xref=PMID:20410137; date=20100426 ||| term=phenotype, cell morphology, snowman during sporulation; cv=phenotype; db_xref=PMID:20410137; date=20100426" ; primary_name "mug28" ; product "RNA-binding protein Mug28" ;
chromosome1 GeneDB CDS 1651012 1651141 . + . mRNA SPAC343.07 ; colour "2" ;
chromosome1 GeneDB CDS 1651185 1651341 . + . mRNA SPAC343.07 ; colour "2" ;
chromosome1 GeneDB CDS 1651389 1652076 . + . mRNA SPAC343.07 ; colour "2" ;
chromosome1 GeneDB CDS 1652127 1652981 . + . mRNA SPAC343.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 1651142 1651147 . + . misc_feature unknown_1430 ; colour "6" ; note "gtaatc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1651172 1651184 . + . misc_feature unknown_1431 ; colour "6" ; note "ctaactgtttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1651342 1651347 . + . misc_feature unknown_1432 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1651368 1651388 . + . misc_feature unknown_1433 ; colour "6" ; note "ctaatagagcaacaattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1652077 1652082 . + . misc_feature unknown_1434 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1652110 1652126 . + . misc_feature unknown_1435 ; colour "6" ; note "ctgaccttttaatttag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 1653288 1653783 . - . mRNA SPAC343.08c ; systematic_id "SPAC343.08c" ; colour "7" ; gene "SPAC343.08c ||| mrp17" ; Alias "mrp17" ; db_xref "SPD:04/04G08" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrp17" ; product "mitochondrial ribosomal protein subunit Mrp17 (predicted)" ;
chromosome1 GeneDB CDS 1653288 1653306 . - . mRNA SPAC343.08c ; colour "7" ;
chromosome1 GeneDB CDS 1653356 1653606 . - . mRNA SPAC343.08c ; colour "7" ;
chromosome1 GeneDB CDS 1653724 1653783 . - . mRNA SPAC343.08c ; colour "7" ;
chromosome1 GeneDB misc_feature 1653307 1653324 . - . misc_feature unknown_1436 ; colour "6" ; note "ctaattccttttgtgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1653350 1653355 . - . misc_feature unknown_1437 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1653607 1653619 . - . misc_feature unknown_1438 ; colour "6" ; note "ctaataaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1653718 1653723 . - . misc_feature unknown_1439 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1654080 1654283 . + . mRNA SPAC343.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1654284 1655516 . + . mRNA SPAC343.09 ; systematic_id "SPAC343.09" ; colour "2" ; gene "ubx3 ||| mug39 ||| SPAC343.09" ; Alias "ubx3" ; db_xref "SPD:19/19F04" ; synonym "mug39" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15120077; date=19700101 ||| term=orthologous to S. cerevisiae YBL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:15120077; date=20100708 ||| term=phenotype, cell morphology, swollen cells; qualifier=ts; db_xref=PMID:15120077; date=20100708 ||| term=target is Rum1; db_xref=PMID:15120077; date=20100823" ; GO "GO:0004869; cysteine protease inhibitor activity
GO:0005515; protein binding
GO:0043130; ubiquitin binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0030437; sporulation (sensu Fungi)
GO:0006944; cellular membrane fusion" ; primary_name "ubx3" ; product "UBX domain protein Ubx3, Cdc48 cofactor" ;
chromosome1 GeneDB CDS 1654284 1655516 . + . mRNA SPAC343.09 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1655517 1655830 . + . mRNA SPAC343.09 ; Alias "ubx3" ; ID "SPAC343.09" ; db_xref "SPD:19/19F04" ; systematic_id "SPAC343.09" ; primary_name "ubx3" ; gene "ubx3 ||| mug39 ||| SPAC343.09" ; note "mRNA from AU012585" ;
chromosome1 GeneDB 5'-UTR 1656172 1656238 . + . mRNA SPAC343.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1656239 1658164 . + . mRNA SPAC343.10 ; systematic_id "SPAC343.10" ; colour "2" ; gene "met11 ||| mthfr2 ||| SPAC343.10" ; Alias "met11" ; db_xref "SPD:26/26G12" ; synonym "mthfr2" ; GO "GO:0005737; cytoplasm
GO:0004489; methylenetetrahydrofolate reductase (NADPH) activity
GO:0006555; methionine biopsynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, homocyctinuria; date=20060724 ||| term=orthologous to S. cerevisiae YPL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "met11" ; product "methylenetetrahydrofolate reductase Met11" ; EC_number "1.5.1.20" ;
chromosome1 GeneDB CDS 1656239 1658164 . + . mRNA SPAC343.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1658165 1658318 . + . mRNA SPAC343.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.10" ; systematic_id "SPAC343.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1658428 1658474 . - . mRNA SPAC343.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.11c" ; systematic_id "SPAC343.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1658475 1663241 . - . mRNA SPAC343.11c ; systematic_id "SPAC343.11c" ; colour "2" ; gene "msc1 ||| SPAC343.11c" ; db_xref "SPD:31/31A04" ; Alias "msc1" ; GO "GO:0000790; nuclear chromatin
GO:0000118; histone deacetylase complex
GO:0032452; histone demethylase activity
GO:0005515; protein binding
GO:0016568 ; chromatin modification
GO:0016573; histone acetylation
GO:0016577; histone demethylation
GO:0007126; meiosis
GO:0007126; meiosis
GO:0006355; regulation of transcription, DNA- dependent
GO:0006974; response to DNA damage stimulus
GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C5HC2 type; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=jmjC domain; date=19700101 ||| term=jmjN domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15082762; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Multi copy Suppressor of Chk1; cv=name_description; db_xref=PMID:15082762; date=20090717" ; primary_name "msc1" ; product "multi-copy suppressor of Chk1" ;
chromosome1 GeneDB CDS 1658475 1663241 . - . mRNA SPAC343.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1663240 1663321 . - . mRNA SPAC343.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 1663486 1663829 . + . LTR unknown_1440 ; note "Tf2 type LTR" ;
chromosome1 GeneDB misc_feature 1665661 1667146 . + . misc_feature unknown_1441 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG299 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 1667775 1668070 . + . mRNA SPAC343.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1668071 1669279 . + . mRNA SPAC343.12 ; systematic_id "SPAC343.12" ; colour "2" ; gene "rds1 ||| SPAC343.12" ; Alias "rds1" ; db_xref "SPD:19/19C06" ; GO "GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by glucose; db_xref=PMID:7565608; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by ammoniu; db_xref=PMID:7565608; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by phosphate; db_xref=PMID:7565608; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by carbon dioxide; db_xref=PMID:7565608; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by temperature; db_xref=PMID:7565608; cv=gene_ex; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to N. crassa b19a17.210; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; primary_name "rds1" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 1668071 1669279 . + . mRNA SPAC343.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1669280 1669592 . + . mRNA SPAC343.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.12" ; systematic_id "SPAC343.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1669623 1669964 . - . mRNA SPAC343.20 ; db_xref "SPD:51/51G12" ; systematic_id "SPAC343.20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "6" ; gene "SPAC343.20" ; product "dubious" ;
chromosome1 GeneDB CDS 1669623 1669964 . - . mRNA SPAC343.20 ; colour "6" ;
chromosome1 GeneDB CDS_parts 1670355 1672071 . + . mRNA SPAC343.13 ; db_xref "SPD:35/35F01" ; systematic_id "SPAC343.13" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL080C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0032543; mitochondrial translation
GO:0006400; tRNA modification" ; gene "SPAC343.13" ; product "mitochondrial glutamyl-tRNA amidotransferase beta subunit (predicted)" ;
chromosome1 GeneDB CDS 1670355 1670510 . + . mRNA SPAC343.13 ; colour "7" ;
chromosome1 GeneDB CDS 1670577 1670813 . + . mRNA SPAC343.13 ; colour "7" ;
chromosome1 GeneDB CDS 1670884 1672071 . + . mRNA SPAC343.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 1670511 1670516 . + . misc_feature unknown_1442 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1670555 1670576 . + . misc_feature unknown_1443 ; colour "6" ; note "ttaactttttatttttttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1670814 1670819 . + . misc_feature unknown_1444 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1670865 1670883 . + . misc_feature unknown_1445 ; colour "6" ; note "ttaacaaacttatatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1672072 1672122 . + . mRNA SPAC343.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.13" ; systematic_id "SPAC343.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1672285 1672375 . - . mRNA SPAC343.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.14c" ; systematic_id "SPAC343.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1672376 1673655 . - . mRNA SPAC343.14c ; db_xref "SPD:44/44B07" ; systematic_id "SPAC343.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, leukoencephalopathy; date=20060821 ||| term=orthologous to S. cerevisiae YLR291C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, neurological disorders; date=20060926" ; colour "7" ; GO "GO:0006413; translational initiation
; eukaryotic translation initiation factor 2B complex
GO:0003743; translation initiation factor activity" ; gene "SPAC343.14c" ; product "translation initiation factor eIF2B beta subunit (predicted)" ;
chromosome1 GeneDB CDS 1672376 1672952 . - . mRNA SPAC343.14c ; colour "7" ;
chromosome1 GeneDB CDS 1672999 1673389 . - . mRNA SPAC343.14c ; colour "7" ;
chromosome1 GeneDB CDS 1673442 1673655 . - . mRNA SPAC343.14c ; colour "7" ;
chromosome1 GeneDB misc_feature 1672953 1672965 . - . misc_feature unknown_1446 ; colour "6" ; note "ctaacctttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1672993 1672998 . - . misc_feature unknown_1447 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB intron 1673221 1673298 . - . intron SPAC343.14c ; db_xref "SPD:44/44B07" ; systematic_id "SPAC343.14c" ; gene "SPAC343.14c" ; note "intron improves homology but is covered by an EST, " ;
chromosome1 GeneDB misc_feature 1673390 1673402 . - . misc_feature unknown_1448 ; colour "6" ; note "ctaaaccgtgaag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1673390 1673441 . - . intron SPAC343.14c ; db_xref "SPD:44/44B07" ; systematic_id "SPAC343.14c" ; gene "SPAC343.14c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1673436 1673441 . - . misc_feature unknown_1449 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1673882 1673946 . + . mRNA SPAC343.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1673947 1675251 . + . mRNA SPAC343.15 ; systematic_id "SPAC343.15" ; colour "7" ; gene "SPAC343.15 ||| tit1 ||| mod5" ; Alias "tit1" ; db_xref "SPD:22/22F11" ; synonym "mod5" ; GO "GO:0005829; cytosol
GO:0005739; mitochondrion
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0052381; tRNA dimethylallytransferase activity
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR274W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tit1" ; product "tRNA isopentenyltransferase (predicted)" ; reserved_name "tit1" ;
chromosome1 GeneDB CDS 1673947 1675251 . + . mRNA SPAC343.15 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1675252 1675367 . + . mRNA SPAC343.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.15" ; systematic_id "SPAC343.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1675730 1677895 . + . mRNA SPAC343.16 ; systematic_id "SPAC343.16" ; colour "2" ; gene "lys2 ||| SPAC343.16" ; Alias "lys2" ; db_xref "SPD:37/37G03" ; GO "GO:0005739; mitochondrion
GO:0004409; homoaconitate hydratase activity
GO:0019878; lysine biosynthesis via aminoadipic acid" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR234W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lys2" ; product "homoaconitate hydratase Lys2" ; EC_number "4.2.1.36" ;
chromosome1 GeneDB CDS 1675730 1677895 . + . mRNA SPAC343.16 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1677896 1678118 . + . mRNA SPAC343.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.16" ; systematic_id "SPAC343.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1678182 1679968 . - . mRNA SPAC343.17c ; db_xref "SPD:45/45H03" ; systematic_id "SPAC343.17c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0000132; establishment of mitotic spindle orientation" ; gene "SPAC343.17c" ; product "WD repeat protein, human WDR70 family" ;
chromosome1 GeneDB CDS 1678182 1679642 . - . mRNA SPAC343.17c ; colour "10" ;
chromosome1 GeneDB CDS 1679699 1679968 . - . mRNA SPAC343.17c ; colour "10" ;
chromosome1 GeneDB misc_feature 1679643 1679657 . - . misc_feature unknown_1450 ; colour "6" ; note "ctaatttttggtaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1679693 1679698 . - . misc_feature unknown_1451 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1679967 1680097 . - . mRNA SPAC343.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1680205 1680413 . + . mRNA SPAC343.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1680414 1681084 . + . mRNA SPAC343.18 ; systematic_id "SPAC343.18" ; colour "2" ; gene "SPAC343.18 ||| rfp2" ; Alias "rfp2" ; db_xref "SPD:42/42H04" ; GO "GO:0033768; SUMO-targeted ubiquitin ligase complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006281; DNA repair
GO:0033234; negative regulation of protein sumoylation
GO:0033234; negative regulation of protein sumoylation
GO:0007346; regulation of mitotic cell cycle
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDL013W; date=20070716 ||| term=human RNF4 family; db_xref=PMID:17502373; date=20070716 ||| term=SUMO interaction motif; db_xref=PMID:17762865; date=20071123 ||| term=complementation, functionally complemented by human RNF4; db_xref=PMID:17762865; cv=complementation; date=20071123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rfp2" ; product "SUMO-targeted ubiquitin-protein ligase subunit Rfp2" ;
chromosome1 GeneDB CDS 1680414 1680435 . + . mRNA SPAC343.18 ; colour "2" ;
chromosome1 GeneDB CDS 1680489 1681084 . + . mRNA SPAC343.18 ; colour "2" ;
chromosome1 GeneDB misc_feature 1680436 1680441 . + . misc_feature unknown_1452 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1680468 1680488 . + . misc_feature unknown_1453 ; colour "6" ; note "ttaacgtctacacgtttctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1681085 1681471 . + . mRNA SPAC343.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.18" ; systematic_id "SPAC343.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1681802 1681952 . + . mRNA SPAC343.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC343.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1681953 1683827 . + . mRNA SPAC343.19 ; systematic_id "SPAC343.19" ; colour "7" ; gene "SPAC343.19 ||| SPAC824.01 ||| lsb6" ; Alias "lsb6" ; db_xref "SPD:46/46A08" ; synonym "SPAC824.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL100W; date=19700101 ||| term=human PI4KII and PI4K2B ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0007015; actin filament organization
GO:0004430; 1-phosphatidylinositol 4-kinase activity
GO:0005737; cytoplasm
GO:0016020; membrane
GO:0046854; phosphoinositide phosphorylation" ; primary_name "lsb6" ; product "1-phosphatidylinositol 4-kinase Lsb6 (predicted)" ; EC_number "2.7.1.67" ;
chromosome1 GeneDB CDS 1681953 1683827 . + . mRNA SPAC343.19 ; colour "7" ;
chromosome1 GeneDB misc_feature 1682327 1682425 . + . misc_feature unknown_1454 ; note "nominal overlap with cosmid SPAC824 and cosmid SPAC343" ;
chromosome1 GeneDB 3'-UTR 1683828 1684385 . + . mRNA SPAC343.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC343.19" ; systematic_id "SPAC343.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1684607 1685189 . + . mRNA SPAC824.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC824.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1685190 1688618 . + . mRNA SPAC824.02 ; db_xref "SPD:48/48C06" ; systematic_id "SPAC824.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL025C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0050185; phosphatidylinositol deacylase activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006505; GPI anchor metabolism
GO:0046488; phosphatidylinositol metabolic process
GO:0006621; protein retention in ER
GO:0016050; vesicle organization and biogenesis" ; gene "SPAC824.02" ; product "GPI inositol deacylase (predicted)" ; EC_number "3.1.1.-" ;
chromosome1 GeneDB CDS 1685190 1688618 . + . mRNA SPAC824.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1688619 1688732 . + . mRNA SPAC824.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC824.02" ; systematic_id "SPAC824.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1688787 1688901 . - . mRNA SPAC824.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC824.03c" ; systematic_id "SPAC824.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1688902 1689645 . - . mRNA SPAC824.03c ; db_xref "SPD:09/09A06" ; systematic_id "SPAC824.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR305W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC824.03c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 1688902 1689645 . - . mRNA SPAC824.03c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 1689644 1690107 . - . mRNA SPAC824.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC824.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1690272 1690361 . + . mRNA SPAC824.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC824.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1690362 1691387 . + . mRNA SPAC824.04 ; systematic_id "SPAC824.04" ; colour "7" ; gene "SPAC824.04" ; note "swd2.2 ||| S. pombe paralogues are functionally diverged, S. cerevisiae YKL018W is a member of both CPF and SET1 complex (PMID 14617822)" ; db_xref "SPD:15/15D05" ; GO "GO:0006378; mRNA polyadenylation
GO:0006379; mRNA cleavage
GO:0005847; mRNA cleavage and polyadenylation specificity factor complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "WD repeat protein (predicted)" ;
chromosome1 GeneDB CDS 1690362 1691387 . + . mRNA SPAC824.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1691388 1691593 . + . mRNA SPAC824.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC824.04" ; systematic_id "SPAC824.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1691977 1692006 . + . mRNA SPAC824.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC824.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1692007 1694721 . + . mRNA SPAC824.05 ; systematic_id "SPAC824.05" ; colour "7" ; gene "vps16 ||| SPAC824.05" ; Alias "vps16" ; db_xref "SPD:39/39A06" ; GO "GO:0030897; HOPS complex
GO:0042144; vacuole fusion, non-autophagic
GO:0048278; vesicle docking
GO:0007033; vacuole organization and biogenesis
GO:0045324; late endosome to vacuole transport
GO:0006895; Golgi to endosome transport
GO:0006623; protein targeting to vacuole" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL045W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps16" ; product "HOPS complex subunit Vps16 (predicted)" ;
chromosome1 GeneDB CDS 1692007 1692037 . + . mRNA SPAC824.05 ; colour "7" ;
chromosome1 GeneDB CDS 1692078 1692112 . + . mRNA SPAC824.05 ; colour "7" ;
chromosome1 GeneDB CDS 1692161 1692242 . + . mRNA SPAC824.05 ; colour "7" ;
chromosome1 GeneDB CDS 1692297 1692406 . + . mRNA SPAC824.05 ; colour "7" ;
chromosome1 GeneDB CDS 1692472 1694721 . + . mRNA SPAC824.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 1692038 1692043 . + . misc_feature unknown_1455 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1692064 1692077 . + . misc_feature unknown_1456 ; colour "6" ; note "ctaatttacgaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1692113 1692118 . + . misc_feature unknown_1457 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1692148 1692160 . + . misc_feature unknown_1458 ; colour "6" ; note "ctaatgtaactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1692243 1692248 . + . misc_feature unknown_1459 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1692280 1692296 . + . misc_feature unknown_1460 ; colour "6" ; note "ctaattatttgaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1692407 1692412 . + . misc_feature unknown_1461 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1692455 1692471 . + . misc_feature unknown_1462 ; colour "6" ; note "ctaatttttctgtgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1694722 1694783 . + . mRNA SPAC824.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC824.05" ; systematic_id "SPAC824.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1695057 1695101 . + . mRNA SPAC824.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC824.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1695102 1695624 . + . mRNA SPAC824.06 ; systematic_id "SPAC824.06" ; colour "7" ; gene "tim14 ||| SPAC824.06" ; Alias "tim14" ; db_xref "SPD:05/05C01" ; GO "GO:0001405; presequence translocase-associated import motor
GO:0001671; ATPase activator activity
GO:0030544; Hsp70 protein binding
GO:0015450; protein translocase activity
GO:0051082; unfolded protein binding
GO:0030150; protein import into mitochondrial matrix" ; controlled_curation "term=orthologous to S. cerevisiae YLR008C and YNL328C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tim14" ; product "TIM23 translocase complex subunit Tim14 (predicted)" ;
chromosome1 GeneDB CDS 1695102 1695104 . + . mRNA SPAC824.06 ; colour "7" ;
chromosome1 GeneDB CDS 1695152 1695199 . + . mRNA SPAC824.06 ; colour "7" ;
chromosome1 GeneDB CDS 1695253 1695624 . + . mRNA SPAC824.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 1695105 1695110 . + . misc_feature unknown_1463 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1695133 1695151 . + . misc_feature unknown_1464 ; colour "6" ; note "ctaacttatttttgattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1695200 1695205 . + . misc_feature unknown_1465 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1695240 1695252 . + . misc_feature unknown_1466 ; colour "6" ; note "ctaatgactttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1695625 1696265 . + . mRNA SPAC824.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC824.06" ; systematic_id "SPAC824.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1696488 1696570 . + . mRNA SPAC824.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC824.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1696571 1697483 . + . mRNA SPAC824.07 ; db_xref "SPD:12/12F07" ; systematic_id "SPAC824.07" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR272W and YOR040W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004416; hydroxyacylglutathione hydrolase activity
GO:0019243; methylglyoxal catabolism to D-lactate
GO:0051595; response to methylglyoxal" ; gene "SPAC824.07" ; product "hydroxyacylglutathione hydrolase (predicted)" ; EC_number "3.1.2.6" ;
chromosome1 GeneDB CDS 1696571 1696689 . + . mRNA SPAC824.07 ; colour "7" ;
chromosome1 GeneDB CDS 1696832 1697483 . + . mRNA SPAC824.07 ; colour "7" ;
chromosome1 GeneDB misc_feature 1696690 1696695 . + . misc_feature unknown_1467 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1696818 1696831 . + . misc_feature unknown_1468 ; colour "6" ; note "ttgacaaactctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1697484 1697641 . + . mRNA SPAC824.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC824.07" ; systematic_id "SPAC824.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1697918 1698037 . + . mRNA SPAC824.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC824.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1698038 1699708 . + . mRNA SPAC824.08 ; systematic_id "SPAC824.08" ; colour "2" ; gene "gda1 ||| SPAC824.08 ||| gdp1" ; Alias "gda1" ; db_xref "SPD:34/34H12" ; synonym "gdp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL042W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=complementation, functionally complements S. cerevisiae GDA1; db_xref=PMID:14612233; date=20101012" ; GO "GO:0005794; Golgi apparatus
GO:0004382; guanosine-diphosphatase activity
GO:0004551; nucleotide diphosphatase activity
GO:0006486; protein amino acid glycosylation" ; primary_name "gda1" ; product "guanosine-diphosphatase Gda1" ;
chromosome1 GeneDB CDS 1698038 1699708 . + . mRNA SPAC824.08 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1699709 1700118 . + . mRNA SPAC824.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC824.08" ; systematic_id "SPAC824.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1700227 1700316 . - . mRNA SPAC824.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC824.09c" ; systematic_id "SPAC824.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1700317 1701601 . - . mRNA SPAC824.09c ; db_xref "SPD:22/22C07" ; systematic_id "SPAC824.09c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL044C and YDR524C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0008060; ARF GTPase activator activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0030136; clathrin-coated vesicle
GO:0051056; regulation of small GTPase mediated signal transduction" ; gene "SPAC824.09c" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB CDS 1700317 1700959 . - . mRNA SPAC824.09c ; colour "7" ;
chromosome1 GeneDB CDS 1701098 1701142 . - . mRNA SPAC824.09c ; colour "7" ;
chromosome1 GeneDB CDS 1701214 1701292 . - . mRNA SPAC824.09c ; colour "7" ;
chromosome1 GeneDB CDS 1701362 1701405 . - . mRNA SPAC824.09c ; colour "7" ;
chromosome1 GeneDB CDS 1701450 1701601 . - . mRNA SPAC824.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 1700960 1700974 . - . misc_feature unknown_1469 ; colour "6" ; note "ctgacctagatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1701092 1701097 . - . misc_feature unknown_1470 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1701143 1701158 . - . misc_feature unknown_1471 ; colour "6" ; note "ctaacaactttaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1701208 1701213 . - . misc_feature unknown_1472 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1701293 1701309 . - . misc_feature unknown_1473 ; colour "6" ; note "ttaacagacaaaactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1701356 1701361 . - . misc_feature unknown_1474 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1701406 1701419 . - . misc_feature unknown_1475 ; colour "6" ; note "ttaacacttgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1701444 1701449 . - . misc_feature unknown_1476 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1701600 1701657 . - . mRNA SPAC824.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC824.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 1701860 1702271 . + . misc_RNA SPNCRNA.177 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.177" ; synonym "SPNG303" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_feature 1702208 1704243 . + . misc_feature unknown_1477 ; note "nominal overlap with cosmid SPAC664 and cosmid SPAC824" ;
chromosome1 GeneDB 3'-UTR 1702482 1703014 . - . mRNA SPAC664.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC664.01c" ; systematic_id "SPAC664.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1703015 1704001 . - . mRNA SPAC664.01c ; systematic_id "SPAC664.01c" ; colour "2" ; gene "swi6 ||| SPAC824.10c ||| SPAC664.01c" ; Alias "swi6" ; db_xref "SPD:14/14C10" ; synonym "SPAC824.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8200530; date=19700101 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, accumulation of non- coding outer repeat transcripts; cv=phenotype; date=20100318 ||| term=chromodomain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=human CBX1 and CBX3 and CBX5 ortholog; qualifier=predicted; date=20100826" ; GO "GO:0005721; centric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0031493; nucleosomal histone binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0072356; chromosome passenger complex localization to kinetochore
GO:0007535; donor selection
GO:0007533; mating type switching
GO:0007062; sister chromatid cohesion" ; primary_name "swi6" ; product "chromodomain protein Swi6" ;
chromosome1 GeneDB CDS 1703015 1704001 . - . mRNA SPAC664.01c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1704002 1704073 . - . mRNA SPAC664.01c ; Alias "swi6" ; ID "SPAC664.01c" ; systematic_id "SPAC664.01c" ; gene "swi6 ||| SPAC824.10c ||| SPAC664.01c" ; primary_name "swi6" ; note "mRNA from AU011088" ;
chromosome1 GeneDB tRNA 1704582 1704664 . + . tRNA SPATRNALYS.01 ; systematic_id "SPATRNALYS.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033417; CTT codon-amino acid adaptor activity" ; gene "SPATRNALYS.01" ; product "tRNA Lysine" ; note "tRNA Lys anticodon CTT, Cove score 75.47" ;
chromosome1 GeneDB intron 1704621 1704628 . + . intron SPATRNALYS.01 ; systematic_id "SPATRNALYS.01" ; note "intron tRNA Lys anticodon CTT" ;
chromosome1 GeneDB 3'-UTR 1704900 1704980 . - . mRNA SPAC664.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC664.02c" ; systematic_id "SPAC664.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1704981 1707080 . - . mRNA SPAC664.02c ; systematic_id "SPAC664.02c" ; colour "2" ; gene "arp8 ||| SPAC664.02c" ; Alias "arp8" ; db_xref "SPD:27/27H07" ; GO "GO:0005634; nucleus
GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR141C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "arp8" ; product "actin-like protein Arp8" ;
chromosome1 GeneDB CDS 1704981 1706291 . - . mRNA SPAC664.02c ; colour "2" ;
chromosome1 GeneDB CDS 1706359 1706568 . - . mRNA SPAC664.02c ; colour "2" ;
chromosome1 GeneDB CDS 1706691 1706879 . - . mRNA SPAC664.02c ; colour "2" ;
chromosome1 GeneDB CDS 1706928 1707080 . - . mRNA SPAC664.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 1706292 1706308 . - . misc_feature unknown_1478 ; colour "6" ; note "ctaattatattttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1706353 1706358 . - . misc_feature unknown_1479 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1706569 1706581 . - . misc_feature unknown_1480 ; colour "6" ; note "ctaattcttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1706685 1706690 . - . misc_feature unknown_1481 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1706880 1706895 . - . misc_feature unknown_1482 ; colour "6" ; note "ctaaaatgccttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1706922 1706927 . - . misc_feature unknown_1483 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1707079 1707322 . - . mRNA SPAC664.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC664.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1708807 1708821 . + . mRNA SPAC664.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC664.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1708822 1710229 . + . mRNA SPAC664.03 ; db_xref "SPD:21/21G04" ; systematic_id "SPAC664.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR279W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0016593; Cdc73/Paf1 complex
GO:0016571; histone methylation
GO:0016944; RNA polymerase II transcription elongation factor activity" ; gene "SPAC664.03" ; product "RNA polymerase II associated Paf1 complex (predicted)" ;
chromosome1 GeneDB CDS 1708822 1708824 . + . mRNA SPAC664.03 ; colour "7" ;
chromosome1 GeneDB CDS 1708859 1710229 . + . mRNA SPAC664.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 1708825 1708830 . + . misc_feature unknown_1484 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 1710230 1710292 . + . mRNA SPAC664.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC664.03" ; systematic_id "SPAC664.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1710502 1711067 . - . mRNA SPAC664.04c ; systematic_id "SPAC664.04c" ; colour "7" ; gene "rps1602 ||| rps16-2 ||| rps16 ||| SPAC664.04c" ; Alias "rps1602" ; db_xref "SPD:42/42C08" ; synonym "rps16-2 ||| rps16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL083C and YMR143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0042254; ribosome biogenesis" ; primary_name "rps1602" ; product "40S ribosomal protein S16 (predicted)" ;
chromosome1 GeneDB CDS 1710502 1710549 . - . mRNA SPAC664.04c ; colour "7" ;
chromosome1 GeneDB CDS 1710693 1711067 . - . mRNA SPAC664.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 1710550 1710563 . - . misc_feature unknown_1485 ; colour "6" ; note "ctaactgtttctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1710550 1710692 . - . intron SPAC664.04c ; Alias "rps1602" ; db_xref "SPD:42/42C08" ; systematic_id "SPAC664.04c" ; primary_name "rps1602" ; gene "rps1602 ||| rps16-2 ||| rps16 ||| SPAC664.04c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1710687 1710692 . - . misc_feature unknown_1486 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1711170 1711213 . + . mRNA SPAC664.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC664.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1711214 1711840 . + . mRNA SPAC664.05 ; systematic_id "SPAC664.05" ; colour "7" ; gene "rpl13 ||| SPAC664.05" ; Alias "rpl13" ; db_xref "SPD:07/07B05" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL082W and YMR142C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl13" ; product "60S ribosomal protein L13 (predicted)" ;
chromosome1 GeneDB CDS 1711214 1711840 . + . mRNA SPAC664.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1711841 1711940 . + . mRNA SPAC664.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC664.05" ; systematic_id "SPAC664.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1712817 1713783 . + . mRNA SPAC664.06 ; systematic_id "SPAC664.06" ; colour "7" ; gene "rpl703 ||| rpl7 ||| SPAC664.06" ; Alias "rpl703" ; db_xref "SPD:13/13G06" ; obsolete_name "rpl7-3" ; synonym "rpl7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL076C and YPL198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=warning, ncRNA in intron; cv=warning; date=20100217" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; primary_name "rpl703" ; product "60S ribosomal protein L7 (predicted)" ;
chromosome1 GeneDB CDS 1712817 1712939 . + . mRNA SPAC664.06 ; colour "7" ;
chromosome1 GeneDB CDS 1713157 1713783 . + . mRNA SPAC664.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 1712940 1712945 . + . misc_feature unknown_1487 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB snoRNA 1712996 1713071 . + . snoRNA SPSNORNA.31 ; systematic_id "SPSNORNA.31" ; gene "SPSNORNA.31" ; db_xref "EMBL:U26014" ; Alias "snoR39a" ; synonym "snoR39 ||| snR39" ; controlled_curation "term=warning, ncRNA in intron; cv=warning; date=20100217" ; primary_name "snoR39a" ; product "small nucleolar RNA snR39" ;
chromosome1 GeneDB misc_feature 1713142 1713156 . + . misc_feature unknown_1488 ; colour "6" ; note "ctaattttactccag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1713784 1713867 . + . mRNA SPAC664.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC664.06" ; systematic_id "SPAC664.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1714090 1715536 . - . mRNA SPAC664.07c ; systematic_id "SPAC664.07c" ; colour "2" ; gene "rad9 ||| SPAC664.07c" ; Alias "rad9" ; db_xref "SPD:23/23C09" ; GO "GO:0030896; checkpoint clamp complex
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0000077; DNA damage checkpoint
GO:0005515; protein binding
GO:0031573; intra-S DNA damage checkpoint" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=tudor domain; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=orthologous to S. cerevisiae YPL194W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rad9" ; product "checkpoint clamp complex protein Rad9" ;
chromosome1 GeneDB CDS 1714090 1714317 . - . mRNA SPAC664.07c ; colour "2" ;
chromosome1 GeneDB CDS 1714374 1714987 . - . mRNA SPAC664.07c ; colour "2" ;
chromosome1 GeneDB CDS 1715045 1715378 . - . mRNA SPAC664.07c ; colour "2" ;
chromosome1 GeneDB CDS 1715432 1715536 . - . mRNA SPAC664.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 1714318 1714329 . - . misc_feature unknown_1489 ; colour "6" ; note "ttaactttatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1714318 1714373 . - . intron SPAC664.07c ; Alias "rad9" ; db_xref "SPD:23/23C09" ; systematic_id "SPAC664.07c" ; primary_name "rad9" ; gene "rad9 ||| SPAC664.07c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1714368 1714373 . - . misc_feature unknown_1490 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1714988 1715006 . - . misc_feature unknown_1491 ; colour "6" ; note "ctaacgtttattcatcaag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1714988 1715044 . - . intron SPAC664.07c ; Alias "rad9" ; db_xref "SPD:23/23C09" ; systematic_id "SPAC664.07c" ; primary_name "rad9" ; gene "rad9 ||| SPAC664.07c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1715039 1715044 . - . misc_feature unknown_1492 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1715379 1715391 . - . misc_feature unknown_1493 ; colour "6" ; note "ctaattggtaaag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1715379 1715431 . - . intron SPAC664.07c ; Alias "rad9" ; db_xref "SPD:23/23C09" ; systematic_id "SPAC664.07c" ; primary_name "rad9" ; gene "rad9 ||| SPAC664.07c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1715426 1715431 . - . misc_feature unknown_1494 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1715535 1715680 . - . mRNA SPAC664.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC664.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1716010 1716212 . - . mRNA SPAC664.08c ; ID "SPAC664.08c" ; db_xref "SPD:24/24D11" ; systematic_id "SPAC664.08c" ; gene "SPAC664.08c" ; note "mRNA from AU008348" ;
chromosome1 GeneDB CDS_parts 1716213 1717720 . - . mRNA SPAC664.08c ; db_xref "SPD:24/24D11" ; systematic_id "SPAC664.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR299W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005730; nucleolus
GO:0042254; ribosome biogenesis and assembly" ; gene "SPAC664.08c" ; product "traub family protein involved in ribosome biogenesis (predicted)" ;
chromosome1 GeneDB CDS 1716213 1717413 . - . mRNA SPAC664.08c ; colour "7" ;
chromosome1 GeneDB CDS 1717475 1717574 . - . mRNA SPAC664.08c ; colour "7" ;
chromosome1 GeneDB CDS 1717621 1717668 . - . mRNA SPAC664.08c ; colour "7" ;
chromosome1 GeneDB CDS 1717711 1717720 . - . mRNA SPAC664.08c ; colour "7" ;
chromosome1 GeneDB misc_feature 1717414 1717434 . - . misc_feature unknown_1495 ; colour "6" ; note "ctaatgtttcatattttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1717469 1717474 . - . misc_feature unknown_1496 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1717575 1717587 . - . misc_feature unknown_1497 ; colour "6" ; note "ctcacataaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1717615 1717620 . - . misc_feature unknown_1498 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1717669 1717683 . - . misc_feature unknown_1499 ; colour "6" ; note "ctaataaatctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1717705 1717710 . - . misc_feature unknown_1500 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1717719 1717770 . - . mRNA SPAC664.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC664.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1719145 1719495 . + . mRNA SPAC664.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC664.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1719496 1721388 . + . mRNA SPAC664.09 ; systematic_id "SPAC664.09" ; colour "2" ; gene "ggt1 ||| SPAC664.09" ; Alias "ggt1" ; db_xref "SPD:26/26E05" ; GO "GO:0003840; gamma-glutamyltransferase activity
GO:0045454; cell redox homeostasis
GO:0006995; cellular response to nitrogen starvation
GO:0006995; cellular response to nitrogen starvation
GO:0006751; glutathione catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, glutathionuria; date=20060724 ||| term=orthologous to S. cerevisiae YLR299W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ggt1" ; product "gamma-glutamyltranspeptidase Ggt1" ; EC_number "2.3.2.2" ;
chromosome1 GeneDB CDS 1719496 1721388 . + . mRNA SPAC664.09 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1721389 1721677 . + . mRNA SPAC664.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC664.09" ; systematic_id "SPAC664.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1721953 1721994 . + . mRNA SPAC664.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC664.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1721995 1724493 . + . mRNA SPAC664.10 ; systematic_id "SPAC664.10" ; colour "2" ; gene "klp2 ||| SPAC664.10" ; note "first exon possibly incorrect; may use MKLNFSNTLQYPHVFGEKEK as alternative first exon" ; Alias "klp2" ; db_xref "SPD:29/29A08" ; GO "GO:0005737; cytoplasm
GO:0000778; kinetochore
GO:0005875; microtubule associated complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0003777; microtubule motor activity
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0030951; establishment and/or maintenance of microtubule cytoskeleton polarity
GO:0000741; karyogamy
GO:0051012; microtubule sliding
GO:0031534; minus-end directed microtubule sliding
GO:0000022; mitotic spindle elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kinesin Kar3 subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11694582; date=19700101 ||| term=orthologous to S. cerevisiae YPR141C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201" ; primary_name "klp2" ; product "kinesin-like protein Klp2" ;
chromosome1 GeneDB CDS 1721995 1722024 . + . mRNA SPAC664.10 ; colour "2" ;
chromosome1 GeneDB CDS 1722070 1724493 . + . mRNA SPAC664.10 ; colour "2" ;
chromosome1 GeneDB misc_feature 1722025 1722030 . + . misc_feature unknown_1501 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1722051 1722069 . + . misc_feature unknown_1502 ; colour "6" ; note "ttaatttttttccttatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1724494 1724813 . + . mRNA SPAC664.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC664.10" ; systematic_id "SPAC664.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1725858 1726008 . + . mRNA SPAC664.11 ; Alias "ssc1" ; ID "SPAC664.11" ; systematic_id "SPAC664.11" ; primary_name "ssc1" ; gene "ssc1 ||| ssp1 ||| SPAC664.11" ; note "mRNA from SPHSP70" ;
chromosome1 GeneDB CDS_parts 1726009 1728033 . + . mRNA SPAC664.11 ; systematic_id "SPAC664.11" ; colour "2" ; gene "ssc1 ||| ssp1 ||| SPAC664.11" ; Alias "ssc1" ; db_xref "SPD:37/37B12" ; synonym "ssp1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR045C and YEL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0030150; protein import into mitochondrial matrix
GO:0016887; ATPase activity
GO:0030234; enzyme regulator activity
GO:0006457; protein folding
GO:0001405; presequence translocase-associated import motor
GO:0033554; cellular response to stress
GO:0005524; ATP binding" ; primary_name "ssc1" ; product "mitochondrial heat shock protein Hsp70" ;
chromosome1 GeneDB CDS 1726009 1728033 . + . mRNA SPAC664.11 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1728034 1728189 . + . mRNA SPAC664.11 ; Alias "ssc1" ; ID "SPAC664.11" ; db_xref "SPD:37/37B12" ; systematic_id "SPAC664.11" ; primary_name "ssc1" ; gene "ssc1 ||| ssp1 ||| SPAC664.11" ; note "mRNA from SPHSP70" ;
chromosome1 GeneDB CDS_parts 1728569 1728894 . - . mRNA SPAC664.12c ; db_xref "SPD:01/01G05" ; systematic_id "SPAC664.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR379C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SDHAF1 ortholog; date=20100718 ||| term=disease associated, infantile leukoencephalopathy; date=20100718 ||| term=ACN9 family; date=20100820" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0016226; iron-sulfur cluster biosynthesis
GO:0005759; mitochondrial matrix
GO:0034553; mitochondrial respriatory chain complex II assembly" ; gene "SPAC664.12c" ; product "mitochondrial succinate dehydrogenase assembly factor 1 (predicted)" ;
chromosome1 GeneDB CDS 1728569 1728730 . - . mRNA SPAC664.12c ; colour "7" ;
chromosome1 GeneDB CDS 1728817 1728894 . - . mRNA SPAC664.12c ; colour "7" ;
chromosome1 GeneDB misc_feature 1728731 1728745 . - . misc_feature unknown_1503 ; colour "6" ; note "ctaactaatacgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1728811 1728816 . - . misc_feature unknown_1504 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 1729505 1729858 . + . mRNA SPAC664.13 ; db_xref "SPD:02/02C08" ; systematic_id "SPAC664.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC664.13" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1729505 1729858 . + . mRNA SPAC664.13 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 1731083 1731626 . + . mRNA SPAC664.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC664.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1731627 1733165 . + . mRNA SPAC664.14 ; systematic_id "SPAC664.14" ; colour "2" ; gene "amt2 ||| SPAC664.14" ; Alias "amt2" ; db_xref "SPD:24/24H09" ; GO "GO:0005887; integral to plasma membrane
GO:0008519; ammonium transporter activity
GO:0015200; methylammonium transporter activity
GO:0072488; ammonium transmembrane transport
GO:0072499; methylammonium transmembrane transport
GO:0031670; cellular response to nutrient" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:16999738; date=20061024 ||| term=orthologous to S. cerevisiae YPR138C and YGR121C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "amt2" ; product "ammonium transporter Amt2" ;
chromosome1 GeneDB CDS 1731627 1733165 . + . mRNA SPAC664.14 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1733166 1733268 . + . mRNA SPAC664.14 ; Alias "amt2" ; ID "SPAC664.14" ; db_xref "SPD:24/24H09" ; systematic_id "SPAC664.14" ; primary_name "amt2" ; gene "amt2 ||| SPAC664.14" ; note "mRNA from AU013340" ;
chromosome1 GeneDB tRNA 1733764 1733838 . - . tRNA SPATRNALYS.02 ; systematic_id "SPATRNALYS.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033401; TTT codon-amino acid adaptor activity" ; gene "SPATRNALYS.02" ; product "tRNA Lysine" ; note "tRNA Lys anticodon TTT, Cove score 75.86" ;
chromosome1 GeneDB misc_feature 1734544 1735260 . + . misc_feature unknown_1505 ; note "nominal overlap with cosmid SPAC664 and cosmid SPACUNK12" ;
chromosome1 GeneDB 5'-UTR 1734600 1734992 . + . mRNA SPAC664.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC664.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1734993 1736948 . + . mRNA SPAC664.15 ; systematic_id "SPAC664.15" ; colour "7" ; gene "caf4 ||| SPAC664.15" ; Alias "caf4" ; obsolete_name "SPACUNK12.01 ||| SPAC25D11.02C" ; db_xref "SPD:37/37B02" ; GO "GO:0030014; CCR4-NOT complex
GO:0005741; mitochondrial outer membrane
GO:0051020; GTPase binding
GO:0006354; RNA elongation
GO:0000266; mitochondrial fission
GO:0000002; mitochondrial genome maintenance
GO:0006355; regulation of transcription, DNA- dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKR036C and YJL112W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "caf4" ; product "CCR4-Not complex subunit Caf4/Mdv1 (predicted)" ;
chromosome1 GeneDB CDS 1734993 1736948 . + . mRNA SPAC664.15 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1736949 1737187 . + . mRNA SPAC664.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC664.15" ; systematic_id "SPAC664.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1737453 1737831 . - . mRNA SPACUNK12.02c ; Alias "cmk1" ; ID "SPACUNK12.02c" ; db_xref "SPD:20/20A06" ; systematic_id "SPACUNK12.02c" ; primary_name "cmk1" ; gene "cmk1 ||| SPACUNK12.02c" ; note "mRNA from AF073893" ;
chromosome1 GeneDB CDS_parts 1737832 1739087 . - . mRNA SPACUNK12.02c ; systematic_id "SPACUNK12.02c" ; colour "2" ; gene "cmk1 ||| SPACUNK12.02c" ; Alias "cmk1" ; obsolete_name "SPAC25D11.02C" ; db_xref "SPD:20/20A06" ; GO "GO:0005524; ATP binding
GO:0004683; calcium- and calmodulin-dependent protein kinase activity
GO:0019722; calcium-mediated signaling
GO:0006468; protein amino acid phosphorylation
GO:0007346; regulation of mitotic cell cycle
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR014C and YOL016C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7812047; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "cmk1" ; product "calcium/calmodulin-dependent protein kinase Cmk1" ; EC_number "2.7.11.17" ;
chromosome1 GeneDB CDS 1737832 1738198 . - . mRNA SPACUNK12.02c ; colour "2" ;
chromosome1 GeneDB CDS 1738261 1738591 . - . mRNA SPACUNK12.02c ; colour "2" ;
chromosome1 GeneDB CDS 1738664 1738754 . - . mRNA SPACUNK12.02c ; colour "2" ;
chromosome1 GeneDB CDS 1738822 1738876 . - . mRNA SPACUNK12.02c ; colour "2" ;
chromosome1 GeneDB CDS 1738924 1739087 . - . mRNA SPACUNK12.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 1738199 1738214 . - . misc_feature unknown_1506 ; colour "6" ; note "ctaatactgtttatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1738199 1738260 . - . intron SPACUNK12.02c ; Alias "cmk1" ; db_xref "SPD:20/20A06" ; systematic_id "SPACUNK12.02c" ; primary_name "cmk1" ; gene "cmk1 ||| SPACUNK12.02c" ; note "Intron confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1738255 1738260 . - . misc_feature unknown_1507 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1738592 1738607 . - . misc_feature unknown_1508 ; colour "6" ; note "ctaacccttgaaacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1738592 1738663 . - . intron SPACUNK12.02c ; Alias "cmk1" ; db_xref "SPD:20/20A06" ; systematic_id "SPACUNK12.02c" ; primary_name "cmk1" ; gene "cmk1 ||| SPACUNK12.02c" ; note "Intron confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1738658 1738663 . - . misc_feature unknown_1509 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1738755 1738777 . - . misc_feature unknown_1510 ; colour "6" ; note "ctaacatgtttttggtggtatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1738755 1738821 . - . intron SPACUNK12.02c ; Alias "cmk1" ; db_xref "SPD:20/20A06" ; systematic_id "SPACUNK12.02c" ; primary_name "cmk1" ; gene "cmk1 ||| SPACUNK12.02c" ; note "Intron confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1738816 1738821 . - . misc_feature unknown_1511 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1738877 1738894 . - . misc_feature unknown_1512 ; colour "6" ; note "ctgaccaaattttcatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1738877 1738923 . - . intron SPACUNK12.02c ; Alias "cmk1" ; db_xref "SPD:20/20A06" ; systematic_id "SPACUNK12.02c" ; primary_name "cmk1" ; gene "cmk1 ||| SPACUNK12.02c" ; note "Intron confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1738918 1738923 . - . misc_feature unknown_1513 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1739088 1739328 . - . mRNA SPACUNK12.02c ; Alias "cmk1" ; ID "SPACUNK12.02c" ; systematic_id "SPACUNK12.02c" ; primary_name "cmk1" ; gene "cmk1 ||| SPACUNK12.02c" ; note "mRNA from AF073893" ;
chromosome1 GeneDB misc_feature 1740524 1740562 . + . misc_feature unknown_1514 ; note "nominal overlap with cosmid SPACUNK12 and cosmid SPAC105" ;
chromosome1 GeneDB 3'-UTR 1740543 1740615 . - . mRNA SPAC105.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC105.01c" ; systematic_id "SPAC105.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1740616 1743560 . - . mRNA SPAC105.01c ; systematic_id "SPAC105.01c" ; colour "7" ; gene "SPAC105.01c" ; Alias "kha1" ; db_xref "SPD:47/47E10" ; GO "GO:0015386; potassium:hydrogen antiporter activity
GO:0071805; potassium ion transmembrane transport
GO:0005886; plasma membrane
GO:0030007; potassium ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL094C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=name description, named from cerevisiae; db_xref=PMID:9428701; date=20100918" ; primary_name "kha1" ; product "potassium ion/proton antiporter Kha1 (predicted)" ;
chromosome1 GeneDB CDS 1740616 1743124 . - . mRNA SPAC105.01c ; colour "7" ;
chromosome1 GeneDB CDS 1743299 1743378 . - . mRNA SPAC105.01c ; colour "7" ;
chromosome1 GeneDB CDS 1743421 1743503 . - . mRNA SPAC105.01c ; colour "7" ;
chromosome1 GeneDB CDS 1743536 1743560 . - . mRNA SPAC105.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 1743125 1743139 . - . misc_feature unknown_1515 ; colour "6" ; note "ttaacagaacaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1743293 1743298 . - . misc_feature unknown_1516 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1743379 1743391 . - . misc_feature unknown_1517 ; colour "6" ; note "ataacaactttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1743415 1743420 . - . misc_feature unknown_1518 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1743504 1743518 . - . misc_feature unknown_1519 ; colour "6" ; note "ctaatccgctgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1743530 1743535 . - . misc_feature unknown_1520 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1743559 1743622 . - . mRNA SPAC105.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC105.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1744115 1744747 . - . mRNA SPAC105.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC105.02c" ; systematic_id "SPAC105.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1744748 1745597 . - . mRNA SPAC105.02c ; db_xref "SPD:43/43D12" ; systematic_id "SPAC105.02c" ; GO "GO:0007127; meiosis I
GO:0007126; meiosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070321 ||| term=species distribution, conserved in Eukaryotes; date=20070321 ||| term=species distribution, conserved in Vertebrates; date=20070321 ||| term=species distribution, conserved in Metazoa; date=20070321 ||| term=species distribution, conserved in Eukaryotes only; date=20070321 ||| term=orthologous to S. cerevisiae YGL242C; date=19700101" ; colour "10" ; gene "SPAC105.02c" ; product "ankyrin repeat protein, implicated in meiosis" ;
chromosome1 GeneDB CDS 1744748 1744950 . - . mRNA SPAC105.02c ; colour "10" ;
chromosome1 GeneDB CDS 1745235 1745519 . - . mRNA SPAC105.02c ; colour "10" ;
chromosome1 GeneDB CDS 1745573 1745597 . - . mRNA SPAC105.02c ; colour "10" ;
chromosome1 GeneDB misc_feature 1744951 1744971 . - . misc_feature unknown_1521 ; colour "6" ; note "ctaactattgtttcattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1745229 1745234 . - . misc_feature unknown_1522 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1745520 1745534 . - . misc_feature unknown_1523 ; colour "6" ; note "ctaacgattttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1745567 1745572 . - . misc_feature unknown_1524 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB tRNA 1746464 1746547 . + . tRNA SPATRNATYR.01 ; systematic_id "SPATRNATYR.01" ; GO "GO:0006414; translational elongation
GO:0033451; GTA codon-amino acid adaptor activity
GO:0005737; cytoplasm" ; gene "SPATRNATYR.01" ; product "tRNA Tyrosine" ; note "tRNA Tyr anticodon GTA, Cove score 40.71" ;
chromosome1 GeneDB 3'-UTR 1746758 1746917 . - . mRNA SPAC105.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC105.03c" ; systematic_id "SPAC105.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1746918 1749044 . - . mRNA SPAC105.03c ; db_xref "SPD:46/46E11" ; systematic_id "SPAC105.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YIR023W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC105.03c" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB CDS 1746918 1749044 . - . mRNA SPAC105.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 1748921 1749522 . + . misc_feature unknown_1525 ; note "nominal overlap with cosmid SPAC17A5 and cosmid SPAC105" ;
chromosome1 GeneDB 5'-UTR 1749043 1749122 . - . mRNA SPAC105.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC105.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1749891 1750092 . + . mRNA SPAC17A5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1750093 1752993 . + . mRNA SPAC17A5.01 ; systematic_id "SPAC17A5.01" ; colour "7" ; gene "SPAC17A5.01 ||| pex6" ; Alias "pex6" ; db_xref "SPD:29/29F12" ; GO "GO:0016887; ATPase activity
GO:0007031; peroxisome organization and biogenesis
GO:0005777; peroxisome
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Zellweger syndrome; date=20060920 ||| term=disease associated, peroxisomal defects; date=20080601 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YNL329C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pex6" ; product "peroxin-6 (predicted)" ;
chromosome1 GeneDB CDS 1750093 1751448 . + . mRNA SPAC17A5.01 ; colour "7" ;
chromosome1 GeneDB CDS 1751503 1752993 . + . mRNA SPAC17A5.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 1751449 1751454 . + . misc_feature unknown_1526 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1751488 1751502 . + . misc_feature unknown_1527 ; colour "6" ; note "ctaactgttttctag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 1752994 1753080 . + . mRNA SPAC17A5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A5.01" ; systematic_id "SPAC17A5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1753207 1753659 . - . mRNA SPAC17A5.18c ; systematic_id "SPAC17A5.18c" ; colour "2" ; gene "rec25 ||| mug19 ||| SPAC17A5.18c" ; Alias "rec25" ; db_xref "SPD:51/51H10" ; synonym "mug19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination" ; primary_name "rec25" ; product "meiotic recombination protein Rec25" ;
chromosome1 GeneDB CDS 1753207 1753659 . - . mRNA SPAC17A5.18c ; colour "2" ;
chromosome1 GeneDB CDS_parts 1754033 1755638 . - . mRNA SPAC17A5.02c ; systematic_id "SPAC17A5.02c" ; colour "2" ; gene "dbr1 ||| SPAC17A5.02c" ; Alias "dbr1" ; db_xref "SPD:40/40F04" ; GO "GO:0005634; nucleus
GO:0008419; RNA lariat debranching enzyme activity
GO:0031070; intronic snoRNA processing
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0043144; snoRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10982890; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9001235; date=20100705 ||| term=complementation, functionally complemented by human DRB1; db_xref=PMID:10982890; cv=complementation; date=19700101 ||| term=orthologous to S. cerevisiae YKL149C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure conflict; date=20100303 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; primary_name "dbr1" ; product "RNA lariat debranching enzyme Dbr1" ; EC_number "3.1.-.-" ;
chromosome1 GeneDB CDS 1754033 1754145 . - . mRNA SPAC17A5.02c ; colour "2" ;
chromosome1 GeneDB CDS 1754186 1754310 . - . mRNA SPAC17A5.02c ; colour "2" ;
chromosome1 GeneDB CDS 1754350 1755118 . - . mRNA SPAC17A5.02c ; colour "2" ;
chromosome1 GeneDB CDS 1755164 1755285 . - . mRNA SPAC17A5.02c ; colour "2" ;
chromosome1 GeneDB CDS 1755331 1755638 . - . mRNA SPAC17A5.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 1754311 1754324 . - . misc_feature unknown_1528 ; colour "6" ; note "ctgacgtttgatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1754344 1754349 . - . misc_feature unknown_1529 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1755119 1755132 . - . misc_feature unknown_1530 ; colour "6" ; note "gtaacatataatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1755158 1755163 . - . misc_feature unknown_1531 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1755286 1755306 . - . misc_feature unknown_1532 ; colour "6" ; note "ctattaacaatgcgccaacag, splice branch and acceptor se quence" ;
chromosome1 GeneDB misc_feature 1755325 1755330 . - . misc_feature unknown_1533 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB promoter 1756018 1756027 . + . promoter SPAC17A5.03 ; Alias "rpl301" ; primary_name "rpl301" ; gene "rpl301 ||| SPAC17A5.03" ; note "Homol E box" ;
chromosome1 GeneDB promoter 1756036 1756043 . + . promoter SPAC17A5.03 ; Alias "rpl301" ; primary_name "rpl301" ; gene "rpl301 ||| SPAC17A5.03" ; note "Homol D box" ;
chromosome1 GeneDB CDS_parts 1756109 1757275 . + . mRNA SPAC17A5.03 ; systematic_id "SPAC17A5.03" ; colour "2" ; gene "rpl301 ||| rpl3-1 ||| rpl3 ||| SPAC17A5.03" ; note "identical to rpl302 except AA78,V-I PMID:8181745" ; Alias "rpl301" ; db_xref "SPD:18/18D09" ; synonym "rpl3-1 ||| rpl3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0000027; ribosomal large subunit assembly and maintenance" ; primary_name "rpl301" ; product "60S ribosomal protein L3" ;
chromosome1 GeneDB CDS 1756109 1757275 . + . mRNA SPAC17A5.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1757276 1757315 . + . mRNA SPAC17A5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A5.03" ; systematic_id "SPAC17A5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1757593 1759202 . - . mRNA SPAC17A5.04c ; systematic_id "SPAC17A5.04c" ; colour "2" ; gene "mde10 ||| SPAC17A5.04c ||| mug139" ; Alias "mde10" ; db_xref "SPD:25/25G12" ; synonym "mug139" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:14871934; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; db_xref=PMID:14871934; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; GO "GO:0008237; metallopeptidase activity
GO:0008270; zinc ion binding
GO:0005619; spore wall (sensu Fungi)
GO:0005619; spore wall (sensu Fungi)
GO:0030476; spore wall assembly (sensu Fungi)
GO:0005789; endoplasmic reticulum membrane" ; primary_name "mde10" ; product "spore wall assembly ADAM family peptidase Mde10" ;
chromosome1 GeneDB CDS 1757593 1758185 . - . mRNA SPAC17A5.04c ; colour "2" ;
chromosome1 GeneDB CDS 1758257 1759202 . - . mRNA SPAC17A5.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 1758186 1758205 . - . misc_feature unknown_1534 ; colour "6" ; note "ctaaccattatttaag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 1758251 1758256 . - . misc_feature unknown_1535 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_RNA 1759484 1760333 . + . misc_RNA SPNCRNA.556 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.556" ; synonym "SPNG2AF11" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB CDS_parts 1759628 1760371 . - . mRNA SPAC17A5.05c ; db_xref "SPD:09/09A07" ; systematic_id "SPAC17A5.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to C. neoformans CNBH2410; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "10" ; gene "SPAC17A5.05c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 1759628 1760371 . - . mRNA SPAC17A5.05c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 1761552 1761786 . + . mRNA SPAC17A5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1761787 1764201 . + . mRNA SPAC17A5.06 ; systematic_id "SPAC17A5.06" ; colour "2" ; gene "ptr8 ||| SPAC17A5.06" ; Alias "ptr8" ; obsolete_name "ercc3sp" ; db_xref "SPD:28/28F10" ; GO "GO:0000112; nucleotide-excision repair factor 3 complex
GO:0005634; nucleus
GO:0005675; transcription factor TFIIH complex
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0016251; general RNA polymerase II transcription factor activity
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0034644; cellular response to UV
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0006283; transcription-coupled nucleotide- excision repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17212653; date=20070115 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=human ERCC3 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YIL143C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ptr8" ; product "transcription factor TFIIH complex ERCC-3 subunit" ;
chromosome1 GeneDB CDS 1761787 1764201 . + . mRNA SPAC17A5.06 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1764202 1764319 . + . mRNA SPAC17A5.06 ; Alias "ptr8" ; ID "SPAC17A5.06" ; db_xref "SPD:28/28F10" ; systematic_id "SPAC17A5.06" ; primary_name "ptr8" ; gene "ptr8 ||| SPAC17A5.06" ; note "mRNA from AU013561" ;
chromosome1 GeneDB CDS_parts 1764336 1766695 . - . mRNA SPAC17A5.07c ; systematic_id "SPAC17A5.07c" ; colour "7" ; gene "ulp2 ||| SPAC17A5.07c" ; Alias "ulp2" ; db_xref "SPD:38/38C10" ; GO "GO:0016926; protein desumoylation
GO:0016929; SUMO-specific protease activity
GO:0005634; nucleus
GO:0030261; chromosome condensation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ulp2" ; product "SUMO deconjugating cysteine peptidase Ulp2 (predicted)" ;
chromosome1 GeneDB CDS 1764336 1764792 . - . mRNA SPAC17A5.07c ; colour "7" ;
chromosome1 GeneDB CDS 1764877 1765113 . - . mRNA SPAC17A5.07c ; colour "7" ;
chromosome1 GeneDB CDS 1765168 1765272 . - . mRNA SPAC17A5.07c ; colour "7" ;
chromosome1 GeneDB CDS 1765342 1766188 . - . mRNA SPAC17A5.07c ; colour "7" ;
chromosome1 GeneDB CDS 1766337 1766644 . - . mRNA SPAC17A5.07c ; colour "7" ;
chromosome1 GeneDB CDS 1766691 1766695 . - . mRNA SPAC17A5.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 1764793 1764807 . - . misc_feature unknown_1536 ; colour "6" ; note "ctaagttaattatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1764871 1764876 . - . misc_feature unknown_1537 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1765114 1765129 . - . misc_feature unknown_1538 ; colour "6" ; note "ctaatgggtaatatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1765162 1765167 . - . misc_feature unknown_1539 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1765273 1765290 . - . misc_feature unknown_1540 ; colour "6" ; note "ttaacctcaaaaatttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1765336 1765341 . - . misc_feature unknown_1541 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1766189 1766201 . - . misc_feature unknown_1542 ; colour "6" ; note "ctactttgtttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1766331 1766336 . - . misc_feature unknown_1543 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1766645 1766659 . - . misc_feature unknown_1544 ; colour "6" ; note "ctaactatttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1766685 1766690 . - . misc_feature unknown_1545 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1766694 1766721 . - . mRNA SPAC17A5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1767787 1768419 . + . mRNA SPAC17A5.08 ; db_xref "SPD:07/07C03" ; systematic_id "SPAC17A5.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL007C and YOR016C and YDL018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle" ; gene "SPAC17A5.08" ; product "COPII-coated vesicle component Erp2/3/4 (predicted)" ;
chromosome1 GeneDB CDS 1767787 1768419 . + . mRNA SPAC17A5.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1768420 1768593 . + . mRNA SPAC17A5.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A5.08" ; systematic_id "SPAC17A5.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1768811 1769087 . - . mRNA SPAC17A5.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A5.09c" ; systematic_id "SPAC17A5.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1769088 1770020 . - . mRNA SPAC17A5.09c ; systematic_id "SPAC17A5.09c" ; colour "7" ; gene "SPAC17A5.09c" ; note "conserved WDE*N.*MK**EP*TP[FY]" ; db_xref "SPD:13/13A08" ; GO "GO:0019888; protein phosphatase regulator activity
GO:0035304; regulation of protein amino acid dephosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR311C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "protein phosphatase regulatory subunit Glc9 (predicted)" ;
chromosome1 GeneDB CDS 1769088 1770020 . - . mRNA SPAC17A5.09c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1770019 1770077 . - . mRNA SPAC17A5.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A5.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1770131 1770190 . + . mRNA SPAC17A5.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A5.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1770191 1770865 . + . mRNA SPAC17A5.10 ; db_xref "SPD:07/07G08" ; systematic_id "SPAC17A5.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR268C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC17A5.10" ; product "conserved fungal protein" ; note "possily DNAJ needs checking**" ;
chromosome1 GeneDB CDS 1770191 1770865 . + . mRNA SPAC17A5.10 ; colour "10" ;
chromosome1 GeneDB tRNA 1772296 1772369 . + . tRNA SPATRNAILE.01 ; systematic_id "SPATRNAILE.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033441; AAT codon-amino acid adaptor activity" ; gene "SPATRNAILE.01" ; product "tRNA Isoleucine" ; note "tRNA Ile anticodon AAT, Cove score 63.37" ;
chromosome1 GeneDB CDS_parts 1772925 1774203 . + . mRNA SPAC17A5.11 ; systematic_id "SPAC17A5.11" ; colour "2" ; db_xref "SPD:20/20E02" ; Alias "rec12" ; synonym "spo11" ; GO "GO:0000228; nuclear chromosome
GO:0005524; ATP binding
GO:0003677; DNA binding
GO:0016889; endodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0045143; homologous chromosome segregation
GO:0042138; meiotic DNA double-strand break formation
GO:0007131; meiotic recombination
GO:0045144; meiotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:8005432; date=19700101 ||| term=orthologous to S. cerevisiae YHL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "rec12" ; product "endonuclease Rec12" ;
chromosome1 GeneDB CDS 1772925 1773205 . + . mRNA SPAC17A5.11 ; colour "2" ;
chromosome1 GeneDB CDS 1773264 1773372 . + . mRNA SPAC17A5.11 ; colour "2" ;
chromosome1 GeneDB CDS 1773423 1773500 . + . mRNA SPAC17A5.11 ; colour "2" ;
chromosome1 GeneDB CDS 1773565 1773693 . + . mRNA SPAC17A5.11 ; colour "2" ;
chromosome1 GeneDB CDS 1773763 1774203 . + . mRNA SPAC17A5.11 ; colour "2" ;
chromosome1 GeneDB misc_feature 1773206 1773211 . + . misc_feature unknown_1546 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB intron 1773206 1773263 . + . intron SPAC17A5.11 ; Alias "rec12" ; db_xref "EMBL:AF195027 ||| SPD:20/20E02" ; systematic_id "SPAC17A5.11" ; primary_name "rec12" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1773248 1773263 . + . misc_feature unknown_1547 ; colour "6" ; note "ctaattacatttgcag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 1773373 1773378 . + . misc_feature unknown_1548 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1773373 1773422 . + . intron SPAC17A5.11 ; Alias "rec12" ; db_xref "EMBL:AF195027 ||| SPD:20/20E02" ; systematic_id "SPAC17A5.11" ; primary_name "rec12" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1773408 1773422 . + . misc_feature unknown_1549 ; colour "6" ; note "ttaatttgatcttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1773501 1773506 . + . misc_feature unknown_1550 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB intron 1773501 1773564 . + . intron SPAC17A5.11 ; Alias "rec12" ; db_xref "EMBL:AF195027 ||| SPD:20/20E02" ; systematic_id "SPAC17A5.11" ; primary_name "rec12" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1773539 1773564 . + . misc_feature unknown_1551 ; colour "6" ; note "ctaactaagaattttactaaatacag, splice branch and accept or sequence" ;
chromosome1 GeneDB misc_feature 1773694 1773699 . + . misc_feature unknown_1552 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1773694 1773762 . + . intron SPAC17A5.11 ; Alias "rec12" ; db_xref "EMBL:AF195027 ||| SPD:20/20E02" ; systematic_id "SPAC17A5.11" ; primary_name "rec12" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1773742 1773762 . + . misc_feature unknown_1553 ; colour "6" ; note "ctaactaattgcttgtaacag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 1774258 1776351 . + . mRNA SPAC17A5.12 ; systematic_id "SPAC17A5.12" ; colour "2" ; gene "ucp7 ||| SPAC17A5.12" ; note "possibly needs N-terminal truncating" ; Alias "ucp7" ; db_xref "SPD:27/27G12" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0030544; Hsp70 protein binding
GO:0031593; polyubiquitin binding
GO:0043130; ubiquitin binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDR320C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ucp7" ; product "UBA/TPR/DNAJ domain protein Ucp7" ;
chromosome1 GeneDB CDS 1774258 1776351 . + . mRNA SPAC17A5.12 ; colour "2" ;
chromosome1 GeneDB CDS_parts 1776500 1777371 . + . mRNA SPAC17A5.13 ; db_xref "SPD:43/43E03" ; systematic_id "SPAC17A5.13" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0003934; GTP cyclohydrolase I activity
GO:0009396; folic acid and derivative biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR267C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC17A5.13" ; product "GTP cyclohydrolase (predicted)" ; EC_number "3.5.4.16" ;
chromosome1 GeneDB CDS 1776500 1776608 . + . mRNA SPAC17A5.13 ; colour "7" ;
chromosome1 GeneDB CDS 1776662 1776957 . + . mRNA SPAC17A5.13 ; colour "7" ;
chromosome1 GeneDB CDS 1777069 1777371 . + . mRNA SPAC17A5.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 1776609 1776614 . + . misc_feature unknown_1554 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1776648 1776661 . + . misc_feature unknown_1555 ; colour "6" ; note "ctaataccaattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1776958 1776963 . + . misc_feature unknown_1556 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1777054 1777068 . + . misc_feature unknown_1557 ; colour "6" ; note "ctaacattattgtag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 5'-UTR 1778493 1778548 . + . mRNA SPAC17A5.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A5.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1778549 1782623 . + . mRNA SPAC17A5.14 ; systematic_id "SPAC17A5.14" ; colour "2" ; gene "exo2 ||| SPAC17A5.14" ; Alias "exo2" ; db_xref "SPD:30/30F03" ; GO "GO:0000932; cytoplasmic mRNA processing body
GO:0051908; double-stranded DNA specific 5'-3' exodeoxyribonuclease activity
GO:0000287; magnesium ion binding
GO:0004523; ribonuclease H activity
GO:0004540; ribonuclease activity
GO:0045145; single-stranded DNA specific 5'-3' exodeoxyribonuclease activity
GO:0006364; 35S primary transcript processing
GO:0006402; mRNA catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8781170; date=20070219 ||| term=phenotype, sensitive to caffeine; db_xref=PMID:8781170; cv=phenotype; date=20050413 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:8781170; date=20100806 ||| term=orthologous to S. cerevisiae YGL173C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "exo2" ; product "exonuclease II Exo2" ; EC_number "3.1.11.-" ;
chromosome1 GeneDB CDS 1778549 1778563 . + . mRNA SPAC17A5.14 ; colour "2" ;
chromosome1 GeneDB CDS 1778602 1778669 . + . mRNA SPAC17A5.14 ; colour "2" ;
chromosome1 GeneDB CDS 1778720 1782623 . + . mRNA SPAC17A5.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 1778564 1778569 . + . misc_feature unknown_1558 ; colour "6" ; note "gttgtt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1778591 1778601 . + . misc_feature unknown_1559 ; colour "6" ; note "ttaacaattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1778670 1778675 . + . misc_feature unknown_1560 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1778707 1778719 . + . misc_feature unknown_1561 ; colour "6" ; note "ctaattgaaatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 1782624 1782670 . + . mRNA SPAC17A5.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A5.14" ; systematic_id "SPAC17A5.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1782880 1782934 . - . mRNA SPAC17A5.15c ; ID "SPAC17A5.15c" ; db_xref "SPD:37/37E12" ; systematic_id "SPAC17A5.15c" ; gene "SPAC17A5.15c" ; note "mRNA from AU013934" ;
chromosome1 GeneDB CDS_parts 1782935 1785085 . - . mRNA SPAC17A5.15c ; systematic_id "SPAC17A5.15c" ; colour "7" ; gene "SPAC17A5.15c" ; note "Probably cytoplasmic as the mitochondrial glutamate- tRNA ligase has been identified (SPAPB1A10.11C)" ; db_xref "KEGG:MAP00251; ||| KEGG:MAP00860; ||| KEGG:MAP00970; ||| SPD:37/37E12" ; GO "GO:0006424; glutamyl-tRNA aminoacylation
GO:0004818; glutamate-tRNA ligase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL245W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "glutamate-tRNA ligase (predicted)" ; EC_number "6.1.1.17" ;
chromosome1 GeneDB CDS 1782935 1785085 . - . mRNA SPAC17A5.15c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1785086 1785113 . - . mRNA SPAC17A5.15c ; ID "SPAC17A5.15c" ; systematic_id "SPAC17A5.15c" ; gene "SPAC17A5.15c" ; note "mRNA from AU007805" ;
chromosome1 GeneDB 5'-UTR 1786412 1786437 . + . mRNA SPAC17A5.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A5.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1786438 1789692 . + . mRNA SPAC17A5.16 ; systematic_id "SPAC17A5.16" ; colour "2" ; gene "SPAC17A5.16" ; db_xref "SPD:48/48B06" ; Alias "ftp105" ; GO "GO:0005515; protein binding
GO:0034613; cellular protein locaization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human c17orf28 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20091019 ||| term=orthologous to S. cerevisiae YLR436C; date=19700101 ||| term=name description, ubp Five interacting potential Transmembrane Protein; cv=name_description; date=20100420 ||| term=localization target is Ubp5; db_xref=PMID:20838651; date=20101001" ; primary_name "ftp105" ; product "Ubp5 interacting protein Ftp105" ; reserved_name "ftp105" ;
chromosome1 GeneDB CDS 1786438 1786457 . + . mRNA SPAC17A5.16 ; colour "2" ;
chromosome1 GeneDB CDS 1786500 1786542 . + . mRNA SPAC17A5.16 ; colour "2" ;
chromosome1 GeneDB CDS 1786605 1786637 . + . mRNA SPAC17A5.16 ; colour "2" ;
chromosome1 GeneDB CDS 1786706 1787352 . + . mRNA SPAC17A5.16 ; colour "2" ;
chromosome1 GeneDB CDS 1787451 1787658 . + . mRNA SPAC17A5.16 ; colour "2" ;
chromosome1 GeneDB CDS 1787715 1788092 . + . mRNA SPAC17A5.16 ; colour "2" ;
chromosome1 GeneDB CDS 1788192 1788446 . + . mRNA SPAC17A5.16 ; colour "2" ;
chromosome1 GeneDB CDS 1788499 1789692 . + . mRNA SPAC17A5.16 ; colour "2" ;
chromosome1 GeneDB misc_feature 1786458 1786463 . + . misc_feature unknown_1562 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1786488 1786499 . + . misc_feature unknown_1563 ; colour "6" ; note "ctaactgtttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1786543 1786548 . + . misc_feature unknown_1564 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1786592 1786604 . + . misc_feature unknown_1565 ; colour "6" ; note "ctaattctagtag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 1786638 1786643 . + . misc_feature unknown_1566 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1786678 1786705 . + . misc_feature unknown_1567 ; colour "6" ; note "ctaatgtattcgtttttatgtttattag, splice branch and acce ptor sequence" ;
chromosome1 GeneDB misc_feature 1787353 1787358 . + . misc_feature unknown_1568 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1787435 1787450 . + . misc_feature unknown_1569 ; colour "6" ; note "ctaatcacttttgcag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 1787659 1787664 . + . misc_feature unknown_1570 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1787699 1787714 . + . misc_feature unknown_1571 ; colour "6" ; note "ctaacttagtttttag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 1788093 1788098 . + . misc_feature unknown_1572 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1788174 1788191 . + . misc_feature unknown_1573 ; colour "6" ; note "ctaactaatttaaaacag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB misc_feature 1788447 1788452 . + . misc_feature unknown_1574 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1788485 1788498 . + . misc_feature unknown_1575 ; colour "6" ; note "cttaccgccttccag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 1789693 1790150 . + . mRNA SPAC17A5.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A5.16" ; systematic_id "SPAC17A5.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1790537 1790624 . + . mRNA SPAC1610.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1610.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1790625 1791278 . + . mRNA SPAC1610.01 ; db_xref "SPD:07/07E07" ; systematic_id "SPAC1610.01" ; synonym "SPAC17A5.17" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 1790625 1791278 . + . mRNA SPAC1610.01 ; colour "10" ;
chromosome1 GeneDB misc_feature 1790721 1791774 . + . misc_feature unknown_1576 ; note "nominal overlap with cosmid SPAC17A5 S. pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 1791482 1792243 . - . mRNA SPAC1610.02c ; db_xref "SPD:09/09D03" ; systematic_id "SPAC1610.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR116C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; gene "SPAC1610.02c" ; product "mitochondrial ribosomal protein subunit L1 (predicted)" ;
chromosome1 GeneDB CDS 1791482 1792243 . - . mRNA SPAC1610.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1792242 1792460 . - . mRNA SPAC1610.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1610.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1792593 1794972 . - . mRNA SPAC1610.03c ; systematic_id "SPAC1610.03c" ; colour "2" ; db_xref "SPD:38/38D02" ; Alias "crp79" ; synonym "meu5" ; GO "GO:0006406; mRNA export from nucleus
GO:0005737; cytoplasm
GO:0008143; poly(A) binding
GO:0030437; ascospore formation
GO:0048255; mRNA stabilization
GO:0061013; regulation of mRNA catabolic process" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12181330; date=19700101 ||| term=similar to S. pombe SPAC343.07; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=rrm RNA recognition motif; date=19700101" ; primary_name "crp79" ; product "poly(A) binding protein Crp79" ;
chromosome1 GeneDB CDS 1792593 1793951 . - . mRNA SPAC1610.03c ; colour "2" ;
chromosome1 GeneDB CDS 1794023 1794497 . - . mRNA SPAC1610.03c ; colour "2" ;
chromosome1 GeneDB CDS 1794589 1794766 . - . mRNA SPAC1610.03c ; colour "2" ;
chromosome1 GeneDB CDS 1794852 1794972 . - . mRNA SPAC1610.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 1793952 1793968 . - . misc_feature unknown_1577 ; colour "6" ; note "ctaacctcattattaag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1793952 1794022 . - . intron SPAC1610.03c ; db_xref "SPD:38/38D02" ; systematic_id "SPAC1610.03c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1794017 1794022 . - . misc_feature unknown_1578 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1794498 1794513 . - . misc_feature unknown_1579 ; colour "6" ; note "splice branch and acceptor" ;
chromosome1 GeneDB intron 1794498 1794588 . - . intron SPAC1610.03c ; db_xref "SPD:38/38D02" ; systematic_id "SPAC1610.03c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1794583 1794588 . - . misc_feature unknown_1580 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1794767 1794782 . - . misc_feature unknown_1581 ; colour "6" ; note "ttaatcaattctttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1794767 1794851 . - . intron SPAC1610.03c ; db_xref "SPD:38/38D02" ; systematic_id "SPAC1610.03c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1794846 1794851 . - . misc_feature unknown_1582 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1796091 1796299 . + . mRNA SPAC1610.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1610.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1796300 1797880 . + . mRNA SPAC1610.04 ; systematic_id "SPAC1610.04" ; colour "2" ; gene "mug99 ||| SPAC1610.04" ; note "localization was additionally determined through the presence of CCCTCTC downstream sequence significantly overrepresented in mitochondrial proteins" ; Alias "mug99" ; db_xref "SPD:25/25D11" ; GO "GO:0045132; meiotic chromosome segregation
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug99" ; product "meiotically upregulated gene Mug99" ;
chromosome1 GeneDB CDS 1796300 1797880 . + . mRNA SPAC1610.04 ; colour "2" ;
chromosome1 GeneDB misc_feature 1797636 1798519 . + . misc_feature unknown_1583 ; note "nominal overlap with cosmid SPAC1610 and cosmid SPAC1002" ;
chromosome1 GeneDB 3'-UTR 1797881 1797963 . + . mRNA SPAC1610.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1610.04" ; systematic_id "SPAC1610.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1798347 1799015 . + . mRNA SPAC1002.01 ; systematic_id "SPAC1002.01" ; colour "10" ; gene "SPAC1610.05 ||| SPAC1002.01" ; Alias "SPAC1610.05" ; db_xref "SPD:04/04F03" ; synonym "SPAC1610.05" ; controlled_curation "term=orthologous to S. cerevisiae YPL041C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; date=20040210" ; primary_name "SPAC1610.05" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 1798347 1798830 . + . mRNA SPAC1002.01 ; colour "10" ;
chromosome1 GeneDB CDS 1798960 1799015 . + . mRNA SPAC1002.01 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 1799061 1799127 . + . mRNA SPAC1002.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1002.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1799128 1799817 . + . mRNA SPAC1002.02 ; systematic_id "SPAC1002.02" ; colour "7" ; gene "SPAC1002.02 ||| mug31" ; Alias "mug31" ; db_xref "SPD:08/08A04" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0005643; nuclear pore" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR018C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mug31" ; product "nucleoporin Pom34 (predicted)" ;
chromosome1 GeneDB CDS 1799128 1799817 . + . mRNA SPAC1002.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1799818 1800053 . + . mRNA SPAC1002.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1002.02" ; systematic_id "SPAC1002.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1800107 1800211 . - . mRNA SPAC1002.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1002.03c" ; systematic_id "SPAC1002.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1800212 1802983 . - . mRNA SPAC1002.03c ; systematic_id "SPAC1002.03c" ; colour "2" ; gene "gls2 ||| SPAC1002.03c" ; db_xref "SPD:39/39B04" ; Alias "gls2" ; GO "GO:0005783; endoplasmic reticulum
GO:0004558; alpha-glucosidase activity
GO:0051691; cellular oligosaccharide biosynthesis
GO:0009272; fungal-type cell wall biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR229C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=name description, GLucoSidase; cv=name_description; date=20100126" ; primary_name "gls2" ; product "glucosidase II Gls2" ; EC_number "3.2.1.-" ;
chromosome1 GeneDB CDS 1800212 1802983 . - . mRNA SPAC1002.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1802982 1803077 . - . mRNA SPAC1002.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1002.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1803624 1803772 . - . mRNA SPAC1002.04c ; Alias "taf11" ; ID "SPAC1002.04c" ; db_xref "SPD:06/06F03" ; systematic_id "SPAC1002.04c" ; primary_name "taf11" ; gene "taf11 ||| SPAC1002.04c" ; note "mRNA from spc04180" ;
chromosome1 GeneDB CDS_parts 1803773 1804372 . - . mRNA SPAC1002.04c ; systematic_id "SPAC1002.04c" ; colour "7" ; gene "taf11 ||| SPAC1002.04c" ; Alias "taf11" ; db_xref "SPD:06/06F03" ; GO "GO:0005669; transcription factor TFIID complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YML015C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "taf11" ; product "transcription factor TFIID complex subunit Taf11 (predicted)" ; reserved_name "taf11" ;
chromosome1 GeneDB CDS 1803773 1804372 . - . mRNA SPAC1002.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1804371 1804450 . - . mRNA SPAC1002.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1002.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1804650 1806797 . - . mRNA SPAC1002.05c ; systematic_id "SPAC1002.05c" ; colour "2" ; db_xref "SPD:37/37E11" ; Alias "jmj2" ; synonym "kdm5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C5HC2 type; date=19700101 ||| term=jmjC domain; date=19700101 ||| term=jmjN domain; date=19700101 ||| term=ARID domain; date=19700101 ||| term=orthologous to S. cerevisiae YJR119C and YMR176W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human KMD5A and KMD5B and KMD5C and KMD5D ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0051864; histone demethylase activity (H3-K36 specific)
GO:0032452; histone demethylase activity (H3-K4 specific)
GO:0034647; histone demethylase activity (H3- trimethyl-K4 specific)
GO:0034647; histone demethylase activity (H3- trimethyl-K4 specific)
GO:0006338; chromatin remodeling
GO:0034648; histone demethylase activity (H3- dimethyl-K4 specific)
GO:0016577; histone demethylation
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010551; regulation of specific transcription from RNA polymerase II promoter
GO:0008270; zinc ion binding" ; primary_name "jmj2" ; product "histone demethylase Jmj2" ;
chromosome1 GeneDB CDS 1804650 1806797 . - . mRNA SPAC1002.05c ; colour "2" ;
chromosome1 GeneDB CDS_parts 1807270 1807781 . - . mRNA SPAC1002.06c ; systematic_id "SPAC1002.06c" ; colour "2" ; db_xref "SPD:05/05A07" ; Alias "bqt2" ; synonym "mug18 ||| rec23" ; GO "GO:0000781; chromosome, telomeric region
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032121; attachment of telomeres to spindle pole body
GO:0034613; cellular protein localization
GO:0045132; meiotic chromosome segregation
GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination
GO:0030437; sporulation (sensu Fungi)
GO:0045141; telomere clustering
GO:0045141; telomere clustering" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed in response to mating pheromone; db_xref=PMID:16615890; cv=gene_ex; date=20060517 ||| term=gene expression, promoter contains MCB; db_xref=PMID:16615890; cv=gene_ex; date=20060517 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "bqt2" ; product "bouquet formation protein Bqt2" ;
chromosome1 GeneDB CDS 1807270 1807402 . - . mRNA SPAC1002.06c ; colour "2" ;
chromosome1 GeneDB CDS 1807483 1807642 . - . mRNA SPAC1002.06c ; colour "2" ;
chromosome1 GeneDB CDS 1807718 1807781 . - . mRNA SPAC1002.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 1807403 1807419 . - . misc_feature unknown_1584 ; colour "6" ; note "ctaaccaccattattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1807477 1807482 . - . misc_feature unknown_1585 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1807643 1807652 . - . misc_feature unknown_1586 ; colour "6" ; note "ctaaagatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1807712 1807717 . - . misc_feature unknown_1587 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 1808080 1808241 . - . mRNA SPAC1002.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1002.07c" ; systematic_id "SPAC1002.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1808242 1809241 . - . mRNA SPAC1002.07c ; systematic_id "SPAC1002.07c" ; colour "7" ; gene "ats1 ||| SPAC1002.07c" ; Alias "ats1" ; db_xref "SPD:14/14F09" ; GO "GO:0004145; diamine N-acetyltransferase activity
GO:0006473; protein amino acid actylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20070321 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human SAT2 ortholog; date=20100821" ; primary_name "ats1" ; product "N-acetyltransferase Ats1 (predicted)" ;
chromosome1 GeneDB CDS 1808242 1808376 . - . mRNA SPAC1002.07c ; colour "7" ;
chromosome1 GeneDB CDS 1808428 1808538 . - . mRNA SPAC1002.07c ; colour "7" ;
chromosome1 GeneDB CDS 1808630 1808660 . - . mRNA SPAC1002.07c ; colour "7" ;
chromosome1 GeneDB CDS 1808707 1808741 . - . mRNA SPAC1002.07c ; colour "7" ;
chromosome1 GeneDB CDS 1808800 1808918 . - . mRNA SPAC1002.07c ; colour "7" ;
chromosome1 GeneDB CDS 1809166 1809241 . - . mRNA SPAC1002.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 1808377 1808388 . - . misc_feature unknown_1588 ; colour "6" ; note "ctaataccctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1808377 1808427 . - . intron SPAC1002.07c ; Alias "ats1" ; db_xref "SPD:14/14F09" ; systematic_id "SPAC1002.07c" ; primary_name "ats1" ; gene "ats1 ||| SPAC1002.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1808422 1808427 . - . misc_feature unknown_1589 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1808539 1808558 . - . misc_feature unknown_1590 ; colour "6" ; note "ttaaccattcaatttcttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1808539 1808629 . - . intron SPAC1002.07c ; Alias "ats1" ; db_xref "SPD:14/14F09" ; systematic_id "SPAC1002.07c" ; primary_name "ats1" ; gene "ats1 ||| SPAC1002.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1808624 1808629 . - . misc_feature unknown_1591 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1808661 1808674 . - . misc_feature unknown_1592 ; colour "6" ; note "ctgacgttgaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1808661 1808706 . - . intron SPAC1002.07c ; Alias "ats1" ; db_xref "SPD:14/14F09" ; systematic_id "SPAC1002.07c" ; primary_name "ats1" ; gene "ats1 ||| SPAC1002.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1808701 1808706 . - . misc_feature unknown_1593 ; colour "6" ; note "gtagtg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1808742 1808762 . - . misc_feature unknown_1594 ; colour "6" ; note "ctaatctataattgccatcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1808742 1808799 . - . intron SPAC1002.07c ; Alias "ats1" ; db_xref "SPD:14/14F09" ; systematic_id "SPAC1002.07c" ; primary_name "ats1" ; gene "ats1 ||| SPAC1002.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1808794 1808799 . - . misc_feature unknown_1595 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1808919 1808938 . - . misc_feature unknown_1596 ; colour "6" ; note "ttaacattttgtttatgaag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1808919 1809165 . - . intron SPAC1002.07c ; Alias "ats1" ; db_xref "SPD:14/14F09" ; systematic_id "SPAC1002.07c" ; primary_name "ats1" ; gene "ats1 ||| SPAC1002.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1809160 1809165 . - . misc_feature unknown_1597 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1809240 1809291 . - . mRNA SPAC1002.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1002.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1809732 1810022 . - . mRNA SPAC1002.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1002.08c" ; systematic_id "SPAC1002.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1810023 1811123 . - . mRNA SPAC1002.08c ; systematic_id "SPAC1002.08c" ; colour "2" ; gene "SPAC1002.08c ||| mtf1" ; Alias "mtf1" ; db_xref "SPD:17/17C03" ; GO "GO:0005759; mitochondrial matrix
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0000980; RNA polymerase II enhancer sequence specific DNA binding
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0010551; regulation of gene-specific transcription from RNA polymerase II promoter
GO:0006390; transcription from mitochondrial promoter
GO: SF 3156141; mitochondrial promoter binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:21138961; date=20110112 ||| term=orthologous to S. cerevisiae YMR228W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Vertebrates; date=20110112 ||| term=human TFB1M and TFB2M ortholog; date=20110112 ||| term=gene expression, transcriptionally regulates srk1; db_xref=PMID:21138961; date=20110112 ||| term=target is srkl; qualifier=transcriptionally_regulates; db_xref=PMID:21138961; date=20110112 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:21138961; date=20110112" ; primary_name "mtf1" ; product "mitochondrial RNA polymerase specificity factor Mtf1" ;
chromosome1 GeneDB CDS 1810023 1811123 . - . mRNA SPAC1002.08c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1811122 1811326 . - . mRNA SPAC1002.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1002.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1812048 1812132 . - . mRNA SPAC1002.09c ; Alias "dld1" ; ID "SPAC1002.09c" ; db_xref "EMBL:L40360 ||| SPD:24/24H06" ; systematic_id "SPAC1002.09c" ; gene "dld1 ||| dldh ||| SPAC1002.09c" ; primary_name "dld1" ;
chromosome1 GeneDB CDS_parts 1812133 1813668 . - . mRNA SPAC1002.09c ; systematic_id "SPAC1002.09c" ; colour "2" ; gene "dld1 ||| dldh ||| SPAC1002.09c" ; Alias "dld1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00020; ||| KEGG:MAP00260; ||| KEGG:MAP00620; ||| SPD:24/24H06" ; synonym "dldh" ; GO "GO:0005960; glycine cleavage complex
GO:0042645; mitochondrial nucleoid
GO:0009353; oxoglutarate dehydrogenase complex (sensu Eukaryota)
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)
GO:0004148; dihydrolipoyl dehydrogenase activity
GO:0015036; disulfide oxidoreductase activity
GO:0004375; glycine dehydrogenase (decarboxylating) activity
GO:0004591; oxoglutarate dehydrogenase (succinyl- transferring) activity
GO:0004739; pyruvate dehydrogenase (acetyl- transferring) activity
GO:0006103; 2-oxoglutarate metabolism
GO:0006564; L-serine biosynthesis
GO:0006086; acetyl-CoA biosynthesis from pyruvate
GO:0019464; glycine decarboxylation via glycine cleavage system
GO:0006550; isoleucine catabolism
GO:0006552; leucine catabolism
GO:0006574; valine catabolism
GO:0000082; G1/S transition of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9366254; qualifier=ts; allele=cyj150; date=20100705 ||| term=disease associated, lactic acidosis; date=20060725 ||| term=orthologous to S. cerevisiae YFL018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:9366254; date=20100917" ; primary_name "dld1" ; product "dihydrolipoamide dehydrogenase Dld1" ; EC_number "1.8.1.4" ;
chromosome1 GeneDB CDS 1812133 1813668 . - . mRNA SPAC1002.09c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1813669 1813720 . - . mRNA SPAC1002.09c ; Alias "dld1" ; ID "SPAC1002.09c" ; db_xref "EMBL:L40360" ; systematic_id "SPAC1002.09c" ; gene "dld1 ||| dldh ||| SPAC1002.09c" ; primary_name "dld1" ;
chromosome1 GeneDB CDS_parts 1813855 1815627 . - . mRNA SPAC1002.10c ; systematic_id "SPAC1002.10c" ; colour "2" ; gene "sgt1 ||| SPAC1002.10c" ; Alias "sgt1" ; db_xref "SPD:36/36C02" ; GO "GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0030528; transcription regulator activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16408318; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sgt1" ; product "SGT1 family transcriptional regulator Sgt1" ;
chromosome1 GeneDB CDS 1813855 1815627 . - . mRNA SPAC1002.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1815626 1815727 . - . mRNA SPAC1002.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1002.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1816497 1816652 . + . mRNA SPAC1002.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1002.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1816653 1818398 . + . mRNA SPAC1002.11 ; systematic_id "SPAC1002.11" ; colour "7" ; gene "gaa1 ||| SPAC1002.11" ; Alias "gaa1" ; db_xref "SPD:35/35H11" ; GO "GO:0042765; GPI-anchor transamidase complex
GO:0003923; GPI-anchor transamidase activity
GO:0016255; attachment of GPI anchor to protein" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gaa1" ; product "GPI-anchor transamidase complex subunit Gaa1 (predicted)" ;
chromosome1 GeneDB CDS 1816653 1818398 . + . mRNA SPAC1002.11 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1818399 1818533 . + . mRNA SPAC1002.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1002.11" ; systematic_id "SPAC1002.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1818587 1818694 . - . mRNA SPAC1002.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1002.12c" ; systematic_id "SPAC1002.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1818695 1820191 . - . mRNA SPAC1002.12c ; db_xref "SPD:24/24B12" ; systematic_id "SPAC1002.12c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006538; glutamate catabolism
GO:0004777; succinate-semialdehyde dehydrogenase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, 4- hydroxybutyricaciduria; date=20060920 ||| term=orthologous to S. cerevisiae YBR006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAC1002.12c" ; product "succinate-semialdehyde dehydrogenase (predicted)" ; EC_number "1.2.1.16" ;
chromosome1 GeneDB CDS 1818695 1820191 . - . mRNA SPAC1002.12c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1820190 1820346 . - . mRNA SPAC1002.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1002.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1821401 1821935 . - . mRNA SPAC1002.13c ; Alias "psu1" ; ID "SPAC1002.13c" ; db_xref "SPD:20/20A04" ; systematic_id "SPAC1002.13c" ; primary_name "psu1" ; gene "psu1 ||| SPAC1002.13c" ; note "mRNA from AU013582" ;
chromosome1 GeneDB CDS_parts 1821936 1823189 . - . mRNA SPAC1002.13c ; systematic_id "SPAC1002.13c" ; colour "2" ; gene "psu1 ||| SPAC1002.13c" ; Alias "psu1" ; db_xref "SPD:20/20A04" ; GO "GO:0009986; cell surface
GO:0009277; fungal-type cell wall
GO:0008422; beta-glucosidase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10462482; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL123W and YKR042W and YJL116C and YNL066W; date=19700101 ||| term=warning, false positive GPI anchored protein pediction; cv=warning; db_xref=PMID:12845604|PMID:17230583; date=19700101 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; primary_name "psu1" ; product "cell wall protein Psu1, beta-glucosidase (predicted)" ; EC_number "3.2.1.21" ;
chromosome1 GeneDB CDS 1821936 1823189 . - . mRNA SPAC1002.13c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1823190 1823413 . - . mRNA SPAC1002.13c ; Alias "psu1" ; ID "SPAC1002.13c" ; systematic_id "SPAC1002.13c" ; primary_name "psu1" ; gene "psu1 ||| SPAC1002.13c" ; note "mRNA from spc10137" ;
chromosome1 GeneDB CDS_parts 1823972 1824277 . + . mRNA SPAC1002.20 ; db_xref "SPD:51/51F11" ; systematic_id "SPAC1002.20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1002.20" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1823972 1824277 . + . mRNA SPAC1002.20 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 1824637 1824784 . + . mRNA SPAC1002.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1002.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1824785 1826092 . + . mRNA SPAC1002.14 ; systematic_id "SPAC1002.14" ; colour "7" ; gene "itt1 ||| SPAC1002.14" ; Alias "itt1" ; db_xref "SPD:22/22G04" ; GO "GO:0006449; regulation of translational termination
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=RWD domain; date=20060726 ||| term=orthologous to S. cerevisiae YML068W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "itt1" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB CDS 1824785 1826092 . + . mRNA SPAC1002.14 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1826093 1826122 . + . mRNA SPAC1002.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1002.14" ; systematic_id "SPAC1002.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1826160 1827061 . - . mRNA SPAC1002.15c ; systematic_id "SPAC1002.15c" ; colour "2" ; gene "pmc5 ||| SPAC1002.15c ||| med6" ; Alias "pmc5" ; db_xref "SPD:12/12D05" ; synonym "med6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR058C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016592; mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex" ; primary_name "pmc5" ; product "mediator complex subunit Pmc5" ;
chromosome1 GeneDB CDS 1826160 1826423 . - . mRNA SPAC1002.15c ; colour "2" ;
chromosome1 GeneDB CDS 1826465 1826547 . - . mRNA SPAC1002.15c ; colour "2" ;
chromosome1 GeneDB CDS 1826603 1826809 . - . mRNA SPAC1002.15c ; colour "2" ;
chromosome1 GeneDB CDS 1826965 1827061 . - . mRNA SPAC1002.15c ; colour "2" ;
chromosome1 GeneDB misc_feature 1826424 1826434 . - . misc_feature unknown_1598 ; colour "6" ; note "ctaacgtctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1826459 1826464 . - . misc_feature unknown_1599 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1826548 1826561 . - . misc_feature unknown_1600 ; colour "6" ; note "ttaacttttactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1826597 1826602 . - . misc_feature unknown_1601 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1826810 1826827 . - . misc_feature unknown_1602 ; colour "6" ; note "ctaatatagaaaacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1826959 1826964 . - . misc_feature unknown_1603 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 1827871 1829370 . - . mRNA SPAC1002.16c ; db_xref "SPD:24/24C10" ; systematic_id "SPAC1002.16c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR260W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0015663; nicotinamide mononucleotide permease activity
GO:0035353; nicotinamide mononucleotide transmembrane transport" ; gene "SPAC1002.16c" ; product "nicotinic acid plasma membrane transporter (predicted)" ;
chromosome1 GeneDB CDS 1827871 1829370 . - . mRNA SPAC1002.16c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1830685 1831011 . - . mRNA SPAC1002.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1002.17c" ; systematic_id "SPAC1002.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1831012 1831581 . - . mRNA SPAC1002.17c ; systematic_id "SPAC1002.17c" ; colour "7" ; gene "SPAC1002.17c ||| urg2" ; Alias "urg2" ; db_xref "SPD:06/06A05" ; GO "GO:0004845; uracil phosphoribosyltransferase activity
GO:0008655; pyrimidine salvage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR128W; date=19700101 ||| term=name description, Uracil Regulatable Gene; cv=name_description; date=20060912 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "urg2" ; product "uracil phosphoribosyltransferase (predicted)" ;
chromosome1 GeneDB CDS 1831012 1831581 . - . mRNA SPAC1002.17c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1831580 1831731 . - . mRNA SPAC1002.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1002.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1832317 1832456 . + . mRNA SPAC1002.18 ; ID "SPAC1002.18" ; systematic_id "SPAC1002.18" ; gene "SPAC1002.18" ; note "mRNA from SPD119" ;
chromosome1 GeneDB CDS_parts 1832457 1833656 . + . mRNA SPAC1002.18 ; systematic_id "SPAC1002.18" ; colour "10" ; gene "SPAC1002.18" ; db_xref "SPD:19/19B08" ; Alias "urg3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Uracil Regulatable Gene; cv=name_description; date=20060912 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "urg3" ; product "DUF1688 family protein" ;
chromosome1 GeneDB CDS 1832457 1833656 . + . mRNA SPAC1002.18 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1833657 1833811 . + . mRNA SPAC1002.18 ; ID "SPAC1002.18" ; db_xref "SPD:19/19B08" ; systematic_id "SPAC1002.18" ; gene "SPAC1002.18" ; note "mRNA from SPD119" ;
chromosome1 GeneDB misc_feature 1834875 1835321 . - . misc_feature unknown_1604 ; note "previously annotated as SPAC1002.21, was annotated as dubious but based on position in uracil regulatable operon, as this CDS does not appear to be transcribed. It is possible that the localization data is an artifact of the combination of overexpression and hydrophobicity. The protein sequence is also a strange composition, and there is no ortholog in octosprous or japonicus genomes. On balance, taking into account all of the available features and contextual information, it is unlikely that this feature codes for a bona fida protein. 31.10.07" ;
chromosome1 GeneDB 5'-UTR 1835307 1835468 . + . mRNA SPAC1002.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1002.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1835469 1836788 . + . mRNA SPAC1002.19 ; systematic_id "SPAC1002.19" ; colour "10" ; gene "urg1 ||| SPAC1002.19" ; db_xref "SPD:23/23A03" ; Alias "urg1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Uracil Regulatable Gene; cv=name_description; date=20060912 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "urg1" ; product " ||| GTP cyclohydrolase II (predicted)" ; reserved_name "urg1" ;
chromosome1 GeneDB CDS 1835469 1836788 . + . mRNA SPAC1002.19 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1836789 1836957 . + . mRNA SPAC1002.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1002.19" ; systematic_id "SPAC1002.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 1837689 1837907 . + . misc_feature unknown_1605 ; note "nominal overlap with SPAC1002 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 1837917 1837944 . - . misc_feature unknown_1606 ; note "polyA 28 bases" ;
chromosome1 GeneDB 5'-UTR 1838497 1838586 . + . mRNA SPAC1399.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1399.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1838587 1840293 . + . mRNA SPAC1399.05c ; db_xref "SPD:49/49B03" ; systematic_id "SPAC1399.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC1399.05c" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome1 GeneDB CDS 1838587 1838852 . + . mRNA SPAC1399.05c ; colour "7" ;
chromosome1 GeneDB CDS 1838970 1840293 . + . mRNA SPAC1399.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 1838853 1838858 . + . misc_feature unknown_1607 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1838940 1838969 . + . misc_feature unknown_1608 ; colour "6" ; note "ctaacaaatttactaaactgcttattatag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 1840621 1841283 . + . mRNA SPAC1399.04c ; db_xref "SPD:41/41E02" ; systematic_id "SPAC1399.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0004845; uracil phosphoribosyltransferase activity
GO:0008655; pyrimidine salvage" ; gene "SPAC1399.04c" ; product "uracil phosphoribosyltransferase (predicted)" ;
chromosome1 GeneDB CDS 1840621 1841283 . + . mRNA SPAC1399.04c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1841908 1841935 . - . mRNA SPAC1399.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1399.03" ; systematic_id "SPAC1399.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1841936 1843681 . - . mRNA SPAC1399.03 ; systematic_id "SPAC1399.03" ; colour "2" ; gene "fur4 ||| SPAC1399.03" ; Alias "fur4" ; db_xref "SPD:49/49B11" ; GO "GO:0045121; lipid raft
GO:0005886; plasma membrane
GO:0015505; uracil:cation symporter activity
GO:0015857; uracil transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR021W and YIR028W and YBL042C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "fur4" ; product "uracil permease" ;
chromosome1 GeneDB CDS 1841936 1843681 . - . mRNA SPAC1399.03 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1843680 1843995 . - . mRNA SPAC1399.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1399.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 1844130 1845339 . + . misc_RNA SPNCRNA.178 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.178" ; synonym "SPNG328-329" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 1845648 1846120 . - . mRNA SPAC1399.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1399.02" ; systematic_id "SPAC1399.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1846121 1847890 . - . mRNA SPAC1399.02 ; db_xref "SPD:49/49C02" ; systematic_id "SPAC1399.02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCL069W and YGR224W and YPR198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; gene "SPAC1399.02" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB CDS 1846121 1847890 . - . mRNA SPAC1399.02 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1847889 1848341 . - . mRNA SPAC1399.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1399.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 1847891 1852627 . - . misc_feature unknown_1609 ; note "low complexity gene free region with strand inversion (ie (G-C)/(G+C) inversion)" ;
chromosome1 GeneDB misc_feature 1848632 1849744 . + . misc_feature unknown_1610 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG331 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_feature 1850053 1850390 . + . misc_feature unknown_1611 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG332 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_feature 1850238 1850321 . + . misc_feature unknown_1612 ; note "low complexity sequence around point of inflection" ;
chromosome1 GeneDB CDS_parts 1852627 1854432 . + . mRNA SPAC1399.01c ; db_xref "SPD:49/49C09" ; systematic_id "SPAC1399.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; colour "7" ; gene "SPAC1399.01c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB CDS 1852627 1854432 . + . mRNA SPAC1399.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 1854741 1854944 . + . misc_feature unknown_1613 ; note "nominal overlap with c1399 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 1855326 1855805 . + . mRNA SPAP11E10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP11E10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1855806 1856798 . + . mRNA SPAP11E10.01 ; systematic_id "SPAP11E10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081203" ; colour "10" ; gene "SPAP11E10.01" ; product "ornithine cyclodeaminase family (predicted)" ;
chromosome1 GeneDB CDS 1855806 1856798 . + . mRNA SPAP11E10.01 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1856799 1856811 . + . mRNA SPAP11E10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP11E10.01" ; systematic_id "SPAP11E10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1856893 1860141 . - . mRNA SPAP11E10.02c ; systematic_id "SPAP11E10.02c" ; colour "2" ; gene "mam3 ||| SPAP11E10.02c ||| SPAPB1A10.01c" ; Alias "mam3" ; synonym "SPAPB1A10.01c" ; GO "GO:0009986; cell surface
GO:0000752; agglutination during conjugation with cellular fusion
GO:0010339; external side of cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20071106 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; primary_name "mam3" ; product "cell agglutination protein Mam3" ;
chromosome1 GeneDB CDS 1856893 1860141 . - . mRNA SPAP11E10.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 1858470 1858591 . + . misc_feature unknown_1614 ; note "nominal overlap with plasmid p11E10 and pB1A10" ;
chromosome1 GeneDB 5'-UTR 1860140 1860663 . - . mRNA SPAP11E10.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP11E10.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 1861146 1861484 . + . misc_RNA SPNCRNA.181 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.181" ; synonym "SPNG336" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 1861934 1862944 . + . mRNA SPAPB1A10.02 ; Alias "scm3" ; systematic_id "SPAPB1A10.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL139C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19217403; date=20090422 ||| term=phenotype, chromosome segregation defects; allele=Scm3-6|Scm3-19; cv=phenotype; db_xref=PMID:19217403; date=20090422 ||| term=target is Cnp1; qualifier=localization_target; db_xref=PMID:19217403; date=20090422 ||| term=species distribution, conserved in Metazoa; db_xref=PMID:19563746; date=20090720 ||| term=species distribution, conserved in Vertebrates; db_xref=PMID:19563746; date=20090720 ||| term=species distribution, conserved in Eukaryotes only; date=20090720" ; colour "2" ; GO "GO:0000780; condensed nuclear chromosome, pericentric region
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0034501; protein localization to kinetochore
GO:0031066; regulation of histone deacetyation at centromere" ; gene "scm3 ||| SPAPB1A10.02" ; primary_name "scm3" ; product "CENP-A chaperone Scm3" ;
chromosome1 GeneDB CDS 1861934 1862944 . + . mRNA SPAPB1A10.02 ; colour "2" ;
chromosome1 GeneDB CDS_parts 1863363 1863762 . + . mRNA SPAPB1A10.03 ; Alias "nxt1" ; systematic_id "SPAPB1A10.03" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human NXT1 and NXT2 ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14963046; date=19700101 ||| term=orthologous to S. cerevisiae YKL186C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081116 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=warning, gene structure updated; cv=warning; date=20100317" ; GO "GO:0046982; protein heterodimerization activity
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0000054; ribosome export from nucleus
GO:0042272; nuclear RNA export factor complex" ; gene "nxt1 ||| SPAPB1A10.03" ; primary_name "nxt1" ; product "mRNA export receptor Nxt1" ;
chromosome1 GeneDB CDS 1863363 1863381 . + . mRNA SPAPB1A10.03 ; colour "2" ;
chromosome1 GeneDB CDS 1863434 1863762 . + . mRNA SPAPB1A10.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 1863382 1863387 . + . misc_feature unknown_1615 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1863421 1863433 . + . misc_feature unknown_1616 ; colour "6" ; note "ctaacaattaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1863706 1863711 . + . misc_feature unknown_1617 ; colour "6" ; note "gtcagt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 1863972 1864457 . + . mRNA SPAPB1A10.16 ; systematic_id "SPAPB1A10.16" ; controlled_curation "term=orthologous to S. cerevisiae YGL041W-A; date=20071203 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; cv=warning; date=20100317 ||| term=warning, new gene; cv=warning; date=20100317 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; colour "10" ; gene "SPAPB1A10.16" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 1863972 1864360 . + . mRNA SPAPB1A10.16 ; colour "10" ;
chromosome1 GeneDB CDS 1864415 1864457 . + . mRNA SPAPB1A10.16 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1864565 1864672 . - . mRNA SPAPB1A10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1A10.04c" ; systematic_id "SPAPB1A10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1864673 1865608 . - . mRNA SPAPB1A10.04c ; Alias "cwp1" ; systematic_id "SPAPB1A10.04c" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005953; CAAX-protein geranylgeranyltransferase complex
GO:0004663; Rab-protein geranylgeranyltransferase activity
GO:0005515; protein binding
GO:0004661; protein geranylgeranyltransferase activity
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0018344; protein geranylgeranylation" ; gene "cwp1 ||| SPAPB1A10.04c" ; primary_name "cwp1" ; product "geranylgeranyltransferase I alpha subunit Cwp1" ;
chromosome1 GeneDB CDS 1864673 1864880 . - . mRNA SPAPB1A10.04c ; colour "2" ;
chromosome1 GeneDB CDS 1864932 1865608 . - . mRNA SPAPB1A10.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 1864881 1864895 . - . misc_feature unknown_1618 ; colour "6" ; note "ttaacttttttacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1864926 1864931 . - . misc_feature unknown_1619 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1865607 1865777 . - . mRNA SPAPB1A10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1A10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1866933 1867161 . + . mRNA SPAPB1A10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1A10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1867162 1868019 . + . mRNA SPAPB1A10.05 ; systematic_id "SPAPB1A10.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAPB1A10.05" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1867162 1868019 . + . mRNA SPAPB1A10.05 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 1868020 1868140 . + . mRNA SPAPB1A10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1A10.05" ; systematic_id "SPAPB1A10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1868087 1868251 . - . mRNA SPAPB1A10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1A10.06c" ; systematic_id "SPAPB1A10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1868252 1871850 . - . mRNA SPAPB1A10.06c ; systematic_id "SPAPB1A10.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YMR128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0003724; RNA helicase activity
GO:0030490; processing of 20S pre-rRNA" ; gene "SPAPB1A10.06c" ; product "ATP-dependent RNA helicase Dhr1 (predicted)" ;
chromosome1 GeneDB CDS 1868252 1871515 . - . mRNA SPAPB1A10.06c ; colour "7" ;
chromosome1 GeneDB CDS 1871563 1871850 . - . mRNA SPAPB1A10.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 1871516 1871531 . - . misc_feature unknown_1620 ; colour "6" ; note "ctaacaaccttattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1871557 1871562 . - . misc_feature unknown_1621 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1871849 1871880 . - . mRNA SPAPB1A10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1A10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1872423 1873797 . - . mRNA SPAPB1A10.07c ; systematic_id "SPAPB1A10.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR105C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SERINC1 and SERINC2 and SERINC3 orrtholog; date=20100908" ; colour "7" ; GO "GO:0030148; sphingolipid biosynthesis
GO:0006658; phosphatidylserine metabolism
GO:0005886; plasma membrane" ; gene "SPAPB1A10.07c" ; product "sphingolipid biosynthesis protein (predicted)" ;
chromosome1 GeneDB CDS 1872423 1872472 . - . mRNA SPAPB1A10.07c ; colour "7" ;
chromosome1 GeneDB CDS 1872522 1873797 . - . mRNA SPAPB1A10.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 1872473 1872490 . - . misc_feature unknown_1622 ; colour "6" ; note "ctaacaacaatatttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1872516 1872521 . - . misc_feature unknown_1623 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1875896 1876270 . + . mRNA SPAPB1A10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1A10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1876271 1877581 . + . mRNA SPAPB1A10.08 ; systematic_id "SPAPB1A10.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; gene "SPAPB1A10.08" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1876271 1876886 . + . mRNA SPAPB1A10.08 ; colour "8" ;
chromosome1 GeneDB CDS 1876959 1877581 . + . mRNA SPAPB1A10.08 ; colour "8" ;
chromosome1 GeneDB misc_feature 1876887 1876892 . + . misc_feature unknown_1624 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1876944 1876958 . + . misc_feature unknown_1625 ; colour "6" ; note "ctaacaatatcatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1877582 1877822 . + . mRNA SPAPB1A10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1A10.08" ; systematic_id "SPAPB1A10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1878205 1878361 . + . mRNA SPAPB1A10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1A10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1878362 1880604 . + . mRNA SPAPB1A10.09 ; Alias "ase1" ; systematic_id "SPAPB1A10.09" ; colour "2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15647374; date=19700101 ||| term=orthologous to S. cerevisiae YOR058C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:19686868; date=20090820 ||| term=target of Klp9; qualifier=dephosphorylated_by; db_xref=PMID:19686868; date=20090820 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:19686868; date=20090820 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005881; cytoplasmic microtubule
GO:0000923; equatorial microtubule organizing center
GO:0005876; spindle microtubule
GO:0051233; spindle midzone
GO:0005816; spindle pole body
GO:0008017; microtubule binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0031565; cytokinesis checkpoint
GO:0030989; horsetail nuclear movement
GO:0001578; microtubule bundle formation
GO:0007020; microtubule nucleation
GO:0000022; mitotic spindle elongation
GO:0071775; regulation of cell cycle cytokinesis
GO:0051256; spindle midzone assembly involved in mitosis" ; gene "ase1 ||| SPAPB1A10.09" ; primary_name "ase1" ; product "antiparallel microtubule cross-linking factor Ase1" ;
chromosome1 GeneDB CDS 1878362 1878785 . + . mRNA SPAPB1A10.09 ; colour "2" ;
chromosome1 GeneDB CDS 1878833 1880604 . + . mRNA SPAPB1A10.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 1878786 1878791 . + . misc_feature unknown_1626 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1878822 1878832 . + . misc_feature unknown_1627 ; colour "6" ; note "ctgatgtatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1880605 1880682 . + . mRNA SPAPB1A10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1A10.09" ; systematic_id "SPAPB1A10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1880738 1880878 . - . mRNA SPAPB1A10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1A10.10c" ; systematic_id "SPAPB1A10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1880879 1881910 . - . mRNA SPAPB1A10.10c ; Alias "ypt71" ; systematic_id "SPAPB1A10.10c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Rab subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YML001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, vacoule organization defects, large vacuoles; db_xref=PMID:16357443; date=20100704" ; GO "GO:0005744; vacuolar membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006896; Golgi to vacuole transport
GO:0006897; endocytosis
GO:0006886; intracellular protein transport
GO:0061192; negative regulation of vacuole fusion, non-autophagic
GO:0007264; small GTPase mediated signal transduction" ; gene "ypt71 ||| SPAPB1A10.10c" ; primary_name "ypt71" ; product "GTPase Ypt71" ;
chromosome1 GeneDB CDS 1880879 1881325 . - . mRNA SPAPB1A10.10c ; colour "2" ;
chromosome1 GeneDB CDS 1881380 1881478 . - . mRNA SPAPB1A10.10c ; colour "2" ;
chromosome1 GeneDB CDS 1881830 1881910 . - . mRNA SPAPB1A10.10c ; colour "2" ;
chromosome1 GeneDB misc_feature 1881326 1881339 . - . misc_feature unknown_1628 ; colour "6" ; note "ctaattataaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1881374 1881379 . - . misc_feature unknown_1629 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1881479 1881496 . - . misc_feature unknown_1630 ; colour "6" ; note "ttaacatcgtcattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1881824 1881829 . - . misc_feature unknown_1631 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1881909 1881945 . - . mRNA SPAPB1A10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1A10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1882385 1882470 . - . mRNA SPAPB1A10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1A10.11c" ; systematic_id "SPAPB1A10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1882471 1884051 . - . mRNA SPAPB1A10.11c ; systematic_id "SPAPB1A10.11c" ; colour "7" ; gene "SPAPB1A10.11c" ; Alias "mse1" ; db_xref "KEGG:MAP00251; ||| KEGG:MAP00860; ||| KEGG:MAP00970;" ; GO "GO:0006424; glutamyl-tRNA aminoacylation
GO:0004818; glutamate-tRNA ligase activity
GO:0005739; mitochondrion
GO:0006412; protein biosynthesis
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mse1" ; product "mitochondrial glutamyl-tRNA synthetase Mse1 (predicted)" ; reserved_name "mse1" ; EC_number "6.1.1.17" ;
chromosome1 GeneDB CDS 1882471 1884051 . - . mRNA SPAPB1A10.11c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1884050 1884256 . - . mRNA SPAPB1A10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1A10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1884422 1884616 . - . mRNA SPAPB1A10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1A10.12c" ; systematic_id "SPAPB1A10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1884617 1886203 . - . mRNA SPAPB1A10.12c ; Alias "alo1" ; systematic_id "SPAPB1A10.12c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0031307; integral to mitochondrial outer membrane
GO:0003885; D-arabinono-1,4-lactone oxidase activity
GO:0034599; cellular response to oxidative stress" ; gene "SPAPB1A10.12c ||| alo1" ; primary_name "alo1" ; product "D-arabinono-1,4-lactone oxidase (predicted)" ;
chromosome1 GeneDB CDS 1884617 1885876 . - . mRNA SPAPB1A10.12c ; colour "7" ;
chromosome1 GeneDB CDS 1886078 1886203 . - . mRNA SPAPB1A10.12c ; colour "7" ;
chromosome1 GeneDB misc_feature 1885877 1885895 . - . misc_feature unknown_1632 ; colour "6" ; note "ctaacattattatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1886072 1886077 . - . misc_feature unknown_1633 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1886202 1886345 . - . mRNA SPAPB1A10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1A10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1887555 1887684 . + . mRNA SPAPB1A10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1A10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1887685 1889274 . + . mRNA SPAPB1A10.13 ; systematic_id "SPAPB1A10.13" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, no apparent orthologs; date=20090303" ; GO "GO:0005737; cytoplasm" ; colour "8" ; gene "SPAPB1A10.13" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1887685 1889274 . + . mRNA SPAPB1A10.13 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 1889275 1889755 . + . mRNA SPAPB1A10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1A10.13" ; systematic_id "SPAPB1A10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1890528 1890919 . + . mRNA SPAPB1A10.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1A10.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1890920 1891651 . + . mRNA SPAPB1A10.14 ; systematic_id "SPAPB1A10.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; attribution=pers. comm. T. Toda; date=20080122 ||| term=species distribution, orthologs cannot be distinguished; date=20080122 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0032446; protein modification by small protein conjugation
GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging" ; colour "7" ; gene "SPAPB1A10.14" ; product "F-box protein (predicted)" ;
chromosome1 GeneDB CDS 1890920 1891651 . + . mRNA SPAPB1A10.14 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1891652 1892012 . + . mRNA SPAPB1A10.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1A10.14" ; systematic_id "SPAPB1A10.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1892554 1893694 . + . mRNA SPAPB1A10.15 ; Alias "arv1" ; systematic_id "SPAPB1A10.15" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR242C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006696; ergosterol metabolic process
GO:0005794; Golgi apparatus
GO:0005783; endoplasmic reticulum
GO:0016021; integral to membrane
GO:0006665; sphingolipid metabolism
GO:0032366; intracellular sterol transport
GO:0030176; integral to endoplasmic reticulum membrane" ; gene "SPAPB1A10.15 ||| arv1" ; primary_name "arv1" ; product "Arv1-like family protein Arv1 (predicted)" ; reserved_name "arv1" ;
chromosome1 GeneDB CDS 1892554 1892640 . + . mRNA SPAPB1A10.15 ; colour "7" ;
chromosome1 GeneDB CDS 1892926 1893060 . + . mRNA SPAPB1A10.15 ; colour "7" ;
chromosome1 GeneDB CDS 1893098 1893694 . + . mRNA SPAPB1A10.15 ; colour "7" ;
chromosome1 GeneDB misc_feature 1892641 1892646 . + . misc_feature unknown_1634 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1892908 1892925 . + . misc_feature unknown_1635 ; colour "6" ; note "ctaacgactatgttacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1893061 1893066 . + . misc_feature unknown_1636 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1894812 1894953 . + . misc_feature unknown_1637 ; note "nominal overlap with SPAC140 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 1895420 1895532 . + . mRNA SPAC140.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC140.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1895533 1896291 . + . mRNA SPAC140.01 ; systematic_id "SPAC140.01" ; colour "7" ; gene "sdh2 ||| SPAC140.01" ; Alias "sdh2" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00190; ||| SPD:09/09C12" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006121; mitochondrial electron transport, succinate to ubiquinone
GO:0008177; succinate dehydrogenase (ubiquinone) activity
GO:0005749; respiratory chain complex II (sensu Eukaryota)
GO:0006105; succinate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, pheochromocytoma; date=20091120 ||| term=human SDHB ortholog; date=20091120 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "sdh2" ; product "succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit (predicted)" ; EC_number "1.3.5.1" ;
chromosome1 GeneDB CDS 1895533 1896291 . + . mRNA SPAC140.01 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1896292 1896631 . + . mRNA SPAC140.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC140.01" ; systematic_id "SPAC140.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1897513 1897522 . + . mRNA SPAC140.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC140.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1897523 1899025 . + . mRNA SPAC140.02 ; systematic_id "SPAC140.02" ; colour "2" ; gene "gar2 ||| SPAC140.02" ; Alias "gar2" ; db_xref "SPD:24/24D02" ; GO "GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0003723; RNA binding
GO:0007000; nucleolus organization and biogenesis
GO:0006364; rRNA processing
GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YGR159C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; qualifier=during_mitosis; cv=pt_mod; db_xref=PMID:9211981; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "gar2" ; product "nucleolar protein required for rRNA processing" ;
chromosome1 GeneDB CDS 1897523 1899025 . + . mRNA SPAC140.02 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1899026 1899436 . + . mRNA SPAC140.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC140.02" ; systematic_id "SPAC140.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1899932 1900051 . + . mRNA SPAC140.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC140.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1900052 1901431 . + . mRNA SPAC140.03 ; systematic_id "SPAC140.03" ; colour "2" ; gene "arb1 ||| SPAC140.03" ; Alias "arb1" ; db_xref "SPD:21/21D03" ; GO "GO:0033167; ARC complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008428; ribonuclease inhibitor activity
GO:0033168; RNA interference, conversion of ds siRNA to ss siRNA
GO:0031047; RNA-mediated gene silencing
GO:0030702; chromatin silencing at centromere
GO:0051570; regulation of histone H3-K9 methylation
GO:0030148; chromatin silencing by small RNA" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070323 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "arb1" ; product "argonaute binding protein 1" ;
chromosome1 GeneDB CDS 1900052 1900165 . + . mRNA SPAC140.03 ; colour "2" ;
chromosome1 GeneDB CDS 1900207 1900289 . + . mRNA SPAC140.03 ; colour "2" ;
chromosome1 GeneDB CDS 1900329 1900346 . + . mRNA SPAC140.03 ; colour "2" ;
chromosome1 GeneDB CDS 1900386 1900637 . + . mRNA SPAC140.03 ; colour "2" ;
chromosome1 GeneDB CDS 1900699 1901431 . + . mRNA SPAC140.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 1900166 1900171 . + . misc_feature unknown_1638 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB intron 1900166 1900206 . + . intron SPAC140.03 ; Alias "arb1" ; db_xref "PMID:17310250 ||| SPD:21/21D03" ; systematic_id "SPAC140.03" ; primary_name "arb1" ; gene "arb1 ||| SPAC140.03" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 1900193 1900206 . + . misc_feature unknown_1639 ; colour "6" ; note "ctaataaatattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1900290 1900295 . + . misc_feature unknown_1640 ; colour "6" ; note "gtgaga, splice donor sequence" ;
chromosome1 GeneDB intron 1900290 1900328 . + . intron SPAC140.03 ; Alias "arb1" ; db_xref "PMID:17310250 ||| SPD:21/21D03" ; systematic_id "SPAC140.03" ; primary_name "arb1" ; gene "arb1 ||| SPAC140.03" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 1900316 1900328 . + . misc_feature unknown_1641 ; colour "6" ; note "ctaacacttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1900347 1900352 . + . misc_feature unknown_1642 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome1 GeneDB intron 1900347 1900385 . + . intron SPAC140.03 ; Alias "arb1" ; db_xref "PMID:17310250 ||| SPD:21/21D03" ; systematic_id "SPAC140.03" ; primary_name "arb1" ; gene "arb1 ||| SPAC140.03" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 1900374 1900385 . + . misc_feature unknown_1643 ; colour "6" ; note "ctgacaaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1900638 1900643 . + . misc_feature unknown_1644 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB intron 1900638 1900698 . + . intron SPAC140.03 ; Alias "arb1" ; db_xref "PMID:17310250 ||| SPD:21/21D03" ; systematic_id "SPAC140.03" ; primary_name "arb1" ; gene "arb1 ||| SPAC140.03" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 1900685 1900698 . + . misc_feature unknown_1645 ; colour "6" ; note "ctaatcaatttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_RNA 1901612 1901982 . + . misc_RNA SPNCRNA.182 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.182" ; synonym "SPNG345" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 1902319 1903206 . + . mRNA SPAC140.04 ; db_xref "SPD:12/12A04" ; systematic_id "SPAC140.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human c3ORF19 ortholog; date=20100901 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101" ; colour "10" ; gene "SPAC140.04" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB CDS 1902319 1903206 . + . mRNA SPAC140.04 ; colour "10" ;
chromosome1 GeneDB misc_RNA 1902620 1904134 . - . misc_RNA SPNCRNA.557 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.557" ; synonym "SPNG2AF1" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB 3'-UTR 1903207 1903841 . + . mRNA SPAC140.04 ; ID "SPAC140.04" ; db_xref "SPD:12/12A04" ; systematic_id "SPAC140.04" ; gene "SPAC140.04" ; note "mRNA from AU012391" ;
chromosome1 GeneDB misc_feature 1904135 1908267 . + . misc_feature unknown_1646 ; note "low complexity gene-free region" ;
chromosome1 GeneDB misc_feature 1904410 1906156 . + . misc_feature unknown_1647 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG347-48 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 1907300 1908267 . + . mRNA SPAC110.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC110.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1908268 1911339 . + . mRNA SPAC110.01 ; systematic_id "SPAC110.01" ; colour "7" ; gene "ppk1 ||| SPAC140.05 ||| SPAC110.01" ; Alias "ppk1" ; db_xref "SPD:49/49F07" ; synonym "SPAC140.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YOR233W and YPL141C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation" ; primary_name "ppk1" ; product "serine/threonine protein kinase Ppk1 (predicted)" ;
chromosome1 GeneDB CDS 1908268 1911339 . + . mRNA SPAC110.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 1909860 1910137 . + . misc_feature unknown_1648 ; note "nominal overlap with SPAC140 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 1911340 1911700 . + . mRNA SPAC110.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC110.01" ; systematic_id "SPAC110.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1911851 1912041 . + . mRNA SPAC110.02 ; Alias "pds5" ; ID "SPAC110.02" ; db_xref "EMBL:AB067651" ; systematic_id "SPAC110.02" ; primary_name "pds5" ; gene "pds5 ||| SPAC110.02" ;
chromosome1 GeneDB CDS_parts 1912042 1915659 . + . mRNA SPAC110.02 ; systematic_id "SPAC110.02" ; colour "2" ; gene "pds5 ||| SPAC110.02" ; Alias "pds5" ; db_xref "SPD:49/49G06" ; GO "GO:0000794; condensed nuclear chromosome
GO:0030892; mitotic cohesin complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0000070; mitotic sister chromatid segregation
GO:0006974; response to DNA damage stimulus
GO:0007062; sister chromatid cohesion
GO:0034501; protein localization to kinetochore
GO:2000281; regulation of localization of chromosome passenger complex to kinetochore
GO:2000281; regulation of histone H3-T3 phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11861765; date=19700101 ||| term=orthologous to S. cerevisiae YMR076C; date=19700101 ||| term=CUE domain protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Hrk1; qualifier=localization_target; db_xref=PMID:20929775; date=20101115" ; primary_name "pds5" ; product "cohesin-associated protein Pds5" ;
chromosome1 GeneDB CDS 1912042 1915659 . + . mRNA SPAC110.02 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1915660 1915897 . + . mRNA SPAC110.02 ; Alias "pds5" ; ID "SPAC110.02" ; db_xref "SPD:49/49G06" ; systematic_id "SPAC110.02" ; primary_name "pds5" ; gene "pds5 ||| SPAC110.02" ; note "mRNA from AF049529" ;
chromosome1 GeneDB 5'-UTR 1916054 1916107 . + . mRNA SPAC110.03 ; Alias "cdc42" ; ID "SPAC110.03" ; db_xref "EMBL:U59434" ; systematic_id "SPAC110.03" ; primary_name "cdc42" ; gene "cdc42 ||| SPAC110.03" ; note "confirmed by mRNA" ;
chromosome1 GeneDB CDS_parts 1916108 1917279 . + . mRNA SPAC110.03 ; systematic_id "SPAC110.03" ; colour "2" ; gene "cdc42 ||| SPAC110.03" ; Alias "cdc42" ; db_xref "SPD:50/50D07" ; GO "GO:0032153; cell division site
GO:0009898; internal side of plasma membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005515; protein binding
GO:0032955; regulation of barrier septum formation
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0032951; regulation of beta-glucan biosynthetic process
GO:0031137; regulation of conjugation with cellular fusion
GO:0032878; regulation of establishment and/or maintenance of cell polarity
GO:0032488; Cdc42 protein signal tansduction
GO:0071521; Cdc42 GTPase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Rho family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YLR229C; date=19700101 ||| term=target of Scd1; db_xref=PMID:11042180; date=19700101 ||| term=target of Nrf1; db_xref=PMID:11042180; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=target of Rga4; db_xref=PMID:18328707; date=20080430 ||| term=pathway, Ras1-Scd; cv=pathway; date=20080718 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cdc42" ; product "Rho family GTPase Cdc42" ;
chromosome1 GeneDB CDS 1916108 1916155 . + . mRNA SPAC110.03 ; colour "2" ;
chromosome1 GeneDB CDS 1916319 1916387 . + . mRNA SPAC110.03 ; colour "2" ;
chromosome1 GeneDB CDS 1916818 1917279 . + . mRNA SPAC110.03 ; colour "2" ;
chromosome1 GeneDB intron 1916156 1916318 . + . intron SPAC110.03 ; Alias "cdc42" ; db_xref "SPD:50/50D07" ; systematic_id "SPAC110.03" ; primary_name "cdc42" ; gene "cdc42 ||| SPAC110.03" ; note "confirmed by mRNA" ;
chromosome1 GeneDB intron 1916388 1916817 . + . intron SPAC110.03 ; Alias "cdc42" ; db_xref "SPD:50/50D07" ; systematic_id "SPAC110.03" ; primary_name "cdc42" ; gene "cdc42 ||| SPAC110.03" ; note "confirmed by mRNA" ;
chromosome1 GeneDB 3'-UTR 1917280 1917656 . + . mRNA SPAC110.03 ; Alias "cdc42" ; ID "SPAC110.03" ; db_xref "SPD:50/50D07" ; systematic_id "SPAC110.03" ; primary_name "cdc42" ; gene "cdc42 ||| SPAC110.03" ; note "mRNA from AU013406" ;
chromosome1 GeneDB 3'-UTR 1917845 1917997 . - . mRNA SPAC110.04c ; Alias "pss1" ; ID "SPAC110.04c" ; db_xref "EMBL:U59434 ||| SPD:49/49D08" ; systematic_id "SPAC110.04c" ; primary_name "pss1" ;
chromosome1 GeneDB CDS_parts 1917998 1920160 . - . mRNA SPAC110.04c ; systematic_id "SPAC110.04c" ; colour "2" ; db_xref "SPD:49/49D08" ; Alias "pss1" ; synonym "ssp1 ||| SPAP14E8.01c" ; GO "GO:0005737; cytoplasm
GO:0034605; cellular response to heat
GO:0000774; adenyl-nucleotide exchange factor activity
GO:0006457; protein folding
GO:0042026; protein refolding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL106C and YBR169C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "pss1" ; product "heat shock protein Pss1" ;
chromosome1 GeneDB CDS 1917998 1920160 . - . mRNA SPAC110.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 1919467 1919841 . + . misc_feature unknown_1649 ; note "nominal overlap with SPAP14E8 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 1920161 1920201 . - . mRNA SPAC110.04c ; Alias "pss1" ; ID "SPAC110.04c" ; db_xref "EMBL:U59434" ; systematic_id "SPAC110.04c" ; primary_name "pss1" ;
chromosome1 GeneDB intron 1920202 1920606 . - . intron SPAC110.04c ; Alias "pss1" ; db_xref "SPD:49/49D08 ||| EMBL:U59434" ; systematic_id "SPAC110.04c" ; primary_name "pss1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB 5'-UTR 1922592 1922955 . + . mRNA SPAP14E8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP14E8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1922956 1924763 . + . mRNA SPAP14E8.02 ; systematic_id "SPAP14E8.02" ; colour "7" ; GO "GO:0000790; nuclear chromatin
GO:0003682; chromatin binding
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR183C and YDR501W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, from cerevisie; date=20100918" ; gene "SPAP14E8.02" ; product "FHA domain protein Tos4 (predicted)" ; reserved_name "tos4" ;
chromosome1 GeneDB CDS 1922956 1923085 . + . mRNA SPAP14E8.02 ; colour "7" ;
chromosome1 GeneDB CDS 1923193 1924763 . + . mRNA SPAP14E8.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 1923086 1923091 . + . misc_feature unknown_1650 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1923178 1923192 . + . misc_feature unknown_1651 ; colour "6" ; note "ctaatattaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1924764 1924915 . + . mRNA SPAP14E8.02 ; ID "SPAP14E8.02" ; systematic_id "SPAP14E8.02" ; gene "SPAP14E8.02" ; note "mRNA from AU013275" ;
chromosome1 GeneDB 5'-UTR 1925065 1925101 . + . mRNA SPAP14E8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP14E8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1925102 1925932 . + . mRNA SPAP14E8.03 ; Alias "bos1" ; systematic_id "SPAP14E8.03" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005484; SNAP receptor activity
GO:0005789; endoplasmic reticulum membrane" ; gene "bos1 ||| SPAP14E8.03" ; primary_name "bos1" ; product "SNARE Bos1 (predicted)" ;
chromosome1 GeneDB CDS 1925102 1925125 . + . mRNA SPAP14E8.03 ; colour "7" ;
chromosome1 GeneDB CDS 1925177 1925273 . + . mRNA SPAP14E8.03 ; colour "7" ;
chromosome1 GeneDB CDS 1925346 1925932 . + . mRNA SPAP14E8.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 1925126 1925131 . + . misc_feature unknown_1652 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1925158 1925176 . + . misc_feature unknown_1653 ; colour "6" ; note "ttaatttgtatttcgctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1925274 1925279 . + . misc_feature unknown_1654 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1925327 1925345 . + . misc_feature unknown_1655 ; colour "6" ; note "ctaatgcaaatcaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1925933 1926495 . + . mRNA SPAP14E8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP14E8.03" ; systematic_id "SPAP14E8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1926661 1926738 . + . mRNA SPAP14E8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP14E8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1926739 1927752 . + . mRNA SPAP14E8.04 ; Alias "oma1" ; systematic_id "SPAP14E8.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0004222; metalloendopeptidase activity
GO:0006515; misfolded or incompletely synthesized protein catabolism" ; gene "oma1 ||| SPAP14E8.04" ; primary_name "oma1" ; product "metallopeptidase Oma1 (predicted)" ;
chromosome1 GeneDB CDS 1926739 1927752 . + . mRNA SPAP14E8.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1927753 1927818 . + . mRNA SPAP14E8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP14E8.04" ; systematic_id "SPAP14E8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1927872 1928017 . - . mRNA SPAP14E8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP14E8.05c" ; systematic_id "SPAP14E8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1928018 1928323 . - . mRNA SPAP14E8.05c ; systematic_id "SPAP14E8.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR085C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human tMEM14A and TMEM14c ortholog; date=20100718" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAP14E8.05c" ; product "UPF0136 family protein" ;
chromosome1 GeneDB CDS 1928018 1928323 . - . mRNA SPAP14E8.05c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 1928322 1928365 . - . mRNA SPAP14E8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP14E8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1928771 1929047 . - . mRNA SPAC3H1.01c ; Alias "orp3" ; ID "SPAC3H1.01c" ; db_xref "SPD:37/37D04" ; systematic_id "SPAC3H1.01c" ; primary_name "orp3" ; gene "orp3 ||| orc3 ||| SPAP14E8.06c ||| SPAC3H1.01c" ; note "mRNA from AF188642" ;
chromosome1 GeneDB CDS_parts 1929048 1931164 . - . mRNA SPAC3H1.01c ; systematic_id "SPAC3H1.01c" ; colour "7" ; gene "orp3 ||| orc3 ||| SPAP14E8.06c ||| SPAC3H1.01c" ; Alias "orc3" ; db_xref "SPD:37/37D04" ; synonym "orp3 ||| SPAP14E8.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0003688; DNA replication origin binding
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0005656; pre-replicative complex
GO:0031261; DNA replication preinitiation complex" ; primary_name "orc3" ; product "origin recognition complex subunit Orp3 (predicted)" ;
chromosome1 GeneDB CDS 1929048 1931084 . - . mRNA SPAC3H1.01c ; colour "7" ;
chromosome1 GeneDB CDS 1931129 1931164 . - . mRNA SPAC3H1.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 1930675 1930781 . + . misc_feature unknown_1656 ; note "nominal overlap with cosmid SPAC3H1 and plasmid SPAP14E8" ;
chromosome1 GeneDB misc_feature 1931085 1931101 . - . misc_feature unknown_1657 ; colour "6" ; note "ctaactaaattgtttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1931085 1931128 . - . intron SPAC3H1.01c ; Alias "orp3" ; db_xref "SPD:37/37D04" ; systematic_id "SPAC3H1.01c" ; primary_name "orp3" ; gene "orp3 ||| orc3 ||| SPAP14E8.06c ||| SPAC3H1.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1931123 1931128 . - . misc_feature unknown_1658 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1931165 1931267 . - . mRNA SPAC3H1.01c ; Alias "orp3" ; ID "SPAC3H1.01c" ; systematic_id "SPAC3H1.01c" ; primary_name "orp3" ; gene "orp3 ||| orc3 ||| SPAP14E8.06c ||| SPAC3H1.01c" ; note "mRNA from AF188642" ;
chromosome1 GeneDB CDS_parts 1931588 1934698 . - . mRNA SPAC3H1.02c ; db_xref "SPD:30/30A09" ; systematic_id "SPAC3H1.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL098C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; colour "7" ; GO "GO:0004222; metalloendopeptidase activity
GO:0006508; proteolysis
GO:0005737; cytoplasm" ; gene "SPAC3H1.02c" ; product "metallopeptidase (predicted)" ;
chromosome1 GeneDB CDS 1931588 1934698 . - . mRNA SPAC3H1.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1934697 1934911 . - . mRNA SPAC3H1.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H1.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1935352 1935356 . + . mRNA SPAC3H1.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H1.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1935357 1935797 . + . mRNA SPAC3H1.03 ; systematic_id "SPAC3H1.03" ; colour "10" ; gene "SPAC3H1.03 ||| mug151" ; Alias "mug151" ; db_xref "SPD:03/03G08" ; GO "GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mug151" ; product "mouse transcriptional regulator, HCNGP-like (predicted)" ;
chromosome1 GeneDB CDS 1935357 1935797 . + . mRNA SPAC3H1.03 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 1936012 1936075 . - . mRNA SPAC3H1.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H1.04c" ; systematic_id "SPAC3H1.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1936076 1937982 . - . mRNA SPAC3H1.04c ; systematic_id "SPAC3H1.04c" ; colour "7" ; gene "mdm31 ||| SPAC3H1.04c" ; note "PMID:16823372 predict a frameshift at base 1684, unconfirmed" ; Alias "mdm31" ; db_xref "SPD:37/37A01" ; GO "GO:0000002; mitochondrial genome maintenance
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR194W and YOR147W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:16823372; date=20090924" ; primary_name "mdm31" ; product "mitochondrial inner membrane protein Mdm31 (predicted)" ;
chromosome1 GeneDB CDS 1936076 1936234 . - . mRNA SPAC3H1.04c ; colour "7" ;
chromosome1 GeneDB CDS 1936336 1937982 . - . mRNA SPAC3H1.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 1936235 1936250 . - . misc_feature unknown_1659 ; colour "6" ; note "ctaatttttgatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1936330 1936335 . - . misc_feature unknown_1660 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1937981 1938157 . - . mRNA SPAC3H1.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H1.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1938900 1940394 . + . mRNA SPAC3H1.05 ; db_xref "SPD:24/24B09" ; systematic_id "SPAC3H1.05" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR117W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human ZMPSTE24 ortholog; date=20091106 ||| term=disease associated, progeroid disorders; date=20091106" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0004222; metalloendopeptidase activity
GO:0071586; CAAX-box protein processing" ; gene "SPAC3H1.05" ; product "CAAX prenyl protease (predicted)" ; EC_number "3.4.24.-" ;
chromosome1 GeneDB CDS 1938900 1939004 . + . mRNA SPAC3H1.05 ; colour "7" ;
chromosome1 GeneDB CDS 1939075 1940394 . + . mRNA SPAC3H1.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 1939005 1939010 . + . misc_feature unknown_1661 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1939060 1939074 . + . misc_feature unknown_1662 ; colour "6" ; note "ttaacgtttttatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1940395 1940411 . + . mRNA SPAC3H1.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H1.05" ; systematic_id "SPAC3H1.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1940521 1941016 . - . mRNA SPAC3H1.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H1.06c" ; systematic_id "SPAC3H1.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1941017 1942786 . - . mRNA SPAC3H1.06c ; db_xref "SPD:36/36C01" ; systematic_id "SPAC3H1.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCL069W and YGR224W and YPR198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0016021; integral to membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; gene "SPAC3H1.06c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB CDS 1941017 1942786 . - . mRNA SPAC3H1.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 1944150 1944230 . + . mRNA SPAC3H1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1944231 1945202 . + . mRNA SPAC3H1.07 ; systematic_id "SPAC3H1.07" ; colour "2" ; gene "SPAC3H1.07" ; Alias "aru1" ; db_xref "SPD:13/13H04" ; synonym "car3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, CAtabolism of Arginine, after cerevisiae; cv=name_description; date=20091016 ||| term=disease associated, argininemia; date=20091016 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=experimental tools, deletion solves arginine-conversion problem; db_xref=PMID:20460254; date=20100601" ; GO "GO:0019547; arginine catabolic process to ornithine
GO:0004053; arginase activity
GO:0000050; urea cycle" ; primary_name "aru1" ; product "arginase Aru1" ; EC_number "3.5.3.1" ;
chromosome1 GeneDB CDS 1944231 1945202 . + . mRNA SPAC3H1.07 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1945203 1945368 . + . mRNA SPAC3H1.07 ; ID "SPAC3H1.07" ; db_xref "SPD:13/13H04" ; systematic_id "SPAC3H1.07" ; gene "SPAC3H1.07" ; note "mRNA from AU010030" ;
chromosome1 GeneDB 3'-UTR 1945393 1945425 . - . mRNA SPAC3H1.08c ; ID "SPAC3H1.08c" ; db_xref "SPD:42/42H06" ; systematic_id "SPAC3H1.08c" ; gene "SPAC3H1.08c" ; note "mRNA from AU012855" ;
chromosome1 GeneDB CDS_parts 1945426 1946101 . - . mRNA SPAC3H1.08c ; db_xref "SPD:42/42H06" ; systematic_id "SPAC3H1.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe SPAC2C4.09; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC3H1.08c" ; product "DUF1640 family protein" ;
chromosome1 GeneDB CDS 1945426 1945852 . - . mRNA SPAC3H1.08c ; colour "10" ;
chromosome1 GeneDB CDS 1945893 1946101 . - . mRNA SPAC3H1.08c ; colour "10" ;
chromosome1 GeneDB misc_feature 1945853 1945864 . - . misc_feature unknown_1663 ; colour "6" ; note "ctaacgttatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1945853 1945892 . - . intron SPAC3H1.08c ; db_xref "SPD:42/42H06" ; systematic_id "SPAC3H1.08c" ; gene "SPAC3H1.08c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 1945887 1945892 . - . misc_feature unknown_1664 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1946100 1946298 . - . mRNA SPAC3H1.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H1.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1946682 1946818 . - . mRNA SPAC3H1.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H1.09c" ; systematic_id "SPAC3H1.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1946819 1948941 . - . mRNA SPAC3H1.09c ; systematic_id "SPAC3H1.09c" ; colour "2" ; gene "SPAC3H1.09c" ; Alias "avt3" ; db_xref "SPD:46/46E10" ; GO "GO:0032974; amino acid export from vacuole
GO:0000329; vacuolar membrane
GO:0015171; amino acid transmembrane transporter activity
GO:0034639; amino acid efflux transmembrane transporter activity
GO:0006995; cellular response to nitrogen starvation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL146W and YNL101W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sporulation defects; allele=SPAC3H1.09|SPBC16H5.07|SPAC2G11. 13|leucine_auxotroph; qualifier=triple_mutant; db_xref=PMID:19778961; date=20091126 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "avt3" ; product "vacuolar amino acid efflux transporter Avt3" ;
chromosome1 GeneDB CDS 1946819 1947011 . - . mRNA SPAC3H1.09c ; colour "2" ;
chromosome1 GeneDB CDS 1947060 1947754 . - . mRNA SPAC3H1.09c ; colour "2" ;
chromosome1 GeneDB CDS 1947795 1947981 . - . mRNA SPAC3H1.09c ; colour "2" ;
chromosome1 GeneDB CDS 1948046 1948941 . - . mRNA SPAC3H1.09c ; colour "2" ;
chromosome1 GeneDB misc_feature 1947012 1947023 . - . misc_feature unknown_1665 ; colour "6" ; note "ctaacaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1947054 1947059 . - . misc_feature unknown_1666 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1947755 1947768 . - . misc_feature unknown_1667 ; colour "6" ; note "ctaaatgcattaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1947789 1947794 . - . misc_feature unknown_1668 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1947982 1947996 . - . misc_feature unknown_1669 ; colour "6" ; note "ttaaccgatgtctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1948040 1948045 . - . misc_feature unknown_1670 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1948940 1949101 . - . mRNA SPAC3H1.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H1.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1949598 1949755 . + . mRNA SPAC3H1.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H1.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1949756 1951000 . + . mRNA SPAC3H1.10 ; db_xref "SPD:19/19H04" ; systematic_id "SPAC3H1.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "2" ; GO "GO:0016756; glutathione gamma- glutamylcysteinyltransferase activity
GO:0071276; cellular response to cadmium ion
GO:0071276; cellular response to cadmium ion
GO:0046938; phytochelatin biosynthesis" ; gene "SPAC3H1.10" ; product "phytochelatin synthetase" ;
chromosome1 GeneDB CDS 1949756 1951000 . + . mRNA SPAC3H1.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1951001 1951137 . + . mRNA SPAC3H1.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H1.10" ; systematic_id "SPAC3H1.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 1951001 1959310 . + . misc_feature unknown_1671 ; note "gene free region" ;
chromosome1 GeneDB misc_feature 1952016 1957636 . + . misc_feature unknown_1672 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG359-61 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_feature 1955742 1955880 . - . misc_feature unknown_1673 ; note "slightly palindromic region at the middle of gene free region; causing self match" ;
chromosome1 GeneDB 5'-UTR 1957462 1959310 . + . mRNA SPAC3H1.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H1.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1959311 1961059 . + . mRNA SPAC3H1.11 ; systematic_id "SPAC3H1.11" ; colour "2" ; gene "hsr1 ||| SPAC3H1.11" ; Alias "hsr1" ; db_xref "SPD:36/36A04" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0043619; regulation of transcription from RNA polymerase II promoter in response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20061206 ||| term=zf-C2H2 type; date=20070129 ||| term=orthologous to S. cerevisiae YER130C and YMR037C and YKL062W; date=19700101 ||| term=gene expression, transcriptionally regulated by Pap1; evidence=IEP; db_xref=PMID:18003976; cv=gene_ex; date=20080512 ||| term=gene expression, transcriptionally regulated by Prr1; evidence=IEP; db_xref=PMID:18003976; cv=gene_ex; date=20080512 ||| term=gene expression, transcriptionally regulated by Atf1; evidence=IEP; db_xref=PMID:18003976; date=20080512 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "hsr1" ; product "transcription factor Hsr1" ;
chromosome1 GeneDB CDS 1959311 1961059 . + . mRNA SPAC3H1.11 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1961060 1961475 . + . mRNA SPAC3H1.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H1.11" ; systematic_id "SPAC3H1.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1961710 1965105 . - . mRNA SPAC3H1.12c ; systematic_id "SPAC3H1.12c" ; colour "2" ; gene "snt2 ||| SPAC3H1.12c" ; Alias "snt2" ; db_xref "SPD:48/48C03" ; GO "GO:0006338; chromatin remodeling
GO:0048189; Lid2 complex
GO:0000790; nuclear chromatin
GO:0006355; regulation of transcription, DNA- dependent
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=Myb family; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YGL131C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snt2" ; product "Lid2 complex subunit Snt2" ;
chromosome1 GeneDB CDS 1961710 1965105 . - . mRNA SPAC3H1.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1965106 1965172 . + . mRNA SPAC3H1.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H1.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1965173 1966338 . + . mRNA SPAC3H1.13 ; systematic_id "SPAC3H1.13" ; colour "7" ; gene "ppk13 ||| SPAC3H1.13" ; Alias "ppk13" ; db_xref "SPD:18/18D08" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YPL236C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk13" ; product "serine/threonine protein kinase Ppk13 (predicted)" ;
chromosome1 GeneDB CDS 1965173 1965294 . + . mRNA SPAC3H1.13 ; colour "7" ;
chromosome1 GeneDB CDS 1965334 1965803 . + . mRNA SPAC3H1.13 ; colour "7" ;
chromosome1 GeneDB CDS 1965845 1966050 . + . mRNA SPAC3H1.13 ; colour "7" ;
chromosome1 GeneDB CDS 1966102 1966338 . + . mRNA SPAC3H1.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 1965295 1965300 . + . misc_feature unknown_1674 ; colour "6" ; note "gtagag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1965323 1965333 . + . misc_feature unknown_1675 ; colour "6" ; note "ctaatttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1965804 1965809 . + . misc_feature unknown_1676 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1965832 1965844 . + . misc_feature unknown_1677 ; colour "6" ; note "ctaattgcatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1966051 1966056 . + . misc_feature unknown_1678 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1966090 1966101 . + . misc_feature unknown_1679 ; colour "6" ; note "ttaacatgctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1966339 1966426 . + . mRNA SPAC3H1.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H1.13" ; systematic_id "SPAC3H1.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 1966483 1966635 . - . misc_RNA SPNCRNA.530 ; systematic_id "SPNCRNA.530" ; controlled_curation "term=warning, new gene; db_xref=PMID:18641648; date=20100426" ; product "non-coding RNA (predicted)" ; note "transfrag I" ;
chromosome1 GeneDB 5'-UTR 1966920 1967021 . + . mRNA SPAC3H1.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H1.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1967022 1967609 . + . mRNA SPAC3H1.14 ; systematic_id "SPAC3H1.14" ; colour "7" ; gene "SPAC9G1.01 ||| SPAC3H1.14" ; Alias "SPAC9G1.01" ; db_xref "SPD:06/06D06" ; synonym "SPAC9G1.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR066C and YBR105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030659; cytoplasmic vesicle membrane
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0006623; protein targeting to vacuole
GO:0007039; vacuolar protein catabolic process
GO:0051469; vesicle fusion with vacuole
GO:0016192; vesicle-mediated transport
GO:0034657; GID complex
GO:0045721; negative regulation of gluconeogenesis" ; primary_name "SPAC9G1.01" ; product "cytoplasmic vesicle protein, Vid24 family (predicted)" ;
chromosome1 GeneDB CDS 1967022 1967609 . + . mRNA SPAC3H1.14 ; colour "7" ;
chromosome1 GeneDB misc_feature 1967134 1967594 . + . misc_feature unknown_1680 ; note "nominal overlap with cosmid SPAC3H1 and cosmid SPAC9G1" ;
chromosome1 GeneDB 3'-UTR 1967610 1967858 . + . mRNA SPAC3H1.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H1.14" ; systematic_id "SPAC3H1.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1968845 1969117 . + . mRNA SPAC9G1.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9G1.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1969118 1973323 . + . mRNA SPAC9G1.02 ; systematic_id "SPAC9G1.02" ; colour "2" ; db_xref "SPD:39/39E02" ; Alias "wis4" ; synonym "wak1 ||| wik1" ; GO "GO:0007346; regulation of progression through mitotic cell cycle
GO:0004709; MAP kinase kinase kinase activity
GO:0031098; stress-activated protein kinase signaling pathway
GO:0000165; MAPKKK cascade
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0051403; stress-activated MAPK cascade
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR073C and YNR031C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Wis1; qualifier=activates; db_xref=PMID:17072883; date=20100427" ; primary_name "wis4" ; product "MAP kinase kinase kinase Wis4" ;
chromosome1 GeneDB CDS 1969118 1973323 . + . mRNA SPAC9G1.02 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1973324 1973467 . + . mRNA SPAC9G1.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9G1.02" ; systematic_id "SPAC9G1.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1973666 1974054 . - . mRNA SPAC9G1.03c ; systematic_id "SPAC9G1.03c" ; colour "7" ; gene "rpl3001 ||| rpl30-1 ||| rpl30 ||| SPAC9G1.03c" ; Alias "rpl3001" ; db_xref "SPD:02/02H06" ; synonym "rpl30-1 ||| rpl30" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0006364; rRNA processing" ; primary_name "rpl3001" ; product "60S ribosomal protein L30 (predicted)" ;
chromosome1 GeneDB CDS 1973666 1973756 . - . mRNA SPAC9G1.03c ; colour "7" ;
chromosome1 GeneDB CDS 1973816 1974054 . - . mRNA SPAC9G1.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 1973757 1973772 . - . misc_feature unknown_1681 ; colour "6" ; note "ctaactgagttattag, splice branch and acceptor" ;
chromosome1 GeneDB intron 1973757 1973815 . - . intron SPAC9G1.03c ; Alias "rpl3001" ; db_xref "SPD:02/02H06" ; systematic_id "SPAC9G1.03c" ; primary_name "rpl3001" ; gene "rpl3001 ||| rpl30-1 ||| rpl30 ||| SPAC9G1.03c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1973810 1973815 . - . misc_feature unknown_1682 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1974053 1974073 . - . mRNA SPAC9G1.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9G1.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 1974124 1974131 . - . promoter unknown_1683 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB promoter 1974138 1974147 . - . promoter unknown_1684 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB 5'-UTR 1975212 1975284 . + . mRNA SPAC9G1.04 ; ID "SPAC9G1.04" ; systematic_id "SPAC9G1.04" ; note "mRNA from SPOXA1SP3" ;
chromosome1 GeneDB CDS_parts 1975285 1976550 . + . mRNA SPAC9G1.04 ; systematic_id "SPAC9G1.04" ; colour "2" ; db_xref "SPD:20/20C03" ; Alias "oxa101" ; synonym "oxa1 ||| oxa1-1 ||| oxa1sp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER154W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008535; cytochrome c oxidase complex assembly
GO:0005743; mitochondrial inner membrane
GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane" ; primary_name "oxa101" ; product "mitochondrial inner membrane translocase Oxa101" ;
chromosome1 GeneDB CDS 1975285 1975313 . + . mRNA SPAC9G1.04 ; colour "2" ;
chromosome1 GeneDB CDS 1975379 1976129 . + . mRNA SPAC9G1.04 ; colour "2" ;
chromosome1 GeneDB CDS 1976206 1976550 . + . mRNA SPAC9G1.04 ; colour "2" ;
chromosome1 GeneDB misc_feature 1975314 1975319 . + . misc_feature unknown_1685 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 1975314 1975378 . + . intron SPAC9G1.04 ; db_xref "SPD:20/20C03" ; systematic_id "SPAC9G1.04" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1975366 1975378 . + . misc_feature unknown_1686 ; colour "6" ; note "ttgaccaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1976130 1976135 . + . misc_feature unknown_1687 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 1976130 1976205 . + . intron SPAC9G1.04 ; db_xref "SPD:20/20C03" ; systematic_id "SPAC9G1.04" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 1976187 1976205 . + . misc_feature unknown_1688 ; colour "6" ; note "ctaaccaaagatcaaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1976551 1976603 . + . mRNA SPAC9G1.04 ; ID "SPAC9G1.04" ; db_xref "SPD:20/20C03" ; systematic_id "SPAC9G1.04" ; note "mRNA from SPOXA1SP3" ;
chromosome1 GeneDB 5'-UTR 1976875 1976901 . + . mRNA SPAC9G1.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9G1.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1976902 1979061 . + . mRNA SPAC9G1.05 ; db_xref "SPD:37/37F11" ; systematic_id "SPAC9G1.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030042; actin filament depolymerization
GO:0030479; actin cortical patch
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC9G1.05" ; product "actin cortical patch component Aip1 (predicted)" ;
chromosome1 GeneDB CDS 1976902 1977006 . + . mRNA SPAC9G1.05 ; colour "7" ;
chromosome1 GeneDB CDS 1977068 1977191 . + . mRNA SPAC9G1.05 ; colour "7" ;
chromosome1 GeneDB CDS 1977262 1977363 . + . mRNA SPAC9G1.05 ; colour "7" ;
chromosome1 GeneDB CDS 1977404 1977449 . + . mRNA SPAC9G1.05 ; colour "7" ;
chromosome1 GeneDB CDS 1977556 1977601 . + . mRNA SPAC9G1.05 ; colour "7" ;
chromosome1 GeneDB CDS 1977651 1978592 . + . mRNA SPAC9G1.05 ; colour "7" ;
chromosome1 GeneDB CDS 1978639 1979061 . + . mRNA SPAC9G1.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 1977007 1977012 . + . misc_feature unknown_1689 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1977053 1977067 . + . misc_feature unknown_1690 ; colour "6" ; note "ctaaatagtttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1977192 1977197 . + . misc_feature unknown_1691 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1977245 1977261 . + . misc_feature unknown_1692 ; colour "6" ; note "ctaatgatcaactatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1977364 1977369 . + . misc_feature unknown_1693 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1977389 1977403 . + . misc_feature unknown_1694 ; colour "6" ; note "ctaattgatgaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1977450 1977455 . + . misc_feature unknown_1695 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1977537 1977555 . + . misc_feature unknown_1696 ; colour "6" ; note "ctaatcttacttttaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1977602 1977607 . + . misc_feature unknown_1697 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1977638 1977650 . + . misc_feature unknown_1698 ; colour "6" ; note "ttaacggttacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1978593 1978598 . + . misc_feature unknown_1699 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1978608 1978638 . + . misc_feature unknown_1700 ; colour "6" ; note "ttaatttccataattattgacttttttag, splice branch and acc eptor" ;
chromosome1 GeneDB 3'-UTR 1979062 1979130 . + . mRNA SPAC9G1.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9G1.05" ; systematic_id "SPAC9G1.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1979243 1979363 . - . mRNA SPAC9G1.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9G1.06c" ; systematic_id "SPAC9G1.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1979364 1982107 . - . mRNA SPAC9G1.06c ; systematic_id "SPAC9G1.06c" ; colour "7" ; gene "cyk3 ||| SPAC9G1.06c" ; db_xref "SPD:47/47B08" ; Alias "cyk3" ; GO "GO:0005826; contractile ring
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL117W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "cyk3" ; product "cytokinesis protein Cyk3 (predicted)" ;
chromosome1 GeneDB CDS 1979364 1981957 . - . mRNA SPAC9G1.06c ; colour "7" ;
chromosome1 GeneDB CDS 1982041 1982107 . - . mRNA SPAC9G1.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 1981958 1981972 . - . misc_feature unknown_1701 ; colour "6" ; note "ttaatgtgttttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1982035 1982040 . - . misc_feature unknown_1702 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1982106 1982155 . - . mRNA SPAC9G1.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9G1.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1983035 1983181 . + . mRNA SPAC9G1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9G1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1983182 1984438 . + . mRNA SPAC9G1.07 ; db_xref "SPD:20/20A09" ; systematic_id "SPAC9G1.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC9G1.07" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 1983182 1984438 . + . mRNA SPAC9G1.07 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 1984439 1984542 . + . mRNA SPAC9G1.07 ; ID "SPAC9G1.07" ; db_xref "SPD:20/20A09" ; systematic_id "SPAC9G1.07" ; gene "SPAC9G1.07" ; note "mRNA from AU008959" ;
chromosome1 GeneDB CDS_parts 1984568 1985293 . - . mRNA SPAC9G1.08c ; db_xref "SPD:43/43A04" ; systematic_id "SPAC9G1.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0004620; phospholipase activity
GO:0044242; cellular lipid catabolic process" ; gene "SPAC9G1.08c" ; product "phospholipase (predicted)" ;
chromosome1 GeneDB CDS 1984568 1985293 . - . mRNA SPAC9G1.08c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 1984873 1985349 . - . mRNA SPAC9G1.15c ; db_xref "PMID:21270388" ; systematic_id "SPAC9G1.15c" ;
chromosome1 GeneDB CDS_parts 1985350 1985643 . - . mRNA SPAC9G1.15c ; Alias "mzt1" ; synonym "tam4" ; systematic_id "SPAC9G1.15c" ; controlled_curation "term=name description, name derived form human ortholog MOZART; db_xref=PMID:20360068; cv=name_description; date=20100324 ||| term=species distribution, conserved in Fungi; date=20100805 ||| term=species distribution, conserved in Metazoa; date=20100805 ||| term=species distribution, conserved in Vertebrates; date=20100805 ||| term=species distribution, conserved in Eukaryotes; date=20100805 ||| term=species distribution, conserved in Eukaryotes only; date=20100805 ||| term=human MOZART1 ortholog; db_xref=PMID:20360068; date=20100324 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902 ||| term=warning, new gene; db_xref=PMID:20360068; date=20101207 ||| term=no apparent S. cerevisiae ortholog; date=20090716 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; GO "GO:0033566; gamma tubulin complex localization
GO:0000930; gamma-tubulin complex
GO:0090307; spindle assembly involved in mitosis
GO:0000070; mitotic sister chromatid segregation" ; colour "7" ; primary_name "mzt1" ; product "mitotic spindle organizing protein Mzt1 (predicted)" ;
chromosome1 GeneDB CDS 1985350 1985643 . - . mRNA SPAC9G1.15c ; colour "7" ;
chromosome1 GeneDB CDS_parts 1985757 1987228 . + . mRNA SPAC9G1.09 ; systematic_id "SPAC9G1.09" ; colour "2" ; gene "sid1 ||| SPAC9G1.09" ; Alias "sid1" ; db_xref "SPD:23/23F12" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0071775; regulation of cell cycle cytokinesis
GO:0005515; protein binding
GO:0005816; spindle pole body
GO:0031028; septation initiation signaling
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9649519; date=19700101 ||| term=phenotype, septum initiation defective; cv=phenotype; db_xref=PMID:9649519; date=20091006 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10459013; date=20100709 ||| term=phenotype, multinucleate; qualifier=deletion; db_xref=PMID:10459013; date=20100709 ||| term=GCK subfamily; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Septum Initiation Defective; db_xref=PMID:9649519; cv=name_description; date=20091006" ; primary_name "sid1" ; product "PAK-related GC kinase Sid1" ;
chromosome1 GeneDB CDS 1985757 1985873 . + . mRNA SPAC9G1.09 ; colour "2" ;
chromosome1 GeneDB CDS 1985930 1987228 . + . mRNA SPAC9G1.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 1985874 1985879 . + . misc_feature unknown_1703 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1985917 1985929 . + . misc_feature unknown_1704 ; colour "6" ; note "cttacagttgcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 1987325 1987362 . - . mRNA SPAC9G1.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9G1.10c" ; systematic_id "SPAC9G1.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1987363 1990975 . - . mRNA SPAC9G1.10c ; db_xref "SPD:48/48E02" ; systematic_id "SPAC9G1.10c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR109W; date=19700101 ||| term=PQQ repeat; qualifier=inferred from context; date=20070723 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0006897; endocytosis
GO:0046856; phosphoinositide dephosphorylation
GO:0031505; cell wall organization and biogenesis
GO:0004439; phosphoinositide 5-phosphatase activity
GO:0048017; inositol lipid-mediated signaling
GO:0046488; phosphatidylinositol metabolism" ; gene "SPAC9G1.10c" ; product "inositol polyphosphate phosphatase (predicted)" ;
chromosome1 GeneDB CDS 1987363 1987471 . - . mRNA SPAC9G1.10c ; colour "7" ;
chromosome1 GeneDB CDS 1987509 1990975 . - . mRNA SPAC9G1.10c ; colour "7" ;
chromosome1 GeneDB misc_feature 1987472 1987483 . - . misc_feature unknown_1705 ; colour "6" ; note "ctaaccaaccag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1987503 1987508 . - . misc_feature unknown_1706 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1990974 1991065 . - . mRNA SPAC9G1.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9G1.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1991670 1991786 . - . mRNA SPAC9G1.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9G1.11c" ; systematic_id "SPAC9G1.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1991787 1992929 . - . mRNA SPAC9G1.11c ; systematic_id "SPAC9G1.11c" ; colour "2" ; gene "spn4 ||| SPAC9G1.11c" ; Alias "spn4" ; db_xref "SPD:18/18A09" ; GO "GO:0005525; GTP binding
GO:0005940; septin ring
GO:0031105; septin complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15385632; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; date=20100727 ||| term=orthologous to S. cerevisiae YHR107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spn4" ; product "septin Spn4" ;
chromosome1 GeneDB CDS 1991787 1992929 . - . mRNA SPAC9G1.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 1992928 1993046 . - . mRNA SPAC9G1.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9G1.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 1993707 1993929 . + . mRNA SPAC9G1.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9G1.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 1993930 1995024 . + . mRNA SPAC9G1.12 ; systematic_id "SPAC9G1.12" ; colour "2" ; gene "cpd1 ||| SPAC9G1.12" ; Alias "cpd1" ; db_xref "SPD:17/17B09" ; GO "GO:0005634; nucleus
GO:0031515; tRNA (m1A) methyltransferase complex
GO:0016429; tRNA (adenine-N1-)-methyltransferase activity
GO:0030488; tRNA methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL125C; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "cpd1" ; product "tRNA (m1A) methyltransferase complex catalytic subunit Cpd1" ; EC_number "2.1.1.36" ;
chromosome1 GeneDB CDS 1993930 1995024 . + . mRNA SPAC9G1.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 1995025 1995083 . + . mRNA SPAC9G1.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9G1.12" ; systematic_id "SPAC9G1.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 1995130 1995207 . - . mRNA SPAC9G1.13c ; ID "SPAC9G1.13c" ; db_xref "SPD:44/44G09" ; systematic_id "SPAC9G1.13c" ; gene "SPAC9G1.13c ||| swc4" ; note "mRNA from AU011358" ;
chromosome1 GeneDB CDS_parts 1995208 1996683 . - . mRNA SPAC9G1.13c ; systematic_id "SPAC9G1.13c" ; colour "2" ; gene "SPAC9G1.13c ||| swc4" ; db_xref "SPD:44/44G09" ; Alias "swc4" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0006338; chromatin remodeling
GO:0006281; DNA repair
GO:0000812; Swr1 complex
GO:0035267; NuA4 histone acetyltransferase complex
GO:0043486; histone exchange
GO:0016573; histone acetylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YGR002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230" ; primary_name "swc4" ; product "Swr1 complex subunit Swc4" ;
chromosome1 GeneDB CDS 1995208 1996148 . - . mRNA SPAC9G1.13c ; colour "2" ;
chromosome1 GeneDB CDS 1996191 1996268 . - . mRNA SPAC9G1.13c ; colour "2" ;
chromosome1 GeneDB CDS 1996325 1996413 . - . mRNA SPAC9G1.13c ; colour "2" ;
chromosome1 GeneDB CDS 1996478 1996683 . - . mRNA SPAC9G1.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 1996149 1996162 . - . misc_feature unknown_1707 ; colour "6" ; note "ctaatttgttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1996319 1996324 . - . misc_feature unknown_1708 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 1996414 1996424 . - . misc_feature unknown_1709 ; colour "6" ; note "ctaatttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1996472 1996477 . - . misc_feature unknown_1710 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 1997255 1999342 . - . mRNA SPAC767.01c ; systematic_id "SPAC767.01c" ; colour "2" ; gene "vps1 ||| SPAC9G1.14c ||| SPAC767.01c" ; note "term=WARNING discrepancy between published sequence and genome sequence the genome sequence is almost certainly incorrect and will be checked and fixed in the next round of sequencing updates; qualifier=pending; db_xref=PMID:18088324; date=20080116" ; Alias "vps1" ; db_xref "SPD:27/27G07" ; synonym "SPAC9G1.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR001C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:18088324; date=20090202 ||| term=phenotype, resistance to thiabendazole, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421" ; GO "GO:0005737; cytoplasm
GO:0003924; GTPase activity
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0006944; membrane fusion
GO:0007031; peroxisome organization and biogenesis
GO:0045053; protein retention in Golgi
GO:0006623; protein targeting to vacuole
GO:0003774; motor activity" ; primary_name "vps1" ; product "dynamin family protein Vps1" ;
chromosome1 GeneDB CDS 1997255 1999198 . - . mRNA SPAC767.01c ; colour "2" ;
chromosome1 GeneDB CDS 1999250 1999342 . - . mRNA SPAC767.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 1997707 1998118 . + . misc_feature unknown_1711 ; note "nominal overlap with cosmid SPAC9G1 and cosmid SPAC767" ;
chromosome1 GeneDB misc_feature 1999199 1999213 . - . misc_feature unknown_1712 ; colour "6" ; note "ctaataaattgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 1999244 1999249 . - . misc_feature unknown_1713 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 1999341 1999536 . - . mRNA SPAC767.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC767.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 1999638 1999964 . + . LTR unknown_1714 ; note "Tf1-type LTR" ;
chromosome1 GeneDB misc_feature 1999711 2000231 . + . misc_feature unknown_1715 ; note "nominal overlap with cosmid SPAC767 and cosmid SPAC17H9" ;
chromosome1 GeneDB 5'-UTR 2000746 2000984 . + . mRNA SPAC17H9.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2000985 2004593 . + . mRNA SPAC17H9.01 ; systematic_id "SPAC17H9.01" ; colour "2" ; gene "cid16 ||| SPAC17H9.01" ; Alias "cid16" ; db_xref "SPD:48/48E01" ; GO "GO:0004652; polynucleotide adenylyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cid16" ; product "poly(A) polymerase Cid16 (predicted)" ;
chromosome1 GeneDB CDS 2000985 2004593 . + . mRNA SPAC17H9.01 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2004594 2004811 . + . mRNA SPAC17H9.01 ; Alias "cid16" ; ID "SPAC17H9.01" ; db_xref "SPD:48/48E01" ; systematic_id "SPAC17H9.01" ; primary_name "cid16" ; gene "cid16 ||| SPAC17H9.01" ; note "mRNA from AU010251" ;
chromosome1 GeneDB CDS_parts 2004838 2007930 . + . mRNA SPAC17H9.02 ; db_xref "SPD:30/30A02" ; systematic_id "SPAC17H9.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YJL050W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0031499; TRAMP complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing
GO:0071049; nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
GO:0043630; ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolism
GO:0016078; tRNA catabolism" ; gene "SPAC17H9.02" ; product "TRAMP complex ATP-dependent RNA helicase (predicted)" ;
chromosome1 GeneDB CDS 2004838 2007930 . + . mRNA SPAC17H9.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2008116 2008148 . - . mRNA SPAC17H9.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17H9.03c" ; systematic_id "SPAC17H9.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2008149 2008841 . - . mRNA SPAC17H9.03c ; systematic_id "SPAC17H9.03c" ; colour "2" ; gene "rdl1 ||| SPAC17H9.03c" ; note "highly conserved region A L/F M M * L * R K/E C/L R/K IL* R D/K L/F * L/M/V A V **************KPAL with vertebrate Trad" ; Alias "rdl1" ; db_xref "SPD:08/08A08" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0000725; recombinational repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR376C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TRAD ortholog; date=20091112" ; primary_name "rdl1" ; product "RAD51D-like protein 1" ;
chromosome1 GeneDB CDS 2008149 2008841 . - . mRNA SPAC17H9.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2008840 2009105 . - . mRNA SPAC17H9.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2009437 2009904 . - . mRNA SPAC17H9.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17H9.04c" ; systematic_id "SPAC17H9.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2009905 2011719 . - . mRNA SPAC17H9.04c ; db_xref "SPD:36/36F05" ; systematic_id "SPAC17H9.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-ranBP; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YDL167C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC17H9.04c" ; product "RNA-binding protein" ;
chromosome1 GeneDB CDS 2009905 2011719 . - . mRNA SPAC17H9.04c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2011718 2011855 . - . mRNA SPAC17H9.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 2012006 2012346 . + . LTR unknown_1716 ; colour "4" ; note "Tf2 type" ;
chromosome1 GeneDB 5'-UTR 2012859 2012931 . + . mRNA SPAC17H9.05 ; Alias "ebp2" ; ID "SPAC17H9.05" ; systematic_id "SPAC17H9.05" ; primary_name "ebp2" ; gene "ebp2 ||| SPAC17H9.05" ; note "mRNA from AU010733" ;
chromosome1 GeneDB CDS_parts 2012932 2013933 . + . mRNA SPAC17H9.05 ; systematic_id "SPAC17H9.05" ; colour "7" ; gene "ebp2 ||| SPAC17H9.05" ; note "TAS Osami Niwa" ; Alias "ebp2" ; db_xref "SPD:14/14F11" ; GO "GO:0005730; nucleolus
; spindle pole body
GO:0005515; protein binding
GO:0006364; rRNA processing" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ebp2" ; product "rRNA processing protein Ebp2 (predicted)" ; reserved_name "ebp2" ;
chromosome1 GeneDB CDS 2012932 2013933 . + . mRNA SPAC17H9.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2013934 2014608 . + . mRNA SPAC17H9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17H9.05" ; systematic_id "SPAC17H9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2014206 2016138 . - . mRNA SPAC17H9.06c ; db_xref "SPD:37/37A09" ; systematic_id "SPAC17H9.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to C. neoformans CNBK2480; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005634; nucleus" ; gene "SPAC17H9.06c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 2014206 2014286 . - . mRNA SPAC17H9.06c ; colour "10" ;
chromosome1 GeneDB CDS 2014327 2014551 . - . mRNA SPAC17H9.06c ; colour "10" ;
chromosome1 GeneDB CDS 2014599 2015095 . - . mRNA SPAC17H9.06c ; colour "10" ;
chromosome1 GeneDB CDS 2015136 2016138 . - . mRNA SPAC17H9.06c ; colour "10" ;
chromosome1 GeneDB misc_feature 2014287 2014298 . - . misc_feature unknown_1717 ; colour "6" ; note "ctaactgcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2014321 2014326 . - . misc_feature unknown_1718 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2014552 2014565 . - . misc_feature unknown_1719 ; colour "6" ; note "ctaactttctaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2014593 2014598 . - . misc_feature unknown_1720 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2015096 2015111 . - . misc_feature unknown_1721 ; colour "6" ; note "ttaacgaataattaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2015130 2015135 . - . misc_feature unknown_1722 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2016137 2016313 . - . mRNA SPAC17H9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2016368 2016384 . + . mRNA SPAC17H9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2016385 2016941 . + . mRNA SPAC17H9.07 ; db_xref "SPD:05/05G08" ; systematic_id "SPAC17H9.07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL122C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006614; SRP-dependent cotranslational protein targeting to membrane
GO:0005786; signal recognition particle (sensu Eukaryota)" ; gene "SPAC17H9.07" ; product "signal recognition particle subunit Srp21 (predicted)" ;
chromosome1 GeneDB CDS 2016385 2016456 . + . mRNA SPAC17H9.07 ; colour "7" ;
chromosome1 GeneDB CDS 2016509 2016698 . + . mRNA SPAC17H9.07 ; colour "7" ;
chromosome1 GeneDB CDS 2016841 2016941 . + . mRNA SPAC17H9.07 ; colour "7" ;
chromosome1 GeneDB misc_feature 2016457 2016462 . + . misc_feature unknown_1723 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2016491 2016508 . + . misc_feature unknown_1724 ; colour "6" ; note "ctgacttttttcatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2016699 2016704 . + . misc_feature unknown_1725 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2016820 2016840 . + . misc_feature unknown_1726 ; colour "6" ; note "ctaacagtcatgttatatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2016942 2017466 . + . mRNA SPAC17H9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17H9.07" ; systematic_id "SPAC17H9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2018369 2019349 . + . mRNA SPAC17H9.08 ; db_xref "SPD:14/14B03" ; systematic_id "SPAC17H9.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Graves' disease; date=19700101 ||| term=orthologous to S. cerevisiae YHR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=19700101" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0035349; coenzyme A transmembrane transport
GO:0015228; coenzyme A transporter activity
GO:0006839; mitochondrial transport" ; gene "SPAC17H9.08" ; product "mitochondrial coenzyme A transporter (predicted)" ;
chromosome1 GeneDB CDS 2018369 2019349 . + . mRNA SPAC17H9.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2019500 2019757 . - . mRNA SPAC17H9.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17H9.09c" ; systematic_id "SPAC17H9.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2019665 2020886 . - . misc_feature unknown_1727 ; note "Primary transcript determined from EM_FUN:SPRAS X03 RAS gene." ;
chromosome1 GeneDB CDS_parts 2019758 2020488 . - . mRNA SPAC17H9.09c ; systematic_id "SPAC17H9.09c" ; colour "2" ; gene "ras1 ||| ste5 ||| SPAC17H9.09c" ; Alias "ras1" ; db_xref "SPD:43/43A06" ; synonym "ste5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, stubby cells; qualifier=deletion; cv=phenotype; db_xref=PMID:7923372; date=20090217 ||| term=target is Scd1; qualifier=activates; date=19700101 ||| term=target is Byr2; qualifier=activates; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=modification, palmitoylated; qualifier=predicted; cv=pt_mod; date=19700101 ||| term=orthologous to S. cerevisiae YOR101W and YNL098C; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=pathway, Ras1-Scd; cv=pathway; date=20080718 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human HRAS and KRAS and NRAS ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=phenotype, sterile; db_xref=PMID:3481018; date=20101013 ||| term=name description, STErile; db_xref=PMID:3481018; date=20101013" ; GO "GO:0071521; Cdc42 GTPase complex
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0000751; cell cycle arrest in response to pheromone
GO:0033205; cell cycle cytokinesis
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0006995; cellular response to nitrogen starvation
GO:0007163; establishment and/or maintenance of cell polarity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0031137; regulation of conjugation with cellular fusion
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0032488; Cdc42 protein signal tansduction
GO:0007051; spindle organization and biogenesis
GO:0030437; sporulation (sensu Fungi)" ; primary_name "ras1" ; product "GTPase Ras1" ;
chromosome1 GeneDB CDS 2019758 2020411 . - . mRNA SPAC17H9.09c ; colour "2" ;
chromosome1 GeneDB CDS 2020483 2020488 . - . mRNA SPAC17H9.09c ; colour "2" ;
chromosome1 GeneDB misc_feature 2020412 2020434 . - . misc_feature unknown_1728 ; colour "6" ; note "ctaatcaacgataatatttatag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 2020487 2020602 . - . mRNA SPAC17H9.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2021040 2021223 . - . mRNA SPAC17H9.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17H9.10c" ; systematic_id "SPAC17H9.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2021224 2024442 . - . mRNA SPAC17H9.10c ; systematic_id "SPAC17H9.10c" ; colour "2" ; db_xref "SPD:48/48A11" ; Alias "ddb1" ; GO "GO:0031465; Cul4B-RING ubiquitin ligase complex
GO:0070912; Ddb1-Ckn1 complex
GO:0070913; Ddb1-Wdr21 complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0008180; signalosome complex
GO:0034644; cellular response to UV
GO:0006279; premeiotic DNA synthesis
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0006282; regulation of DNA repair
GO:0007090; regulation of S phase of mitotic cell cycle
GO:0040020; regulation of meiosis
GO:0051445; regulation of progression through meiotic cell cycle
GO:0006974; response to DNA damage stimulus
GO:0006283; transcription-coupled nucleotide- excision repair" ; controlled_curation "term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:15805471; cv=phenotype; date=20090908 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12181326; date=20061128 ||| term=phenotype, mitotic cell cycle defects; db_xref=PMID:15805471; cv=phenotype; date=20090908 ||| term=phenotype, meiotic cell cycle defects; db_xref=PMID:15805471; cv=phenotype; date=20090908 ||| term=phenotype, genome stability defects; db_xref=PMID:15805471; cv=phenotype; date=20090908 ||| term=modification, ubiquitinated; cv=pt_mod; date=20061128 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human DDB1 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=rik1/ddb1 subfamily; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:12181326; date=20100705" ; primary_name "ddb1" ; product "damaged DNA binding protein Ddb1" ;
chromosome1 GeneDB CDS 2021224 2024442 . - . mRNA SPAC17H9.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2024441 2024618 . - . mRNA SPAC17H9.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB conflict 2025001 2025026 . + . conflict unknown_1729 ; citation "[1]" ; note "were 27 Ts in c607" ;
chromosome1 GeneDB 5'-UTR 2025220 2025334 . + . mRNA SPAC17H9.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2025335 2025760 . + . mRNA SPAC17H9.11 ; systematic_id "SPAC17H9.11" ; colour "2" ; gene "SPAC17H9.11" ; Alias "gmf1" ; db_xref "SPD:03/03E02" ; GO "GO:0000147; actin patch assembly
GO:0030479; actin cortical patch
GO:0034316; negative regulation of Arp2/3 complex mediated actin nucleation
GO:0003779; actin binding
GO:0071933; ARP 2/3 complex binding" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cofilin/tropomyosin family; date=19700101 ||| term=orthologous to S. cerevisiae YDR063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; db_xref=PMID:20517925; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); db_xref=PMID:20517925; date=20100608 ||| term=name description, mouse Glia Maturation Factor homolog; db_xref=PMID:20517925; date=20100608" ; primary_name "gmf1" ; product "cofilin/tropomyosin family Glia Maturation Factor homolog Gmf1" ;
chromosome1 GeneDB CDS 2025335 2025760 . + . mRNA SPAC17H9.11 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2025761 2025880 . + . mRNA SPAC17H9.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17H9.11" ; systematic_id "SPAC17H9.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2025993 2026162 . - . mRNA SPAC17H9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17H9.12c" ; systematic_id "SPAC17H9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2026163 2026963 . - . mRNA SPAC17H9.12c ; db_xref "SPD:10/10B02" ; systematic_id "SPAC17H9.12c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL150W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0005741; mitochondrial outer membrane
GO:0004128; cytochrome-b5 reductase activity
GO:0006696; ergosterol biosynthesis
GO:0034599; cellular response to oxidative stress" ; gene "SPAC17H9.12c" ; product "NADH-cytochrome reductase (predicted)" ; EC_number "1.6.2.2" ;
chromosome1 GeneDB CDS 2026163 2026963 . - . mRNA SPAC17H9.12c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2026962 2026982 . - . mRNA SPAC17H9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2027200 2027343 . - . mRNA SPAC17H9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17H9.13c" ; systematic_id "SPAC17H9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2027344 2028752 . - . mRNA SPAC17H9.13c ; db_xref "SPD:21/21G06" ; systematic_id "SPAC17H9.13c" ; colour "7" ; GO "GO:0004349; glutamate 5-kinase activity
GO:0006561; proline biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PUA domain; date=19700101 ||| term=orthologous to S. cerevisiae YDR300C and YHR033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAC17H9.13c" ; product "glutamate 5-kinase (predicted)" ; EC_number "2.7.2.11" ;
chromosome1 GeneDB CDS 2027344 2028198 . - . mRNA SPAC17H9.13c ; colour "7" ;
chromosome1 GeneDB CDS 2028275 2028573 . - . mRNA SPAC17H9.13c ; colour "7" ;
chromosome1 GeneDB CDS 2028698 2028752 . - . mRNA SPAC17H9.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 2028199 2028216 . - . misc_feature unknown_1730 ; colour "6" ; note "ctaactattaatatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2028269 2028274 . - . misc_feature unknown_1731 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2028574 2028588 . - . misc_feature unknown_1732 ; colour "6" ; note "ctaacattattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2028692 2028697 . - . misc_feature unknown_1733 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2028751 2028853 . - . mRNA SPAC17H9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2029143 2029228 . - . mRNA SPAC17H9.14c ; ID "SPAC17H9.14c" ; db_xref "SPD:16/16G04" ; systematic_id "SPAC17H9.14c" ; gene "SPAC17H9.14c" ; note "mRNA from AU007032" ;
chromosome1 GeneDB CDS_parts 2029229 2030308 . - . mRNA SPAC17H9.14c ; db_xref "SPD:16/16G04" ; systematic_id "SPAC17H9.14c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YOL088C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0015035; protein disulfide oxidoreductase activity
GO:0003756; protein disulfide isomerase activity
GO:0005783; endoplasmic reticulum
GO:0006457; protein folding
GO:0034599; cellular response to oxidative stress" ; gene "SPAC17H9.14c" ; product "protein disulfide isomerase" ; EC_number "5.3.4.1" ;
chromosome1 GeneDB CDS 2029229 2030308 . - . mRNA SPAC17H9.14c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2030309 2030361 . - . mRNA SPAC17H9.14c ; ID "SPAC17H9.14c" ; systematic_id "SPAC17H9.14c" ; gene "SPAC17H9.14c" ; note "mRNA from AU011099" ;
chromosome1 GeneDB misc_RNA 2030502 2030865 . + . misc_RNA SPNCRNA.184 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.184" ; synonym "SPNG371" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2031108 2031212 . + . mRNA SPAC17H9.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2031213 2031708 . + . mRNA SPAC17H9.16 ; systematic_id "SPAC17H9.16" ; colour "7" ; gene "tom22 ||| SPAC17H9.16" ; Alias "tom22" ; db_xref "SPD:04/04G09" ; GO "GO:0015450; protein translocase activity
GO:0030150; protein import into mitochondrial matrix
GO:0005742; mitochondrial outer membrane translocase complex
GO:0005047; signal recognition particle binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL131W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tom22" ; product "mitochondrial TOM complex subunit Tom22 (predicted)" ;
chromosome1 GeneDB CDS 2031213 2031605 . + . mRNA SPAC17H9.16 ; colour "7" ;
chromosome1 GeneDB CDS 2031667 2031708 . + . mRNA SPAC17H9.16 ; colour "7" ;
chromosome1 GeneDB misc_feature 2031606 2031611 . + . misc_feature unknown_1734 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2031647 2031666 . + . misc_feature unknown_1735 ; colour "6" ; note "ctattctcaccatgttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2031709 2032097 . + . mRNA SPAC17H9.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17H9.16" ; systematic_id "SPAC17H9.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2032009 2033228 . - . mRNA SPAC17H9.17c ; systematic_id "SPAC17H9.17c" ; colour "7" ; gene "mdm10 ||| SPAC17H9.17c" ; Alias "mdm10" ; db_xref "SPD:44/44A08" ; GO "GO:0032865; Mdm10/Mdm12/Mmm1 complex
GO:0005741; mitochondrial outer membrane
GO:0001401; mitochondrial sorting and assembly machinery complex
GO:0000002; mitochondrial genome maintenance
GO:0000001; mitochondrion inheritance
GO:0007005; mitochondrion organization and biogenesis
GO:0045040; protein import into mitochondrial outer membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL010C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mdm10" ; product "Mdm10/Mdm12/Mmm1 complex subunit Mdm10 (predicted)" ;
chromosome1 GeneDB CDS 2032009 2032629 . - . mRNA SPAC17H9.17c ; colour "7" ;
chromosome1 GeneDB CDS 2032688 2033082 . - . mRNA SPAC17H9.17c ; colour "7" ;
chromosome1 GeneDB CDS 2033132 2033228 . - . mRNA SPAC17H9.17c ; colour "7" ;
chromosome1 GeneDB misc_feature 2032630 2032640 . - . misc_feature unknown_1736 ; colour "6" ; note "cttacgctcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2032682 2032687 . - . misc_feature unknown_1737 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2033083 2033096 . - . misc_feature unknown_1738 ; colour "6" ; note "cttacaaacaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2033126 2033131 . - . misc_feature unknown_1739 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2033227 2033308 . - . mRNA SPAC17H9.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2033638 2033955 . - . mRNA SPAC17H9.18c ; db_xref "SPD:42/42A04" ; systematic_id "SPAC17H9.18c" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPAC17H9.18c" ; product "dubious" ;
chromosome1 GeneDB CDS 2033638 2033955 . - . mRNA SPAC17H9.18c ; colour "6" ;
chromosome1 GeneDB 3'-UTR 2033768 2034177 . - . mRNA SPAC17H9.19c ; Alias "cdt2" ; ID "SPAC17H9.19c" ; db_xref "SPD:23/23G01" ; systematic_id "SPAC17H9.19c" ; primary_name "cdt2" ; gene "cdt2 ||| SPAC17H9.19c ||| sev2" ; note "mRNA from SPWDRP" ;
chromosome1 GeneDB CDS_parts 2034178 2035650 . - . mRNA SPAC17H9.19c ; systematic_id "SPAC17H9.19c" ; colour "2" ; gene "cdt2 ||| SPAC17H9.19c ||| sev2" ; Alias "cdt2" ; db_xref "SPD:23/23G01" ; synonym "sev1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12871901; date=19700101 ||| term=phenotype, sensitive to HU; qualifier=deletion; cv=phenotype; db_xref=PMID:12871901; date=20050413 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:12871901; date=20100727 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; db_xref=PMID:8313888; cv=gene_ex; date=20050413 ||| term=misc, degradation is independent of association with Pcu4-DDb1-CSN complex; db_xref=PMID:8313888; date=20050413 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, ubiquitinated; db_xref=PMID:16252005; cv=pt_mod; date=19700101 ||| term=phenotype, sporulation defects; db_xref=PMID:12871901; date=20101022" ; GO "GO:0031464; Cul4A-RING ubiquitin ligase complex
GO:0032403; protein complex binding
GO:0005634; nucleus
GO:0008180; signalosome complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000077; DNA damage checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006261; DNA replication
GO:0006261; DNA replication
GO:0051443; positive regulation of ubiquitin ligase activity
GO:0034613; cellular protein localization
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0006974; response to DNA damage stimulus
GO:0006279; premeiotic DNA synthesis" ; primary_name "cdt2" ; product "WD repeat protein Cdt2" ;
chromosome1 GeneDB CDS 2034178 2035650 . - . mRNA SPAC17H9.19c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2035649 2035673 . - . mRNA SPAC17H9.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2036330 2036402 . + . mRNA SPAC17H9.20 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17H9.20" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2036403 2039520 . + . mRNA SPAC17H9.20 ; systematic_id "SPAC17H9.20" ; colour "2" ; gene "psc3 ||| SPAC17H9.20 ||| SPAC607.01" ; Alias "psc3" ; db_xref "SPD:47/47H04" ; synonym "SPAC607.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11069892; date=19700101 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YIL026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:16207082; date=20100425 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=phenotype, spindle elongation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721" ; GO "GO:0030892; mitotic cohesin complex
GO:0007064; mitotic sister chromatid cohesion
GO:0000794; condensed nuclear chromosome" ; primary_name "psc3" ; product "mitotic cohesin complex, non-SMC subunit Psc3" ;
chromosome1 GeneDB CDS 2036403 2036667 . + . mRNA SPAC17H9.20 ; colour "2" ;
chromosome1 GeneDB CDS 2036713 2036825 . + . mRNA SPAC17H9.20 ; colour "2" ;
chromosome1 GeneDB CDS 2036864 2036959 . + . mRNA SPAC17H9.20 ; colour "2" ;
chromosome1 GeneDB CDS 2037008 2037417 . + . mRNA SPAC17H9.20 ; colour "2" ;
chromosome1 GeneDB CDS 2037468 2039067 . + . mRNA SPAC17H9.20 ; colour "2" ;
chromosome1 GeneDB CDS 2039116 2039520 . + . mRNA SPAC17H9.20 ; colour "2" ;
chromosome1 GeneDB misc_feature 2036668 2036673 . + . misc_feature unknown_1740 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2036699 2036712 . + . misc_feature unknown_1741 ; colour "6" ; note "ctaacactgaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2036826 2036831 . + . misc_feature unknown_1742 ; colour "6" ; note "gtagag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2036851 2036863 . + . misc_feature unknown_1743 ; colour "6" ; note "ctaaatattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2037418 2037423 . + . misc_feature unknown_1744 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2037452 2037467 . + . misc_feature unknown_1745 ; colour "6" ; note "ctaacctttatattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2037993 2038225 . + . misc_feature unknown_1746 ; note "nominal overlap with cosmid SPAC17H9 and cosmid SPAC607" ;
chromosome1 GeneDB misc_feature 2039068 2039073 . + . misc_feature unknown_1747 ; colour "6" ; note "gtatac, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2039103 2039115 . + . misc_feature unknown_1748 ; colour "6" ; note "ctaacttgaccag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 2039615 2040404 . - . mRNA SPAC607.02c ; db_xref "SPD:10/10A02" ; systematic_id "SPAC607.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC607.02c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 2039615 2039885 . - . mRNA SPAC607.02c ; colour "10" ;
chromosome1 GeneDB CDS 2039932 2040300 . - . mRNA SPAC607.02c ; colour "10" ;
chromosome1 GeneDB CDS 2040349 2040404 . - . mRNA SPAC607.02c ; colour "10" ;
chromosome1 GeneDB misc_feature 2039886 2039897 . - . misc_feature unknown_1749 ; colour "6" ; note "ctaacatattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2039926 2039931 . - . misc_feature unknown_1750 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2040301 2040318 . - . misc_feature unknown_1751 ; colour "6" ; note "ctaacatttggttaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2040301 2040348 . - . intron SPAC607.02c ; db_xref "SPD:10/10A02" ; systematic_id "SPAC607.02c" ; gene "SPAC607.02c" ; note "intron confirmed by EST" ;
chromosome1 GeneDB misc_feature 2040343 2040348 . - . misc_feature unknown_1752 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2040860 2040935 . - . mRNA SPAC607.03c ; Alias "snu13" ; ID "SPAC607.03c" ; db_xref "SPD:05/05C08" ; systematic_id "SPAC607.03c" ; primary_name "snu13" ; gene "snu13 ||| SPAC607.03c" ; note "mRNA from AU011992" ;
chromosome1 GeneDB CDS_parts 2040936 2041463 . - . mRNA SPAC607.03c ; systematic_id "SPAC607.03c" ; colour "2" ; gene "snu13 ||| SPAC607.03c" ; Alias "snu13" ; db_xref "SPD:05/05C08" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snu13" ; product "U3 snoRNP-associated protein Snu13" ;
chromosome1 GeneDB CDS 2040936 2041295 . - . mRNA SPAC607.03c ; colour "2" ;
chromosome1 GeneDB CDS 2041446 2041463 . - . mRNA SPAC607.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 2041296 2041308 . - . misc_feature unknown_1753 ; colour "6" ; note "ctaacattgttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2041296 2041445 . - . intron SPAC607.03c ; Alias "snu13" ; db_xref "SPD:05/05C08" ; systematic_id "SPAC607.03c" ; primary_name "snu13" ; gene "snu13 ||| SPAC607.03c" ; note "confirmed mRNA from AU009244" ;
chromosome1 GeneDB misc_feature 2041440 2041445 . - . misc_feature unknown_1754 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2041464 2041514 . - . mRNA SPAC607.03c ; Alias "snu13" ; ID "SPAC607.03c" ; systematic_id "SPAC607.03c" ; primary_name "snu13" ; gene "snu13 ||| SPAC607.03c" ; note "mRNA from AU014527" ;
chromosome1 GeneDB misc_RNA 2041681 2041861 . + . misc_RNA SPNCRNA.185 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.185" ; synonym "SPNG373" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2042399 2042489 . + . mRNA SPAC607.04 ; ID "SPAC607.04" ; systematic_id "SPAC607.04" ; gene "SPAC607.04" ; note "mRNA from AU008389" ;
chromosome1 GeneDB CDS_parts 2042490 2043296 . + . mRNA SPAC607.04 ; db_xref "SPD:43/43C10" ; systematic_id "SPAC607.04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR173C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005634; nucleus
GO:0004428; inositol or phosphatidylinositol kinase activity
GO:0016310; phosphorylation
GO:0046488; phosphatidylinositol metabolic process" ; gene "SPAC607.04" ; product "inositol polyphosphate kinase (predicted)" ;
chromosome1 GeneDB CDS 2042490 2043296 . + . mRNA SPAC607.04 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2043812 2043841 . + . mRNA SPAC607.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC607.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2043842 2045041 . + . mRNA SPAC607.05 ; systematic_id "SPAC607.05" ; colour "2" ; gene "rpn9 ||| SPAC607.05" ; Alias "rpn9" ; db_xref "SPD:19/19B09" ; GO "GO:0005634; nucleus
GO:0008541; proteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR427W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpn9" ; product "19S proteasome regulatory subunit Rpn9" ;
chromosome1 GeneDB CDS 2043842 2043954 . + . mRNA SPAC607.05 ; colour "2" ;
chromosome1 GeneDB CDS 2044009 2045041 . + . mRNA SPAC607.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 2043955 2043960 . + . misc_feature unknown_1755 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2043999 2044008 . + . misc_feature unknown_1756 ; colour "6" ; note "ctgacgccag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2045042 2045077 . + . mRNA SPAC607.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC607.05" ; systematic_id "SPAC607.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2045186 2045209 . - . mRNA SPAC607.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC607.06c" ; systematic_id "SPAC607.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2045210 2047144 . - . mRNA SPAC607.06c ; db_xref "SPD:37/37A10" ; systematic_id "SPAC607.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL108W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC607.06c" ; product "metallopeptidase" ;
chromosome1 GeneDB CDS 2045210 2045245 . - . mRNA SPAC607.06c ; colour "10" ;
chromosome1 GeneDB CDS 2045284 2047035 . - . mRNA SPAC607.06c ; colour "10" ;
chromosome1 GeneDB CDS 2047094 2047144 . - . mRNA SPAC607.06c ; colour "10" ;
chromosome1 GeneDB misc_feature 2045246 2045258 . - . misc_feature unknown_1757 ; colour "6" ; note "ctaacattaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2045246 2045283 . - . intron SPAC607.06c ; db_xref "SPD:37/37A10" ; systematic_id "SPAC607.06c" ; gene "SPAC607.06c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2045278 2045283 . - . misc_feature unknown_1758 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2047036 2047045 . - . misc_feature unknown_1759 ; colour "6" ; note "ctaattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2047088 2047093 . - . misc_feature unknown_1760 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2047143 2047167 . - . mRNA SPAC607.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC607.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2047550 2047698 . - . mRNA SPAC607.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC607.07c" ; systematic_id "SPAC607.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2047699 2048130 . - . mRNA SPAC607.07c ; db_xref "SPD:03/03E09" ; systematic_id "SPAC607.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC607.07c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2047699 2048130 . - . mRNA SPAC607.07c ; colour "8" ;
chromosome1 GeneDB CDS_parts 2048421 2050160 . - . mRNA SPAC607.08c ; db_xref "SPD:35/35H05" ; systematic_id "SPAC607.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL034W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TMCO4 ortholog; date=20100718" ; colour "10" ; gene "SPAC607.08c" ; product "DUF726 family protein" ;
chromosome1 GeneDB CDS 2048421 2050160 . - . mRNA SPAC607.08c ; colour "10" ;
chromosome1 GeneDB CDS_parts 2050462 2051652 . - . mRNA SPAC607.09c ; systematic_id "SPAC607.09c" ; colour "2" ; gene "btn1 ||| SPAC607.09c" ; Alias "btn1" ; db_xref "SPD:18/18H12" ; GO "GO:0032153; cell division site
; cell tip
GO:0005737; cytoplasm
GO:0030176; integral to endoplasmic reticulum membrane
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0051666; actin cortical patch localization
GO:0015802; basic amino acid transport
GO:0006897; endocytosis
GO:0045324; late endosome to vacuole transport
GO:0031580; membrane raft distribution
GO:0034613; cellular protein localization
GO:0071775; regulation of cell cycle cytokinesis
GO:0034605; cellular response to heat
GO:0007035; vacuolar acidification
GO:0007035; vacuolar acidification
GO:0007033; vacuole organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16291725; date=19700101 ||| term=phenotype, sensitive to high temperature; qualifier=required; cv=phenotype; db_xref=PMID:18346214; date=20090501 ||| term=orthologous to S. cerevisiae YJL059W; date=19700101 ||| term=complementation, functionally complemented by human CLN3; db_xref=PMID:16291725; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=modification, farnesylated; qualifier=predicted; cv=pt_mod; date=19700101 ||| term=disease associated, neurological disorders; date=20091123 ||| term=disease associated, Batten's disease; date=19700101" ; primary_name "btn1" ; product "battenin CLN3 family protein" ;
chromosome1 GeneDB CDS 2050462 2051652 . - . mRNA SPAC607.09c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2051651 2051731 . - . mRNA SPAC607.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC607.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2052650 2053768 . + . misc_RNA SPNCRNA.186 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.186" ; synonym "SPNG375-76" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2052831 2053944 . + . mRNA SPAC607.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC607.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2053945 2057031 . + . mRNA SPAC607.10 ; systematic_id "SPAC607.10" ; colour "2" ; gene "spo3 ||| SPAC607.10" ; Alias "spo3" ; db_xref "SPD:29/29H12" ; GO "GO:0031321; prospore formation
GO:0005628; prospore membrane
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "spo3" ; product "sporulation protein Spo3" ;
chromosome1 GeneDB CDS 2053945 2057031 . + . mRNA SPAC607.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2057032 2057065 . + . mRNA SPAC607.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC607.10" ; systematic_id "SPAC607.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2057181 2057551 . + . misc_feature unknown_1761 ; note "nominal overlap with cosmid SPAC732 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 2057561 2057607 . + . mRNA SPAC732.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC732.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2057608 2058559 . + . mRNA SPAC732.01 ; systematic_id "SPAC732.01" ; colour "7" ; gene "vma11 ||| SPAC732.01" ; Alias "vma11" ; db_xref "SPD:13/13D06" ; GO "GO:0000220; vacuolar proton-transportting V-type ATPase, V0 domain
GO:0005524; ATP binding
GO:0046961; proton-transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL234C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vma11" ; product "V-type ATPase V0 proteolipid subunit (predicted)" ;
chromosome1 GeneDB CDS 2057608 2057624 . + . mRNA SPAC732.01 ; colour "7" ;
chromosome1 GeneDB CDS 2057664 2057695 . + . mRNA SPAC732.01 ; colour "7" ;
chromosome1 GeneDB CDS 2057728 2057837 . + . mRNA SPAC732.01 ; colour "7" ;
chromosome1 GeneDB CDS 2057893 2057928 . + . mRNA SPAC732.01 ; colour "7" ;
chromosome1 GeneDB CDS 2057974 2058044 . + . mRNA SPAC732.01 ; colour "7" ;
chromosome1 GeneDB CDS 2058337 2058559 . + . mRNA SPAC732.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 2057625 2057630 . + . misc_feature unknown_1762 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2057651 2057663 . + . misc_feature unknown_1763 ; colour "6" ; note "ctaacgaactaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2057696 2057701 . + . misc_feature unknown_1764 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2057717 2057727 . + . misc_feature unknown_1765 ; colour "6" ; note "ttaatagctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2057838 2057843 . + . misc_feature unknown_1766 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2057879 2057892 . + . misc_feature unknown_1767 ; colour "6" ; note "ctaatattttgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2057929 2057934 . + . misc_feature unknown_1768 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2057960 2057973 . + . misc_feature unknown_1769 ; colour "6" ; note "ctgacgataaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2058045 2058050 . + . misc_feature unknown_1770 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2058325 2058336 . + . misc_feature unknown_1771 ; colour "6" ; note "ttaaccaagtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2058560 2058739 . + . mRNA SPAC732.01 ; Alias "vma11" ; ID "SPAC732.01" ; db_xref "SPD:13/13D06" ; systematic_id "SPAC732.01" ; primary_name "vma11" ; gene "vma11 ||| SPAC732.01" ; note "mRNA from AU009530" ;
chromosome1 GeneDB 3'-UTR 2059209 2059250 . - . mRNA SPAC732.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC732.02c" ; systematic_id "SPAC732.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2059251 2060477 . - . mRNA SPAC732.02c ; db_xref "SPD:19/19E06" ; systematic_id "SPAC732.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL155C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004331; fructose-2,6-bisphosphate 2- phosphatase activity
GO:0006006; glucose metabolic process
GO:0005829; cytosol" ; colour "7" ; gene "SPAC732.02c" ; product "fructose-2,6-bisphosphate 2-phosphatase activity (predicted)" ;
chromosome1 GeneDB CDS 2059251 2060477 . - . mRNA SPAC732.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2060476 2060861 . - . mRNA SPAC732.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC732.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2061688 2061805 . - . mRNA SPAC3C7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3C7.01c" ; systematic_id "SPAC3C7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2061806 2063641 . - . mRNA SPAC3C7.01c ; systematic_id "SPAC3C7.01c" ; colour "7" ; gene "SPAC732.03c ||| SPAC3C7.01c" ; Alias "SPAC732.03c" ; db_xref "SPD:36/36G05" ; synonym "SPAC732.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000139; Golgi membrane
GO:0005789; endoplasmic reticulum membrane
GO:0005739; mitochondrion
GO:0004437; inositol or phosphatidylinositol phosphatase activity
GO:0006887; exocytosis
GO:0046856; phosphoinositide dephosphorylation
GO:0046488; phosphatidylinositol metabolic process" ; primary_name "SPAC732.03c" ; product "inositol polyphosphate phosphatase (predicted)" ;
chromosome1 GeneDB CDS 2061806 2063641 . - . mRNA SPAC3C7.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 2062524 2062779 . + . misc_feature unknown_1772 ; note "nominal overlap with cosmid SPAC732 and cosmid SPAC3C7" ;
chromosome1 GeneDB 5'-UTR 2063640 2063777 . - . mRNA SPAC3C7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3C7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2064853 2066004 . - . mRNA SPAC3C7.02c ; db_xref "SPD:18/18B09" ; systematic_id "SPAC3C7.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR086C and YPL004C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0032126; eisosome
GO:0005741; mitochondrial outer membrane
GO:0004860; protein kinase inhibitor activity
GO:0034605; cellular response to heat
GO:0006897; endocytosis" ; gene "SPAC3C7.02c" ; product "protein kinase inhibitor associated with endocytosis (predicted)" ;
chromosome1 GeneDB CDS 2064853 2066004 . - . mRNA SPAC3C7.02c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2066442 2066667 . - . mRNA SPAC3C7.03c ; Alias "rhp55" ; ID "SPAC3C7.03c" ; db_xref "SPD:40/40C10" ; systematic_id "SPAC3C7.03c" ; primary_name "rhp55" ; gene "rhp55 ||| SPAC3C7.03c" ; note "mRNA from AF053410" ;
chromosome1 GeneDB CDS_parts 2066668 2067764 . - . mRNA SPAC3C7.03c ; systematic_id "SPAC3C7.03c" ; colour "2" ; gene "rhp55 ||| SPAC3C7.03c" ; Alias "rhp55" ; db_xref "SPD:40/40C10" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0008094; DNA-dependent ATPase activity
GO:0033170; DNA-protein loading ATPase activity
GO:0046982; protein heterodimerization activity
GO:0000730; DNA recombinase assembly
GO:0000724; double-strand break repair via homologous recombination
GO:0006311; meiotic gene conversion
GO:0000709; meiotic joint molecule formation
GO:0007131; meiotic recombination
GO:0006997; nuclear organization and biogenesis
GO:0000725; recombinational repair
GO:0006974; response to DNA damage stimulus
GO:0042148; strand invasion
GO:0033062; Rhp55-Rhp57 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10430583; date=20100705 ||| term=phenotype, nuclear morphology defects; db_xref=PMID:10430583; date=20100705 ||| term=phenotype, DNA content increased; db_xref=PMID:10430583; date=20100705 ||| term=phenotype, sensitive to MMS; db_xref=PMID:10430583; date=20100705 ||| term=phenotype, sensitive to IR; db_xref=PMID:10430583; date=20100705 ||| term=phenotype, sensitive to UV; db_xref=PMID:10430583; date=20100705 ||| term=RecA family; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=helix-hairpin-helix; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDR076W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "rhp55" ; product "RecA family ATPase Rhp55" ;
chromosome1 GeneDB CDS 2066668 2067704 . - . mRNA SPAC3C7.03c ; colour "2" ;
chromosome1 GeneDB CDS 2067749 2067764 . - . mRNA SPAC3C7.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 2067705 2067718 . - . misc_feature unknown_1773 ; colour "6" ; note "ctaatactttttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2067705 2067748 . - . intron SPAC3C7.03c ; Alias "rhp55" ; db_xref "SPD:40/40C10" ; systematic_id "SPAC3C7.03c" ; primary_name "rhp55" ; gene "rhp55 ||| SPAC3C7.03c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2067743 2067748 . - . misc_feature unknown_1774 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2067765 2067904 . - . mRNA SPAC3C7.03c ; Alias "rhp55" ; ID "SPAC3C7.03c" ; systematic_id "SPAC3C7.03c" ; primary_name "rhp55" ; gene "rhp55 ||| SPAC3C7.03c" ; note "mRNA from AF053410" ;
chromosome1 GeneDB 5'-UTR 2068614 2068763 . + . mRNA SPAC3C7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3C7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2068764 2071115 . + . mRNA SPAC3C7.04 ; db_xref "SPD:28/28D11" ; systematic_id "SPAC3C7.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPAC1486.10 and SPCC417.09C and SPBP8B7.30C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC3C7.04" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB CDS 2068764 2071115 . + . mRNA SPAC3C7.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2071116 2071530 . + . mRNA SPAC3C7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3C7.04" ; systematic_id "SPAC3C7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2071862 2071903 . - . mRNA SPAC3C7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3C7.05c" ; systematic_id "SPAC3C7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2071904 2073232 . - . mRNA SPAC3C7.05c ; systematic_id "SPAC3C7.05c" ; colour "7" ; gene "SPAC3C7.05c ||| mug191" ; Alias "mug191" ; db_xref "SPD:20/20E10" ; GO "GO:0031362; anchored to external side of plasma membrane
GO:0008496; mannan endo-1,6-alpha-mannosidase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0051692; cellular oligosaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=20080222 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; primary_name "mug191" ; product "alpha-1,6- mannanase (predicted)" ;
chromosome1 GeneDB CDS 2071904 2073232 . - . mRNA SPAC3C7.05c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2073231 2073566 . - . mRNA SPAC3C7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3C7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2073953 2074293 . - . mRNA SPAC3C7.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3C7.06c" ; systematic_id "SPAC3C7.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2074294 2076246 . - . mRNA SPAC3C7.06c ; systematic_id "SPAC3C7.06c" ; colour "2" ; gene "pit1 ||| SPAC3C7.06c" ; Alias "pit1" ; db_xref "SPD:27/27A01" ; GO "GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL106W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pit1" ; product "serine/threonine protein kinase, meiotic Pit1" ;
chromosome1 GeneDB CDS 2074294 2076246 . - . mRNA SPAC3C7.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2076245 2076923 . - . mRNA SPAC3C7.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3C7.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2077140 2077279 . - . mRNA SPAC3C7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3C7.07c" ; systematic_id "SPAC3C7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2077280 2078730 . - . mRNA SPAC3C7.07c ; db_xref "SPD:44/44F12" ; systematic_id "SPAC3C7.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004057; arginyltransferase activity
GO:0016598; protein arginylation
GO:0006399; tRNA metabolism" ; gene "SPAC3C7.07c" ; product "arginine-tRNA protein transferase (predicted)" ; EC_number "2.3.2.8" ;
chromosome1 GeneDB CDS 2077280 2077384 . - . mRNA SPAC3C7.07c ; colour "7" ;
chromosome1 GeneDB CDS 2077424 2077684 . - . mRNA SPAC3C7.07c ; colour "7" ;
chromosome1 GeneDB CDS 2077726 2077796 . - . mRNA SPAC3C7.07c ; colour "7" ;
chromosome1 GeneDB CDS 2077843 2078366 . - . mRNA SPAC3C7.07c ; colour "7" ;
chromosome1 GeneDB CDS 2078421 2078486 . - . mRNA SPAC3C7.07c ; colour "7" ;
chromosome1 GeneDB CDS 2078528 2078550 . - . mRNA SPAC3C7.07c ; colour "7" ;
chromosome1 GeneDB CDS 2078695 2078730 . - . mRNA SPAC3C7.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 2077385 2077396 . - . misc_feature unknown_1775 ; colour "6" ; note "ctaattcttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2077418 2077423 . - . misc_feature unknown_1776 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2077685 2077697 . - . misc_feature unknown_1777 ; colour "6" ; note "ctaatacaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2077720 2077725 . - . misc_feature unknown_1778 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2078367 2078386 . - . misc_feature unknown_1779 ; colour "6" ; note "ctaaccgccgaatgttgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2078415 2078420 . - . misc_feature unknown_1780 ; colour "6" ; note "gtactt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2078487 2078501 . - . misc_feature unknown_1781 ; colour "6" ; note "ctaatataaaataag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2078522 2078527 . - . misc_feature unknown_1782 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2078551 2078569 . - . misc_feature unknown_1783 ; colour "6" ; note "ttaacctcaggactaccag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2078689 2078694 . - . misc_feature unknown_1784 ; colour "6" ; note "gtcagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2078729 2078793 . - . mRNA SPAC3C7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3C7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2079070 2079273 . - . mRNA SPAC3C7.08c ; Alias "elf1" ; ID "SPAC3C7.08c" ; db_xref "SPD:47/47H10" ; systematic_id "SPAC3C7.08c" ; primary_name "elf1" ; gene "elf1 ||| SPAC3C7.08c" ; note "mRNA from AU006509" ;
chromosome1 GeneDB CDS_parts 2079274 2082447 . - . mRNA SPAC3C7.08c ; systematic_id "SPAC3C7.08c" ; colour "2" ; gene "elf1 ||| SPAC3C7.08c" ; Alias "elf1" ; db_xref "SPD:47/47H10" ; GO "GO:0016887; ATPase activity
GO:0006406; mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0042274; ribosome small subunit biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12110682; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=chromodomain protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL226W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "elf1" ; product "AAA family ATPase Elf1" ;
chromosome1 GeneDB CDS 2079274 2082447 . - . mRNA SPAC3C7.08c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2082446 2082476 . - . mRNA SPAC3C7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3C7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2083358 2083518 . + . mRNA SPAC3C7.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3C7.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2083519 2084808 . + . mRNA SPAC3C7.09 ; systematic_id "SPAC3C7.09" ; colour "7" ; gene "set8 ||| SPAC3C7.09" ; Alias "set8" ; db_xref "SPD:22/22D01" ; GO "GO:0016279; protein-lysine N-methyltransferase activity
GO:0006479; protein amino acid methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YHL039W and YPL208W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "set8" ; product "lysine methyltransferase Set8 (predicted)" ;
chromosome1 GeneDB CDS 2083519 2084808 . + . mRNA SPAC3C7.09 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2085115 2085247 . + . mRNA SPAC3C7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3C7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2085248 2086114 . + . mRNA SPAC3C7.10 ; systematic_id "SPAC3C7.10" ; colour "7" ; gene "pex13 ||| SPAC3C7.10" ; Alias "pex13" ; db_xref "SPD:11/11F07" ; GO "GO:0005778; peroxisomal membrane
GO:0006625; protein targeting to peroxisome
GO:0016558; protein import into peroxisome matrix" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR191W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=disease associated, peroxisomal defects; date=20070627 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pex13" ; product "peroxin 13 (predicted)" ;
chromosome1 GeneDB CDS 2085248 2086114 . + . mRNA SPAC3C7.10 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2086393 2086614 . - . mRNA SPAC3C7.11c ; Alias "cnx1" ; ID "SPAC3C7.11c" ; db_xref "SPD:35/35B11" ; systematic_id "SPAC3C7.11c" ; primary_name "cnx1" ; gene "cnx1 ||| SPAC3C7.11c" ; note "mRNA from AU008198" ;
chromosome1 GeneDB CDS_parts 2086615 2088297 . - . mRNA SPAC3C7.11c ; systematic_id "SPAC3C7.11c" ; colour "2" ; gene "cnx1 ||| SPAC3C7.11c" ; Alias "cnx1" ; db_xref "SPD:35/35B11" ; synonym "cal1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, cells can become independent of the essential calnexin; db_xref=PMID:14963023; date=20060420 ||| term=misc, essential function does not appear to reside in its role in the folding or retention of misfolded proteins; db_xref=PMID:14984369; cv=misc; date=20060420 ||| term=modification, glycosylated; cv=pt_mod; db_xref=PMID:7876257; date=20060420 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7876257; date=20060420 ||| term=misc functional group, chaperone; date=19700101 ||| term=orthologous to S. cerevisiae YAL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, inherited protein folding defects; date=20090428 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005509; calcium ion binding
GO:0005515; protein binding
GO:0030433; ER-associated protein catabolic process
GO:0034975; protein folding in the endoplasmic reticulum
GO:0034605; cellular response to heat
GO:0006915; apoptosis
GO:0006515; misfolded or incompletely synthesized protein catabolic process" ; primary_name "cnx1" ; product "calnexin Cnx1" ;
chromosome1 GeneDB CDS 2086615 2088297 . - . mRNA SPAC3C7.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2088296 2088305 . - . mRNA SPAC3C7.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3C7.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2089304 2089786 . + . mRNA SPAC3C7.12 ; Alias "tip1" ; ID "SPAC3C7.12" ; db_xref "EMBL:U59915" ; systematic_id "SPAC3C7.12" ; primary_name "tip1" ; gene "tip1 ||| noc1 ||| SPAC3C7.12" ;
chromosome1 GeneDB CDS_parts 2089787 2091172 . + . mRNA SPAC3C7.12 ; systematic_id "SPAC3C7.12" ; colour "2" ; gene "tip1 ||| noc1 ||| SPAC3C7.12" ; Alias "tip1" ; db_xref "SPD:44/44D06" ; synonym "noc1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, plus end tracking protein; cv=m_f_g; date=20060411 ||| term=orthologous to S. cerevisiae YCL029C; date=19700101 ||| term=gene expression, expression induced by heat shock; db_xref=PMID:9714741; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, filament morphology aberrant; qualifier=deletion; db_xref=PMID:19542312; date=20090706" ; GO "GO:0051285; cell cortex of cell tip
GO:0015630; microtubule cytoskleton
GO:0051010; microtubule plus-end binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0030010; establishment of cell polarity (sensu Fungi)
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0046785; microtubule polymerization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030437; sporulation (sensu Fungi)
GO:0010570; regulation of filamentous growth
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "tip1" ; product "CLIP170 family protein Tip1" ;
chromosome1 GeneDB CDS 2089787 2091172 . + . mRNA SPAC3C7.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2091173 2091278 . + . mRNA SPAC3C7.12 ; Alias "tip1" ; ID "SPAC3C7.12" ; db_xref "EMBL:U59915 ||| SPD:44/44D06" ; systematic_id "SPAC3C7.12" ; primary_name "tip1" ; gene "tip1 ||| noc1 ||| SPAC3C7.12" ;
chromosome1 GeneDB CDS_parts 2091521 2092942 . - . mRNA SPAC3C7.13c ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00480; ||| SPD:44/44E11" ; systematic_id "SPAC3C7.13c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, chronic non- spherocytic hemolytic anemia; date=20061122 ||| term=orthologous to S. cerevisiae YNL241C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009051; pentose-phosphate shunt, oxidative branch
GO:0051156; glucose 6-phosphate metabolic process
GO:0004345; glucose-6-phosphate 1-dehydrogenase activity
GO:0005737; cytoplasm" ; gene "SPAC3C7.13c" ; product "glucose-6-phosphate 1-dehydrogenase (predicted)" ; EC_number "1.1.1.49" ;
chromosome1 GeneDB CDS 2091521 2092942 . - . mRNA SPAC3C7.13c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2094110 2094282 . - . mRNA SPAC3C7.14c ; Alias "obr1" ; ID "SPAC3C7.14c" ; db_xref "SPD:06/06G10" ; systematic_id "SPAC3C7.14c" ; primary_name "obr1" ; gene "obr1 ||| uhp1 ||| apt1 ||| SPAC3C7.14c" ; note "mRNA from AU013494" ;
chromosome1 GeneDB CDS_parts 2094283 2094891 . - . mRNA SPAC3C7.14c ; systematic_id "SPAC3C7.14c" ; colour "2" ; gene "obr1 ||| uhp1 ||| apt1 ||| SPAC3C7.14c" ; Alias "obr1" ; db_xref "SPD:06/06G10" ; synonym "apt1 ||| uhp1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, ubiquitinated; cv=pt_mod; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7769002; date=19700101 ||| term=orthologous to S. cerevisiae YBR052C and YCR004C and YDR032C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, gene name conflict; cv=warning; date=20100126 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0030466; chromatin silencing at silent mating- type cassette
GO:0005515; protein binding
GO:0042393; histone binding
GO:0071238; cellular response to brefeldin A
GO:0071238; cellular response to brefeldin A
GO:0005634; nucleus" ; primary_name "obr1" ; product "ubiquitinated histone-like protein Uhp1" ;
chromosome1 GeneDB CDS 2094283 2094891 . - . mRNA SPAC3C7.14c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2094890 2094963 . - . mRNA SPAC3C7.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3C7.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2096336 2096381 . - . mRNA SPAC25A8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25A8.03c" ; systematic_id "SPAC25A8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2096382 2097785 . - . mRNA SPAC25A8.03c ; systematic_id "SPAC25A8.03c" ; colour "10" ; gene "SPAC3C7.15c ||| SPAC25A8.03c" ; Alias "SPAC3C7.15c" ; db_xref "SPD:01/01A11" ; synonym "SPAC3C7.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL162C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MIDA ortholog; date=20100728" ; GO "GO:0005739; mitochondrion" ; primary_name "SPAC3C7.15c" ; product "DUF185 protein, mitochondrial" ;
chromosome1 GeneDB CDS 2096382 2097785 . - . mRNA SPAC25A8.03c ; colour "10" ;
chromosome1 GeneDB misc_feature 2097574 2097575 . + . misc_feature unknown_1785 ; note "nominal overlap with cosmid SPAC25A8 and cosmid SPAC3C7" ;
chromosome1 GeneDB 5'-UTR 2097784 2097985 . - . mRNA SPAC25A8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25A8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2098262 2098280 . - . mRNA SPAC25A8.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25A8.01c" ; systematic_id "SPAC25A8.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2098281 2101049 . - . mRNA SPAC25A8.01c ; systematic_id "SPAC25A8.01c" ; colour "2" ; gene "fft3 ||| SPAC25A8.01c" ; Alias "fft3" ; db_xref "SPD:47/47C01" ; synonym "snf2SR" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CUE domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YAL019W; date=19700101 ||| term=phenotype, sensitive to high temperature; cv=phenotype; db_xref=PMID:18422602; date=20080718 ||| term=phenotype, sensitive to cold; cv=phenotype; db_xref=PMID:18422602; date=20080718 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016585; chromatin remodeling complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0003677; DNA binding
GO:0006338; chromatin remodeling
GO:0032017; positive regulation of Ran protein signal transduction
GO:0032017; positive regulation of Ran protein signal transduction
GO:0005634; nucleus
GO:0000790; nuclear chromatin
GO:0005515; protein binding
GO:0008094; DNA-dependent ATPase activity" ; primary_name "fft3" ; product "fun thirty related protein Fft3" ;
chromosome1 GeneDB CDS 2098281 2101049 . - . mRNA SPAC25A8.01c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2101048 2101780 . - . mRNA SPAC25A8.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25A8.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2102331 2102781 . + . mRNA SPAC25A8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25A8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2102782 2103954 . + . mRNA SPAC25A8.02 ; db_xref "SPD:18/18E11" ; systematic_id "SPAC25A8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC25A8.02" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2102782 2103954 . + . mRNA SPAC25A8.02 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 2103955 2103980 . + . mRNA SPAC25A8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25A8.02" ; systematic_id "SPAC25A8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2104108 2104211 . + . misc_feature unknown_1786 ; note "nominal overlap with cosmid SPAC631 and cosmid SPAC25A8" ;
chromosome1 GeneDB 3'-UTR 2104148 2104196 . - . mRNA SPAC631.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC631.01c" ; systematic_id "SPAC631.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2104197 2105249 . - . mRNA SPAC631.01c ; systematic_id "SPAC631.01c" ; colour "2" ; gene "acp2 ||| SPAC631.01c" ; Alias "acp2" ; db_xref "SPD:32/32D06" ; GO "GO:0008290; F-actin capping protein complex
GO:0051016; barbed-end actin filament capping
GO:0051015; actin filament binding
GO:0000916; cytokinesis, contractile ring contraction
GO:0034613; cellular protein localization
GO:0030479; actin cortical patch
GO:0005884; actin filament
GO:0051286; cell tip
GO:0033205; cell cycle cytokinesis
GO:0000916; cytokinesis, contractile ring contraction
GO:0030835; negative regulation of actin filament depolymerization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "acp2" ; product "F-actin capping protein beta subunit (predicted)" ;
chromosome1 GeneDB CDS 2104197 2104600 . - . mRNA SPAC631.01c ; colour "2" ;
chromosome1 GeneDB CDS 2104650 2105046 . - . mRNA SPAC631.01c ; colour "2" ;
chromosome1 GeneDB CDS 2105244 2105249 . - . mRNA SPAC631.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 2104601 2104614 . - . misc_feature unknown_1787 ; colour "6" ; note "ctaacttcatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2104644 2104649 . - . misc_feature unknown_1788 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2105047 2105063 . - . misc_feature unknown_1789 ; colour "6" ; note "ctaacttattcttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2105238 2105243 . - . misc_feature unknown_1790 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2105248 2105410 . - . mRNA SPAC631.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC631.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2105516 2107469 . + . mRNA SPAC631.02 ; ID "SPAC631.02" ; db_xref "PMID:18488015" ; systematic_id "SPAC631.02" ; gene "SPAC631.02" ; note "From Solexa transcript SPNG385-87 ||| The coordinates of this feature are not exact" ;
chromosome1 GeneDB CDS_parts 2107470 2110123 . + . mRNA SPAC631.02 ; db_xref "SPD:39/39F08" ; systematic_id "SPAC631.02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=orthologous to S. cerevisiae YLR399C and YDL070W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human BRD3 and BRD4 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; GO "GO:0006338; chromatin remodeling
GO:0005634; nucleus
GO:0000790; nuclear chromatin" ; gene "SPAC631.02" ; product "bromodomain protein (predicted)" ;
chromosome1 GeneDB CDS 2107470 2107515 . + . mRNA SPAC631.02 ; colour "7" ;
chromosome1 GeneDB CDS 2107860 2110123 . + . mRNA SPAC631.02 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2111403 2111432 . + . mRNA SPAC20H4.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20H4.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2111433 2113433 . + . mRNA SPAC20H4.01 ; systematic_id "SPAC20H4.01" ; colour "7" ; db_xref "SPD:49/49D02" ; Alias "utp5" ; synonym "SPAC631.03" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA
GO:0007126; ascospore formation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR398W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; primary_name "utp5" ; product "U3 snoRNP-associated protein Utp5 (predicted)" ;
chromosome1 GeneDB CDS 2111433 2113433 . + . mRNA SPAC20H4.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 2112650 2112768 . + . misc_feature unknown_1791 ; note "nominal overlap with cosmid c631" ;
chromosome1 GeneDB 3'-UTR 2113434 2113715 . + . mRNA SPAC20H4.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20H4.01" ; systematic_id "SPAC20H4.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2113993 2114010 . + . mRNA SPAC20H4.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20H4.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2114011 2114763 . + . mRNA SPAC20H4.02 ; systematic_id "SPAC20H4.02" ; colour "10" ; gene "SPAC20H4.02" ; db_xref "SPD:41/41F01" ; Alias "dsc3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR223W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "dsc3" ; product "conserved fungal protein" ; reserved_name "dsc3" ;
chromosome1 GeneDB CDS 2114011 2114763 . + . mRNA SPAC20H4.02 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 2114764 2114872 . + . mRNA SPAC20H4.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20H4.02" ; systematic_id "SPAC20H4.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2114982 2115155 . - . mRNA SPAC20H4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20H4.03c" ; systematic_id "SPAC20H4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2115156 2116381 . - . mRNA SPAC20H4.03c ; systematic_id "SPAC20H4.03c" ; colour "2" ; gene "tfs1 ||| SPAC20H4.03c" ; Alias "tfs1" ; db_xref "SPD:50/50E02" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0008159; positive transcription elongation factor activity
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006379; mRNA cleavage
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2C2 type; date=19700101 ||| term=orthologous to S. cerevisiae YGL043W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8904334; date=20070720 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100203 ||| term=human TCEA1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "tfs1" ; product "transcription elongation factor TFIIS" ;
chromosome1 GeneDB CDS 2115156 2115200 . - . mRNA SPAC20H4.03c ; colour "2" ;
chromosome1 GeneDB CDS 2115250 2115274 . - . mRNA SPAC20H4.03c ; colour "2" ;
chromosome1 GeneDB CDS 2115338 2116017 . - . mRNA SPAC20H4.03c ; colour "2" ;
chromosome1 GeneDB CDS 2116193 2116255 . - . mRNA SPAC20H4.03c ; colour "2" ;
chromosome1 GeneDB CDS 2116313 2116381 . - . mRNA SPAC20H4.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 2115201 2115215 . - . misc_feature unknown_1792 ; colour "6" ; note "ctaatttttttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2115244 2115249 . - . misc_feature unknown_1793 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2115275 2115290 . - . misc_feature unknown_1794 ; colour "6" ; note "ttaacaatccgtatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2115332 2115337 . - . misc_feature unknown_1795 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2116018 2116034 . - . misc_feature unknown_1796 ; colour "6" ; note "ctaaccaatgatgctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2116018 2116192 . - . intron SPAC20H4.03c ; Alias "tfs1" ; db_xref "SPD:50/50E02" ; systematic_id "SPAC20H4.03c" ; primary_name "tfs1" ; gene "tfs1 ||| SPAC20H4.03c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2116187 2116192 . - . misc_feature unknown_1797 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2116256 2116270 . - . misc_feature unknown_1798 ; colour "6" ; note "ctaatatcaagctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2116256 2116312 . - . intron SPAC20H4.03c ; Alias "tfs1" ; db_xref "SPD:50/50E02" ; systematic_id "SPAC20H4.03c" ; primary_name "tfs1" ; gene "tfs1 ||| SPAC20H4.03c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2116307 2116312 . - . misc_feature unknown_1799 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2116382 2116435 . - . mRNA SPAC20H4.03c ; Alias "tfs1" ; ID "SPAC20H4.03c" ; systematic_id "SPAC20H4.03c" ; primary_name "tfs1" ; gene "tfs1 ||| SPAC20H4.03c" ; note "mRNA from AU013276" ;
chromosome1 GeneDB 5'-UTR 2116520 2116868 . + . mRNA SPAC20H4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20H4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2116869 2119220 . + . mRNA SPAC20H4.04 ; systematic_id "SPAC20H4.04" ; colour "7" ; gene "SPAC20H4.04 ||| mfh2" ; Alias "fml2" ; db_xref "SPD:49/49E05" ; synonym "mfh2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YIR002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0043138; 3' to 5' DNA helicase activity
GO:0006281; DNA repair
GO:0005634; nucleus
GO:0043140; ATP-dependent 3' to 5' DNA helicase activity
GO:0033567; DNA replication, Okazaki fragment processing" ; primary_name "fml2" ; product "ATP-dependent 3' to 5' DNA helicase (predicted)" ;
chromosome1 GeneDB CDS 2116869 2119220 . + . mRNA SPAC20H4.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2119221 2119933 . + . mRNA SPAC20H4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20H4.04" ; systematic_id "SPAC20H4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2119327 2119361 . - . mRNA SPAC20H4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20H4.05c" ; systematic_id "SPAC20H4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2119362 2120284 . - . mRNA SPAC20H4.05c ; db_xref "SPD:41/41G10" ; systematic_id "SPAC20H4.05c" ; GO "GO:0005737; cytoplasm
GO:0046570; methylthioribulose-1-phosphate dehydratase activity
GO:0019509; L-methionine salvage from methylthioadenosine" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; gene "SPAC20H4.05c" ; product "5'-methylthioribulose-1-phosphate dehydratase, adducin (predicted)" ;
chromosome1 GeneDB CDS 2119362 2119570 . - . mRNA SPAC20H4.05c ; colour "7" ;
chromosome1 GeneDB CDS 2119614 2119792 . - . mRNA SPAC20H4.05c ; colour "7" ;
chromosome1 GeneDB CDS 2119838 2119915 . - . mRNA SPAC20H4.05c ; colour "7" ;
chromosome1 GeneDB CDS 2119975 2120052 . - . mRNA SPAC20H4.05c ; colour "7" ;
chromosome1 GeneDB CDS 2120163 2120284 . - . mRNA SPAC20H4.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 2119571 2119582 . - . misc_feature unknown_1800 ; colour "6" ; note "ctaaccgaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2119608 2119613 . - . misc_feature unknown_1801 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2119832 2119837 . - . misc_feature unknown_1802 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2119916 2119929 . - . misc_feature unknown_1803 ; colour "6" ; note "ctaacctcttgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2119969 2119974 . - . misc_feature unknown_1804 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2120053 2120067 . - . misc_feature unknown_1805 ; colour "6" ; note "ttaactttcatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2120157 2120162 . - . misc_feature unknown_1806 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2120283 2120316 . - . mRNA SPAC20H4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20H4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2120604 2122208 . - . mRNA SPAC20H4.06c ; db_xref "SPD:49/49A06" ; systematic_id "SPAC20H4.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC20H4.06c" ; product "RNA-binding protein" ;
chromosome1 GeneDB CDS 2120604 2122208 . - . mRNA SPAC20H4.06c ; colour "10" ;
chromosome1 GeneDB intron 2120881 2120930 . - . intron SPAC20H4.06c ; db_xref "SPD:49/49A06" ; systematic_id "SPAC20H4.06c" ; gene "SPAC20H4.06c" ;
chromosome1 GeneDB 5'-UTR 2122207 2122406 . - . mRNA SPAC20H4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20H4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2123066 2123289 . + . mRNA SPAC20H4.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20H4.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2123290 2124449 . + . mRNA SPAC20H4.07 ; systematic_id "SPAC20H4.07" ; colour "2" ; gene "rhp57 ||| SPAC20H4.07" ; Alias "rhp57" ; db_xref "SPD:50/50D04" ; obsolete_name "SPAC145.01" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:11560889; date=20100730 ||| term=phenotype, nuclear morphology defects; db_xref=PMID:11560889; date=20100730 ||| term=phenotype, DNA recombination defects, gene conversion, reduced; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, long tract gene conversion, increased; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, crossover, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=RecA family; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=helix-hairpin-helix; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, Rhp57 facilitates Rhp51 assembly at damage sites independently of Swi5; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant produced each recombination class (gene conversion, crossover and long tract gene conversion) at frequencies similar to that of the rhp51delta single mutant; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=misc, increased frequency of long tract gene conversion in the rhp57 delta single mutant was suppressed in the swi5delta rhp57delta double mutant, to a level similar to that observed in the rhp51 mutant; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant showed a repair profile very similar to that to the rhp51delta single mutant; db_xref=PMID:17304215; cv=misc; date=20090210" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0033170; DNA-protein loading ATPase activity
GO:0046982; protein heterodimerization activity
GO:0000724; double-strand break repair via homologous recombination
GO:0007131; meiotic recombination
GO:0042148; strand invasion
GO:0033062; Rhp55-Rhp57 complex
GO:0000730; DNA recombinase assembly" ; primary_name "rhp57" ; product "RecA family ATPase Rhp57" ;
chromosome1 GeneDB CDS 2123290 2123356 . + . mRNA SPAC20H4.07 ; colour "2" ;
chromosome1 GeneDB CDS 2123452 2124449 . + . mRNA SPAC20H4.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 2123357 2123362 . + . misc_feature unknown_1807 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2123439 2123451 . + . misc_feature unknown_1808 ; colour "6" ; note "ctgacagctttag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 2124938 2124991 . + . mRNA SPAC20H4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20H4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2124992 2125804 . + . mRNA SPAC20H4.08 ; systematic_id "SPAC20H4.08" ; colour "7" ; gene "SPAC20H4.08" ; obsolete_name "SPAC145.02" ; db_xref "SPD:10/10D06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR043W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0019211; phosphatase activator activity
GO:0033554; cellular response to stress
GO:0007165; signal transduction
GO:0009966; regulation of signal transduction" ; product "phosphatase activator (predicted)" ;
chromosome1 GeneDB CDS 2124992 2125804 . + . mRNA SPAC20H4.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2125805 2125927 . + . mRNA SPAC20H4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20H4.08" ; systematic_id "SPAC20H4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2126067 2128359 . + . mRNA SPAC20H4.09 ; systematic_id "SPAC20H4.09" ; colour "7" ; gene "SPAC20H4.09" ; obsolete_name "SPAC145.03" ; db_xref "SPD:38/38B07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding" ; product "ATP-dependent RNA helicase, spliceosomal (predicted)" ;
chromosome1 GeneDB CDS 2126067 2126157 . + . mRNA SPAC20H4.09 ; colour "7" ;
chromosome1 GeneDB CDS 2126201 2126278 . + . mRNA SPAC20H4.09 ; colour "7" ;
chromosome1 GeneDB CDS 2126327 2126391 . + . mRNA SPAC20H4.09 ; colour "7" ;
chromosome1 GeneDB CDS 2126440 2126696 . + . mRNA SPAC20H4.09 ; colour "7" ;
chromosome1 GeneDB CDS 2126733 2127504 . + . mRNA SPAC20H4.09 ; colour "7" ;
chromosome1 GeneDB CDS 2127551 2127652 . + . mRNA SPAC20H4.09 ; colour "7" ;
chromosome1 GeneDB CDS 2127701 2127869 . + . mRNA SPAC20H4.09 ; colour "7" ;
chromosome1 GeneDB CDS 2127912 2128232 . + . mRNA SPAC20H4.09 ; colour "7" ;
chromosome1 GeneDB CDS 2128271 2128359 . + . mRNA SPAC20H4.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 2126158 2126163 . + . misc_feature unknown_1809 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2126185 2126200 . + . misc_feature unknown_1810 ; colour "6" ; note "ctgacgttacatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2126279 2126284 . + . misc_feature unknown_1811 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2126309 2126326 . + . misc_feature unknown_1812 ; colour "6" ; note "ctaaaaataatcttgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2126392 2126397 . + . misc_feature unknown_1813 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2126424 2126439 . + . misc_feature unknown_1814 ; colour "6" ; note "ctaacttatttgaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2126697 2126702 . + . misc_feature unknown_1815 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB intron 2126697 2126732 . + . intron SPAC20H4.09 ; db_xref "SPD:38/38B07" ; systematic_id "SPAC20H4.09" ; gene "SPAC20H4.09" ; note "confirmed by homology; missed from initial prediction; added 23.10.2000" ;
chromosome1 GeneDB misc_feature 2126720 2126732 . + . misc_feature unknown_1816 ; colour "6" ; note "ctgacaaatcaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2127505 2127510 . + . misc_feature unknown_1817 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2127536 2127550 . + . misc_feature unknown_1818 ; colour "6" ; note "ctaatttttttgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2127653 2127658 . + . misc_feature unknown_1819 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2127686 2127700 . + . misc_feature unknown_1820 ; colour "6" ; note "ctaacccatcattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2127870 2127875 . + . misc_feature unknown_1821 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2127901 2127911 . + . misc_feature unknown_1822 ; colour "6" ; note "ttaacatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2128233 2128238 . + . misc_feature unknown_1823 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2128259 2128270 . + . misc_feature unknown_1824 ; colour "6" ; note "ttaacgttttag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 2128463 2131623 . + . mRNA SPAC20H4.10 ; systematic_id "SPAC20H4.10" ; colour "7" ; gene "ufd2 ||| SPAC20H4.10" ; note "possibly overpredicted at the N-terminal exon" ; Alias "ufd2" ; db_xref "SPD:49/49F10" ; obsolete_name "SPAC145.04" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=U-box domain; date=19700101 ||| term=orthologous to S. cerevisiae YDL190C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, ubiquitin fusion degradation protein; cv=name_description; date=20091118" ; primary_name "ufd2" ; product "ubiquitin-protein ligase E4 (predicted)" ;
chromosome1 GeneDB CDS 2128463 2128480 . + . mRNA SPAC20H4.10 ; colour "7" ;
chromosome1 GeneDB CDS 2128523 2129266 . + . mRNA SPAC20H4.10 ; colour "7" ;
chromosome1 GeneDB CDS 2129313 2131509 . + . mRNA SPAC20H4.10 ; colour "7" ;
chromosome1 GeneDB CDS 2131550 2131623 . + . mRNA SPAC20H4.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 2128481 2128486 . + . misc_feature unknown_1825 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2128506 2128522 . + . misc_feature unknown_1826 ; colour "6" ; note "ctaatattggcccatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2129267 2129272 . + . misc_feature unknown_1827 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB intron 2129267 2129312 . + . intron SPAC20H4.10 ; Alias "ufd2" ; db_xref "SPD:49/49F10" ; systematic_id "SPAC20H4.10" ; primary_name "ufd2" ; gene "ufd2 ||| SPAC20H4.10" ; note "confirmed by mRNA AF059906" ;
chromosome1 GeneDB misc_feature 2129300 2129312 . + . misc_feature unknown_1828 ; colour "6" ; note "ctgatatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2131510 2131515 . + . misc_feature unknown_1829 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2131510 2131549 . + . intron SPAC20H4.10 ; Alias "ufd2" ; db_xref "SPD:49/49F10" ; systematic_id "SPAC20H4.10" ; primary_name "ufd2" ; gene "ufd2 ||| SPAC20H4.10" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2131538 2131549 . + . misc_feature unknown_1830 ; colour "6" ; note "ctaattctttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2131624 2131713 . + . mRNA SPAC20H4.10 ; Alias "ufd2" ; ID "SPAC20H4.10" ; db_xref "SPD:49/49F10" ; systematic_id "SPAC20H4.10" ; primary_name "ufd2" ; gene "ufd2 ||| SPAC20H4.10" ; note "mRNA from AF059906" ;
chromosome1 GeneDB CDS_parts 2131895 2132615 . - . mRNA SPAC20H4.11c ; systematic_id "SPAC20H4.11c" ; colour "2" ; gene "rho5 ||| SPAC20H4.11c" ; Alias "rho5" ; db_xref "SPD:41/41E07" ; GO "GO:0032153; cell division site
GO:0051286; cell tip
GO:0031520; plasma membrane of cell tip
GO:0005886; plasma membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0030100; regulation of endocytosis
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Rho family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16146630; date=19700101 ||| term=orthologous to S. cerevisiae YPR165W; date=19700101 ||| term=modification, prenylated; cv=pt_mod; qualifier=predicted; db_xref=PMID:16146630; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; qualifier=predicted; db_xref=PMID:16146630; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rho5" ; product "Rho family GTPase Rho5" ;
chromosome1 GeneDB CDS 2131895 2132426 . - . mRNA SPAC20H4.11c ; colour "2" ;
chromosome1 GeneDB CDS 2132545 2132615 . - . mRNA SPAC20H4.11c ; colour "2" ;
chromosome1 GeneDB misc_feature 2132427 2132442 . - . misc_feature unknown_1831 ; colour "6" ; note "ctaacaattattttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2132427 2132544 . - . intron SPAC20H4.11c ; Alias "rho5" ; db_xref "SPD:41/41E07" ; systematic_id "SPAC20H4.11c" ; primary_name "rho5" ; gene "rho5 ||| SPAC20H4.11c" ; note "confirmed by mRNA SPRHO1A" ;
chromosome1 GeneDB misc_feature 2132539 2132544 . - . misc_feature unknown_1832 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2133223 2133323 . + . misc_feature unknown_1833 ; note "nominal overlap with cosmid c23C11" ;
chromosome1 GeneDB 5'-UTR 2133242 2133438 . + . mRNA SPAC23C11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2133439 2135021 . + . mRNA SPAC23C11.01 ; db_xref "SPD:25/25E01" ; systematic_id "SPAC23C11.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL090W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane" ; gene "SPAC23C11.01" ; product "ER membrane protein, ICE2 family" ;
chromosome1 GeneDB CDS 2133439 2133702 . + . mRNA SPAC23C11.01 ; colour "10" ;
chromosome1 GeneDB CDS 2133782 2134096 . + . mRNA SPAC23C11.01 ; colour "10" ;
chromosome1 GeneDB CDS 2134150 2134335 . + . mRNA SPAC23C11.01 ; colour "10" ;
chromosome1 GeneDB CDS 2134376 2134488 . + . mRNA SPAC23C11.01 ; colour "10" ;
chromosome1 GeneDB CDS 2134574 2135021 . + . mRNA SPAC23C11.01 ; colour "10" ;
chromosome1 GeneDB misc_feature 2133703 2133708 . + . misc_feature unknown_1834 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2133762 2133781 . + . misc_feature unknown_1835 ; colour "6" ; note "ctaacataaatttaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2134097 2134102 . + . misc_feature unknown_1836 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2134135 2134149 . + . misc_feature unknown_1837 ; colour "6" ; note "ttaacttaaacgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2134336 2134341 . + . misc_feature unknown_1838 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2134363 2134375 . + . misc_feature unknown_1839 ; colour "6" ; note "ttaacatatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2134489 2134494 . + . misc_feature unknown_1840 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2134557 2134573 . + . misc_feature unknown_1841 ; colour "6" ; note "ttaacattttttaacag, splice branch and acceptor" ;
chromosome1 GeneDB polyA_site 2135325 2135325 . - . mRNA SPAC23C11.02c ; temporary_systematic_id "SPAC23C11.02c" ; colour "4" ; note "poly A attachment site" ;
chromosome1 GeneDB CDS_parts 2135357 2135788 . - . mRNA SPAC23C11.02c ; systematic_id "SPAC23C11.02c" ; colour "7" ; gene "rps23 ||| SPAC23C11.02c" ; Alias "rps23" ; db_xref "SPD:03/03E10" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR118W and YPR132W; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps23" ; product "40S ribosomal protein S23 (predicted)" ;
chromosome1 GeneDB CDS 2135357 2135788 . - . mRNA SPAC23C11.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2135787 2135826 . - . mRNA SPAC23C11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 2135855 2135862 . - . promoter unknown_1842 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB promoter 2135864 2135873 . - . promoter unknown_1843 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB 5'-UTR 2135951 2136144 . + . mRNA SPAC23C11.03 ; ID "SPAC23C11.03" ; systematic_id "SPAC23C11.03" ; gene "SPAC23C11.03" ; note "mRNA from spc01712" ;
chromosome1 GeneDB CDS_parts 2136145 2137941 . + . mRNA SPAC23C11.03 ; db_xref "SPD:36/36D05" ; systematic_id "SPAC23C11.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030532; small nuclear ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0006364; 35S primary transcript processing" ; gene "SPAC23C11.03" ; product "U3 snoRNP-associated protein Mpp1 (predicted)" ;
chromosome1 GeneDB CDS 2136145 2137941 . + . mRNA SPAC23C11.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2137942 2138028 . + . mRNA SPAC23C11.03 ; ID "SPAC23C11.03" ; db_xref "SPD:36/36D05" ; systematic_id "SPAC23C11.03" ; gene "SPAC23C11.03" ; note "mRNA from AU007774" ;
chromosome1 GeneDB CDS_parts 2138064 2139438 . - . mRNA SPAC23C11.04c ; systematic_id "SPAC23C11.04c" ; colour "2" ; gene "pnk1 ||| SPAC23C11.04c" ; Alias "pnk1" ; db_xref "SPD:21/21C11" ; GO "GO:0005634; nucleus
GO:0046404; ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0000718; nucleotide-excision repair, DNA damage removal
GO:0046403; polynucleotide 3'-phosphatase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR156C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pnk1" ; product "DNA kinase/phosphatase Pnk1" ; EC_number "3.1.3.32 ||| 2.7.1.78" ;
chromosome1 GeneDB CDS 2138064 2138210 . - . mRNA SPAC23C11.04c ; colour "2" ;
chromosome1 GeneDB CDS 2138267 2138844 . - . mRNA SPAC23C11.04c ; colour "2" ;
chromosome1 GeneDB CDS 2138898 2139438 . - . mRNA SPAC23C11.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 2138211 2138224 . - . misc_feature unknown_1844 ; colour "6" ; note "ctaaccaattctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2138261 2138266 . - . misc_feature unknown_1845 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2138845 2138865 . - . misc_feature unknown_1846 ; colour "6" ; note "ttaacatttttcaccctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2138892 2138897 . - . misc_feature unknown_1847 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2140379 2140528 . + . mRNA SPAC23C11.05 ; ID "SPAC23C11.05" ; systematic_id "SPAC23C11.05" ; gene "SPAC23C11.05" ; note "mRNA from SPPPAG X54301" ;
chromosome1 GeneDB promoter 2140420 2140425 . + . promoter unknown_1848 ; colour "4" ; note "TATA box (predicted)" ;
chromosome1 GeneDB CDS_parts 2140529 2141398 . + . mRNA SPAC23C11.05 ; systematic_id "SPAC23C11.05" ; colour "10" ; gene "SPAC23C11.05" ; db_xref "SPD:11/11G01" ; obsolete_name "ppa ||| ppa1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR011C and YMR267W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0004427; inorganic diphosphatase activity
GO:0005829; cytosol
GO:0005737; cytoplasm" ; product "inorganic pyrophosphatase (predicted)" ; EC_number "3.6.1.1" ;
chromosome1 GeneDB CDS 2140529 2141398 . + . mRNA SPAC23C11.05 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 2141399 2141698 . + . mRNA SPAC23C11.05 ; ID "SPAC23C11.05" ; db_xref "SPD:11/11G01" ; systematic_id "SPAC23C11.05" ; gene "SPAC23C11.05" ; note "mRNA from SPPPAG X54301" ;
chromosome1 GeneDB CDS_parts 2141684 2143291 . - . mRNA SPAC23C11.06c ; db_xref "SPD:25/25G08" ; systematic_id "SPAC23C11.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL115C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC23C11.06c" ; product "hydrolase (inferred from context)" ;
chromosome1 GeneDB CDS 2141684 2143291 . - . mRNA SPAC23C11.06c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2143292 2143598 . - . mRNA SPAC23C11.06c ; ID "SPAC23C11.06c" ; systematic_id "SPAC23C11.06c" ; gene "SPAC23C11.06c" ; note "mRNA from spc01094" ;
chromosome1 GeneDB CDS_parts 2144894 2145226 . + . mRNA SPAC23C11.07 ; db_xref "SPD:01/01H07" ; systematic_id "SPAC23C11.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC23C11.07" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2144894 2145226 . + . mRNA SPAC23C11.07 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 2145272 2145680 . + . mRNA SPAC23C11.08 ; Alias "php3" ; ID "SPAC23C11.08" ; db_xref "EMBL:X75072" ; systematic_id "SPAC23C11.08" ; gene "php3 ||| SPAC23C11.08" ; primary_name "php3" ;
chromosome1 GeneDB CDS_parts 2145681 2146388 . + . mRNA SPAC23C11.08 ; systematic_id "SPAC23C11.08" ; colour "2" ; gene "php3 ||| SPAC23C11.08" ; Alias "php3" ; db_xref "SPD:08/08D01" ; GO "GO:0031670; cellular response to nutrient
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016602; CCAAT-binding factor complex
GO:0005634; nucleus
GO:0006109; regulation of carbohydrate metabolism
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBL021C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DNA binding specificity, complex binds 5'-CCAAT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates pcl1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates sdh41; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates isa1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates fbp1; db_xref=PMID:11238405; date=20100302" ; primary_name "php3" ; product "CCAAT-binding factor complex subunit Php3" ;
chromosome1 GeneDB CDS 2145681 2145779 . + . mRNA SPAC23C11.08 ; colour "2" ;
chromosome1 GeneDB CDS 2145927 2145987 . + . mRNA SPAC23C11.08 ; colour "2" ;
chromosome1 GeneDB CDS 2146043 2146170 . + . mRNA SPAC23C11.08 ; colour "2" ;
chromosome1 GeneDB CDS 2146326 2146388 . + . mRNA SPAC23C11.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 2145780 2145785 . + . misc_feature unknown_1849 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB intron 2145780 2145926 . + . intron SPAC23C11.08 ; Alias "php3" ; db_xref "EMBL:X75072 ||| SPD:08/08D01" ; systematic_id "SPAC23C11.08" ; gene "php3 ||| SPAC23C11.08" ; primary_name "php3" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2145908 2145926 . + . misc_feature unknown_1850 ; colour "6" ; note "ctaatgtctgactttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2145988 2145993 . + . misc_feature unknown_1851 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB intron 2145988 2146042 . + . intron SPAC23C11.08 ; Alias "php3" ; db_xref "EMBL:X75072 ||| SPD:08/08D01" ; systematic_id "SPAC23C11.08" ; gene "php3 ||| SPAC23C11.08" ; primary_name "php3" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2146028 2146042 . + . misc_feature unknown_1852 ; colour "6" ; note "ctgaccatataatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2146171 2146176 . + . misc_feature unknown_1853 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB intron 2146171 2146325 . + . intron SPAC23C11.08 ; Alias "php3" ; db_xref "EMBL:X75072 ||| SPD:08/08D01" ; systematic_id "SPAC23C11.08" ; gene "php3 ||| SPAC23C11.08" ; primary_name "php3" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2146310 2146325 . + . misc_feature unknown_1854 ; colour "6" ; note "ctaacatctactctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2146389 2146784 . + . mRNA SPAC23C11.08 ; Alias "php3" ; ID "SPAC23C11.08" ; db_xref "EMBL:X75072 ||| SPD:08/08D01" ; systematic_id "SPAC23C11.08" ; gene "php3 ||| SPAC23C11.08" ; primary_name "php3" ;
chromosome1 GeneDB polyA_site 2146784 2146784 . + . mRNA SPAC23C11.08 ; temporary_systematic_id "SPAC23C11.08" ; colour "4" ; note "poly A attachment site" ;
chromosome1 GeneDB 5'-UTR 2147100 2147201 . + . mRNA SPAC23C11.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C11.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2147202 2150081 . + . mRNA SPAC23C11.09 ; systematic_id "SPAC23C11.09" ; colour "7" ; gene "SPAC23C11.09 ||| ars1 ||| ala1" ; Alias "ala1" ; db_xref "KEGG:MAP00252; ||| KEGG:MAP00970; ||| SPD:29/29F10" ; synonym "ars1" ; GO "GO:0006419; alanyl-tRNA aminoacylation
GO:0004813; alanine-tRNA ligase activity
GO:0005737; cytoplasm
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR335C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ala1" ; product "mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted)" ; EC_number "6.1.1.7" ;
chromosome1 GeneDB CDS 2147202 2150081 . + . mRNA SPAC23C11.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2150082 2150190 . + . mRNA SPAC23C11.09 ; ID "SPAC23C11.09" ; db_xref "SPD:29/29F10" ; systematic_id "SPAC23C11.09" ; gene "SPAC23C11.09 ||| ars1 ||| ala1" ; note "mRNA from spc10297" ;
chromosome1 GeneDB CDS_parts 2150624 2151601 . + . mRNA SPAC23C11.10 ; db_xref "SPD:42/42A03" ; systematic_id "SPAC23C11.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20020618 ||| term=human c16orf57 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YLR132C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; date=20100629" ; colour "10" ; gene "SPAC23C11.10" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB CDS 2150624 2150744 . + . mRNA SPAC23C11.10 ; colour "10" ;
chromosome1 GeneDB CDS 2150784 2150882 . + . mRNA SPAC23C11.10 ; colour "10" ;
chromosome1 GeneDB CDS 2150930 2151128 . + . mRNA SPAC23C11.10 ; colour "10" ;
chromosome1 GeneDB CDS 2151180 2151342 . + . mRNA SPAC23C11.10 ; colour "10" ;
chromosome1 GeneDB CDS 2151386 2151601 . + . mRNA SPAC23C11.10 ; colour "10" ;
chromosome1 GeneDB misc_feature 2150745 2150750 . + . misc_feature unknown_1855 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2150764 2150783 . + . misc_feature unknown_1856 ; colour "6" ; note "ttgataactcatattcttag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 2152042 2152153 . + . mRNA SPAC23C11.11 ; Alias "cka1" ; ID "SPAC23C11.11" ; systematic_id "SPAC23C11.11" ; gene "cka1 ||| orb5 ||| SPAC23C11.11" ; primary_name "cka1" ; note "mRNA from EMBL:L29508" ;
chromosome1 GeneDB CDS_parts 2152154 2153524 . + . mRNA SPAC23C11.11 ; systematic_id "SPAC23C11.11" ; colour "2" ; gene "cka1 ||| orb5 ||| SPAC23C11.11" ; Alias "cka1" ; db_xref "SPD:21/21B12" ; synonym "orb5" ; GO "GO:0031931; TORC 1 complex
GO:0031932; TORC 2 complex
GO:0005956; protein kinase CK2 complex
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0031929; TOR signaling pathway
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:8187760; date=20100731 ||| term=CK2 subfamily; db_xref=PMID:8264625; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8187760; date=19700101 ||| term=orthologous to S. cerevisiae YIL035C and YOR061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cka1" ; product "serine/threonine protein kinase Cka1" ; EC_number "2.7.11.1" ;
chromosome1 GeneDB CDS 2152154 2152199 . + . mRNA SPAC23C11.11 ; colour "2" ;
chromosome1 GeneDB CDS 2152260 2152540 . + . mRNA SPAC23C11.11 ; colour "2" ;
chromosome1 GeneDB CDS 2152699 2153011 . + . mRNA SPAC23C11.11 ; colour "2" ;
chromosome1 GeneDB CDS 2153073 2153374 . + . mRNA SPAC23C11.11 ; colour "2" ;
chromosome1 GeneDB CDS 2153468 2153524 . + . mRNA SPAC23C11.11 ; colour "2" ;
chromosome1 GeneDB misc_feature 2152200 2152205 . + . misc_feature unknown_1857 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 2152200 2152259 . + . intron SPAC23C11.11 ; Alias "cka1" ; db_xref "EMBL:X74275 ||| SPD:21/21B12" ; systematic_id "SPAC23C11.11" ; gene "cka1 ||| orb5 ||| SPAC23C11.11" ; primary_name "cka1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2152246 2152259 . + . misc_feature unknown_1858 ; colour "6" ; note "ctaattagatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2152541 2152546 . + . misc_feature unknown_1859 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 2152541 2152698 . + . intron SPAC23C11.11 ; Alias "cka1" ; db_xref "EMBL:X74275 ||| SPD:21/21B12" ; systematic_id "SPAC23C11.11" ; gene "cka1 ||| orb5 ||| SPAC23C11.11" ; primary_name "cka1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2152685 2152698 . + . misc_feature unknown_1860 ; colour "6" ; note "ctaatattttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2153012 2153017 . + . misc_feature unknown_1861 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2153012 2153072 . + . intron SPAC23C11.11 ; Alias "cka1" ; db_xref "EMBL:X74275 ||| SPD:21/21B12" ; systematic_id "SPAC23C11.11" ; gene "cka1 ||| orb5 ||| SPAC23C11.11" ; primary_name "cka1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2153058 2153072 . + . misc_feature unknown_1862 ; colour "6" ; note "ctaaccaaactttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2153375 2153380 . + . misc_feature unknown_1863 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2153375 2153467 . + . intron SPAC23C11.11 ; Alias "cka1" ; db_xref "EMBL:X74275 ||| SPD:21/21B12" ; systematic_id "SPAC23C11.11" ; gene "cka1 ||| orb5 ||| SPAC23C11.11" ; primary_name "cka1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2153454 2153467 . + . misc_feature unknown_1864 ; colour "6" ; note "ctaacttagcatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2153525 2154223 . + . mRNA SPAC23C11.11 ; Alias "cka1" ; ID "SPAC23C11.11" ; db_xref "SPD:21/21B12" ; systematic_id "SPAC23C11.11" ; gene "cka1 ||| orb5 ||| SPAC23C11.11" ; primary_name "cka1" ; note "mRNA from spc08605" ;
chromosome1 GeneDB CDS_parts 2154795 2155037 . + . mRNA SPAC23C11.12 ; systematic_id "SPAC23C11.12" ; colour "2" ; gene "hcn1 ||| SPAC23C11.12" ; db_xref "SPD:01/01B08" ; Alias "hcn1" ; GO "GO:0005680; anaphase-promoting complex
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0000920; cell separation during cytokinesis
GO:0016567; protein ubiquitination
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target of Cdc2; qualifier=in_vitro|phosphorylated_by; db_xref=PMID:16950791; date=20070216 ||| term=orthologous to S. cerevisiae YFR036W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; residue=Ser48; db_xref=PMID:16950791; date=20090213 ||| term=human CDC26 ortholog; date=20100212 ||| term=species distribution, conserved in Eukaryotes only; date=20100212 ||| term=species distribution, conserved in Vertebrates; date=20100212 ||| term=species distribution, conserved in Metazoa; date=20100212 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; primary_name "hcn1" ; product "anaphase-promoting complex subunit Hcn1" ;
chromosome1 GeneDB CDS 2154795 2155037 . + . mRNA SPAC23C11.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2155405 2155561 . - . mRNA SPAC23C11.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C11.13c" ; systematic_id "SPAC23C11.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2155562 2156456 . - . mRNA SPAC23C11.13c ; systematic_id "SPAC23C11.13c" ; colour "7" ; gene "hpt1 ||| SPAC23C11.13c" ; Alias "hpt1" ; db_xref "SPD:12/12C02" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004422; hypoxanthine phosphoribosyltransferase activity
GO:0032261; purine nucleoside salvage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Lesch-Nyhan syndrome and Kelley-Seegmiller syndrome; date=20060821 ||| term=orthologous to S. cerevisiae YDR399W and YJR133W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hpt1" ; product "xanthine phosphoribosyltransferase (predicted)" ; EC_number "2.4.2.8" ;
chromosome1 GeneDB CDS 2155562 2156048 . - . mRNA SPAC23C11.13c ; colour "7" ;
chromosome1 GeneDB CDS 2156323 2156456 . - . mRNA SPAC23C11.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 2156049 2156060 . - . misc_feature unknown_1865 ; colour "6" ; note "ctaatataacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2156317 2156322 . - . misc_feature unknown_1866 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2156455 2156507 . - . mRNA SPAC23C11.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C11.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2157794 2158195 . + . misc_RNA SPNCRNA.187 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.187" ; synonym "SPNG394" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2158659 2158811 . + . mRNA SPAC23C11.14 ; Alias "zhf1" ; ID "SPAC23C11.14" ; systematic_id "SPAC23C11.14" ; primary_name "zhf1" ; gene "zhf1 ||| SPAC23C11.14" ; note "mRNA from SPD236" ;
chromosome1 GeneDB CDS_parts 2158812 2159975 . + . mRNA SPAC23C11.14 ; systematic_id "SPAC23C11.14" ; colour "2" ; gene "zhf1 ||| SPAC23C11.14" ; Alias "zhf1" ; db_xref "SPD:18/18D05" ; synonym "zhf" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR243C and YOR316C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006882; zinc ion homeostasis
GO:0006876; cadmium ion homeostasis
GO:0006877; cobalt ion homeostasis
GO:0005789; endoplasmic reticulum membrane
GO:0005385; zinc ion transporter activity
GO:0071577; zinc ion transmembrane transport" ; primary_name "zhf1" ; product "zinc ion transporter Zhf1" ;
chromosome1 GeneDB CDS 2158812 2159975 . + . mRNA SPAC23C11.14 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2159976 2160086 . + . mRNA SPAC23C11.14 ; Alias "zhf1" ; ID "SPAC23C11.14" ; db_xref "SPD:18/18D05" ; systematic_id "SPAC23C11.14" ; primary_name "zhf1" ; gene "zhf1 ||| SPAC23C11.14" ; note "mRNA from SPD236 1 1428" ;
chromosome1 GeneDB 5'-UTR 2160523 2160571 . + . mRNA SPAC23C11.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23C11.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2160572 2163923 . + . mRNA SPAC23C11.15 ; systematic_id "SPAC23C11.15" ; colour "2" ; gene "pst2 ||| SPAC23C11.15" ; Alias "pst2" ; db_xref "SPD:48/48C01" ; GO "GO:0032221; Clr6 histone deacetylase complex
GO:0032221; Clr6 histone deacetylase complex II'
GO:0005634; nucleus
GO:0005515; protein binding
GO:0003714; transcription corepressor activity
GO:0006338; chromatin remodeling
GO:0006342; chromatin silencing
GO:0030261; chromosome condensation
GO:0016575; histone deacetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SIN3 family co-repressor; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17450151; date=19700101 ||| term=orthologous to S. cerevisiae YOL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pst2" ; product "Clr6 histone deacetylase complex subunit Pst2" ;
chromosome1 GeneDB CDS 2160572 2160602 . + . mRNA SPAC23C11.15 ; colour "2" ;
chromosome1 GeneDB CDS 2160649 2160829 . + . mRNA SPAC23C11.15 ; colour "2" ;
chromosome1 GeneDB CDS 2160908 2163923 . + . mRNA SPAC23C11.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 2160603 2160608 . + . misc_feature unknown_1867 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2160632 2160648 . + . misc_feature unknown_1868 ; colour "6" ; note "ttaaccaatgttgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2160830 2160835 . + . misc_feature unknown_1869 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2160892 2160907 . + . misc_feature unknown_1870 ; colour "6" ; note "ttaacatgaacattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2163924 2163930 . + . mRNA SPAC23C11.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23C11.15" ; systematic_id "SPAC23C11.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2164240 2166291 . + . mRNA SPAC23C11.16 ; systematic_id "SPAC23C11.16" ; colour "2" ; db_xref "SPD:27/27F06" ; Alias "plo1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7744248; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:7744248; date=20100726 ||| term=phenotype, multinucleate; db_xref=PMID:7744248; date=20100726 ||| term=misc, stress response pathway signalling (SRP), mediated phosphorylation of Ser402 regulates the timing of commitment to mitosis; db_xref=PMID:15917811; cv=misc; date=19700101 ||| term=misc, stress response pathway signalling (SRP), mediated phosphorylation of Ser402 ensures efficient reinitiation of tip growth and cell division during recovery from particular stress; db_xref=PMID:15917811; cv=misc; date=19700101 ||| term=misc, function depends on recruitment to the spindle pole body; db_xref=PMID:12186944; date=19700101 ||| term=misc, function depends on a functional spindle assembly checkpoint; db_xref=PMID:12186944; date=19700101 ||| term=localization, Polo box dependent; date=19700101 ||| term=target is MPF complex; db_xref=PMID:12815070; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YMR001C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; residue=S402; db_xref=PMID:15917811; date=20091223 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0005816; spindle pole body
; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0034605; cellular response to heat
GO:0000915; cytokinesis, contractile ring formation
GO:0010687; site selection involved in cell cycle cytokinesis
GO:0031031; positive regulation of septation initiation signaling
GO:0090307; spindle assembly involved in mitosis
GO:0007089; traversing start control point of mitotic cell cycle" ; primary_name "plo1" ; product "Polo kinase Plo1" ; EC_number "2.7.11.1" ;
chromosome1 GeneDB CDS 2164240 2166291 . + . mRNA SPAC23C11.16 ; colour "2" ;
chromosome1 GeneDB CDS_parts 2167170 2168683 . + . mRNA SPAC23C11.17 ; systematic_id "SPAC23C11.17" ; colour "7" ; gene "SPAC23C11.17 ||| mdm28" ; Alias "mdm28" ; db_xref "SPD:24/24E06" ; GO "GO:0007005; mitochondrion organization and biogenesis
GO:0005743; mitochondrial inner membrane
GO:0030007; potassium ion homeostasis
GO:0071805; potassium ion transmembrane transport
GO:0051204; protein insertion into mitochondrial membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPR125W and YOL027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human LETMa ortholog; date=20100614 ||| term=disease associated, Wolf- Hirschhorn syndrome; date=20100614" ; primary_name "mdm28" ; product "mitochondrial inner membrane protein involved in potassium ion transport Mdm28 (predicted)" ;
chromosome1 GeneDB CDS 2167170 2167245 . + . mRNA SPAC23C11.17 ; colour "7" ;
chromosome1 GeneDB CDS 2167302 2168683 . + . mRNA SPAC23C11.17 ; colour "7" ;
chromosome1 GeneDB misc_feature 2167246 2167251 . + . misc_feature unknown_1871 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB intron 2167246 2167301 . + . intron SPAC23C11.17 ; db_xref "SPD:24/24E06" ; systematic_id "SPAC23C11.17" ; gene "SPAC23C11.17" ; note "intron confirmed from EST" ;
chromosome1 GeneDB misc_feature 2167288 2167301 . + . misc_feature unknown_1872 ; colour "6" ; note "ctaacgttttgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2168684 2168987 . + . mRNA SPAC23C11.17 ; ID "SPAC23C11.17" ; db_xref "SPD:24/24E06" ; systematic_id "SPAC23C11.17" ; gene "SPAC23C11.17" ; note "from SPD117 D89117" ;
chromosome1 GeneDB polyA_site 2168987 2168987 . + . mRNA SPAC23C11.17 ; temporary_systematic_id "SPAC23C11.17" ; colour "4" ; note "poly A attachment site (predicted)" ;
chromosome1 GeneDB CDS_parts 2169185 2172095 . - . mRNA SPAC13F5.01c ; systematic_id "SPAC13F5.01c" ; colour "7" ; gene "msh1 ||| SPAC13F5.01c ||| SPAC23C11.18c" ; Alias "msh1" ; db_xref "SPD:47/47D11" ; synonym "SPAC23C11.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR120W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005524; ATP binding
GO:0006298; mismatch repair
GO:0005739; mitochondrion
GO:0030983; mismatched DNA binding
GO:0043504; mitochondrial DNA repair
GO:0008094; DNA-dependent ATPase activity" ; primary_name "msh1" ; product "mitochondrial MutS protein Msh1 (predicted)" ;
chromosome1 GeneDB CDS 2169185 2169267 . - . mRNA SPAC13F5.01c ; colour "7" ;
chromosome1 GeneDB CDS 2169308 2169392 . - . mRNA SPAC13F5.01c ; colour "7" ;
chromosome1 GeneDB CDS 2169438 2172095 . - . mRNA SPAC13F5.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 2169268 2169279 . - . misc_feature unknown_1873 ; colour "6" ; note "ctgacgctacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2169302 2169307 . - . misc_feature unknown_1874 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2169393 2169408 . - . misc_feature unknown_1875 ; colour "6" ; note "ttaactcgatacacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2169432 2169437 . - . misc_feature unknown_1876 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2171488 2171613 . + . misc_feature unknown_1877 ; note "nominal overlap with cosmid SPAC13F5 and cosmid SPAC23C11" ;
chromosome1 GeneDB 5'-UTR 2172094 2172127 . - . mRNA SPAC13F5.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13F5.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2172457 2172529 . - . mRNA SPAC13F5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13F5.02c" ; systematic_id "SPAC13F5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2172530 2173752 . - . mRNA SPAC13F5.02c ; systematic_id "SPAC13F5.02c" ; colour "2" ; gene "ptr6 ||| taf7 ||| SPAC13F5.02c" ; Alias "ptr6" ; db_xref "SPD:22/22B07" ; synonym "taf7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR227C; date=19700101 ||| term=human TAFI55 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016973; poly(A)+ mRNA export from nucleus
GO:0005669; transcription factor TFIID complex
GO:0005634; nucleus
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity" ; primary_name "ptr6" ; product "transcription factor TFIID complex subunit Taf7" ;
chromosome1 GeneDB CDS 2172530 2173383 . - . mRNA SPAC13F5.02c ; colour "2" ;
chromosome1 GeneDB CDS 2173425 2173752 . - . mRNA SPAC13F5.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 2173384 2173396 . - . misc_feature unknown_1878 ; colour "6" ; note "ttaacagagttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2173419 2173424 . - . misc_feature unknown_1879 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2173751 2173777 . - . mRNA SPAC13F5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13F5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 2173899 2174235 . - . LTR unknown_1880 ; note "Tf2 type ltr" ;
chromosome1 GeneDB 3'-UTR 2174878 2175007 . - . mRNA SPAC13F5.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13F5.03c" ; systematic_id "SPAC13F5.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2175008 2176360 . - . mRNA SPAC13F5.03c ; systematic_id "SPAC13F5.03c" ; colour "2" ; gene "SPAC13F5.03c ||| gld1" ; Alias "gld1" ; db_xref "SPD:20/20H10" ; GO "GO:0008270; zinc ion binding
GO:0008888; glycerol dehydrogenase activity
GO:0008888; glycerol dehydrogenase activity
GO:0006071; glycerol metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, regulated by glucose; db_xref=PMID:20396879; date=20100622 ||| term=warning, possible horizontal transfer; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100902" ; primary_name "gld1" ; product "mitochondrial glycerol dehydrogenase Gld1" ;
chromosome1 GeneDB CDS 2175008 2176360 . - . mRNA SPAC13F5.03c ; colour "2" ;
chromosome1 GeneDB CDS_parts 2177582 2178505 . - . mRNA SPAC13F5.04c ; db_xref "SPD:12/12H02" ; systematic_id "SPAC13F5.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR181C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005768; endosome
GO:0005771; multivesicular body
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; gene "SPAC13F5.04c" ; product "endosomal sorting protein (predicted)" ;
chromosome1 GeneDB CDS 2177582 2178355 . - . mRNA SPAC13F5.04c ; colour "7" ;
chromosome1 GeneDB CDS 2178446 2178505 . - . mRNA SPAC13F5.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 2178356 2178376 . - . misc_feature unknown_1881 ; colour "6" ; note "ctaacccctattgctacgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2178440 2178445 . - . misc_feature unknown_1882 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 2178651 2179482 . - . mRNA SPAC13F5.08 ; Alias "vts1" ; systematic_id "SPAC13F5.08" ; synonym "new6" ; colour "7" ; GO "GO:0005768; endosome
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathhway" ; controlled_curation "term=conserved in Fungi; date=20090716 ||| term=conserved in Eukaryotes; date=20090716 ||| term=conserved in Eukaryotes only; date=20090716 ||| term=conserved in Metazoa; date=20090716 ||| term=conserved in Vertebrates; date=20090716 ||| term=similar to S. cerevisiae YLR181C; date=20090716 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; gene "SPAC13F5.08" ; primary_name "vts1" ; product "Vps20 associated proten Vts1 (predicted)" ;
chromosome1 GeneDB CDS 2178651 2178887 . - . mRNA SPAC13F5.08 ; colour "7" ;
chromosome1 GeneDB CDS 2179020 2179117 . - . mRNA SPAC13F5.08 ; colour "7" ;
chromosome1 GeneDB CDS 2179380 2179482 . - . mRNA SPAC13F5.08 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2179936 2180071 . + . mRNA SPAC13F5.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13F5.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2180072 2181163 . + . mRNA SPAC13F5.05 ; db_xref "SPD:17/17A11" ; systematic_id "SPAC13F5.05" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YOR288C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005788; endoplasmic reticulum lumen
GO:0003756; protein disulfide isomerase activity
GO:0006457; protein folding
GO:0034605; cellular response to heat
GO:0015035; protein disulfide oxidoreductase activity" ; gene "SPAC13F5.05" ; product "thioredoxin family protein (predicted)" ; EC_number "5.3.4.1" ;
chromosome1 GeneDB CDS 2180072 2181163 . + . mRNA SPAC13F5.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2181164 2181257 . + . mRNA SPAC13F5.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13F5.05" ; systematic_id "SPAC13F5.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2181533 2181566 . - . mRNA SPAC13F5.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13F5.06c" ; systematic_id "SPAC13F5.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2181567 2184376 . - . mRNA SPAC13F5.06c ; systematic_id "SPAC13F5.06c" ; colour "7" ; gene "sec10 ||| SPAC13F5.06c" ; Alias "sec10" ; db_xref "SPD:29/29E02" ; GO "GO:0000145; exocyst
GO:0006904; vesicle docking during exocytosis
GO:0006886; intracellular protein transport
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0051285; cell cortex of cell tip
GO:0032153; cell division site" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec10" ; product "exocyst complex subunit Sec10 (predicted)" ;
chromosome1 GeneDB CDS 2181567 2181723 . - . mRNA SPAC13F5.06c ; colour "7" ;
chromosome1 GeneDB CDS 2181767 2181868 . - . mRNA SPAC13F5.06c ; colour "7" ;
chromosome1 GeneDB CDS 2181925 2183959 . - . mRNA SPAC13F5.06c ; colour "7" ;
chromosome1 GeneDB CDS 2184189 2184267 . - . mRNA SPAC13F5.06c ; colour "7" ;
chromosome1 GeneDB CDS 2184314 2184376 . - . mRNA SPAC13F5.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 2181724 2181734 . - . misc_feature unknown_1883 ; colour "6" ; note "ttaacatttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2181724 2181766 . - . intron SPAC13F5.06c ; Alias "sec10" ; db_xref "SPD:29/29E02" ; systematic_id "SPAC13F5.06c" ; primary_name "sec10" ; gene "sec10 ||| SPAC13F5.06c" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 2181761 2181766 . - . misc_feature unknown_1884 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2181869 2181882 . - . misc_feature unknown_1885 ; colour "6" ; note "ctgactttatctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2181869 2181924 . - . intron SPAC13F5.06c ; Alias "sec10" ; db_xref "SPD:29/29E02" ; systematic_id "SPAC13F5.06c" ; primary_name "sec10" ; gene "sec10 ||| SPAC13F5.06c" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 2181919 2181924 . - . misc_feature unknown_1886 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2183960 2183976 . - . misc_feature unknown_1887 ; colour "6" ; note "ctaacagaatgtttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2184183 2184188 . - . misc_feature unknown_1888 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2184268 2184281 . - . misc_feature unknown_1889 ; colour "6" ; note "ctaacagattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2184308 2184313 . - . misc_feature unknown_1890 ; colour "6" ; note "gtaacc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2184375 2184448 . - . mRNA SPAC13F5.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13F5.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2184865 2185551 . - . mRNA SPAC13F5.07c ; db_xref "SPD:01/01F08" ; systematic_id "SPAC13F5.07c" ; colour "10" ; controlled_curation "term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; GO "GO:0034599; cellular response to oxidative stress" ; gene "SPAC13F5.07c" ; product "zf PARP type zinc finger protein" ;
chromosome1 GeneDB CDS 2184865 2185282 . - . mRNA SPAC13F5.07c ; colour "10" ;
chromosome1 GeneDB CDS 2185472 2185551 . - . mRNA SPAC13F5.07c ; colour "10" ;
chromosome1 GeneDB misc_feature 2185147 2185287 . + . misc_feature unknown_1891 ; note "nominal overlap with SPBC2A9 S. pombe chromosome 2" ;
chromosome1 GeneDB misc_feature 2186462 2186580 . + . misc_feature unknown_1892 ; note "nominal overlap with SPAC1783 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 2186462 2186581 . + . misc_feature unknown_1893 ; note "nominal overlap with cosmid SPAC13F5 S. pombe chromosome 1" ;
chromosome1 GeneDB LTR 2186786 2187129 . + . LTR unknown_1894 ; note "Tf2-type LTR" ;
chromosome1 GeneDB 5'-UTR 2187251 2187553 . + . mRNA SPAC1783.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1783.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2187554 2189305 . + . mRNA SPAC1783.01 ; db_xref "SPD:45/45G07" ; systematic_id "SPAC1783.01" ; colour "7" ; GO "GO:0050660; FAD binding
GO:0030586; [mehtionine synthase] reductase activity
GO:0009086; methionine biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC12C2.03c; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human MTRR ortholog; date=20100625" ; gene "SPAC1783.01" ; product "methionine synthase reductase (predicted)" ; EC_number "1.16.1.18" ;
chromosome1 GeneDB CDS 2187554 2189305 . + . mRNA SPAC1783.01 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2189306 2189342 . + . mRNA SPAC1783.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1783.01" ; systematic_id "SPAC1783.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2189396 2189506 . - . mRNA SPAC1783.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1783.02c" ; systematic_id "SPAC1783.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2189507 2190674 . - . mRNA SPAC1783.02c ; systematic_id "SPAC1783.02c" ; colour "7" ; gene "vps66 ||| SPAC1783.02c" ; Alias "vps66" ; db_xref "SPD:18/18E02" ; GO "GO:0008415; acyltransferase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPR139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps66" ; product "acyltransferase (predicted)" ; EC_number "2.3.1.-" ;
chromosome1 GeneDB CDS 2189507 2189845 . - . mRNA SPAC1783.02c ; colour "7" ;
chromosome1 GeneDB CDS 2189907 2190180 . - . mRNA SPAC1783.02c ; colour "7" ;
chromosome1 GeneDB CDS 2190245 2190509 . - . mRNA SPAC1783.02c ; colour "7" ;
chromosome1 GeneDB CDS 2190566 2190674 . - . mRNA SPAC1783.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 2189846 2189858 . - . misc_feature unknown_1895 ; colour "6" ; note "ctgatcattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2189901 2189906 . - . misc_feature unknown_1896 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2190181 2190194 . - . misc_feature unknown_1897 ; colour "6" ; note "ctaatcatgagtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2190239 2190244 . - . misc_feature unknown_1898 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2190510 2190522 . - . misc_feature unknown_1899 ; colour "6" ; note "ttaacccttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2190560 2190565 . - . misc_feature unknown_1900 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2190673 2190826 . - . mRNA SPAC1783.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1783.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2190880 2191007 . + . mRNA SPAC1783.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1783.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2191008 2192063 . + . mRNA SPAC1783.03 ; systematic_id "SPAC1783.03" ; colour "2" ; gene "fta2 ||| SPAC1783.03 ||| sma2" ; Alias "fta2" ; db_xref "SPD:16/16B06" ; synonym "sma2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16855021; date=20070216 ||| term=species distribution, conserved in Fungi; date=20100919 ||| term=species distribution, conserved in Fungi only; date=20100919 ||| term=species distribution, conserved in Eukaryotes; date=20100919 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100919 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; kinetochore
; protein binding
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0034613; cellular protein localization
GO:0000819; sister chromatid segregation" ; primary_name "fta2" ; product "Sim4 and Mal2 associated (4 and 2 associated) protein 2" ;
chromosome1 GeneDB CDS 2191008 2192063 . + . mRNA SPAC1783.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2192092 2192108 . - . mRNA SPAC1783.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1783.04c" ; systematic_id "SPAC1783.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2192109 2193481 . - . mRNA SPAC1783.04c ; systematic_id "SPAC1783.04c" ; colour "2" ; gene "hst4 ||| SPAC1783.04c" ; Alias "hst4" ; db_xref "SPD:21/21C06" ; GO "GO:0000790; nuclear chromatin
GO:0016585; chromatin remodeling complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0017136; NAD-dependent histone deacetylase activity
GO:0016566; specific transcriptional repressor activity
GO:0003714; transcription corepressor activity
; DNA damage checkpoint
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0006348; chromatin silencing at telomere
GO:0071572; histone H3-K56 deactylation
GO:0016575; histone deacetylation
GO:0000070; mitotic sister chromatid segregation
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0060303; regulation of nucleosome density
GO:0006974; response to DNA damage stimulus
GO:2000283; negative regulation of cellular amino acid biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth defect, slow growth; cv=phenotype; db_xref=PMID:10512858; date=20091221 ||| term=phenotype, DNA fragmentation; cv=phenotype; db_xref=PMID:18344406; date=20091221 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|low_penetrance; cv=phenotype; db_xref=PMID:10512858; date=20091221 ||| term=phenotype, chromosome segregation defects, chromosome loss; cv=phenotype; db_xref=PMID:10512858; date=20091221 ||| term=phenotype, sensitive to MMS; cv=phenotype; db_xref=PMID:18344406; date=20091221 ||| term=phenotype, DNA damage checkpoint defects; cv=phenotype; db_xref=PMID:18344406; date=20091221 ||| term=orthologous to S. cerevisiae YDR191W and YOR025W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, cell cycle regulated; cv=gene_ex; db_xref=PMID:18344406; date=20091221" ; primary_name "hst4" ; product "Sir2 family histone deacetylase Hst4" ;
chromosome1 GeneDB CDS 2192109 2193163 . - . mRNA SPAC1783.04c ; colour "2" ;
chromosome1 GeneDB CDS 2193289 2193481 . - . mRNA SPAC1783.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 2193164 2193180 . - . misc_feature unknown_1901 ; colour "6" ; note "ctaatacgtttaaacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2193164 2193288 . - . intron SPAC1783.04c ; Alias "hst4" ; db_xref "SPD:21/21C06" ; systematic_id "SPAC1783.04c" ; primary_name "hst4" ; gene "hst4 ||| SPAC1783.04c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2193283 2193288 . - . misc_feature unknown_1902 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2193480 2193631 . - . mRNA SPAC1783.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1783.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2194842 2195016 . + . mRNA SPAC1783.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1783.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2195017 2199138 . + . mRNA SPAC1783.05 ; systematic_id "SPAC1783.05" ; colour "2" ; gene "hrp1 ||| chd1 ||| SPAC1783.05" ; Alias "hrp1" ; db_xref "SPD:48/48G01" ; synonym "chd1" ; GO "GO:0000779; condensed chromosome, pericentric region
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0004003; ATP-dependent DNA helicase activity
GO:0003677; DNA binding
GO:0008094; DNA-dependent ATPase activity
GO:0005515; protein binding
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0048096; chromatin-mediated maintenance of transcription
GO:0007076; mitotic chromosome condensation
GO:0035067; negative regulation of histone acetylation
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0006369; transcription termination from RNA polymerase II promoter
GO:0060303; regulation of nucleosome density" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=chromodomain protein; date=19700101 ||| term=orthologous to S. cerevisiae YER164W; date=19700101 ||| term=misc, targets correlated with Clr3 and Sir2 targets; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=misc, overlapping genome wide occupancy in coding regions Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=misc, overlapping genome wide occupancy in promoters Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Helicase- Related protein from S. Pombe; cv=name_description; date=20100126 ||| term=human CHD1 and CHD2 ortholog; date=20100908" ; primary_name "hrp1" ; product "ATP-dependent DNA helicase Hrp1" ;
chromosome1 GeneDB CDS 2195017 2199138 . + . mRNA SPAC1783.05 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2199139 2199297 . + . mRNA SPAC1783.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1783.05" ; systematic_id "SPAC1783.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2199448 2199964 . - . mRNA SPAC1783.06c ; systematic_id "SPAC1783.06c" ; colour "2" ; db_xref "SPD:05/05B01" ; Alias "atg12" ; synonym "apg12" ; GO "GO:0005737; cytoplasm
GO:0019776; Atg8 ligase activity
GO:0031386; protein tag
GO:0006501; C-terminal protein lipidation
GO:0030437; ascospore formation
GO:0000045; autophagic vacuole formation
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032258; CVT pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR217W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Atg5; qualifier=predicted; date=20091125 ||| term=phenotype, sporulation defects; db_xref=PMID:19778961; cv=phenotype; date=20091126" ; primary_name "atg12" ; product "autophagy associated ubiquitin-like modifier Atg12" ;
chromosome1 GeneDB CDS 2199448 2199570 . - . mRNA SPAC1783.06c ; colour "2" ;
chromosome1 GeneDB CDS 2199625 2199761 . - . mRNA SPAC1783.06c ; colour "2" ;
chromosome1 GeneDB CDS 2199826 2199964 . - . mRNA SPAC1783.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 2199571 2199588 . - . misc_feature unknown_1903 ; colour "6" ; note "ctaacttataatccatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2199619 2199624 . - . misc_feature unknown_1904 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2199762 2199778 . - . misc_feature unknown_1905 ; colour "6" ; note "ttaaccattatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2199820 2199825 . - . misc_feature unknown_1906 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2199963 2200122 . - . mRNA SPAC1783.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1783.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2200560 2200588 . - . mRNA SPAC1783.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1783.07c" ; systematic_id "SPAC1783.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2200589 2202247 . - . mRNA SPAC1783.07c ; systematic_id "SPAC1783.07c" ; colour "2" ; gene "pap1 ||| SPAC1783.07c" ; Alias "pap1" ; db_xref "SPD:40/40F06" ; synonym "caf3" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bZIP (basic leucine zipper) transcription factor family; date=19700101 ||| term=localization, undergoes nucleocytoplasmic shuttling; cv=localization; date=19700101 ||| term=orthologous to S. cerevisiae YML007W; date=19700101 ||| term=protein sequence feature, NES; cv=sequence_feature; db_xref=PMID:14758541; evidence=IMP; allele=caf3-89; date=19700101 ||| term=gene expression, expression induced by stress; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulates trr1; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulates obr1; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=DNA binding specificity, binds 5'-TGACTCA-3'; date=20091213 ||| term=modification, disulphide bond; cv=pt_mod; db_xref=PMID:15165244; date=20100122" ; GO "GO:0035267; NuA4 histone acetyltransferase complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0071243; cellular response to arsenic
GO:0071313; cellular response to caffeine
GO:0070301; cellular response to hydrogen peroxide
GO:0070301; cellular response to hydrogen peroxide
GO:0070301; cellular response to hydrogen peroxide
GO:0006995; cellular response to nitrogen starvation
GO:0034599; cellular response to oxidative stress
GO:0016573; histone acetylation
GO:0006355; regulation of transcription, DNA- dependent
GO:0051595; response to methylglyoxal" ; primary_name "pap1" ; product "transcription factor Pap1/Caf3" ;
chromosome1 GeneDB CDS 2200589 2202247 . - . mRNA SPAC1783.07c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2202246 2202981 . - . mRNA SPAC1783.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1783.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2203695 2203740 . - . mRNA SPAC1783.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1783.08c" ; systematic_id "SPAC1783.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2203741 2204346 . - . mRNA SPAC1783.08c ; systematic_id "SPAC1783.08c" ; colour "7" ; gene "rpl1502 ||| rpl15-2 ||| SPAC1783.08c" ; Alias "rpl1502" ; db_xref "SPD:31/31F08" ; synonym "rpl15-2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR029C and YMR121C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl1502" ; product "60S ribosomal protein L15b (predicted)" ;
chromosome1 GeneDB CDS 2203741 2204346 . - . mRNA SPAC1783.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2204345 2204355 . - . mRNA SPAC1783.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1783.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2205162 2208095 . - . mRNA SPAC1327.01c ; db_xref "SPD:47/47E07" ; systematic_id "SPAC1327.01c" ; synonym "SPAC1783.09c ||| SPAC18G6.16c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPBC530.11c and SPAPB1A11.04C; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome1 GeneDB CDS 2205162 2208095 . - . mRNA SPAC1327.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 2205791 2205930 . + . misc_feature unknown_1907 ; note "nominal overlap with cosmid SPAC1783 and cosmid SPAC1327" ;
chromosome1 GeneDB misc_feature 2207903 2208000 . + . misc_feature unknown_1908 ; note "nominal overlap with cosmid SPAC1327 and cosmid SPAC18G6" ;
chromosome1 GeneDB 5'-UTR 2208094 2208207 . - . mRNA SPAC1327.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1327.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2209305 2209895 . - . mRNA SPAC18G6.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18G6.01c" ; systematic_id "SPAC18G6.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2209896 2210675 . - . mRNA SPAC18G6.01c ; db_xref "SPD:09/09G02" ; systematic_id "SPAC18G6.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR198C and YHR199C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Fungi only; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC18G6.01c" ; product "calchone related protein family" ;
chromosome1 GeneDB CDS 2209896 2210675 . - . mRNA SPAC18G6.01c ; colour "10" ;
chromosome1 GeneDB 3'-UTR 2210903 2210976 . - . mRNA SPAC18G6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18G6.02c" ; systematic_id "SPAC18G6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2210977 2213859 . - . mRNA SPAC18G6.02c ; systematic_id "SPAC18G6.02c" ; colour "2" ; gene "chp1 ||| SPAC18G6.02c" ; db_xref "SPD:47/47D04" ; Alias "chp1" ; GO "GO:0030958; RITS complex
GO:0005721; centric heterochromatin
GO:0000775; chromosome, pericentric region
GO:0031934; mating-type region heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0031060; regulation of histone methylation
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization to chromosome, centromeric region
GO:0031048; small RNA-mediated chromatin silencing
GO:0031048; small RNA-mediated chromatin silencing
; nucleosomal histone binding" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=chromodomain protein; date=19700101 ||| term=rrm RNA recognition motif; db_xref=PMID:15743828; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, CHromodomain Protein; cv=name_description; date=20100126 ||| term=phenotype, siRNAs homologous to outer repeats undetectable; cv=phenotype; date=20100318" ; primary_name "chp1" ; product "chromodomain protein Chp1" ;
chromosome1 GeneDB CDS 2210977 2213859 . - . mRNA SPAC18G6.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2213858 2214310 . - . mRNA SPAC18G6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18G6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 2214733 2214814 . - . tRNA SPATRNAVAL.03 ; systematic_id "SPATRNAVAL.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033442; AAC codon-amino acid adaptor activity" ; gene "SPATRNAVAL.03" ; product "tRNA Valine" ; note "tRNA Val anticodon AAC, Cove score 63.53" ;
chromosome1 GeneDB intron 2214769 2214776 . - . intron SPATRNAVAL.03 ; systematic_id "SPATRNAVAL.03" ; note "intron tRNA Val anticodon AAC" ;
chromosome1 GeneDB 5'-UTR 2215667 2215735 . + . mRNA SPAC18G6.03 ; Alias "ypt3" ; ID "SPAC18G6.03" ; db_xref "EMBL:X52732" ; systematic_id "SPAC18G6.03" ; primary_name "ypt3" ; gene "ypt3 ||| SPAC18G6.03" ;
chromosome1 GeneDB intron 2215736 2215791 . + . intron SPAC18G6.03 ; Alias "ypt3" ; db_xref "SPD:13/13C02 ||| EMBL:X52732" ; systematic_id "SPAC18G6.03" ; primary_name "ypt3" ; note "confirmed by mRNA" ;
chromosome1 GeneDB CDS_parts 2215815 2216757 . + . mRNA SPAC18G6.03 ; systematic_id "SPAC18G6.03" ; colour "2" ; gene "ypt3 ||| SPAC18G6.03" ; Alias "ypt3" ; db_xref "SPD:13/13C02" ; GO "GO:0005737; cytoplasm
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0031505; cell wall organization and biogenesis
GO:0033205; cell cycle cytokinesis
GO:0006887; exocytosis
GO:0006886; intracellular protein transport
GO:0007264; small GTPase mediated signal transduction
GO:0042144; vacuole fusion, non-autophagic" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:2328721; date=19700101 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:17287513; date=20100917 ||| term=Ypt subfamily; date=19700101 ||| term=modification, gerenylgerenylated; cv=pt_mod; db_xref=PMID:1597466; date=19700101 ||| term=orthologous to S. cerevisiae YER031C and YGL210W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ypt3" ; product "GTPase Ypt3" ;
chromosome1 GeneDB CDS 2215815 2216241 . + . mRNA SPAC18G6.03 ; colour "2" ;
chromosome1 GeneDB CDS 2216486 2216566 . + . mRNA SPAC18G6.03 ; colour "2" ;
chromosome1 GeneDB CDS 2216621 2216757 . + . mRNA SPAC18G6.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 2216242 2216247 . + . misc_feature unknown_1909 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB intron 2216242 2216485 . + . intron SPAC18G6.03 ; Alias "SPAC18G6.03" ; db_xref "EMBL:X52732 ||| SPD:13/13C02" ; systematic_id "SPAC18G6.03" ; gene "ypt3 ||| SPAC18G6.03" ; primary_name "SPAC18G6.03" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2216471 2216485 . + . misc_feature unknown_1910 ; colour "2" ; note "splice branch and acceptor sequence, ctaatgtttttacag" ;
chromosome1 GeneDB misc_feature 2216567 2216572 . + . misc_feature unknown_1911 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB intron 2216567 2216620 . + . intron SPAC18G6.03 ; Alias "ypt3" ; db_xref "EMBL:X52732 ||| SPD:13/13C02" ; systematic_id "SPAC18G6.03" ; gene "ypt3 ||| SPAC18G6.03" ; primary_name "ypt3" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2216607 2216620 . + . misc_feature unknown_1912 ; colour "2" ; note "splice branch and acceptor sequence, ctaatctagcgta g" ;
chromosome1 GeneDB 3'-UTR 2216758 2217090 . + . mRNA SPAC18G6.03 ; Alias "ypt3" ; ID "SPAC18G6.03" ; db_xref "EMBL:X52732 ||| SPD:13/13C02" ; systematic_id "SPAC18G6.03" ; primary_name "ypt3" ; gene "ypt3 ||| SPAC18G6.03" ;
chromosome1 GeneDB 3'-UTR 2217115 2217186 . - . mRNA SPAC18G6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18G6.04c" ; systematic_id "SPAC18G6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2217187 2218605 . - . mRNA SPAC18G6.04c ; systematic_id "SPAC18G6.04c" ; colour "7" ; gene "shm2 ||| SPAC18G6.04c" ; note "possibly spliced at 5' end (9288..10667, 10814..10897)" ; Alias "shm2" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00310; ||| KEGG:MAP00460; ||| KEGG:MAP00670; ||| KEGG:MAP00680; ||| SPD:21/21G12" ; GO "GO:0005739; mitochondrion
GO:0004372; glycine hydroxymethyltransferase activity
GO:0009070; serine family amino acid biosynthetic process
GO:0006544; glycine metabolism
GO:0006730; one-carbon compound metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR263W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "shm2" ; product "serine hydroxymethyltransferase Shm2 (predicted)" ; EC_number "2.1.2.1" ;
chromosome1 GeneDB CDS 2217187 2218605 . - . mRNA SPAC18G6.04c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2219205 2219254 . - . mRNA SPAC18G6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18G6.05c" ; systematic_id "SPAC18G6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2219255 2227340 . - . mRNA SPAC18G6.05c ; db_xref "SPD:34/34D03" ; systematic_id "SPAC18G6.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YGL195W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006448; regulation of translational elongation" ; gene "SPAC18G6.05c" ; product "translation elongation regulator Gcn1 (predicted)" ;
chromosome1 GeneDB CDS 2219255 2227119 . - . mRNA SPAC18G6.05c ; colour "7" ;
chromosome1 GeneDB CDS 2227193 2227340 . - . mRNA SPAC18G6.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 2227120 2227136 . - . misc_feature unknown_1913 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttttcatttc ag" ;
chromosome1 GeneDB intron 2227120 2227192 . - . intron SPAC18G6.05c ; db_xref "SPD:34/34D03" ; systematic_id "SPAC18G6.05c" ; gene "SPAC18G6.05c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2227187 2227192 . - . misc_feature unknown_1914 ; colour "2" ; note "splice donor sequence, gtaatt" ;
chromosome1 GeneDB 5'-UTR 2227339 2227348 . - . mRNA SPAC18G6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18G6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2228049 2228781 . + . misc_RNA SPNCRNA.188 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.188" ; synonym "SPNG408" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2228994 2229014 . + . mRNA SPAC18G6.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18G6.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2229015 2229764 . + . mRNA SPAC18G6.06 ; db_xref "SPD:43/43B01" ; systematic_id "SPAC18G6.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL099C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding" ; gene "SPAC18G6.06" ; product "U3 snoRNP-associated protein Utp11 (predicted)" ;
chromosome1 GeneDB CDS 2229015 2229764 . + . mRNA SPAC18G6.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2229765 2229985 . + . mRNA SPAC18G6.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18G6.06" ; systematic_id "SPAC18G6.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2229985 2230332 . - . mRNA SPAC18G6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18G6.07c" ; systematic_id "SPAC18G6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2230333 2231412 . - . mRNA SPAC18G6.07c ; systematic_id "SPAC18G6.07c" ; colour "2" ; gene "mra1 ||| SPAC18G6.07c" ; Alias "mra1" ; db_xref "SPD:16/16G05" ; GO "GO:0031167; rRNA methylation
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0000747; conjugation with cellular fusion
GO:0005880; nuclear microtubule
GO:0070037; rRNA (pseudouridine) methytransferase activity
GO: SF not requested remove parent should be requested by SGD; rRNA (pseudouridine-N1-)- methytransferase activity
GO: SF NEW; rRNA pseudouridine methylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9133664; date=19700101 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=orthologous to S. cerevisiae YLR186W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=disease associated, Bowen Conradi syndrome; date=20101121" ; primary_name "mra1" ; product "ribosome biogenesis protein Mra1" ;
chromosome1 GeneDB CDS 2230333 2231412 . - . mRNA SPAC18G6.07c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2231411 2231472 . - . mRNA SPAC18G6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18G6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2231803 2233148 . - . mRNA SPAC18G6.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18G6.09c" ; systematic_id "SPAC18G6.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2233149 2234087 . - . mRNA SPAC18G6.09c ; db_xref "SPD:13/13B08" ; systematic_id "SPAC18G6.09c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis
GO:0034599; cellular response to oxidative stress" ; gene "SPAC18G6.09c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2233149 2234087 . - . mRNA SPAC18G6.09c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 2234086 2234167 . - . mRNA SPAC18G6.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18G6.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2234276 2234597 . + . mRNA SPAC18G6.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18G6.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2234598 2236664 . + . mRNA SPAC18G6.10 ; systematic_id "SPAC18G6.10" ; colour "2" ; gene "lem2 ||| heh1 ||| SPAC18G6.10" ; Alias "heh1" ; db_xref "SPD:46/46D11" ; synonym "lem2" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR458C and YML034W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Lap-Emerin- Man domain protein; date=20090625 ||| term=LEM domain; date=20090625 ||| term=name description, Helix- Extension-Helix domain protein; date=20090625" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0005639; integral to nuclear inner membrane
GO:0007127; meiosis I
GO:0007126; meiosis" ; primary_name "heh1" ; product "LEM domain protein Heh1/Lem2" ;
chromosome1 GeneDB CDS 2234598 2236664 . + . mRNA SPAC18G6.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2236665 2236695 . + . mRNA SPAC18G6.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18G6.10" ; systematic_id "SPAC18G6.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2236861 2236995 . - . mRNA SPAC18G6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18G6.11c" ; systematic_id "SPAC18G6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2236996 2238795 . - . mRNA SPAC18G6.11c ; systematic_id "SPAC18G6.11c" ; colour "2" ; gene "rrn3 ||| SPAC18G6.11c" ; Alias "rrn3" ; db_xref "SPD:36/36D11" ; GO "GO:0000120; RNA polymerase I transcription factor complex
GO:0006360; transcription from RNA polymerase I promoter
GO:0003701; RNA polymerase I transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12207036; date=19700101 ||| term=orthologous to S. cerevisiae YKL125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rrn3" ; product "ribosomal DNA (rDNA) transcription factor Rrn3" ;
chromosome1 GeneDB CDS 2236996 2238795 . - . mRNA SPAC18G6.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2238794 2239226 . - . mRNA SPAC18G6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18G6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2239393 2239500 . - . mRNA SPAC18G6.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18G6.12c" ; systematic_id "SPAC18G6.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2239501 2240430 . - . mRNA SPAC18G6.12c ; systematic_id "SPAC18G6.12c" ; colour "12" ; gene "SPAC18G6.12c" ; obsolete_name "B22918-1" ; db_xref "SPD:13/13A04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, identified in S. pombe only; date=20081110" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; product "hypothetical protein" ;
chromosome1 GeneDB CDS 2239501 2240430 . - . mRNA SPAC18G6.12c ; colour "12" ;
chromosome1 GeneDB 5'-UTR 2240429 2240546 . - . mRNA SPAC18G6.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18G6.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2241013 2241357 . + . mRNA SPAC18G6.13 ; db_xref "SPD:02/02B03" ; systematic_id "SPAC18G6.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC18G6.13" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2241013 2241357 . + . mRNA SPAC18G6.13 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 2241748 2241935 . - . mRNA SPAC18G6.14c ; Alias "rps7" ; ID "SPAC18G6.14c" ; db_xref "SPD:06/06D07" ; systematic_id "SPAC18G6.14c" ; primary_name "rps7" ; gene "rps7 ||| SPAC18G6.14c" ; note "mRNA from AU011818" ;
chromosome1 GeneDB CDS_parts 2241936 2242523 . - . mRNA SPAC18G6.14c ; systematic_id "SPAC18G6.14c" ; colour "7" ; gene "rps7 ||| SPAC18G6.14c" ; Alias "rps7" ; db_xref "SPD:06/06D07" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0042254; ribosome biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR096W and YNL096C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps7" ; product "40S ribosomal protein S7 (predicted)" ;
chromosome1 GeneDB CDS 2241936 2242523 . - . mRNA SPAC18G6.14c ; colour "7" ;
chromosome1 GeneDB promoter 2242572 2242579 . - . promoter unknown_1915 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB 5'-UTR 2243626 2243635 . + . mRNA SPAC18G6.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC18G6.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2243636 2244622 . + . mRNA SPAC18G6.15 ; systematic_id "SPAC18G6.15" ; colour "2" ; gene "mal3 ||| SPAC18G6.15" ; Alias "mal3" ; db_xref "SPD:14/14C11" ; GO "GO:0000235; astral microtubule
GO:0051285; cell cortex of cell tip
GO:0005737; cytoplasm
GO:0005881; cytoplasmic microtubule
GO:0005881; cytoplasmic microtubule
GO:0005828; kinetochore microtubule
GO:0015630; microtubule cytoskeleton
GO:0015630; microtubule cytoskeleton
GO:0051233; spindle midzone
GO:0051010; microtubule plus-end binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0007019; microtubule depolymerization
GO:0046785; microtubule polymerization
GO:0007018; microtubule-based movement
GO:0008360; regulation of cell shape
GO:0010570; regulation of filamentous growth
GO:0007088; regulation of mitosis
GO:0007088; regulation of mitosis
GO:0007088; regulation of mitosis
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, plus end tracking protein; cv=m_f_g; date=20060411 ||| term=calponin homology (CH) domain; date=19700101 ||| term=orthologous to S. cerevisiae YER016W; date=19700101 ||| term=complementation, functionally complemented by human EB1; cv=complementation; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16394105; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, filament morphology aberrant; qualifier=deletion; db_xref=PMID:19542312; date=20090706" ; primary_name "mal3" ; product "EB1 family Mal3" ;
chromosome1 GeneDB CDS 2243636 2243677 . + . mRNA SPAC18G6.15 ; colour "2" ;
chromosome1 GeneDB CDS 2243738 2244622 . + . mRNA SPAC18G6.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 2243678 2243683 . + . misc_feature unknown_1916 ; colour "2" ; note "splice donor sequence, gtacgc" ;
chromosome1 GeneDB misc_feature 2243722 2243737 . + . misc_feature unknown_1917 ; colour "2" ; note "splice branch and acceptor sequence, ctgacttattttaaa g" ;
chromosome1 GeneDB 3'-UTR 2244623 2245166 . + . mRNA SPAC18G6.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC18G6.15" ; systematic_id "SPAC18G6.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2245427 2245505 . + . misc_feature unknown_1918 ; note "nominal overlap with cosmid SPAC18G6, EM:Z68198 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 2245427 2245523 . + . misc_feature unknown_1919 ; note "nominal overlap with cosmid SPAC13D6, EM:Z69725 S. pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 2245786 2247081 . + . mRNA SPAC13D6.01 ; systematic_id "SPAC13D6.01" ; colour "2" ; gene "pof14 ||| SPAC13D6.01" ; Alias "pof14" ; db_xref "SPD:22/22E04" ; GO "GO:0019005; SCF ubiquitin ligase complex
GO:0005789; endoplasmic reticulum membrane
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032443; regulation of ergosterol biosynthesis
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, no obvious phenotype; cv=phenotype; db_xref=PMID:17016471; date=20061115 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17016471; date=20061115 ||| term=F-box protein; residue=C172- C214; db_xref=PMID:17016471; date=20061115 ||| term=misc, degraded by an autocatalytic mechanism; db_xref=PMID:17016471; date=20061115 ||| term=gene expression, expression induced by hydrogen peroxide; db_xref=PMID:17016471; cv=gene_ex; date=20061115 ||| term=gene expression, transcriptionally regulated by Sty1; db_xref=PMID:17016471; cv=gene_ex; date=20061115 ||| term=gene expression, transcriptionally regulated by Pap1; db_xref=PMID:17016471; cv=gene_ex; date=20061115 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "pof14" ; product "F-box protein Pof14" ;
chromosome1 GeneDB CDS 2245786 2247081 . + . mRNA SPAC13D6.01 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2247229 2247942 . - . mRNA SPAC13D6.02c ; Alias "byr3" ; ID "SPAC13D6.02c" ; db_xref "SPD:05/05E01" ; systematic_id "SPAC13D6.02c" ; primary_name "byr3" ; gene "byr3 ||| SPAC13D6.02c" ; note "mRNA from AU007532" ;
chromosome1 GeneDB CDS_parts 2247943 2248482 . - . mRNA SPAC13D6.02c ; systematic_id "SPAC13D6.02c" ; colour "2" ; gene "byr3 ||| SPAC13D6.02c" ; Alias "byr3" ; db_xref "SPD:05/05E01" ; GO "GO:0000747; conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=orthologous to S. cerevisiae YNL255C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=human CNBP and ZCCHC13 ortholog; date=20100208 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20101011" ; primary_name "byr3" ; product "zinc finger protein Byr3" ;
chromosome1 GeneDB CDS 2247943 2248482 . - . mRNA SPAC13D6.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2248483 2248535 . - . mRNA SPAC13D6.02c ; Alias "byr3" ; ID "SPAC13D6.02c" ; systematic_id "SPAC13D6.02c" ; primary_name "byr3" ; gene "byr3 ||| SPAC13D6.02c" ; note "mRNA from AU006594" ;
chromosome1 GeneDB misc_RNA 2248603 2249009 . + . misc_RNA SPNCRNA.189 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.189" ; synonym "SPNG413" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB tRNA 2249180 2249250 . - . tRNA SPATRNAGLY.02 ; systematic_id "SPATRNAGLY.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033454; GCC codon-amino acid adaptor activity" ; gene "SPATRNAGLY.02" ; product "tRNA Glycine" ; note "tRNA Gly anticodon GCC, Cove score 72.94" ;
chromosome1 GeneDB 3'-UTR 2250008 2250371 . - . mRNA SPAC13D6.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13D6.03c" ; systematic_id "SPAC13D6.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2250372 2251107 . - . mRNA SPAC13D6.03c ; systematic_id "SPAC13D6.03c" ; colour "7" ; gene "SPAC13D6.03c ||| trm9" ; Alias "trm9" ; db_xref "SPD:08/08H09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016300; tRNA (uracil) methyltransferase activity
GO:0030488; tRNA methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "trm9" ; product "tRNA (uridine) methyltransferase Trm9 (predicted)" ; EC_number "2.1.1.-" ;
chromosome1 GeneDB CDS 2250372 2250977 . - . mRNA SPAC13D6.03c ; colour "7" ;
chromosome1 GeneDB CDS 2251027 2251107 . - . mRNA SPAC13D6.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 2250978 2250996 . - . misc_feature unknown_1920 ; colour "2" ; note "splice branch and acceptor sequence, ctaatcagtcatttt gtag" ;
chromosome1 GeneDB misc_feature 2251021 2251026 . - . misc_feature unknown_1921 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 2251106 2251161 . - . mRNA SPAC13D6.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13D6.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2251491 2251499 . - . mRNA SPAC13D6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13D6.04c" ; systematic_id "SPAC13D6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2251500 2253189 . - . mRNA SPAC13D6.04c ; systematic_id "SPAC13D6.04c" ; colour "2" ; gene "btb3 ||| SPAC13D6.04c" ; Alias "btb3" ; db_xref "SPD:35/35C06" ; GO "GO:0005634; nucleus
GO:0000151; ubiquitin ligase complex
GO:0005515; protein binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BTB/POZ domain; date=19700101 ||| term=orthologous to S. cerevisiae YIL001W; date=19700101 ||| term=modification, ubiquitinated; db_xref=PMID:14527422; cv=pt_mod; date=19700101 ||| term=ankyrin repeat protein; date=19700101 ||| term=human ABTB1 ortholog; db_xref=PMID:18429817; date=20080620 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "btb3" ; product "substrate adaptor for cullin 3 ubiquitin ligase Btb3" ;
chromosome1 GeneDB CDS 2251500 2252770 . - . mRNA SPAC13D6.04c ; colour "2" ;
chromosome1 GeneDB CDS 2252821 2252912 . - . mRNA SPAC13D6.04c ; colour "2" ;
chromosome1 GeneDB CDS 2252981 2253189 . - . mRNA SPAC13D6.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 2252771 2252782 . - . misc_feature unknown_1922 ; colour "2" ; note "splice branch and acceptor sequence, ctcacgcttaag" ;
chromosome1 GeneDB misc_feature 2252815 2252820 . - . misc_feature unknown_1923 ; colour "2" ; note "splice donor sequence, gtatgc" ;
chromosome1 GeneDB misc_feature 2252913 2252929 . - . misc_feature unknown_1924 ; colour "2" ; note "splice branch and acceptor sequence, ctaaattcaaaatccag" ;
chromosome1 GeneDB misc_feature 2252975 2252980 . - . misc_feature unknown_1925 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB 5'-UTR 2253188 2253362 . - . mRNA SPAC13D6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13D6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2253286 2253521 . + . misc_feature unknown_1926 ; note "nominal overlap with cosmid SPAC4G9 and cosmid SPAC18D6" ;
chromosome1 GeneDB 5'-UTR 2253416 2253467 . + . mRNA SPAC13D6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13D6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2253468 2254172 . + . mRNA SPAC13D6.05 ; systematic_id "SPAC13D6.05" ; colour "2" ; gene "alp11 ||| SPAC4G9.01 ||| SPAC13D6.05" ; Alias "alp11" ; db_xref "SPD:08/08C09" ; synonym "SPAC4G9.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL148C; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0006457; alpha-tubulin folding
GO:0007023; post-chaperonin tubulin folding pathway
GO:0043014; alpha-tubulin binding
GO:0005515; protein binding
GO:0000226; microtubule cytoskeleton organization" ; primary_name "alp11" ; product "tubulin specific chaperone cofactor B" ;
chromosome1 GeneDB CDS 2253468 2254172 . + . mRNA SPAC13D6.05 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2254173 2254296 . + . mRNA SPAC13D6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13D6.05" ; systematic_id "SPAC13D6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2254462 2254587 . + . mRNA SPAC4G9.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2254588 2255568 . + . mRNA SPAC4G9.02 ; systematic_id "SPAC4G9.02" ; colour "7" ; gene "SPAC4G9.02 ||| rnh201" ; Alias "rnh201" ; db_xref "SPD:14/14B04" ; GO "GO:0005634; nucleus
GO:0032299; ribonuclease H2 complex
GO:0004523; ribonuclease H activity
GO:0043137; DNA replication, removal of RNA primer
GO:0006261; DNA replication" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL072W; date=19700101 ||| term=disease associated, Aicardi- Goutieres syndrome; date=20080529 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091123 ||| term=disease associated, leukodystrophy; date=20091123" ; primary_name "rnh201" ; product "ribonuclease H2 complex subunit Rnh201 (predicted)" ; EC_number "3.1.26.4" ;
chromosome1 GeneDB CDS 2254588 2255568 . + . mRNA SPAC4G9.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2255569 2255670 . + . mRNA SPAC4G9.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.02" ; systematic_id "SPAC4G9.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2255781 2256856 . - . mRNA SPAC4G9.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.04c" ; systematic_id "SPAC4G9.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2255892 2255934 . + . mRNA SPAC4G9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2255935 2256597 . + . mRNA SPAC4G9.03 ; systematic_id "SPAC4G9.03" ; colour "2" ; gene "adk1 ||| SPAC4G9.03" ; Alias "adk1" ; db_xref "SPD:42/42G09" ; GO "GO:0004017; adenylate kinase activity
GO:0006172; ADP biosynthesis
GO:0005758; mitochondrial intermembrane space
GO:0005737; cytoplasm
GO:0005524; ATP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR226W and YER170W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "adk1" ; product "adenylate kinase Adk1" ; EC_number "2.7.4.3" ;
chromosome1 GeneDB CDS 2255935 2256597 . + . mRNA SPAC4G9.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2256598 2256662 . + . mRNA SPAC4G9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.03" ; systematic_id "SPAC4G9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2256857 2258821 . - . mRNA SPAC4G9.04c ; db_xref "SPD:37/37B04" ; systematic_id "SPAC4G9.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR228C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005849; mRNA cleavage factor complex
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation
GO:0006369; transcription termination from RNA polymerase II promoter" ; gene "SPAC4G9.04c" ; product "cleavage and polyadenylation specificity factor (predicted)" ;
chromosome1 GeneDB CDS 2256857 2258623 . - . mRNA SPAC4G9.04c ; colour "7" ;
chromosome1 GeneDB CDS 2258672 2258821 . - . mRNA SPAC4G9.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 2258624 2258640 . - . misc_feature unknown_1927 ; colour "2" ; note "splice branch and acceptor sequence, ctaactcttatttac ag" ;
chromosome1 GeneDB misc_feature 2258666 2258671 . - . misc_feature unknown_1928 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB 5'-UTR 2258820 2259193 . - . mRNA SPAC4G9.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2259943 2261801 . + . mRNA SPAC4G9.05 ; systematic_id "SPAC4G9.05" ; colour "7" ; gene "SPAC4G9.05 ||| mpf1" ; Alias "mpf1" ; db_xref "SPD:26/26C03" ; GO "GO:0003729; mRNA binding
GO:0005737; cytoplasm
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060420 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YLL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mpf1" ; product "meiotic PUF family protein 1 (predicted)" ;
chromosome1 GeneDB CDS 2259943 2260707 . + . mRNA SPAC4G9.05 ; colour "7" ;
chromosome1 GeneDB CDS 2260779 2261312 . + . mRNA SPAC4G9.05 ; colour "7" ;
chromosome1 GeneDB CDS 2261355 2261801 . + . mRNA SPAC4G9.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 2260708 2260713 . + . misc_feature unknown_1929 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 2260760 2260778 . + . misc_feature unknown_1930 ; colour "2" ; note "splice branch and acceptor sequence, ctaatgattcttttt ttag" ;
chromosome1 GeneDB misc_feature 2261313 2261318 . + . misc_feature unknown_1931 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB misc_feature 2261340 2261354 . + . misc_feature unknown_1932 ; colour "2" ; note "splice branch and acceptor sequence, ttaacaaatcaatta g" ;
chromosome1 GeneDB CDS_parts 2261963 2262415 . - . mRNA SPAC4G9.06c ; systematic_id "SPAC4G9.06c" ; colour "7" ; gene "SPAC4G9.06c ||| chz1" ; Alias "chz1" ; db_xref "SPD:04/04A02" ; GO "GO:0005678; chromatin assembly complex
GO:0005634; nucleus
GO:0042393; histone binding
GO:0006338; chromatin remodeling
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER030W; date=20070814 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "chz1" ; product "histone chaperone Chz1 (predicted)" ;
chromosome1 GeneDB CDS 2261963 2262129 . - . mRNA SPAC4G9.06c ; colour "7" ;
chromosome1 GeneDB CDS 2262195 2262340 . - . mRNA SPAC4G9.06c ; colour "7" ;
chromosome1 GeneDB CDS 2262387 2262415 . - . mRNA SPAC4G9.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 2262130 2262148 . - . misc_feature unknown_1933 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttgacgtatt gtag" ;
chromosome1 GeneDB misc_feature 2262189 2262194 . - . misc_feature unknown_1934 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB misc_feature 2262341 2262353 . - . misc_feature unknown_1935 ; colour "2" ; note "splice branch and acceptor sequence, ctaataagaatag" ;
chromosome1 GeneDB misc_feature 2262381 2262386 . - . misc_feature unknown_1936 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 2262414 2262436 . - . mRNA SPAC4G9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2263667 2265208 . + . mRNA SPAC4G9.07 ; systematic_id "SPAC4G9.07" ; colour "12" ; gene "SPAC4G9.07 ||| mug133" ; Alias "mug133" ; obsolete_name "B8647-3" ; db_xref "SPD:44/44H10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; primary_name "mug133" ; product "S. pombe specific UPF0300 family protein 2" ;
chromosome1 GeneDB CDS 2263667 2265208 . + . mRNA SPAC4G9.07 ; colour "12" ;
chromosome1 GeneDB misc_RNA 2265688 2265845 . - . misc_RNA SPNCRNA.507 ; systematic_id "SPNCRNA.507" ; controlled_curation "term=warning, new gene; db_xref=PMID:18641648; date=20100426" ; product "non-coding RNA (predicted)" ; note "transfrag P" ;
chromosome1 GeneDB CDS_parts 2266025 2269522 . - . mRNA SPAC4G9.08c ; systematic_id "SPAC4G9.08c" ; colour "2" ; gene "rpc2 ||| SPAC4G9.08c" ; Alias "rpc2" ; db_xref "SPD:48/48D03" ; GO "GO:0006383; transcription from RNA polymerase III promoter
GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR207C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpc2" ; product "DNA-directed RNA polymerase III complex subunit Rpc2" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB CDS 2266025 2269522 . - . mRNA SPAC4G9.08c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2269521 2269531 . - . mRNA SPAC4G9.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2269908 2270018 . - . mRNA SPAC4G9.09c ; Alias "arg11" ; ID "SPAC4G9.09c" ; db_xref "SPD:47/47A09" ; systematic_id "SPAC4G9.09c" ; primary_name "arg11" ; gene "arg11 ||| SPAC4G9.09c" ; note "mRNA from AU011644" ;
chromosome1 GeneDB CDS_parts 2270019 2272676 . - . mRNA SPAC4G9.09c ; systematic_id "SPAC4G9.09c" ; colour "2" ; gene "arg11 ||| SPAC4G9.09c" ; Alias "arg11" ; db_xref "KEGG:MAP00220; ||| SPD:47/47A09" ; GO "GO:0006526; arginine biosynthesis
GO:0003942; N-acetyl-gamma-glutamyl-phosphate reductase activity
GO:0003991; acetylglutamate kinase activity
GO:0006592; ornithine biosynthesis
GO:0005759; mitochondrial matrix" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER069W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arg11" ; product "N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase" ; EC_number "2.7.2.8 ||| 1.2.1.38" ;
chromosome1 GeneDB CDS 2270019 2272676 . - . mRNA SPAC4G9.09c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2272675 2272722 . - . mRNA SPAC4G9.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2273823 2274011 . + . mRNA SPAC4G9.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2274012 2274995 . + . mRNA SPAC4G9.10 ; systematic_id "SPAC4G9.10" ; colour "2" ; gene "arg3 ||| SPAC4G9.10" ; Alias "arg3" ; db_xref "SPD:14/14C03" ; GO "GO:0042450; arginine biosynthetic process via ornithine
GO:0006591; ornithine metabolism
GO:0005739; mitochondrion
GO:0004585; ornithine carbamoyltransferase activity
GO:0000050; urea cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arg3" ; product "ornithine carbamoyltransferase Arg3" ; EC_number "2.1.3.3" ;
chromosome1 GeneDB CDS 2274012 2274995 . + . mRNA SPAC4G9.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2274996 2275417 . + . mRNA SPAC4G9.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.10" ; systematic_id "SPAC4G9.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2275525 2275577 . - . mRNA SPAC4G9.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.11c" ; systematic_id "SPAC4G9.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2275578 2276249 . - . mRNA SPAC4G9.11c ; systematic_id "SPAC4G9.11c" ; colour "2" ; gene "cmb1 ||| SPAC4G9.11c" ; Alias "cmb1" ; db_xref "SPD:42/42H05" ; GO "GO:0006281; DNA repair
GO:0003684; damaged DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=orthologous to S. cerevisiae YKL032C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cmb1" ; product "cytosine-mismatch binding protein 1" ;
chromosome1 GeneDB CDS 2275578 2276249 . - . mRNA SPAC4G9.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2276900 2277198 . + . mRNA SPAC4G9.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2277199 2277780 . + . mRNA SPAC4G9.12 ; db_xref "SPD:06/06C09" ; systematic_id "SPAC4G9.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=subunit composition, monomeric; cv=subunit_composition; db_xref=PMID:7840612; date=20061122 ||| term=orthologous to S. cerevisiae YDR248C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "2" ; GO "GO:0019521; D-gluconate metabolism
GO:0046316; gluconokinase activity
GO:0005524; ATP binding" ; gene "SPAC4G9.12" ; product "gluconokinase" ;
chromosome1 GeneDB CDS 2277199 2277780 . + . mRNA SPAC4G9.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2277781 2278002 . + . mRNA SPAC4G9.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.12" ; systematic_id "SPAC4G9.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2278221 2278241 . - . mRNA SPAC4G9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.13c" ; systematic_id "SPAC4G9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2278242 2279234 . - . mRNA SPAC4G9.13c ; systematic_id "SPAC4G9.13c" ; colour "2" ; gene "vps26 ||| pep8 ||| SPAC4G9.13c" ; Alias "vps26" ; db_xref "SPD:14/14D12" ; synonym "pep8" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL053W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030904; retromer complex
GO:0030904; retromer complex
GO:0006886; intracellular protein transport
GO:0030437; sporulation (sensu Fungi)
GO:0016787; hydrolase activity
GO:0042147; retrograde transport, endosome to Golgi
GO:0005768; endosome
GO:0005768; endosome" ; primary_name "vps26" ; product "retromer complex subunit Vps26" ;
chromosome1 GeneDB CDS 2278242 2278994 . - . mRNA SPAC4G9.13c ; colour "2" ;
chromosome1 GeneDB CDS 2279091 2279234 . - . mRNA SPAC4G9.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 2278995 2279014 . - . misc_feature unknown_1937 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgacggtatag" ;
chromosome1 GeneDB misc_feature 2279085 2279090 . - . misc_feature unknown_1938 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 2279233 2279377 . - . mRNA SPAC4G9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2280365 2280422 . + . mRNA SPAC4G9.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2280423 2281454 . + . mRNA SPAC4G9.14 ; db_xref "SPD:15/15F02" ; systematic_id "SPAC4G9.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR251W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006067; ethanol metabolism
GO:0000002; mitochondrial genome maintenance" ; gene "SPAC4G9.14" ; product "mitochondrial Mvp17/PMP22 family protein 2 (predicted)" ;
chromosome1 GeneDB CDS 2280423 2280442 . + . mRNA SPAC4G9.14 ; colour "7" ;
chromosome1 GeneDB CDS 2280492 2280766 . + . mRNA SPAC4G9.14 ; colour "7" ;
chromosome1 GeneDB CDS 2280860 2280882 . + . mRNA SPAC4G9.14 ; colour "7" ;
chromosome1 GeneDB CDS 2280992 2281120 . + . mRNA SPAC4G9.14 ; colour "7" ;
chromosome1 GeneDB CDS 2281168 2281239 . + . mRNA SPAC4G9.14 ; colour "7" ;
chromosome1 GeneDB CDS 2281308 2281454 . + . mRNA SPAC4G9.14 ; colour "7" ;
chromosome1 GeneDB misc_feature 2280443 2280448 . + . misc_feature unknown_1939 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 2280478 2280491 . + . misc_feature unknown_1940 ; colour "2" ; note "splice branch and acceptor sequence, cttacgataattag" ;
chromosome1 GeneDB misc_feature 2280767 2280772 . + . misc_feature unknown_1941 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB misc_feature 2280843 2280859 . + . misc_feature unknown_1942 ; colour "2" ; note "splice branch and acceptor sequence, ctaacataattgaac ag" ;
chromosome1 GeneDB misc_feature 2280883 2280888 . + . misc_feature unknown_1943 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB misc_feature 2280977 2280991 . + . misc_feature unknown_1944 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgcgaatctag" ;
chromosome1 GeneDB misc_feature 2281121 2281126 . + . misc_feature unknown_1945 ; colour "2" ; note "splice donor sequence, gtacta" ;
chromosome1 GeneDB misc_feature 2281154 2281167 . + . misc_feature unknown_1946 ; colour "2" ; note "splice branch and acceptor sequence, ttaacagtttttag" ;
chromosome1 GeneDB misc_feature 2281240 2281245 . + . misc_feature unknown_1947 ; colour "2" ; note "splice donor sequence, gtaagg" ;
chromosome1 GeneDB misc_feature 2281295 2281307 . + . misc_feature unknown_1948 ; colour "2" ; note "splice branch and acceptor sequence, ctaacatatttag" ;
chromosome1 GeneDB 3'-UTR 2281455 2281798 . + . mRNA SPAC4G9.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.14" ; systematic_id "SPAC4G9.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2282230 2283364 . + . mRNA SPAC4G9.15 ; db_xref "SPD:17/17H02" ; systematic_id "SPAC4G9.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "7" ; GO "GO:0030497; fatty acid elongation
GO:0045703; ketoreductase activity
GO:0005783; endoplasmic reticulum" ; gene "SPAC4G9.15" ; product "ketoreductase (predicted)" ;
chromosome1 GeneDB CDS 2282230 2282242 . + . mRNA SPAC4G9.15 ; colour "7" ;
chromosome1 GeneDB CDS 2282303 2282433 . + . mRNA SPAC4G9.15 ; colour "7" ;
chromosome1 GeneDB CDS 2282483 2283364 . + . mRNA SPAC4G9.15 ; colour "7" ;
chromosome1 GeneDB misc_feature 2282243 2282248 . + . misc_feature unknown_1949 ; colour "2" ; note "splice donor sequence, gtatata" ;
chromosome1 GeneDB misc_feature 2282288 2282302 . + . misc_feature unknown_1950 ; colour "2" ; note "splice branch and acceptor sequence, ctaatagacttttag" ;
chromosome1 GeneDB misc_feature 2282434 2282439 . + . misc_feature unknown_1951 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB misc_feature 2282470 2282482 . + . misc_feature unknown_1952 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttctttag" ;
chromosome1 GeneDB 3'-UTR 2283365 2283556 . + . mRNA SPAC4G9.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.15" ; systematic_id "SPAC4G9.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2283556 2283636 . - . mRNA SPAC4G9.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.16c" ; systematic_id "SPAC4G9.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2283637 2284209 . - . mRNA SPAC4G9.16c ; systematic_id "SPAC4G9.16c" ; colour "2" ; gene "rpl901 ||| rpl9-1 ||| SPAC4G9.16c" ; Alias "rpl901" ; db_xref "SPD:06/06B01" ; synonym "rpl9-1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL147C and YNL067W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl901" ; product "60S ribosomal protein L9" ;
chromosome1 GeneDB CDS 2283637 2284209 . - . mRNA SPAC4G9.16c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2284208 2284216 . - . mRNA SPAC4G9.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 2284269 2284276 . - . promoter unknown_1953 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB promoter 2284289 2284298 . - . promoter unknown_1954 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB 3'-UTR 2284490 2284502 . - . mRNA SPAC4G9.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.17c" ; systematic_id "SPAC4G9.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2284503 2285793 . - . mRNA SPAC4G9.17c ; systematic_id "SPAC4G9.17c" ; colour "7" ; gene "SPAC4G9.17c ||| mrps5" ; Alias "mrps5" ; db_xref "SPD:22/22D05" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR251W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrps5" ; product "mitochondrial ribosomal protein subunit S5 (predicted)" ;
chromosome1 GeneDB CDS 2284503 2284717 . - . mRNA SPAC4G9.17c ; colour "7" ;
chromosome1 GeneDB CDS 2284845 2285793 . - . mRNA SPAC4G9.17c ; colour "7" ;
chromosome1 GeneDB misc_feature 2284718 2284731 . - . misc_feature unknown_1955 ; colour "2" ; note "splice branch and acceptor sequence, ctaactaaatatag" ;
chromosome1 GeneDB intron 2284718 2284844 . - . intron SPAC4G9.17c ; db_xref "SPD:22/22D05" ; systematic_id "SPAC4G9.17c" ; gene "SPAC4G9.17c ||| mrps5" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2284839 2284844 . - . misc_feature unknown_1956 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB 5'-UTR 2285792 2286030 . - . mRNA SPAC4G9.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2286318 2286554 . - . misc_feature unknown_1957 ; note "was SPAC4G9.18c, len:78 but now thought to be not coding" ;
chromosome1 GeneDB 5'-UTR 2287186 2287376 . + . mRNA SPAC4G9.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2287377 2288189 . + . mRNA SPAC4G9.19 ; db_xref "SPD:10/10D07" ; systematic_id "SPAC4G9.19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding
GO:0030433; ER-associated protein catabolic process" ; gene "SPAC4G9.19" ; product "DNAJ domain protein DNAJB family (predicted)" ;
chromosome1 GeneDB CDS 2287377 2288189 . + . mRNA SPAC4G9.19 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2288395 2288688 . - . mRNA SPAC4G9.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4G9.20c" ; systematic_id "SPAC4G9.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2288689 2289697 . - . mRNA SPAC4G9.20c ; db_xref "SPD:14/14H11" ; systematic_id "SPAC4G9.20c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YPR058W and YBR104W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0005215; transporter activity" ; gene "SPAC4G9.20c" ; product "mitochondrial carrier with solute carrier repeats (predicted)" ; note "may use upstream Met with alternative intron" ;
chromosome1 GeneDB CDS 2288689 2289546 . - . mRNA SPAC4G9.20c ; colour "7" ;
chromosome1 GeneDB CDS 2289647 2289697 . - . mRNA SPAC4G9.20c ; colour "7" ;
chromosome1 GeneDB misc_feature 2289547 2289559 . - . misc_feature unknown_1958 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttgtttag" ;
chromosome1 GeneDB misc_feature 2289547 2289947 . - . misc_feature unknown_1959 ; note "alteRNAtive intron prediction to use upstream initiator Met" ;
chromosome1 GeneDB misc_feature 2289641 2289646 . - . misc_feature unknown_1960 ; colour "2" ; note "splice donor sequence, gtatct" ;
chromosome1 GeneDB 5'-UTR 2289696 2289990 . - . mRNA SPAC4G9.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4G9.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2291674 2292604 . + . misc_RNA SPNCRNA.531 ; Alias "SPAC4G9.22" ; systematic_id "SPNCRNA.531" ; synonym "SPNGAF9 ||| SPAC4G9.22" ; primary_name "SPAC4G9.22" ; gene "SPAC4G9.22" ; product "non-coding RNA (predicted)" ; note "possibly protein coding, longest ORF with met is 94 aa; date=20071008" ;
chromosome1 GeneDB 3'-UTR 2292742 2292800 . - . mRNA SPAC13G7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G7.01c" ; systematic_id "SPAC13G7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2292801 2295116 . - . mRNA SPAC13G7.01c ; systematic_id "SPAC13G7.01c" ; colour "7" ; gene "erg7 ||| SPAC4G9.21c ||| SPAC13G7.01c" ; Alias "erg7" ; db_xref "SPD:38/38C04" ; synonym "SPAC4G9.21c" ; GO "GO:0006696; ergosterol biosynthesis
GO:0000250; lanosterol synthase activity
GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR072W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "erg7" ; product "lanosterol synthase Erg7 (predicted)" ; EC_number "5.4.99.7" ; reserved_name "erg7" ;
chromosome1 GeneDB CDS 2292801 2293088 . - . mRNA SPAC13G7.01c ; colour "7" ;
chromosome1 GeneDB CDS 2293137 2293754 . - . mRNA SPAC13G7.01c ; colour "7" ;
chromosome1 GeneDB CDS 2293811 2294893 . - . mRNA SPAC13G7.01c ; colour "7" ;
chromosome1 GeneDB CDS 2294940 2295116 . - . mRNA SPAC13G7.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 2293089 2293104 . - . misc_feature unknown_1961 ; colour "2" ; note "splice branch and acceptor sequence, ctaacggatgattta g" ;
chromosome1 GeneDB intron 2293089 2293136 . - . intron SPAC13G7.01c ; Alias "erg7" ; db_xref "SPD:38/38C04" ; systematic_id "SPAC13G7.01c" ; primary_name "erg7" ; gene "erg7 ||| SPAC4G9.21c ||| SPAC13G7.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2293131 2293136 . - . misc_feature unknown_1962 ; colour "2" ; note "splice donor sequence, gtatgg" ;
chromosome1 GeneDB misc_feature 2293755 2293769 . - . misc_feature unknown_1963 ; colour "2" ; note "splice branch and acceptor sequence, ctaactttaatttag" ;
chromosome1 GeneDB intron 2293755 2293810 . - . intron SPAC13G7.01c ; Alias "erg7" ; db_xref "SPD:38/38C04" ; systematic_id "SPAC13G7.01c" ; primary_name "erg7" ; gene "erg7 ||| SPAC4G9.21c ||| SPAC13G7.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2293805 2293810 . - . misc_feature unknown_1964 ; colour "2" ; note "splice donor sequence, gtgcgc (cag|gtgcgc donor sequ ence supported by homology)" ;
chromosome1 GeneDB misc_feature 2294145 2294200 . + . misc_feature unknown_1965 ; note "nominal overlap with cosmid SPAC4G9 and cosmid SPAC13G7" ;
chromosome1 GeneDB intron 2294894 2294939 . - . intron SPAC13G7.01c ; Alias "erg7" ; db_xref "SPD:38/38C04" ; systematic_id "SPAC13G7.01c" ; primary_name "erg7" ; gene "erg7 ||| SPAC4G9.21c ||| SPAC13G7.01c" ; note "confirmed intron" ;
chromosome1 GeneDB 5'-UTR 2295117 2295220 . - . mRNA SPAC13G7.01c ; Alias "erg7" ; ID "SPAC13G7.01c" ; systematic_id "SPAC13G7.01c" ; primary_name "erg7" ; gene "erg7 ||| SPAC4G9.21c ||| SPAC13G7.01c" ; note "mRNA from SP41368" ;
chromosome1 GeneDB 3'-UTR 2295580 2295818 . - . mRNA SPAC13G7.02c ; Alias "ssa1" ; ID "SPAC13G7.02c" ; db_xref "SPD:40/40G05" ; systematic_id "SPAC13G7.02c" ; primary_name "ssa1" ; gene "ssa1 ||| SPAC13G7.02c" ; note "mRNA from AU010458" ;
chromosome1 GeneDB CDS_parts 2295819 2297753 . - . mRNA SPAC13G7.02c ; systematic_id "SPAC13G7.02c" ; colour "7" ; gene "ssa1 ||| SPAC13G7.02c" ; Alias "ssa1" ; db_xref "SPD:40/40G05" ; GO "GO:0016887; ATPase activity
GO:0006457; protein folding
GO:0042026; protein refolding
GO:0051082; unfolded protein binding
GO:0033554; cellular response to stress
GO:0006412; translation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL005C and YBL075C and YER103W and YLL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "ssa1" ; product "heat shock protein Ssa1 (predicted)" ; reserved_name "ssa1" ;
chromosome1 GeneDB CDS 2295819 2297753 . - . mRNA SPAC13G7.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2297752 2297965 . - . mRNA SPAC13G7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2298902 2298978 . + . mRNA SPAC13G7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2298979 2299924 . + . mRNA SPAC13G7.03 ; systematic_id "SPAC13G7.03" ; colour "7" ; gene "SPAC13G7.03" ; Alias "upf3" ; db_xref "SPD:13/13C07" ; GO "GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR072W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "upf3" ; product "up-frameshift suppressor 3 family protein (predicted)" ;
chromosome1 GeneDB CDS 2298979 2299133 . + . mRNA SPAC13G7.03 ; colour "7" ;
chromosome1 GeneDB CDS 2299193 2299299 . + . mRNA SPAC13G7.03 ; colour "7" ;
chromosome1 GeneDB CDS 2299350 2299924 . + . mRNA SPAC13G7.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 2299134 2299139 . + . misc_feature unknown_1966 ; colour "2" ; note "splice donor sequence, gtattt" ;
chromosome1 GeneDB misc_feature 2299173 2299192 . + . misc_feature unknown_1967 ; colour "2" ; note "splice donor sequence, ctaatatcgtgcctttgtag" ;
chromosome1 GeneDB misc_feature 2299300 2299305 . + . misc_feature unknown_1968 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 2299330 2299349 . + . misc_feature unknown_1969 ; colour "2" ; note "splice branch and acceptor sequence, ttaactcaaacatgc attag" ;
chromosome1 GeneDB 3'-UTR 2299925 2300068 . + . mRNA SPAC13G7.03 ; ID "SPAC13G7.03" ; db_xref "SPD:13/13C07" ; systematic_id "SPAC13G7.03" ; gene "SPAC13G7.03" ; note "mRNA from AU009632" ;
chromosome1 GeneDB 3'-UTR 2300331 2300521 . - . mRNA SPAC13G7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G7.04c" ; systematic_id "SPAC13G7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2300522 2302792 . - . mRNA SPAC13G7.04c ; systematic_id "SPAC13G7.04c" ; colour "2" ; gene "mac1 ||| SPAC13G7.04c" ; Alias "mac1" ; db_xref "SPD:28/28B08" ; GO "GO:0000935; barrier septum
GO:0000920; cell separation during cytokinesis
GO:0031520; plasma membrane of cell tip" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL019W and YFR012W and YMR063W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mac1" ; product "membrane anchored protein Mac1" ;
chromosome1 GeneDB CDS 2300522 2302792 . - . mRNA SPAC13G7.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2302791 2303356 . - . mRNA SPAC13G7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2303557 2304248 . + . misc_RNA SPNCRNA.190 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.190" ; synonym "SPNG418" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2305172 2305344 . + . mRNA SPAC13G7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2305345 2306958 . + . mRNA SPAC13G7.05 ; systematic_id "SPAC13G7.05" ; colour "7" ; gene "SPAC13G7.05" ; Alias "are1" ; db_xref "SPD:45/45D03" ; GO "GO:0005783; endoplasmic reticulum
GO:0034737; ergosterol O-acyltransferase activity
GO:0006696; ergosterol metabolic process
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR048W and YNR019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "are1" ; product "acyl-coA-sterol acyltransferase Are1 (predicted)" ; reserved_name "are1" ; EC_number "2.3.1.26" ;
chromosome1 GeneDB CDS 2305345 2306958 . + . mRNA SPAC13G7.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2306959 2307263 . + . mRNA SPAC13G7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G7.05" ; systematic_id "SPAC13G7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2307538 2307728 . + . mRNA SPAC13G7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2307729 2308529 . + . mRNA SPAC13G7.06 ; systematic_id "SPAC13G7.06" ; colour "2" ; gene "met16 ||| SPAC13G7.06" ; Alias "met16" ; db_xref "SPD:43/43C07" ; GO "GO:0000103; sulfate assimilation
GO:0004604; phosphoadenylyl-sulfate reductase (thioredoxin) activity
GO:0009086; methionine biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR167C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; primary_name "met16" ; product "phosphoadenosine phosphosulfate reductase" ; EC_number "1.8.4.8" ;
chromosome1 GeneDB CDS 2307729 2308529 . + . mRNA SPAC13G7.06 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2308530 2308745 . + . mRNA SPAC13G7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G7.06" ; systematic_id "SPAC13G7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2309026 2309958 . + . mRNA SPAC13G7.07 ; systematic_id "SPAC13G7.07" ; colour "2" ; gene "arb2 ||| SPAC13G7.07" ; Alias "arb2" ; db_xref "SPD:07/07B02" ; GO "GO:0033167; ARC complex
GO:0030702; chromatin silencing at centromere
GO:0031047; RNA-mediated gene silencing
GO:0033168; RNA interference, conversion of ds siRNA to ss siRNA
GO:0035197; siRNA binding
GO:0030148; chromatin silencing by small RNA" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070323 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:17310250; date=20072303" ; primary_name "arb2" ; product "argonaute binding protein 2" ;
chromosome1 GeneDB CDS 2309026 2309212 . + . mRNA SPAC13G7.07 ; colour "2" ;
chromosome1 GeneDB CDS 2309259 2309569 . + . mRNA SPAC13G7.07 ; colour "2" ;
chromosome1 GeneDB CDS 2309610 2309667 . + . mRNA SPAC13G7.07 ; colour "2" ;
chromosome1 GeneDB CDS 2309714 2309958 . + . mRNA SPAC13G7.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 2309213 2309218 . + . misc_feature unknown_1970 ; colour "2" ; note "splice donor sequence, gtaggg" ;
chromosome1 GeneDB intron 2309213 2309258 . + . intron SPAC13G7.07 ; Alias "arb2" ; db_xref "PMID:17310250 ||| SPD:07/07B02" ; systematic_id "SPAC13G7.07" ; primary_name "arb2" ; gene "arb2 ||| SPAC13G7.07" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 2309238 2309258 . + . misc_feature unknown_1971 ; colour "2" ; note "splice donor sequence, ttaacttgcaattgaaattag" ;
chromosome1 GeneDB intron 2309570 2309609 . + . intron SPAC13G7.07 ; Alias "arb2" ; db_xref "PMID:17310250 ||| SPD:07/07B02" ; systematic_id "SPAC13G7.07" ; primary_name "arb2" ; gene "arb2 ||| SPAC13G7.07" ; note "confirmed" ;
chromosome1 GeneDB intron 2309668 2309713 . + . intron SPAC13G7.07 ; Alias "arb2" ; db_xref "PMID:17310250 ||| SPD:07/07B02" ; systematic_id "SPAC13G7.07" ; primary_name "arb2" ; gene "arb2 ||| SPAC13G7.07" ; note "confirmed" ;
chromosome1 GeneDB 3'-UTR 2310288 2310385 . - . mRNA SPAC13G7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G7.08c" ; systematic_id "SPAC13G7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2310386 2311891 . - . mRNA SPAC13G7.08c ; systematic_id "SPAC13G7.08c" ; colour "2" ; gene "crb3 ||| SPAC13G7.08c" ; Alias "crb3" ; db_xref "SPD:24/24D08" ; GO "GO:0005634; nucleus
GO:0006364; 35S primary transcript processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=EMBL:AB008572; date=20060221 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL182C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "crb3" ; product "WD repeat protein Crb3" ;
chromosome1 GeneDB CDS 2310386 2310517 . - . mRNA SPAC13G7.08c ; colour "2" ;
chromosome1 GeneDB CDS 2310561 2311571 . - . mRNA SPAC13G7.08c ; colour "2" ;
chromosome1 GeneDB CDS 2311694 2311891 . - . mRNA SPAC13G7.08c ; colour "2" ;
chromosome1 GeneDB misc_feature 2310518 2310533 . - . misc_feature unknown_1972 ; colour "2" ; note "splice branch and acceptor sequence, ctaacataattttta g" ;
chromosome1 GeneDB misc_feature 2310555 2310560 . - . misc_feature unknown_1973 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 2311572 2311586 . - . misc_feature unknown_1974 ; colour "2" ; note "splice branch and acceptor sequence, ctaatacaagtgtag" ;
chromosome1 GeneDB misc_feature 2311688 2311693 . - . misc_feature unknown_1975 ; colour "2" ; note "splice donor sequence, gtaggt" ;
chromosome1 GeneDB 3'-UTR 2312375 2312617 . - . mRNA SPAC13G7.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G7.09c" ; systematic_id "SPAC13G7.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2312618 2313025 . - . mRNA SPAC13G7.09c ; db_xref "SPD:42/42A12" ; systematic_id "SPAC13G7.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100126 ||| term=species distribution, conserved in Fungi only; date=20100126 ||| term=species distribution, conserved in Eukaryotes; date=20100126 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100126" ; colour "10" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 2312618 2313025 . - . mRNA SPAC13G7.09c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2313024 2313090 . - . mRNA SPAC13G7.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G7.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2313641 2313745 . + . mRNA SPAC13G7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2313746 2315063 . + . mRNA SPAC13G7.10 ; systematic_id "SPAC13G7.10" ; colour "7" ; gene "SPAC13G7.10 ||| mug152" ; Alias "mug152" ; db_xref "SPD:22/22H12" ; synonym "tay1" ; GO "GO:0000781; chromosome, telomeric region
GO:0000783; nuclear telomere cap complex
GO:0003691; double-stranded telomeric DNA binding
GO:0032205; negative regulation of telomere maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, expressed during meiosis; db_xref=PMID:16303567; date=20101008 ||| term=name description, Meiotically Upregulated Gene; db_xref=PMID:16303567; date=20101008 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20101008 ||| term=human TERF1 and TERF2 ortholog; qualifier=predicted; db_xref=PMID:20923774; date=20101008 ||| term=name description, Telomere- associated in Yarrowia lipolytica; db_xref=PMID:20923774; date=20101008 ||| term=modification, ubiquitinated; qualifier=predicted; date=20101008" ; primary_name "mug152" ; product "Myb family telomere binding protein (predicted)" ;
chromosome1 GeneDB CDS 2313746 2313961 . + . mRNA SPAC13G7.10 ; colour "7" ;
chromosome1 GeneDB CDS 2314049 2314131 . + . mRNA SPAC13G7.10 ; colour "7" ;
chromosome1 GeneDB CDS 2314190 2315063 . + . mRNA SPAC13G7.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 2313962 2313967 . + . misc_feature unknown_1976 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 2314035 2314048 . + . misc_feature unknown_1977 ; colour "2" ; note "splice branch and acceptor sequence, ctaaccgtctctag" ;
chromosome1 GeneDB misc_feature 2314132 2314137 . + . misc_feature unknown_1978 ; colour "2" ; note "splice donor sequence, gtatgc" ;
chromosome1 GeneDB misc_feature 2314172 2314189 . + . misc_feature unknown_1979 ; colour "2" ; note "splice branch and acceptor sequence, ctaatgggtatatgc aag" ;
chromosome1 GeneDB CDS_parts 2315187 2316133 . + . mRNA SPAC13G7.11 ; db_xref "SPD:13/13C08" ; systematic_id "SPAC13G7.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR185C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0009060; aerobic respiration
GO:0007007; inner mitochondrial membrane organization and biogenesis
GO:0032979; protein insertion into mitochondrial membrane from inner side" ; gene "SPAC13G7.11" ; product "mitochondrial respiratory complex assembly protein (predicted)" ;
chromosome1 GeneDB CDS 2315187 2315349 . + . mRNA SPAC13G7.11 ; colour "7" ;
chromosome1 GeneDB CDS 2315386 2315599 . + . mRNA SPAC13G7.11 ; colour "7" ;
chromosome1 GeneDB CDS 2315701 2316133 . + . mRNA SPAC13G7.11 ; colour "7" ;
chromosome1 GeneDB intron 2315350 2315385 . + . intron SPAC13G7.11 ; db_xref "SPD:13/13C08" ; systematic_id "SPAC13G7.11" ; gene "SPAC13G7.11" ; note "confirmed intron" ;
chromosome1 GeneDB 3'-UTR 2315567 2316466 . - . mRNA SPAC13G7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G7.12c" ; systematic_id "SPAC13G7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2315600 2315605 . + . misc_feature unknown_1980 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB intron 2315600 2315700 . + . intron SPAC13G7.11 ; db_xref "SPD:13/13C08" ; systematic_id "SPAC13G7.11" ; gene "SPAC13G7.11" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2315682 2315700 . + . misc_feature unknown_1981 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttagacttgt taag" ;
chromosome1 GeneDB 3'-UTR 2316134 2316282 . + . mRNA SPAC13G7.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC13G7.11" ; systematic_id "SPAC13G7.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2316467 2317837 . - . mRNA SPAC13G7.12c ; db_xref "SPD:21/21C01" ; systematic_id "SPAC13G7.12c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR133W and YDR147W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006656; phosphatidylcholine biosynthesis
GO:0004103; choline kinase activity
GO:0005829; cytosol" ; gene "SPAC13G7.12c" ; product "choline kinase (predicted)" ; EC_number "2.7.1.32" ;
chromosome1 GeneDB CDS 2316467 2317837 . - . mRNA SPAC13G7.12c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2317836 2318315 . - . mRNA SPAC13G7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC13G7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2318638 2320239 . - . mRNA SPAC13G7.13c ; systematic_id "SPAC13G7.13c" ; colour "2" ; gene "msa1 ||| SPAC6C3.01c ||| SPAC13G7.13c" ; Alias "msa1" ; db_xref "SPD:25/25F08" ; synonym "SPAC6C3.01c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL024W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0031138; negative regulation of conjugation with cellular fusion" ; primary_name "msa1" ; product "RNA-binding protein Msa1" ;
chromosome1 GeneDB CDS 2318638 2320239 . - . mRNA SPAC13G7.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 2319058 2319153 . + . misc_feature unknown_1982 ; note "nominal overlap with cosmid SPAC6C3 and cosmid SPAC13G7" ;
chromosome1 GeneDB misc_feature 2320240 2324480 . + . misc_feature unknown_1983 ; note "low complexity gene free region" ;
chromosome1 GeneDB misc_feature 2320774 2322915 . + . misc_feature unknown_1984 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG421-22 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 2324481 2324644 . - . mRNA SPAC6C3.02c ; ID "SPAC6C3.02c" ; db_xref "SPD:05/05B05" ; systematic_id "SPAC6C3.02c" ; gene "SPAC6C3.02c" ; note "mRNA from AU009658" ;
chromosome1 GeneDB CDS_parts 2324645 2325163 . - . mRNA SPAC6C3.02c ; db_xref "SPD:05/05B05" ; systematic_id "SPAC6C3.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CHCH domain; date=19700101 ||| term=orthologous to S. cerevisiae YMR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005758; mitochondrial intermembrane space" ; gene "SPAC6C3.02c" ; product "mitochondrial CHCH domain protein (predicted)" ;
chromosome1 GeneDB CDS 2324645 2325163 . - . mRNA SPAC6C3.02c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2325164 2325288 . - . mRNA SPAC6C3.02c ; ID "SPAC6C3.02c" ; systematic_id "SPAC6C3.02c" ; gene "SPAC6C3.02c" ; note "mRNA from AU012281" ;
chromosome1 GeneDB CDS_parts 2326332 2326634 . - . mRNA SPAC6C3.03c ; db_xref "SPD:01/01D09" ; systematic_id "SPAC6C3.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC6C3.03c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2326332 2326634 . - . mRNA SPAC6C3.03c ; colour "8" ;
chromosome1 GeneDB misc_RNA 2327258 2327629 . - . misc_RNA SPNCRNA.57 ; Alias "prl57" ; db_xref "EMBL:AB084869 ||| PMID:12597277" ; systematic_id "SPNCRNA.57" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl57" ; gene "prl57 ||| SPNCRNA.57" ; product "non-coding RNA, poly(A)-bearing RNA (predicted)" ;
chromosome1 GeneDB 5'-UTR 2328657 2328674 . + . mRNA SPAC6C3.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6C3.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2328675 2330096 . + . mRNA SPAC6C3.04 ; systematic_id "SPAC6C3.04" ; colour "2" ; gene "cit1 ||| SPAC6C3.04" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00630; ||| SPD:21/21H01" ; Alias "cit1" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006101; citrate metabolism
GO:0004108; citrate (Si)-synthase activity
GO:0044275; cellular carbohydrate catabolic process
GO:0005759; mitochondrial matrix
GO:0006537; glutamate biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR001C and YCR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=catalytic activity, 2.6 umil/min/mg; cv=cat_act; db_xref=PMID:17072883; date=20100126 ||| term=experimental tools, substrate for chaperone activity assay; cv=ex_tools; db_xref=PMID:17072883; date=20100126" ; primary_name "cit1" ; product "citrate synthase Cit1" ; EC_number "2.3.3.1" ;
chromosome1 GeneDB CDS 2328675 2330096 . + . mRNA SPAC6C3.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2330097 2330289 . + . mRNA SPAC6C3.04 ; Alias "cit1" ; ID "SPAC6C3.04" ; db_xref "SPD:21/21H01" ; systematic_id "SPAC6C3.04" ; primary_name "cit1" ; gene "cit1 ||| SPAC6C3.04" ; note "mRNA from AU009905" ;
chromosome1 GeneDB snoRNA 2330437 2330647 . - . snoRNA SPSNORNA.50 ; Alias "snR98" ; db_xref "EMBL:AJ632017 ||| PMID:15716270" ; systematic_id "SPSNORNA.50" ; gene "SPSNORNA.50" ; primary_name "snR98" ; product "small nucleolar RNA snR98" ;
chromosome1 GeneDB CDS_parts 2331155 2331964 . + . mRNA SPAC6C3.05 ; db_xref "SPD:10/10C10" ; systematic_id "SPAC6C3.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC6C3.05" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2331155 2331964 . + . mRNA SPAC6C3.05 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 2331628 2332119 . - . mRNA SPAC6C3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6C3.06c" ; systematic_id "SPAC6C3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2332120 2335362 . - . mRNA SPAC6C3.06c ; db_xref "SPD:39/39B06" ; systematic_id "SPAC6C3.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL048W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; colour "7" ; GO "GO:0005388; calcium-transporting ATPase activity
GO:0004012; phospholipid-translocating ATPase activity
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005789; endoplasmic reticulum membrane
GO:0070588; transmembrane calcium ion transport" ; gene "SPAC6C3.06c" ; product "P-type ATPase, calcium transporting (predicted)" ;
chromosome1 GeneDB CDS 2332120 2332256 . - . mRNA SPAC6C3.06c ; colour "7" ;
chromosome1 GeneDB CDS 2332306 2332385 . - . mRNA SPAC6C3.06c ; colour "7" ;
chromosome1 GeneDB CDS 2332437 2332563 . - . mRNA SPAC6C3.06c ; colour "7" ;
chromosome1 GeneDB CDS 2332605 2335362 . - . mRNA SPAC6C3.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 2332257 2332269 . - . misc_feature unknown_1985 ; colour "6" ; note "ctaatacatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2332300 2332305 . - . misc_feature unknown_1986 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2332386 2332398 . - . misc_feature unknown_1987 ; colour "6" ; note "ctaacgacgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2332431 2332436 . - . misc_feature unknown_1988 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2332564 2332576 . - . misc_feature unknown_1989 ; colour "6" ; note "cttacaaacatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2332599 2332604 . - . misc_feature unknown_1990 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2335361 2335475 . - . mRNA SPAC6C3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6C3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2336034 2337581 . + . mRNA SPAC6C3.07 ; systematic_id "SPAC6C3.07" ; colour "8" ; gene "SPAC6C3.07 ||| mug68" ; db_xref "SPD:25/25B02" ; Alias "mug68" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug68" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2336034 2337581 . + . mRNA SPAC6C3.07 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 2338172 2338174 . + . mRNA SPAC6C3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6C3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2338175 2339017 . + . mRNA SPAC6C3.08 ; db_xref "SPD:11/11A06" ; systematic_id "SPAC6C3.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR232W; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=disease associated, hepatoma; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human PSMD10 ortholog; date=20100203" ; colour "7" ; GO "GO:0005838; proteasome regulatory particle (sensu Eukaryota)
GO:0043161; proteasomal ubiquitin-dependent protein catabolism" ; gene "SPAC6C3.08" ; product "proteasome regulatory particle, gankyrin (predicted)" ;
chromosome1 GeneDB CDS 2338175 2338279 . + . mRNA SPAC6C3.08 ; colour "7" ;
chromosome1 GeneDB CDS 2338418 2339017 . + . mRNA SPAC6C3.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 2338280 2338285 . + . misc_feature unknown_1991 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2338398 2338417 . + . misc_feature unknown_1992 ; colour "6" ; note "ctaatcacaaatattgttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2339018 2339106 . + . mRNA SPAC6C3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6C3.08" ; systematic_id "SPAC6C3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2339836 2339883 . + . mRNA SPAC6C3.09 ; ID "SPAC6C3.09" ; systematic_id "SPAC6C3.09" ; gene "SPAC6C3.09" ; note "mRNA from AU009252" ;
chromosome1 GeneDB CDS_parts 2339884 2341141 . + . mRNA SPAC6C3.09 ; db_xref "SPD:20/20B04" ; systematic_id "SPAC6C3.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005655; nucleolar ribonuclease P complex
GO:0001682; tRNA 5'-leader removal
GO:0004526; ribonuclease P activity" ; gene "SPAC6C3.09" ; product "RNase P subunit (predicted)" ;
chromosome1 GeneDB CDS 2339884 2339976 . + . mRNA SPAC6C3.09 ; colour "7" ;
chromosome1 GeneDB CDS 2340021 2340168 . + . mRNA SPAC6C3.09 ; colour "7" ;
chromosome1 GeneDB CDS 2340219 2340275 . + . mRNA SPAC6C3.09 ; colour "7" ;
chromosome1 GeneDB CDS 2340392 2340950 . + . mRNA SPAC6C3.09 ; colour "7" ;
chromosome1 GeneDB CDS 2340991 2341141 . + . mRNA SPAC6C3.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 2339977 2339982 . + . misc_feature unknown_1993 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 2339977 2340024 . + . intron SPAC6C3.09 ; db_xref "SPD:20/20B04" ; systematic_id "SPAC6C3.09" ; gene "SPAC6C3.09" ; note "confirmed; probably a mis-splice variant?, as makes an out of frame product. Also uses 2nd AG when first would be preferred" ;
chromosome1 GeneDB misc_feature 2340004 2340020 . + . misc_feature unknown_1994 ; colour "6" ; note "ctaataataaaacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2340169 2340174 . + . misc_feature unknown_1995 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 2340169 2340218 . + . intron SPAC6C3.09 ; db_xref "SPD:20/20B04" ; systematic_id "SPAC6C3.09" ; gene "SPAC6C3.09" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2340201 2340218 . + . misc_feature unknown_1996 ; colour "6" ; note "ctaattttttcaatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2340276 2340281 . + . misc_feature unknown_1997 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB intron 2340276 2340391 . + . intron SPAC6C3.09 ; db_xref "SPD:20/20B04" ; systematic_id "SPAC6C3.09" ; gene "SPAC6C3.09" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2340377 2340391 . + . misc_feature unknown_1998 ; colour "6" ; note "cttacagttaataag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2340951 2340956 . + . misc_feature unknown_1999 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2340979 2340990 . + . misc_feature unknown_2000 ; colour "6" ; note "ctaacagtaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2341142 2341195 . + . mRNA SPAC6C3.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6C3.09" ; systematic_id "SPAC6C3.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2341251 2341345 . - . mRNA SPAC17G8.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G8.01c" ; systematic_id "SPAC17G8.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2341346 2343756 . - . mRNA SPAC17G8.01c ; systematic_id "SPAC17G8.01c" ; colour "7" ; gene "trl1 ||| SPAC6C3.10c ||| SPAC17G8.01c" ; note "overlaps and extends orf SPAC6C3.09c which has similar to tRNA ligase, no met initiation codon near 5' end in this frame and splicing uncertain" ; Alias "trl1" ; db_xref "SPD:52/52B07" ; synonym "SPAC6C3.10c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL087C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005637; nuclear inner membrane
GO:0003972; RNA ligase (ATP) activity
GO:0006388; tRNA splicing
GO:0004113; 2',3'-cyclic-nucleotide 3'- phosphodiesterase activity
GO:0051730; GTP-dependent polyribonucleotide 5'- hydroxyl-kinase activity" ; primary_name "trl1" ; product "tRNA ligase Trl1 (predicted)" ;
chromosome1 GeneDB CDS 2341346 2343706 . - . mRNA SPAC17G8.01c ; colour "7" ;
chromosome1 GeneDB CDS 2343754 2343756 . - . mRNA SPAC17G8.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 2343592 2343700 . + . misc_feature unknown_2001 ; note "nominal overlap with cosmid SPAC17G8 and cosmid SPAC6C3" ;
chromosome1 GeneDB 5'-UTR 2343755 2343947 . - . mRNA SPAC17G8.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G8.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2344552 2344814 . + . mRNA SPAC17G8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2344815 2345807 . + . mRNA SPAC17G8.02 ; db_xref "SPD:14/14E01" ; systematic_id "SPAC17G8.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR400W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0070635; nicotinamide riboside hydrolase activity
GO:0070636; nicotinic acid riboside hydrolase activity
GO:0050263; ribosylpyrimidine nucleosidase activity
GO:0045437; uridine nucleosidase activity
GO:0034356; NAD biosynthesis via nicotinamide riboside salvage pathway
GO:0019358; nicotinate nucleoside salvage
GO:0046135; pyrimidine nucleoside catabolic process
GO:0008655; pyrimidine salvage" ; gene "SPAC17G8.02" ; product "uridine ribohydrolase (predicted)" ;
chromosome1 GeneDB CDS 2344815 2345807 . + . mRNA SPAC17G8.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2345808 2345982 . + . mRNA SPAC17G8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G8.02" ; systematic_id "SPAC17G8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2346089 2346431 . - . mRNA SPAC17G8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G8.03c" ; systematic_id "SPAC17G8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2346432 2347031 . - . mRNA SPAC17G8.03c ; systematic_id "SPAC17G8.03c" ; colour "2" ; gene "dpb3 ||| SPAC17G8.03c" ; Alias "dpb3" ; db_xref "SPD:06/06F04" ; GO "GO:0005515; protein binding
GO:0006261; DNA replication
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0003887; epsilon DNA polymerase activity
GO:0008622; epsilon DNA polymerase complex
GO:0034613; cellular protein localization
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15388803; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:15388803; date=20100727 ||| term=phenotype, multinucleate; qualifier=deletion; db_xref=PMID:15388803; date=20100727 ||| term=histone fold; db_xref=PMID:15388803; date=19700101 ||| term=orthologous to S. cerevisiae YBR278W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human POLE4 ortholog; date=20091020 ||| term=species distribution, conserved in Archaea; date=20081109" ; primary_name "dpb3" ; product "DNA polymerase epsilon subunit Dpb3" ;
chromosome1 GeneDB CDS 2346432 2347031 . - . mRNA SPAC17G8.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2347030 2347246 . - . mRNA SPAC17G8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2347893 2348007 . + . mRNA SPAC17G8.15 ; db_xref "PMID:21270388" ; systematic_id "SPAC17G8.15" ;
chromosome1 GeneDB CDS_parts 2348008 2348331 . + . mRNA SPAC17G8.15 ; Alias "new1" ; systematic_id "SPAC17G8.15" ; colour "10" ; controlled_curation "term=conserved Fungi only; date=20090720 ||| term=conserved in Fungi; date=20090720 ||| term=conserved in Eukaryotes; date=20090720 ||| term=no apparent S. cerevisiae ortholog; date=20090720 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=phenotype, growth defect, slow growth; db_xref=PMID:21270388; date=20110131" ; primary_name "new1" ; gene "SPAC17G8.15" ; product "histone-like transcription factor and archael histone family protein" ;
chromosome1 GeneDB CDS 2348008 2348088 . + . mRNA SPAC17G8.15 ; colour "10" ;
chromosome1 GeneDB CDS 2348209 2348331 . + . mRNA SPAC17G8.15 ; colour "10" ;
chromosome1 GeneDB intron 2348089 2348208 . + . intron unknown_2002 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome1 GeneDB 3'-UTR 2348345 2348551 . - . mRNA SPAC17G8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G8.04c" ; systematic_id "SPAC17G8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2348552 2349270 . - . mRNA SPAC17G8.04c ; systematic_id "SPAC17G8.04c" ; colour "2" ; gene "arc15 ||| SPAC17G8.04c ||| arc5" ; Alias "arc5" ; db_xref "SPD:08/08E06" ; synonym "arc15" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; contractile ring
GO:0031097; medial ring
GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0000147; actin cortical patch assembly
GO:0006897; endocytosis" ; primary_name "arc5" ; product "ARP2/3 actin-organizing complex subunit Arc5" ;
chromosome1 GeneDB CDS 2348552 2348614 . - . mRNA SPAC17G8.04c ; colour "2" ;
chromosome1 GeneDB CDS 2348705 2348881 . - . mRNA SPAC17G8.04c ; colour "2" ;
chromosome1 GeneDB CDS 2349008 2349080 . - . mRNA SPAC17G8.04c ; colour "2" ;
chromosome1 GeneDB CDS 2349125 2349270 . - . mRNA SPAC17G8.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 2348615 2348631 . - . misc_feature unknown_2003 ; colour "2" ; note "splice branch and acceptor sequence, ctaatacggttttgt ag" ;
chromosome1 GeneDB misc_feature 2348699 2348704 . - . misc_feature unknown_2004 ; colour "2" ; note "splice donor sequence, gtaact" ;
chromosome1 GeneDB misc_feature 2348882 2348894 . - . misc_feature unknown_2005 ; colour "2" ; note "splice branch and acceptor sequence, ttaacttttttag" ;
chromosome1 GeneDB misc_feature 2349002 2349007 . - . misc_feature unknown_2006 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 2349081 2349093 . - . misc_feature unknown_2007 ; colour "2" ; note "splice branch and acceptor sequence, ttaattaaaatag" ;
chromosome1 GeneDB misc_feature 2349119 2349124 . - . misc_feature unknown_2008 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB 5'-UTR 2349271 2349747 . - . mRNA SPAC17G8.04c ; Alias "arc15" ; ID "SPAC17G8.04c" ; systematic_id "SPAC17G8.04c" ; primary_name "arc15" ; gene "arc15 ||| SPAC17G8.04c ||| arc5" ; note "mRNA from spc04609" ;
chromosome1 GeneDB CDS_parts 2350408 2351019 . + . mRNA SPAC17G8.05 ; systematic_id "SPAC17G8.05" ; colour "2" ; gene "SPAC17G8.05 ||| med20" ; Alias "med20" ; db_xref "SPD:42/42D11" ; GO "GO:0016592; mediator complex
GO:0005634; nucleus
GO:0016455; RNA polymerase II transcription mediator activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0006366; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:18310102; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR041C; db_xref=PMID:15175151; date=20070706 ||| term=phenotype, septation defects; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=phenotype, colony morphology, flocculation; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TRFP ortholog; date=20110113" ; primary_name "med20" ; product "mediator complex subunit Med20" ;
chromosome1 GeneDB CDS 2350408 2350471 . + . mRNA SPAC17G8.05 ; colour "2" ;
chromosome1 GeneDB CDS 2350541 2351019 . + . mRNA SPAC17G8.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 2350472 2350477 . + . misc_feature unknown_2009 ; colour "2" ; note "splice donor sequence, gtaagc" ;
chromosome1 GeneDB misc_feature 2350524 2350540 . + . misc_feature unknown_2010 ; colour "2" ; note "splice branch and acceptor sequence, ctaactttgaatttc ag" ;
chromosome1 GeneDB 3'-UTR 2351150 2351370 . - . mRNA SPAC17G8.06c ; ID "SPAC17G8.06c" ; db_xref "SPD:36/36D06" ; systematic_id "SPAC17G8.06c" ; gene "SPAC17G8.06c" ; note "mRNA from SPD254" ;
chromosome1 GeneDB CDS_parts 2351371 2353167 . - . mRNA SPAC17G8.06c ; db_xref "SPD:36/36D06" ; systematic_id "SPAC17G8.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR016C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004160; dihydroxy-acid dehydratase activity
GO:0005739; mitochondrion
GO:0009097; isoleucine biosynthesis
GO:0009099; valine biosynthesis
GO:0006551; leucine metabolism" ; gene "SPAC17G8.06c" ; product "dihydroxy-acid dehydratase (predicted)" ; EC_number "4.2.1.9" ;
chromosome1 GeneDB CDS 2351371 2353167 . - . mRNA SPAC17G8.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2353166 2353352 . - . mRNA SPAC17G8.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G8.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2354122 2354400 . + . mRNA SPAC17G8.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G8.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2354401 2355054 . + . mRNA SPAC17G8.07 ; systematic_id "SPAC17G8.07" ; colour "2" ; gene "SPAC17G8.07 ||| yaf9" ; Alias "yaf9" ; db_xref "SPD:07/07E08" ; GO "GO:0035267; NuA4 histone acetyltransferase complex
GO:0000812; Swr1 complex
GO:0006281; DNA repair
GO:0006342; chromatin silencing
GO:0043486; histone exchange
GO:0016573; histone acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL107W; date=19700101 ||| term=human YEATS4 and MLLT3 ortholog; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=histone fold; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230" ; primary_name "yaf9" ; product "YEATS family histone acetyltransferase subunit Yaf9" ;
chromosome1 GeneDB CDS 2354401 2355054 . + . mRNA SPAC17G8.07 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2355055 2355110 . + . mRNA SPAC17G8.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G8.07" ; systematic_id "SPAC17G8.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2355278 2355347 . - . mRNA SPAC17G8.08c ; ID "SPAC17G8.08c" ; db_xref "SPD:17/17H03" ; systematic_id "SPAC17G8.08c" ; gene "SPAC17G8.08c" ; note "mRNA from AU010436" ;
chromosome1 GeneDB CDS_parts 2355348 2356482 . - . mRNA SPAC17G8.08c ; db_xref "SPD:17/17H03" ; systematic_id "SPAC17G8.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR187W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC17G8.08c" ; product "human TMEM165 homolog" ;
chromosome1 GeneDB CDS 2355348 2356154 . - . mRNA SPAC17G8.08c ; colour "10" ;
chromosome1 GeneDB CDS 2356426 2356482 . - . mRNA SPAC17G8.08c ; colour "10" ;
chromosome1 GeneDB misc_feature 2356155 2356169 . - . misc_feature unknown_2011 ; colour "2" ; note "splice branch and acceptor sequence, ctaacactactttag" ;
chromosome1 GeneDB misc_feature 2356420 2356425 . - . misc_feature unknown_2012 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 2356481 2356541 . - . mRNA SPAC17G8.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G8.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2357361 2357931 . + . mRNA SPAC17G8.09 ; systematic_id "SPAC17G8.09" ; colour "2" ; gene "shg1 ||| SPAC17G8.09" ; Alias "shg1" ; db_xref "SPD:06/06A10" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0016571; histone methylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=orthologous to S. cerevisiae YBR258C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "shg1" ; product "Set1C complex subunit Shg1" ;
chromosome1 GeneDB CDS 2357361 2357456 . + . mRNA SPAC17G8.09 ; colour "2" ;
chromosome1 GeneDB CDS 2357576 2357697 . + . mRNA SPAC17G8.09 ; colour "2" ;
chromosome1 GeneDB CDS 2357763 2357931 . + . mRNA SPAC17G8.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 2357469 2357474 . + . misc_feature unknown_2013 ; colour "2" ; note "splice donor sequence, gtaggg" ;
chromosome1 GeneDB misc_feature 2357561 2357575 . + . misc_feature unknown_2014 ; colour "2" ; note "splice branch and acceptor sequence, ctaacatcgcctcag" ;
chromosome1 GeneDB misc_feature 2357698 2357703 . + . misc_feature unknown_2015 ; colour "2" ; note "splice donor sequence, gtaagc" ;
chromosome1 GeneDB misc_feature 2357751 2357762 . + . misc_feature unknown_2016 ; colour "2" ; note "splice branch and acceptor sequence, ctaacccataag" ;
chromosome1 GeneDB 3'-UTR 2358137 2358569 . - . mRNA SPAC17G8.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G8.10c" ; systematic_id "SPAC17G8.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2358570 2359373 . - . mRNA SPAC17G8.10c ; systematic_id "SPAC17G8.10c" ; colour "2" ; gene "dma1 ||| SPAC17G8.10c" ; Alias "dma1" ; db_xref "SPD:10/10B10" ; GO "GO:0007094; mitotic spindle checkpoint
; spindle pole body
GO:0031030; negative regulation of septation initiation signaling
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YNL116W and YHR115C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "dma1" ; product "mitotic spindle checkpoint protein Dma1" ;
chromosome1 GeneDB CDS 2358570 2359373 . - . mRNA SPAC17G8.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2359374 2359871 . - . mRNA SPAC17G8.10c ; Alias "dma1" ; ID "SPAC17G8.10c" ; systematic_id "SPAC17G8.10c" ; primary_name "dma1" ; gene "dma1 ||| SPAC17G8.10c" ; note "mRNA from AU014075" ;
chromosome1 GeneDB 3'-UTR 2360392 2360442 . - . mRNA SPAC17G8.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G8.11c" ; systematic_id "SPAC17G8.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2360443 2361513 . - . mRNA SPAC17G8.11c ; systematic_id "SPAC17G8.11c" ; colour "2" ; gene "SPAC17G8.11c" ; Alias "imt3" ; db_xref "SPD:16/16E03" ; GO "GO:0000030; mannosyltransferase activity
GO:0051999; mannose inositol phosphoceramide biosynthetic process
GO:0033106; cis-Golgi network membrane
GO:0032588; trans-Golgi network membrane
GO:0006897; endocytosis
GO:0007038; endocytosed protein transport to vacuole" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR161W and YPL057C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; cv=phenotype; db_xref=PMID:20388730; date=20100622 ||| term=name description, Ipc Mannosyl- Transferase homologue; db_xref=PMID:20388730; date=20100622 ||| term=phenotype, cell morphology, pear shaped; db_xref=PMID:20388730; date=20100622 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Fungi only; date=20100827" ; primary_name "imt3" ; product "mannosyltransferase Imt3" ;
chromosome1 GeneDB CDS 2360443 2361513 . - . mRNA SPAC17G8.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2361512 2361877 . - . mRNA SPAC17G8.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G8.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2362396 2362641 . + . misc_RNA SPNCRNA.77 ; systematic_id "SPNCRNA.77" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.77" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB misc_RNA 2362411 2362747 . + . misc_RNA SPNCRNA.59 ; Alias "prl59" ; db_xref "EMBL:AB084871 ||| PMID:12597277" ; systematic_id "SPNCRNA.59" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl59" ; gene "prl59 ||| SPNCRNA.59" ; product "non-coding RNA, poly(A)-bearing RNA (predicted)" ;
chromosome1 GeneDB misc_RNA 2362643 2362753 . + . misc_RNA SPNCRNA.78 ; systematic_id "SPNCRNA.78" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.78" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB CDS_parts 2363568 2365394 . + . mRNA SPAC17G8.12 ; db_xref "SPD:36/36F09" ; systematic_id "SPAC17G8.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC17G8.12" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2363568 2365394 . + . mRNA SPAC17G8.12 ; colour "8" ;
chromosome1 GeneDB CDS_parts 2365447 2366833 . - . mRNA SPAC17G8.13c ; systematic_id "SPAC17G8.13c" ; colour "2" ; gene "reserved_name_mst2 ||| SPAC17G8.13c ||| mst2" ; note "functional studies suggest that Mst2 is functionally more similar to S. cerevisiae Sas2 than Sas3" ; Alias "mst2" ; db_xref "SPD:21/21E01" ; GO "GO:0000123; histone acetyltransferase complex
GO:0000790; nuclear chromatin
GO:0004402; histone acetyltransferase activity
GO:0016573; histone acetylation
GO:0031939; negative regulation of chromatin silencing at telomere
GO:0031939; negative regulation of chromatin silencing at telomere
GO:0031939; negative regulation of chromatin silencing at telomere
GO:0031939; negative regulation of chromatin silencing at telomere
GO:0051445; regulation of progression through meiotic cell cycle
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060920 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16199868; date=20061127 ||| term=orthologous to S. cerevisiae YBL052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human MYST1 and MYST2 and MYST3 and MYST4 ortholog; date=20100208" ; primary_name "mst2" ; product "histone acetyltransferase Mst2" ;
chromosome1 GeneDB CDS 2365447 2366127 . - . mRNA SPAC17G8.13c ; colour "2" ;
chromosome1 GeneDB CDS 2366175 2366264 . - . mRNA SPAC17G8.13c ; colour "2" ;
chromosome1 GeneDB CDS 2366381 2366833 . - . mRNA SPAC17G8.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 2366128 2366144 . - . misc_feature unknown_2017 ; colour "2" ; note "splice branch and acceptor sequence, ttgatgtttttcctt ag" ;
chromosome1 GeneDB intron 2366128 2366174 . - . intron SPAC17G8.13c ; Alias "reserved_name_mst2" ; db_xref "SPD:21/21E01" ; systematic_id "SPAC17G8.13c" ; primary_name "reserved_name_mst2" ; gene "reserved_name_mst2 ||| SPAC17G8.13c ||| mst2" ; note "confirmed intron by BLAST homology" ;
chromosome1 GeneDB misc_feature 2366169 2366174 . - . misc_feature unknown_2018 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 2366265 2366277 . - . misc_feature unknown_2019 ; colour "2" ; note "splice branch and acceptor sequence, ctaacataatcag" ;
chromosome1 GeneDB intron 2366265 2366380 . - . intron SPAC17G8.13c ; Alias "reserved_name_mst2" ; db_xref "SPD:21/21E01" ; systematic_id "SPAC17G8.13c" ; primary_name "reserved_name_mst2" ; gene "reserved_name_mst2 ||| SPAC17G8.13c ||| mst2" ; note "confirmed intron from BLAST homology" ;
chromosome1 GeneDB misc_feature 2366375 2366380 . - . misc_feature unknown_2020 ; colour "2" ; note "splice donor sequence, gtaaac" ;
chromosome1 GeneDB 5'-UTR 2366832 2366882 . - . mRNA SPAC17G8.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G8.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2367322 2367404 . - . mRNA SPAC17G8.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G8.14c" ; systematic_id "SPAC17G8.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2367405 2370556 . - . mRNA SPAC17G8.14c ; systematic_id "SPAC17G8.14c" ; colour "2" ; gene "pck1 ||| SPAC22H10.01c ||| SPAC17G8.14c" ; Alias "pck1" ; db_xref "SPD:30/30B06" ; synonym "SPAC22H10.01c" ; GO "GO:0032878; regulation of establishment and/or maintenance of cell polarity
GO:0004697; protein kinase C activity
GO:0006468; protein amino acid phosphorylation
GO:0005515; protein binding
GO:0005515; protein binding
GO:0090334; regulation of cell wall 1,3-beta- glucan biosynthetic process
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:8491190; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C1 domain; date=19700101 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YBL105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "pck1" ; product "protein kinase C (PKC)-like Pck1" ; EC_number "2.7.1.-" ;
chromosome1 GeneDB CDS 2367405 2367496 . - . mRNA SPAC17G8.14c ; colour "2" ;
chromosome1 GeneDB CDS 2367542 2367725 . - . mRNA SPAC17G8.14c ; colour "2" ;
chromosome1 GeneDB CDS 2367767 2367955 . - . mRNA SPAC17G8.14c ; colour "2" ;
chromosome1 GeneDB CDS 2368000 2368201 . - . mRNA SPAC17G8.14c ; colour "2" ;
chromosome1 GeneDB CDS 2368257 2370556 . - . mRNA SPAC17G8.14c ; colour "2" ;
chromosome1 GeneDB misc_feature 2367497 2367511 . - . misc_feature unknown_2021 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgatcgattag" ;
chromosome1 GeneDB misc_feature 2367536 2367541 . - . misc_feature unknown_2022 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB misc_feature 2367726 2367741 . - . misc_feature unknown_2023 ; colour "2" ; note "splice branch and acceptor sequence, ctaattcaaaaaata g" ;
chromosome1 GeneDB misc_feature 2367761 2367766 . - . misc_feature unknown_2024 ; colour "2" ; note "splice donor sequence, gtatgc" ;
chromosome1 GeneDB misc_feature 2367956 2367968 . - . misc_feature unknown_2025 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgaaaatag" ;
chromosome1 GeneDB misc_feature 2367994 2367999 . - . misc_feature unknown_2026 ; colour "2" ; note "splice donor sequence, gtaagg" ;
chromosome1 GeneDB misc_feature 2368202 2368213 . - . misc_feature unknown_2027 ; colour "2" ; note "splice branch and acceptor sequence, ttaaccccatag" ;
chromosome1 GeneDB misc_feature 2368251 2368256 . - . misc_feature unknown_2028 ; colour "2" ; note "splice donor sequence, gtagta" ;
chromosome1 GeneDB misc_feature 2370144 2370280 . + . misc_feature unknown_2029 ; note "nominal overlap with cosmid SPAC22H10 and cosmid SPAC17G8" ;
chromosome1 GeneDB 5'-UTR 2370555 2370567 . - . mRNA SPAC17G8.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G8.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2370710 2371361 . + . misc_RNA SPNCRNA.192 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.192" ; synonym "SPNG431" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 2371692 2372372 . + . mRNA SPAC22H10.02 ; db_xref "SPD:07/07H04" ; systematic_id "SPAC22H10.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa B21O8.090; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC22H10.02" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 2371692 2371809 . + . mRNA SPAC22H10.02 ; colour "10" ;
chromosome1 GeneDB CDS 2371877 2371965 . + . mRNA SPAC22H10.02 ; colour "10" ;
chromosome1 GeneDB CDS 2372103 2372372 . + . mRNA SPAC22H10.02 ; colour "10" ;
chromosome1 GeneDB misc_feature 2371810 2371815 . + . misc_feature unknown_2030 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2371861 2371876 . + . misc_feature unknown_2031 ; colour "6" ; note "ctaactgttgaactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2371966 2371971 . + . misc_feature unknown_2032 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2372085 2372102 . + . misc_feature unknown_2033 ; colour "6" ; note "ctaactttattggtttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2372373 2372768 . + . mRNA SPAC22H10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22H10.02" ; systematic_id "SPAC22H10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2373052 2373143 . - . mRNA SPAC22H10.03c ; Alias "kap114" ; ID "SPAC22H10.03c" ; db_xref "SPD:48/48B05" ; systematic_id "SPAC22H10.03c" ; primary_name "kap114" ; gene "kap114 ||| SPAC22H10.03c" ; note "mRNA from AU010623" ;
chromosome1 GeneDB CDS_parts 2373144 2376385 . - . mRNA SPAC22H10.03c ; systematic_id "SPAC22H10.03c" ; colour "2" ; gene "kap114 ||| SPAC22H10.03c" ; Alias "kap114" ; db_xref "SPD:48/48B05" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0005634; nucleus
GO:0008565; protein transporter activity
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YGL241W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "kap114" ; product "karyopherin Kap14" ;
chromosome1 GeneDB CDS 2373144 2373263 . - . mRNA SPAC22H10.03c ; colour "2" ;
chromosome1 GeneDB CDS 2373303 2373355 . - . mRNA SPAC22H10.03c ; colour "2" ;
chromosome1 GeneDB CDS 2373413 2373583 . - . mRNA SPAC22H10.03c ; colour "2" ;
chromosome1 GeneDB CDS 2373626 2373744 . - . mRNA SPAC22H10.03c ; colour "2" ;
chromosome1 GeneDB CDS 2373792 2373961 . - . mRNA SPAC22H10.03c ; colour "2" ;
chromosome1 GeneDB CDS 2374002 2376223 . - . mRNA SPAC22H10.03c ; colour "2" ;
chromosome1 GeneDB CDS 2376280 2376385 . - . mRNA SPAC22H10.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 2373264 2373276 . - . misc_feature unknown_2034 ; colour "6" ; note "ctaacatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2373297 2373302 . - . misc_feature unknown_2035 ; colour "6" ; note "gtgggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2373356 2373373 . - . misc_feature unknown_2036 ; colour "6" ; note "ttaacgaattgtccaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2373407 2373412 . - . misc_feature unknown_2037 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2373584 2373597 . - . misc_feature unknown_2038 ; colour "6" ; note "ttaaccaaaactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2373620 2373625 . - . misc_feature unknown_2039 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2373745 2373756 . - . misc_feature unknown_2040 ; colour "6" ; note "ctaacctgaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2373786 2373791 . - . misc_feature unknown_2041 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2373962 2373976 . - . misc_feature unknown_2042 ; colour "6" ; note "ctgacttttatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2373996 2374001 . - . misc_feature unknown_2043 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2376224 2376242 . - . misc_feature unknown_2044 ; colour "6" ; note "ctaactatcttttacgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2376274 2376279 . - . misc_feature unknown_2045 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2376384 2376506 . - . mRNA SPAC22H10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22H10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2377056 2377354 . + . mRNA SPAC22H10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22H10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2377355 2378456 . + . mRNA SPAC22H10.04 ; db_xref "SPD:17/17C09" ; systematic_id "SPAC22H10.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006470; protein amino acid dephosphorylation
GO:0004722; protein phosphatase type 2A activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC22H10.04" ; product "protein phosphatase type 2A (predicted)" ; EC_number "3.1.3.16" ;
chromosome1 GeneDB CDS 2377355 2377515 . + . mRNA SPAC22H10.04 ; colour "7" ;
chromosome1 GeneDB CDS 2377582 2377652 . + . mRNA SPAC22H10.04 ; colour "7" ;
chromosome1 GeneDB CDS 2377765 2378456 . + . mRNA SPAC22H10.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 2377516 2377521 . + . misc_feature unknown_2046 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2377566 2377581 . + . misc_feature unknown_2047 ; colour "6" ; note "cttacaaagtatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2377653 2377658 . + . misc_feature unknown_2048 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2377751 2377764 . + . misc_feature unknown_2049 ; colour "6" ; note "ctaactatttgaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2378457 2378596 . + . mRNA SPAC22H10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22H10.04" ; systematic_id "SPAC22H10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2378706 2378727 . - . mRNA SPAC22H10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22H10.05c" ; systematic_id "SPAC22H10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2378728 2380243 . - . mRNA SPAC22H10.05c ; db_xref "SPD:24/24F01" ; systematic_id "SPAC22H10.05c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR250C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human HEAB ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; GO "GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation
GO:0005849; mRNA cleavage factor complex
GO:0031124; mRNA 3'-end processing" ; gene "SPAC22H10.05c" ; product "mRNA cleavage and polyadenylation specificity factor complex subunit (predicted)" ;
chromosome1 GeneDB CDS 2378728 2380026 . - . mRNA SPAC22H10.05c ; colour "7" ;
chromosome1 GeneDB CDS 2380172 2380243 . - . mRNA SPAC22H10.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 2380027 2380039 . - . misc_feature unknown_2050 ; colour "6" ; note "ctaacatgtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2380166 2380171 . - . misc_feature unknown_2051 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2380242 2380300 . - . mRNA SPAC22H10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22H10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2381320 2381601 . - . mRNA SPAC22H10.06c ; db_xref "SPD:01/01C09" ; systematic_id "SPAC22H10.06c" ; colour "6" ; gene "SPAC22H10.06c" ; product "dubious" ;
chromosome1 GeneDB CDS 2381320 2381601 . - . mRNA SPAC22H10.06c ; colour "6" ;
chromosome1 GeneDB 5'-UTR 2381690 2381729 . + . mRNA SPAC22H10.13 ; Alias "zym1" ; ID "SPAC22H10.13" ; systematic_id "SPAC22H10.13" ; primary_name "zym1" ; gene "zym1 ||| SPAC22H10.13" ; note "mRNA from AU009741" ;
chromosome1 GeneDB CDS_parts 2381730 2381882 . + . mRNA SPAC22H10.13 ; systematic_id "SPAC22H10.13" ; colour "2" ; gene "zym1 ||| SPAC22H10.13" ; Alias "zym1" ; db_xref "SPD:01/01A04" ; GO "GO:0008270; zinc ion binding
GO:0006882; zinc ion homeostasis
GO:0006878; copper ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "zym1" ; product "metallothionein Zym1" ;
chromosome1 GeneDB CDS 2381730 2381882 . + . mRNA SPAC22H10.13 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2381883 2382200 . + . mRNA SPAC22H10.13 ; Alias "zym1" ; ID "SPAC22H10.13" ; db_xref "SPD:01/01A04" ; systematic_id "SPAC22H10.13" ; primary_name "zym1" ; gene "zym1 ||| SPAC22H10.13" ; note "mRNA from AU009741" ;
chromosome1 GeneDB 5'-UTR 2382778 2383171 . + . mRNA SPAC22H10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22H10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2383172 2384835 . + . mRNA SPAC22H10.07 ; systematic_id "SPAC22H10.07" ; colour "2" ; gene "scd2 ||| ral3 ||| SPAC22H10.07" ; Alias "scd2" ; db_xref "SPD:34/34H02" ; synonym "ral3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, stubby cells; qualifier=deletion; cv=phenotype; db_xref=PMID:7923372; date=20090217 ||| term=orthologous to S. cerevisiae YBR200W; date=19700101 ||| term=PX domain protein; date=19700101 ||| term=pathway, Ras1-Scd; cv=pathway; date=20080718 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0035091; phosphoinositide binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032878; regulation of establishment and/or maintenance of cell polarity
GO:0031137; regulation of conjugation with cellular fusion
GO:0032488; Cdc42 protein signal tansduction
GO:0071521; Cdc42 GTPase complex" ; primary_name "scd2" ; product "scaffold protein Scd2" ;
chromosome1 GeneDB CDS 2383172 2383180 . + . mRNA SPAC22H10.07 ; colour "2" ;
chromosome1 GeneDB CDS 2383234 2384835 . + . mRNA SPAC22H10.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 2383172 2383485 . + . misc_feature SPAC22H10.07 ; db_xref "PO:protein_interaction_region ||| PMID:12409291" ; gene "SPAC22H10.07" ; label "CB1" ; note "with GTP-Cdc42p" ;
chromosome1 GeneDB misc_feature 2383181 2383186 . + . misc_feature unknown_2052 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2383220 2383233 . + . misc_feature unknown_2053 ; colour "6" ; note "ttaaccatctctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2383552 2384022 . + . misc_feature SPAC22H10.07 ; db_xref "PO:protein_interaction_region ||| PMID:12409291" ; gene "SPAC22H10.07" ; label "CB2" ; note "with GTP-Cdc42p" ;
chromosome1 GeneDB 3'-UTR 2384836 2385153 . + . mRNA SPAC22H10.07 ; Alias "scd2" ; ID "SPAC22H10.07" ; db_xref "SPD:34/34H02" ; systematic_id "SPAC22H10.07" ; primary_name "scd2" ; gene "scd2 ||| ral3 ||| SPAC22H10.07" ; note "mRNA from AU007206" ;
chromosome1 GeneDB 5'-UTR 2385749 2385906 . + . mRNA SPAC22H10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22H10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2385907 2387441 . + . mRNA SPAC22H10.08 ; db_xref "SPD:24/24H05" ; systematic_id "SPAC22H10.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101" ; colour "10" ; gene "SPAC22H10.08" ; product "DUF2009 protein" ;
chromosome1 GeneDB CDS 2385907 2387265 . + . mRNA SPAC22H10.08 ; colour "10" ;
chromosome1 GeneDB CDS 2387322 2387441 . + . mRNA SPAC22H10.08 ; colour "10" ;
chromosome1 GeneDB misc_feature 2387266 2387271 . + . misc_feature unknown_2054 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2387308 2387321 . + . misc_feature unknown_2055 ; colour "6" ; note "ctaactagctctag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 2387733 2389673 . + . mRNA SPAC22H10.09 ; db_xref "SPD:26/26H05" ; systematic_id "SPAC22H10.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC22H10.09" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2387733 2389673 . + . mRNA SPAC22H10.09 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 2389674 2389816 . + . mRNA SPAC22H10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22H10.09" ; systematic_id "SPAC22H10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2389981 2390085 . + . mRNA SPAC22H10.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22H10.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2390086 2391790 . + . mRNA SPAC22H10.10 ; systematic_id "SPAC22H10.10" ; colour "2" ; gene "alp21 ||| sto1 ||| SPAC22H10.10" ; Alias "alp21" ; db_xref "SPD:35/35D11" ; synonym "sto1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10341216; date=19700101 ||| term=orthologous to S. cerevisiae YER007W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006457; alpha-tubulin folding
GO:0007023; post-chaperonin tubulin folding pathway
GO:0043014; alpha-tubulin binding
GO:0043014; alpha-tubulin binding
GO:0005515; protein binding
GO:0005515; protein binding" ; primary_name "alp21" ; product "tubulin specific chaperone cofactor E" ;
chromosome1 GeneDB CDS 2390086 2390240 . + . mRNA SPAC22H10.10 ; colour "2" ;
chromosome1 GeneDB CDS 2390279 2390547 . + . mRNA SPAC22H10.10 ; colour "2" ;
chromosome1 GeneDB CDS 2390590 2390689 . + . mRNA SPAC22H10.10 ; colour "2" ;
chromosome1 GeneDB CDS 2390736 2391011 . + . mRNA SPAC22H10.10 ; colour "2" ;
chromosome1 GeneDB CDS 2391055 2391790 . + . mRNA SPAC22H10.10 ; colour "2" ;
chromosome1 GeneDB misc_feature 2390241 2390246 . + . misc_feature unknown_2056 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2390267 2390278 . + . misc_feature unknown_2057 ; colour "6" ; note "ctaaactattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2390548 2390553 . + . misc_feature unknown_2058 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2390574 2390589 . + . misc_feature unknown_2059 ; colour "6" ; note "ttaacggaatttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2390690 2390695 . + . misc_feature unknown_2060 ; colour "6" ; note "gcatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2390723 2390735 . + . misc_feature unknown_2061 ; colour "6" ; note "ctaactctttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2391012 2391017 . + . misc_feature unknown_2062 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2391044 2391054 . + . misc_feature unknown_2063 ; colour "6" ; note "ctaatctaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2391791 2391853 . + . mRNA SPAC22H10.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22H10.10" ; systematic_id "SPAC22H10.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2391964 2392369 . - . mRNA SPAC22H10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22H10.11c" ; systematic_id "SPAC22H10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2392370 2394259 . - . mRNA SPAC22H10.11c ; db_xref "SPD:26/26E02" ; systematic_id "SPAC22H10.11c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR223W and YLR223C; date=20080922 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0003714; transcription corepressor activity
GO:0016481; negative regulation of transcription
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0007165; signal transduction
GO:0032569; gene-specific transcription from RNA polymerase II promoter" ; colour "7" ; gene "SPAC22H10.11c" ; product "TOR signaling pathway transcriptional corepressor Crf1 (predicted)" ;
chromosome1 GeneDB CDS 2392370 2394259 . - . mRNA SPAC22H10.11c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2394258 2394272 . - . mRNA SPAC22H10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22H10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2395154 2395414 . - . mRNA SPAC22H10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22H10.12c" ; systematic_id "SPAC22H10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2395415 2396822 . - . mRNA SPAC22H10.12c ; systematic_id "SPAC22H10.12c" ; colour "7" ; gene "gdi1 ||| sec19 ||| SPAC22H10.12c" ; Alias "gdi1" ; db_xref "SPD:44/44E04" ; synonym "sec19" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, X-linked non-specific mental retardation; date=20060920 ||| term=orthologous to S. cerevisiae YER136W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005093; Rab GDP-dissociation inhibitor activity
GO:0007264; small GTPase mediated signal transduction
GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport" ; primary_name "gdi1" ; product "GDP dissociation inhibitor Gdi1 (predicted)" ;
chromosome1 GeneDB CDS 2395415 2396615 . - . mRNA SPAC22H10.12c ; colour "7" ;
chromosome1 GeneDB CDS 2396701 2396822 . - . mRNA SPAC22H10.12c ; colour "7" ;
chromosome1 GeneDB misc_feature 2396616 2396629 . - . misc_feature unknown_2064 ; colour "6" ; note "ctaactcctcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2396695 2396700 . - . misc_feature unknown_2065 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2397271 2397370 . + . misc_feature unknown_2066 ; note "nominal overlap with cosmid SPAC15F9 and cosmid SPAC22H10" ;
chromosome1 GeneDB CDS_parts 2397450 2398188 . - . mRNA SPAC15F9.01c ; db_xref "SPD:43/43A09" ; systematic_id "SPAC15F9.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20080202 ||| term=orthologous to S. cerevisiae YGL060W and YBR216C; date=20080116" ; colour "10" ; gene "SPAC15F9.01c" ; product "central kinetochore associated family protein" ;
chromosome1 GeneDB CDS 2397450 2397823 . - . mRNA SPAC15F9.01c ; colour "10" ;
chromosome1 GeneDB CDS 2397879 2398188 . - . mRNA SPAC15F9.01c ; colour "10" ;
chromosome1 GeneDB misc_feature 2397824 2397836 . - . misc_feature unknown_2067 ; colour "6" ; note "ttaacagctgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2397873 2397878 . - . misc_feature unknown_2068 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 2399421 2400535 . + . mRNA SPAC15F9.02 ; systematic_id "SPAC15F9.02" ; colour "2" ; gene "seh1 ||| SPAC15F9.02" ; Alias "seh1" ; db_xref "SPD:17/17E10" ; GO "; nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0031080; Nup107-160 complex
GO:0005515; protein binding
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YGL100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "seh1" ; product "nucleoporin Seh1" ;
chromosome1 GeneDB CDS 2399421 2399487 . + . mRNA SPAC15F9.02 ; colour "2" ;
chromosome1 GeneDB CDS 2399529 2400462 . + . mRNA SPAC15F9.02 ; colour "2" ;
chromosome1 GeneDB CDS 2400517 2400535 . + . mRNA SPAC15F9.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 2399488 2399493 . + . misc_feature unknown_2069 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2399517 2399528 . + . misc_feature unknown_2070 ; colour "6" ; note "ctaattgtcaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2400463 2400468 . + . misc_feature unknown_2071 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2400503 2400516 . + . misc_feature unknown_2072 ; colour "6" ; note "ctaacttgtgacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2400536 2400654 . + . mRNA SPAC15F9.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15F9.02" ; systematic_id "SPAC15F9.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2400867 2401180 . + . misc_feature unknown_2073 ; note "nominal overlap with cosmid SPAC1B9 and cosmid SPAC15F9" ;
chromosome1 GeneDB 3'-UTR 2400870 2400959 . - . mRNA SPAC15F9.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15F9.03c" ; systematic_id "SPAC15F9.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2400960 2401572 . - . mRNA SPAC15F9.03c ; systematic_id "SPAC15F9.03c" ; colour "2" ; gene "nxt2 ||| SPAC15F9.03c ||| SPAC1B9.01c" ; Alias "nxt2" ; db_xref "SPD:51/51B07" ; synonym "ntf2 ||| nft2 ||| SPAC1B9.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0031965; nuclear membrane
GO:0008536; Ran GTPase binding
GO:0006606; protein import into nucleus" ; primary_name "nxt2" ; product "nuclear transport factor Nxt2" ;
chromosome1 GeneDB CDS 2400960 2401067 . - . mRNA SPAC15F9.03c ; colour "2" ;
chromosome1 GeneDB CDS 2401146 2401247 . - . mRNA SPAC15F9.03c ; colour "2" ;
chromosome1 GeneDB CDS 2401300 2401371 . - . mRNA SPAC15F9.03c ; colour "2" ;
chromosome1 GeneDB CDS 2401441 2401523 . - . mRNA SPAC15F9.03c ; colour "2" ;
chromosome1 GeneDB CDS 2401566 2401572 . - . mRNA SPAC15F9.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 2401068 2401082 . - . misc_feature unknown_2074 ; colour "6" ; note "ttaacctttttgtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2401068 2401145 . - . intron SPAC15F9.03c ; Alias "nxt2" ; db_xref "SPD:51/51B07" ; systematic_id "SPAC15F9.03c" ; primary_name "nxt2" ; gene "nxt2 ||| SPAC15F9.03c ||| SPAC1B9.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2401140 2401145 . - . misc_feature unknown_2075 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2401248 2401264 . - . misc_feature unknown_2076 ; note "ttaactgtttggtatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2401248 2401299 . - . intron SPAC15F9.03c ; Alias "nxt2" ; db_xref "SPD:51/51B07" ; systematic_id "SPAC15F9.03c" ; primary_name "nxt2" ; gene "nxt2 ||| SPAC15F9.03c ||| SPAC1B9.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2401294 2401299 . - . misc_feature unknown_2077 ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2401372 2401389 . - . misc_feature unknown_2078 ; note "ctaacttatatatattag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2401372 2401440 . - . intron SPAC15F9.03c ; Alias "nxt2" ; db_xref "SPD:51/51B07" ; systematic_id "SPAC15F9.03c" ; primary_name "nxt2" ; gene "nxt2 ||| SPAC15F9.03c ||| SPAC1B9.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2401435 2401440 . - . misc_feature unknown_2079 ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2401524 2401537 . - . misc_feature unknown_2080 ; note "ctaatactctgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2401560 2401565 . - . misc_feature unknown_2081 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2402080 2402300 . - . mRNA SPAC1B9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B9.02c" ; systematic_id "SPAC1B9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2402301 2404606 . - . mRNA SPAC1B9.02c ; systematic_id "SPAC1B9.02c" ; colour "2" ; gene "sck1 ||| SPAC1B9.02c" ; Alias "sck1" ; db_xref "SPD:51/51E10" ; GO "GO:0019933; cAMP-mediated signaling
GO:0090062; regulation of trehalose metabolic process
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0031137; regulation of conjugation with cellular fusion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YHR205W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7498728; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20090820 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100218 ||| term=human AKT1 and AKT2 ortholog; date=20100218" ; primary_name "sck1" ; product "serine/threonine protein kinase Sck1" ; EC_number "2.7.11.1" ;
chromosome1 GeneDB CDS 2402301 2402493 . - . mRNA SPAC1B9.02c ; colour "2" ;
chromosome1 GeneDB CDS 2402544 2403510 . - . mRNA SPAC1B9.02c ; colour "2" ;
chromosome1 GeneDB CDS 2403560 2404250 . - . mRNA SPAC1B9.02c ; colour "2" ;
chromosome1 GeneDB CDS 2404367 2404606 . - . mRNA SPAC1B9.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 2402494 2402512 . - . misc_feature unknown_2082 ; note "ctaaccttaaactttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2402538 2402543 . - . misc_feature unknown_2083 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2403511 2403524 . - . misc_feature unknown_2084 ; note "ctaactttatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2403554 2403559 . - . misc_feature unknown_2085 ; note "gtaaag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2404251 2404264 . - . misc_feature unknown_2086 ; note "ctaacctatcatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2404361 2404366 . - . misc_feature unknown_2087 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2404605 2404667 . - . mRNA SPAC1B9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2404684 2405924 . + . misc_RNA SPNCRNA.193 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.193" ; synonym "SPNG436" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "possible UTR for SPAC1B9.02c (sck1) ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2406647 2406663 . + . mRNA SPAC1B9.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B9.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2406664 2407951 . + . mRNA SPAC1B9.03c ; systematic_id "SPAC1B9.03c" ; colour "7" ; gene "SPAC6B12.01 ||| SPAC1B9.03c" ; Alias "SPAC6B12.01" ; db_xref "SPD:16/16H05" ; synonym "SPAC6B12.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR066W and YDR312W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005730; nucleolus
GO:0000027; ribosomal large subunit assembly and maintenance
GO:0019843; rRNA binding" ; primary_name "SPAC6B12.01" ; product "RNA-binding protein involved in ribosomal large subunit assembly and maintenance (predicted)" ;
chromosome1 GeneDB CDS 2406664 2406687 . + . mRNA SPAC1B9.03c ; colour "7" ;
chromosome1 GeneDB CDS 2406746 2406805 . + . mRNA SPAC1B9.03c ; colour "7" ;
chromosome1 GeneDB CDS 2406866 2407951 . + . mRNA SPAC1B9.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 2406688 2406693 . + . misc_feature unknown_2088 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2406731 2406745 . + . misc_feature unknown_2089 ; note "ctaatttaattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2406773 2406863 . + . misc_feature unknown_2090 ; note "nominal overlap with cosmid SPAC1B9 and cosmid SPAC6B12" ;
chromosome1 GeneDB misc_feature 2406806 2406811 . + . misc_feature unknown_2091 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2406850 2406863 . + . misc_feature unknown_2092 ; note "ctaattcttattta, splice branch and acceptor -missing AG in cosmid SPAC6B12" ;
chromosome1 GeneDB 3'-UTR 2407952 2408025 . + . mRNA SPAC1B9.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B9.03c" ; systematic_id "SPAC1B9.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2408304 2413970 . - . mRNA SPAC6B12.02c ; systematic_id "SPAC6B12.02c" ; colour "2" ; gene "mus7 ||| SPAC6B12.02c ||| mms22" ; Alias "mus7" ; db_xref "SPD:48/48H08" ; synonym "mms22" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17307401|PMID:17660542; date=20070222 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to MMS; cv=phenotype; db_xref=PMID:17307401; date=20091215 ||| term=phenotype, sensitive to CPT; cv=phenotype; db_xref=PMID:17307401; date=20091215 ||| term=phenotype, sensitive to HU; cv=phenotype; db_xref=PMID:17307401; date=20091215 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance|deletion; cv=phenotype; db_xref=PMID:17307401; date=20091215 ||| term=orthologous to S. cerevisiae YLR320W; db_xref=PMID:17660542; date=20071003 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005634; nucleus
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0031297; collapsed replication fork processing
GO:0031297; collapsed replication fork processing
GO:0031297; collapsed replication fork processing
GO:0000724; double-strand break repair via homologous recombination
GO:0006302; double-strand break repair
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus" ; primary_name "mus7" ; product "DNA repair protein Mus7/Mms22" ;
chromosome1 GeneDB CDS 2408304 2413970 . - . mRNA SPAC6B12.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2413969 2414017 . - . mRNA SPAC6B12.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6B12.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2414229 2415137 . - . mRNA SPAC6B12.03c ; db_xref "SPD:43/43E09" ; systematic_id "SPAC6B12.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=orthologous to S. cerevisiae YBR270C and YJL058C; date=20091107 ||| term=species distribution, conserved in Vertebrates; date=20091107 ||| term=species distribution, conserved in Metazoa; date=20091107 ||| term=species distribution, conserved in Eukaryotes only; date=20091107" ; colour "10" ; gene "SPAC6B12.03c" ; product "HbrB family protein" ;
chromosome1 GeneDB CDS 2414229 2415137 . - . mRNA SPAC6B12.03c ; colour "10" ;
chromosome1 GeneDB LTR 2415505 2415860 . + . LTR unknown_2093 ; colour "4" ; note "retrotransposon; LTR; Tf1-107- like." ;
chromosome1 GeneDB 5'-UTR 2416235 2416348 . + . mRNA SPAC6B12.18 ; ID "SPAC6B12.18" ; db_xref "EMBL:AB084867 ||| PMID:12597277" ; systematic_id "SPAC6B12.18" ;
chromosome1 GeneDB CDS_parts 2416385 2416606 . + . mRNA SPAC6B12.18 ; systematic_id "SPAC6B12.18" ; colour "7" ; db_xref "EMBL:AB084867 ||| PMID:12597277" ; Alias "gon7" ; synonym "prl55 ||| SPNCRNA.55" ; GO "GO:0000408; EKC/KEOPS complex
GO:0000790; nuclear chromatin
GO:0006357; regulation of transcription form RNA polymerase II
GO:0000723; telomere maintenance" ; controlled_curation "term=species distribution, conserved in Fungi; date=20091022 ||| term=species distribution, conserved in Fungi only; date=20091022 ||| term=orthologous to S. cerevisiae YJL184W; date=20091022 ||| term=warning, new gene; date=20100909" ; primary_name "gon7" ; product "EKC/KEOPS complex subunit Gon7 (predicted)" ;
chromosome1 GeneDB CDS 2416385 2416606 . + . mRNA SPAC6B12.18 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2416607 2416706 . + . mRNA SPAC6B12.18 ; ID "SPAC6B12.18" ; db_xref "EMBL:AB084867 ||| PMID:12597277" ; systematic_id "SPAC6B12.18" ;
chromosome1 GeneDB 3'-UTR 2416766 2416781 . - . mRNA SPAC6B12.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6B12.04c" ; systematic_id "SPAC6B12.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2416782 2418047 . - . mRNA SPAC6B12.04c ; systematic_id "SPAC6B12.04c" ; colour "7" ; gene "SPAC6B12.04c" ; note "no other genes of the kynurenine pathway (de novo synthesis of NAD+ from tryptophan) can be identified in S. pombe the arylformamidase activity molecular function was not included in the annotation inference." ; db_xref "SPD:20/20C04" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0008483; transaminase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "aminotransferase class I and II (predicted)" ; EC_number "2.6.1.-" ;
chromosome1 GeneDB CDS 2416782 2418047 . - . mRNA SPAC6B12.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2418046 2418144 . - . mRNA SPAC6B12.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6B12.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2418694 2418731 . - . mRNA SPAC6B12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6B12.05c" ; systematic_id "SPAC6B12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2418732 2419619 . - . mRNA SPAC6B12.05c ; systematic_id "SPAC6B12.05c" ; colour "2" ; gene "ies2 ||| SPAC6B12.05c" ; Alias "ies2" ; db_xref "SPD:12/12A05" ; GO "GO:0005634; nucleus
GO:0006338; chromatin remodeling
GO:0016585; chromatin remodeling complex
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL215W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ies2" ; product "Ino80 complex subunit Ies2" ;
chromosome1 GeneDB CDS 2418732 2419619 . - . mRNA SPAC6B12.05c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2419618 2419791 . - . mRNA SPAC6B12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6B12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2420450 2420487 . - . mRNA SPAC6B12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6B12.06c" ; systematic_id "SPAC6B12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2420488 2420841 . - . mRNA SPAC6B12.06c ; systematic_id "SPAC6B12.06c" ; colour "7" ; gene "SPAC6B12.06c" ; Alias "rrg9" ; db_xref "SPD:01/01A10" ; GO "GO:0005739; mitochondrion
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL213C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Metazoa; date=20090202 ||| term=species distribution, conserved in Eukaryotes only; date=20090202 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090905 ||| term=human NGRN ortholog; date=20100715" ; primary_name "rrg9" ; product "mitochondrial genome maintenance protein Rrg9 (predicted)" ;
chromosome1 GeneDB CDS 2420488 2420841 . - . mRNA SPAC6B12.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2420840 2420894 . - . mRNA SPAC6B12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6B12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2421499 2421790 . - . mRNA SPAC6B12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6B12.07c" ; systematic_id "SPAC6B12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2421791 2423161 . - . mRNA SPAC6B12.07c ; db_xref "SPD:21/21C02" ; systematic_id "SPAC6B12.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=SPX domain protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination" ; gene "SPAC6B12.07c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB CDS 2421791 2423161 . - . mRNA SPAC6B12.07c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2423160 2423809 . - . mRNA SPAC6B12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6B12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2424735 2425515 . + . misc_RNA SPNCRNA.194 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.194" ; synonym "SPNG442" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 2426191 2427467 . + . mRNA SPAC6B12.08 ; systematic_id "SPAC6B12.08" ; colour "7" ; gene "SPAC6B12.08 ||| mug185" ; Alias "mug185" ; db_xref "SPD:20/20D10" ; GO "GO:0030544; Hsp70 protein binding
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YNL227C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mug185" ; product "Co-chaperone for ATPase activity (predicted)" ;
chromosome1 GeneDB CDS 2426191 2426279 . + . mRNA SPAC6B12.08 ; colour "7" ;
chromosome1 GeneDB CDS 2426414 2427467 . + . mRNA SPAC6B12.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 2426280 2426285 . + . misc_feature unknown_2094 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2426401 2426413 . + . misc_feature unknown_2095 ; colour "6" ; note "ctaatcataacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2426514 2427532 . - . mRNA SPAC6B12.19 ; db_xref "PMID:21270388" ; systematic_id "SPAC6B12.19" ;
chromosome1 GeneDB CDS_parts 2427533 2427775 . - . mRNA SPAC6B12.19 ; Alias "rsa3" ; synonym "new7" ; systematic_id "SPAC6B12.19" ; GO "GO:0000027; ribosomal large subunit assembly
GO:0030687; preribosome, large subunit precursor
GO:0005730; nucleolus" ; colour "7" ; controlled_curation "term=conserved in Fungi; date=20090716 ||| term=similar to S. cerevisiae YLR221C; date=20090716 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "rsa3" ; product "ribosome assembly protein Rsa3 (predicted)" ;
chromosome1 GeneDB CDS 2427533 2427775 . - . mRNA SPAC6B12.19 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2427776 2427893 . - . mRNA SPAC6B12.19 ; db_xref "PMID:21270388" ; systematic_id "SPAC6B12.19" ;
chromosome1 GeneDB CDS_parts 2428020 2428934 . + . mRNA SPAC6B12.09 ; systematic_id "SPAC6B12.09" ; colour "7" ; gene "trm10 ||| SPAC6B12.09" ; Alias "trm10" ; db_xref "SPD:12/12F10" ; GO "GO:0009019; tRNA (guanine-N1-)-methyltransferase activity
GO:0030488; tRNA methylation
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=19700101 ||| term=orthologous to S. cerevisiae YOL093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trm10" ; product "tRNA m(1)G methyltransferase Trm10 (predicted)" ;
chromosome1 GeneDB CDS 2428020 2428934 . + . mRNA SPAC6B12.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2428935 2428979 . + . mRNA SPAC6B12.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6B12.09" ; systematic_id "SPAC6B12.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2429086 2429168 . - . mRNA SPAC6B12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6B12.10c" ; systematic_id "SPAC6B12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2429169 2430617 . - . mRNA SPAC6B12.10c ; systematic_id "SPAC6B12.10c" ; colour "2" ; gene "spp1 ||| pri1 ||| SPAC6B12.10c" ; Alias "spp1" ; db_xref "SPD:23/23C12" ; synonym "pri1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:11160827; date=20100708 ||| term=phenotype, cut; qualifier=ts; db_xref=PMID:11160827; date=20100708 ||| term=orthologous to S. cerevisiae YIR008C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000723; telomere maintenance
GO:0000790; nuclear chromatin
GO:0006269; DNA replication, synthesis of RNA primer
GO:0043596; nuclear replication fork
GO:0005658; alpha DNA polymerase:primase complex
GO:0003896; DNA primase activity" ; primary_name "spp1" ; product "DNA primase catalytic subunit Spp1" ;
chromosome1 GeneDB CDS 2429169 2430459 . - . mRNA SPAC6B12.10c ; colour "2" ;
chromosome1 GeneDB CDS 2430544 2430617 . - . mRNA SPAC6B12.10c ; colour "2" ;
chromosome1 GeneDB misc_feature 2430460 2430480 . - . misc_feature unknown_2096 ; colour "6" ; note "tctctaacaattttcttatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2430460 2430543 . - . intron SPAC6B12.10c ; Alias "spp1" ; db_xref "SPD:23/23C12" ; systematic_id "SPAC6B12.10c" ; primary_name "spp1" ; gene "spp1 ||| pri1 ||| SPAC6B12.10c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2430538 2430543 . - . misc_feature unknown_2097 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2430616 2430626 . - . mRNA SPAC6B12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6B12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2430847 2430997 . + . mRNA SPAC6B12.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6B12.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2430998 2432107 . + . mRNA SPAC6B12.11 ; systematic_id "SPAC6B12.11" ; colour "2" ; gene "drc1 ||| SPAC6B12.11 ||| sld1" ; Alias "drc1" ; db_xref "SPD:17/17D11" ; synonym "sld2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:11937031; date=20100826" ; GO "GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006261; DNA replication
GO:0006271; DNA strand elongation
GO:0031574; S-M checkpoint
GO:0031261; DNA replication preinitiation complex
GO:0071163; DNA replication preinitiation complex assembly" ; primary_name "drc1" ; product "DNA replication checkpoint protein Drc1" ;
chromosome1 GeneDB CDS 2430998 2431127 . + . mRNA SPAC6B12.11 ; colour "2" ;
chromosome1 GeneDB CDS 2431184 2431816 . + . mRNA SPAC6B12.11 ; colour "2" ;
chromosome1 GeneDB CDS 2431857 2432107 . + . mRNA SPAC6B12.11 ; colour "2" ;
chromosome1 GeneDB misc_feature 2431128 2431133 . + . misc_feature unknown_2098 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2431167 2431183 . + . misc_feature unknown_2099 ; colour "6" ; note "ctaacgaacttttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2431817 2431822 . + . misc_feature unknown_2100 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2431845 2431856 . + . misc_feature unknown_2101 ; colour "6" ; note "ctaacgttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2432108 2432720 . + . mRNA SPAC6B12.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6B12.11" ; systematic_id "SPAC6B12.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2432340 2432921 . - . misc_RNA SPNCRNA.43 ; Alias "prl43" ; db_xref "EMBL:AB084855 ||| PMID:12597277" ; systematic_id "SPNCRNA.43" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl43" ; gene "prl43 ||| SPNCRNA.43" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome1 GeneDB tRNA 2433048 2433119 . + . tRNA SPATRNATHR.02 ; systematic_id "SPATRNATHR.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033445; AGT codon-amino acid adaptor activity" ; gene "SPATRNATHR.02" ; product "tRNA Threonine" ; note "tRNA Thr anticodon AGT, Cove score 75.01" ;
chromosome1 GeneDB 5'-UTR 2433377 2433391 . + . mRNA SPAC6B12.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6B12.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2433392 2435269 . + . mRNA SPAC6B12.12 ; systematic_id "SPAC6B12.12" ; colour "7" ; gene "tom70 ||| SPAC6B12.12" ; Alias "tom70" ; db_xref "SPD:36/36H11" ; GO "GO:0015450; protein translocase activity
GO:0005742; mitochondrial outer membrane translocase complex
GO:0045039; protein import into mitochondrial inner membrane
GO:0005047; signal recognition particle binding
GO:0008565; protein transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL121C and YHR117W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tom70" ; product "mitochondrial TOM complex subunit Tom70 (predicted)" ;
chromosome1 GeneDB CDS 2433392 2435269 . + . mRNA SPAC6B12.12 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2435270 2435577 . + . mRNA SPAC6B12.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6B12.12" ; systematic_id "SPAC6B12.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2435909 2436048 . + . mRNA SPAC6B12.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6B12.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2436049 2436588 . + . mRNA SPAC6B12.13 ; db_xref "SPD:05/05E02" ; systematic_id "SPAC6B12.13" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004864; protein phosphatase inhibitor activity
GO:0006470; protein amino acid dephosphorylation" ; gene "SPAC6B12.13" ; product "protein phosphatase inhibitor (predicted)" ;
chromosome1 GeneDB CDS 2436049 2436241 . + . mRNA SPAC6B12.13 ; colour "7" ;
chromosome1 GeneDB CDS 2436467 2436588 . + . mRNA SPAC6B12.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 2436242 2436247 . + . misc_feature unknown_2102 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2436437 2436466 . + . misc_feature unknown_2103 ; colour "6" ; note "ttaacatgatgtgatgctaaatattactag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2436589 2436895 . + . mRNA SPAC6B12.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6B12.13" ; systematic_id "SPAC6B12.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2436999 2437463 . - . mRNA SPAC6B12.14c ; db_xref "SPD:04/04C03" ; systematic_id "SPAC6B12.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "10" ; gene "SPAC6B12.14c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 2436999 2437463 . - . mRNA SPAC6B12.14c ; colour "10" ;
chromosome1 GeneDB LTR 2437580 2437941 . + . LTR unknown_2104 ; colour "4" ; note "retrotransposon; LTR; Tf1-107- like" ;
chromosome1 GeneDB misc_RNA 2438820 2439389 . + . misc_RNA SPNCRNA.195 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.195" ; synonym "SPNG446" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 2439532 2440926 . + . mRNA SPAC6B12.15 ; systematic_id "SPAC6B12.15" ; colour "2" ; gene "cpc2 ||| rkp1 ||| SPAC6B12.15" ; Alias "cpc2" ; db_xref "SPD:21/21E12" ; synonym "rkp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15277777; date=20060503 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:11263963; date=20100705 ||| term=WD repeat protein; date=20060503 ||| term=pathway, protein kinase C-Pck2- signaling pathway; db_xref=PMID:11263963; date=20060503 ||| term=orthologous to S. cerevisiae YMR116C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Receptor for activated protein Kinase of S. Pombe; date=20090710 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target of Ran1; qualifier=phosphorylated_by; db_xref=PMID:10805744; date=20100826 ||| term=warning, ncRNA in intron; cv=warning; date=20100122" ; GO "GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
; protein binding
GO:0005080; protein kinase C binding
GO:0043022; ribosome binding
GO:0032956; regulation of actin cytoskeleton organization
GO:0032995; regulation of fungal-type cell wall organization and biogenesis
GO:0034613; cellular protein localization
GO:0023034; intracellular signaling cascade
GO:0031139; positive regulation of conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion
GO:0017148; negative regulation of translation" ; primary_name "cpc2" ; product "RACK1 ortholog Cpc2" ;
chromosome1 GeneDB CDS 2439532 2439657 . + . mRNA SPAC6B12.15 ; colour "2" ;
chromosome1 GeneDB CDS 2439855 2440253 . + . mRNA SPAC6B12.15 ; colour "2" ;
chromosome1 GeneDB CDS 2440507 2440926 . + . mRNA SPAC6B12.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 2439658 2439663 . + . misc_feature unknown_2105 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 2439658 2439854 . + . intron SPAC6B12.15 ; Alias "cpc2" ; db_xref "SPD:21/21E12" ; systematic_id "SPAC6B12.15" ; primary_name "cpc2" ; gene "cpc2 ||| rkp1 ||| SPAC6B12.15" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2439839 2439854 . + . misc_feature unknown_2106 ; colour "6" ; note "ctaacatctatttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2440254 2440259 . + . misc_feature unknown_2107 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2440254 2440506 . + . intron SPAC6B12.15 ; Alias "cpc2" ; db_xref "SPD:21/21E12" ; systematic_id "SPAC6B12.15" ; primary_name "cpc2" ; gene "cpc2 ||| rkp1 ||| SPAC6B12.15" ; note "confirmed intron by BLAST homology and est" ;
chromosome1 GeneDB snoRNA 2440336 2440418 . + . snoRNA SPSNORNA.11 ; systematic_id "SPSNORNA.11" ; gene "U24b-sno ||| SPSNORNA.11 ||| snoU24b" ; db_xref "EMBL:AJ617313" ; Alias "snoU24b" ; synonym "snR24" ; controlled_curation "term=orthologous to S. cerevisiae U24; date=20070104 ||| term=warning, ncRNA in intron; date=20101030" ; primary_name "snoU24b" ; product "small nucleolar RNA U24b (predicted)" ;
chromosome1 GeneDB misc_feature 2440491 2440506 . + . misc_feature unknown_2108 ; colour "6" ; note "ctaactctcttcaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2440927 2441027 . + . mRNA SPAC6B12.15 ; Alias "cpc2" ; ID "SPAC6B12.15" ; db_xref "SPD:21/21E12" ; systematic_id "SPAC6B12.15" ; primary_name "cpc2" ; gene "cpc2 ||| rkp1 ||| SPAC6B12.15" ; note "mRNA from SPGNRP" ;
chromosome1 GeneDB tRNA 2441963 2442037 . + . tRNA SPATRNALYS.03 ; systematic_id "SPATRNALYS.03" ; GO "GO:0006414; translational elongation
GO:0033401; TTT codon-amino acid adaptor activity
GO:0005737; cytoplasm" ; gene "SPATRNALYS.03" ; product "tRNA Lysine" ; note "tRNA Lys anticodon TTT, Cove score 75.86" ;
chromosome1 GeneDB CDS_parts 2442689 2443829 . + . mRNA SPAC6B12.16 ; systematic_id "SPAC6B12.16" ; colour "10" ; gene "meu26 ||| SPAC6B12.16" ; note "conserved KTS*YWYHMN**HGI*SKG" ; Alias "meu26" ; db_xref "SPD:18/18A05" ; GO "GO:0005634; nucleus
GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to E. cuniculi ECU03_0350; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101" ; primary_name "meu26" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 2442689 2443634 . + . mRNA SPAC6B12.16 ; colour "10" ;
chromosome1 GeneDB CDS 2443741 2443829 . + . mRNA SPAC6B12.16 ; colour "10" ;
chromosome1 GeneDB misc_feature 2443635 2443640 . + . misc_feature unknown_2109 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2443727 2443740 . + . misc_feature unknown_2110 ; colour "6" ; note "ctaacacttctcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2443937 2443985 . - . mRNA SPAC32A11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC32A11.04c" ; systematic_id "SPAC32A11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2443986 2445031 . - . mRNA SPAC32A11.04c ; systematic_id "SPAC32A11.04c" ; colour "7" ; gene "tif212 ||| tif22 ||| SPAC6B12.17c ||| SPAC32A11.04c" ; Alias "tif212" ; db_xref "SPD:15/15H05" ; synonym "tif22 ||| SPAC6B12.17c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL237W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005850; eukaryotic translation initiation factor 2 complex
GO:0043614; multi-eIF complex
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation" ; primary_name "tif212" ; product "translation initiation factor eIF2 beta subunit (predicted)" ;
chromosome1 GeneDB CDS 2443986 2444921 . - . mRNA SPAC32A11.04c ; colour "7" ;
chromosome1 GeneDB CDS 2445002 2445031 . - . mRNA SPAC32A11.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 2444909 2444918 . + . misc_feature unknown_2111 ; note "nominal overlap with cosmid SPAC6B12 and cosmid SPAC32A11" ;
chromosome1 GeneDB misc_feature 2444922 2444939 . - . misc_feature unknown_2112 ; colour "6" ; note "ctaacatgtcattaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2444996 2445001 . - . misc_feature unknown_2113 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2445030 2445037 . - . mRNA SPAC32A11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC32A11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2445257 2445279 . + . mRNA SPAC32A11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC32A11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2445280 2447585 . + . mRNA SPAC32A11.01 ; systematic_id "SPAC32A11.01" ; colour "10" ; gene "SPAC32A11.01 ||| mug8" ; note "possible alternative for first splice donor sequence at 418 (gtatgg); orthology prediction, reciprocal Blast and PSI Blast (pers. comm. Maria Novatchkova)" ; Alias "mug8" ; db_xref "SPD:38/38C02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR188W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mug8" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 2445280 2445412 . + . mRNA SPAC32A11.01 ; colour "10" ;
chromosome1 GeneDB CDS 2445473 2445968 . + . mRNA SPAC32A11.01 ; colour "10" ;
chromosome1 GeneDB CDS 2446052 2447585 . + . mRNA SPAC32A11.01 ; colour "10" ;
chromosome1 GeneDB misc_feature 2445413 2445418 . + . misc_feature unknown_2114 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2445457 2445472 . + . misc_feature unknown_2115 ; colour "6" ; note "ttaacaattaacacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2445969 2445974 . + . misc_feature unknown_2116 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2446035 2446051 . + . misc_feature unknown_2117 ; colour "6" ; note "ttaacctaaatgtatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2447897 2447947 . - . mRNA SPAC32A11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC32A11.02c" ; systematic_id "SPAC32A11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2447948 2450503 . - . mRNA SPAC32A11.02c ; db_xref "SPD:38/38D10" ; systematic_id "SPAC32A11.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC32A11.02c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 2447948 2450503 . - . mRNA SPAC32A11.02c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2450502 2451032 . - . mRNA SPAC32A11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC32A11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2452132 2452718 . - . mRNA SPAC32A11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC32A11.03c" ; systematic_id "SPAC32A11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2452719 2455547 . - . mRNA SPAC32A11.03c ; systematic_id "SPAC32A11.03c" ; colour "2" ; gene "phx1 ||| SPAC32A11.03c" ; db_xref "SPD:29/29E08" ; Alias "phx1" ; GO "GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pombe HomeoboX; cv=name_description; date=20100104" ; primary_name "phx1" ; product "homeobox transcription factor Phx1" ;
chromosome1 GeneDB CDS 2452719 2455547 . - . mRNA SPAC32A11.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2455546 2456477 . - . mRNA SPAC32A11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC32A11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2456290 2456309 . + . misc_feature unknown_2118 ; note "nominal overlap with cosmid SPAC32A11 and cosmid SPAC19A8" ;
chromosome1 GeneDB 3'-UTR 2457495 2457657 . - . mRNA SPAC19A8.15 ; Alias "trp2" ; ID "SPAC19A8.15" ; db_xref "SPD:27/27H01" ; systematic_id "SPAC19A8.15" ; primary_name "trp2" ; gene "trp2 ||| SPAC19A8.15" ; note "mRNA from AU011243" ;
chromosome1 GeneDB CDS_parts 2457658 2459751 . - . mRNA SPAC19A8.15 ; systematic_id "SPAC19A8.15" ; colour "7" ; gene "trp2 ||| SPAC19A8.15" ; Alias "trp2" ; db_xref "SPD:27/27H01" ; GO "GO:0000162; tryptophan biosynthesis
GO:0004834; tryptophan synthase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL026C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "trp2" ; product "tryptophan synthase (predicted)" ; EC_number "4.2.1.20" ;
chromosome1 GeneDB CDS 2457658 2459751 . - . mRNA SPAC19A8.15 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2459750 2459781 . - . mRNA SPAC19A8.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19A8.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2460221 2460339 . - . mRNA SPAC19A8.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19A8.14" ; systematic_id "SPAC19A8.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2460340 2460957 . - . mRNA SPAC19A8.14 ; db_xref "SPD:07/07A01" ; systematic_id "SPAC19A8.14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL057C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0004045; aminoacyl-tRNA hydrolase activity
GO:0006412; translation
GO:0005737; cytoplasm
GO:0005739; mitochondrion" ; gene "SPAC19A8.14" ; product "aminoacyl-tRNA hydrolase (predicted)" ;
chromosome1 GeneDB CDS 2460340 2460957 . - . mRNA SPAC19A8.14 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2461205 2461348 . - . mRNA SPAC19A8.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19A8.13" ; systematic_id "SPAC19A8.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2461349 2462134 . - . mRNA SPAC19A8.13 ; systematic_id "SPAC19A8.13" ; colour "2" ; gene "usp101 ||| SPAC19A8.13 ||| snp1" ; Alias "usp101" ; db_xref "SPD:09/09G10" ; synonym "snp1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17264129; date=20070201 ||| term=orthologous to S. cerevisiae YIL061C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000243; commitment complex
GO:0005685; snRNP U1
GO:0030619; U1 snRNA binding
GO:0003729; mRNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000395; nuclear mRNA 5'-splice site recognition" ; primary_name "usp101" ; product "U1 snRNP-associated protein Usp101 (predicted)" ;
chromosome1 GeneDB CDS 2461349 2462134 . - . mRNA SPAC19A8.13 ; colour "2" ;
chromosome1 GeneDB CDS_parts 2462726 2464951 . - . mRNA SPAC19A8.12 ; systematic_id "SPAC19A8.12" ; colour "2" ; gene "dcp2 ||| SPAC19A8.12" ; Alias "dcp2" ; db_xref "SPD:46/46G04" ; GO "GO:0005737; cytoplasm
GO:0000932; cytoplasmic mRNA processing body
GO:0005845; mRNA cap complex
GO:0005845; mRNA cap complex
GO:0005634; nucleus
GO:0000340; RNA 7-methylguanosine cap binding
GO:0050072; m7G(5')pppN diphosphatase activity
GO:0050072; m7G(5')pppN diphosphatase activity
GO:0000287; magnesium ion binding
GO:0005515; protein binding
GO:0000290; deadenylation-dependent decapping
GO:0031087; deadenylation-independent decapping
GO:0000184; mRNA catabolism, nonsense-mediated decay" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL118C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dcp2" ; product "mRNA decapping complex catalytic subunit Dcp2" ; EC_number "3.6.1.30" ;
chromosome1 GeneDB CDS 2462726 2464951 . - . mRNA SPAC19A8.12 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2464950 2465057 . - . mRNA SPAC19A8.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19A8.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2465166 2465347 . + . mRNA SPAC19A8.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19A8.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2465348 2466213 . + . mRNA SPAC19A8.11c ; db_xref "SPD:11/11F03" ; systematic_id "SPAC19A8.11c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR043C; date=19700101 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0007131; meiotic recombination" ; gene "SPAC19A8.11c" ; product "recombination protein Irc6 (predicted)" ;
chromosome1 GeneDB CDS 2465348 2465405 . + . mRNA SPAC19A8.11c ; colour "7" ;
chromosome1 GeneDB CDS 2465446 2465835 . + . mRNA SPAC19A8.11c ; colour "7" ;
chromosome1 GeneDB CDS 2465878 2466069 . + . mRNA SPAC19A8.11c ; colour "7" ;
chromosome1 GeneDB CDS 2466113 2466213 . + . mRNA SPAC19A8.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 2465406 2465411 . + . misc_feature unknown_2119 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2465434 2465445 . + . misc_feature unknown_2120 ; colour "6" ; note "ctaattgaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2465836 2465841 . + . misc_feature unknown_2121 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2465861 2465877 . + . misc_feature unknown_2122 ; colour "6" ; note "ttaacaagtctctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2466070 2466075 . + . misc_feature unknown_2123 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2466096 2466112 . + . misc_feature unknown_2124 ; colour "6" ; note "ctaacaacgaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2466214 2466266 . + . mRNA SPAC19A8.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19A8.11c" ; systematic_id "SPAC19A8.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2466377 2466494 . - . mRNA SPAC19A8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19A8.10" ; systematic_id "SPAC19A8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2466495 2467259 . - . mRNA SPAC19A8.10 ; systematic_id "SPAC19A8.10" ; colour "2" ; gene "rfp1 ||| SPAC19A8.10 ||| mug140" ; Alias "rfp1" ; db_xref "SPD:09/09D11" ; synonym "mug140" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDL013W; date=20070716 ||| term=human RNF4 family; db_xref=PMID:17502373; date=20070716 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17502373; date=20070716 ||| term=SUMO interaction motif; db_xref=PMID:17762865; date=20071123 ||| term=target is Rad60; db_xref=PMID:17762865; date=20071123 ||| term=complementation, functionally complemented by human RNF4; db_xref=PMID:17762865|PMID:17502373; cv=complementation; date=20071123 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0033768; SUMO-targeted ubiquitin ligase complex
GO:0005634; nucleus
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006281; DNA repair
GO:0033234; negative regulation of protein sumoylation
GO:0033234; negative regulation of protein sumoylation
GO:0016567; protein ubiquitination
GO:0007346; regulation of mitotic cell cycle
GO:0051438; regulation of ubiquitin-protein ligase activity
GO:0006974; response to DNA damage stimulus" ; primary_name "rfp1" ; product "SUMO-targeted ubiquitin-protein ligase subunit Rfp1" ;
chromosome1 GeneDB CDS 2466495 2467259 . - . mRNA SPAC19A8.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2467752 2467944 . - . mRNA SPAC19A8.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19A8.09" ; systematic_id "SPAC19A8.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2467945 2468319 . - . mRNA SPAC19A8.09 ; db_xref "SPD:34/34D09" ; systematic_id "SPAC19A8.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER074W-A; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005789; endoplasmic reticulum membrane
GO:0000139; Golgi membrane" ; gene "SPAC19A8.09" ; product "ER to Golgi transport protein Yos1 (predicted)" ;
chromosome1 GeneDB CDS 2467945 2468000 . - . mRNA SPAC19A8.09 ; colour "7" ;
chromosome1 GeneDB CDS 2468043 2468144 . - . mRNA SPAC19A8.09 ; colour "7" ;
chromosome1 GeneDB CDS 2468195 2468254 . - . mRNA SPAC19A8.09 ; colour "7" ;
chromosome1 GeneDB CDS 2468292 2468319 . - . mRNA SPAC19A8.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 2468001 2468017 . - . misc_feature unknown_2125 ; colour "6" ; note "ctaattttaaattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2468037 2468042 . - . misc_feature unknown_2126 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2468145 2468161 . - . misc_feature unknown_2127 ; colour "6" ; note "ctaattattgaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2468189 2468194 . - . misc_feature unknown_2128 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2468255 2468266 . - . misc_feature unknown_2129 ; colour "6" ; note "ctaatttgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2468286 2468291 . - . misc_feature unknown_2130 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2468318 2468360 . - . mRNA SPAC19A8.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19A8.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2468576 2468793 . - . mRNA SPAC19A8.08 ; Alias "upf2" ; ID "SPAC19A8.08" ; db_xref "SPD:30/30B05" ; systematic_id "SPAC19A8.08" ; primary_name "upf2" ; gene "upf2 ||| SPAC19A8.08" ; note "mRNA from AU012873" ;
chromosome1 GeneDB CDS_parts 2468794 2471943 . - . mRNA SPAC19A8.08 ; systematic_id "SPAC19A8.08" ; colour "2" ; gene "upf2 ||| SPAC19A8.08" ; Alias "upf2" ; db_xref "SPD:30/30B05" ; GO "GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "upf2" ; product "nonsense-mediated decay protein Upf2" ;
chromosome1 GeneDB CDS 2468794 2471943 . - . mRNA SPAC19A8.08 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2471942 2471987 . - . mRNA SPAC19A8.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19A8.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2472399 2472897 . - . misc_RNA SPNCRNA.65 ; Alias "prl65" ; db_xref "EMBL:AB084877 ||| PMID:12597277" ; systematic_id "SPNCRNA.65" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl65" ; gene "prl65 ||| SPNCRNA.65" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome1 GeneDB misc_RNA 2474084 2474170 . + . misc_RNA SPNCRNA.286 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.286" ; synonym "SPNG450" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB LTR 2474235 2474583 . - . LTR unknown_2131 ; colour "4" ; note "solo tf2 LTR" ;
chromosome1 GeneDB CDS_parts 2474717 2475586 . + . mRNA SPAC19A8.07c ; db_xref "SPD:11/11G02" ; systematic_id "SPAC19A8.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL075W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0006364; rRNA processing
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0003723; RNA binding" ; gene "SPAC19A8.07c" ; product "U3 snoRNP-associated protein Imp4 (predicted)" ;
chromosome1 GeneDB CDS 2474717 2475586 . + . mRNA SPAC19A8.07c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2475587 2475727 . + . mRNA SPAC19A8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19A8.07c" ; systematic_id "SPAC19A8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2475946 2475965 . - . mRNA SPAC19A8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19A8.06" ; systematic_id "SPAC19A8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2475966 2477159 . - . mRNA SPAC19A8.06 ; db_xref "SPD:19/19A06" ; systematic_id "SPAC19A8.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL181W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0016726; oxidoreductase activity, acting on CH2 groups, NAD or NADP as acceptor
GO:0005783; endoplasmic reticulum
GO:0031965; nuclear membrane" ; gene "SPAC19A8.06" ; product "short chain dehydrogenase (predicted)" ;
chromosome1 GeneDB CDS 2475966 2477159 . - . mRNA SPAC19A8.06 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2477876 2478118 . + . mRNA SPAC19A8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19A8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2478119 2479951 . + . mRNA SPAC19A8.05c ; systematic_id "SPAC19A8.05c" ; colour "2" ; gene "vps27 ||| SPAC19A8.05c ||| sst4" ; Alias "sst4" ; db_xref "SPD:36/36G01" ; synonym "vps27" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=orthologous to S. cerevisiae YNR006W; date=19700101 ||| term=ENTH/VHS domain protein; date=20080505 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0033565; ESCRT-0 complex
GO:0005628; prospore membrane
GO:0035091; phosphatidylinositol 3-phosphate binding
GO:0043130; ubiquitin binding
GO:0006897; endocytosis
GO:0045324; late endosome to vacuole transport
GO:0031321; prospore formation
GO:0031321; prospore formation
GO:0045053; protein retention in Golgi
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway" ; primary_name "sst4" ; product "sorting receptor for ubiquitinated membrane proteins, ESCRT 0 complex subunit Sst4" ;
chromosome1 GeneDB CDS 2478119 2479951 . + . mRNA SPAC19A8.05c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2480071 2480146 . - . mRNA SPAC19A8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19A8.04" ; systematic_id "SPAC19A8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2480147 2482104 . - . mRNA SPAC19A8.04 ; systematic_id "SPAC19A8.04" ; colour "2" ; db_xref "SPD:27/27A08" ; Alias "erg5" ; GO "GO:0000249; C-22 sterol desaturase activity
GO:0005783; endoplasmic reticulum
GO:0006696; ergosterol biosynthesis
GO:0005515; protein binding
GO:0006623; protein targeting to vacuole
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthesis
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Sre1; db_xref=PMID:15797383; cv=gene_ex; date=20070216 ||| term=orthologous to S. cerevisiae YMR015C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124" ; primary_name "erg5" ; product "C-22 sterol desaturase Erg5" ;
chromosome1 GeneDB CDS 2480147 2481645 . - . mRNA SPAC19A8.04 ; colour "2" ;
chromosome1 GeneDB CDS 2481978 2482104 . - . mRNA SPAC19A8.04 ; colour "2" ;
chromosome1 GeneDB misc_feature 2481646 2481660 . - . misc_feature unknown_2132 ; colour "6" ; note "ctaacatttttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2481972 2481977 . - . misc_feature unknown_2133 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2482103 2482162 . - . mRNA SPAC19A8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19A8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2482438 2482965 . - . mRNA SPAC19A8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19A8.03" ; systematic_id "SPAC19A8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2482966 2484746 . - . mRNA SPAC19A8.03 ; db_xref "SPD:36/36C09" ; systematic_id "SPAC19A8.03" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR110W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004438; phosphatidylinositol-3-phosphatase activity
GO:0016791; phosphoric monoester hydrolase activity
GO:0048017; inositol lipid-mediated signaling
GO:0023034; intracellular signaling cascade
GO:0046856; phosphoinositide dephosphorylation
GO:0016192; vesicle-mediated transport
GO:0046488; phosphatidylinositol metabolic process" ; gene "SPAC19A8.03" ; product "phosphatidylinositol-3-phosphatase, myotubularin family (predicted)" ; EC_number "3.1.3.-" ;
chromosome1 GeneDB CDS 2482966 2484045 . - . mRNA SPAC19A8.03 ; colour "7" ;
chromosome1 GeneDB CDS 2484091 2484666 . - . mRNA SPAC19A8.03 ; colour "7" ;
chromosome1 GeneDB CDS 2484723 2484746 . - . mRNA SPAC19A8.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 2484046 2484058 . - . misc_feature unknown_2134 ; colour "6" ; note "ctaatttatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2484085 2484090 . - . misc_feature unknown_2135 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2484667 2484677 . - . misc_feature unknown_2136 ; colour "6" ; note "ttaacaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2484717 2484722 . - . misc_feature unknown_2137 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2484745 2484911 . - . mRNA SPAC19A8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19A8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2485132 2485197 . - . mRNA SPAC19A8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19A8.02" ; systematic_id "SPAC19A8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2485198 2488937 . - . mRNA SPAC19A8.02 ; db_xref "SPD:39/39C06" ; systematic_id "SPAC19A8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YHR155W and YNL257C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC19A8.02" ; product "pleckstrin homology domain protein" ;
chromosome1 GeneDB CDS 2485198 2485537 . - . mRNA SPAC19A8.02 ; colour "10" ;
chromosome1 GeneDB CDS 2485636 2488937 . - . mRNA SPAC19A8.02 ; colour "10" ;
chromosome1 GeneDB misc_feature 2485538 2485552 . - . misc_feature unknown_2138 ; colour "6" ; note "ctaatctttttacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2485630 2485635 . - . misc_feature unknown_2139 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2488936 2489039 . - . mRNA SPAC19A8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19A8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2490083 2490862 . + . mRNA SPAC19A8.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19A8.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2490863 2494111 . + . mRNA SPAC19A8.01c ; systematic_id "SPAC19A8.01c" ; colour "7" ; gene "sec73 ||| sec7c ||| SPAC19A8.01c ||| SPAC23H3.01" ; Alias "sec73" ; db_xref "SPD:30/30C04" ; synonym "sec7c ||| SPAC23H3.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YPR095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006886; intracellular protein transport
GO:0006887; exocytosis
GO:0016192; vesicle-mediated transport" ; primary_name "sec73" ; product "guanyl-nucleotide exchange factor Sec73 (predicted)" ;
chromosome1 GeneDB CDS 2490863 2494111 . + . mRNA SPAC19A8.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 2492129 2492147 . + . misc_feature unknown_2140 ; note "nominal overlap with cosmid SPAC23H3" ;
chromosome1 GeneDB misc_feature 2492129 2492147 . - . misc_feature unknown_2141 ; note "nominal overlap with cosmid SPAC19A8" ;
chromosome1 GeneDB 3'-UTR 2494112 2494209 . + . mRNA SPAC19A8.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19A8.01c" ; systematic_id "SPAC19A8.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2494595 2494813 . - . mRNA SPAC23H3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H3.02c" ; systematic_id "SPAC23H3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2494814 2495318 . - . mRNA SPAC23H3.02c ; systematic_id "SPAC23H3.02c" ; colour "2" ; gene "ini1 ||| SPAC23H3.02c" ; Alias "ini1" ; db_xref "SPD:04/04H12" ; GO "GO:0005634; nucleus
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14762117; date=20070321 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:14762117; date=20100705 ||| term=orthologous to S. cerevisiae YPR094W; date=19700101 ||| term=complementation, functionally complemented by human Ini1; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ini1" ; product "RING finger-like protein Ini1" ;
chromosome1 GeneDB CDS 2494814 2494856 . - . mRNA SPAC23H3.02c ; colour "2" ;
chromosome1 GeneDB CDS 2494896 2495142 . - . mRNA SPAC23H3.02c ; colour "2" ;
chromosome1 GeneDB CDS 2495214 2495267 . - . mRNA SPAC23H3.02c ; colour "2" ;
chromosome1 GeneDB CDS 2495309 2495318 . - . mRNA SPAC23H3.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 2494857 2494870 . - . misc_feature unknown_2142 ; colour "6" ; note "ctcaccatttttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2494857 2494895 . - . intron SPAC23H3.02c ; Alias "ini1" ; db_xref "SPD:04/04H12" ; systematic_id "SPAC23H3.02c" ; primary_name "ini1" ; gene "ini1 ||| SPAC23H3.02c" ; note "confirmed, EMBL:AY27920" ;
chromosome1 GeneDB misc_feature 2494890 2494895 . - . misc_feature unknown_2143 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2495143 2495163 . - . misc_feature unknown_2144 ; colour "6" ; note "ctaatactcatgaatatacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2495143 2495213 . - . intron SPAC23H3.02c ; Alias "ini1" ; db_xref "SPD:04/04H12" ; systematic_id "SPAC23H3.02c" ; primary_name "ini1" ; gene "ini1 ||| SPAC23H3.02c" ; note "confirmed, EMBL:AY27920" ;
chromosome1 GeneDB misc_feature 2495208 2495213 . - . misc_feature unknown_2145 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2495268 2495281 . - . misc_feature unknown_2146 ; colour "6" ; note "ctaacgtttattag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2495268 2495308 . - . intron SPAC23H3.02c ; Alias "ini1" ; db_xref "SPD:04/04H12" ; systematic_id "SPAC23H3.02c" ; primary_name "ini1" ; gene "ini1 ||| SPAC23H3.02c" ; note "confirmed, EMBL:AY279206" ;
chromosome1 GeneDB misc_feature 2495303 2495308 . - . misc_feature unknown_2147 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_RNA 2495902 2496323 . + . misc_RNA SPNCRNA.558 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.558" ; synonym "SPNG2AF19" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB 3'-UTR 2496019 2496112 . - . mRNA SPAC23H3.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H3.03c" ; systematic_id "SPAC23H3.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2496113 2497426 . - . mRNA SPAC23H3.03c ; systematic_id "SPAC23H3.03c" ; colour "7" ; gene "npr2 ||| SPAC23H3.03c" ; Alias "npr2" ; db_xref "SPD:22/22H04" ; GO "GO:0032006; regulation of TOR signalling pathway
GO:0034198; cellular reponse to amino acid starvation
GO:0070881; regulation of proline transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL062W; date=19700101 ||| term=human NPRL2 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20090821 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "npr2" ; product "Npr2/3 complex subunit Npr2 (predicted)" ;
chromosome1 GeneDB CDS 2496113 2496697 . - . mRNA SPAC23H3.03c ; colour "7" ;
chromosome1 GeneDB CDS 2496739 2496875 . - . mRNA SPAC23H3.03c ; colour "7" ;
chromosome1 GeneDB CDS 2496919 2497426 . - . mRNA SPAC23H3.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 2496698 2496709 . - . misc_feature unknown_2148 ; colour "6" ; note "ctaattttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2496733 2496738 . - . misc_feature unknown_2149 ; colour "6" ; note "gtactc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2496876 2496888 . - . misc_feature unknown_2150 ; colour "6" ; note "ctaactttctaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2496913 2496918 . - . misc_feature unknown_2151 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2497425 2497672 . - . mRNA SPAC23H3.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H3.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2499035 2500236 . + . mRNA SPAC23H3.04 ; db_xref "SPD:19/19C03" ; systematic_id "SPAC23H3.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC1952.10C (paralog); date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:18488015; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005886; plasma membrane" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 2499035 2499159 . + . mRNA SPAC23H3.04 ; colour "10" ;
chromosome1 GeneDB CDS 2499161 2499353 . + . mRNA SPAC23H3.04 ; colour "10" ;
chromosome1 GeneDB CDS 2499443 2499824 . + . mRNA SPAC23H3.04 ; colour "10" ;
chromosome1 GeneDB CDS 2499875 2500236 . + . mRNA SPAC23H3.04 ; colour "10" ;
chromosome1 GeneDB misc_feature 2499354 2499359 . + . misc_feature unknown_2152 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2499430 2499442 . + . misc_feature unknown_2153 ; colour "6" ; note "ctaacatccttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2499825 2499830 . + . misc_feature unknown_2154 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2499863 2499874 . + . misc_feature unknown_2155 ; colour "6" ; note "ctaatattctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2500585 2500612 . - . mRNA SPAC23H3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H3.05c" ; systematic_id "SPAC23H3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2500613 2501809 . - . mRNA SPAC23H3.05c ; systematic_id "SPAC23H3.05c" ; colour "2" ; gene "swd1 ||| SPAC23H3.05c" ; Alias "swd1" ; db_xref "SPD:19/19B03" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0016571; histone methylation
GO:0051568; histone H3-K4 methylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=orthologous to S. cerevisiae YAR003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "swd1" ; product "Set1C complex subunit Swd1" ;
chromosome1 GeneDB CDS 2500613 2501809 . - . mRNA SPAC23H3.05c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2501808 2502072 . - . mRNA SPAC23H3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2502843 2502976 . + . mRNA SPAC23H3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2502977 2505264 . + . mRNA SPAC23H3.06 ; systematic_id "SPAC23H3.06" ; colour "7" ; gene "apl6 ||| SPAC23H3.06" ; Alias "apl6" ; db_xref "SPD:28/28C01" ; GO "GO:0030123; AP-3 adaptor complex
GO:0006896; Golgi to vacuole transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=adaptin family; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGR261C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "apl6" ; product "AP-3 adaptor complex subunit Apl6 (predicted)" ;
chromosome1 GeneDB CDS 2502977 2503957 . + . mRNA SPAC23H3.06 ; colour "7" ;
chromosome1 GeneDB CDS 2504008 2505264 . + . mRNA SPAC23H3.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 2503958 2503963 . + . misc_feature unknown_2156 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2503993 2504007 . + . misc_feature unknown_2157 ; colour "6" ; note "ctaacatgatattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2504367 2504372 . + . misc_feature unknown_2158 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2504766 2505436 . - . mRNA SPAC23H3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H3.07c" ; systematic_id "SPAC23H3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2505265 2505923 . + . mRNA SPAC23H3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H3.06" ; systematic_id "SPAC23H3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2505437 2505844 . - . mRNA SPAC23H3.07c ; systematic_id "SPAC23H3.07c" ; colour "7" ; gene "SPAC23H3.07c ||| mrp2" ; Alias "mrp2" ; db_xref "SPD:03/03B08" ; GO "GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrp2" ; product "mitochondrial ribosomal protein subunit S14 (predicted)" ;
chromosome1 GeneDB CDS 2505437 2505452 . - . mRNA SPAC23H3.07c ; colour "7" ;
chromosome1 GeneDB CDS 2505494 2505540 . - . mRNA SPAC23H3.07c ; colour "7" ;
chromosome1 GeneDB CDS 2505590 2505844 . - . mRNA SPAC23H3.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 2505453 2505465 . - . misc_feature unknown_2159 ; colour "6" ; note "ctaatccattcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2505453 2505493 . - . intron SPAC23H3.07c ; db_xref "SPD:03/03B08" ; systematic_id "SPAC23H3.07c" ; gene "SPAC23H3.07c ||| mrp2" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 2505488 2505493 . - . misc_feature unknown_2160 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2505541 2505553 . - . misc_feature unknown_2161 ; colour "6" ; note "ctgactatttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2505584 2505589 . - . misc_feature unknown_2162 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2505843 2505868 . - . mRNA SPAC23H3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2506299 2507306 . - . mRNA SPAC23H3.08c ; systematic_id "SPAC23H3.08c" ; colour "2" ; gene "bub3 ||| SPAC23H3.08c" ; Alias "bub3" ; db_xref "SPD:14/14H04" ; GO "GO:0007094; mitotic spindle checkpoint
; condensed nuclear chromosome kinetochore
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0005515; protein binding
GO:0033597; mitotic checkpoint complex" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "bub3" ; product "mitotic spindle checkpoint protein Bub3" ;
chromosome1 GeneDB CDS 2506299 2506939 . - . mRNA SPAC23H3.08c ; colour "2" ;
chromosome1 GeneDB CDS 2506985 2507306 . - . mRNA SPAC23H3.08c ; colour "2" ;
chromosome1 GeneDB misc_feature 2506940 2506951 . - . misc_feature unknown_2163 ; colour "6" ; note "ttaacattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2506979 2506984 . - . misc_feature unknown_2164 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2507707 2507912 . - . mRNA SPAC23H3.09c ; ID "SPAC23H3.09c" ; db_xref "SPD:17/17G08" ; systematic_id "SPAC23H3.09c" ; gene "SPAC23H3.09c ||| gly1" ; note "mRNA from AU006894" ;
chromosome1 GeneDB CDS_parts 2507913 2509043 . - . mRNA SPAC23H3.09c ; systematic_id "SPAC23H3.09c" ; colour "7" ; gene "SPAC23H3.09c ||| gly1" ; Alias "gly1" ; db_xref "KEGG:MAP00260; ||| SPD:17/17G08" ; GO "GO:0006545; glycine biosynthesis
GO:0006567; threonine catabolism
GO:0004793; threonine aldolase activity
GO:0006544; glycine metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL046C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gly1" ; product "threonine aldolase Gly1 (predicted)" ; EC_number "4.1.2.5" ;
chromosome1 GeneDB CDS 2507913 2509043 . - . mRNA SPAC23H3.09c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2509042 2509552 . - . mRNA SPAC23H3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 2510538 2510610 . + . tRNA SPATRNACYS.02 ; systematic_id "SPATRNACYS.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033455; GCA codon-amino acid adaptor activity" ; gene "SPATRNACYS.02" ; product "tRNA Cysteine" ; note "tRNA Cys anticodon GCA, Cove score 68.46" ;
chromosome1 GeneDB 5'-UTR 2511091 2511250 . + . mRNA SPAC23H3.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H3.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2511251 2512762 . + . mRNA SPAC23H3.10 ; systematic_id "SPAC23H3.10" ; colour "2" ; gene "ssr2 ||| SPAC23H3.10" ; Alias "ssr2" ; db_xref "SPD:24/24E03" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0006338; chromatin remodeling
GO:0016514; SWI/SNF complex
GO:0016586; RSC complex
GO:0010551; regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Swi/Snf RSC; cv=name_description; date=20061009 ||| term=zinc finger protein; date=19700101 ||| term=zf-ZZ type; date=19700101 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YJL176C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ssr2" ; product "SWI/SNF and RSC complex subunit Ssr2" ;
chromosome1 GeneDB CDS 2511251 2512762 . + . mRNA SPAC23H3.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2512763 2512846 . + . mRNA SPAC23H3.10 ; Alias "ssr2" ; ID "SPAC23H3.10" ; db_xref "SPD:24/24E03" ; systematic_id "SPAC23H3.10" ; primary_name "ssr2" ; gene "ssr2 ||| SPAC23H3.10" ; note "mRNA from SPD227" ;
chromosome1 GeneDB 3'-UTR 2512905 2512959 . - . mRNA SPAC23H3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H3.11c" ; systematic_id "SPAC23H3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2512960 2514849 . - . mRNA SPAC23H3.11c ; db_xref "SPD:26/26E03" ; systematic_id "SPAC23H3.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR143W and YPR159W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0015926; glucosidase activity
GO:0006078; 1,6-beta-glucan biosynthesis
GO:0031505; cell wall organization and biogenesis
GO:0016021; integral to membrane" ; gene "SPAC23H3.11c" ; product "glucosidase (predicted)" ;
chromosome1 GeneDB CDS 2512960 2514849 . - . mRNA SPAC23H3.11c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2514848 2514941 . - . mRNA SPAC23H3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2515051 2515192 . - . mRNA SPAC23H3.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H3.12c" ; systematic_id "SPAC23H3.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2515193 2515873 . - . mRNA SPAC23H3.12c ; db_xref "SPD:42/42H10" ; systematic_id "SPAC23H3.12c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL183C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0071805; potassium ion transmembrane transport
GO:0015992; proton transport" ; gene "SPAC23H3.12c" ; product "mitochondrial hydrogen/potassium transport system protein (predicted)" ;
chromosome1 GeneDB CDS 2515193 2515873 . - . mRNA SPAC23H3.12c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2515872 2515985 . - . mRNA SPAC23H3.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H3.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2516152 2516845 . - . mRNA SPAC23H3.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23H3.13c" ; systematic_id "SPAC23H3.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2516846 2518315 . - . mRNA SPAC23H3.13c ; systematic_id "SPAC23H3.13c" ; colour "2" ; gene "gpa2 ||| git8 ||| SPAC23H3.13c" ; Alias "gpa2" ; db_xref "SPD:23/23F07" ; synonym "git8" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER020W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505" ; GO "GO:0005525; GTP binding
GO:0004871; signal transducer activity
GO:0030437; sporulation (sensu Fungi)
GO:0031670; cellular response to nutrient
GO:0007188; G-protein signaling, coupled to cAMP nucleotide second messenger
GO:0045014; negative regulation of transcription by glucose
GO:0005834; heterotrimeric G-protein complex
GO:0007189; G-protein signaling, adenylate cyclase activating pathway
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003924; GTPase activity" ; primary_name "gpa2" ; product "heterotrimeric G protein alpha-2 subunit Gpa2" ;
chromosome1 GeneDB CDS 2516846 2517789 . - . mRNA SPAC23H3.13c ; colour "2" ;
chromosome1 GeneDB CDS 2518195 2518315 . - . mRNA SPAC23H3.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 2517790 2517807 . - . misc_feature unknown_2165 ; colour "6" ; note "ctaaccattgttttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2518189 2518194 . - . misc_feature unknown_2166 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2518314 2519232 . - . mRNA SPAC23H3.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H3.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2519010 2521358 . + . misc_RNA SPNCRNA.197 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.197" ; synonym "SPNG459" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2521543 2521697 . + . mRNA SPAC23H3.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H3.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2521698 2523281 . + . mRNA SPAC23H3.14 ; db_xref "SPD:25/25E03" ; systematic_id "SPAC23H3.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR114C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006892; post-Golgi vesicle-mediated transport" ; gene "SPAC23H3.14" ; product "LAlv9 family protein, involved in post Golgi transport (predicted)" ;
chromosome1 GeneDB CDS 2521698 2521750 . + . mRNA SPAC23H3.14 ; colour "7" ;
chromosome1 GeneDB CDS 2521809 2521917 . + . mRNA SPAC23H3.14 ; colour "7" ;
chromosome1 GeneDB CDS 2522034 2523281 . + . mRNA SPAC23H3.14 ; colour "7" ;
chromosome1 GeneDB misc_feature 2521751 2521756 . + . misc_feature unknown_2167 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2521794 2521808 . + . misc_feature unknown_2168 ; colour "6" ; note "ctaacgtagttgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2521918 2521923 . + . misc_feature unknown_2169 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2522019 2522033 . + . misc_feature unknown_2170 ; colour "6" ; note "ctaatgcaattccag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2523372 2523628 . - . mRNA SPAC23H3.15c ; ID "SPAC23H3.15c" ; db_xref "SPD:14/14A06" ; systematic_id "SPAC23H3.15c" ; gene "SPAC23H3.15c ||| SPAC25H1.01c" ; note "mRNA from SPD241" ;
chromosome1 GeneDB CDS_parts 2523629 2524606 . - . mRNA SPAC23H3.15c ; db_xref "SPD:14/14A06" ; systematic_id "SPAC23H3.15c" ; synonym "SPAC25H1.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; GO "GO:0034599; cellular response to oxidative stress" ; colour "8" ; gene "SPAC23H3.15c ||| SPAC25H1.01c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2523629 2524606 . - . mRNA SPAC23H3.15c ; colour "8" ;
chromosome1 GeneDB misc_feature 2524346 2524839 . + . misc_feature unknown_2171 ; note "nominal overlap with cosmid SPAC25H1 and cosmid SPAC23H3" ;
chromosome1 GeneDB 5'-UTR 2524605 2524622 . - . mRNA SPAC23H3.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23H3.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2525777 2525916 . + . mRNA SPAC25H1.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25H1.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2525917 2527311 . + . mRNA SPAC25H1.02 ; systematic_id "SPAC25H1.02" ; colour "7" ; gene "jmj1 ||| SPAC25H1.02" ; Alias "jmj1" ; db_xref "SPD:21/21F01" ; GO "GO:0045449; regulation of transcription
GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0032452; histone demethylase activity
GO:0016577; histone demethylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=jmjC domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "jmj1" ; product "histone demethylase Jmj1 (predicted)" ; reserved_name "jmj1" ;
chromosome1 GeneDB CDS 2525917 2527311 . + . mRNA SPAC25H1.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2527312 2527427 . + . mRNA SPAC25H1.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25H1.02" ; systematic_id "SPAC25H1.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2528030 2528037 . + . mRNA SPAC25H1.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25H1.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2528038 2528644 . + . mRNA SPAC25H1.03 ; systematic_id "SPAC25H1.03" ; colour "2" ; gene "mug66 ||| SPAC25H1.03" ; Alias "mug66" ; db_xref "SPD:06/06G07" ; synonym "mug66" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030437; sporulation (sensu Fungi)
GO:0007127; meiosis I
GO:0007126; meiosis" ; primary_name "mug66" ; product "meiotically upregulated gene Mug66" ;
chromosome1 GeneDB CDS 2528038 2528101 . + . mRNA SPAC25H1.03 ; colour "2" ;
chromosome1 GeneDB CDS 2528154 2528644 . + . mRNA SPAC25H1.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 2528102 2528107 . + . misc_feature unknown_2172 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2528142 2528153 . + . misc_feature unknown_2173 ; colour "6" ; note "ctaatcctttag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 2529085 2529819 . + . mRNA SPAC25H1.04 ; systematic_id "SPAC25H1.04" ; colour "10" ; gene "SPAC25H1.04 ||| mug105" ; db_xref "SPD:08/08G12" ; Alias "mug105" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0070647; protein modification by small-protein conjugation or removal" ; primary_name "mug105" ; product "ubiquitin-fold modifier-specific protease (predicted)" ;
chromosome1 GeneDB CDS 2529085 2529819 . + . mRNA SPAC25H1.04 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 2529820 2529901 . + . mRNA SPAC25H1.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25H1.04" ; systematic_id "SPAC25H1.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2530138 2530791 . + . mRNA SPAC25H1.05 ; Alias "meu29" ; db_xref "SPD:42/42G02" ; systematic_id "SPAC25H1.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101" ; colour "8" ; primary_name "meu29" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2530138 2530791 . + . mRNA SPAC25H1.05 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 2530792 2531204 . + . mRNA SPAC25H1.05 ; ID "SPAC25H1.05" ; db_xref "SPD:42/42G02 ||| EMBL:AB054313" ; systematic_id "SPAC25H1.05" ;
chromosome1 GeneDB 5'-UTR 2531276 2531452 . + . mRNA SPAC25H1.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25H1.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2531453 2532679 . + . mRNA SPAC25H1.06 ; systematic_id "SPAC25H1.06" ; colour "2" ; gene "SPAC25H1.06" ; db_xref "SPD:22/22B11" ; Alias "pcf3" ; GO "GO:0033186; CAF-1 complex
GO:0000790; nuclear chromatin
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005634; nucleus
GO:0006335; DNA replication-dependent nucleosome assembly
GO:0070829; heterochromatin maintenance
GO:0035067; negative regulation of histone acetylation
GO:0090053; positive regulation of chromatin silencing at centromere
GO:0090055; positive regulation of chromatin silencing at mating-type cassette
GO:0051574; positive regulation of histone H3-K9 methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR195C; db_xref=PMID:18761674; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CAF1p48 ortholog; db_xref=PMID:18761674; date=20090723 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18761674; date=20090723 ||| term=misc functional group, histone chaperone; db_xref=PMID:18761674; cv=m_f_g; date=20090723 ||| term=name description, Pombe CAF-1 First subunit; db_xref=PMID:18761674; date=20090723 ||| term=misc, destabilized in the absence of Pcf1; db_xref=PMID:18761674; date=20090723" ; primary_name "pcf3" ; product "CAF assembly factor (CAF-1) complex subunit C, Pcf3" ;
chromosome1 GeneDB CDS 2531453 2532679 . + . mRNA SPAC25H1.06 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2532680 2532815 . + . mRNA SPAC25H1.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25H1.06" ; systematic_id "SPAC25H1.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2532904 2533214 . - . mRNA SPAC25H1.10c ; systematic_id "SPAC25H1.10c" ; colour "7" ; gene "atp19 ||| SPAC25H1.10c" ; Alias "atp19" ; db_xref "PMID:18488015" ; GO "GO:0000276; mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0046933; hydrogen ion transporting ATP synthase activity, rotational mechanism
GO:0015986; ATP synthesis coupled proton transport" ; controlled_curation "term=orthologous to S. cerevisiae YOL077W-A; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; primary_name "atp19" ; product "F0-ATPase subunit K (predicted)" ;
chromosome1 GeneDB CDS 2532904 2532928 . - . mRNA SPAC25H1.10c ; colour "7" ;
chromosome1 GeneDB CDS 2532991 2533127 . - . mRNA SPAC25H1.10c ; colour "7" ;
chromosome1 GeneDB CDS 2533170 2533214 . - . mRNA SPAC25H1.10c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2533805 2533820 . + . mRNA SPAC25H1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25H1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2533821 2536478 . + . mRNA SPAC25H1.07 ; systematic_id "SPAC25H1.07" ; colour "7" ; gene "SPAC25H1.07 ||| emc1" ; db_xref "SPD:47/47A10" ; Alias "emc1" ; GO "GO:0034975; protein folding in the endoplasmic reticulum
GO:0072546; ER membrane protein complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL045C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "emc1" ; product "ER membrane protein complex subunit Emc1 (predicted)" ;
chromosome1 GeneDB CDS 2533821 2536478 . + . mRNA SPAC25H1.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2536479 2536556 . + . mRNA SPAC25H1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25H1.07" ; systematic_id "SPAC25H1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2536605 2536700 . - . mRNA SPAC25H1.08c ; ID "SPAC25H1.08c" ; db_xref "SPD:19/19B10" ; systematic_id "SPAC25H1.08c" ; gene "SPAC25H1.08c" ; note "mRNA from AU007971" ;
chromosome1 GeneDB CDS_parts 2536701 2537900 . - . mRNA SPAC25H1.08c ; db_xref "SPD:19/19B10" ; systematic_id "SPAC25H1.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YIR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0000027; ribosomal large subunit assembly and maintenance" ; gene "SPAC25H1.08c" ; product "ribosome biogenesis protein Sqt1 (predicted)" ;
chromosome1 GeneDB CDS 2536701 2537900 . - . mRNA SPAC25H1.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2537901 2537929 . - . mRNA SPAC25H1.08c ; ID "SPAC25H1.08c" ; systematic_id "SPAC25H1.08c" ; gene "SPAC25H1.08c" ; note "mRNA from AU012110" ;
chromosome1 GeneDB 5'-UTR 2538102 2538460 . + . mRNA SPAC25H1.09 ; ID "SPAC25H1.09" ; systematic_id "SPAC25H1.09" ; note "mRNA from AU007561" ;
chromosome1 GeneDB misc_feature 2538245 2538565 . + . misc_feature unknown_2174 ; note "nominal overlap with cosmid SPAC25H1 and cosmid SPAC4A8" ;
chromosome1 GeneDB CDS_parts 2538461 2540002 . + . mRNA SPAC25H1.09 ; systematic_id "SPAC25H1.09" ; colour "2" ; db_xref "SPD:25/25A03" ; Alias "mde5" ; synonym "meu30 ||| SPAC4A8.01" ; GO "GO:0009986; cell surface
GO:0004556; alpha-amylase activity
GO:0005509; calcium ion binding
GO:0044275; cellular carbohydrate catabolism
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "mde5" ; product "alpha-amylase homolog Mde5" ; EC_number "3.2.1.1" ;
chromosome1 GeneDB CDS 2538461 2540002 . + . mRNA SPAC25H1.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 2538461 2538565 . + . misc_feature unknown_2175 ; note "SPAC25H1.09, see SPAC4A8.01 for full length mde5" ;
chromosome1 GeneDB CDS_parts 2540247 2540725 . - . mRNA SPAC4A8.02c ; db_xref "SPD:04/04D08" ; systematic_id "SPAC4A8.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100305 ||| term=species distribution, conserved in Fungi; date=20100305 ||| term=species distribution, conserved in Eukaryotes; date=20100305 ||| term=species distribution, conserved in Metazoa; date=20100305 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; colour "10" ; GO "GO:0045132; meiotic chromosome segregation" ; gene "SPAC4A8.02c" ; product "conserved protein, UPF0047 family" ;
chromosome1 GeneDB CDS 2540247 2540642 . - . mRNA SPAC4A8.02c ; colour "10" ;
chromosome1 GeneDB CDS 2540693 2540725 . - . mRNA SPAC4A8.02c ; colour "10" ;
chromosome1 GeneDB misc_feature 2540643 2540661 . - . misc_feature unknown_2176 ; colour "6" ; note "ctaactcaattgaatttag, splice branch and acceptor sequ ence" ;
chromosome1 GeneDB misc_feature 2540687 2540692 . - . misc_feature unknown_2177 ; colour "6" ; note "gtaact, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2540843 2541286 . - . mRNA SPAC4A8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4A8.03c" ; systematic_id "SPAC4A8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2541287 2542438 . - . mRNA SPAC4A8.03c ; systematic_id "SPAC4A8.03c" ; colour "2" ; gene "ptc4 ||| SPAC4A8.03c" ; Alias "ptc4" ; db_xref "SPD:18/18B10" ; GO "GO:0000329; vacuolar membrane
GO:0004722; protein phosphatase type 2C activity
GO:0006470; protein amino acid dephosphorylation
GO:0032889; regulation of vacuole fusion, non- autophagic
GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10436019; date=19700101 ||| term=orthologous to S. cerevisiae YCR079W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=phenotype, cell morphology, small cells; qualifier=deletion|in_minimal_media; db_xref=PMID:7859738; date=20101126 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:17085965; date=20101126" ; primary_name "ptc4" ; product "protein phosphatase 2C Ptc4" ; EC_number "3.1.3.16" ;
chromosome1 GeneDB CDS 2541287 2542438 . - . mRNA SPAC4A8.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 2541287 2542306 . - . misc_feature unknown_2178 ; note "possible alternative start, waiting for confirmation" ;
chromosome1 GeneDB 5'-UTR 2542437 2542495 . - . mRNA SPAC4A8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4A8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2544866 2545349 . + . mRNA SPAC4A8.04 ; Alias "isp6" ; ID "SPAC4A8.04" ; db_xref "EMBL:D14063" ; systematic_id "SPAC4A8.04" ; primary_name "isp6" ;
chromosome1 GeneDB CDS_parts 2545350 2546753 . + . mRNA SPAC4A8.04 ; systematic_id "SPAC4A8.04" ; colour "2" ; db_xref "SPD:21/21F12" ; Alias "isp6" ; synonym "prb1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed in response to nitrogen starvation; cv=gene_ex; db_xref=PMID:11872168; date=20060516 ||| term=orthologous to S. cerevisiae YEL060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008236; serine-type peptidase activity
GO:0006401; RNA catabolism
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0006995; cellular response to nitrogen starvation
GO:0000747; conjugation with cellular fusion
GO:0051603; proteolysis during cellular protein catabolism
GO:0051171; regulation of nitrogen metabolism
GO:0007033; vacuole organization and biogenesis
GO:0000324; vacuole" ; primary_name "isp6" ; product "vacuolar serine protease Isp6" ; EC_number "3.4.24.- ||| 3.4.21.-" ;
chromosome1 GeneDB CDS 2545350 2546753 . + . mRNA SPAC4A8.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2546754 2546979 . + . mRNA SPAC4A8.04 ; Alias "isp6" ; ID "SPAC4A8.04" ; db_xref "EMBL:D14063 ||| SPD:21/21F12" ; systematic_id "SPAC4A8.04" ; primary_name "isp6" ;
chromosome1 GeneDB 3'-UTR 2547336 2547350 . - . mRNA SPAC4A8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4A8.05c" ; systematic_id "SPAC4A8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2547351 2553665 . - . mRNA SPAC4A8.05c ; systematic_id "SPAC4A8.05c" ; colour "2" ; gene "myp2 ||| myo3 ||| SPAC4A8.05c" ; Alias "myp2" ; db_xref "SPD:34/34C05" ; synonym "myo3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; qualifier=deletion|during_nutrient_limitation; db_xref=PMID:9398685; date=20100705 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|during_nutrient_limitation; db_xref=PMID:9398685; date=20100705 ||| term=phenotype, cell morphology, branched; qualifier=deletion|during_nutrient_limitation; db_xref=PMID:9398685; date=20100705 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YHR023W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=human MYH9 and MYH11 ortholog; date=20100218" ; GO "GO:0016460; myosin II complex
GO:0033205; cell cycle cytokinesis
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003779; actin binding
GO:0003774; motor activity
GO:0005826; contractile ring
GO:0000915; cytokinesis, contractile ring formation
GO:0005524; ATP binding" ; primary_name "myp2" ; product "myosin II heavy chain Myo3" ;
chromosome1 GeneDB CDS 2547351 2553665 . - . mRNA SPAC4A8.05c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2553825 2554012 . - . mRNA SPAC4A8.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4A8.06c" ; systematic_id "SPAC4A8.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2554013 2555749 . - . mRNA SPAC4A8.06c ; db_xref "SPD:35/35G12" ; systematic_id "SPAC4A8.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC4A8.06c" ; product "esterase/lipase (predicted)" ;
chromosome1 GeneDB CDS 2554013 2555749 . - . mRNA SPAC4A8.06c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2555748 2555915 . - . mRNA SPAC4A8.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4A8.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2556632 2556772 . - . mRNA SPAC4A8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4A8.07c" ; systematic_id "SPAC4A8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2556773 2558297 . - . mRNA SPAC4A8.07c ; db_xref "SPD:24/24G05" ; systematic_id "SPAC4A8.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR171C and YLR260W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005794; Golgi apparatus
GO:0005783; endoplasmic reticulum
GO:0017050; D-erythro-sphingosine kinase activity
GO:0004143; diacylglycerol kinase activity
GO:0019722; calcium-mediated signaling
GO:0007205; protein kinase C activation
GO:0046520; sphingoid biosynthetic process" ; gene "SPAC4A8.07c" ; product "sphingoid long chain base kinase (predicted)" ; EC_number "2.7.1.107" ;
chromosome1 GeneDB CDS 2556773 2557848 . - . mRNA SPAC4A8.07c ; colour "7" ;
chromosome1 GeneDB CDS 2557938 2558123 . - . mRNA SPAC4A8.07c ; colour "7" ;
chromosome1 GeneDB CDS 2558183 2558297 . - . mRNA SPAC4A8.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 2557849 2557863 . - . misc_feature unknown_2179 ; colour "6" ; note "ctaaccacctgaaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2557932 2557937 . - . misc_feature unknown_2180 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2558124 2558136 . - . misc_feature unknown_2181 ; colour "6" ; note "ttaacaataacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2558177 2558182 . - . misc_feature unknown_2182 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2558296 2558336 . - . mRNA SPAC4A8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4A8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2558600 2561714 . - . mRNA SPAC4A8.08c ; systematic_id "SPAC4A8.08c" ; colour "2" ; obsolete_name "vas1" ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:47/47H03" ; Alias "vrs2" ; synonym "vas2 ||| ValRS2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR094W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, inviable; db_xref=PMID:20106903; cv=phenotype; date=20100201 ||| term=protein sequence feature, mitochondrial signal sequence; cv=sequence_feature; residue=1-32; db_xref=PMID:20106903; date=20100302" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004832; valine-tRNA ligase activity
GO:0006438; valyl-tRNA aminoacylation
GO:0032543; mitochondrial translation" ; primary_name "vrs2" ; product "mitochondrial valine-tRNA ligase Vrs2/Vas2" ; EC_number "6.1.1.9" ;
chromosome1 GeneDB CDS 2558600 2558893 . - . mRNA SPAC4A8.08c ; colour "2" ;
chromosome1 GeneDB CDS 2558942 2559214 . - . mRNA SPAC4A8.08c ; colour "2" ;
chromosome1 GeneDB CDS 2559254 2561080 . - . mRNA SPAC4A8.08c ; colour "2" ;
chromosome1 GeneDB CDS 2561121 2561210 . - . mRNA SPAC4A8.08c ; colour "2" ;
chromosome1 GeneDB CDS 2561255 2561371 . - . mRNA SPAC4A8.08c ; colour "2" ;
chromosome1 GeneDB CDS 2561410 2561562 . - . mRNA SPAC4A8.08c ; colour "2" ;
chromosome1 GeneDB CDS 2561616 2561714 . - . mRNA SPAC4A8.08c ; colour "2" ;
chromosome1 GeneDB misc_feature 2558894 2558908 . - . misc_feature unknown_2183 ; colour "6" ; note "ttaacattcttgtag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2558936 2558941 . - . misc_feature unknown_2184 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2559215 2559226 . - . misc_feature unknown_2185 ; colour "6" ; note "ttaacaaactag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2559248 2559253 . - . misc_feature unknown_2186 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2561081 2561090 . - . misc_feature unknown_2187 ; colour "6" ; note "ctaataatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2561115 2561120 . - . misc_feature unknown_2188 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2561211 2561226 . - . misc_feature unknown_2189 ; colour "6" ; note "cttacatctgtttcag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 2561249 2561254 . - . misc_feature unknown_2190 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2561372 2561384 . - . misc_feature unknown_2191 ; colour "6" ; note "ctaacaattgaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2561404 2561409 . - . misc_feature unknown_2192 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2561713 2561801 . - . mRNA SPAC4A8.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4A8.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snRNA 2562085 2562559 . - . snRNA SPSNRNA.06 ; Alias "snu6" ; db_xref "RFAM:RF00026 ||| EMBL:X14196" ; systematic_id "SPSNRNA.06" ; synonym "U6snRNA ||| U6" ; primary_name "snu6" ; product "small nuclear RNA U6" ;
chromosome1 GeneDB intron 2562323 2562373 . - . intron SPSNRNA.06 ; Alias "snu6" ; db_xref "EMBL:X14196" ; systematic_id "SPSNRNA.06" ; primary_name "snu6" ; note "confirmed intron" ;
chromosome1 GeneDB 3'-UTR 2562736 2563010 . - . mRNA SPAC4A8.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4A8.09c" ; systematic_id "SPAC4A8.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2563011 2563963 . - . mRNA SPAC4A8.09c ; systematic_id "SPAC4A8.09c" ; colour "2" ; gene "cwf21 ||| SPAC4A8.09c" ; note "annexin v-binding protein?" ; Alias "cwf21" ; db_xref "SPD:13/13D08" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR482C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cwf21" ; product "complexed with Cdc5 protein Cwf21" ;
chromosome1 GeneDB CDS 2563011 2563889 . - . mRNA SPAC4A8.09c ; colour "2" ;
chromosome1 GeneDB CDS 2563961 2563963 . - . mRNA SPAC4A8.09c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2563962 2564221 . - . mRNA SPAC4A8.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4A8.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2564629 2566800 . + . mRNA SPAC4A8.10 ; db_xref "SPD:49/49D09" ; systematic_id "SPAC4A8.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL109C and YDR444W and YGL144C and YOR059C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0005811; lipid particle
GO:0016298; lipase activity
GO:0006629; lipid metabolism
GO:0044242; cellular lipid catabolic process" ; gene "SPAC4A8.10" ; product "lipase (predicted)" ;
chromosome1 GeneDB CDS 2564629 2566800 . + . mRNA SPAC4A8.10 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2566801 2566806 . + . mRNA SPAC4A8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4A8.10" ; systematic_id "SPAC4A8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2566866 2567039 . - . mRNA SPAC4A8.11c ; Alias "fas2" ; ID "SPAC4A8.11c" ; db_xref "SPD:49/49H08" ; systematic_id "SPAC4A8.11c" ; primary_name "fas2" ; gene "fas2 ||| lsd1 ||| SPAC4A8.11c" ; note "mRNA from AU010390" ;
chromosome1 GeneDB CDS_parts 2567040 2572568 . - . mRNA SPAC4A8.11c ; systematic_id "SPAC4A8.11c" ; colour "2" ; gene "fas2 ||| lsd1 ||| SPAC4A8.11c" ; Alias "fas2" ; db_xref "SPD:49/49H08" ; synonym "lsd1" ; GO "GO:0005835; fatty acid synthase complex
GO:0004315; 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0004321; fatty-acyl-CoA synthase activity
GO:0008897; phosphopantetheinyltransferase activity
GO:0006633; fatty acid biosynthesis
GO:0004316; 3-oxoacyl-[acyl-carrier-protein] reductase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL231W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Large and Small Daughter nuclei; date=20100727 ||| term=warning, gene name conflict; date=20100727" ; primary_name "fas2" ; product "fatty acid synthase alpha subunit Lsd1" ; EC_number "2.3.1.41" ;
chromosome1 GeneDB CDS 2567040 2572568 . - . mRNA SPAC4A8.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2572567 2572582 . - . mRNA SPAC4A8.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4A8.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2573294 2573419 . - . mRNA SPAC4A8.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4A8.12c" ; systematic_id "SPAC4A8.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2573420 2574473 . - . mRNA SPAC4A8.12c ; systematic_id "SPAC4A8.12c" ; colour "2" ; gene "sds22 ||| SPAC4A8.12c" ; Alias "sds22" ; db_xref "SPD:49/49A05" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008287; protein serine/threonine phosphatase complex
GO:0071862; protein phosphatase type1 activator activity
GO:0051457; maintenance of protein location in nucleus
GO:0000070; mitotic sister chromatid segregation
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; db_xref=PMID:1846086; date=19700101 ||| term=orthologous to S. cerevisiae YKL193C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "sds22" ; product "protein phosphatase regulatory subunit Sds22" ;
chromosome1 GeneDB CDS 2573420 2574295 . - . mRNA SPAC4A8.12c ; colour "2" ;
chromosome1 GeneDB CDS 2574351 2574473 . - . mRNA SPAC4A8.12c ; colour "2" ;
chromosome1 GeneDB misc_feature 2574296 2574313 . - . misc_feature unknown_2193 ; colour "6" ; note "ctaaccaacttaatatag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB misc_feature 2574345 2574350 . - . misc_feature unknown_2194 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2574472 2574506 . - . mRNA SPAC4A8.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4A8.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2574726 2575105 . - . mRNA SPAC4A8.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4A8.13c" ; systematic_id "SPAC4A8.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2575106 2575924 . - . mRNA SPAC4A8.13c ; systematic_id "SPAC4A8.13c" ; colour "2" ; gene "pts1 ||| SPAC4A8.13c" ; Alias "pts1" ; db_xref "SPD:41/41F07" ; GO "GO:0005634; nucleus
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0000278; mitotic cell cycle
GO:0043161; proteasomal ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR103W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pts1" ; product "20S proteasome component beta 5" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB CDS 2575106 2575924 . - . mRNA SPAC4A8.13c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2575923 2575938 . - . mRNA SPAC4A8.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4A8.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2576377 2576500 . + . mRNA SPAC4A8.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4A8.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2576501 2577772 . + . mRNA SPAC4A8.14 ; systematic_id "SPAC4A8.14" ; colour "7" ; gene "SPAC4A8.14" ; note "prs1 is the primary name for SPBC19C7.06 using unified nomenclature for tRNA ligases" ; obsolete_name "prs1" ; db_xref "SPD:50/50E09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL068W and YER099C and YHL011C and YKL181W and YOL061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0005737; cytoplasm
GO:0004749; ribose phosphate diphosphokinase activity
GO:0006189; 'de novo' IMP biosynthesis
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0000105; histidine biosynthesis
GO:0006166; purine ribonucleoside salvage
GO:0000162; tryptophan biosynthesis" ; product "ribose-phosphate pyrophosphokinase (predicted)" ; EC_number "2.7.6.1" ;
chromosome1 GeneDB CDS 2576501 2577577 . + . mRNA SPAC4A8.14 ; colour "7" ;
chromosome1 GeneDB CDS 2577620 2577772 . + . mRNA SPAC4A8.14 ; colour "7" ;
chromosome1 GeneDB misc_feature 2577578 2577583 . + . misc_feature unknown_2195 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2577605 2577619 . + . misc_feature unknown_2196 ; colour "6" ; note "ctaacgtaacaatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 2577773 2577916 . + . mRNA SPAC4A8.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4A8.14" ; systematic_id "SPAC4A8.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 2578426 2578524 . + . tRNA SPATRNAILE.02 ; systematic_id "SPATRNAILE.02" ; GO "GO:0005737; cytoplasm
GO:0033409; TAT codon-amino acid adaptor activity
GO:0006414; translational elongation" ; gene "SPATRNAILE.02" ; product "tRNA Isoleucine" ; note "tRNA Ile anticodon TAT, Cove score 59.62" ;
chromosome1 GeneDB intron 2578464 2578488 . + . intron SPATRNAILE.02 ; systematic_id "SPATRNAILE.02" ; note "intron tRNA Ile anticodon TAT" ;
chromosome1 GeneDB 3'-UTR 2578956 2578989 . - . mRNA SPAC4A8.15c ; Alias "cdc3" ; ID "SPAC4A8.15c" ; db_xref "SPD:41/41C06" ; systematic_id "SPAC4A8.15c" ; primary_name "cdc3" ; gene "cdc3 ||| SPAC4A8.15c" ; note "mRNA from AU008190" ;
chromosome1 GeneDB CDS_parts 2578990 2579478 . - . mRNA SPAC4A8.15c ; systematic_id "SPAC4A8.15c" ; colour "2" ; gene "cdc3 ||| SPAC4A8.15c" ; Alias "cdc3" ; db_xref "SPD:41/41C06" ; GO "GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0030041; actin filament polymerization
GO:0005085; guanyl-nucleotide exchange factor activity
GO:0003785; actin monomer binding
GO:0030479; actin cortical patch
GO:0032220; plasma membrane fusion during cytogamy
GO:0005937; mating projection
GO:0071519; actin filament bundle assembly involved in actomyosin contractile ring formation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated dumbbell; db_xref=PMID:8207058; date=20100729 ||| term=orthologous to S. cerevisiae YOR122C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cdc3" ; product "profilin" ;
chromosome1 GeneDB CDS 2578990 2579027 . - . mRNA SPAC4A8.15c ; colour "2" ;
chromosome1 GeneDB CDS 2579084 2579416 . - . mRNA SPAC4A8.15c ; colour "2" ;
chromosome1 GeneDB CDS 2579466 2579478 . - . mRNA SPAC4A8.15c ; colour "2" ;
chromosome1 GeneDB intron 2579028 2579083 . - . intron SPAC4A8.15c ; Alias "cdc3" ; db_xref "SPD:41/41C06" ; systematic_id "SPAC4A8.15c" ; primary_name "cdc3" ; gene "cdc3 ||| SPAC4A8.15c" ; note "confirmed intron" ;
chromosome1 GeneDB intron 2579417 2579465 . - . intron SPAC4A8.15c ; Alias "cdc3" ; db_xref "SPD:41/41C06" ; systematic_id "SPAC4A8.15c" ; primary_name "cdc3" ; gene "cdc3 ||| SPAC4A8.15c" ; note "confirmed intron" ;
chromosome1 GeneDB 5'-UTR 2579479 2579514 . - . mRNA SPAC4A8.15c ; Alias "cdc3" ; ID "SPAC4A8.15c" ; systematic_id "SPAC4A8.15c" ; primary_name "cdc3" ; gene "cdc3 ||| SPAC4A8.15c" ; note "mRNA from AU008462" ;
chromosome1 GeneDB 3'-UTR 2580100 2580219 . - . mRNA SPAC4A8.16c ; Alias "tif33" ; ID "SPAC4A8.16c" ; db_xref "SPD:49/49F04" ; systematic_id "SPAC4A8.16c" ; primary_name "tif33" ; gene "tif33 ||| SPAC4A8.16c ||| SPAC823.01c" ; note "mRNA from SPD140" ;
chromosome1 GeneDB CDS_parts 2580220 2582976 . - . mRNA SPAC4A8.16c ; systematic_id "SPAC4A8.16c" ; colour "2" ; gene "tif33 ||| SPAC4A8.16c ||| SPAC823.01c" ; Alias "tif33" ; db_xref "SPD:49/49F04" ; obsolete_name "SPAC1E11.01c" ; synonym "SPAC823.01c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR309C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
; translation initiation factor activity
GO:0006413; translational initiation" ; primary_name "tif33" ; product "translation initiation factor eIF3c" ;
chromosome1 GeneDB CDS 2580220 2582976 . - . mRNA SPAC4A8.16c ; colour "2" ;
chromosome1 GeneDB misc_feature 2581504 2582139 . + . misc_feature unknown_2197 ; note "nominal overlap with SPAC4A8 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 2581775 2582139 . + . misc_feature unknown_2198 ; note "nominal overlap with cosmid SPAC1E11, EM:Z98599 S.pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 2583804 2583973 . + . mRNA SPAC823.02 ; systematic_id "SPAC823.02" ; colour "8" ; gene "SPAC823.02" ; note "confirmed intron" ; obsolete_name "SPAC1E11.02" ; db_xref "SPD:01/01A06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2583804 2583902 . + . mRNA SPAC823.02 ; colour "8" ;
chromosome1 GeneDB CDS 2583941 2583973 . + . mRNA SPAC823.02 ; colour "8" ;
chromosome1 GeneDB misc_feature 2583903 2583908 . + . misc_feature unknown_2199 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 2583903 2583940 . + . intron SPAC823.02 ; db_xref "SPD:01/01A06" ; systematic_id "SPAC823.02" ; gene "SPAC823.02" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2583927 2583940 . + . misc_feature unknown_2200 ; colour "6" ; note "ttaacatcttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2583974 2584233 . + . mRNA SPAC823.02 ; ID "SPAC823.02" ; db_xref "SPD:01/01A06" ; systematic_id "SPAC823.02" ; gene "SPAC823.02" ; note "mRNA from AU012274" ;
chromosome1 GeneDB 5'-UTR 2585176 2585754 . + . mRNA SPAC823.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC823.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2585755 2587406 . + . mRNA SPAC823.03 ; systematic_id "SPAC823.03" ; colour "2" ; gene "ppk15 ||| SPAC823.03" ; Alias "ppk15" ; db_xref "SPD:34/34F09" ; obsolete_name "SPAC1E11.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YJL141C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "ppk15" ; product "serine/threonine protein kinase Ppk15 (predicted)" ;
chromosome1 GeneDB CDS 2585755 2585943 . + . mRNA SPAC823.03 ; colour "2" ;
chromosome1 GeneDB CDS 2585991 2587406 . + . mRNA SPAC823.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 2585944 2585949 . + . misc_feature unknown_2201 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2585975 2585990 . + . misc_feature unknown_2202 ; colour "6" ; note "ctaattaaacatatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2587407 2587430 . + . mRNA SPAC823.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC823.03" ; systematic_id "SPAC823.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2587729 2588620 . + . mRNA SPAC823.04 ; db_xref "SPD:09/09D04" ; systematic_id "SPAC823.04" ; GO "GO:0000469; cleavage involved in rRNA processing
GO:0000462; maturation of SSU-rRNA from tricistronic rRNA rtransscript (SSU-rRNA, 5.8S rRNA, LSU- rRNA
GO:0042274; ribosomal small subnit biogenesis" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR287C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; colour "7" ; product "rRNA processing protein Rrp36, DUF947 family (predicted)" ;
chromosome1 GeneDB CDS 2587729 2587897 . + . mRNA SPAC823.04 ; colour "7" ;
chromosome1 GeneDB CDS 2587952 2588028 . + . mRNA SPAC823.04 ; colour "7" ;
chromosome1 GeneDB CDS 2588031 2588143 . + . mRNA SPAC823.04 ; colour "7" ;
chromosome1 GeneDB CDS 2588182 2588620 . + . mRNA SPAC823.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 2587898 2587903 . + . misc_feature unknown_2203 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2588696 2588862 . - . mRNA SPAC823.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC823.05c" ; systematic_id "SPAC823.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2588863 2589820 . - . mRNA SPAC823.05c ; systematic_id "SPAC823.05c" ; colour "7" ; gene "tlg2 ||| SPAC823.05c" ; Alias "tlg2" ; db_xref "SPD:13/13E10" ; GO "GO:0005484; SNAP receptor activity
GO:0016192; vesicle-mediated transport
GO:0010811; positive regulation of cell substrate adhesion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, adhesion defects, cell-substrate adhesion, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706 ||| term=SNARE; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOL018C and YAL014C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tlg2" ; product "SNARE Tlg2 (predicted)" ;
chromosome1 GeneDB CDS 2588863 2589275 . - . mRNA SPAC823.05c ; colour "7" ;
chromosome1 GeneDB CDS 2589328 2589820 . - . mRNA SPAC823.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 2589276 2589294 . - . misc_feature unknown_2204 ; colour "6" ; note "ctgaccccaaattttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2589322 2589327 . - . misc_feature unknown_2205 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2589819 2590072 . - . mRNA SPAC823.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC823.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2590238 2590312 . + . mRNA SPAC823.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC823.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2590313 2590780 . + . mRNA SPAC823.06 ; systematic_id "SPAC823.06" ; colour "7" ; gene "taf3 ||| SPAC823.06" ; Alias "taf3" ; db_xref "SPD:04/04C06" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YPL011C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "taf3" ; product "transcription factor TFIID complex subunit Taf3 (predicted)" ;
chromosome1 GeneDB CDS 2590313 2590780 . + . mRNA SPAC823.06 ; colour "7" ;
chromosome1 GeneDB CDS_parts 2591413 2592408 . + . mRNA SPAC823.07 ; db_xref "SPD:14/14E06" ; systematic_id "SPAC823.07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030026; manganese ion homeostasis
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0006506; GPI anchor biosynthesis
GO:0005789; endoplasmic reticulum membrane" ; gene "SPAC823.07" ; product "GPI-phospholipase A2 activity regulator (predicted)" ;
chromosome1 GeneDB CDS 2591413 2592408 . + . mRNA SPAC823.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2592409 2592545 . + . mRNA SPAC823.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC823.07" ; systematic_id "SPAC823.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2592545 2592646 . - . mRNA SPAC823.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC823.08c" ; systematic_id "SPAC823.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2592647 2594044 . - . mRNA SPAC823.08c ; db_xref "SPD:21/21F05" ; systematic_id "SPAC823.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YHR065C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus
GO:0004004; ATP-dependent RNA helicase activity" ; gene "SPAC823.08c" ; product "ATP-dependent RNA helicase Rrp3 (predicted)" ;
chromosome1 GeneDB CDS 2592647 2594044 . - . mRNA SPAC823.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2594043 2594197 . - . mRNA SPAC823.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC823.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2594545 2594734 . - . mRNA SPAC823.09c ; ID "SPAC823.09c" ; db_xref "PMID:18488015 ||| SPD:12/12C06" ; systematic_id "SPAC823.09c" ; synonym "SPNG473" ;
chromosome1 GeneDB CDS_parts 2594777 2595819 . - . mRNA SPAC823.09c ; db_xref "SPD:12/12C06" ; systematic_id "SPAC823.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004067; asparaginase activity
GO:0006530; asparagine catabolic process
GO:0004298; threonine-type endopeptidase activity" ; colour "7" ; gene "SPAC823.09c" ; product "threonine aspartase (predicted)" ;
chromosome1 GeneDB CDS 2594777 2594913 . - . mRNA SPAC823.09c ; colour "7" ;
chromosome1 GeneDB CDS 2594966 2595693 . - . mRNA SPAC823.09c ; colour "7" ;
chromosome1 GeneDB CDS 2595734 2595819 . - . mRNA SPAC823.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 2595694 2595704 . - . misc_feature unknown_2206 ; colour "6" ; note "ctaactttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2595728 2595733 . - . misc_feature unknown_2207 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2596175 2596250 . - . mRNA SPAC823.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC823.10c" ; systematic_id "SPAC823.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2596251 2597209 . - . mRNA SPAC823.10c ; db_xref "SPD:43/43F06" ; systematic_id "SPAC823.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YDL119C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0022857; transmembrane transporter activity" ; gene "SPAC823.10c" ; product "mitochondrial carrier with solute carrier repeats (predicted)" ;
chromosome1 GeneDB CDS 2596251 2596736 . - . mRNA SPAC823.10c ; colour "7" ;
chromosome1 GeneDB CDS 2596805 2597209 . - . mRNA SPAC823.10c ; colour "7" ;
chromosome1 GeneDB misc_feature 2596737 2596754 . - . misc_feature unknown_2208 ; colour "6" ; note "ctaatcaacaattgatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2596799 2596804 . - . misc_feature unknown_2209 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2597208 2597386 . - . mRNA SPAC823.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC823.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2597443 2597985 . + . misc_RNA SPNCRNA.199 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.199" ; synonym "SPNG474" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2598266 2598324 . + . mRNA SPAC823.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC823.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2598325 2599668 . + . mRNA SPAC823.11 ; db_xref "SPD:20/20G06" ; systematic_id "SPAC823.11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR053C and YJL134W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0030148; sphingolipid biosynthesis" ; gene "SPAC823.11" ; product "sphingosine-1-phosphate phosphatase (predicted)" ;
chromosome1 GeneDB CDS 2598325 2598495 . + . mRNA SPAC823.11 ; colour "7" ;
chromosome1 GeneDB CDS 2598552 2599299 . + . mRNA SPAC823.11 ; colour "7" ;
chromosome1 GeneDB CDS 2599352 2599668 . + . mRNA SPAC823.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 2598496 2598501 . + . misc_feature unknown_2210 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2598533 2598551 . + . misc_feature unknown_2211 ; colour "6" ; note "ctaacattcgtttacgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2599300 2599305 . + . misc_feature unknown_2212 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2599337 2599351 . + . misc_feature unknown_2213 ; colour "6" ; note "ctaacaatttaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2599669 2599970 . + . mRNA SPAC823.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC823.11" ; systematic_id "SPAC823.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2601128 2601241 . + . mRNA SPAC823.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC823.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2601242 2603962 . + . mRNA SPAC823.12 ; systematic_id "SPAC823.12" ; colour "7" ; gene "vps11 ||| SPAC823.12" ; Alias "vps11" ; db_xref "SPD:39/39A09" ; GO "GO:0030897; HOPS complex
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006895; Golgi to endosome transport
GO:0045324; late endosome to vacuole transport
GO:0016567; protein ubiquitination
GO:0042144; vacuole fusion, non-autophagic
GO:0006904; vesicle docking during exocytosis
GO:0000329; fungal-type vacuole membrane
GO:0070314; G1 to G0 transition
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YMR231W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps11" ; product "HOPs complex subunit Pep5/Vps11 (predicted)" ;
chromosome1 GeneDB CDS 2601242 2603962 . + . mRNA SPAC823.12 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2603963 2604153 . + . mRNA SPAC823.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC823.12" ; systematic_id "SPAC823.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2604098 2604258 . - . mRNA SPAC823.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC823.13c" ; systematic_id "SPAC823.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2604259 2605212 . - . mRNA SPAC823.13c ; db_xref "SPD:13/13D09" ; systematic_id "SPAC823.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR393W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0007007; inner mitochondrial membrane organization and biogenesis
GO:0005743; mitochondrial inner membrane" ; gene "SPAC823.13c" ; product "mitochondrial inner membrane protein (predicted)" ;
chromosome1 GeneDB CDS 2604259 2605212 . - . mRNA SPAC823.13c ; colour "7" ;
chromosome1 GeneDB LTR 2605356 2605703 . + . LTR unknown_2214 ; note "Tf2-type LTR" ;
chromosome1 GeneDB 5'-UTR 2606133 2606184 . + . mRNA SPAC823.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC823.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2606185 2607189 . + . mRNA SPAC823.14 ; systematic_id "SPAC823.14" ; colour "10" ; gene "SPAC823.14" ; note "human and mouse family members annotated as phosphoethanolamine/phosphocholine phosphatase 3.1.3.75 and pyridoxal phopshatase 3.1.3.74" ; Alias "ptf1" ; db_xref "SPD:14/14G08" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016791; phophatase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL010W; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20090618 ||| term=species distribution, conserved in Metazoa; date=20090618 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618 ||| term=species distribution, conserved in Vertebrates; date=20090618" ; primary_name "ptf1" ; product "phosphoric monoester hydrolase (predicted)" ; reserved_name "ptf1" ; EC_number "3.1.3.-" ;
chromosome1 GeneDB CDS 2606185 2606227 . + . mRNA SPAC823.14 ; colour "10" ;
chromosome1 GeneDB CDS 2606279 2606317 . + . mRNA SPAC823.14 ; colour "10" ;
chromosome1 GeneDB CDS 2606541 2606613 . + . mRNA SPAC823.14 ; colour "10" ;
chromosome1 GeneDB CDS 2606655 2607189 . + . mRNA SPAC823.14 ; colour "10" ;
chromosome1 GeneDB misc_feature 2606228 2606233 . + . misc_feature unknown_2215 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2606261 2606278 . + . misc_feature unknown_2216 ; colour "6" ; note "ctaacttttggggtctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2606526 2606540 . + . misc_feature unknown_2217 ; colour "6" ; note "ctaactatgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2606614 2606619 . + . misc_feature unknown_2218 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2606641 2606654 . + . misc_feature unknown_2219 ; colour "6" ; note "ttaacaattcatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2607190 2607340 . + . mRNA SPAC823.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC823.14" ; systematic_id "SPAC823.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2607835 2608102 . + . mRNA SPAC823.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC823.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2608103 2609032 . + . mRNA SPAC823.15 ; systematic_id "SPAC823.15" ; colour "2" ; gene "ppa1 ||| SPAC823.15" ; Alias "ppa1" ; db_xref "SPD:13/13A05" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0007346; regulation of mitotic cell cycle
GO:0006417; regulation of translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PP2A; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:2170029; date=19700101 ||| term=orthologous to S. cerevisiae YDL134C and YDL188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppa1" ; product "minor serine/threonine protein phosphatase Ppa1" ; EC_number "3.1.3.16" ;
chromosome1 GeneDB CDS 2608103 2609032 . + . mRNA SPAC823.15 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2609033 2609156 . + . mRNA SPAC823.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC823.15" ; systematic_id "SPAC823.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2609378 2609468 . - . mRNA SPAC823.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC823.16c" ; systematic_id "SPAC823.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2609469 2610704 . - . mRNA SPAC823.16c ; systematic_id "SPAC823.16c" ; colour "2" ; db_xref "SPD:19/19G02" ; Alias "mug179" ; synonym "atg18b" ; GO "GO:0005829; cytosol
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0035091; phosphoinositide binding
GO:0006623; protein targeting to vacuole
GO:0030437; sporulation (sensu Fungi)
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YFR021W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug179" ; product "WD repeat protein involved in autophagy Atg18b" ;
chromosome1 GeneDB CDS 2609469 2609481 . - . mRNA SPAC823.16c ; colour "2" ;
chromosome1 GeneDB CDS 2609522 2610291 . - . mRNA SPAC823.16c ; colour "2" ;
chromosome1 GeneDB CDS 2610348 2610454 . - . mRNA SPAC823.16c ; colour "2" ;
chromosome1 GeneDB CDS 2610529 2610602 . - . mRNA SPAC823.16c ; colour "2" ;
chromosome1 GeneDB CDS 2610661 2610704 . - . mRNA SPAC823.16c ; colour "2" ;
chromosome1 GeneDB misc_feature 2609482 2609494 . - . misc_feature unknown_2220 ; colour "6" ; note "ttaacatatctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2609516 2609521 . - . misc_feature unknown_2221 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2610292 2610308 . - . misc_feature unknown_2222 ; colour "6" ; note "ttaacccatatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2610342 2610347 . - . misc_feature unknown_2223 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2610455 2610464 . - . misc_feature unknown_2224 ; colour "6" ; note "ctgattgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2610523 2610528 . - . misc_feature unknown_2225 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2610603 2610619 . - . misc_feature unknown_2226 ; colour "6" ; note "ctgactgctaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2610655 2610660 . - . misc_feature unknown_2227 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2610703 2610917 . - . mRNA SPAC823.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC823.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2610770 2611002 . + . misc_feature unknown_2228 ; note "nominal overlap with cosmid c7D4" ;
chromosome1 GeneDB 5'-UTR 2611026 2611099 . + . mRNA SPAC7D4.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC7D4.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2611100 2612755 . + . mRNA SPAC7D4.14c ; db_xref "SPD:34/34F12" ; systematic_id "SPAC7D4.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC7D4.14c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2611100 2612755 . + . mRNA SPAC7D4.14c ; colour "8" ;
chromosome1 GeneDB 3'-UTR 2612756 2612897 . + . mRNA SPAC7D4.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC7D4.14c" ; systematic_id "SPAC7D4.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2613226 2613295 . + . mRNA SPAC7D4.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC7D4.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2613296 2614306 . + . mRNA SPAC7D4.13c ; db_xref "SPD:15/15A03" ; systematic_id "SPAC7D4.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC7D4.13c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2613296 2613310 . + . mRNA SPAC7D4.13c ; colour "8" ;
chromosome1 GeneDB CDS 2613383 2614306 . + . mRNA SPAC7D4.13c ; colour "8" ;
chromosome1 GeneDB misc_feature 2613311 2613316 . + . misc_feature unknown_2229 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2613365 2613382 . + . misc_feature unknown_2230 ; colour "6" ; note "ctaactactaaaacctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2614307 2614383 . + . mRNA SPAC7D4.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC7D4.13c" ; systematic_id "SPAC7D4.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2614767 2615041 . + . mRNA SPAC7D4.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC7D4.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2615042 2617321 . + . mRNA SPAC7D4.12c ; db_xref "SPD:38/38B05" ; systematic_id "SPAC7D4.12c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL107C; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20081203" ; colour "10" ; gene "SPAC7D4.12c" ; product "DUF1212 family protein" ;
chromosome1 GeneDB CDS 2615042 2617321 . + . mRNA SPAC7D4.12c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2617956 2617974 . + . mRNA SPAC7D4.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC7D4.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2617975 2620284 . + . mRNA SPAC7D4.11c ; systematic_id "SPAC7D4.11c" ; colour "7" ; gene "sec39 ||| SPAC7D4.11c" ; Alias "sec39" ; db_xref "SPD:28/28C07" ; GO "GO:0005783; endoplasmic reticulum
GO:0031965; nuclear membrane
GO:0016192; vesicle-mediated transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR440C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec39" ; product "secretory pathway protein Sec39 (predicted)" ;
chromosome1 GeneDB CDS 2617975 2620284 . + . mRNA SPAC7D4.11c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2620285 2620320 . + . mRNA SPAC7D4.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC7D4.11c" ; systematic_id "SPAC7D4.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2620295 2622195 . - . mRNA SPAC7D4.10 ; systematic_id "SPAC7D4.10" ; colour "7" ; gene "vma13 ||| SPAC7D4.10" ; db_xref "SPD:46/46B03" ; Alias "vma13" ; GO "GO:0000221; vacuolar proton-translocating V-type ATPase, V1 domain
GO:0005524; ATP binding
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vma13" ; product "V-type ATPase V1 subunit H (predicted)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB CDS 2620295 2620319 . - . mRNA SPAC7D4.10 ; colour "7" ;
chromosome1 GeneDB CDS 2620575 2621519 . - . mRNA SPAC7D4.10 ; colour "7" ;
chromosome1 GeneDB CDS 2621662 2621725 . - . mRNA SPAC7D4.10 ; colour "7" ;
chromosome1 GeneDB CDS 2621776 2621878 . - . mRNA SPAC7D4.10 ; colour "7" ;
chromosome1 GeneDB CDS 2621932 2622120 . - . mRNA SPAC7D4.10 ; colour "7" ;
chromosome1 GeneDB CDS 2622169 2622195 . - . mRNA SPAC7D4.10 ; colour "7" ;
chromosome1 GeneDB intron 2620320 2620574 . - . intron SPAC7D4.10 ; Alias "vma13" ; db_xref "SPD:46/46B03" ; systematic_id "SPAC7D4.10" ; primary_name "vma13" ; gene "vma13 ||| SPAC7D4.10" ; note "confirmed" ;
chromosome1 GeneDB intron 2620521 2620574 . - . intron SPAC7D4.10 ; Alias "vma13" ; db_xref "SPD:46/46B03" ; systematic_id "SPAC7D4.10" ; primary_name "vma13" ; gene "vma13 ||| SPAC7D4.10" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2621520 2621531 . - . misc_feature unknown_2231 ; colour "6" ; note "ctaaccacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2621656 2621661 . - . misc_feature unknown_2232 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2621726 2621738 . - . misc_feature unknown_2233 ; colour "6" ; note "ctaattttttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2621770 2621775 . - . misc_feature unknown_2234 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2621879 2621895 . - . misc_feature unknown_2235 ; colour "6" ; note "ttaacttttttaaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2621926 2621931 . - . misc_feature unknown_2236 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2622121 2622133 . - . misc_feature unknown_2237 ; colour "6" ; note "ctaaccaagtcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2622163 2622168 . - . misc_feature unknown_2238 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2622194 2622302 . - . mRNA SPAC7D4.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC7D4.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2622466 2622665 . + . mRNA SPAC7D4.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC7D4.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2622666 2623490 . + . mRNA SPAC7D4.09c ; db_xref "SPD:10/10F07" ; systematic_id "SPAC7D4.09c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL049W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0044255; cellular lipid metabolic process" ; colour "7" ; gene "SPAC7D4.09c" ; product "steroid dehydrogenase (predicted)" ;
chromosome1 GeneDB CDS 2622666 2623490 . + . mRNA SPAC7D4.09c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2623491 2623568 . + . mRNA SPAC7D4.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC7D4.09c" ; systematic_id "SPAC7D4.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2623940 2624038 . - . mRNA SPAC7D4.15c ; systematic_id "SPAC7D4.15c" ; colour "7" ; gene "SPAC7D4.15c ||| ost4" ; Alias "ost4" ; db_xref "SPD:51/51F05" ; GO "GO:0006487; protein amino acid N-linked glycosylation
GO:0004579; dolichyl-diphosphooligosaccharide- protei nglycotransferase activity
GO:0008250; oligosaccharyl transferase complex
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL232W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ost4" ; product "oligosaccharyltransferase subunit Ost4 (predicted)" ;
chromosome1 GeneDB CDS 2623940 2624038 . - . mRNA SPAC7D4.15c ; colour "7" ;
chromosome1 GeneDB CDS_parts 2625042 2625332 . - . mRNA SPAC7D4.08 ; db_xref "SPD:01/01D04" ; systematic_id "SPAC7D4.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC7D4.08" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2625042 2625332 . - . mRNA SPAC7D4.08 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 2625316 2625456 . + . mRNA SPAC7D4.07c ; Alias "trx1" ; ID "SPAC7D4.07c" ; systematic_id "SPAC7D4.07c" ; primary_name "trx1" ; gene "trx1 ||| SPAC7D4.07c" ; note "mRNA from SPTRX2" ;
chromosome1 GeneDB CDS_parts 2625457 2625768 . + . mRNA SPAC7D4.07c ; systematic_id "SPAC7D4.07c" ; colour "2" ; gene "trx1 ||| SPAC7D4.07c" ; Alias "trx1" ; obsolete_name "trx2" ; db_xref "SPD:01/01F01" ; GO "GO:0005737; cytoplasm
GO:0016209; antoioxidant activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0015035; protein disulfide oxidoreductase activity
GO:0006467; protein thiol-disulfide exchange
GO:0034614; cellular response to reactive oxygen species
GO:0090329; regulation of DNA-dependent DNA replication" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YLR043C and YGR209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "trx1" ; product "cytosolic thioredoxin Trx1" ;
chromosome1 GeneDB CDS 2625457 2625768 . + . mRNA SPAC7D4.07c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2625769 2625855 . + . mRNA SPAC7D4.07c ; Alias "trx1" ; ID "SPAC7D4.07c" ; db_xref "SPD:01/01F01" ; systematic_id "SPAC7D4.07c" ; primary_name "trx1" ; gene "trx1 ||| SPAC7D4.07c" ; note "mRNA from SPTRX2" ;
chromosome1 GeneDB 5'-UTR 2626428 2626582 . + . mRNA SPAC7D4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC7D4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2626583 2627803 . + . mRNA SPAC7D4.06c ; systematic_id "SPAC7D4.06c" ; colour "7" ; gene "alg3 ||| SPAC7D4.06c" ; Alias "alg3" ; db_xref "SPD:19/19D08" ; GO "GO:0000033; alpha-1,3-mannosyltransferase activity
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0005783; endoplasmic reticulum
GO:0004584; dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL082C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "alg3" ; product "dolichol-P-Man dependent alpha(1-3) mannosyltransferase Alg3 (predicted)" ; EC_number "2.4.1.130" ;
chromosome1 GeneDB CDS 2626583 2627803 . + . mRNA SPAC7D4.06c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2627804 2628241 . + . mRNA SPAC7D4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC7D4.06c" ; systematic_id "SPAC7D4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snoRNA 2627988 2628071 . - . snoRNA SPSNORNA.12 ; Alias "snoR02" ; systematic_id "SPSNORNA.12" ; primary_name "snoR02" ; gene "snoR02 ||| SPSNORNA.12" ; product "small nucleolar RNA snoR02 (predicted)" ;
chromosome1 GeneDB 3'-UTR 2629288 2629372 . - . mRNA SPAC7D4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC7D4.05" ; systematic_id "SPAC7D4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2629373 2630183 . - . mRNA SPAC7D4.05 ; db_xref "SPD:43/43C12" ; systematic_id "SPAC7D4.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR130W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human HDHD3 ortholog; date=20100718" ; colour "10" ; gene "SPAC7D4.05" ; product "hydrolase (predicted)" ;
chromosome1 GeneDB CDS 2629373 2629819 . - . mRNA SPAC7D4.05 ; colour "10" ;
chromosome1 GeneDB CDS 2629909 2629985 . - . mRNA SPAC7D4.05 ; colour "10" ;
chromosome1 GeneDB CDS 2630030 2630183 . - . mRNA SPAC7D4.05 ; colour "10" ;
chromosome1 GeneDB misc_feature 2629820 2629832 . - . misc_feature unknown_2239 ; colour "6" ; note "ctaacaattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2629903 2629908 . - . misc_feature unknown_2240 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2629986 2629997 . - . misc_feature unknown_2241 ; colour "6" ; note "ctaataatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2630024 2630029 . - . misc_feature unknown_2242 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2630448 2630588 . - . mRNA SPAC7D4.04 ; Alias "taf1" ; ID "SPAC7D4.04" ; db_xref "SPD:29/29D07" ; systematic_id "SPAC7D4.04" ; primary_name "taf1" ; gene "taf1 ||| SPAC7D4.04" ; note "mRNA from AU010001" ;
chromosome1 GeneDB CDS_parts 2630589 2633369 . - . mRNA SPAC7D4.04 ; systematic_id "SPAC7D4.04" ; colour "2" ; gene "taf1 ||| SPAC7D4.04" ; Alias "taf1" ; db_xref "SPD:29/29D07" ; synonym "cvt9 ||| atg11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YPR049C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Metazoa; date=20090202 ||| term=species distribution, conserved in Vertebrates; date=20090202" ; GO "GO:0019898; extrinsic to membrane
GO:0000407; pre-autophagosomal structure
GO:0005515; protein binding
GO:0032258; CVT pathway
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0030242; peroxisome degradation
GO:0034497; protein localization to pre- autophagosomal structure
GO:0006623; protein targeting to vacuole
GO:0000723; telomere maintenance" ; primary_name "taf1" ; product "Taz1 interacting factor 1, autophagy protein" ;
chromosome1 GeneDB CDS 2630589 2633369 . - . mRNA SPAC7D4.04 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2633368 2633520 . - . mRNA SPAC7D4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC7D4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2633797 2634210 . + . mRNA SPAC7D4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC7D4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2634211 2636871 . + . mRNA SPAC7D4.03c ; db_xref "SPD:38/38G12" ; systematic_id "SPAC7D4.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC7D4.03c" ; product "conserved fungal family" ;
chromosome1 GeneDB CDS 2634211 2636871 . + . mRNA SPAC7D4.03c ; colour "10" ;
chromosome1 GeneDB 3'-UTR 2636872 2637041 . + . mRNA SPAC7D4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC7D4.03c" ; systematic_id "SPAC7D4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2637653 2637725 . + . mRNA SPAC7D4.02c ; ID "SPAC7D4.02c" ; systematic_id "SPAC7D4.02c" ; note "mRNA from spc02581" ;
chromosome1 GeneDB CDS_parts 2637726 2639299 . + . mRNA SPAC7D4.02c ; systematic_id "SPAC7D4.02c" ; colour "2" ; db_xref "SPD:45/45B09" ; Alias "sfp47" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, SH3 domain ubp Four Partner; cv=name_description; db_xref=PMID:20838651; date=20100415 ||| term=target is Ubp4; db_xref=PMID:20838651; date=20101001" ; GO "GO:2000158; negative regulation of ubiquitin- specific protease
GO:0005515; protein binding
GO:0034613; cellular protein localization" ; primary_name "sfp47" ; product "Ubp4 interactor Sfp47" ;
chromosome1 GeneDB CDS 2637726 2637808 . + . mRNA SPAC7D4.02c ; colour "2" ;
chromosome1 GeneDB CDS 2637979 2638210 . + . mRNA SPAC7D4.02c ; colour "2" ;
chromosome1 GeneDB CDS 2638304 2639057 . + . mRNA SPAC7D4.02c ; colour "2" ;
chromosome1 GeneDB CDS 2639121 2639299 . + . mRNA SPAC7D4.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 2637809 2637814 . + . misc_feature unknown_2243 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2637809 2637978 . + . intron SPAC7D4.02c ; db_xref "SPD:45/45B09" ; systematic_id "SPAC7D4.02c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2637961 2637978 . + . misc_feature unknown_2244 ; colour "6" ; note "ctaatctactttataaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2638211 2638216 . + . misc_feature unknown_2245 ; colour "6" ; note "gtatag, splice donor sequence" ;
chromosome1 GeneDB intron 2638211 2638303 . + . intron SPAC7D4.02c ; db_xref "SPD:45/45B09" ; systematic_id "SPAC7D4.02c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2638289 2638303 . + . misc_feature unknown_2246 ; colour "6" ; note "ctaacggtgttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2639058 2639063 . + . misc_feature unknown_2247 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2639110 2639120 . + . misc_feature unknown_2248 ; colour "6" ; note "ctaactaattaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2639300 2639518 . + . mRNA SPAC7D4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC7D4.02c" ; systematic_id "SPAC7D4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2639626 2639700 . - . mRNA SPAC4F8.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F8.15" ; systematic_id "SPAC4F8.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2639701 2641428 . - . mRNA SPAC4F8.15 ; systematic_id "SPAC4F8.15" ; colour "2" ; gene "itr1 ||| SPAC7D4.01 ||| SPAC4F8.15" ; Alias "itr1" ; db_xref "SPD:35/35F10" ; synonym "SPAC7D4.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR497C and YOL103W and YDR387C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000747; conjugation with cellular fusion
GO:0030437; sporulation (sensu Fungi)" ; primary_name "itr1" ; product "myo-inositol transporter Itr1" ;
chromosome1 GeneDB CDS 2639701 2641428 . - . mRNA SPAC4F8.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 2640492 2640561 . - . misc_feature unknown_2249 ; note "nominal overlap with cosmid SPAC7D4 and cosmid SPAC4F8" ;
chromosome1 GeneDB 5'-UTR 2641427 2642322 . - . mRNA SPAC4F8.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F8.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2643533 2643623 . + . mRNA SPAC4F8.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F8.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2643624 2645143 . + . mRNA SPAC4F8.14c ; systematic_id "SPAC4F8.14c" ; colour "2" ; gene "hcs1 ||| hcs ||| SPAC4F8.14c" ; Alias "hcs1" ; db_xref "SPD:24/24F06" ; synonym "hcs" ; GO "GO:0004421; hydroxymethylglutaryl-CoA synthase activity
GO:0005783; endoplasmic reticulum
GO:0006696; ergosterol biosynthesis
GO:0010142; farnesyl diphosphate biosynthesis, mevalonate pathway
GO:0006084; acetyl-CoA metabolism
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML126C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "hcs1" ; product "3-hydroxy-3-methylglutaryl-CoA synthase" ; EC_number "2.3.3.10" ;
chromosome1 GeneDB CDS 2643624 2643683 . + . mRNA SPAC4F8.14c ; colour "2" ;
chromosome1 GeneDB CDS 2643860 2645143 . + . mRNA SPAC4F8.14c ; colour "2" ;
chromosome1 GeneDB misc_feature 2643684 2643689 . + . misc_feature unknown_2250 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2643839 2643859 . + . misc_feature unknown_2251 ; colour "6" ; note "ttaatcgtttttaccctatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2645144 2645254 . + . mRNA SPAC4F8.14c ; Alias "hcs1" ; ID "SPAC4F8.14c" ; db_xref "SPD:24/24F06" ; systematic_id "SPAC4F8.14c" ; primary_name "hcs1" ; gene "hcs1 ||| hcs ||| SPAC4F8.14c" ; note "mRNA from AU012138" ;
chromosome1 GeneDB 5'-UTR 2645456 2645516 . + . mRNA SPAC4F8.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F8.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2645517 2649986 . + . mRNA SPAC4F8.13c ; systematic_id "SPAC4F8.13c" ; colour "2" ; gene "rng2 ||| SPAC4F8.13c" ; db_xref "SPD:30/30H04" ; Alias "rng2" ; GO "; contractile ring
; spindle pole body
GO:0005099; Ras GTPase activator activity
GO:0003779; actin binding
GO:0005516; calmodulin binding
GO:0000915; cytokinesis, contractile ring formation
GO:0033205; cell cycle cytokinesis
GO:0046580; negative regulation of Ras protein signal transduction
GO:0051017; actin filament bundle formation
GO:0071519; actin filament bundle formation involved in actomyosin contractile ring formation
GO:0071520; actin filament bundle convergence involved in actomyosin contractile ring formation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9635188; date=19700101 ||| term=IQ domain; date=19700101 ||| term=calponin homology (CH) domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL242C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=localization dependent on actin; date=20090820 ||| term=phenotype, cytokinesis defects, contractile ring actin, absent; db_xref=PMID:19713940; qualifier=deletion; cv=phenotype; date=20091223 ||| term=phenotype, cytokinesis defects, contractile ring myosin distribution, defective; db_xref=PMID:19713940; cv=phenotype; qualifier=ts; date=20091223" ; primary_name "rng2" ; product "IQGAP" ;
chromosome1 GeneDB CDS 2645517 2649986 . + . mRNA SPAC4F8.13c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2649987 2650352 . + . mRNA SPAC4F8.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F8.13c" ; systematic_id "SPAC4F8.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2650738 2657829 . + . mRNA SPAC4F8.12c ; systematic_id "SPAC4F8.12c" ; colour "2" ; gene "spp42 ||| cwf6 ||| SPAC4F8.12c" ; Alias "spp42" ; db_xref "SPD:34/34C11" ; synonym "cwf6" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YHR165C; date=19700101 ||| term=disease associated, retinitis pigmentosa; date=20080305 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005682; snRNP U5
GO:0000393; spliceosomal conformational changes to generate catalytic conformation
GO:0004843; ubiquitin-specific protease activity" ; primary_name "spp42" ; product "U5 snRNP complex subunit Spp42" ;
chromosome1 GeneDB CDS 2650738 2657829 . + . mRNA SPAC4F8.12c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2657830 2657940 . + . mRNA SPAC4F8.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F8.12c" ; systematic_id "SPAC4F8.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2658044 2660584 . - . mRNA SPAC4F8.11 ; db_xref "SPD:29/29C10" ; systematic_id "SPAC4F8.11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOL138C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human WDR24 ortholog; date=20100718" ; colour "10" ; gene "SPAC4F8.11" ; product "WD repeat protein, human WDR24 family" ;
chromosome1 GeneDB CDS 2658044 2660584 . - . mRNA SPAC4F8.11 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2660583 2661022 . - . mRNA SPAC4F8.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F8.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2660766 2661423 . + . misc_RNA SPNCRNA.326 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.326" ; synonym "SPNG480" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2661738 2661800 . + . mRNA SPAC4F8.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F8.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2661801 2662325 . + . mRNA SPAC4F8.10c ; systematic_id "SPAC4F8.10c" ; colour "2" ; gene "stg1 ||| SPAC4F8.10c" ; Alias "stg1" ; db_xref "SPD:05/05C02" ; GO "GO:0030036; actin cytoskeleton organization and biogenesis
GO:0030479; actin cortical patch
GO:0007015; actin filament organization
GO:0051015; actin filament binding
GO:0051764; actin cross link formation
GO:0071776; negative regulation of cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=calponin homology (CH) domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR367W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "stg1" ; product "SM22/transgelin-like actin modulating protein Stg1" ;
chromosome1 GeneDB CDS 2661801 2662325 . + . mRNA SPAC4F8.10c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2662326 2662453 . + . mRNA SPAC4F8.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F8.10c" ; systematic_id "SPAC4F8.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2663415 2664052 . + . misc_RNA SPNCRNA.200 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.200" ; synonym "SPNG482" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 2664524 2664979 . - . mRNA SPAC4F8.08 ; systematic_id "SPAC4F8.08" ; colour "8" ; gene "SPAC4F8.08 ||| mug114" ; db_xref "SPD:04/04A10" ; Alias "mug114" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug114" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2664524 2664979 . - . mRNA SPAC4F8.08 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 2665634 2665815 . + . mRNA SPAC4F8.07c ; Alias "hxk2" ; ID "SPAC4F8.07c" ; db_xref "EMBL:X92895" ; systematic_id "SPAC4F8.07c" ; gene "hxk2 ||| SPAC4F8.07c" ; primary_name "hxk2" ;
chromosome1 GeneDB CDS_parts 2665816 2667183 . + . mRNA SPAC4F8.07c ; systematic_id "SPAC4F8.07c" ; colour "2" ; gene "hxk2 ||| SPAC4F8.07c" ; Alias "hxk2" ; db_xref "SPD:21/21B10" ; GO "GO:0008865; fructokinase activity
GO:0004340; glucokinase activity
GO:0019158; mannokinase activity
GO:0006002; fructose 6-phosphate metabolism
GO:0051156; glucose 6-phosphate metabolism
GO:0006013; mannose metabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression repressed by glucose; db_xref=PMID:8549830; cv=gene_ex; date=20061122 ||| term=orthologous to S. cerevisiae YCL040W|YDR516C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hxk2" ; product "hexokinase 2" ; EC_number "2.7.1.1 ||| 2.7.1.4 ||| 2.7.1.7 ||| 2.7.1.2" ;
chromosome1 GeneDB CDS 2665816 2667183 . + . mRNA SPAC4F8.07c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2667184 2667267 . + . mRNA SPAC4F8.07c ; Alias "hxk2" ; ID "SPAC4F8.07c" ; db_xref "EMBL:X92895 ||| SPD:21/21B10" ; systematic_id "SPAC4F8.07c" ; gene "hxk2 ||| SPAC4F8.07c" ; primary_name "hxk2" ;
chromosome1 GeneDB misc_RNA 2667490 2667719 . + . misc_RNA SPNCRNA.201 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.201" ; synonym "SPNG484" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 2668061 2668333 . - . mRNA SPAC4F8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F8.06" ; systematic_id "SPAC4F8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2668334 2668774 . - . mRNA SPAC4F8.06 ; db_xref "SPD:03/03G09" ; systematic_id "SPAC4F8.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; gene "SPAC4F8.06" ; product "mitochondrial ribosomal protein subunit S12 (predicted)" ;
chromosome1 GeneDB CDS 2668334 2668774 . - . mRNA SPAC4F8.06 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2668773 2669050 . - . mRNA SPAC4F8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2669656 2669812 . + . mRNA SPAC4F8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2669813 2670169 . + . mRNA SPAC4F8.05c ; systematic_id "SPAC4F8.05c" ; colour "7" ; gene "SPAC4F8.05c ||| mrpl28" ; Alias "mrpl28" ; db_xref "SPD:02/02D07" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR462W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mrpl28" ; product "mitochondrial ribosomal protein subunit L28 (predicted)" ;
chromosome1 GeneDB CDS 2669813 2670169 . + . mRNA SPAC4F8.05c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2670170 2670261 . + . mRNA SPAC4F8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F8.05c" ; systematic_id "SPAC4F8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2670293 2670528 . - . mRNA SPAC4F8.04 ; ID "SPAC4F8.04" ; db_xref "SPD:12/12G10" ; systematic_id "SPAC4F8.04" ; gene "SPAC4F8.04" ; note "mRNA from AU006782" ;
chromosome1 GeneDB CDS_parts 2670529 2671449 . - . mRNA SPAC4F8.04 ; db_xref "SPD:12/12G10" ; systematic_id "SPAC4F8.04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0003723; RNA binding
GO:0000466; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0000463; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0042134; rRNA primary transcript binding
GO:0000027; ribosomal large subunit assembly and maintenance
GO:0042254; ribosome biogenesis and assembly" ; gene "SPAC4F8.04" ; product "Brix domain protein Rpf1 (predicted)" ;
chromosome1 GeneDB CDS 2670529 2671449 . - . mRNA SPAC4F8.04 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2671450 2671587 . - . mRNA SPAC4F8.04 ; ID "SPAC4F8.04" ; systematic_id "SPAC4F8.04" ; gene "SPAC4F8.04" ; note "mRNA from AU007831" ;
chromosome1 GeneDB 3'-UTR 2671968 2672170 . - . mRNA SPAC4F8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F8.03" ; systematic_id "SPAC4F8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2672171 2673105 . - . mRNA SPAC4F8.03 ; systematic_id "SPAC4F8.03" ; colour "7" ; gene "sdo1 ||| SPAC4F8.03 ||| SPAC644.01c" ; Alias "sdo1" ; db_xref "SPD:13/13B01" ; synonym "SPAC644.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Shwachman- Bodian-Diamond syndrome; date=19700101 ||| term=orthologous to S. cerevisiae YLR022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human SBDS ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0030687; nucleolar preribosome, large subunit precursor
GO:0000054; ribosome export from nucleus
GO:0042273; ribosomal large subunit biogenesis and assembly" ; primary_name "sdo1" ; product "SBDS family ribosome maturation protein Sdo1 (predicted)" ;
chromosome1 GeneDB CDS 2672171 2672783 . - . mRNA SPAC4F8.03 ; colour "7" ;
chromosome1 GeneDB CDS 2672978 2673105 . - . mRNA SPAC4F8.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 2672449 2675903 . + . misc_feature unknown_2252 ; note "nominal overlap with cosmid SPAC644 and cosmid SPAC4F8" ;
chromosome1 GeneDB misc_feature 2672784 2672797 . - . misc_feature unknown_2253 ; colour "6" ; note "ctaaccaagtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2672972 2672977 . - . misc_feature unknown_2254 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2673104 2673122 . - . mRNA SPAC4F8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2673837 2673979 . + . mRNA SPAC4F8.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F8.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2673980 2674819 . + . mRNA SPAC4F8.02c ; systematic_id "SPAC4F8.02c" ; colour "7" ; gene "SPAC4F8.02c ||| SPAC644.02 ||| mrpl40" ; Alias "mrpl40" ; db_xref "SPD:43/43D06" ; synonym "SPAC644.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL173W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; primary_name "mrpl40" ; product "mitochondrial ribosomal protein subunit L40 (predicted)" ;
chromosome1 GeneDB CDS 2673980 2674819 . + . mRNA SPAC4F8.02c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2674820 2674883 . + . mRNA SPAC4F8.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F8.02c" ; systematic_id "SPAC4F8.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2674992 2675098 . - . mRNA SPAC4F8.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F8.01" ; systematic_id "SPAC4F8.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2675099 2675970 . - . mRNA SPAC4F8.01 ; systematic_id "SPAC4F8.01" ; colour "2" ; gene "SPAC4F8.01 ||| SPAC644.03c ||| did4 ||| vps2" ; Alias "did4" ; db_xref "SPD:11/11G06" ; synonym "SPAC644.03c ||| vps2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport
GO:0000815; ESCRT III complex
GO:0045053; protein retention in Golgi" ; primary_name "did4" ; product "vacuolar sorting protein Did4" ;
chromosome1 GeneDB CDS 2675099 2675398 . - . mRNA SPAC4F8.01 ; colour "2" ;
chromosome1 GeneDB CDS 2675556 2675606 . - . mRNA SPAC4F8.01 ; colour "2" ;
chromosome1 GeneDB CDS 2675689 2675970 . - . mRNA SPAC4F8.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 2675399 2675413 . - . misc_feature unknown_2255 ; colour "6" ; note "ctaacttttacaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2675550 2675555 . - . misc_feature unknown_2256 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2675607 2675621 . - . misc_feature unknown_2257 ; colour "6" ; note "ctaatctttttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2675683 2675688 . - . misc_feature unknown_2258 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2675969 2675981 . - . mRNA SPAC4F8.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F8.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2677140 2678105 . + . mRNA SPAC644.04 ; systematic_id "SPAC644.04" ; colour "2" ; gene "pct1 ||| SPAC644.04" ; Alias "pct1" ; db_xref "SPD:13/13F11" ; GO "GO:0006370; mRNA capping
GO:0042803; protein homodimerization activity
GO:0004651; polynucleotide 5'-phosphatase activity
GO:0005634; nucleus
GO:0005515; protein binding
GO:0031533; mRNA capping enzyme complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12455993; date=19700101 ||| term=orthologous to S. cerevisiae YPL228W and YMR180C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "pct1" ; product "RNA 5'-triphosphatase" ; EC_number "3.1.3.33" ;
chromosome1 GeneDB CDS 2677140 2677373 . + . mRNA SPAC644.04 ; colour "2" ;
chromosome1 GeneDB CDS 2677428 2678105 . + . mRNA SPAC644.04 ; colour "2" ;
chromosome1 GeneDB misc_feature 2677260 2677289 . + . misc_feature unknown_2259 ; note "essential for dimerization (PMID: 12788946)" ;
chromosome1 GeneDB misc_feature 2677374 2677379 . + . misc_feature unknown_2260 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2677408 2677427 . + . misc_feature unknown_2261 ; colour "6" ; note "ctgattttttcttattttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2678106 2678677 . + . mRNA SPAC644.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC644.04" ; systematic_id "SPAC644.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2678568 2678626 . - . mRNA SPAC644.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC644.05c" ; systematic_id "SPAC644.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2678627 2679049 . - . mRNA SPAC644.05c ; db_xref "SPD:03/03D10" ; systematic_id "SPAC644.05c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR252W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004170; dUTP diphosphatase activity
GO:0009213; pyrimidine deoxyribonucleoside triphosphate catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC644.05c" ; product "deoxyuridine 5'-triphosphate nucleotidohydrolase (predicted)" ; EC_number "3.6.1.23" ;
chromosome1 GeneDB CDS 2678627 2679049 . - . mRNA SPAC644.05c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2679048 2679061 . - . mRNA SPAC644.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2679468 2679764 . - . mRNA SPAC644.06c ; ID "SPAC644.06c" ; db_xref "SPD:36/36C10" ; systematic_id "SPAC644.06c" ; note "mRNA from AU010220" ;
chromosome1 GeneDB CDS_parts 2679765 2681546 . - . mRNA SPAC644.06c ; systematic_id "SPAC644.06c" ; colour "2" ; db_xref "SPD:36/36C10" ; Alias "cdr1" ; synonym "nim1" ; GO "GO:0005737; cytoplasm
GO:0071341; medial cortical node
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0045736; negative regulation of cyclin- dependent protein kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0007089; traversing start control point of mitotic cell cycle
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL024W and YDR507C and YKL101W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:3448096; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=localization dependent on Cdr2; db_xref=PMID:19474789; date=20090826 ||| term=target is Wee1; qualifier=phosphorylates; db_xref=PMID:7681363; date=20091213 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:3448096; date=20100708 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:3453113; date=20100708 ||| term=phenotype, cell morphology, small cells; db_xref=PMID:3453113; qualifier=overexpression; date=20101124" ; primary_name "cdr1" ; product "NIM1 familiy serine/threonine protein kinase Cdr1/Nim1" ;
chromosome1 GeneDB CDS 2679765 2681546 . - . mRNA SPAC644.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2681545 2682362 . - . mRNA SPAC644.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 2684683 2684765 . - . tRNA SPATRNALYS.04 ; systematic_id "SPATRNALYS.04" ; GO "GO:0006414; translational elongation
GO:0033417; CTT codon-amino acid adaptor activity
GO:0005737; cytoplasm" ; gene "SPATRNALYS.04" ; product "tRNA Lysine" ; note "tRNA Lys anticodon CTT, Cove score 74.69" ;
chromosome1 GeneDB intron 2684719 2684726 . - . intron SPATRNALYS.04 ; systematic_id "SPATRNALYS.04" ; note "intron tRNA Lys anticodon CTT" ;
chromosome1 GeneDB 5'-UTR 2686102 2686405 . + . mRNA SPAC644.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2686406 2687755 . + . mRNA SPAC644.07 ; db_xref "SPD:20/20H07" ; systematic_id "SPAC644.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=disease associated, GRACILE syndrome; date=19700101 ||| term=orthologous to S. cerevisiae YDR375C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0042623; ATPase activity, coupled
GO:0016226; iron-sulfur cluster assembly
GO:0043623; cellular protein complex assembly" ; gene "SPAC644.07" ; product "mitochondrial Rieske ISP assembly ATPase (predicted)" ;
chromosome1 GeneDB CDS 2686406 2687755 . + . mRNA SPAC644.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2687756 2687821 . + . mRNA SPAC644.07 ; ID "SPAC644.07" ; db_xref "SPD:20/20H07" ; systematic_id "SPAC644.07" ; gene "SPAC644.07" ; note "mRNA from SPD136" ;
chromosome1 GeneDB 5'-UTR 2688135 2688194 . + . mRNA SPAC644.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2688195 2688898 . + . mRNA SPAC644.08 ; db_xref "SPD:08/08C07" ; systematic_id "SPAC644.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL038W; date=19700101 ||| term=haloacid dehalogenase-like hydrolase; date=20080529 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0019509; methionine salvage" ; gene "SPAC644.08" ; product "methionine salvage haloacid dehalogenase-like hydrolase (predicted)" ;
chromosome1 GeneDB CDS 2688195 2688263 . + . mRNA SPAC644.08 ; colour "7" ;
chromosome1 GeneDB CDS 2688317 2688898 . + . mRNA SPAC644.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 2688264 2688269 . + . misc_feature unknown_2262 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2688303 2688316 . + . misc_feature unknown_2263 ; colour "6" ; note "ttaacccatgctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2688899 2689072 . + . mRNA SPAC644.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC644.08" ; systematic_id "SPAC644.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2689677 2689702 . + . mRNA SPAC644.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2689703 2690992 . + . mRNA SPAC644.09 ; db_xref "SPD:44/44B10" ; systematic_id "SPAC644.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0008784; alanine racemase activity
GO:0030170; pyridoxal phosphate binding
GO:0006520; amino acid metabolism" ; gene "SPAC644.09" ; product "alanine racemase (predicted)" ;
chromosome1 GeneDB CDS 2689703 2689771 . + . mRNA SPAC644.09 ; colour "7" ;
chromosome1 GeneDB CDS 2690153 2690272 . + . mRNA SPAC644.09 ; colour "7" ;
chromosome1 GeneDB CDS 2690408 2690743 . + . mRNA SPAC644.09 ; colour "7" ;
chromosome1 GeneDB CDS 2690804 2690992 . + . mRNA SPAC644.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 2689772 2689777 . + . misc_feature unknown_2264 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2690127 2690152 . + . misc_feature unknown_2265 ; colour "6" ; note "ctaacaattgccttaatggcttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2690273 2690278 . + . misc_feature unknown_2266 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2690393 2690407 . + . misc_feature unknown_2267 ; colour "6" ; note "ctaacagtgccatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2690744 2690749 . + . misc_feature unknown_2268 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2690790 2690803 . + . misc_feature unknown_2269 ; note "splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2690993 2691120 . + . mRNA SPAC644.09 ; ID "SPAC644.09" ; db_xref "SPD:44/44B10" ; systematic_id "SPAC644.09" ; gene "SPAC644.09" ; note "mRNA from AU012014" ;
chromosome1 GeneDB 5'-UTR 2691326 2691463 . + . mRNA SPAC644.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2691464 2691874 . + . mRNA SPAC644.10 ; systematic_id "SPAC644.10" ; colour "7" ; db_xref "SPD:03/03B11" ; Alias "med11" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
; RNA polymerase II transcription mediator activity
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR112C; date=20080807 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "med11" ; product "mediator complex subunit Med11 (predicted)" ;
chromosome1 GeneDB CDS 2691464 2691798 . + . mRNA SPAC644.10 ; colour "7" ;
chromosome1 GeneDB CDS 2691859 2691874 . + . mRNA SPAC644.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 2691799 2691804 . + . misc_feature unknown_2270 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2691849 2691858 . + . misc_feature unknown_2271 ; colour "6" ; note "ttgatactag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2691875 2692150 . + . mRNA SPAC644.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC644.10" ; systematic_id "SPAC644.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2691877 2692030 . - . mRNA SPAC644.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC644.11c" ; systematic_id "SPAC644.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2692031 2693529 . - . mRNA SPAC644.11c ; systematic_id "SPAC644.11c" ; colour "7" ; gene "SPAC644.11c" ; Alias "pkp1" ; db_xref "KEGG:MAP00620; ||| SPD:24/24C08" ; GO "GO:0005739; mitochondrion
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0004740; [pyruvate dehydrogenase (lipoamide)] kinase activity
GO:0006086; acetyl-CoA biosynthesis from pyruvate" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL042C and YGL059W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "pkp1" ; product "mitochondrial pyruvate dehydrogenase (lipoamide) kinase Pkp1 (predicted)" ; EC_number "2.7.11.2" ;
chromosome1 GeneDB CDS 2692031 2692174 . - . mRNA SPAC644.11c ; colour "7" ;
chromosome1 GeneDB CDS 2692234 2693106 . - . mRNA SPAC644.11c ; colour "7" ;
chromosome1 GeneDB CDS 2693186 2693352 . - . mRNA SPAC644.11c ; colour "7" ;
chromosome1 GeneDB CDS 2693436 2693529 . - . mRNA SPAC644.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 2692175 2692191 . - . misc_feature unknown_2272 ; colour "6" ; note "ctaacaaacatgcatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2692228 2692233 . - . misc_feature unknown_2273 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2693107 2693120 . - . misc_feature unknown_2274 ; colour "6" ; note "ctaactggttgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2693180 2693185 . - . misc_feature unknown_2275 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2693353 2693370 . - . misc_feature unknown_2276 ; colour "6" ; note "ttaatttttattatgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2693430 2693435 . - . misc_feature unknown_2277 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2693528 2693745 . - . mRNA SPAC644.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 2693886 2694225 . - . LTR unknown_2278 ; note "Tf1-type LTR" ;
chromosome1 GeneDB misc_RNA 2694347 2694522 . + . misc_RNA SPNCRNA.202 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.202" ; synonym "SPNG489-90" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| term=possible UTR for SPAC644.12 (cdc5); date=20071008" ;
chromosome1 GeneDB 5'-UTR 2694717 2694757 . + . mRNA SPAC644.12 ; Alias "cdc5" ; ID "SPAC644.12" ; systematic_id "SPAC644.12" ; primary_name "cdc5" ; gene "cdc5 ||| SPAC644.12" ; note "mRNA from SPCDC" ;
chromosome1 GeneDB CDS_parts 2694758 2697334 . + . mRNA SPAC644.12 ; systematic_id "SPAC644.12" ; colour "2" ; gene "cdc5 ||| SPAC644.12" ; Alias "cdc5" ; db_xref "SPD:38/38E01" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005681; spliceosome complex
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8313892; date=19700101 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; qualifier=ts; db_xref=PMID:958201; date=20100705 ||| term=orthologous to S. cerevisiae YMR213W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cdc5" ; product "cell division control protein, splicing factor Cdc5" ;
chromosome1 GeneDB CDS 2694758 2694776 . + . mRNA SPAC644.12 ; colour "2" ;
chromosome1 GeneDB CDS 2694817 2694836 . + . mRNA SPAC644.12 ; colour "2" ;
chromosome1 GeneDB CDS 2694903 2694917 . + . mRNA SPAC644.12 ; colour "2" ;
chromosome1 GeneDB CDS 2694982 2695101 . + . mRNA SPAC644.12 ; colour "2" ;
chromosome1 GeneDB CDS 2695171 2695619 . + . mRNA SPAC644.12 ; colour "2" ;
chromosome1 GeneDB CDS 2695684 2697334 . + . mRNA SPAC644.12 ; colour "2" ;
chromosome1 GeneDB misc_feature 2694777 2694782 . + . misc_feature unknown_2279 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB intron 2694777 2694816 . + . intron SPAC644.12 ; Alias "cdc5" ; db_xref "SPD:38/38E01" ; systematic_id "SPAC644.12" ; primary_name "cdc5" ; gene "cdc5 ||| SPAC644.12" ; note "intron confirmed by EST" ;
chromosome1 GeneDB misc_feature 2694803 2694816 . + . misc_feature unknown_2280 ; colour "6" ; note "ctaacataatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2694837 2694842 . + . misc_feature unknown_2281 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2694884 2694902 . + . misc_feature unknown_2282 ; colour "6" ; note "ctaacttattggtaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2694918 2694923 . + . misc_feature unknown_2283 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2694965 2694981 . + . misc_feature unknown_2284 ; colour "6" ; note "ctaacgcaaattcctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2695102 2695107 . + . misc_feature unknown_2285 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 2695102 2695170 . + . intron SPAC644.12 ; Alias "cdc5" ; db_xref "SPD:38/38E01" ; systematic_id "SPAC644.12" ; primary_name "cdc5" ; gene "cdc5 ||| SPAC644.12" ; note "intron confirmed by EST" ;
chromosome1 GeneDB misc_feature 2695149 2695170 . + . misc_feature unknown_2286 ; colour "6" ; note "ttaacatttccttcacatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2695620 2695625 . + . misc_feature unknown_2287 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 2695620 2695683 . + . intron SPAC644.12 ; Alias "cdc5" ; db_xref "SPD:38/38E01" ; systematic_id "SPAC644.12" ; primary_name "cdc5" ; gene "cdc5 ||| SPAC644.12" ; note "intron confirmed by EST" ;
chromosome1 GeneDB misc_feature 2695668 2695683 . + . misc_feature unknown_2288 ; colour "6" ; note "ttaatctataacttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2697335 2697430 . + . mRNA SPAC644.12 ; Alias "cdc5" ; ID "SPAC644.12" ; db_xref "SPD:38/38E01" ; systematic_id "SPAC644.12" ; primary_name "cdc5" ; gene "cdc5 ||| SPAC644.12" ; note "mRNA from SPCDC" ;
chromosome1 GeneDB CDS_parts 2697418 2698095 . - . mRNA SPAC644.13c ; db_xref "SPD:07/07G10" ; systematic_id "SPAC644.13c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Yip1 family; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0016192; vesicle-mediated transport
GO:0017137; Rab GTPase binding
GO:0012505; endomembrane system
GO:0006886; intracellular protein transport" ; gene "SPAC644.13c" ; product "Rab GTPase binding (predicted)" ;
chromosome1 GeneDB CDS 2697418 2698095 . - . mRNA SPAC644.13c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2698094 2698145 . - . mRNA SPAC644.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2698420 2699006 . - . mRNA SPAC644.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC644.14c" ; systematic_id "SPAC644.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2699007 2700104 . - . mRNA SPAC644.14c ; systematic_id "SPAC644.14c" ; colour "2" ; gene "rhp51 ||| rad51 ||| SPAC644.14c" ; Alias "rhp51" ; db_xref "SPD:17/17B11" ; synonym "rad51" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RecA family; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=helix-hairpin-helix;date=19700101 ||| term=orthologous to S. cerevisiae YER095W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, assembly at damage sites is facilitated by Swi5 independently of Rhp57; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, assembly at damage sites is facilitated by Rhp57 independently of Swi5; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, gene conversion, reduced; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, crossover, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, long tract gene conversion, increased; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant produced each recombination class (gene conversion, crossover and long tract gene conversion) at frequencies similar to that of the rhp51delta single mutant; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, increased frequency of long tract gene conversion in the rhp57 delta single mutant was suppressed in the swi5delta rhp57delta double mutant, to a level similar to that observed in the rhp51 mutant; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant showed a repair profile very similar to that to the rhp51deltasingle mutant; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=gene expression, promoter contains DRE element; db_xref=PMID:11073995; date=20091230 ||| term=gene expression, transcriptionally regulated by Deb1; db_xref=PMID:11073995; date=20100303" ; GO "GO:0000794; condensed nuclear chromosome
GO:0030998; linear element
GO:0000790; nuclear chromatin
GO:0005524; ATP binding
GO:0033170; DNA-protein loading ATPase activity
GO:0003691; double-stranded telomeric DNA binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043047; single-stranded telomeric DNA binding
GO:0000724; double-strand break repair via homologous recombination
GO:0007533; mating type switching
GO:0042138; meiotic DNA double-strand break formation
GO:0000711; meiotic DNA repair synthesis
GO:0006311; meiotic gene conversion
GO:0006312; mitotic recombination
GO:0042148; strand invasion
GO:0000723; telomere maintenance" ; primary_name "rhp51" ; product "recombinase Rhp51" ;
chromosome1 GeneDB CDS 2699007 2700104 . - . mRNA SPAC644.14c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2700103 2700128 . - . mRNA SPAC644.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2700453 2700918 . + . mRNA SPAC644.15 ; systematic_id "SPAC644.15" ; colour "2" ; gene "rpp101 ||| rpp1-1 ||| SPAC644.15" ; Alias "rpp101" ; db_xref "SPD:04/04C05" ; synonym "rpp1-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL081C and YDL130W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0006414; translational elongation
GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; primary_name "rpp101" ; product "60S acidic ribosomal protein Rpp1-1" ;
chromosome1 GeneDB CDS 2700453 2700521 . + . mRNA SPAC644.15 ; colour "2" ;
chromosome1 GeneDB CDS 2700658 2700918 . + . mRNA SPAC644.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 2700522 2700527 . + . misc_feature unknown_2289 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 2700522 2700657 . + . intron SPAC644.15 ; Alias "rpp101" ; db_xref "SPD:04/04C05" ; systematic_id "SPAC644.15" ; primary_name "rpp101" ; gene "rpp101 ||| rpp1-1 ||| SPAC644.15" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2700643 2700657 . + . misc_feature unknown_2290 ; colour "6" ; note "ctaattgttgcgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2700919 2700950 . + . mRNA SPAC644.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC644.15" ; systematic_id "SPAC644.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2701612 2701628 . + . mRNA SPAC644.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2701629 2702937 . + . mRNA SPAC644.16 ; db_xref "SPD:22/22G07" ; systematic_id "SPAC644.16" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YGL044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005849; mRNA cleavage factor complex
GO:0003723; RNA binding
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation" ; gene "SPAC644.16" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB CDS 2701629 2701653 . + . mRNA SPAC644.16 ; colour "7" ;
chromosome1 GeneDB CDS 2701694 2702937 . + . mRNA SPAC644.16 ; colour "7" ;
chromosome1 GeneDB misc_feature 2701654 2701659 . + . misc_feature unknown_2291 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2701683 2701693 . + . misc_feature unknown_2292 ; colour "6" ; note "ctaataagtag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 2702997 2703776 . - . mRNA SPAC644.17c ; systematic_id "SPAC644.17c" ; colour "7" ; gene "SPAC644.17c ||| mrpl9" ; Alias "mrpl9" ; db_xref "SPD:09/09G03" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0000048; peptidyltransferase activity
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR220C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl9" ; product "mitochondrial ribosomal protein subunit L9 (predicted)" ;
chromosome1 GeneDB CDS 2702997 2703776 . - . mRNA SPAC644.17c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2703775 2703812 . - . mRNA SPAC644.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2703965 2704030 . + . misc_RNA SPNCRNA.198 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.198" ; synonym "SPNG491" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 2704253 2704904 . - . mRNA SPAC644.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC644.18c" ; systematic_id "SPAC644.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2704905 2705603 . - . mRNA SPAC644.18c ; systematic_id "SPAC644.18c" ; colour "7" ; gene "bet3 ||| SPAC644.18c" ; Alias "bet3" ; db_xref "SPD:08/08B12" ; GO "GO:0030008; TRAPP complex
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR068C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bet3" ; product "TRAPP complex subunit Bet3 (predicted)" ;
chromosome1 GeneDB CDS 2704905 2705024 . - . mRNA SPAC644.18c ; colour "7" ;
chromosome1 GeneDB CDS 2705076 2705361 . - . mRNA SPAC644.18c ; colour "7" ;
chromosome1 GeneDB CDS 2705409 2705503 . - . mRNA SPAC644.18c ; colour "7" ;
chromosome1 GeneDB CDS 2705553 2705603 . - . mRNA SPAC644.18c ; colour "7" ;
chromosome1 GeneDB misc_feature 2705025 2705040 . - . misc_feature unknown_2293 ; colour "6" ; note "ctaactgtagttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2705070 2705075 . - . misc_feature unknown_2294 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2705362 2705376 . - . misc_feature unknown_2295 ; colour "6" ; note "ctaactccatttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2705403 2705408 . - . misc_feature unknown_2296 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2705504 2705518 . - . misc_feature unknown_2297 ; colour "6" ; note "ctaagactatcaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2705547 2705552 . - . misc_feature unknown_2298 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2705602 2705900 . - . mRNA SPAC644.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC644.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snoRNA 2705950 2706037 . + . snoRNA SPSNORNA.54 ; systematic_id "SPSNORNA.54" ; product "SnoRNA (predicted)" ; note "via Ensembl pipeline" ;
chromosome1 GeneDB misc_feature 2706066 2706181 . + . misc_feature unknown_2299 ; note "nominal overlap with cosmid c644" ;
chromosome1 GeneDB CDS_parts 2706276 2707193 . - . mRNA SPAPB2B4.01c ; Alias "gpi12" ; systematic_id "SPAPB2B4.01c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR281W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0000225; N- acetylglucosaminylphosphatidylinositol deacetylase activity
GO:0005789; endoplasmic reticulum membrane" ; gene "gpi12 ||| SPAPB2B4.01c" ; primary_name "gpi12" ; product "pig-L, N-acetylglucosaminylphosphatidyl inositoldeacetylase (predicted)" ; EC_number "3.5.1.-" ;
chromosome1 GeneDB CDS 2706276 2706552 . - . mRNA SPAPB2B4.01c ; colour "7" ;
chromosome1 GeneDB CDS 2706604 2706671 . - . mRNA SPAPB2B4.01c ; colour "7" ;
chromosome1 GeneDB CDS 2706728 2706918 . - . mRNA SPAPB2B4.01c ; colour "7" ;
chromosome1 GeneDB CDS 2706983 2707193 . - . mRNA SPAPB2B4.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 2706553 2706573 . - . misc_feature unknown_2300 ; colour "6" ; note "ctaatatcatcttgtttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2706598 2706603 . - . misc_feature unknown_2301 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2706672 2706686 . - . misc_feature unknown_2302 ; colour "6" ; note "ctaatataattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2706722 2706727 . - . misc_feature unknown_2303 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2706919 2706934 . - . misc_feature unknown_2304 ; colour "6" ; note "ctaactccgattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2706977 2706982 . - . misc_feature unknown_2305 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 2708097 2708869 . + . mRNA SPAPB2B4.02 ; Alias "grx5" ; systematic_id "SPAPB2B4.02" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15796926; date=19700101 ||| term=orthologous to S. cerevisiae YPL059W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111" ; GO "GO:0005759; mitochondrial matrix
GO:0005739; mitochondrion
GO:0008794; arsenate reductase (glutaredoxin) activity
GO:0015035; protein disulfide oxidoreductase activity
GO:0016226; iron-sulfur cluster assembly
GO:0071473; cellular response to cation stress
GO:0051409; response to nitrosative stress
GO:0006970; response to osmotic stress
GO:0034599; cellular response to oxidative stress
GO:0019430; removal of superoxide radicals" ; gene "grx5 ||| SPAPB2B4.02" ; primary_name "grx5" ; product "monothiol glutaredoxin Grx5" ;
chromosome1 GeneDB CDS 2708097 2708446 . + . mRNA SPAPB2B4.02 ; colour "2" ;
chromosome1 GeneDB CDS 2708779 2708869 . + . mRNA SPAPB2B4.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 2708447 2708452 . + . misc_feature unknown_2306 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2708761 2708778 . + . misc_feature unknown_2307 ; colour "6" ; note "ttaacaatttgtctgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2708870 2709309 . + . mRNA SPAPB2B4.02 ; Alias "grx5" ; ID "SPAPB2B4.02" ; systematic_id "SPAPB2B4.02" ; primary_name "grx5" ; gene "grx5 ||| SPAPB2B4.02" ; note "mRNA from spc05768" ;
chromosome1 GeneDB 5'-UTR 2709722 2711079 . + . mRNA SPAPB2B4.03 ; Alias "cig2" ; ID "SPAPB2B4.03" ; db_xref "PMID:18488015" ; systematic_id "SPAPB2B4.03" ; gene "cig2 ||| cyc17 ||| SPAPB2B4.03" ; primary_name "cig2" ; note "From Solexa transcript SPNG492 ||| This UTR seems to be specific for the meiotic transcript" ;
chromosome1 GeneDB 5'-UTR 2710774 2711079 . + . mRNA SPAPB2B4.03 ; Alias "cig2" ; ID "SPAPB2B4.03" ; db_xref "EMBL:D28751" ; systematic_id "SPAPB2B4.03" ; gene "cig2 ||| cyc17 ||| SPAPB2B4.03" ; primary_name "cig2" ;
chromosome1 GeneDB CDS_parts 2711080 2712315 . + . mRNA SPAPB2B4.03 ; systematic_id "SPAPB2B4.03" ; colour "2" ; gene "cig2 ||| cyc17 ||| SPAPB2B4.03" ; Alias "cig2" ; synonym "cyc17" ; GO "GO:0007346; regulation of progression through mitotic cell cycle
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031137; regulation of conjugation with cellular fusion
GO:0007089; traversing start control point of mitotic cell cycle
GO:2000045; regulation of G1/S transition of mitotic cell cycle
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=B-type cyclin; db_xref=PMID:8455610; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; cv=gene_ex; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=protein sequence feature, destruction box; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR108W and YPR119W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target of Pop1; db_xref=PMID:14970237; date=20100901 ||| term=target of Pop2; db_xref=PMID:14970237; date=20100901" ; primary_name "cig2" ; product "G1/S-specific B-type cyclin Cig2" ;
chromosome1 GeneDB CDS 2711080 2712315 . + . mRNA SPAPB2B4.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2712316 2712673 . + . mRNA SPAPB2B4.03 ; Alias "cig2" ; ID "SPAPB2B4.03" ; db_xref "EMBL:D28751" ; systematic_id "SPAPB2B4.03" ; gene "cig2 ||| cyc17 ||| SPAPB2B4.03" ; primary_name "cig2" ;
chromosome1 GeneDB 3'-UTR 2712775 2713052 . - . mRNA SPAPB2B4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB2B4.04c" ; systematic_id "SPAPB2B4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2713053 2716931 . - . mRNA SPAPB2B4.04c ; systematic_id "SPAPB2B4.04c" ; synonym "pmc1" ; colour "2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, deafness ; date=20061010 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=warning, gene name conflict; date=20091118" ; GO "GO:0006816; calcium ion transport
GO:0005388; calcium-transporting ATPase activity
GO:0006874; cellualr calcium ion homeostasis
GO:0006874; cellular calcium ion homeostasis
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0005524; ATP binding
GO:0005509; calcium ion binding
GO:0006874; cellular calcium ion homeostasis
GO:0070588; transmembrane calcium ion transport" ; gene "SPAPB2B4.04c" ; product "vacuolar calcium transporting P-type ATPase P2 type, Pmc1" ; EC_number "3.6.3.8" ;
chromosome1 GeneDB CDS 2713053 2716931 . - . mRNA SPAPB2B4.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2716930 2718330 . - . mRNA SPAPB2B4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB2B4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2720805 2720953 . + . mRNA SPAPB2B4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB2B4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2720954 2722578 . + . mRNA SPAPB2B4.05 ; Alias "vma5" ; systematic_id "SPAPB2B4.05" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL080W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000221; vacuolar proton-translocating V-type ATPase, V1 domain
GO:0005524; ATP binding
GO:0007035; vacuolar acidification
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport" ; gene "vma5 ||| SPAPB2B4.05" ; primary_name "vma5" ; product "V-type ATPase V1 subunit C (predicted)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB CDS 2720954 2721100 . + . mRNA SPAPB2B4.05 ; colour "7" ;
chromosome1 GeneDB CDS 2721202 2721355 . + . mRNA SPAPB2B4.05 ; colour "7" ;
chromosome1 GeneDB CDS 2721405 2721499 . + . mRNA SPAPB2B4.05 ; colour "7" ;
chromosome1 GeneDB CDS 2721552 2721643 . + . mRNA SPAPB2B4.05 ; colour "7" ;
chromosome1 GeneDB CDS 2721748 2722008 . + . mRNA SPAPB2B4.05 ; colour "7" ;
chromosome1 GeneDB CDS 2722060 2722291 . + . mRNA SPAPB2B4.05 ; colour "7" ;
chromosome1 GeneDB CDS 2722375 2722578 . + . mRNA SPAPB2B4.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 2721101 2721106 . + . misc_feature unknown_2308 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2721181 2721201 . + . misc_feature unknown_2309 ; colour "6" ; note "ctcacatttttcccgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2721356 2721361 . + . misc_feature unknown_2310 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2721383 2721404 . + . misc_feature unknown_2311 ; colour "6" ; note "ctgacttttgcctctttaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2721500 2721505 . + . misc_feature unknown_2312 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2721532 2721551 . + . misc_feature unknown_2313 ; colour "6" ; note "ctaacttttcgatcaatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2721644 2721649 . + . misc_feature unknown_2314 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2721730 2721747 . + . misc_feature unknown_2315 ; colour "6" ; note "ctaacattttctttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2722009 2722014 . + . misc_feature unknown_2316 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2722044 2722059 . + . misc_feature unknown_2317 ; colour "6" ; note "ttaacaaaaatcatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2722292 2722297 . + . misc_feature unknown_2318 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2722360 2722374 . + . misc_feature unknown_2319 ; colour "6" ; note "ctaacactcgattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2722564 2722569 . + . misc_feature unknown_2320 ; colour "6" ; note "gtgttt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 2722735 2723660 . + . mRNA SPAPB2B4.06 ; systematic_id "SPAPB2B4.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL095W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAPB2B4.06" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 2722735 2723210 . + . mRNA SPAPB2B4.06 ; colour "10" ;
chromosome1 GeneDB CDS 2723273 2723300 . + . mRNA SPAPB2B4.06 ; colour "10" ;
chromosome1 GeneDB CDS 2723349 2723559 . + . mRNA SPAPB2B4.06 ; colour "10" ;
chromosome1 GeneDB CDS 2723608 2723660 . + . mRNA SPAPB2B4.06 ; colour "10" ;
chromosome1 GeneDB misc_feature 2723211 2723216 . + . misc_feature unknown_2321 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2723249 2723272 . + . misc_feature unknown_2322 ; colour "6" ; note "ctgattatttacagcatatttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2723301 2723306 . + . misc_feature unknown_2323 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2723331 2723348 . + . misc_feature unknown_2324 ; colour "6" ; note "ctaatatttgaattacag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 2724338 2724375 . + . mRNA SPAPB2B4.07 ; ID "SPAPB2B4.07" ; systematic_id "SPAPB2B4.07" ; gene "SPAPB2B4.07" ; note "mRNA from spc06158" ;
chromosome1 GeneDB CDS_parts 2724376 2725095 . + . mRNA SPAPB2B4.07 ; systematic_id "SPAPB2B4.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPAPB2B4.07" ; product "ubiquitin family protein, human UBTD1 homolog" ; note "possibly conserved in human, D. melanogaster and A. thaliana by mulitiple alignment" ;
chromosome1 GeneDB CDS 2724376 2725095 . + . mRNA SPAPB2B4.07 ; colour "10" ;
chromosome1 GeneDB misc_feature 2725077 2725166 . + . misc_feature unknown_2325 ; note "nominal overlap with cosmid c6F6" ;
chromosome1 GeneDB 3'-UTR 2725096 2725867 . + . mRNA SPAPB2B4.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB2B4.07" ; systematic_id "SPAPB2B4.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2726058 2726682 . + . misc_RNA SPNCRNA.204 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.204" ; synonym "SPNG502" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| This could be the UTR for SPAC6F6.01" ;
chromosome1 GeneDB 5'-UTR 2726196 2726718 . + . mRNA SPAC6F6.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F6.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2726719 2732283 . + . mRNA SPAC6F6.01 ; systematic_id "SPAC6F6.01" ; colour "2" ; gene "cch1 ||| SPAC6F6.01" ; Alias "cch1" ; db_xref "SPD:31/31B08" ; GO "GO:0005887; integral to plasma membrane
GO:0050850; positive regulation of calcium- mediated signaling
GO:0005262; calcium channel activity
GO:0070588; transmembrane calcium ion transport
GO:0032516; positive regulation of phosphoprotein phosphatase activity" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR217W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "cch1" ; product "calcium channel Cch1" ;
chromosome1 GeneDB CDS 2726719 2732283 . + . mRNA SPAC6F6.01 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2732284 2732357 . + . mRNA SPAC6F6.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F6.01" ; systematic_id "SPAC6F6.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2732468 2732523 . - . mRNA SPAC6F6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F6.02c" ; systematic_id "SPAC6F6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2732524 2733570 . - . mRNA SPAC6F6.02c ; systematic_id "SPAC6F6.02c" ; colour "2" ; gene "pof5 ||| SPAC6F6.02c" ; Alias "pof5" ; db_xref "SPD:15/15H08" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR306C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "pof5" ; product "F-box protein Pof5" ;
chromosome1 GeneDB CDS 2732524 2733570 . - . mRNA SPAC6F6.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2733569 2733731 . - . mRNA SPAC6F6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2734031 2734108 . - . mRNA SPAC6F6.03c ; ID "SPAC6F6.03c" ; db_xref "SPD:27/27E06" ; systematic_id "SPAC6F6.03c" ; gene "SPAC6F6.03c" ; note "mRNA from AU009525" ;
chromosome1 GeneDB CDS_parts 2734109 2736126 . - . mRNA SPAC6F6.03c ; db_xref "SPD:27/27E06" ; systematic_id "SPAC6F6.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR053C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=ncRNA in intron; date=20110201" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005525; GTP binding
GO:0005730; nucleolus
GO:0000055; ribosomal large subunit export from nucleus
GO:0003924; GTPase activity" ; gene "SPAC6F6.03c" ; product "ribosome export GTPase (predicted)" ;
chromosome1 GeneDB CDS 2734109 2734927 . - . mRNA SPAC6F6.03c ; colour "7" ;
chromosome1 GeneDB CDS 2735332 2736126 . - . mRNA SPAC6F6.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 2734928 2734940 . - . misc_feature unknown_2326 ; note "ctaacttttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB snoRNA 2735048 2735175 . - . snoRNA SPNCRNA.499 ; Alias "snr191" ; systematic_id "SPNCRNA.499" ; controlled_curation "term=warning, ncRNA in intron; db_xref=PMID:18641648; date=20100426 ||| term=warning, new gene; db_xref=PMID:18641648; date=20100426" ; primary_name "snr191" ; gene "snr191" ; product "small nucleolar RNA snR191" ;
chromosome1 GeneDB misc_feature 2735326 2735331 . - . misc_feature unknown_2327 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2736125 2736205 . - . mRNA SPAC6F6.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F6.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2736594 2736675 . - . mRNA SPAC6F6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F6.04c" ; systematic_id "SPAC6F6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2736676 2738145 . - . mRNA SPAC6F6.04c ; db_xref "SPD:23/23F08" ; systematic_id "SPAC6F6.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=similar to S. pombe SPAC922.05c; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; colour "7" ; gene "SPAC6F6.04c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB CDS 2736676 2738145 . - . mRNA SPAC6F6.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2738144 2738573 . - . mRNA SPAC6F6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2738681 2740459 . + . misc_RNA SPNCRNA.205 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.205" ; synonym "SPNG503" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2740496 2740538 . + . mRNA SPAC6F6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2740539 2740960 . + . mRNA SPAC6F6.05 ; systematic_id "SPAC6F6.05" ; colour "7" ; gene "SPAC6F6.05" ; Alias "ost2" ; db_xref "SPD:03/03D08" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR103C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ost2" ; product "oligosaccharyltransferase epsilon subunit Ost2 (predicted)" ; EC_number "2.4.1.119" ;
chromosome1 GeneDB CDS 2740539 2740840 . + . mRNA SPAC6F6.05 ; colour "7" ;
chromosome1 GeneDB CDS 2740894 2740960 . + . mRNA SPAC6F6.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 2740841 2740846 . + . misc_feature unknown_2328 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2740874 2740893 . + . misc_feature unknown_2329 ; note "ctaattatttgttcaactag, splice branch and acceptor seq uence" ;
chromosome1 GeneDB 3'-UTR 2740961 2741269 . + . mRNA SPAC6F6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F6.05" ; systematic_id "SPAC6F6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2741375 2741550 . - . mRNA SPAC6F6.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F6.06c" ; systematic_id "SPAC6F6.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2741551 2745018 . - . mRNA SPAC6F6.06c ; systematic_id "SPAC6F6.06c" ; colour "2" ; gene "rax2 ||| SPAC6F6.06c" ; Alias "rax2" ; db_xref "SPD:30/30E03" ; GO "GO:0031234; extrinsic to internal side of plasma membrane
GO:0031520; plasma membrane of cell tip
GO:0000767; cellular morphogenesis during conjugation
GO:0034613; cellular protein localization
GO:0061161; positive regulation of establishment of bipolar cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17085965; date=20061113 ||| term=localization dependent on microtubules and actin; db_xref=PMID:17085965; date=20061113 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR084C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "rax2" ; product "cell polarity factor Rax2" ;
chromosome1 GeneDB CDS 2741551 2745018 . - . mRNA SPAC6F6.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2745017 2745171 . - . mRNA SPAC6F6.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F6.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2745941 2745954 . - . mRNA SPAC6F6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F6.07c" ; systematic_id "SPAC6F6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2745955 2746640 . - . mRNA SPAC6F6.07c ; systematic_id "SPAC6F6.07c" ; colour "7" ; gene "rps13 ||| SPAC6F6.07c" ; Alias "rps13" ; db_xref "SPD:07/07H12" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR064W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps13" ; product "40S ribosomal protein S13 (predicted)" ;
chromosome1 GeneDB CDS 2745955 2746128 . - . mRNA SPAC6F6.07c ; colour "7" ;
chromosome1 GeneDB CDS 2746193 2746239 . - . mRNA SPAC6F6.07c ; colour "7" ;
chromosome1 GeneDB CDS 2746303 2746335 . - . mRNA SPAC6F6.07c ; colour "7" ;
chromosome1 GeneDB CDS 2746439 2746640 . - . mRNA SPAC6F6.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 2746129 2746140 . - . misc_feature unknown_2330 ; note "ctaaccctttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 2746129 2746192 . - . intron SPAC6F6.07c ; Alias "rps13" ; db_xref "SPD:07/07H12" ; systematic_id "SPAC6F6.07c" ; primary_name "rps13" ; gene "rps13 ||| SPAC6F6.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2746187 2746192 . - . misc_feature unknown_2331 ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2746240 2746250 . - . misc_feature unknown_2332 ; note "ctgacagagtgatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 2746240 2746302 . - . intron SPAC6F6.07c ; Alias "rps13" ; db_xref "SPD:07/07H12" ; systematic_id "SPAC6F6.07c" ; primary_name "rps13" ; gene "rps13 ||| SPAC6F6.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2746297 2746302 . - . misc_feature unknown_2333 ; note "gttatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2746336 2746349 . - . misc_feature unknown_2334 ; note "ctaactttgaatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 2746336 2746438 . - . intron SPAC6F6.07c ; Alias "rps13" ; db_xref "SPD:07/07H12" ; systematic_id "SPAC6F6.07c" ; primary_name "rps13" ; gene "rps13 ||| SPAC6F6.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2746433 2746438 . - . misc_feature unknown_2335 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2746639 2746658 . - . mRNA SPAC6F6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2746710 2746771 . - . mRNA SPAC6F6.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F6.08c" ; systematic_id "SPAC6F6.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 2746735 2746742 . - . promoter unknown_2336 ; note "Homol D box" ;
chromosome1 GeneDB promoter 2746758 2746767 . - . promoter unknown_2337 ; note "Homol E box" ;
chromosome1 GeneDB CDS_parts 2746772 2748009 . - . mRNA SPAC6F6.08c ; systematic_id "SPAC6F6.08c" ; colour "2" ; gene "cdc16 ||| bub2 ||| SPAC6F6.08c" ; Alias "cdc16" ; db_xref "SPD:44/44A11" ; synonym "bub2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; qualifier=ts; db_xref=PMID:762020; date=20100705 ||| term=target is Spg1; db_xref=PMID:9742395; date=19700101 ||| term=orthologous to S. cerevisiae YMR055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; spindle pole body
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0007094; mitotic spindle checkpoint
GO:0005515; protein binding
GO:0005096; GTPase activator activity
GO:0031030; negative regulation of septation initiation signaling" ; primary_name "cdc16" ; product "two-component GAP Cdc16" ;
chromosome1 GeneDB CDS 2746772 2746931 . - . mRNA SPAC6F6.08c ; colour "2" ;
chromosome1 GeneDB CDS 2747119 2747266 . - . mRNA SPAC6F6.08c ; colour "2" ;
chromosome1 GeneDB CDS 2747341 2747431 . - . mRNA SPAC6F6.08c ; colour "2" ;
chromosome1 GeneDB CDS 2747509 2748009 . - . mRNA SPAC6F6.08c ; colour "2" ;
chromosome1 GeneDB misc_feature 2746932 2746943 . - . misc_feature unknown_2338 ; note "ctaacgataaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2747113 2747118 . - . misc_feature unknown_2339 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2747267 2747289 . - . misc_feature unknown_2340 ; note "ttaactttacttttcacatatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2747335 2747340 . - . misc_feature unknown_2341 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2747432 2747446 . - . misc_feature unknown_2342 ; note "ctaactcaattacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2747503 2747508 . - . misc_feature unknown_2343 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2748008 2748140 . - . mRNA SPAC6F6.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F6.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2748910 2749067 . + . mRNA SPAC6F6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2749068 2749547 . + . mRNA SPAC6F6.09 ; systematic_id "SPAC6F6.09" ; colour "7" ; db_xref "SPD:04/04D11" ; Alias "eaf6" ; GO "GO:0043189; H4/H2A histone acetyltransferase complex
GO:0005634; nucleus
GO:0006350; transcription
GO:0006281; DNA repair
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR082C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "eaf6" ; product "NuA4 histone acetyltransferase complex subunit Eaf6 (predicted)" ;
chromosome1 GeneDB CDS 2749068 2749100 . + . mRNA SPAC6F6.09 ; colour "7" ;
chromosome1 GeneDB CDS 2749164 2749547 . + . mRNA SPAC6F6.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 2749101 2749106 . + . misc_feature unknown_2344 ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2749141 2749163 . + . misc_feature unknown_2345 ; note "ctaattctaaaacttaacag, splice branch and acceptor seq uence" ;
chromosome1 GeneDB 3'-UTR 2749790 2749977 . - . mRNA SPAC6F6.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F6.10c" ; systematic_id "SPAC6F6.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2749978 2750971 . - . mRNA SPAC6F6.10c ; systematic_id "SPAC6F6.10c" ; colour "2" ; gene "arc2 ||| arc34 ||| SPAC6F6.10c" ; Alias "arc2" ; db_xref "SPD:14/14E05" ; synonym "arc34" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0000147; actin cortical patch assembly
GO:0006897; endocytosis" ; primary_name "arc2" ; product "ARP2/3 actin-organizing complex subunit Arc34" ;
chromosome1 GeneDB CDS 2749978 2750869 . - . mRNA SPAC6F6.10c ; colour "2" ;
chromosome1 GeneDB CDS 2750910 2750971 . - . mRNA SPAC6F6.10c ; colour "2" ;
chromosome1 GeneDB misc_feature 2750870 2750880 . - . misc_feature unknown_2346 ; note "ctaatttatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2750904 2750909 . - . misc_feature unknown_2347 ; note "splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2751440 2751671 . - . mRNA SPAC6F6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F6.11c" ; systematic_id "SPAC6F6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2751672 2752806 . - . mRNA SPAC6F6.11c ; db_xref "SPD:17/17H04" ; systematic_id "SPAC6F6.11c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR027W and YEL029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008478; pyridoxal kinase activity" ; gene "SPAC6F6.11c" ; product "pyridoxine-pyridoxal-pyridoxamine kinase (predicted)" ; EC_number "2.7.1.35" ;
chromosome1 GeneDB CDS 2751672 2752152 . - . mRNA SPAC6F6.11c ; colour "7" ;
chromosome1 GeneDB CDS 2752212 2752329 . - . mRNA SPAC6F6.11c ; colour "7" ;
chromosome1 GeneDB CDS 2752387 2752575 . - . mRNA SPAC6F6.11c ; colour "7" ;
chromosome1 GeneDB CDS 2752623 2752731 . - . mRNA SPAC6F6.11c ; colour "7" ;
chromosome1 GeneDB CDS 2752774 2752806 . - . mRNA SPAC6F6.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 2752153 2752167 . - . misc_feature unknown_2348 ; note "ctgacttttacttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2752206 2752211 . - . misc_feature unknown_2349 ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2752330 2752343 . - . misc_feature unknown_2350 ; note "ctgacgctaaaaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2752381 2752386 . - . misc_feature unknown_2351 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2752576 2752590 . - . misc_feature unknown_2352 ; note "ttaacgtatttcaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2752617 2752622 . - . misc_feature unknown_2353 ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2752732 2752746 . - . misc_feature unknown_2354 ; note "ctaacaacattatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2752768 2752773 . - . misc_feature unknown_2355 ; note "gttgaa, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2752805 2752818 . - . mRNA SPAC6F6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2754695 2754767 . + . mRNA SPAC6F6.12 ; ID "SPAC6F6.12" ; db_xref "EMBL:D89155" ; systematic_id "SPAC6F6.12" ;
chromosome1 GeneDB CDS_parts 2754768 2756129 . + . mRNA SPAC6F6.12 ; db_xref "SPD:21/21B04" ; systematic_id "SPAC6F6.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YJL036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006623; protein targeting to vacuole
GO:0005737; cytoplasm
GO:0000407; pre-autophagosomal structure
GO:0005776; autophagic vacuole
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0032258; CVT pathway
GO:0034498; early endosome to Golgi transport
GO:0034727; piecemeal autophagy of nucleus" ; product "autophagy associated protein Atg24 (predicted)" ;
chromosome1 GeneDB CDS 2754768 2754899 . + . mRNA SPAC6F6.12 ; colour "7" ;
chromosome1 GeneDB CDS 2754968 2755103 . + . mRNA SPAC6F6.12 ; colour "7" ;
chromosome1 GeneDB CDS 2755192 2756129 . + . mRNA SPAC6F6.12 ; colour "7" ;
chromosome1 GeneDB misc_feature 2754900 2754905 . + . misc_feature unknown_2356 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2754900 2754967 . + . intron SPAC6F6.12 ; db_xref "EMBL:D89155 ||| SPD:21/21B04" ; systematic_id "SPAC6F6.12" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2754950 2754967 . + . misc_feature unknown_2357 ; note "cttactctatgttactag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB misc_feature 2755104 2755109 . + . misc_feature unknown_2358 ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB intron 2755104 2755191 . + . intron SPAC6F6.12 ; db_xref "EMBL:D89155 ||| SPD:21/21B04" ; systematic_id "SPAC6F6.12" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2755176 2755191 . + . misc_feature unknown_2359 ; note "ctaacactttttgtac, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB 3'-UTR 2756130 2756247 . + . mRNA SPAC6F6.12 ; ID "SPAC6F6.12" ; db_xref "EMBL:D89155 ||| SPD:21/21B04" ; systematic_id "SPAC6F6.12" ;
chromosome1 GeneDB 3'-UTR 2756391 2756497 . - . mRNA SPAC6F6.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F6.13c" ; systematic_id "SPAC6F6.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2756498 2758834 . - . mRNA SPAC6F6.13c ; db_xref "SPD:46/46G11" ; systematic_id "SPAC6F6.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL034W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TMCO4 ortholog; date=20100718" ; colour "10" ; gene "SPAC6F6.13c" ; product "DUF726 family protein" ;
chromosome1 GeneDB CDS 2756498 2758834 . - . mRNA SPAC6F6.13c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2758835 2758924 . - . mRNA SPAC6F6.13c ; ID "SPAC6F6.13c" ; systematic_id "SPAC6F6.13c" ; gene "SPAC6F6.13c" ; note "mRNA from AU009459" ;
chromosome1 GeneDB misc_feature 2759015 2760850 . + . misc_feature unknown_2360 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG506-507 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 2759155 2759709 . - . mRNA SPAC6F6.19 ; db_xref "PMID:18488015" ; systematic_id "SPAC6F6.19" ; controlled_curation "term=orthologous to S. cerevisiae YLR271W; date=20080102 ||| term=G-patch domain; date=20080102 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=human CCDC75 ortholog; date=20100728" ; colour "10" ; gene "SPAC6F6.19" ; product "RNA-binding protein, G-patch type" ;
chromosome1 GeneDB CDS 2759155 2759292 . - . mRNA SPAC6F6.19 ; colour "10" ;
chromosome1 GeneDB CDS 2759479 2759709 . - . mRNA SPAC6F6.19 ; colour "10" ;
chromosome1 GeneDB misc_feature 2759710 2762302 . + . misc_feature unknown_2361 ; note "low complexity region" ;
chromosome1 GeneDB 5'-UTR 2762278 2762301 . + . mRNA SPAC6F6.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6F6.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2762302 2763390 . + . mRNA SPAC6F6.15 ; systematic_id "SPAC6F6.15" ; colour "2" ; gene "ypt5 ||| SPAC6F6.15" ; Alias "ypt5" ; db_xref "SPD:32/32D12" ; GO "GO:0005770; late endosome
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006897; endocytosis
GO:0033157; regulation of intracellular protein transport
GO:0031338; regulation of vesicle fusion
GO:0007264; small GTPase mediated signal transduction
GO:0070314; G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Rab subfamily; date=19700101 ||| term=modification, gerenylgerenylated; cv=pt_mod; db_xref=PMID:1597466; date=19700101 ||| term=modification, carboxymethylated; cv=pt_mod; db_xref=PMID:8226998; date=19700101 ||| term=complementation, functionally complemented by mammalian rab5; db_xref=PMID:8374169; cv=complementation; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8374169; date=19700101 ||| term=orthologous to S. cerevisiae YOR089C and YKR014C and YNL093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:8374169; date=20101126" ; primary_name "ypt5" ; product "GTPase Ypt5" ;
chromosome1 GeneDB CDS 2762302 2762382 . + . mRNA SPAC6F6.15 ; colour "2" ;
chromosome1 GeneDB CDS 2762454 2762493 . + . mRNA SPAC6F6.15 ; colour "2" ;
chromosome1 GeneDB CDS 2762562 2762585 . + . mRNA SPAC6F6.15 ; colour "2" ;
chromosome1 GeneDB CDS 2762662 2762722 . + . mRNA SPAC6F6.15 ; colour "2" ;
chromosome1 GeneDB CDS 2762787 2762833 . + . mRNA SPAC6F6.15 ; colour "2" ;
chromosome1 GeneDB CDS 2762875 2762921 . + . mRNA SPAC6F6.15 ; colour "2" ;
chromosome1 GeneDB CDS 2763001 2763126 . + . mRNA SPAC6F6.15 ; colour "2" ;
chromosome1 GeneDB CDS 2763181 2763390 . + . mRNA SPAC6F6.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 2762383 2762388 . + . misc_feature unknown_2362 ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2762432 2762453 . + . misc_feature unknown_2363 ; note "ctaattgtttataataatttag, splice branch and acceptor s equence" ;
chromosome1 GeneDB misc_feature 2762494 2762499 . + . misc_feature unknown_2364 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2762540 2762561 . + . misc_feature unknown_2365 ; note "ctgacatttttcctctaaacag, splice branch and acceptor s equence" ;
chromosome1 GeneDB misc_feature 2762586 2762591 . + . misc_feature unknown_2366 ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2762641 2762661 . + . misc_feature unknown_2367 ; note "ctgactttcaaacttgttcag, splice branch and acceptor se quence" ;
chromosome1 GeneDB misc_feature 2762723 2762728 . + . misc_feature unknown_2368 ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2762772 2762786 . + . misc_feature unknown_2369 ; note "ctaactaaattttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2762834 2762839 . + . misc_feature unknown_2370 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 2762834 2762874 . + . intron SPAC6F6.15 ; Alias "ypt5" ; db_xref "SPD:32/32D12" ; systematic_id "SPAC6F6.15" ; primary_name "ypt5" ; gene "ypt5 ||| SPAC6F6.15" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2762862 2762874 . + . misc_feature unknown_2371 ; note "ttaacttggttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 2762922 2762927 . + . misc_feature unknown_2372 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2762922 2763000 . + . intron SPAC6F6.15 ; Alias "ypt5" ; db_xref "SPD:32/32D12" ; systematic_id "SPAC6F6.15" ; primary_name "ypt5" ; gene "ypt5 ||| SPAC6F6.15" ; note "confirmed intron" ;
chromosome1 GeneDB intron 2763127 2763180 . + . intron SPAC6F6.15 ; Alias "ypt5" ; db_xref "SPD:32/32D12" ; systematic_id "SPAC6F6.15" ; primary_name "ypt5" ; gene "ypt5 ||| SPAC6F6.15" ; note "confirmed intron" ;
chromosome1 GeneDB 3'-UTR 2763391 2763485 . + . mRNA SPAC6F6.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6F6.15" ; systematic_id "SPAC6F6.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2763686 2765433 . - . mRNA SPAC6F6.16c ; systematic_id "SPAC6F6.16c" ; colour "2" ; db_xref "SPD:11/11A11" ; Alias "tpz1" ; synonym "SPAC6F6.18c ||| mug169" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; cv=phenotype; db_xref=PMID:18535244; date=20080609 ||| term=human TPP1 homolog; db_xref=PMID:18535244; date=20080609 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080609 ||| term=OB fold; db_xref=PMID:18535244; date=20080609 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; date=200090806" ; GO "GO:0000781; chromosome,telomeric region
GO:0070187; telosome
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0071573; telosome complex assembly
GO:0016233; telomere end protection" ; primary_name "tpz1" ; product "Tppl homolog Tpz1" ;
chromosome1 GeneDB CDS 2763686 2764572 . - . mRNA SPAC6F6.16c ; colour "2" ;
chromosome1 GeneDB CDS 2764611 2764752 . - . mRNA SPAC6F6.16c ; colour "2" ;
chromosome1 GeneDB CDS 2764791 2764825 . - . mRNA SPAC6F6.16c ; colour "2" ;
chromosome1 GeneDB CDS 2764872 2765122 . - . mRNA SPAC6F6.16c ; colour "2" ;
chromosome1 GeneDB CDS 2765166 2765263 . - . mRNA SPAC6F6.16c ; colour "2" ;
chromosome1 GeneDB CDS 2765320 2765433 . - . mRNA SPAC6F6.16c ; colour "2" ;
chromosome1 GeneDB intron 2764573 2764610 . - . intron SPAC6F6.16c ; db_xref "PMID:18535244 ||| SPD:11/11A11" ; systematic_id "SPAC6F6.16c" ;
chromosome1 GeneDB intron 2764753 2764790 . - . intron SPAC6F6.16c ; db_xref "PMID:18535244 ||| SPD:11/11A11" ; systematic_id "SPAC6F6.16c" ;
chromosome1 GeneDB intron 2764826 2764871 . - . intron SPAC6F6.16c ; db_xref "PMID:18535244 ||| SPD:11/11A11" ; systematic_id "SPAC6F6.16c" ;
chromosome1 GeneDB intron 2765123 2765165 . - . intron SPAC6F6.16c ; db_xref "PMID:18535244 ||| SPD:11/11A11" ; systematic_id "SPAC6F6.16c" ;
chromosome1 GeneDB intron 2765264 2765319 . - . intron SPAC6F6.16c ; db_xref "PMID:18535244 ||| SPD:11/11A11" ; systematic_id "SPAC6F6.16c" ;
chromosome1 GeneDB 5'-UTR 2766283 2766369 . + . mRNA SPAC6F6.17 ; Alias "rif1" ; ID "SPAC6F6.17" ; systematic_id "SPAC6F6.17" ; primary_name "rif1" ; gene "rif1 ||| tap1 ||| SPAC6F6.17 ||| SPAPJ736.01 ||| tap11" ; note "mRNA from AY034033" ;
chromosome1 GeneDB CDS_parts 2766370 2770572 . + . mRNA SPAC6F6.17 ; systematic_id "SPAC6F6.17" ; colour "2" ; gene "rif1 ||| tap1 ||| SPAC6F6.17 ||| SPAPJ736.01 ||| tap11" ; Alias "rif1" ; db_xref "SPD:30/30G03" ; synonym "tap1 ||| tap11 ||| SPAPJ736.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YBR275C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005724; nuclear telomeric heterochromatin
GO:0005634; nucleus
GO:0000783; telomere cap complex
GO:0005515; protein binding
GO:0031848; protection from non-homologous end joining at telomere
GO:0000723; telomere maintenance
GO:0031860; telomeric 3' overhang formation" ; primary_name "rif1" ; product "telomere length regulator protein Rif1" ;
chromosome1 GeneDB CDS 2766370 2770572 . + . mRNA SPAC6F6.17 ; colour "2" ;
chromosome1 GeneDB misc_feature 2768256 2768383 . + . misc_feature unknown_2373 ; note "nominal overlap with PCR product SPAPJ736 and cosmid SPAC6F6" ;
chromosome1 GeneDB 3'-UTR 2770573 2770704 . + . mRNA SPAC6F6.17 ; Alias "rif1" ; ID "SPAC6F6.17" ; db_xref "SPD:30/30G03" ; systematic_id "SPAC6F6.17" ; primary_name "rif1" ; gene "rif1 ||| tap1 ||| SPAC6F6.17 ||| SPAPJ736.01 ||| tap11" ; note "mRNA from AY034033" ;
chromosome1 GeneDB CDS_parts 2770704 2773213 . - . mRNA SPAC1805.01c ; systematic_id "SPAC1805.01c" ; colour "7" ; gene "SPAPJ736.02c ||| SPAC1805.01c ||| ppk6" ; Alias "ppk6" ; db_xref "SPD:29/29B06" ; synonym "SPAPJ736.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YOL045W and YAL017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0045719; negative regulation of 1,6-beta-glucan biosynthetic process
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "ppk6" ; product "serine/threonine protein kinase Ppk6 (predicted)" ;
chromosome1 GeneDB CDS 2770704 2770895 . - . mRNA SPAC1805.01c ; colour "7" ;
chromosome1 GeneDB CDS 2770936 2773012 . - . mRNA SPAC1805.01c ; colour "7" ;
chromosome1 GeneDB CDS 2773108 2773156 . - . mRNA SPAC1805.01c ; colour "7" ;
chromosome1 GeneDB CDS 2773204 2773213 . - . mRNA SPAC1805.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 2770893 2770988 . + . misc_feature unknown_2374 ; note "nominal overlap with PCR product SPAPJ736, EM:AL157872 S.pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 2770893 2770989 . + . misc_feature unknown_2375 ; note "nominal overlap with cosmid SPAC1805, EM:AL117390 S.pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 2770896 2770906 . - . misc_feature unknown_2376 ; colour "6" ; note "ctaattattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2770930 2770935 . - . misc_feature unknown_2377 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2773013 2773025 . - . misc_feature unknown_2378 ; colour "6" ; note "ctaatggatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2773102 2773107 . - . misc_feature unknown_2379 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2773157 2773168 . - . misc_feature unknown_2380 ; colour "6" ; note "ttaatttaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2773198 2773203 . - . misc_feature unknown_2381 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2773212 2773440 . - . mRNA SPAC1805.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1805.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2773773 2774091 . - . mRNA SPAC1805.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1805.02c" ; systematic_id "SPAC1805.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2774092 2774928 . - . mRNA SPAC1805.02c ; db_xref "SPD:10/10H05" ; systematic_id "SPAC1805.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR207C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human ETFB ortholog; date=20100718" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0009055; electron carrier activity" ; gene "SPAC1805.02c" ; product "electron transfer flavoprotein beta subunit (predicted)" ;
chromosome1 GeneDB CDS 2774092 2774745 . - . mRNA SPAC1805.02c ; colour "10" ;
chromosome1 GeneDB CDS 2774818 2774928 . - . mRNA SPAC1805.02c ; colour "10" ;
chromosome1 GeneDB misc_feature 2774746 2774759 . - . misc_feature unknown_2382 ; colour "6" ; note "ctaatcgtgaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2774812 2774817 . - . misc_feature unknown_2383 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2775258 2775339 . - . mRNA SPAC1805.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1805.03c" ; systematic_id "SPAC1805.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2775340 2776881 . - . mRNA SPAC1805.03c ; systematic_id "SPAC1805.03c" ; colour "7" ; gene "trm13 ||| SPAC1805.03c" ; note "first intron may be incorrect" ; Alias "trm13" ; db_xref "SPD:25/25A04" ; GO "GO:0008175; tRNA methyltransferase activity
GO:0030488; tRNA methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "trm13" ; product "tRNA 2'-O-methyltransferase Trm13 (predicted)" ;
chromosome1 GeneDB CDS 2775340 2776083 . - . mRNA SPAC1805.03c ; colour "7" ;
chromosome1 GeneDB CDS 2776135 2776171 . - . mRNA SPAC1805.03c ; colour "7" ;
chromosome1 GeneDB CDS 2776251 2776598 . - . mRNA SPAC1805.03c ; colour "7" ;
chromosome1 GeneDB CDS 2776787 2776881 . - . mRNA SPAC1805.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 2776084 2776096 . - . misc_feature unknown_2384 ; colour "6" ; note "ttaaccattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2776129 2776134 . - . misc_feature unknown_2385 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2776172 2776190 . - . misc_feature unknown_2386 ; colour "6" ; note "ctaacttcatttttaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2776245 2776250 . - . misc_feature unknown_2387 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2776599 2776613 . - . misc_feature unknown_2388 ; note "ctaacatcacttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2776781 2776786 . - . misc_feature unknown_2389 ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2776880 2776907 . - . mRNA SPAC1805.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1805.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2777017 2777370 . + . mRNA SPAC1805.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1805.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2777371 2780923 . + . mRNA SPAC1805.04 ; systematic_id "SPAC1805.04" ; colour "2" ; gene "nup132 ||| SPAC1805.04" ; Alias "nup132" ; db_xref "SPD:48/48D07" ; synonym "Nup133b" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YKR082W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0031080; Nup107-160 complex
GO:0031965; nuclear membrane
GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0005643; nuclear pore
GO:0005515; protein binding
GO:0051301; cell division
GO:0007094; mitotic spindle checkpoint
GO:0031081; nuclear pore distribution
GO:0006913; nucleocytoplasmic transport
GO:0016973; poly(A)+ mRNA export from nucleus" ; primary_name "nup132" ; product "nucleoporin Nup132" ;
chromosome1 GeneDB CDS 2777371 2777554 . + . mRNA SPAC1805.04 ; colour "2" ;
chromosome1 GeneDB CDS 2777619 2780923 . + . mRNA SPAC1805.04 ; colour "2" ;
chromosome1 GeneDB misc_feature 2777555 2777560 . + . misc_feature unknown_2390 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2777597 2777618 . + . misc_feature unknown_2391 ; colour "6" ; note "ctaacatctctattcaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2780924 2780978 . + . mRNA SPAC1805.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1805.04" ; systematic_id "SPAC1805.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2781197 2781415 . + . mRNA SPAC1805.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1805.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2781416 2782934 . + . mRNA SPAC1805.05 ; systematic_id "SPAC1805.05" ; colour "2" ; gene "cki3 ||| SPAC1805.05" ; Alias "cki3" ; db_xref "SPD:33/33B03" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0030100; regulation of endocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CK2 subfamily; qualifier=predicted; db_xref=PMID:9651503; date=19700101 ||| term=orthologous to S. cerevisiae YNL154C and YHR135C and YER123W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cki3" ; product "serine/threonine protein kinase Cki3" ; EC_number "2.7.1.-" ;
chromosome1 GeneDB CDS 2781416 2781550 . + . mRNA SPAC1805.05 ; colour "2" ;
chromosome1 GeneDB CDS 2781617 2781686 . + . mRNA SPAC1805.05 ; colour "2" ;
chromosome1 GeneDB CDS 2781747 2781895 . + . mRNA SPAC1805.05 ; colour "2" ;
chromosome1 GeneDB CDS 2781969 2782934 . + . mRNA SPAC1805.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 2781551 2781556 . + . misc_feature unknown_2392 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 2781551 2781616 . + . intron SPAC1805.05 ; Alias "cki3" ; db_xref "SPD:33/33B03" ; systematic_id "SPAC1805.05" ; primary_name "cki3" ; gene "cki3 ||| SPAC1805.05" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2781597 2781616 . + . misc_feature unknown_2393 ; colour "6" ; note "ctaacgttgcattctcacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2781687 2781692 . + . misc_feature unknown_2394 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2781730 2781746 . + . misc_feature unknown_2395 ; colour "6" ; note "ctaacatttatccctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2781896 2781901 . + . misc_feature unknown_2396 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2781896 2781968 . + . intron SPAC1805.05 ; Alias "cki3" ; db_xref "SPD:33/33B03" ; systematic_id "SPAC1805.05" ; primary_name "cki3" ; gene "cki3 ||| SPAC1805.05" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 2781952 2781968 . + . misc_feature unknown_2397 ; colour "6" ; note "ttaacagggttaatcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2782935 2783133 . + . mRNA SPAC1805.05 ; Alias "cki3" ; ID "SPAC1805.05" ; db_xref "SPD:33/33B03" ; systematic_id "SPAC1805.05" ; primary_name "cki3" ; gene "cki3 ||| SPAC1805.05" ; note "mRNA from AU006854" ;
chromosome1 GeneDB 3'-UTR 2783587 2783940 . - . mRNA SPAC1805.06c ; Alias "hem2" ; ID "SPAC1805.06c" ; db_xref "EMBL:U83568 ||| SPD:14/14D03" ; systematic_id "SPAC1805.06c" ; gene "hem2 ||| SPAC1805.06c" ; primary_name "hem2" ;
chromosome1 GeneDB CDS_parts 2783941 2784930 . - . mRNA SPAC1805.06c ; systematic_id "SPAC1805.06c" ; colour "7" ; gene "hem2 ||| SPAC1805.06c" ; Alias "hem2" ; db_xref "SPD:14/14D03" ; GO "GO:0004655; porphobilinogen synthase activity
GO:0006783; heme biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060725 ||| term=orthologous to S. cerevisiae YGL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hem2" ; product "porphobilinogen synthase Hem2 (predicted)" ; EC_number "4.2.1.24" ; reserved_name "hem2" ;
chromosome1 GeneDB CDS 2783941 2784930 . - . mRNA SPAC1805.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2784931 2785086 . - . mRNA SPAC1805.06c ; Alias "hem2" ; ID "SPAC1805.06c" ; systematic_id "SPAC1805.06c" ; gene "hem2 ||| SPAC1805.06c" ; primary_name "hem2" ; note "mRNA from AU010359" ;
chromosome1 GeneDB CDS_parts 2785536 2786148 . - . mRNA SPAC1805.07c ; systematic_id "SPAC1805.07c" ; colour "2" ; gene "dad2 ||| hos2 ||| SPAC1805.07c" ; Alias "dad2" ; db_xref "SPD:42/42D12" ; synonym "hos2" ; GO "GO:0007052; mitotic spindle organization and biogenesis
GO:0042729; DASH complex
GO:0031134; sister chromatid biorientation
GO:0005816; spindle pole body
GO:0000778; condensed nuclear chromosome kinetochore
GO:0071470; cellular response to osmotic stress
GO:0000779; condensed chromosome, pericentric region" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16079914; date=19700101 ||| term=orthologous to S. cerevisiae YKR083C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, High Osmolarity Sensitive; cv=name_description; date=20090812 ||| term=phenotype, sensitive to high osmolarity; cv=phenotype; date=20090812" ; primary_name "dad2" ; product "DASH complex subunit Dad2" ;
chromosome1 GeneDB CDS 2785536 2785684 . - . mRNA SPAC1805.07c ; colour "2" ;
chromosome1 GeneDB CDS 2786013 2786148 . - . mRNA SPAC1805.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 2785685 2785697 . - . misc_feature unknown_2398 ; colour "6" ; note "ctaacaaaatcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2785685 2786012 . - . intron SPAC1805.07c ; Alias "dad2" ; db_xref "SPD:42/42D12" ; systematic_id "SPAC1805.07c" ; primary_name "dad2" ; gene "dad2 ||| hos2 ||| SPAC1805.07c" ; note "confirmed by cDNA" ;
chromosome1 GeneDB misc_feature 2786007 2786012 . - . misc_feature unknown_2399 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2788022 2788069 . + . mRNA SPAC1805.08 ; Alias "dlc1" ; ID "SPAC1805.08" ; systematic_id "SPAC1805.08" ; primary_name "dlc1" ; gene "dlc1 ||| SPAC1805.08" ; note "mRNA from AF196291" ;
chromosome1 GeneDB CDS_parts 2788070 2788514 . + . mRNA SPAC1805.08 ; systematic_id "SPAC1805.08" ; colour "2" ; gene "dlc1 ||| SPAC1805.08" ; Alias "dlc1" ; db_xref "SPD:05/05H04" ; GO "GO:0030989; horsetail nuclear movement
GO:0000235; astral microtubule
GO:0000742; karyogamy during conjugation with cellular fusion
GO:0007131; meiotic recombination
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0030286; dynein complex
GO:0030981; cortical microtubule cytoskeleton
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER071C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dlc1" ; product "dynein light chain Dlc1" ;
chromosome1 GeneDB CDS 2788070 2788078 . + . mRNA SPAC1805.08 ; colour "2" ;
chromosome1 GeneDB CDS 2788128 2788238 . + . mRNA SPAC1805.08 ; colour "2" ;
chromosome1 GeneDB CDS 2788299 2788514 . + . mRNA SPAC1805.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 2788079 2788084 . + . misc_feature unknown_2400 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2788079 2788127 . + . intron SPAC1805.08 ; Alias "dlc1" ; db_xref "SPD:05/05H04" ; systematic_id "SPAC1805.08" ; primary_name "dlc1" ; gene "dlc1 ||| SPAC1805.08" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 2788112 2788127 . + . misc_feature unknown_2401 ; colour "6" ; note "ttgattatgaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2788239 2788244 . + . misc_feature unknown_2402 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2788239 2788298 . + . intron SPAC1805.08 ; Alias "dlc1" ; db_xref "SPD:05/05H04" ; systematic_id "SPAC1805.08" ; primary_name "dlc1" ; gene "dlc1 ||| SPAC1805.08" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 2788278 2788298 . + . misc_feature unknown_2403 ; colour "6" ; note "ctaactttatgtctcatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2788515 2788718 . + . mRNA SPAC1805.08 ; Alias "dlc1" ; ID "SPAC1805.08" ; db_xref "SPD:05/05H04" ; systematic_id "SPAC1805.08" ; primary_name "dlc1" ; gene "dlc1 ||| SPAC1805.08" ; note "mRNA from AF196291" ;
chromosome1 GeneDB 5'-UTR 2789063 2789089 . + . mRNA SPAC1805.18 ; db_xref "PMID:21270388" ; systematic_id "SPAC1805.18" ;
chromosome1 GeneDB CDS_parts 2789090 2789377 . + . mRNA SPAC1805.18 ; Alias "new2" ; systematic_id "SPAC1805.18" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "new2" ; gene "SPAC1805.18" ; product "sequence orphan" ; note "conserved in japonicus" ;
chromosome1 GeneDB CDS 2789090 2789377 . + . mRNA SPAC1805.18 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 2789378 2789590 . + . mRNA SPAC1805.18 ; db_xref "PMID:21270388" ; systematic_id "SPAC1805.18" ;
chromosome1 GeneDB snoRNA 2789709 2789981 . + . snoRNA SPSNORNA.52 ; Alias "snR101" ; db_xref "EMBL:AJ632019 ||| PMID:15716270" ; systematic_id "SPSNORNA.52" ; gene "SPSNORNA.52" ; primary_name "snR101" ; product "small nucleolar RNA snR101" ;
chromosome1 GeneDB CDS_parts 2790199 2791221 . - . mRNA SPAC1805.09c ; systematic_id "SPAC1805.09c" ; colour "7" ; gene "fmt1 ||| SPAC1805.09c" ; Alias "fmt1" ; db_xref "SPD:15/15C11" ; GO "GO:0005739; mitochondrion
GO:0004479; methionyl-tRNA formyltransferase activity
GO:0006431; methionyl-tRNA aminoacylation
GO:0006413; translational initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fmt1" ; product "methionyl-tRNA formyltransferase Fmt1 (predicted)" ;
chromosome1 GeneDB CDS 2790199 2791221 . - . mRNA SPAC1805.09c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2791098 2791242 . + . mRNA SPAC1805.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1805.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2791243 2792826 . + . mRNA SPAC1805.10 ; db_xref "SPD:25/25E04" ; systematic_id "SPAC1805.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1805.10" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2791243 2792826 . + . mRNA SPAC1805.10 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 2792839 2793016 . - . mRNA SPAC1805.11c ; Alias "rps2602" ; ID "SPAC1805.11c" ; db_xref "SPD:04/04B03" ; systematic_id "SPAC1805.11c" ; primary_name "rps2602" ; gene "rps2602 ||| rps26-2 ||| SPAC1805.11c" ; note "mRNA from AU010643" ;
chromosome1 GeneDB CDS_parts 2793017 2793476 . - . mRNA SPAC1805.11c ; systematic_id "SPAC1805.11c" ; colour "7" ; gene "rps2602 ||| rps26-2 ||| SPAC1805.11c" ; Alias "rps2602" ; db_xref "SPD:04/04B03" ; synonym "rps26-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL189C and YER131W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps2602" ; product "40S ribosomal protein S26 (predicted)" ;
chromosome1 GeneDB CDS 2793017 2793252 . - . mRNA SPAC1805.11c ; colour "7" ;
chromosome1 GeneDB CDS 2793353 2793476 . - . mRNA SPAC1805.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 2793253 2793267 . - . misc_feature unknown_2404 ; colour "6" ; note "ctgacacatatttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2793253 2793352 . - . intron SPAC1805.11c ; Alias "rps2602" ; db_xref "SPD:04/04B03" ; systematic_id "SPAC1805.11c" ; primary_name "rps2602" ; gene "rps2602 ||| rps26-2 ||| SPAC1805.11c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2793347 2793352 . - . misc_feature unknown_2405 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2794057 2794337 . - . mRNA SPAC1805.12c ; Alias "uep1" ; ID "SPAC1805.12c" ; db_xref "SPD:51/51A12" ; systematic_id "SPAC1805.12c" ; primary_name "uep1" ; gene "uep1 ||| ubi2 ||| SPAC1805.12c" ; note "mRNA from AU014421" ;
chromosome1 GeneDB CDS_parts 2794338 2794724 . - . mRNA SPAC1805.12c ; systematic_id "SPAC1805.12c" ; colour "2" ; gene "uep1 ||| ubi2 ||| SPAC1805.12c" ; Alias "uep1" ; db_xref "SPD:51/51A12" ; synonym "ubi2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ribosomal-ubiquitin fusion protein; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL148W and YKR094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis and assembly
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; protein biosynthesis" ; primary_name "uep1" ; product "ribosomal-ubiquitin fusion protein Ubi2" ;
chromosome1 GeneDB CDS 2794338 2794724 . - . mRNA SPAC1805.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2794723 2794781 . - . mRNA SPAC1805.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1805.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2794903 2794937 . + . mRNA SPAC1805.13 ; Alias "rpl14" ; ID "SPAC1805.13" ; systematic_id "SPAC1805.13" ; primary_name "rpl14" ; gene "rpl14 ||| SPAC1805.13" ; note "mRNA from AF055375" ;
chromosome1 GeneDB CDS_parts 2794938 2795586 . + . mRNA SPAC1805.13 ; systematic_id "SPAC1805.13" ; colour "7" ; gene "rpl14 ||| SPAC1805.13" ; Alias "rpl14" ; db_xref "SPD:42/42F08" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL006W and YHL001W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl14" ; product "60S ribosomal protein L14 (predicted)" ;
chromosome1 GeneDB CDS 2794938 2795045 . + . mRNA SPAC1805.13 ; colour "7" ;
chromosome1 GeneDB CDS 2795290 2795586 . + . mRNA SPAC1805.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 2795046 2795051 . + . misc_feature unknown_2406 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2795046 2795289 . + . intron SPAC1805.13 ; Alias "rpl14" ; db_xref "SPD:42/42F08" ; systematic_id "SPAC1805.13" ; primary_name "rpl14" ; gene "rpl14 ||| SPAC1805.13" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2795277 2795289 . + . misc_feature unknown_2407 ; colour "6" ; note "ctgacatttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2795587 2795607 . + . mRNA SPAC1805.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1805.13" ; systematic_id "SPAC1805.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2795957 2796468 . + . mRNA SPAC1805.14 ; ID "SPAC1805.14" ; db_xref "PMID:18488015" ; systematic_id "SPAC1805.14" ; gene "SPAC1805.14" ; note "From Solexa transcript SPNG520" ;
chromosome1 GeneDB CDS_parts 2796469 2797827 . + . mRNA SPAC1805.14 ; db_xref "SPD:21/21A11" ; systematic_id "SPAC1805.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1805.14" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2796469 2797827 . + . mRNA SPAC1805.14 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 2797828 2797918 . + . mRNA SPAC1805.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1805.14" ; systematic_id "SPAC1805.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2797970 2798022 . - . mRNA SPAC1805.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1805.15c" ; systematic_id "SPAC1805.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2798023 2800231 . - . mRNA SPAC1805.15c ; systematic_id "SPAC1805.15c" ; colour "2" ; gene "pub2 ||| SPAC1805.15c" ; Alias "pub2" ; db_xref "SPD:50/50A09" ; GO "GO:0051285; cell cortex of cell tip
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004842; ubiquitin protein ligase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; db_xref=PMID:11956316; date=20060530 ||| term=WW domain; date=19700101 ||| term=C2 domain; date=19700101 ||| term=gene expression, constitutive; cv=gene_ex; db_xref=PMID:11956316; date=19700101 ||| term=orthologous to S. cerevisiae YER125W; date=19700101 ||| term=modification, ubiquitinated; residue=Cys639; db_xref=PMID:11956316; evidence=IDA; cv=pt_mod; date=20081001 ||| term=gene expression, expressed in response to nitrogen starvation; db_xref=PMID:11956316; cv=gene_ex; evidence=IEP; date=20081001 ||| term=Nedd4/Rsp5 family; db_xref=PMID:11956316; date=20081001 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=complementation, functionally complemented by S. cerevisiae YER125W; db_xref=PMID:11956316; date=20100923 ||| term=disease associated, liddle syndrome; date=20101102 ||| term=human NEDD4 and NEDD4L ortholog; date=20101102" ; primary_name "pub2" ; product "HECT-type ubiquitin-protein ligase Pub2" ;
chromosome1 GeneDB CDS 2798023 2798122 . - . mRNA SPAC1805.15c ; colour "2" ;
chromosome1 GeneDB CDS 2798164 2799766 . - . mRNA SPAC1805.15c ; colour "2" ;
chromosome1 GeneDB CDS 2799862 2799995 . - . mRNA SPAC1805.15c ; colour "2" ;
chromosome1 GeneDB CDS 2800053 2800231 . - . mRNA SPAC1805.15c ; colour "2" ;
chromosome1 GeneDB misc_feature 2798123 2798135 . - . misc_feature unknown_2408 ; colour "6" ; note "ctaatttgaacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2798123 2798163 . - . intron SPAC1805.15c ; Alias "pub2" ; db_xref "SPD:50/50A09" ; systematic_id "SPAC1805.15c" ; primary_name "pub2" ; gene "pub2 ||| SPAC1805.15c" ; note "confirmed by est" ;
chromosome1 GeneDB misc_feature 2798158 2798163 . - . misc_feature unknown_2409 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2799767 2799786 . - . misc_feature unknown_2410 ; colour "6" ; note "ctaattcttttttctaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2799856 2799861 . - . misc_feature unknown_2411 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2799996 2800016 . - . misc_feature unknown_2412 ; colour "6" ; note "ctaatgatttatttcttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2800047 2800052 . - . misc_feature unknown_2413 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2800230 2800390 . - . mRNA SPAC1805.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1805.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2800665 2800952 . - . mRNA SPAC1805.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1805.16c" ; systematic_id "SPAC1805.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2800953 2801900 . - . mRNA SPAC1805.16c ; db_xref "SPD:13/13C10" ; systematic_id "SPAC1805.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0004731; purine-nucleoside phosphorylase activity
GO:0006152; purine nucleoside catabolic process
GO:0034356; NAD biosynthesis via nicotinamide riboside salvage pathway" ; colour "7" ; gene "SPAC1805.16c" ; product "purine nucleoside phosphorylase (predicted)" ;
chromosome1 GeneDB CDS 2800953 2801900 . - . mRNA SPAC1805.16c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2801899 2802041 . - . mRNA SPAC1805.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1805.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2802514 2802681 . + . misc_RNA SPNCRNA.208 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.208" ; synonym "SPNG524" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_feature 2802692 2807406 . + . misc_feature unknown_2414 ; note "nominal overlap with cosmid SPAC1B2 and cosmid SPAC1805" ;
chromosome1 GeneDB tRNA 2802761 2802858 . - . tRNA SPATRNALEU.02 ; systematic_id "SPATRNALEU.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033411; TAA codon-amino acid adaptor activity" ; gene "SPATRNALEU.02" ; product "tRNA Leucine" ; note "tRNA Leu anticodon TAA, Cove score 44.02" ;
chromosome1 GeneDB intron 2802805 2802820 . - . intron SPATRNALEU.02 ; systematic_id "SPATRNALEU.02" ; note "intron tRNA Leu anticodon TAA" ;
chromosome1 GeneDB 5'-UTR 2804406 2804507 . + . mRNA SPAC1805.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1805.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2804508 2807744 . + . mRNA SPAC1805.17 ; systematic_id "SPAC1805.17" ; colour "2" ; gene "crm1 ||| caf2 ||| SPAC1805.17 ||| SPAC1B2.01" ; Alias "crm1" ; db_xref "SPD:30/30C01" ; synonym "caf2 ||| SPAC1B2.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=gene expression, expression cell cycle regulated; db_xref=PMID:9368044; cv=gene_ex; date=19700101 ||| term=target of Leptomycin B; db_xref=PMID:10430904; date=19700101 ||| term=orthologous to S. cerevisiae YGR218W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Chromosome Region Maintenance; date=20090725 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:2647765; date=20100727" ; GO "GO:0005643; nuclear pore
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0008565; protein transporter activity
GO:0071313; cellular response to caffeine
GO:0034599; cellular response to oxidative stress
GO:0051168; nuclear export
GO:0006611; protein export from nucleus
GO:0000055; ribosomal large subunit export from nucleus" ; primary_name "crm1" ; product "importin family nuclear export receptor Crm1" ;
chromosome1 GeneDB CDS 2804508 2807744 . + . mRNA SPAC1805.17 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2807745 2808253 . + . mRNA SPAC1805.17 ; Alias "crm1" ; ID "SPAC1805.17" ; db_xref "SPD:30/30C01" ; systematic_id "SPAC1805.17" ; primary_name "crm1" ; gene "crm1 ||| caf2 ||| SPAC1805.17 ||| SPAC1B2.01" ; note "mRNA from spc05887 107 486" ;
chromosome1 GeneDB 3'-UTR 2808475 2808541 . - . mRNA SPAC1B2.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B2.02c" ; systematic_id "SPAC1B2.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2808542 2809807 . - . mRNA SPAC1B2.02c ; systematic_id "SPAC1B2.02c" ; colour "7" ; gene "ugo1 ||| SPAC1B2.02c" ; Alias "ugo1" ; db_xref "SPD:20/20C05" ; GO "GO:0005741; mitochondrial outer membrane
GO:0008053; mitochondrial fusion
GO:0006839; mitochondrial transport
GO:0022857; transmembrane transporter activity
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR470C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=20091118" ; primary_name "ugo1" ; product "mitochondrial fusion and transport protein Ugo1 (predicted)" ;
chromosome1 GeneDB CDS 2808542 2809807 . - . mRNA SPAC1B2.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2809806 2809960 . - . mRNA SPAC1B2.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B2.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2810265 2810692 . - . misc_RNA SPNCRNA.75 ; systematic_id "SPNCRNA.75" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.75" ; product "non-coding RNA (predicted)" ; note "mRNA from spc01047 not associated with an ORF; possible 3' UTR of SPAC1B2.03c (similar profile on microarray) ||| microarray expression profile on this strand (pers comm. Jurg Bahler)" ;
chromosome1 GeneDB CDS_parts 2811438 2812485 . - . mRNA SPAC1B2.03c ; db_xref "SPD:16/16A03" ; systematic_id "SPAC1B2.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL196C and YCR034W and YLR372W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0019368; fatty acid elongation, unsaturated fatty acid
GO:0009922; fatty acid elongase activity
GO:0005789; endoplasmic reticulum membrane
GO:0030148; sphingolipid biosynthesis" ; gene "SPAC1B2.03c" ; product "GNS1/SUR4 family protein (predicted)" ;
chromosome1 GeneDB CDS 2811438 2812368 . - . mRNA SPAC1B2.03c ; colour "7" ;
chromosome1 GeneDB CDS 2812412 2812485 . - . mRNA SPAC1B2.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 2812369 2812383 . - . misc_feature unknown_2415 ; colour "6" ; note "ctaactttggaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2812406 2812411 . - . misc_feature unknown_2416 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2812484 2812493 . - . mRNA SPAC1B2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2814305 2814367 . + . mRNA SPAC1B2.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B2.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2814368 2815201 . + . mRNA SPAC1B2.04 ; systematic_id "SPAC1B2.04" ; colour "7" ; gene "cox6 ||| SPAC1B2.04" ; Alias "cox6" ; db_xref "SPD:10/10G12" ; GO "GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration
GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0006123; mitochondrial electron transport, cytochrome c to oxygen" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cox6" ; product "cytochrome c oxidase subunit VI (predicted)" ;
chromosome1 GeneDB CDS 2814368 2814516 . + . mRNA SPAC1B2.04 ; colour "7" ;
chromosome1 GeneDB CDS 2814928 2815201 . + . mRNA SPAC1B2.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 2814517 2814522 . + . misc_feature unknown_2417 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2814916 2814927 . + . misc_feature unknown_2418 ; colour "6" ; note "ctaactacgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2815202 2815405 . + . mRNA SPAC1B2.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B2.04" ; systematic_id "SPAC1B2.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2815681 2815941 . + . mRNA SPAC1B2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2815942 2818185 . + . mRNA SPAC1B2.05 ; systematic_id "SPAC1B2.05" ; colour "2" ; gene "mcm5 ||| nda4 ||| SPAC3F10.01 ||| SPAC1B2.05" ; Alias "mcm5" ; db_xref "SPD:28/28A08" ; synonym "nda4 ||| SPAC3F10.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YLR274W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:8298187; date=20100727" ; GO "GO:0006270; DNA replication initiation
GO:0042555; MCM complex
GO:0000084; S phase of mitotic cell cycle
GO:0005634; nucleus
GO:0005656; pre-replicative complex
GO:0005515; protein binding
GO:0006271; DNA strand elongation during DNA replication
GO:0004003; ATP-dependent DNA helicase activity
GO:0031261; DNA replication preinitiation complex
GO:0031390; nuclear replication fork" ; primary_name "mcm5" ; product "MCM complex subunit Mcm5" ;
chromosome1 GeneDB CDS 2815942 2817623 . + . mRNA SPAC1B2.05 ; colour "2" ;
chromosome1 GeneDB CDS 2817665 2818037 . + . mRNA SPAC1B2.05 ; colour "2" ;
chromosome1 GeneDB CDS 2818078 2818185 . + . mRNA SPAC1B2.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 2816154 2816290 . - . misc_feature unknown_2419 ; note "nominal overlap with cosmid c1B2" ;
chromosome1 GeneDB misc_feature 2816154 2816290 . + . misc_feature unknown_2420 ; note "nominal overlap with cosmid SPAC3F10, EM:Z69369 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 2817624 2817629 . + . misc_feature unknown_2421 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 2817652 2817664 . + . misc_feature unknown_2422 ; colour "2" ; note "splice branch and acceptor sequence, ctaatggatttag" ;
chromosome1 GeneDB misc_feature 2818038 2818043 . + . misc_feature unknown_2423 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB 3'-UTR 2818046 2818255 . - . mRNA SPAC3F10.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3F10.02c" ; systematic_id "SPAC3F10.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2818063 2818077 . + . misc_feature unknown_2424 ; colour "2" ; note "splice branch and acceptor sequence, ctaacataatttag" ;
chromosome1 GeneDB 3'-UTR 2818186 2818597 . + . mRNA SPAC1B2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B2.05" ; systematic_id "SPAC1B2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2818256 2820781 . - . mRNA SPAC3F10.02c ; systematic_id "SPAC3F10.02c" ; colour "2" ; gene "trk1 ||| sptrk ||| SPAC3F10.02c" ; Alias "trk1" ; db_xref "SPD:29/29C02" ; synonym "sptrk" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL129C and YKR050W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0015079; potassium ion transporter activity
GO:0006813; potassium ion transport
GO:0030007; potassium ion homeostasis
GO:0006813; potassium ion transport
GO:0033554; cellular response to stress
GO:0005886; plasma membrane
GO:0042391; regulation of membrane potential
GO:0030003; cation homeostasis
GO:0042493; response to drug
GO:0071473; cellular response to cation stress" ; primary_name "trk1" ; product "potassium ion transporter Trk1" ;
chromosome1 GeneDB CDS 2818256 2820781 . - . mRNA SPAC3F10.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2820780 2821126 . - . mRNA SPAC3F10.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3F10.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2821400 2821485 . + . mRNA SPAC3F10.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3F10.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2821486 2823444 . + . mRNA SPAC3F10.03 ; systematic_id "SPAC3F10.03" ; colour "7" ; gene "SPAC3F10.03 ||| grs1" ; Alias "grs1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:27/27A09" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004820; glycine-tRNA ligase activity
GO:0006426; glycyl-tRNA aminoacylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR121C and YPR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "grs1" ; product "mitochondrial and cytoplasmic glycine-tRNA ligase Grs1 (predicted)" ; EC_number "6.1.1.14" ;
chromosome1 GeneDB CDS 2821486 2823444 . + . mRNA SPAC3F10.03 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2823765 2823966 . + . mRNA SPAC3F10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3F10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2823967 2825463 . + . mRNA SPAC3F10.04 ; systematic_id "SPAC3F10.04" ; colour "2" ; gene "gsa1 ||| gsh2 ||| SPAC3F10.04" ; Alias "gsa1" ; db_xref "SPD:24/24C01" ; synonym "gsh2" ; GO "GO:0004363; glutathione synthase activity
GO:0006750; glutathione biosynthesis
GO:0046938; phytochelatin biosynthesis
GO:0033554; cellular response to stress
GO:0071276; cellular response to cadmium ion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:12787490; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YOL049W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=subunit composition, homodimeric; cv=subunit_composition; db_xref=PMID:12734194; date=20091223 ||| term=subunit composition, heterotetrameric; cv=subunit_composition; db_xref=PMID:12734194; date=20091223 ||| term=modification, proteolytic cleavage; cv=pt_mod; db_xref=PMID:12734194; date=20091223 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "gsa1" ; product "glutathione synthetase large subunit Gsa1" ; EC_number "6.3.2.3" ;
chromosome1 GeneDB CDS 2823967 2825463 . + . mRNA SPAC3F10.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2825464 2825581 . + . mRNA SPAC3F10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3F10.04" ; systematic_id "SPAC3F10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2825583 2825837 . - . mRNA SPAC3F10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3F10.05c" ; systematic_id "SPAC3F10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2825838 2826818 . - . mRNA SPAC3F10.05c ; systematic_id "SPAC3F10.05c" ; colour "10" ; gene "SPAC3F10.05c ||| mug113" ; note "this has just moved into a Pfam nuclease, awaiting accession" ; Alias "mug113" ; db_xref "SPD:14/14B05" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL034W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Bacteria; date=20090202 ||| term=T5orf172 family; qualifier=false_negative; date=20100415" ; primary_name "mug113" ; product "T5orf172 family protein" ;
chromosome1 GeneDB CDS 2825838 2826818 . - . mRNA SPAC3F10.05c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2826817 2827013 . - . mRNA SPAC3F10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3F10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2827047 2828687 . - . mRNA SPAC3F10.06c ; db_xref "SPD:26/26B09" ; systematic_id "SPAC3F10.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR283C; date=19700101 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=genome organization, co- expressed with adjacent gene; qualifier=predicted; cv=genome_org; date=20091113 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0043399; tRNA A64-2'-O-ribosylphosphate transferase activity
GO:0019988; charged-tRNA modification
GO:0005737; cytoplasm" ; gene "SPAC3F10.06c" ; product "initiator methionine tRNA 2'-O-ribosyl phosphate transferase (predicted)" ;
chromosome1 GeneDB CDS 2827047 2828349 . - . mRNA SPAC3F10.06c ; colour "7" ;
chromosome1 GeneDB CDS 2828629 2828687 . - . mRNA SPAC3F10.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 2828350 2828366 . - . misc_feature unknown_2425 ; colour "2" ; note "splice branch and acceptor sequence, ctaacactaatttca ag" ;
chromosome1 GeneDB misc_feature 2828623 2828628 . - . misc_feature unknown_2426 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB CDS_parts 2828666 2829184 . - . mRNA SPAC3F10.07c ; systematic_id "SPAC3F10.07c" ; colour "7" ; gene "SPAC3F10.07c ||| mug91" ; Alias "mug91" ; db_xref "SPD:05/05B06" ; GO "GO:0042406; extrinsic to endoplasmic reticulum membrane
GO:0031211; palmitoyltransferase complex
GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0018345; protein palmitoylation
GO:0006612; protein targeting to membrane" ; controlled_curation "term=orthologous to S. cerevisiae YOL110W; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=genome organization, co- expressed with adjacent gene; qualifier=predicted; cv=genome_org; date=20091113 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; primary_name "mug91" ; product "palmitoyltransferase complex Erf4 (predicted)" ;
chromosome1 GeneDB CDS 2828666 2829184 . - . mRNA SPAC3F10.07c ; colour "7" ;
chromosome1 GeneDB misc_RNA 2830376 2831519 . + . misc_RNA SPNCRNA.527 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.527" ; synonym "SPNGAF9" ; product "non-coding RNA (predicted)" ; note "affey" ;
chromosome1 GeneDB 3'-UTR 2831579 2831809 . - . mRNA SPAC3F10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3F10.08c" ; systematic_id "SPAC3F10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2831810 2832589 . - . mRNA SPAC3F10.08c ; db_xref "SPD:09/09G04" ; systematic_id "SPAC3F10.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL019W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing
GO:0005737; cytoplasm" ; gene "SPAC3F10.08c" ; product "rRNA processing protein Faf1 (predicted)" ;
chromosome1 GeneDB CDS 2831810 2832589 . - . mRNA SPAC3F10.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2832588 2832622 . - . mRNA SPAC3F10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3F10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2832734 2832795 . + . mRNA SPAC3F10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3F10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2832796 2833974 . + . mRNA SPAC3F10.09 ; systematic_id "SPAC3F10.09" ; colour "7" ; gene "SPAC3F10.09" ; note "possibly his6 from map position" ; db_xref "SPD:18/18F10" ; GO "GO:0000105; histidine biosynthesis
GO:0003949; 1-(5-phosphoribosyl)-5-[(5- phosphoribosy lamino)methylideneamino]imidazole-4- carboxamide isomerase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL020C; date=19700101 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino]imidazole-4-carboxamide isomerase (predicted)" ; EC_number "5.3.1.16" ;
chromosome1 GeneDB CDS 2832796 2833036 . + . mRNA SPAC3F10.09 ; colour "7" ;
chromosome1 GeneDB CDS 2833099 2833169 . + . mRNA SPAC3F10.09 ; colour "7" ;
chromosome1 GeneDB CDS 2833426 2833529 . + . mRNA SPAC3F10.09 ; colour "7" ;
chromosome1 GeneDB CDS 2833596 2833974 . + . mRNA SPAC3F10.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 2833037 2833042 . + . misc_feature unknown_2427 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 2833071 2833098 . + . misc_feature unknown_2428 ; colour "2" ; note "splice branch and acceptor sequence, ttaattattttacaa cttacaaatgaag" ;
chromosome1 GeneDB misc_feature 2833170 2833175 . + . misc_feature unknown_2429 ; colour "2" ; note "splice donor sequence, gtaaat" ;
chromosome1 GeneDB misc_feature 2833412 2833425 . + . misc_feature unknown_2430 ; colour "2" ; note "splice branch and acceptor sequence, ctaactttgtctag" ;
chromosome1 GeneDB misc_feature 2833530 2833535 . + . misc_feature unknown_2431 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB misc_feature 2833577 2833595 . + . misc_feature unknown_2432 ; colour "2" ; note "splice branch and acceptor sequence, ttaataacaaaactt acag" ;
chromosome1 GeneDB CDS_parts 2833891 2834988 . - . mRNA SPAC3F10.10c ; systematic_id "SPAC3F10.10c" ; colour "2" ; gene "map3 ||| SPAC3F10.10c" ; Alias "map3" ; db_xref "SPD:17/17B12" ; GO "GO:0004932; mating-type factor pheromone receptor activity
GO:0005886; plasma membrane
GO:0007186; G-protein coupled receptor protein signaling pathway
GO:0045836; positive regulation of meiosis
GO:0032005; signal transduction during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL178C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "map3" ; product "pheromone M-factor receptor Map3" ;
chromosome1 GeneDB CDS 2833891 2834988 . - . mRNA SPAC3F10.10c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2833975 2834876 . + . mRNA SPAC3F10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3F10.09" ; systematic_id "SPAC3F10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2837121 2837267 . - . mRNA SPAC3F10.11c ; ID "SPAC3F10.11c" ; db_xref "SPD:48/48G05" ; systematic_id "SPAC3F10.11c" ; gene "SPAC3F10.11c ||| abc2" ; note "mRNA from SPD89231" ;
chromosome1 GeneDB CDS_parts 2837268 2841659 . - . mRNA SPAC3F10.11c ; systematic_id "SPAC3F10.11c" ; colour "2" ; gene "SPAC3F10.11c ||| abc2" ; Alias "abc2" ; db_xref "SPD:48/48G05" ; GO "GO:0000329; vacuolar membrane
GO:0071997; glutathione S-conjugate-transporting ATPase activity
GO:0071992; phytochelatin transmembrane transporter
GO:0071276; cellular response to cadmium ion
GO:0071996; glutathione import into vacuole
GO:0071995; phytochelatin import into vacuole" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=MDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YLL048C and YDR135C and YLL015W and YHL035C and YGR281W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "abc2" ; product "glutathione S-conjugate-exporting ATPase Abc2" ;
chromosome1 GeneDB CDS 2837268 2841659 . - . mRNA SPAC3F10.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2841658 2841809 . - . mRNA SPAC3F10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3F10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2842244 2842316 . - . mRNA SPAC3F10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3F10.12c" ; systematic_id "SPAC3F10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2842317 2842922 . - . mRNA SPAC3F10.12c ; db_xref "SPD:06/06G04" ; systematic_id "SPAC3F10.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100204 ||| term=human TFEC ortholog; date=20100204" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0032569; gene-specific transcription from RNA polymerase II promoter" ; gene "SPAC3F10.12c" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB CDS 2842317 2842922 . - . mRNA SPAC3F10.12c ; colour "7" ;
chromosome1 GeneDB LTR 2843759 2844091 . - . LTR unknown_2433 ; note "tf2-type LTR" ;
chromosome1 GeneDB tRNA 2844674 2844745 . - . tRNA SPATRNATHR.03 ; systematic_id "SPATRNATHR.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033445; AGT codon-amino acid adaptor activity" ; gene "SPATRNATHR.03" ; product "tRNA Threonine" ; note "tRNA Thr anticodon AGT, Cove score 76.75" ;
chromosome1 GeneDB 5'-UTR 2845983 2846534 . + . mRNA SPAC3F10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3F10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2846535 2848373 . + . mRNA SPAC3F10.13 ; systematic_id "SPAC3F10.13" ; colour "2" ; gene "ucp6 ||| SPAC3F10.13" ; Alias "ucp6" ; db_xref "SPD:36/36G08" ; GO "GO:0043130; ubiquitin binding
GO:0031593; polyubiquitin binding
GO:0016579; protein deubiquitination
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR138c; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "ucp6" ; product "UBA domain protein Ucp6" ;
chromosome1 GeneDB CDS 2846535 2848373 . + . mRNA SPAC3F10.13 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2848374 2848571 . + . mRNA SPAC3F10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3F10.13" ; systematic_id "SPAC3F10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2848570 2848928 . - . mRNA SPAC3F10.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3F10.15c" ; systematic_id "SPAC3F10.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2848679 2849059 . + . misc_feature unknown_2434 ; note "obsolete SPAC3F10.14; removed as spurious when similarity detected between SPAC3F10.15c (the smaller ORF on teh opposite strand) and S. cerevisiae SPO12" ;
chromosome1 GeneDB CDS_parts 2848929 2849201 . - . mRNA SPAC3F10.15c ; systematic_id "SPAC3F10.15c" ; colour "2" ; gene "spo12 ||| SPAC3F10.15c" ; Alias "spo12" ; db_xref "SPD:01/01C02" ; GO "GO:0007346; regulation of progression through mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11085271; date=19700101 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YHR152W and YGR230W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "spo12" ; product "Spo12 family protein" ;
chromosome1 GeneDB CDS 2848929 2849201 . - . mRNA SPAC3F10.15c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2849200 2849231 . - . mRNA SPAC3F10.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3F10.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2849634 2849709 . - . mRNA SPAC3F10.16c ; ID "SPAC3F10.16c" ; db_xref "SPD:27/27B01" ; systematic_id "SPAC3F10.16c" ; gene "SPAC3F10.16c" ; note "mRNA from spc04442" ;
chromosome1 GeneDB CDS_parts 2849710 2851669 . - . mRNA SPAC3F10.16c ; db_xref "SPD:27/27B01" ; systematic_id "SPAC3F10.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL099W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005525; GTP binding
GO:0042254; ribosome biogenesis and assembly
GO:0000054; ribosome export from nucleus" ; gene "SPAC3F10.16c" ; product "GTP binding protein, HSR1-related (predicted)" ;
chromosome1 GeneDB CDS 2849710 2851557 . - . mRNA SPAC3F10.16c ; colour "7" ;
chromosome1 GeneDB CDS 2851667 2851669 . - . mRNA SPAC3F10.16c ; colour "7" ;
chromosome1 GeneDB misc_feature 2851558 2851574 . - . misc_feature unknown_2435 ; colour "2" ; note "splice branch and acceptor sequence, ctaattgtcattgag tag" ;
chromosome1 GeneDB misc_feature 2851661 2851666 . - . misc_feature unknown_2436 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB 5'-UTR 2851668 2851761 . - . mRNA SPAC3F10.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3F10.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2851929 2852035 . + . mRNA SPAC3F10.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3F10.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2852036 2853332 . + . mRNA SPAC3F10.17 ; db_xref "SPD:22/22E07" ; systematic_id "SPAC3F10.17" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030688; nucleolar preribosome, small subunit precursor
GO:0042254; ribosome biogenesis and assembly
GO:0000056; ribosomal small subunit export from nucleus" ; gene "SPAC3F10.17" ; product "ribosome biogenesis protein Ltv1 (predicted)" ;
chromosome1 GeneDB CDS 2852036 2852038 . + . mRNA SPAC3F10.17 ; colour "7" ;
chromosome1 GeneDB CDS 2852175 2853332 . + . mRNA SPAC3F10.17 ; colour "7" ;
chromosome1 GeneDB misc_feature 2852039 2852044 . + . misc_feature unknown_2437 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB misc_feature 2852156 2852174 . + . misc_feature unknown_2438 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgaaaatatga atag" ;
chromosome1 GeneDB 3'-UTR 2853333 2853575 . + . mRNA SPAC3F10.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3F10.17" ; systematic_id "SPAC3F10.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2853442 2854163 . + . misc_feature unknown_2439 ; note "nominal over lap with cosmid SPAC8F11, EM:AL109738 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 2853647 2853789 . - . mRNA SPAC3F10.18c ; Alias "rpl4102" ; ID "SPAC3F10.18c" ; db_xref "SPD:31/31C01" ; systematic_id "SPAC3F10.18c" ; primary_name "rpl4102" ; gene "rpl4102 ||| rpl41-2 ||| rpl41 ||| SPAC8F11.01c ||| SPAC3F10.18c" ; note "mRNA from AU007741" ;
chromosome1 GeneDB CDS_parts 2853790 2853919 . - . mRNA SPAC3F10.18c ; systematic_id "SPAC3F10.18c" ; colour "7" ; gene "rpl4102 ||| rpl41-2 ||| rpl41 ||| SPAC8F11.01c ||| SPAC3F10.18c" ; Alias "rpl4102" ; db_xref "SPD:31/31C01" ; synonym "rpl41-2 ||| rpl41 ||| SPAC8F11.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL184C and YDL133C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl4102" ; product "60S ribosomal protein L41 (predicted)" ;
chromosome1 GeneDB CDS 2853790 2853796 . - . mRNA SPAC3F10.18c ; colour "7" ;
chromosome1 GeneDB CDS 2853849 2853919 . - . mRNA SPAC3F10.18c ; colour "7" ;
chromosome1 GeneDB misc_feature 2853797 2853811 . - . misc_feature unknown_2440 ; colour "6" ; note "ctaactgagaaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2853797 2853848 . - . intron SPAC3F10.18c ; Alias "rpl4102" ; db_xref "SPD:31/31C01" ; systematic_id "SPAC3F10.18c" ; primary_name "rpl4102" ; gene "rpl4102 ||| rpl41-2 ||| rpl41 ||| SPAC8F11.01c ||| SPAC3F10.18c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2853843 2853848 . - . misc_feature unknown_2441 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB LTR 2854057 2854405 . + . LTR unknown_2442 ; note "Tf2-type LTR ||| TF2 LTR" ;
chromosome1 GeneDB 3'-UTR 2854896 2855321 . - . mRNA SPAC8F11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8F11.02c" ; systematic_id "SPAC8F11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2855322 2855662 . - . mRNA SPAC8F11.02c ; systematic_id "SPAC8F11.02c" ; colour "7" ; gene "SPAC8F11.02c" ; Alias "dph3" ; db_xref "SPD:02/02A07" ; GO "GO:0017183; peptidyl-diphthamide biosynthesis from peptidyl-histidine
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0002098; tRNA wobble uridine modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CSL; date=19700101 ||| term=orthologous to S. cerevisiae YBL071W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human DPH3 ortholog; date=20100120" ; primary_name "dph3" ; product "diphthamide biosynthesis protein Dph3 (predicted)" ;
chromosome1 GeneDB CDS 2855322 2855456 . - . mRNA SPAC8F11.02c ; colour "7" ;
chromosome1 GeneDB CDS 2855516 2855577 . - . mRNA SPAC8F11.02c ; colour "7" ;
chromosome1 GeneDB CDS 2855620 2855662 . - . mRNA SPAC8F11.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 2855457 2855472 . - . misc_feature unknown_2443 ; colour "6" ; note "ctaattcattatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2855510 2855515 . - . misc_feature unknown_2444 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2855578 2855588 . - . misc_feature unknown_2445 ; colour "6" ; note "ctaattaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2855614 2855619 . - . misc_feature unknown_2446 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2855661 2855669 . - . mRNA SPAC8F11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8F11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2855720 2855930 . + . mRNA SPAC8F11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8F11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2855931 2858980 . + . mRNA SPAC8F11.03 ; systematic_id "SPAC8F11.03" ; colour "2" ; gene "msh3 ||| swi4 ||| SPAC8F11.03" ; Alias "msh3" ; db_xref "SPD:47/47G08" ; synonym "swi4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060926 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YCR092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006298; mismatch repair
GO:0007534; gene conversion at mating-type locus
GO:0000228; nuclear chromosome
GO:0007131; meiotic recombination
GO:0005524; ATP binding
GO:0000403; Y-form DNA binding
GO:0000406; double-strand/single-strand DNA junction binding
GO:0000404; loop DNA binding
GO:0032135; DNA insertion or deletion binding
GO:0043570; maintenance of DNA repeat elements" ; primary_name "msh3" ; product "MutS protein homolog 3" ;
chromosome1 GeneDB CDS 2855931 2857427 . + . mRNA SPAC8F11.03 ; colour "2" ;
chromosome1 GeneDB CDS 2857463 2858980 . + . mRNA SPAC8F11.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 2857428 2857433 . + . misc_feature unknown_2447 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 2858981 2859022 . + . mRNA SPAC8F11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8F11.03" ; systematic_id "SPAC8F11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2859456 2860704 . + . mRNA SPAC8F11.04 ; db_xref "SPD:19/19H12" ; systematic_id "SPAC8F11.04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR052W and YKR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005730; nucleolus
GO:0005634; nucleus" ; gene "SPAC8F11.04" ; product "U3 snoRNP-associated protein Cic1/Utp30 family (predicted)" ;
chromosome1 GeneDB CDS 2859456 2859491 . + . mRNA SPAC8F11.04 ; colour "7" ;
chromosome1 GeneDB CDS 2859619 2860704 . + . mRNA SPAC8F11.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 2859492 2859497 . + . misc_feature unknown_2448 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2859604 2859618 . + . misc_feature unknown_2449 ; colour "6" ; note "ctaactgttgttcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2860705 2860783 . + . mRNA SPAC8F11.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8F11.04" ; systematic_id "SPAC8F11.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2860952 2861740 . - . mRNA SPAC8F11.05c ; systematic_id "SPAC8F11.05c" ; colour "8" ; gene "SPAC8F11.05c ||| mug130" ; db_xref "SPD:09/09H05" ; Alias "mug130" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug130" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2860952 2861354 . - . mRNA SPAC8F11.05c ; colour "8" ;
chromosome1 GeneDB CDS 2861418 2861740 . - . mRNA SPAC8F11.05c ; colour "8" ;
chromosome1 GeneDB misc_feature 2861355 2861373 . - . misc_feature unknown_2450 ; colour "6" ; note "ctaatccttcatacaaaagcggatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2861412 2861417 . - . misc_feature unknown_2451 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2862580 2862673 . + . mRNA SPAC8F11.06 ; ID "SPAC8F11.06" ; systematic_id "SPAC8F11.06" ; gene "SPAC8F11.06 ||| brr6 ||| brl1" ; note "mRNA from AU013439" ;
chromosome1 GeneDB CDS_parts 2862674 2863567 . + . mRNA SPAC8F11.06 ; systematic_id "SPAC8F11.06" ; colour "2" ; gene "SPAC8F11.06 ||| brr6 ||| brl1" ; Alias "brr6" ; db_xref "SPD:12/12B09" ; synonym "brl1" ; GO "GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane
; nuclear membrane
GO:0006611; protein export from nucleus
; nuclear membrane organization and biogenesis
GO:0006406; mRNA export from nucleus
GO:0007346; regulation of mitotic cell cycle
GO:0051292; nuclear pore complex assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17993570; date=20081211 ||| term=phenotype, mononucleate; db_xref=PMID:17993570; qualifier=deletion; cv=phenotype; date=20081211 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:17993570; qualifier=deletion; cv=phenotype; date=20081211 ||| term=orthologous to S. cerevisiae YHR036W and YGL247W; db_xref=PMID:15882446; date=19700101 ||| term=complementation, functionally complemented by P. carnii Brl1; db_xref=PMID:17993570; cv=complementation; date=20081211 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "brr6" ; product "nuclear envelope protein Brr6/Brl1" ;
chromosome1 GeneDB CDS 2862674 2863567 . + . mRNA SPAC8F11.06 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2863705 2863964 . - . mRNA SPAC8F11.07c ; Alias "cdc24" ; ID "SPAC8F11.07c" ; db_xref "SPD:33/33E03 ||| EMBL:AB015436" ; systematic_id "SPAC8F11.07c" ; primary_name "cdc24" ; gene "cdc24 ||| SPAC8F11.07c" ;
chromosome1 GeneDB CDS_parts 2863965 2865787 . - . mRNA SPAC8F11.07c ; systematic_id "SPAC8F11.07c" ; colour "2" ; gene "cdc24 ||| SPAC8F11.07c" ; Alias "cdc24" ; db_xref "SPD:33/33E03" ; GO "GO:0043137; DNA replication, removal of RNA primer
GO:0005634; nucleus
GO:0005515; protein binding
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0007090; regulation of S-phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9649516; date=19700101 ||| term=misc, disruption of interaction between Cdc27 and Pcn1 makes Cdc24-Dna2 complex dispensible; db_xref=PMID:15576681; date=20070725 ||| term=species distribution, no apparent orthologs; date=20070725 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:6943408; qualifier=ts; date=20100705" ; primary_name "cdc24" ; product "DNA replication protein Cdc24" ;
chromosome1 GeneDB CDS 2863965 2864266 . - . mRNA SPAC8F11.07c ; colour "2" ;
chromosome1 GeneDB CDS 2864308 2864442 . - . mRNA SPAC8F11.07c ; colour "2" ;
chromosome1 GeneDB CDS 2864488 2865151 . - . mRNA SPAC8F11.07c ; colour "2" ;
chromosome1 GeneDB CDS 2865210 2865409 . - . mRNA SPAC8F11.07c ; colour "2" ;
chromosome1 GeneDB CDS 2865474 2865501 . - . mRNA SPAC8F11.07c ; colour "2" ;
chromosome1 GeneDB CDS 2865556 2865640 . - . mRNA SPAC8F11.07c ; colour "2" ;
chromosome1 GeneDB CDS 2865696 2865787 . - . mRNA SPAC8F11.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 2864267 2864281 . - . misc_feature unknown_2452 ; colour "6" ; note "ctaattgaatgatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2864267 2864307 . - . intron SPAC8F11.07c ; Alias "cdc24" ; db_xref "SPD:33/33E03" ; systematic_id "SPAC8F11.07c" ; primary_name "cdc24" ; gene "cdc24 ||| SPAC8F11.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2864302 2864307 . - . misc_feature unknown_2453 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2864443 2864456 . - . misc_feature unknown_2454 ; colour "6" ; note "ttgatttattttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2864443 2864487 . - . intron SPAC8F11.07c ; Alias "cdc24" ; db_xref "SPD:33/33E03" ; systematic_id "SPAC8F11.07c" ; primary_name "cdc24" ; gene "cdc24 ||| SPAC8F11.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2864482 2864487 . - . misc_feature unknown_2455 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 2865152 2865209 . - . intron SPAC8F11.07c ; Alias "cdc24" ; db_xref "SPD:33/33E03" ; systematic_id "SPAC8F11.07c" ; primary_name "cdc24" ; gene "cdc24 ||| SPAC8F11.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2865204 2865209 . - . misc_feature unknown_2456 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2865410 2865432 . - . misc_feature unknown_2457 ; colour "6" ; note "ttgacctccttttttgtaaacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2865410 2865473 . - . intron SPAC8F11.07c ; Alias "cdc24" ; db_xref "SPD:33/33E03" ; systematic_id "SPAC8F11.07c" ; primary_name "cdc24" ; gene "cdc24 ||| SPAC8F11.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2865468 2865473 . - . misc_feature unknown_2458 ; colour "6" ; note "gtaacg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2865502 2865520 . - . misc_feature unknown_2459 ; colour "6" ; note "ctgacatgcatgaacgtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2865502 2865555 . - . intron SPAC8F11.07c ; Alias "cdc24" ; db_xref "SPD:33/33E03" ; systematic_id "SPAC8F11.07c" ; primary_name "cdc24" ; gene "cdc24 ||| SPAC8F11.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2865550 2865555 . - . misc_feature unknown_2460 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2865641 2865652 . - . misc_feature unknown_2461 ; colour "6" ; note "ctgacaatttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2865641 2865695 . - . intron SPAC8F11.07c ; Alias "cdc24" ; db_xref "SPD:33/33E03" ; systematic_id "SPAC8F11.07c" ; primary_name "cdc24" ; gene "cdc24 ||| SPAC8F11.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2865690 2865695 . - . misc_feature unknown_2462 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2865788 2865826 . - . mRNA SPAC8F11.07c ; Alias "cdc24" ; ID "SPAC8F11.07c" ; db_xref "EMBL:AB015436" ; systematic_id "SPAC8F11.07c" ; primary_name "cdc24" ; gene "cdc24 ||| SPAC8F11.07c" ;
chromosome1 GeneDB 3'-UTR 2866063 2866178 . - . mRNA SPAC8F11.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8F11.08c" ; systematic_id "SPAC8F11.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2866179 2867362 . - . mRNA SPAC8F11.08c ; db_xref "SPD:43/43H12" ; systematic_id "SPAC8F11.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0007126; meiosis
GO:0007126; meiosis
GO:0031233; intrinsic to external side of plasma membrane" ; gene "SPAC8F11.08c" ; product "esterase/lipase (predicted)" ;
chromosome1 GeneDB CDS 2866179 2866235 . - . mRNA SPAC8F11.08c ; colour "7" ;
chromosome1 GeneDB CDS 2866289 2867362 . - . mRNA SPAC8F11.08c ; colour "7" ;
chromosome1 GeneDB misc_feature 2866236 2866247 . - . misc_feature unknown_2463 ; colour "6" ; note "ctaacccgccag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2866283 2866288 . - . misc_feature unknown_2464 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2867361 2867656 . - . mRNA SPAC8F11.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8F11.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2868261 2868516 . - . mRNA SPAC8F11.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8F11.09c" ; systematic_id "SPAC8F11.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2868517 2869377 . - . mRNA SPAC8F11.09c ; systematic_id "SPAC8F11.09c" ; colour "7" ; gene "nnt1 ||| SPAC8F11.09c" ; Alias "nnt1" ; db_xref "SPD:11/11E04" ; GO "GO:0000183; chromatin silencing at rDNA
GO:0008112; nicotinamide N-methyltransferase activity
GO:0006769; nicotinamide metabolism
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR285W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "nnt1" ; product "nicotinamide N-methyltransferase Nnt1 (predicted)" ;
chromosome1 GeneDB CDS 2868517 2869171 . - . mRNA SPAC8F11.09c ; colour "7" ;
chromosome1 GeneDB CDS 2869265 2869377 . - . mRNA SPAC8F11.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 2869172 2869193 . - . misc_feature unknown_2465 ; colour "6" ; note "ttaacatcgttatgtataatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2869259 2869264 . - . misc_feature unknown_2466 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2869376 2869418 . - . mRNA SPAC8F11.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8F11.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2869691 2870119 . - . mRNA SPAC8F11.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8F11.10c" ; systematic_id "SPAC8F11.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2870120 2871325 . - . mRNA SPAC8F11.10c ; systematic_id "SPAC8F11.10c" ; colour "2" ; gene "pvg1 ||| SPAC8F11.10c ||| SPACUNK4.18" ; Alias "pvg1" ; db_xref "SPD:22/22B02" ; synonym "SPACUNK4.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Bacteria; date=19700101 ||| term=warning, possible horizontal transfer; date=20100820" ; GO "GO:0051072; 4,6-pyruvylated galactose residue biosynthesis
cell wall biosynthesis (sensu Fungi); GO:0009272; GO:0009272
GO:0046919; pyruvyltransferase activity
GO:0009898; internal side of plasma membrane" ; primary_name "pvg1" ; product "pyruvyltransferase Pvg1" ;
chromosome1 GeneDB CDS 2870120 2871325 . - . mRNA SPAC8F11.10c ; colour "2" ;
chromosome1 GeneDB misc_feature 2870900 2872640 . - . misc_feature unknown_2467 ; note "nominal overlap with SPUNK4, EM:AL031180 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 2870900 2872640 . + . misc_feature unknown_2468 ; note "nominal overlap with cosmid SPAC8F11, EM:AL109738 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 2871324 2871451 . - . mRNA SPAC8F11.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8F11.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2872827 2873031 . - . mRNA SPACUNK4.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPACUNK4.17" ; systematic_id "SPACUNK4.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2873032 2874249 . - . mRNA SPACUNK4.17 ; db_xref "SPD:19/19D03" ; systematic_id "SPACUNK4.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPACUNK4.17" ; product "NAD binding dehydrogenase family protein" ;
chromosome1 GeneDB CDS 2873032 2874249 . - . mRNA SPACUNK4.17 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2874248 2874532 . - . mRNA SPACUNK4.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPACUNK4.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2875888 2876217 . + . mRNA SPACUNK4.19 ; systematic_id "SPACUNK4.19" ; colour "8" ; gene "SPACUNK4.19 ||| mug153" ; db_xref "SPD:51/51G07" ; Alias "mug153" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug153" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2875888 2876217 . + . mRNA SPACUNK4.19 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 2877445 2877518 . + . mRNA SPACUNK4.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPACUNK4.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2877519 2880353 . + . mRNA SPACUNK4.16c ; db_xref "SPD:29/29E10" ; systematic_id "SPACUNK4.16c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR261C and YML100W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0003825; alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0005992; trehalose biosynthesis
GO:0005946; alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)" ; gene "SPACUNK4.16c" ; product "alpha,alpha-trehalose-phosphate synthase (predicted)" ;
chromosome1 GeneDB CDS 2877519 2880353 . + . mRNA SPACUNK4.16c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2880354 2880527 . + . mRNA SPACUNK4.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPACUNK4.16c" ; systematic_id "SPACUNK4.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2880963 2881104 . - . mRNA SPACUNK4.15 ; ID "SPACUNK4.15" ; db_xref "SPD:07/07B06" ; systematic_id "SPACUNK4.15" ; gene "SPACUNK4.15" ; note "mRNA from AU010774" ;
chromosome1 GeneDB CDS_parts 2881105 2881731 . - . mRNA SPACUNK4.15 ; db_xref "SPD:07/07B06" ; systematic_id "SPACUNK4.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR247W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0004113; 2',3'-cyclic-nucleotide 3'- phosphodiesterase activity
GO:0009187; cyclic nucleotide metabolic process
GO:0030136; clathrin-coated vesicle" ; gene "SPACUNK4.15" ; product "2',3'-cyclic-nucleotide 3'-phosphodiesterase (predicted)" ;
chromosome1 GeneDB CDS 2881105 2881731 . - . mRNA SPACUNK4.15 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2881730 2882176 . - . mRNA SPACUNK4.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPACUNK4.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2883113 2883183 . - . mRNA SPACUNK4.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPACUNK4.14" ; systematic_id "SPACUNK4.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2883184 2885220 . - . mRNA SPACUNK4.14 ; systematic_id "SPACUNK4.14" ; colour "10" ; gene "SPACUNK4.14 ||| mdb1" ; db_xref "SPD:35/35A01" ; Alias "mdb1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "mdb1" ; product "BRCT domain protein" ; reserved_name "mdb1" ;
chromosome1 GeneDB CDS 2883184 2883489 . - . mRNA SPACUNK4.14 ; colour "10" ;
chromosome1 GeneDB CDS 2883542 2884783 . - . mRNA SPACUNK4.14 ; colour "10" ;
chromosome1 GeneDB CDS 2884840 2884932 . - . mRNA SPACUNK4.14 ; colour "10" ;
chromosome1 GeneDB CDS 2884987 2885220 . - . mRNA SPACUNK4.14 ; colour "10" ;
chromosome1 GeneDB misc_feature 2883490 2883510 . - . misc_feature unknown_2469 ; colour "6" ; note "ctaatgatttaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2883536 2883541 . - . misc_feature unknown_2470 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2884784 2884800 . - . misc_feature unknown_2471 ; colour "6" ; note "ctaacctattttccaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2884834 2884839 . - . misc_feature unknown_2472 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2885221 2885311 . - . mRNA SPACUNK4.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPACUNK4.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact ||| refined to match gene structure in PMID:21270388" ;
chromosome1 GeneDB 5'-UTR 2885255 2885341 . + . mRNA SPACUNK4.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPACUNK4.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2885342 2886721 . + . mRNA SPACUNK4.13c ; db_xref "SPD:21/21D04" ; systematic_id "SPACUNK4.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=orthologous to S. cerevisiae YBR025C and YHL014c; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005737; cytoplasm
GO:0005525; GTP binding
GO:0007264; small GTPase mediated signal transduction" ; gene "SPACUNK4.13c" ; product "GTPase Ylf2 (predicted)" ;
chromosome1 GeneDB CDS 2885342 2885526 . + . mRNA SPACUNK4.13c ; colour "7" ;
chromosome1 GeneDB CDS 2885592 2885632 . + . mRNA SPACUNK4.13c ; colour "7" ;
chromosome1 GeneDB CDS 2885724 2886721 . + . mRNA SPACUNK4.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 2885527 2885532 . + . misc_feature unknown_2473 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2885576 2885591 . + . misc_feature unknown_2474 ; colour "6" ; note "ttaacaataaatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2885633 2885638 . + . misc_feature unknown_2475 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_RNA 2885670 2886792 . - . misc_RNA SPNCRNA.56 ; Alias "prl56" ; db_xref "EMBL:AB084868 ||| PMID:12597277" ; systematic_id "SPNCRNA.56" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl56" ; gene "prl56 ||| SPNCRNA.56" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB misc_feature 2885703 2885723 . + . misc_feature unknown_2476 ; colour "6" ; note "ctaacaaaacaaatttataag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 2886960 2887038 . + . mRNA SPACUNK4.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPACUNK4.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2887039 2889948 . + . mRNA SPACUNK4.12c ; systematic_id "SPACUNK4.12c" ; colour "7" ; gene "SPACUNK4.12c ||| mug138" ; Alias "mug138" ; db_xref "SPD:47/47D09" ; GO "GO:0071432; peptide mating pheromone maturation involved in conjugation with cellular fusion
GO:0006508; proteolysis
GO:0008237; metallopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR389C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug138" ; product "metallopeptidase (predicted)" ;
chromosome1 GeneDB CDS 2887039 2889948 . + . mRNA SPACUNK4.12c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2889949 2890095 . + . mRNA SPACUNK4.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPACUNK4.12c" ; systematic_id "SPACUNK4.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2890158 2890779 . + . mRNA SPACUNK4.11c ; db_xref "SPD:07/07A07" ; systematic_id "SPACUNK4.11c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Eukaryotes; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20091106 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106" ; colour "10" ; gene "SPACUNK4.11c" ; product "M-phase phosphoprotein 6 family protein" ;
chromosome1 GeneDB CDS 2890158 2890184 . + . mRNA SPACUNK4.11c ; colour "10" ;
chromosome1 GeneDB CDS 2890240 2890779 . + . mRNA SPACUNK4.11c ; colour "10" ;
chromosome1 GeneDB misc_feature 2890185 2890190 . + . misc_feature unknown_2477 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2890222 2890239 . + . misc_feature unknown_2478 ; colour "6" ; note "ctaacctgtattttgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2890780 2890887 . + . mRNA SPACUNK4.11c ; ID "SPACUNK4.11c" ; db_xref "SPD:07/07A07" ; systematic_id "SPACUNK4.11c" ; gene "SPACUNK4.11c" ; note "mRNA from AU010352" ;
chromosome1 GeneDB 3'-UTR 2891049 2891215 . - . mRNA SPACUNK4.10 ; ID "SPACUNK4.10" ; db_xref "SPD:22/22H01" ; systematic_id "SPACUNK4.10" ; gene "SPACUNK4.10" ; note "mRNA from AU013135" ;
chromosome1 GeneDB CDS_parts 2891216 2892527 . - . mRNA SPACUNK4.10 ; db_xref "SPD:22/22H01" ; systematic_id "SPACUNK4.10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL274C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0009436; glyoxylate catabolic process
GO:0047964; glyoxylate reductase activity
GO:0006111; regulation of gluconeogenesis" ; gene "SPACUNK4.10" ; product "glyoxylate reductase (predicted)" ;
chromosome1 GeneDB CDS 2891216 2891258 . - . mRNA SPACUNK4.10 ; colour "7" ;
chromosome1 GeneDB CDS 2891310 2892175 . - . mRNA SPACUNK4.10 ; colour "7" ;
chromosome1 GeneDB CDS 2892432 2892527 . - . mRNA SPACUNK4.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 2891259 2891274 . - . misc_feature unknown_2479 ; colour "6" ; note "ctaactttttttctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2891259 2891309 . - . intron SPACUNK4.10 ; db_xref "SPD:22/22H01" ; systematic_id "SPACUNK4.10" ; gene "SPACUNK4.10" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2891304 2891309 . - . misc_feature unknown_2480 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2892176 2892190 . - . misc_feature unknown_2481 ; colour "6" ; note "ctaatgtcgttttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 2892176 2892431 . - . intron SPACUNK4.10 ; db_xref "SPD:22/22H01" ; systematic_id "SPACUNK4.10" ; gene "SPACUNK4.10" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2892426 2892431 . - . misc_feature unknown_2482 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2892528 2892803 . - . mRNA SPACUNK4.10 ; ID "SPACUNK4.10" ; systematic_id "SPACUNK4.10" ; gene "SPACUNK4.10" ; note "mRNA from SPD185" ;
chromosome1 GeneDB 3'-UTR 2893836 2893971 . - . mRNA SPACUNK4.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPACUNK4.09" ; systematic_id "SPACUNK4.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2893868 2895019 . + . misc_RNA SPNCRNA.559 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.559" ; synonym "SPNG2AF9" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB CDS_parts 2893972 2894991 . - . mRNA SPACUNK4.09 ; db_xref "SPD:15/15B12" ; systematic_id "SPACUNK4.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100827" ; colour "10" ; gene "SPACUNK4.09" ; product "conserved protein" ;
chromosome1 GeneDB CDS 2893972 2894991 . - . mRNA SPACUNK4.09 ; colour "10" ;
chromosome1 GeneDB CDS_parts 2895219 2897600 . - . mRNA SPACUNK4.08 ; db_xref "SPD:38/38D03" ; systematic_id "SPACUNK4.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YHR028C and YOR219C; date=19700101 ||| term=human DPP4 ortholog; date=20100827 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, conserved in Vertebrates; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0008239; dipeptidyl-peptidase activity
GO:0016485; protein processing" ; gene "SPACUNK4.08" ; product "dipeptidyl peptidase (predicted)" ; EC_number "3.4.14.-" ;
chromosome1 GeneDB CDS 2895219 2897600 . - . mRNA SPACUNK4.08 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2897599 2897905 . - . mRNA SPACUNK4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPACUNK4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2898018 2898058 . + . mRNA SPACUNK4.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPACUNK4.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2898059 2901694 . + . mRNA SPACUNK4.07c ; systematic_id "SPACUNK4.07c" ; colour "2" ; gene "cta4 ||| sev4 ||| SPACUNK4.07c ||| SPAPYUK71.01" ; Alias "cta4" ; db_xref "SPD:48/48E05" ; obsolete_name "SPAC2E11.07c" ; synonym "sev4 ||| SPAPYUK71.01" ; GO "GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0005388; calcium-transporting ATPase activity
GO:0006874; calcium ion homeostasis
GO:0070588; calcium ion transmembrane transport" ; controlled_curation "term=phenotype, microtubule cytoskeleton defects; db_xref=PMID:12058018; date=20101101 ||| term=phenotype, cell polarity defects; db_xref=PMID:12058018; date=20101101 ||| term=phenotype, cytokinesis defects; db_xref=PMID:12058018; date=20101101 ||| term=phenotype, sensitive to calcium; cv=phenotype; qualifier=deletion; db_xref=PMID:16394583; date=20090429 ||| term=phenotype, sporulation defects; cv=phenotype; allele=sev4-L5; db_xref=PMID:16394583; date=20090429 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YEL031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16394583; date=20090429 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cta4" ; product "P-type ATPase, calcium transporting Cta4" ;
chromosome1 GeneDB CDS 2898059 2901694 . + . mRNA SPACUNK4.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 2901321 2902711 . + . misc_feature unknown_2483 ; note "nominal overlap between small insert clone SPAPYUK71 and SPUNK4" ;
chromosome1 GeneDB 3'-UTR 2901695 2901865 . + . mRNA SPACUNK4.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPACUNK4.07c" ; systematic_id "SPACUNK4.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2902104 2902287 . + . mRNA SPACUNK4.06c ; Alias "rpb7" ; ID "SPACUNK4.06c" ; systematic_id "SPACUNK4.06c" ; primary_name "rpb7" ; gene "rpb7 ||| SPACUNK4.06c ||| SPAPYUK71.02" ; note "mRNA from AF027821" ;
chromosome1 GeneDB CDS_parts 2902288 2902873 . + . mRNA SPACUNK4.06c ; systematic_id "SPACUNK4.06c" ; colour "2" ; gene "rpb7 ||| SPACUNK4.06c ||| SPAPYUK71.02" ; Alias "rpb7" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:06/06D02" ; synonym "SPAPYUK71.02" ; GO "GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003723; RNA binding
GO:0031123; RNA 3' end processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR404C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpb7" ; product "DNA-directed RNA polymerase complex II subunit Rpb7" ;
chromosome1 GeneDB CDS 2902288 2902761 . + . mRNA SPACUNK4.06c ; colour "2" ;
chromosome1 GeneDB CDS 2902829 2902873 . + . mRNA SPACUNK4.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 2902762 2902767 . + . misc_feature unknown_2484 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 2902762 2902828 . + . intron SPACUNK4.06c ; Alias "rpb7" ; db_xref "SPD:06/06D02" ; systematic_id "SPACUNK4.06c" ; primary_name "rpb7" ; gene "rpb7 ||| SPACUNK4.06c ||| SPAPYUK71.02" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 2902813 2902828 . + . misc_feature unknown_2485 ; colour "6" ; note "ctaacataatatctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2902874 2903133 . + . mRNA SPACUNK4.06c ; Alias "rpb7" ; ID "SPACUNK4.06c" ; db_xref "SPD:06/06D02" ; systematic_id "SPACUNK4.06c" ; primary_name "rpb7" ; gene "rpb7 ||| SPACUNK4.06c ||| SPAPYUK71.02" ; note "mRNA from AF027821" ;
chromosome1 GeneDB CDS_parts 2903369 2907046 . - . mRNA SPAPYUK71.03c ; Alias "syn1" ; systematic_id "SPAPYUK71.03c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YML072C and YNL087W and YOR086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0008289; lipid binding
GO:0006906; vesicle fusion
GO:0031410; cytoplasmic vesicle
GO:0051286; cell tip
GO:0005794; Golgi apparatus
GO:0030659; cytoplasmic vesicle membrane
GO:0005509; calcium ion binding
GO:0005543; phospholipid binding" ; gene "SPAPYUK71.03c" ; primary_name "syn1" ; product "synaptotagmin family C2 domain protein, Syn1" ;
chromosome1 GeneDB CDS 2903369 2907046 . - . mRNA SPAPYUK71.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2907045 2907202 . - . mRNA SPAPYUK71.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPYUK71.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2907643 2907700 . - . mRNA SPAC513.01c ; ID "SPAC513.01c" ; db_xref "SPD:29/29C05" ; systematic_id "SPAC513.01c" ; note "mRNA from AU007400" ;
chromosome1 GeneDB CDS_parts 2907701 2910229 . - . mRNA SPAC513.01c ; systematic_id "SPAC513.01c" ; colour "2" ; db_xref "SPD:29/29C05" ; Alias "eft201" ; synonym "eft2-1 ||| etf2 ||| SPAPYUK71.04c" ; GO "GO:0003746; translation elongation factor activity
GO:0005525; GTP binding
GO:0006414; translational elongation
; ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR133W and YDR385W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "eft201" ; product "translation elongation factor 2 (EF-2) Eft2,A" ;
chromosome1 GeneDB CDS 2907701 2910229 . - . mRNA SPAC513.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 2910040 2910141 . + . misc_feature unknown_2486 ; note "nominal overlap with cosmid SPAC513 and small insert clone SPAPYUK71" ;
chromosome1 GeneDB misc_RNA 2910333 2910975 . + . misc_RNA SPNCRNA.209 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.209" ; synonym "SPNG543" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 2911657 2911718 . + . mRNA SPAC513.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC513.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2911719 2912369 . + . mRNA SPAC513.02 ; db_xref "SPD:07/07E04" ; systematic_id "SPAC513.02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC5H10.03; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; colour "10" ; gene "SPAC513.02" ; product "phosphoglycerate mutase family" ;
chromosome1 GeneDB CDS 2911719 2912369 . + . mRNA SPAC513.02 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 2912370 2912426 . + . mRNA SPAC513.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC513.02" ; systematic_id "SPAC513.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2913008 2913184 . - . mRNA SPAC513.03 ; systematic_id "SPAC513.03" ; colour "2" ; gene "mfm2 ||| SPAC513.03" ; Alias "mfm2" ; db_xref "SPD:01/01A07" ; GO "GO:0032005; signal transduction during conjugation with cellular fusion
GO:0000772; mating pheromone activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, M-factor precursor; cv=name_description; date=20090729" ; primary_name "mfm2" ; product "M-factor precursor Mfm2" ;
chromosome1 GeneDB CDS 2913008 2913020 . - . mRNA SPAC513.03 ; colour "2" ;
chromosome1 GeneDB CDS 2913063 2913184 . - . mRNA SPAC513.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 2913021 2913036 . - . misc_feature unknown_2487 ; colour "6" ; note "ctaattcaatatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2913057 2913062 . - . misc_feature unknown_2488 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 2913403 2913705 . + . mRNA SPAC513.04 ; db_xref "SPD:01/01D10" ; systematic_id "SPAC513.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC513.04" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2913403 2913705 . + . mRNA SPAC513.04 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 2914463 2914900 . + . mRNA SPAC513.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC513.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2914901 2918134 . + . mRNA SPAC513.05 ; systematic_id "SPAC513.05" ; colour "7" ; gene "ams1 ||| SPAC513.05" ; Alias "ams1" ; db_xref "SPD:30/30B12" ; GO "GO:0009313; oligosaccharide catabolism
GO:0000329; vacuolar membrane
GO:0004559; alpha-mannosidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL156W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "ams1" ; product "alpha-mannosidase (predicted)" ; reserved_name "ams1" ;
chromosome1 GeneDB CDS 2914901 2918134 . + . mRNA SPAC513.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2918135 2918147 . + . mRNA SPAC513.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC513.05" ; systematic_id "SPAC513.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2918202 2918361 . - . mRNA SPAC513.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC513.06c" ; systematic_id "SPAC513.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2918362 2919468 . - . mRNA SPAC513.06c ; db_xref "SPD:17/17D07" ; systematic_id "SPAC513.06c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC513.06c" ; product "dihydrodiol dehydrogenase (predicted)" ; EC_number "1.3.1.20" ;
chromosome1 GeneDB CDS 2918362 2919468 . - . mRNA SPAC513.06c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2919467 2919743 . - . mRNA SPAC513.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC513.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2921391 2921567 . + . mRNA SPAC513.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC513.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2921568 2922578 . + . mRNA SPAC513.07 ; db_xref "SPD:15/15A04" ; systematic_id "SPAC513.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL157W and YOL151W and YGL039W and YDR541C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; colour "10" ; gene "SPAC513.07" ; product "flavonol reductase/cinnamoyl-CoA reductase family" ;
chromosome1 GeneDB CDS 2921568 2922578 . + . mRNA SPAC513.07 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 2922579 2922765 . + . mRNA SPAC513.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC513.07" ; systematic_id "SPAC513.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2923140 2923243 . + . misc_feature unknown_2489 ; note "nominal overlap with cosmid SPAC513 and cosmid SPAC2E1P3" ;
chromosome1 GeneDB CDS_parts 2923322 2924368 . + . mRNA SPAC2E1P3.01 ; db_xref "SPD:15/15H09" ; systematic_id "SPAC2E1P3.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR102C and YLR460C and YNL134C; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0008106; alcohol dehydrogenase (NADP+) activity
GO:0008270; zinc ion binding
GO:0033554; cellular response to stress" ; gene "SPAC2E1P3.01" ; product "dehydrogenase (predicted)" ;
chromosome1 GeneDB CDS 2923322 2924368 . + . mRNA SPAC2E1P3.01 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 2924369 2924525 . + . mRNA SPAC2E1P3.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2E1P3.01" ; systematic_id "SPAC2E1P3.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2924893 2926446 . - . mRNA SPAC2E1P3.02c ; systematic_id "SPAC2E1P3.02c" ; colour "2" ; gene "amt3 ||| SPAC2E1P3.02c" ; Alias "amt3" ; db_xref "SPD:25/25B09" ; GO "GO:0005887; integral to plasma membrane
GO:0008519; ammonium transporter activity
GO:0072488; methylammonium transporter activity
GO:0072499; ammonium transmembrane transport
GO:0015843; methylammonium transmembrane transport
GO:0031670; cellular response to nutrient" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:16999738; date=20061024 ||| term=orthologous to S. cerevisiae YPR138C and YGR121C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "amt3" ; product "ammonium transporter Amt3" ;
chromosome1 GeneDB CDS 2924893 2926446 . - . mRNA SPAC2E1P3.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 2926800 2931725 . - . misc_feature Tf2-3 ; db_xref "SO:0000186" ; systematic_id "Tf2-3" ; note "LTR-retrotransposon" ;
chromosome1 GeneDB LTR 2926805 2927153 . - . LTR unknown_2490 ; note "Tf2-type LTR" ;
chromosome1 GeneDB CDS_parts 2927204 2931205 . - . mRNA SPAC2E1P3.03c ; Alias "Tf2-3" ; systematic_id "SPAC2E1P3.03c" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "SPAC2E1P3.03c ||| Tf2-3" ; primary_name "Tf2-3" ; product "retrotransposable element" ;
chromosome1 GeneDB CDS 2927204 2931205 . - . mRNA SPAC2E1P3.03c ; colour "4" ;
chromosome1 GeneDB LTR 2931372 2931720 . - . LTR unknown_2491 ; note "Tf2-type LTR" ;
chromosome1 GeneDB misc_RNA 2931805 2932279 . - . misc_RNA SPNCRNA.528 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.528" ; synonym "SPNGAF43" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB repeat_region 2932742 2932765 . + . repeat_region unknown_2492 ; note "(at)12" ;
chromosome1 GeneDB CDS_parts 2932797 2934935 . + . mRNA SPAC2E1P3.04 ; systematic_id "SPAC2E1P3.04" ; colour "2" ; gene "SPAC2E1P3.04" ; Alias "cao1" ; db_xref "SPD:37/37E06" ; synonym "spao1" ; GO "GO:0006878; cellular copper ion homeostasis
GO:0005829; cytosol
GO:0008131; amine oxidase activity
GO:0005507; copper ion binding
GO:0005515; protein binding
GO:0009310; amine catabolic process
GO:0034641; cellular ntirogen compound metabolic process
GO:0048038; quinone binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "cao1" ; product "copper amine oxidase Cao1" ; EC_number "1.4.3.-" ;
chromosome1 GeneDB CDS 2932797 2934935 . + . mRNA SPAC2E1P3.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2934936 2935087 . + . mRNA SPAC2E1P3.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2E1P3.04" ; systematic_id "SPAC2E1P3.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2935116 2935509 . - . mRNA SPAC2E1P3.05c ; ID "SPAC2E1P3.05c" ; db_xref "SPD:06/06E05" ; systematic_id "SPAC2E1P3.05c" ; gene "SPAC2E1P3.05c" ; note "mRNA from AU009920" ;
chromosome1 GeneDB CDS_parts 2935510 2936103 . - . mRNA SPAC2E1P3.05c ; db_xref "SPD:06/06E05" ; systematic_id "SPAC2E1P3.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; colour "10" ; GO "GO:0009986; cell surface
GO:0046379; extracellular polysaccharide metabolic process" ; gene "SPAC2E1P3.05c" ; product "fungal cellulose binding domain protein" ;
chromosome1 GeneDB CDS 2935510 2936103 . - . mRNA SPAC2E1P3.05c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2936102 2936240 . - . mRNA SPAC2E1P3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2E1P3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 2936285 2936436 . + . misc_feature unknown_2493 ; note "nominal overlap with SPAC2E1P3 S. pombe chromosome 1" ;
chromosome1 GeneDB LTR 2939937 2940229 . - . LTR unknown_2494 ; note "Tf1 type LTR" ;
chromosome1 GeneDB misc_feature 2939937 2942286 . - . misc_feature Tf-fragment1 ; db_xref "SO:0000186" ; systematic_id "Tf-fragment1" ; note "LTR-retrotransposon fragment" ;
chromosome1 GeneDB LTR 2941944 2942286 . - . LTR unknown_2495 ; note "Tf1 type LTR" ;
chromosome1 GeneDB CDS_parts 2942389 2946051 . + . mRNA SPAPB2C8.01 ; systematic_id "SPAPB2C8.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=GLEYA domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; colour "10" ; gene "SPAPB2C8.01" ; product "cell surface glycoprotein (predicted)" ; note "3kb of 36 AA repeat" ;
chromosome1 GeneDB CDS 2942389 2946051 . + . mRNA SPAPB2C8.01 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 2946052 2946085 . + . mRNA SPAPB2C8.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB2C8.01" ; systematic_id "SPAPB2C8.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2947519 2947943 . + . mRNA SPAPB24D3.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB24D3.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2947944 2949728 . + . mRNA SPAPB24D3.01 ; systematic_id "SPAPB24D3.01" ; colour "7" ; gene "SPAPB2C8.02 ||| SPAPB24D3.01" ; Alias "SPAPB2C8.02" ; synonym "SPAPB2C8.02" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPBC1773.16C and SPAC11D3.07c and SPBC1773.12; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "SPAPB2C8.02" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB CDS 2947944 2949728 . + . mRNA SPAPB24D3.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 2949549 2949654 . + . misc_feature unknown_2496 ; note "nominal overlap with pB24D3 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 2949729 2949992 . + . mRNA SPAPB24D3.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB24D3.01" ; systematic_id "SPAPB24D3.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2950048 2950089 . - . mRNA SPAPB24D3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB24D3.02c" ; systematic_id "SPAPB24D3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2950090 2951721 . - . mRNA SPAPB24D3.02c ; systematic_id "SPAPB24D3.02c" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; gene "SPAPB24D3.02c" ; product "amino acid permease, unknown 3 (predicted)" ;
chromosome1 GeneDB CDS 2950090 2951721 . - . mRNA SPAPB24D3.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2951720 2952135 . - . mRNA SPAPB24D3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB24D3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2952301 2952484 . + . mRNA SPAPB24D3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB24D3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2952485 2953642 . + . mRNA SPAPB24D3.03 ; systematic_id "SPAPB24D3.03" ; colour "7" ; GO "GO:0019627; urea metabolism
GO:0006527; arginine catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC11D3.09 and SPBC8E4.03; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAPB24D3.03" ; product "agmatinase (predicted)" ; EC_number "3.5.3.-" ;
chromosome1 GeneDB CDS 2952485 2953642 . + . mRNA SPAPB24D3.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2953643 2953675 . + . mRNA SPAPB24D3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB24D3.03" ; systematic_id "SPAPB24D3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2953728 2954137 . - . mRNA SPAPB24D3.04c ; Alias "mag1" ; ID "SPAPB24D3.04c" ; systematic_id "SPAPB24D3.04c" ; primary_name "mag1" ; gene "mag1 ||| SPAPB24D3.04c" ; note "mRNA from SPU76637" ;
chromosome1 GeneDB CDS_parts 2954138 2954824 . - . mRNA SPAPB24D3.04c ; Alias "mag1" ; systematic_id "SPAPB24D3.04c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER142C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0006284; base-excision repair
GO:0006284; base-excision repair
GO:0000725; recombinational repair
GO:0006307; DNA dealkylation
GO:0003905; alkylbase DNA N-glycosylase activity
GO:0005634; nucleus
GO:0006285; base-excision repair, AP site formation
GO:0003684; damaged DNA binding" ; gene "mag1 ||| SPAPB24D3.04c" ; primary_name "mag1" ; product "DNA-3-methyladenine glycosylase Mag1" ; EC_number "3.2.2.21" ;
chromosome1 GeneDB CDS 2954138 2954824 . - . mRNA SPAPB24D3.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2954825 2954932 . - . mRNA SPAPB24D3.04c ; Alias "mag1" ; ID "SPAPB24D3.04c" ; systematic_id "SPAPB24D3.04c" ; primary_name "mag1" ; gene "mag1 ||| SPAPB24D3.04c" ; note "mRNA from SPU76637" ;
chromosome1 GeneDB CDS_parts 2954983 2955350 . - . mRNA SPAPB24D3.05c ; pseudo "_no_value" ; systematic_id "SPAPB24D3.05c" ; controlled_curation "term=warning, possible horizontal transfer; date=20100919" ; colour "13" ; gene "SPAPB24D3.05c" ; product "ring cleavage dioxygenase, pseudogene, single frameshift and no methionine" ;
chromosome1 GeneDB CDS 2954983 2955191 . - . mRNA SPAPB24D3.05c ; colour "13" ;
chromosome1 GeneDB CDS 2955194 2955350 . - . mRNA SPAPB24D3.05c ; colour "13" ;
chromosome1 GeneDB 3'-UTR 2955766 2956063 . - . mRNA SPAPB24D3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB24D3.06c" ; systematic_id "SPAPB24D3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2956064 2957014 . - . mRNA SPAPB24D3.06c ; systematic_id "SPAPB24D3.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAPB24D3.06c" ; product "DUF1749 family protein" ;
chromosome1 GeneDB CDS 2956064 2957014 . - . mRNA SPAPB24D3.06c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2957013 2957087 . - . mRNA SPAPB24D3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB24D3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2957853 2958023 . - . mRNA SPAPB24D3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB24D3.07c" ; systematic_id "SPAPB24D3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2958024 2958926 . - . mRNA SPAPB24D3.07c ; systematic_id "SPAPB24D3.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; colour "8" ; gene "SPAPB24D3.07c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 2958024 2958926 . - . mRNA SPAPB24D3.07c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 2958925 2959122 . - . mRNA SPAPB24D3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB24D3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 2959156 2959658 . + . misc_RNA SPNCRNA.210 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.210" ; synonym "SPNG549" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 2961153 2961198 . - . mRNA SPAPB24D3.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB24D3.08c" ; systematic_id "SPAPB24D3.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2961199 2962248 . - . mRNA SPAPB24D3.08c ; systematic_id "SPAPB24D3.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML131W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm" ; gene "SPAPB24D3.08c" ; product "NADP-dependent oxidoreductase (predicted)" ;
chromosome1 GeneDB CDS 2961199 2962248 . - . mRNA SPAPB24D3.08c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 2962247 2962421 . - . mRNA SPAPB24D3.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB24D3.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2962954 2963161 . - . mRNA SPAPB24D3.09c ; Alias "pdr1" ; ID "SPAPB24D3.09c" ; systematic_id "SPAPB24D3.09c" ; primary_name "pdr1" ; gene "pdr1 ||| SPAPB24D3.09c" ; note "mRNA from AU010565" ;
chromosome1 GeneDB CDS_parts 2963162 2967352 . - . mRNA SPAPB24D3.09c ; Alias "pdr1" ; systematic_id "SPAPB24D3.09c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=PDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YDR011W and YNR070W and YPL058C and YOR328W and YOR153W and YDR406W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005886; plasma membrane
GO:0055085; tranmembrane transport
GO:0005789; endoplasmic reticulum membrane
GO:0043492; ATPase activity, coupled to movement of substances
GO:0005524; ATP binding" ; gene "pdr1 ||| SPAPB24D3.09c" ; primary_name "pdr1" ; product "ABC transporter Pdr1" ;
chromosome1 GeneDB CDS 2963162 2967352 . - . mRNA SPAPB24D3.09c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2967351 2967425 . - . mRNA SPAPB24D3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB24D3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2967916 2968078 . - . mRNA SPAPB24D3.10c ; Alias "agl1" ; ID "SPAPB24D3.10c" ; db_xref "EMBL:AB045751" ; systematic_id "SPAPB24D3.10c" ; primary_name "agl1" ; gene "agl1 ||| agl ||| SPAPB24D3.10c" ;
chromosome1 GeneDB CDS_parts 2968079 2970988 . - . mRNA SPAPB24D3.10c ; systematic_id "SPAPB24D3.10c" ; colour "2" ; gene "agl1 ||| agl ||| SPAPB24D3.10c" ; Alias "agl1" ; synonym "agl" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC922.02c and SPAC30D11.01c; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11298744; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog (cannot be distinguished); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0005576; extracellular region
GO:0004558; alpha-glucosidase activity
GO:0044247; cellular polysaccharide catabolic process
GO:0009313; oligosaccharide catabolism" ; primary_name "agl1" ; product "alpha-glucosidase Agl1" ; EC_number "3.2.1.20" ;
chromosome1 GeneDB CDS 2968079 2970988 . - . mRNA SPAPB24D3.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2970989 2972021 . - . mRNA SPAPB24D3.10c ; Alias "agl1" ; ID "SPAPB24D3.10c" ; db_xref "EMBL:AB045751" ; systematic_id "SPAPB24D3.10c" ; primary_name "agl1" ; gene "agl1 ||| agl ||| SPAPB24D3.10c" ;
chromosome1 GeneDB misc_RNA 2975608 2976007 . + . misc_RNA SPNCRNA.31 ; systematic_id "SPNCRNA.31" ; gene "prl31 ||| SPNCRNA.31" ; note "on Friday 7th November 2008, this feature was moved from the opposite strand" ; db_xref "PMID:12597277 ||| EMBL:AB084843" ; Alias "prl31" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl31" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome1 GeneDB rRNA 2976790 2976979 . + . rRNA SPRRNA.13 ; systematic_id "SPRRNA.13" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.13" ; product "5S rRNA" ; note "784 (+1) 22 210 SPRG5S yeast (s.pombe) 5s rRNA gene, clone pym3" ;
chromosome1 GeneDB CDS_parts 2977811 2979298 . + . mRNA SPAPB1A11.01 ; systematic_id "SPAPB1A11.01" ; colour "7" ; gene "SPAPB24D3.11 ||| SPAPB1A11.01" ; Alias "mfc1" ; synonym "SPAPB24D3.11" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPBC1348.05 and SPCC1529.01 and SPBPB2B2.16c and SPAC750.02c; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0055085; transmembrane transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; primary_name "mfc1" ; product "membrane transporter (predicted)" ; reserved_name "mfc1" ;
chromosome1 GeneDB CDS 2977811 2979298 . + . mRNA SPAPB1A11.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 2978668 2978862 . + . misc_feature unknown_2497 ; note "nominal overlap with SPAPB1A11 S. pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 2980473 2981589 . + . mRNA SPAPB1A11.02 ; systematic_id "SPAPB1A11.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPAPB1A11.02" ; product "esterase/lipase (predicted)" ;
chromosome1 GeneDB CDS 2980473 2980532 . + . mRNA SPAPB1A11.02 ; colour "10" ;
chromosome1 GeneDB CDS 2980630 2981589 . + . mRNA SPAPB1A11.02 ; colour "10" ;
chromosome1 GeneDB misc_feature 2980533 2980538 . + . misc_feature unknown_2498 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2980618 2980629 . + . misc_feature unknown_2499 ; colour "6" ; note "ctaaccttgcag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 2984786 2986009 . + . mRNA SPAPB1A11.03 ; systematic_id "SPAPB1A11.03" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0004460; L-lactate dehydrogenase (cytochrome) activity
GO:0034599; cellular response to oxidative stress
GO:0006089; lactate metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML054C (C-term); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPAPB1A11.03" ; product "cytochrome b2 (L-lactate cytochrome-c oxidoreductase) (predicted)" ; EC_number "1.1.2.3" ;
chromosome1 GeneDB CDS 2984786 2986009 . + . mRNA SPAPB1A11.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 2985742 2986335 . - . mRNA SPAPB1A11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1A11.04c" ; systematic_id "SPAPB1A11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2986336 2988429 . - . mRNA SPAPB1A11.04c ; systematic_id "SPAPB1A11.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPAC1327.01C and SPBC530.11c; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAPB1A11.04c" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB CDS 2986336 2988429 . - . mRNA SPAPB1A11.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2988428 2988821 . - . mRNA SPAPB1A11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1A11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2989317 2989395 . + . mRNA SPAC31G5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2989396 2990460 . + . mRNA SPAC31G5.01 ; systematic_id "SPAC31G5.01" ; colour "2" ; gene "sap49 ||| SPAPB1A11.05 ||| SPAC31G5.01" ; Alias "sap49" ; db_xref "SPD:50/50C03" ; synonym "SPAPB1A11.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YOR319W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0003723; RNA binding" ; primary_name "sap49" ; product "RNA-binding protein Sap49" ;
chromosome1 GeneDB CDS 2989396 2989507 . + . mRNA SPAC31G5.01 ; colour "2" ;
chromosome1 GeneDB CDS 2989565 2990460 . + . mRNA SPAC31G5.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 2989508 2989513 . + . misc_feature unknown_2500 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2989771 2989870 . + . misc_feature unknown_2501 ; note "nominal overlap with SPAC31G5 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 2990461 2990691 . + . mRNA SPAC31G5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.01" ; systematic_id "SPAC31G5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 2990909 2990972 . + . mRNA SPAC31G5.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2990973 2991946 . + . mRNA SPAC31G5.02 ; db_xref "SPD:13/13H09" ; systematic_id "SPAC31G5.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR200W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0031505; fungal-type cell wall organization and biogenesis
GO:0006457; protein folding
GO:0034975; protein folding in the endoplasmic reticulum" ; gene "SPAC31G5.02" ; product "ER chaperone Rot1 (predicted)" ;
chromosome1 GeneDB CDS 2990973 2991107 . + . mRNA SPAC31G5.02 ; colour "7" ;
chromosome1 GeneDB CDS 2991157 2991271 . + . mRNA SPAC31G5.02 ; colour "7" ;
chromosome1 GeneDB CDS 2991498 2991946 . + . mRNA SPAC31G5.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 2991108 2991113 . + . misc_feature unknown_2502 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2991143 2991156 . + . misc_feature unknown_2503 ; colour "6" ; note "ctaaccctctgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2991272 2991277 . + . misc_feature unknown_2504 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 2991484 2991497 . + . misc_feature unknown_2505 ; colour "6" ; note "ctaacccaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 2991947 2992120 . + . mRNA SPAC31G5.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.02" ; systematic_id "SPAC31G5.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 2992573 2992582 . + . promoter unknown_2506 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB promoter 2992592 2992599 . + . promoter unknown_2507 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB CDS_parts 2992657 2993115 . + . mRNA SPAC31G5.03 ; systematic_id "SPAC31G5.03" ; colour "7" ; gene "rps1101 ||| rps11-1 ||| SPAC31G5.03" ; Alias "rps1101" ; db_xref "SPD:41/41C03" ; synonym "rps11-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR025W and YBR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; primary_name "rps1101" ; product "40S ribosomal protein S11 (predicted)" ;
chromosome1 GeneDB CDS 2992657 2993115 . + . mRNA SPAC31G5.03 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 2993441 2993497 . + . mRNA SPAC31G5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2993498 2994586 . + . mRNA SPAC31G5.04 ; db_xref "SPD:17/17A03" ; systematic_id "SPAC31G5.04" ; colour "2" ; GO "GO:0047046; homoisocitrate dehydrogenase activity
GO:0009085; lysine biosynthetic process
GO:0005739; mitochondrion
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAC31G5.04" ; product "homoisocitrate dehydrogenase" ; EC_number "1.1.1.87" ;
chromosome1 GeneDB CDS 2993498 2994586 . + . mRNA SPAC31G5.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 2994587 2994763 . + . mRNA SPAC31G5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.04" ; systematic_id "SPAC31G5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 2994927 2995038 . - . mRNA SPAC31G5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.05c" ; systematic_id "SPAC31G5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2995039 2995770 . - . mRNA SPAC31G5.05c ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00040; ||| KEGG:MAP00710; ||| SPD:08/08G07" ; systematic_id "SPAC31G5.05c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL121C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009052; pentose-phosphate shunt, non-oxidative branch
GO:0004750; ribulose-phosphate 3-epimerase activity
GO:0005829; cytosol" ; gene "SPAC31G5.05c" ; product "ribulose phosphate 3-epimerase (predicted)" ; EC_number "5.1.3.1" ;
chromosome1 GeneDB CDS 2995039 2995688 . - . mRNA SPAC31G5.05c ; colour "7" ;
chromosome1 GeneDB CDS 2995734 2995770 . - . mRNA SPAC31G5.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 2995689 2995702 . - . misc_feature unknown_2508 ; colour "6" ; note "ttaacacacgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 2995728 2995733 . - . misc_feature unknown_2509 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 2995769 2995915 . - . mRNA SPAC31G5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2996304 2997058 . + . mRNA SPAC31G5.06 ; db_xref "SPD:03/03G03" ; systematic_id "SPAC31G5.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR116W; date=20080901 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005739; mitochondrion" ; colour "10" ; gene "SPAC31G5.06" ; product "mitochondrial protein" ; note "orthology prediction pers. comm. Charly Chahwan" ;
chromosome1 GeneDB CDS 2996304 2996403 . + . mRNA SPAC31G5.06 ; colour "10" ;
chromosome1 GeneDB CDS 2996454 2997058 . + . mRNA SPAC31G5.06 ; colour "10" ;
chromosome1 GeneDB CDS_parts 2997453 2998157 . + . mRNA SPAC31G5.07 ; systematic_id "SPAC31G5.07" ; colour "2" ; db_xref "SPD:05/05D07" ; Alias "dni1" ; GO "GO:0005886; plasma membrane
GO:0043332; mating projection tip
GO:0070867; mating projection tip membrane
GO:0032220; plasma membrane fusion during cytogamy" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR040W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; cv=warning; date=20090507 ||| term=name description, Delayed minus- Nitrogen Induction; cv=name_description; db_xref=PMID:19627505; date=20090817 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:19627570; date=20090817 ||| term=localization dependent on Fus1; db_xref=PMID:19627570; date=20090817 ||| term=localization dependent on actin; db_xref=PMID:19627570; date=20090817 ||| term=localization dependent on lipid rafts; db_xref=PMID:19627570; date=20090817" ; primary_name "dni1" ; product "tetraspan protein Dni1" ;
chromosome1 GeneDB CDS 2997453 2998157 . + . mRNA SPAC31G5.07 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 2998998 2999087 . + . mRNA SPAC31G5.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 2999088 2999843 . + . mRNA SPAC31G5.08 ; systematic_id "SPAC31G5.08" ; colour "2" ; gene "ups1 ||| ups ||| SPAC31G5.08" ; Alias "ups1" ; db_xref "SPD:31/31H07" ; synonym "ups" ; GO "GO:0004852; uroporphyrinogen-III synthase activity
GO:0006783; heme biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060725 ||| term=orthologous to S. cerevisiae YOR278W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, alternative transcripts, alternative polyadenylation; db_xref=EMBL:AB084886; date=20100606" ; primary_name "ups1" ; product "uroporphyrinogen-III synthase Ups1" ; EC_number "4.2.1.75" ;
chromosome1 GeneDB CDS 2999088 2999843 . + . mRNA SPAC31G5.08 ; colour "2" ;
chromosome1 GeneDB polyA_site 2999546 2999546 . - . mRNA SPAC31G5.09c ; temporary_systematic_id "SPAC31G5.09c" ; db_xref "EMBL:AB084886" ;
chromosome1 GeneDB 3'-UTR 2999546 2999849 . - . mRNA SPAC31G5.09c ; Alias "spk1" ; ID "SPAC31G5.09c" ; db_xref "SPD:32/32E07 ||| EMBL:AB084886 ||| EMBL:AB084887" ; systematic_id "SPAC31G5.09c" ; primary_name "spk1" ; gene "spk1 ||| SPAC31G5.09c" ; note "alternative UTRs for this feature are represented by different polyA sites" ;
chromosome1 GeneDB polyA_site 2999663 2999663 . - . mRNA SPAC31G5.09c ; temporary_systematic_id "SPAC31G5.09c" ; db_xref "EMBL:AB084887" ;
chromosome1 GeneDB CDS_parts 2999850 3000968 . - . mRNA SPAC31G5.09c ; systematic_id "SPAC31G5.09c" ; colour "2" ; gene "spk1 ||| SPAC31G5.09c" ; Alias "spk1" ; db_xref "SPD:32/32E07" ; GO "GO:0004707; MAP kinase activity
GO:0000751; cell cycle arrest in response to pheromone
GO:0006468; protein amino acid phosphorylation
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0000165; MAPKKK cascade
GO:0005634; nucleus
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:8413241; date=19700101 ||| term=orthologous to S. cerevisiae YBL016W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spk1" ; product "MAP kinase Spk1" ;
chromosome1 GeneDB CDS 2999850 3000968 . - . mRNA SPAC31G5.09c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3000967 3000975 . - . mRNA SPAC31G5.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 3001761 3001930 . + . misc_RNA SPNCRNA.71 ; db_xref "EMBL:AB084882" ; systematic_id "SPNCRNA.71" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AB084882; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AB084882; date=20050412" ; gene "SPNCRNA.71" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB polyA_site 3001825 3001825 . - . mRNA unknown_2510 ; note "AB084883" ;
chromosome1 GeneDB misc_RNA 3001825 3003103 . - . misc_RNA SPNCRNA.72 ; db_xref "EMBL:AB084883" ; systematic_id "SPNCRNA.72" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AB084883; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AB084883; date=20050412" ; gene "SPNCRNA.72" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB polyA_site 3001930 3001930 . + . mRNA unknown_2511 ; note "AB084882" ;
chromosome1 GeneDB CDS_parts 3002057 3003766 . + . mRNA SPAC31G5.10 ; systematic_id "SPAC31G5.10" ; colour "10" ; gene "eta2 ||| SPAC31G5.10" ; Alias "eta2" ; db_xref "SPD:35/35E09" ; GO "GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "eta2" ; product "Myb family protein Eta2" ;
chromosome1 GeneDB CDS 3002057 3003766 . + . mRNA SPAC31G5.10 ; colour "10" ;
chromosome1 GeneDB polyA_site 3002834 3002834 . - . mRNA unknown_2512 ; note "AB084884" ;
chromosome1 GeneDB misc_RNA 3002834 3003255 . - . misc_RNA SPNCRNA.73 ; db_xref "EMBL:AB084884" ; systematic_id "SPNCRNA.73" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AB084884; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AB084884; date=20050412" ; gene "SPNCRNA.73" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB polyA_signal 3002976 3002976 . - . polyA_signal unknown_2513 ; note "AB084885" ;
chromosome1 GeneDB misc_RNA 3002976 3003758 . - . misc_RNA SPNCRNA.74 ; db_xref "EMBL:AB084885" ; systematic_id "SPNCRNA.74" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AB084885; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AB084885; date=20050412" ; gene "SPNCRNA.74" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB 3'-UTR 3003767 3004543 . + . mRNA SPAC31G5.10 ; Alias "eta2" ; ID "SPAC31G5.10" ; db_xref "SPD:35/35E09 ||| EMBL:AB084881" ; systematic_id "SPAC31G5.10" ; primary_name "eta2" ; gene "eta2 ||| SPAC31G5.10" ;
chromosome1 GeneDB misc_RNA 3003816 3004916 . + . misc_RNA SPNCRNA.01 ; systematic_id "SPNCRNA.01" ; gene "prl01 ||| prl1 ||| SPNCRNA.01" ; note "possibly part of the UTR of eta2" ; db_xref "PMID:12597277 ||| EMBL:AB084813" ; Alias "prl1" ; synonym "prl01" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl1" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome1 GeneDB polyA_site 3004543 3004543 . + . mRNA unknown_2514 ; note "AB084881" ;
chromosome1 GeneDB CDS_parts 3006138 3006845 . + . mRNA SPAC31G5.11 ; systematic_id "SPAC31G5.11" ; colour "2" ; gene "pac2 ||| SPAC31G5.11" ; Alias "pac2" ; db_xref "SPD:08/08D02" ; GO "GO:0031139; positive regulation of conjugation with cellular fusion
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL007W and YHR177W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "pac2" ; product "cAMP-independent regulatory protein Pac2" ;
chromosome1 GeneDB CDS 3006138 3006845 . + . mRNA SPAC31G5.11 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3006846 3007531 . + . mRNA SPAC31G5.11 ; Alias "pac2" ; ID "SPAC31G5.11" ; db_xref "SPD:08/08D02 ||| EMBL:AB084888" ; systematic_id "SPAC31G5.11" ; primary_name "pac2" ; gene "pac2 ||| SPAC31G5.11" ;
chromosome1 GeneDB polyA_site 3007531 3007531 . + . mRNA SPAC31G5.11 ; temporary_systematic_id "SPAC31G5.11" ; note "AB084888" ;
chromosome1 GeneDB CDS_parts 3008184 3009317 . - . mRNA SPAC31G5.12c ; systematic_id "SPAC31G5.12c" ; colour "2" ; gene "maf1 ||| n150 ||| SPAC31G5.12c" ; Alias "maf1" ; db_xref "SPD:40/40A10" ; synonym "n150" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:15590667; date=20081219" ; GO "GO:0016480; negative regulation of transcription from RNA polymerase III promoter
GO:0005634; nucleus
GO:0016564; transcription repressor activity
GO:0070217; TFIIIB complex assembly" ; primary_name "maf1" ; product "repressor of RNA polymerase III Maf1" ;
chromosome1 GeneDB CDS 3008184 3008795 . - . mRNA SPAC31G5.12c ; colour "2" ;
chromosome1 GeneDB CDS 3009160 3009258 . - . mRNA SPAC31G5.12c ; colour "2" ;
chromosome1 GeneDB CDS 3009312 3009317 . - . mRNA SPAC31G5.12c ; colour "2" ;
chromosome1 GeneDB misc_feature 3008796 3008810 . - . misc_feature unknown_2515 ; colour "6" ; note "ctaacaattttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3009137 3009503 . + . misc_feature SPNCRNA.523 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.523" ; synonym "SPNG563" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 3010087 3010443 . + . mRNA SPAC31G5.21 ; db_xref "SPD:02/02D08" ; systematic_id "SPAC31G5.21" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human FAM32A ortholog; date=20100301" ; colour "10" ; GO "GO:0005730; nucleolus" ; gene "SPAC31G5.21" ; product "human FAM32A homolog" ; note "cellular location and species distribution indicates a likely role in splicing" ;
chromosome1 GeneDB CDS 3010087 3010443 . + . mRNA SPAC31G5.21 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 3010444 3010546 . + . mRNA SPAC31G5.21 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.21" ; systematic_id "SPAC31G5.21" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3010654 3010978 . + . mRNA SPAC31G5.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3010979 3011905 . + . mRNA SPAC31G5.13 ; systematic_id "SPAC31G5.13" ; colour "2" ; gene "rpn11 ||| pad1 ||| sks1 ||| bfr2 ||| mts5 ||| SPAC31G5.13" ; Alias "rpn11" ; db_xref "SPD:12/12H09" ; synonym "pad1 ||| sks1 ||| bfr2 ||| mts5" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7769002; date=19700101 ||| term=orthologous to S. cerevisiae YFR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:7769002; date=20100705 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:7769002; date=20100705 ||| term=human PSMD14 ortholog; date=20101001" ; GO "GO:0000502; proteasome complex (sensu Eukaryota)
GO:0007346; regulation of mitotic cell cycle
GO:0000266; mitochondrial fission
GO:0005634; nucleus
GO:0034399; nucleur periphery
GO:0000502; protease complex
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0071947; protein deubiquitination involved in proteasomal ubiquitin-dependent protein catabolic process" ; primary_name "rpn11" ; product "19S proteasome regulatory subunit Rpn11" ;
chromosome1 GeneDB CDS 3010979 3011905 . + . mRNA SPAC31G5.13 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3011906 3012196 . + . mRNA SPAC31G5.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.13" ; systematic_id "SPAC31G5.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3012474 3012592 . + . mRNA SPAC31G5.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3012593 3013756 . + . mRNA SPAC31G5.14 ; systematic_id "SPAC31G5.14" ; colour "7" ; gene "gcv1 ||| n313 ||| SPAC31G5.14" ; Alias "gcv1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00670; ||| KEGG:MAP00910; ||| SPD:40/40D02" ; synonym "n313" ; GO "GO:0005960; glycine cleavage complex
GO:0005739; mitochondrion
GO:0004047; aminomethyltransferase activity
GO:0008483; transaminase activity
GO:0019464; glycine decarboxylation via glycine cleavage system" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gcv1" ; product "glycine decarboxylase T subunit (predicted)" ; EC_number "2.1.2.10" ;
chromosome1 GeneDB CDS 3012593 3013756 . + . mRNA SPAC31G5.14 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3013757 3014121 . + . mRNA SPAC31G5.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.14" ; systematic_id "SPAC31G5.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3014286 3014465 . + . mRNA SPAC31G5.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3014466 3017698 . + . mRNA SPAC31G5.15 ; literature "PMID:19286980" ; systematic_id "SPAC31G5.15" ; colour "2" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00561; ||| SPD:30/30B11" ; Alias "psd3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for ethanolamine; cv=phenotype; db_xref=PMID:198286980; qualifier=deletion; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPBC16E9.18; date=20090727 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19286980; date=20090727 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPBC16E9.18; date=20090727 ||| term=phenotype, cell morphology, misshapen cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPBC16E9.18; date=20090727 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YGR170W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0006656; phosphatidylcholine biosynthesis
GO:0004609; phosphatidylserine decarboxylase activity
GO:0000139; Golgi membrane
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0004609; phosphatidylserine decarboxylase activity
GO:0006646; phosphatidylethanolamine biosynthetic process
GO:0071775; regulation of cell cycle cytokinesis
GO:0008360; regulation of cell shape
GO:0005543; phospholipid binding" ; primary_name "psd3" ; product "phosphatidylserine decarboxylase Psd3" ; EC_number "4.1.1.65" ;
chromosome1 GeneDB CDS 3014466 3014663 . + . mRNA SPAC31G5.15 ; colour "2" ;
chromosome1 GeneDB CDS 3014720 3014947 . + . mRNA SPAC31G5.15 ; colour "2" ;
chromosome1 GeneDB CDS 3015007 3015472 . + . mRNA SPAC31G5.15 ; colour "2" ;
chromosome1 GeneDB CDS 3015515 3016560 . + . mRNA SPAC31G5.15 ; colour "2" ;
chromosome1 GeneDB CDS 3016601 3016775 . + . mRNA SPAC31G5.15 ; colour "2" ;
chromosome1 GeneDB CDS 3016826 3016967 . + . mRNA SPAC31G5.15 ; colour "2" ;
chromosome1 GeneDB CDS 3017011 3017698 . + . mRNA SPAC31G5.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 3014664 3014669 . + . misc_feature unknown_2516 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3014703 3014719 . + . misc_feature unknown_2517 ; colour "6" ; note "ctaatgttacgaatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3014948 3014953 . + . misc_feature unknown_2518 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3014994 3015006 . + . misc_feature unknown_2519 ; colour "6" ; note "ctaattcatacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3015473 3015478 . + . misc_feature unknown_2520 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3015501 3015514 . + . misc_feature unknown_2521 ; colour "6" ; note "ctaaccagtgatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3016561 3016566 . + . misc_feature unknown_2522 ; colour "6" ; note "gtcagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3016588 3016600 . + . misc_feature unknown_2523 ; colour "6" ; note "ttgacatctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3016776 3016781 . + . misc_feature unknown_2524 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3016812 3016825 . + . misc_feature unknown_2525 ; colour "6" ; note "cttaccatacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3016968 3016973 . + . misc_feature unknown_2526 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3016999 3017010 . + . misc_feature unknown_2527 ; colour "6" ; note "ttaacataatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3017699 3017806 . + . mRNA SPAC31G5.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.15" ; systematic_id "SPAC31G5.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3017918 3017926 . - . mRNA SPAC31G5.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.16c" ; systematic_id "SPAC31G5.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3017927 3018762 . - . mRNA SPAC31G5.16c ; systematic_id "SPAC31G5.16c" ; colour "2" ; gene "dpm1 ||| SPAC31G5.16c" ; Alias "dpm1" ; db_xref "SPD:10/10H03" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006487; protein amino acid N-linked glycosylation
GO:0006493; protein amino acid O-linked glycosylation
GO:0006506; GPI anchor biosynthesis
; dolichyl-phosphate beta-D- mannosyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR183W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dpm1" ; product "dolichol-phosphate mannosyltransferase catalytic subunit Dpm1" ; EC_number "2.4.1.83" ;
chromosome1 GeneDB CDS 3017927 3018073 . - . mRNA SPAC31G5.16c ; colour "2" ;
chromosome1 GeneDB CDS 3018199 3018762 . - . mRNA SPAC31G5.16c ; colour "2" ;
chromosome1 GeneDB misc_feature 3018074 3018086 . - . misc_feature unknown_2528 ; colour "6" ; note "ctaactattttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3018074 3018198 . - . intron SPAC31G5.16c ; Alias "dpm1" ; db_xref "SPD:10/10H03" ; systematic_id "SPAC31G5.16c" ; primary_name "dpm1" ; gene "dpm1 ||| SPAC31G5.16c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3018193 3018198 . - . misc_feature unknown_2529 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3018761 3018798 . - . mRNA SPAC31G5.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3019456 3019651 . - . mRNA SPAC31G5.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.17c" ; systematic_id "SPAC31G5.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3019652 3020305 . - . mRNA SPAC31G5.17c ; systematic_id "SPAC31G5.17c" ; colour "7" ; gene "rps1001 ||| rps10-1 ||| SPAC31G5.17c" ; Alias "rps1001" ; db_xref "SPD:07/07E09" ; synonym "rps10-1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR293W and YMR230W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000054; ribosome export from nucleus" ; primary_name "rps1001" ; product "40S ribosomal protein S10 (predicted)" ;
chromosome1 GeneDB CDS 3019652 3020010 . - . mRNA SPAC31G5.17c ; colour "7" ;
chromosome1 GeneDB CDS 3020230 3020305 . - . mRNA SPAC31G5.17c ; colour "7" ;
chromosome1 GeneDB misc_feature 3020011 3020024 . - . misc_feature unknown_2530 ; colour "6" ; note "ctaacctttaacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3020011 3020229 . - . intron SPAC31G5.17c ; Alias "rps1001" ; db_xref "SPD:07/07E09" ; systematic_id "SPAC31G5.17c" ; primary_name "rps1001" ; gene "rps1001 ||| rps10-1 ||| SPAC31G5.17c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3020224 3020229 . - . misc_feature unknown_2531 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3020304 3020336 . - . mRNA SPAC31G5.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 3020377 3020384 . - . promoter unknown_2532 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB promoter 3020392 3020401 . - . promoter unknown_2533 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB 3'-UTR 3020778 3020941 . - . mRNA SPAC31G5.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.18c" ; systematic_id "SPAC31G5.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3020942 3021733 . - . mRNA SPAC31G5.18c ; db_xref "SPD:43/43C06" ; systematic_id "SPAC31G5.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC31G5.18c" ; product "ubiquitin family, human C1ORF55 related" ;
chromosome1 GeneDB CDS 3020942 3021733 . - . mRNA SPAC31G5.18c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 3021732 3021766 . - . mRNA SPAC31G5.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3023308 3024417 . + . mRNA SPAC31G5.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31G5.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3024418 3027990 . + . mRNA SPAC31G5.19 ; db_xref "SPD:48/48D10" ; systematic_id "SPAC31G5.19" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=bromodomain; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YGR270W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016887; ATPase activity
GO:0005524; ATP binding" ; gene "SPAC31G5.19" ; product "ATPase with bromodomain protein (predicted)" ;
chromosome1 GeneDB CDS 3024418 3027990 . + . mRNA SPAC31G5.19 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3027991 3028037 . + . mRNA SPAC31G5.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31G5.19" ; systematic_id "SPAC31G5.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3028145 3028232 . - . mRNA SPAC1786.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1786.01c" ; systematic_id "SPAC1786.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3028233 3030323 . - . mRNA SPAC1786.01c ; systematic_id "SPAC1786.01c" ; colour "7" ; gene "SPAC31G5.20c ||| SPAC1786.01c" ; Alias "SPAC31G5.20c" ; db_xref "SPD:27/27G11" ; synonym "SPAC31G5.20c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR089C and YOR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004806; triacylglycerol lipase activity
GO:0005811; lipid particle
GO:0019433; triacylglycerol catabolism
GO:0006642; triacylglycerol mobilization" ; primary_name "SPAC31G5.20c" ; product "triacylglycerol lipase (predicted)" ; EC_number "3.1.1.3" ;
chromosome1 GeneDB CDS 3028233 3028520 . - . mRNA SPAC1786.01c ; colour "7" ;
chromosome1 GeneDB CDS 3028570 3029905 . - . mRNA SPAC1786.01c ; colour "7" ;
chromosome1 GeneDB CDS 3029972 3030188 . - . mRNA SPAC1786.01c ; colour "7" ;
chromosome1 GeneDB CDS 3030272 3030323 . - . mRNA SPAC1786.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 3028521 3028532 . - . misc_feature unknown_2534 ; colour "6" ; note "ctaacattttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3028521 3028569 . - . intron SPAC1786.01c ; Alias "SPAC31G5.20c" ; db_xref "SPD:27/27G11" ; systematic_id "SPAC1786.01c" ; primary_name "SPAC31G5.20c" ; gene "SPAC31G5.20c ||| SPAC1786.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3028564 3028569 . - . misc_feature unknown_2535 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3029396 3029499 . + . misc_feature unknown_2536 ; note "nominal overlap with cosmid SPAC31G5 and cosmid SPAC1786" ;
chromosome1 GeneDB misc_feature 3029906 3029925 . - . misc_feature unknown_2537 ; colour "6" ; note "ctaacatcatcaacttgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3029966 3029971 . - . misc_feature unknown_2538 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3030189 3030217 . - . misc_feature unknown_2539 ; colour "6" ; note "ttaacatttttcctttttaaaatttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3030266 3030271 . - . misc_feature unknown_2540 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3030322 3030455 . - . mRNA SPAC1786.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1786.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3030335 3033580 . - . misc_feature unknown_2541 ; note "low-complexity gene-free region" ;
chromosome1 GeneDB misc_feature 3031062 3033271 . + . misc_feature unknown_2542 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG572-74 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 3033581 3033916 . - . mRNA SPAC1786.04 ; db_xref "SPD:51/51G11" ; systematic_id "SPAC1786.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC1786.04" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3033581 3033916 . - . mRNA SPAC1786.04 ; colour "8" ;
chromosome1 GeneDB misc_RNA 3033837 3033955 . + . misc_RNA SPNCRNA.88 ; db_xref "EMBL:AU009220" ; systematic_id "SPNCRNA.88" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU009220; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU009220; date=20050412" ; colour "3" ; gene "SPNCRNA.88" ; product "non-coding RNA (predicted)" ; note "mRNA from spc11731 and AU009220, not associated with an ORF" ;
chromosome1 GeneDB 5'-UTR 3034139 3034881 . + . mRNA SPAC1786.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1786.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3034882 3036816 . + . mRNA SPAC1786.02 ; db_xref "SPD:37/37A11" ; systematic_id "SPAC1786.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; colour "7" ; GO "GO:0004620; phospholipase activity
GO:0046475; glycerophospholipid catabolism
GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region" ; gene "SPAC1786.02" ; product "phospholipase (predicted)" ;
chromosome1 GeneDB CDS 3034882 3036816 . + . mRNA SPAC1786.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3036817 3037167 . + . mRNA SPAC1786.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1786.02" ; systematic_id "SPAC1786.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3037718 3039565 . + . mRNA SPAC1786.03 ; systematic_id "SPAC1786.03" ; colour "2" ; gene "cut11 ||| SPAC1786.03 ||| SPAC24C9.01" ; Alias "cut11" ; db_xref "SPD:36/36H02" ; synonym "SPAC24C9.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9763447; date=19700101 ||| term=phenotype, spindle defects, monopolar spindle; qualifier=during_mitosis; db_xref=PMID:9763447; date=20100909 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:9763447; date=20100909 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118" ; GO "GO:0031965; nuclear membrane
GO:0005816; spindle pole body
GO:0090307; spindle assembly involved in mitosis
GO:0043495; protein anchor
GO:0071790; establishment of spindle pole body localization at the nuclear envelope" ; primary_name "cut11" ; product "spindle pole body docking protein Cut11" ;
chromosome1 GeneDB CDS 3037718 3037877 . + . mRNA SPAC1786.03 ; colour "2" ;
chromosome1 GeneDB CDS 3037920 3039565 . + . mRNA SPAC1786.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 3037878 3037883 . + . misc_feature unknown_2543 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 3037878 3037919 . + . intron SPAC1786.03 ; Alias "cut11" ; db_xref "SPD:36/36H02" ; systematic_id "SPAC1786.03" ; primary_name "cut11" ; gene "cut11 ||| SPAC1786.03 ||| SPAC24C9.01" ; note "intron confirmed from EST" ;
chromosome1 GeneDB misc_feature 3037906 3037919 . + . misc_feature unknown_2544 ; colour "6" ; note "ctaatatggattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3038651 3038746 . + . misc_feature unknown_2545 ; note "nominal overlap with cosmid SPAC24C9 and cosmid SPAC1786" ;
chromosome1 GeneDB 3'-UTR 3039566 3039659 . + . mRNA SPAC1786.03 ; Alias "cut11" ; ID "SPAC1786.03" ; db_xref "SPD:36/36H02" ; systematic_id "SPAC1786.03" ; primary_name "cut11" ; gene "cut11 ||| SPAC1786.03 ||| SPAC24C9.01" ; note "mRNA from AF079307" ;
chromosome1 GeneDB 3'-UTR 3039688 3039709 . - . mRNA SPAC24C9.02c ; ID "SPAC24C9.02c" ; db_xref "SPD:09/09A03" ; systematic_id "SPAC24C9.02c" ; gene "SPAC24C9.02c" ; note "mRNA from AU009793" ;
chromosome1 GeneDB CDS_parts 3039710 3040452 . - . mRNA SPAC24C9.02c ; db_xref "SPD:09/09A03" ; systematic_id "SPAC24C9.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0004408; holocytochrome-c synthase activity
GO:0018063; cytochrome c-heme linkage" ; gene "SPAC24C9.02c" ; product "cytochrome c1 heme lyase (predicted)" ;
chromosome1 GeneDB CDS 3039710 3039995 . - . mRNA SPAC24C9.02c ; colour "7" ;
chromosome1 GeneDB CDS 3040088 3040452 . - . mRNA SPAC24C9.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 3039996 3040011 . - . misc_feature unknown_2546 ; colour "6" ; note "ctaacttacatattag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3039996 3040087 . - . intron SPAC24C9.02c ; db_xref "SPD:09/09A03" ; systematic_id "SPAC24C9.02c" ; gene "SPAC24C9.02c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3040082 3040087 . - . misc_feature unknown_2547 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3040451 3040468 . - . mRNA SPAC24C9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24C9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3041127 3041281 . + . mRNA SPAC24C9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24C9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3041282 3042463 . + . mRNA SPAC24C9.03 ; systematic_id "SPAC24C9.03" ; colour "7" ; gene "SPAC24C9.03 ||| mvd1" ; Alias "mvd1" ; db_xref "SPD:18/18G02" ; GO "GO:0006696; ergosterol biosynthesis
GO:0004163; diphosphomevalonate decarboxylase activity
GO:0005829; cytosol
GO:0008299; isoprenoid biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR043W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mvd1" ; product "diphosphomevalonate decarboxylase (predicted)" ; EC_number "4.1.1.33" ; reserved_name "mvd1" ;
chromosome1 GeneDB CDS 3041282 3042463 . + . mRNA SPAC24C9.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3042464 3042720 . + . mRNA SPAC24C9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24C9.03" ; systematic_id "SPAC24C9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3042749 3042799 . - . mRNA SPAC24C9.16c ; Alias "cox8" ; ID "SPAC24C9.16c" ; db_xref "SPD:05/05A03" ; systematic_id "SPAC24C9.16c" ; primary_name "cox8" ; gene "cox8 ||| SPAC24C9.16c" ; note "mRNA from AU006588" ;
chromosome1 GeneDB CDS_parts 3042800 3043307 . - . mRNA SPAC24C9.16c ; systematic_id "SPAC24C9.16c" ; colour "7" ; gene "cox8 ||| SPAC24C9.16c" ; Alias "cox8" ; db_xref "SPD:05/05A03" ; GO "GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration
GO:0005751; respiratory chain complex IV (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR395C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cox8" ; product "cytochrome c oxidase subunit VIII (predicted)" ;
chromosome1 GeneDB CDS 3042800 3042817 . - . mRNA SPAC24C9.16c ; colour "7" ;
chromosome1 GeneDB CDS 3042872 3042909 . - . mRNA SPAC24C9.16c ; colour "7" ;
chromosome1 GeneDB CDS 3043096 3043157 . - . mRNA SPAC24C9.16c ; colour "7" ;
chromosome1 GeneDB CDS 3043225 3043307 . - . mRNA SPAC24C9.16c ; colour "7" ;
chromosome1 GeneDB misc_feature 3042818 3042839 . - . misc_feature unknown_2548 ; colour "6" ; note "ctaacctattgtttctgtttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3042818 3042871 . - . intron SPAC24C9.16c ; Alias "cox8" ; db_xref "SPD:05/05A03" ; systematic_id "SPAC24C9.16c" ; primary_name "cox8" ; gene "cox8 ||| SPAC24C9.16c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3042866 3042871 . - . misc_feature unknown_2549 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3042910 3042925 . - . misc_feature unknown_2550 ; colour "6" ; note "ctaacctagaattcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3042910 3043095 . - . intron SPAC24C9.16c ; Alias "cox8" ; db_xref "SPD:05/05A03" ; systematic_id "SPAC24C9.16c" ; primary_name "cox8" ; gene "cox8 ||| SPAC24C9.16c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3043090 3043095 . - . misc_feature unknown_2551 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3043158 3043185 . - . misc_feature unknown_2552 ; colour "6" ; note "ctaacaatatgctatttttgctcaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3043158 3043224 . - . intron SPAC24C9.16c ; Alias "cox8" ; db_xref "SPD:05/05A03" ; systematic_id "SPAC24C9.16c" ; primary_name "cox8" ; gene "cox8 ||| SPAC24C9.16c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3043219 3043224 . - . misc_feature unknown_2553 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3043306 3043325 . - . mRNA SPAC24C9.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24C9.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 3043430 3043787 . - . LTR unknown_2554 ; colour "4" ; note "Tf1-107 like" ;
chromosome1 GeneDB 5'-UTR 3044098 3044350 . + . mRNA SPAC24C9.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24C9.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3044351 3044716 . + . mRNA SPAC24C9.04 ; db_xref "SPD:02/02E08" ; systematic_id "SPAC24C9.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC24C9.04" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3044351 3044716 . + . mRNA SPAC24C9.04 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 3044717 3045034 . + . mRNA SPAC24C9.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24C9.04" ; systematic_id "SPAC24C9.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3045121 3047313 . - . mRNA SPAC24C9.05c ; systematic_id "SPAC24C9.05c" ; colour "10" ; gene "SPAC24C9.05c ||| mug70" ; note "removed annotations from PMID:20537132, pers. comm. Li-Lin Du" ; Alias "mug70" ; db_xref "SPD:37/37H04" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=octicosapeptide repeat; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "mug70" ; product "conserved protein Mug20" ;
chromosome1 GeneDB CDS 3045121 3047313 . - . mRNA SPAC24C9.05c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 3047312 3047344 . - . mRNA SPAC24C9.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24C9.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 3047677 3047758 . - . tRNA SPATRNASER.02 ; systematic_id "SPATRNASER.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033447; AGA codon-amino acid adaptor activity" ; gene "SPATRNASER.02" ; product "tRNA Serine" ; note "tRNA Ser anticodon AGA, Cove score 80.47" ;
chromosome1 GeneDB 3'-UTR 3048060 3048408 . - . mRNA SPAC24C9.06c ; ID "SPAC24C9.06c" ; db_xref "SPD:38/38C07" ; systematic_id "SPAC24C9.06c" ; gene "SPAC24C9.06c" ; note "mRNA from AU014505" ;
chromosome1 GeneDB CDS_parts 3048409 3050745 . - . mRNA SPAC24C9.06c ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00630; ||| KEGG:MAP00720; ||| SPD:38/38C07" ; systematic_id "SPAC24C9.06c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR304C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006101; citrate metabolism
GO:0006536; glutamate metabolism
GO:0019541; propionate metabolism
GO:0006099; tricarboxylic acid cycle
GO:0003994; aconitate hydratase activity
GO:0005829; cytosol
GO:0005759; mitochondrial matrix" ; gene "SPAC24C9.06c" ; product "aconitate hydratase (predicted)" ; EC_number "4.2.1.3" ;
chromosome1 GeneDB CDS 3048409 3050745 . - . mRNA SPAC24C9.06c ; colour "7" ;
chromosome1 GeneDB intron 3050746 3051374 . - . intron SPAC24C9.06c ; db_xref "SPD:38/38C07" ; systematic_id "SPAC24C9.06c" ; gene "SPAC24C9.06c" ; note "confirmed intron" ;
chromosome1 GeneDB 5'-UTR 3051375 3051451 . - . mRNA SPAC24C9.06c ; ID "SPAC24C9.06c" ; systematic_id "SPAC24C9.06c" ; note "mRNA from AU012243" ;
chromosome1 GeneDB 3'-UTR 3053472 3053597 . - . mRNA SPAC24C9.07c ; ID "SPAC24C9.07c" ; db_xref "SPD:39/39E08 ||| EMBL:AB054305" ; systematic_id "SPAC24C9.07c" ;
chromosome1 GeneDB CDS_parts 3053598 3059282 . - . mRNA SPAC24C9.07c ; systematic_id "SPAC24C9.07c" ; colour "2" ; db_xref "SPD:39/39E08" ; Alias "bgs2" ; synonym "meu21 ||| pgs2" ; GO "GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0030476; spore wall assembly (sensu Fungi)
GO:0000148; 1,3-beta-glucan synthase complex
GO:0003843; 1,3-beta-glucan synthase activity
GO:0005628; prospore membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061117 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:11069657; date=19700101 ||| term=orthologous to S. cerevisiae YLR342W and YGR032W and YMR306W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101" ; primary_name "bgs2" ; product "1,3-beta-glucan synthase subunit Bgs2" ; EC_number "2.4.1.34" ;
chromosome1 GeneDB CDS 3053598 3059282 . - . mRNA SPAC24C9.07c ; colour "2" ;
chromosome1 GeneDB misc_RNA 3060292 3061152 . + . misc_RNA SPNCRNA.212 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.212" ; synonym "SPNG580-82" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 3061423 3061610 . + . mRNA SPAC24C9.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24C9.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3061611 3063401 . + . mRNA SPAC24C9.08 ; db_xref "SPD:36/36D03" ; systematic_id "SPAC24C9.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0000324; vacuole (sensu Fungi)
GO:0004180; carboxypeptidase activity
GO:0051603; proteolysis involved in cellular protein catabolic process
GO:0007039; vacuolar protein catabolic process" ; gene "SPAC24C9.08" ; product "vacuolar carboxypeptidase (predicted)" ; EC_number "3.4.17.4" ;
chromosome1 GeneDB CDS 3061611 3063401 . + . mRNA SPAC24C9.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3063402 3063526 . + . mRNA SPAC24C9.08 ; ID "SPAC24C9.08" ; db_xref "SPD:36/36D03" ; systematic_id "SPAC24C9.08" ; gene "SPAC24C9.08" ; note "mRNA from BI542461" ;
chromosome1 GeneDB 5'-UTR 3063731 3063769 . + . mRNA SPAC24C9.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24C9.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3063770 3065191 . + . mRNA SPAC24C9.09 ; systematic_id "SPAC24C9.09" ; colour "7" ; gene "SPAC24C9.09" ; note "Has been mapped to YKL194C rather than YIL078W due to domain combination" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:44/44E12" ; GO "GO:0006435; threonyl-tRNA aminoacylation
GO:0004829; threonine-tRNA ligase activity
GO:0005739; mitochondrion
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL194C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "mitochondrial threonine-tRNA ligase (predicted)" ; EC_number "6.1.1.3" ;
chromosome1 GeneDB CDS 3063770 3065191 . + . mRNA SPAC24C9.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3065192 3065217 . + . mRNA SPAC24C9.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24C9.09" ; systematic_id "SPAC24C9.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3065329 3065417 . - . mRNA SPAC24C9.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC24C9.10c" ; systematic_id "SPAC24C9.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3065418 3066209 . - . mRNA SPAC24C9.10c ; systematic_id "SPAC24C9.10c" ; colour "7" ; gene "mrp4 ||| SPAC24C9.10c" ; Alias "mrp4" ; db_xref "SPD:10/10A05" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit
GO:0000049; tRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrp4" ; product "mitochondrial ribosomal protein subunit S2 (predicted)" ;
chromosome1 GeneDB CDS 3065418 3066209 . - . mRNA SPAC24C9.10c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3066208 3066260 . - . mRNA SPAC24C9.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24C9.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3066462 3066587 . + . mRNA SPAC24C9.11 ; ID "SPAC24C9.11" ; systematic_id "SPAC24C9.11" ; gene "SPAC24C9.11" ; note "mRNA from AU009598" ;
chromosome1 GeneDB CDS_parts 3066588 3069054 . + . mRNA SPAC24C9.11 ; db_xref "SPD:28/28H02" ; systematic_id "SPAC24C9.11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR336C; date=19700101 ||| term=human NOM1 ortholog; date=20071202 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, acute myeloid leukemia; date=20090607 ||| term=disease associated, cancer; date=20090607 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005730; nucleolus
GO:0042274; ribosome small subunit biogenesis" ; gene "SPAC24C9.11" ; product "ribosome small subunit biogenesis protein (predicted)" ;
chromosome1 GeneDB CDS 3066588 3066657 . + . mRNA SPAC24C9.11 ; colour "7" ;
chromosome1 GeneDB CDS 3066707 3068370 . + . mRNA SPAC24C9.11 ; colour "7" ;
chromosome1 GeneDB CDS 3068414 3068734 . + . mRNA SPAC24C9.11 ; colour "7" ;
chromosome1 GeneDB CDS 3068782 3069054 . + . mRNA SPAC24C9.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 3066658 3066663 . + . misc_feature unknown_2555 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB intron 3066658 3066706 . + . intron SPAC24C9.11 ; db_xref "SPD:28/28H02" ; systematic_id "SPAC24C9.11" ; gene "SPAC24C9.11" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3066691 3066706 . + . misc_feature unknown_2556 ; colour "6" ; note "ttaaccaaattgatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3068371 3068376 . + . misc_feature unknown_2557 ; colour "6" ; note "gtattc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3068401 3068413 . + . misc_feature unknown_2558 ; colour "6" ; note "ctaacaaacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3068735 3068740 . + . misc_feature unknown_2559 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3068767 3068781 . + . misc_feature unknown_2560 ; colour "6" ; note "ctaactcaattttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3069055 3069156 . + . mRNA SPAC24C9.11 ; ID "SPAC24C9.11" ; db_xref "SPD:28/28H02" ; systematic_id "SPAC24C9.11" ; gene "SPAC24C9.11" ; note "mRNA from AU012722" ;
chromosome1 GeneDB 3'-UTR 3069322 3069613 . - . mRNA SPAC24C9.12c ; ID "SPAC24C9.12c" ; db_xref "SPD:21/21G01" ; systematic_id "SPAC24C9.12c" ; gene "SPAC24C9.12c" ; note "mRNA from AU013689" ;
chromosome1 GeneDB CDS_parts 3069614 3071017 . - . mRNA SPAC24C9.12c ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00310; ||| KEGG:MAP00460; ||| KEGG:MAP00670; ||| KEGG:MAP00680; ||| SPD:21/21G01" ; systematic_id "SPAC24C9.12c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR058C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; GO "GO:0006544; glycine metabolism
GO:0006563; L-serine metabolism
GO:0006730; one-carbon compound metabolism
GO:0004372; glycine hydroxymethyltransferase activity
GO:0005737; cytoplasm" ; gene "SPAC24C9.12c" ; product "glycine hydroxymethyltransferase (predicted)" ; EC_number "2.1.2.1" ;
chromosome1 GeneDB CDS 3069614 3071017 . - . mRNA SPAC24C9.12c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3071016 3071102 . - . mRNA SPAC24C9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24C9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3071584 3071684 . - . mRNA SPAC24C9.13c ; Alias "mrp10" ; ID "SPAC24C9.13c" ; db_xref "SPD:01/01F10" ; systematic_id "SPAC24C9.13c" ; primary_name "mrp10" ; gene "mrp10 ||| SPAC24C9.13c" ; note "mRNA from AU013846" ;
chromosome1 GeneDB CDS_parts 3071685 3072004 . - . mRNA SPAC24C9.13c ; systematic_id "SPAC24C9.13c" ; colour "7" ; gene "mrp10 ||| SPAC24C9.13c" ; Alias "mrp10" ; db_xref "SPD:01/01F10" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CHCH domain; date=19700101 ||| term=orthologous to S. cerevisiae YDL045W-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mrp10" ; product "mitochondrial ribosomal protein subunit Mrp10 (predicted)" ;
chromosome1 GeneDB CDS 3071685 3071750 . - . mRNA SPAC24C9.13c ; colour "7" ;
chromosome1 GeneDB CDS 3071804 3072004 . - . mRNA SPAC24C9.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 3071751 3071771 . - . misc_feature unknown_2561 ; colour "6" ; note "ctactgacagtttttttttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3071751 3071803 . - . intron SPAC24C9.13c ; Alias "mrp10" ; db_xref "SPD:01/01F10" ; systematic_id "SPAC24C9.13c" ; primary_name "mrp10" ; gene "mrp10 ||| SPAC24C9.13c" ; note "intron confirmed by EST" ;
chromosome1 GeneDB misc_feature 3071798 3071803 . - . misc_feature unknown_2562 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3072005 3072124 . - . mRNA SPAC24C9.13c ; Alias "mrp10" ; ID "SPAC24C9.13c" ; systematic_id "SPAC24C9.13c" ; primary_name "mrp10" ; gene "mrp10 ||| SPAC24C9.13c" ; note "mRNA from AU013846" ;
chromosome1 GeneDB LTR 3072450 3072805 . + . LTR unknown_2563 ; colour "4" ; note "Tf1 type LTR" ;
chromosome1 GeneDB 5'-UTR 3072861 3073177 . + . mRNA SPAC24C9.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC24C9.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3073178 3074167 . + . mRNA SPAC24C9.14 ; systematic_id "SPAC24C9.14" ; colour "2" ; db_xref "SPD:14/14D04" ; Alias "otu1" ; synonym "mug141" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL044C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=name description, OTU family; cv=name_description; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human YOD1 ortholog; date=20101001" ; primary_name "otu1" ; product "ubiquitin-specific cysteine protease, OTU family, Otu1" ;
chromosome1 GeneDB CDS 3073178 3074167 . + . mRNA SPAC24C9.14 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3074338 3074466 . - . mRNA SPAC24C9.15c ; ID "SPAC24C9.15c" ; db_xref "SPD:44/44H02 ||| EMBL:AB054312" ; systematic_id "SPAC24C9.15c" ;
chromosome1 GeneDB CDS_parts 3074467 3075988 . - . mRNA SPAC24C9.15c ; systematic_id "SPAC24C9.15c" ; colour "2" ; db_xref "SPD:44/44H02" ; Alias "spn5" ; synonym "mde9 ||| meu28" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:10747048; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101" ; GO "GO:0005525; GTP binding" ; primary_name "spn5" ; product "septin Spn5" ;
chromosome1 GeneDB CDS 3074467 3074719 . - . mRNA SPAC24C9.15c ; colour "2" ;
chromosome1 GeneDB CDS 3074772 3075353 . - . mRNA SPAC24C9.15c ; colour "2" ;
chromosome1 GeneDB CDS 3075429 3075988 . - . mRNA SPAC24C9.15c ; colour "2" ;
chromosome1 GeneDB misc_feature 3074720 3074735 . - . misc_feature unknown_2564 ; colour "6" ; note "ctaactaaagatatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3074720 3074771 . - . intron SPAC24C9.15c ; db_xref "SPD:44/44H02" ; systematic_id "SPAC24C9.15c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3074766 3074771 . - . misc_feature unknown_2565 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3075354 3075365 . - . misc_feature unknown_2566 ; colour "6" ; note "ctaaccttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3075423 3075428 . - . misc_feature unknown_2567 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_RNA 3076914 3077076 . + . misc_RNA SPNCRNA.213 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.213" ; synonym "SPNG583" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_feature 3077235 3077316 . + . misc_feature unknown_2568 ; note "nominal overlap with cosmid SPAC16A10 and cosmid SPAC24C9" ;
chromosome1 GeneDB CDS_parts 3077676 3080168 . + . mRNA SPAC16A10.01 ; db_xref "SPD:29/29A03" ; systematic_id "SPAC16A10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL107C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC16A10.01" ; product "DUF1212 family protein" ;
chromosome1 GeneDB CDS 3077676 3080168 . + . mRNA SPAC16A10.01 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 3080169 3080344 . + . mRNA SPAC16A10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16A10.01" ; systematic_id "SPAC16A10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3080560 3081567 . - . mRNA SPAC16A10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16A10.03c" ; systematic_id "SPAC16A10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3081002 3081011 . + . mRNA SPAC16A10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16A10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3081012 3081472 . + . mRNA SPAC16A10.02 ; systematic_id "SPAC16A10.02" ; colour "2" ; gene "SPAC16A10.02 ||| sub1" ; Alias "sub1" ; db_xref "SPD:04/04B05" ; GO "GO:0005634; nucleus
GO:0003690; double-stranded DNA binding
GO:0003697; single-stranded DNA binding
GO:0003713; transcription coactivator activity
GO:0060261; positive regulation of transcription initiation from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sub1" ; product "transcription coactivator PC4" ;
chromosome1 GeneDB CDS 3081012 3081104 . + . mRNA SPAC16A10.02 ; colour "2" ;
chromosome1 GeneDB CDS 3081155 3081472 . + . mRNA SPAC16A10.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 3081105 3081110 . + . misc_feature unknown_2569 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3081133 3081154 . + . misc_feature unknown_2570 ; colour "6" ; note "ctaataaattgttttggattag, splice branch and acceptor s equence" ;
chromosome1 GeneDB 3'-UTR 3081473 3082320 . + . mRNA SPAC16A10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16A10.02" ; systematic_id "SPAC16A10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3081568 3084244 . - . mRNA SPAC16A10.03c ; db_xref "SPD:47/47A12" ; systematic_id "SPAC16A10.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination
GO:0048278; vesicle docking" ; gene "SPAC16A10.03c" ; product "zinc finger protein Pep5/Vps11-like (predicted)" ;
chromosome1 GeneDB CDS 3081568 3083850 . - . mRNA SPAC16A10.03c ; colour "7" ;
chromosome1 GeneDB CDS 3083902 3084081 . - . mRNA SPAC16A10.03c ; colour "7" ;
chromosome1 GeneDB CDS 3084125 3084244 . - . mRNA SPAC16A10.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 3083851 3083876 . - . misc_feature unknown_2571 ; colour "6" ; note "ctaatataatttatgttggttgtag, splice branch and accepto r sequence" ;
chromosome1 GeneDB misc_feature 3083896 3083901 . - . misc_feature unknown_2572 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3084082 3084096 . - . misc_feature unknown_2573 ; colour "6" ; note "ctaacatgaaattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3084119 3084124 . - . misc_feature unknown_2574 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3084245 3084667 . - . mRNA SPAC16A10.03c ; ID "SPAC16A10.03c" ; systematic_id "SPAC16A10.03c" ; gene "SPAC16A10.03c" ; note "mRNA from AU007677" ;
chromosome1 GeneDB misc_RNA 3084610 3086022 . - . misc_RNA SPNCRNA.214 ; systematic_id "SPNCRNA.214" ; gene "ter1" ; db_xref "PMID:18157152 ||| PMID:18157149 ||| EMBL:EU239354" ; Alias "ter1" ; synonym "SPNG585" ; GO "GO:0000333; telomerase catalytic core complex
GO:0000333; telomerase catalytic core complex
GO:0005515; protein binding
GO:0000332; template for synthesis of G-rich strand of telomere DNA activity
GO:0007004; telomere maintenance via telomerase
GO:0007004; telomere maintenance via telomerase" ; controlled_curation "term=modification, RNA trimethylguanosine capped; cv=pt_mod; evidence=IDA; db_xref=PMID:18157152; date=20080121 ||| term=; db_xref=PMID:18157152; date=20080428" ; primary_name "ter1" ; product "telomerase RNA" ;
chromosome1 GeneDB tRNA 3086310 3086392 . + . tRNA SPATRNALYS.05 ; systematic_id "SPATRNALYS.05" ; GO "GO:0006414; translational elongation
GO:0033417; CTT codon-amino acid adaptor activity
GO:0005737; cytoplasm" ; gene "SPATRNALYS.05" ; product "tRNA Lysine" ; note "tRNA Lys anticodon CTT, Cove score 74.69" ;
chromosome1 GeneDB misc_RNA 3086472 3086930 . + . misc_RNA SPNCRNA.215 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.215" ; synonym "SPNG586" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 3087038 3088044 . + . mRNA SPAC16A10.04 ; systematic_id "SPAC16A10.04" ; colour "2" ; gene "rho4 ||| SPAC16A10.04" ; db_xref "SPD:16/16F09" ; Alias "rho4" ; GO "GO:0000935; barrier septum
GO:0005938; cell cortex
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0032956; regulation of actin cytoskeleton organization
GO:0032955; regulation of barrier septum formation
GO:0008360; regulation of cell shape
GO:0031505; cell wall organization and biogenesis
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0030994; primary cell septum disassembly
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12653963; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; qualifier=deletion; db_xref=PMID:12653963; date=20100705 ||| term=Rho family; date=19700101 ||| term=orthologous to S. cerevisiae YKR055W; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090501" ; primary_name "rho4" ; product "Rho family GTPase Rho4" ;
chromosome1 GeneDB CDS 3087038 3087071 . + . mRNA SPAC16A10.04 ; colour "2" ;
chromosome1 GeneDB CDS 3087127 3087168 . + . mRNA SPAC16A10.04 ; colour "2" ;
chromosome1 GeneDB CDS 3087230 3087276 . + . mRNA SPAC16A10.04 ; colour "2" ;
chromosome1 GeneDB CDS 3087384 3087587 . + . mRNA SPAC16A10.04 ; colour "2" ;
chromosome1 GeneDB CDS 3087704 3087838 . + . mRNA SPAC16A10.04 ; colour "2" ;
chromosome1 GeneDB CDS 3087895 3088044 . + . mRNA SPAC16A10.04 ; colour "2" ;
chromosome1 GeneDB intron 3087072 3087126 . + . intron SPAC16A10.04 ; Alias "rho4" ; db_xref "SPD:16/16F09" ; systematic_id "SPAC16A10.04" ; primary_name "rho4" ; gene "rho4 ||| SPAC16A10.04" ; note "confirmed, PMID:12653963" ;
chromosome1 GeneDB misc_feature 3087115 3087126 . + . misc_feature unknown_2575 ; colour "6" ; note "ctaatttttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3087169 3087174 . + . misc_feature unknown_2576 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB intron 3087169 3087229 . + . intron SPAC16A10.04 ; Alias "rho4" ; db_xref "SPD:16/16F09" ; systematic_id "SPAC16A10.04" ; primary_name "rho4" ; gene "rho4 ||| SPAC16A10.04" ; note "confirmed, PMID:12653963" ;
chromosome1 GeneDB misc_feature 3087212 3087229 . + . misc_feature unknown_2577 ; colour "6" ; note "ctaatgcttgatgtatag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB misc_feature 3087277 3087282 . + . misc_feature unknown_2578 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB intron 3087277 3087383 . + . intron SPAC16A10.04 ; Alias "rho4" ; db_xref "SPD:16/16F09" ; systematic_id "SPAC16A10.04" ; primary_name "rho4" ; gene "rho4 ||| SPAC16A10.04" ; note "confirmed, PMID:12653963" ;
chromosome1 GeneDB misc_feature 3087369 3087383 . + . misc_feature unknown_2579 ; colour "6" ; note "ctaacatcatgctag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3087588 3087593 . + . misc_feature unknown_2580 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3087588 3087703 . + . intron SPAC16A10.04 ; Alias "rho4" ; db_xref "SPD:16/16F09" ; systematic_id "SPAC16A10.04" ; primary_name "rho4" ; gene "rho4 ||| SPAC16A10.04" ; note "confirmed, PMID:12653963" ;
chromosome1 GeneDB misc_feature 3087686 3087703 . + . misc_feature unknown_2581 ; colour "6" ; note "ctaacatttttctttcag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB misc_feature 3087839 3087844 . + . misc_feature unknown_2582 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3087839 3087894 . + . intron SPAC16A10.04 ; Alias "rho4" ; db_xref "SPD:16/16F09" ; systematic_id "SPAC16A10.04" ; primary_name "rho4" ; gene "rho4 ||| SPAC16A10.04" ; note "confirmed, PMID:12653963" ;
chromosome1 GeneDB misc_feature 3087882 3087894 . + . misc_feature unknown_2583 ; colour "6" ; note "ttaacatatttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 3088045 3088536 . + . mRNA SPAC16A10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16A10.04" ; systematic_id "SPAC16A10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3088867 3089052 . - . mRNA SPAC16A10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16A10.05c" ; systematic_id "SPAC16A10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3089053 3089310 . - . mRNA SPAC16A10.05c ; systematic_id "SPAC16A10.05c" ; colour "2" ; gene "dad1 ||| SPAC16A10.05c" ; Alias "dad1" ; db_xref "SPD:01/01B11" ; GO "GO:0007052; mitotic spindle organization and biogenesis
GO:0042729; DASH complex
GO:0031134; sister chromatid biorientation
GO:0005876; spindle microtubule
GO:0005816; spindle pole body
GO:0031617; NMS complex
GO:0031511; Mis6-Sim4 complex
GO:0034613; cellular protein localization
GO:0000779; condensed chromosome, pericentric region" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16079914; date=19700101 ||| term=orthologous to S. cerevisiae YDR016C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "dad1" ; product "DASH complex subunit Dad1" ;
chromosome1 GeneDB CDS 3089053 3089310 . - . mRNA SPAC16A10.05c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3089309 3089362 . - . mRNA SPAC16A10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16A10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3089583 3090697 . - . mRNA SPAC16A10.06c ; systematic_id "SPAC16A10.06c" ; colour "2" ; gene "nse2 ||| SPAC16A10.06c" ; Alias "nse2" ; obsolete_name "pli2" ; db_xref "SPD:43/43G10" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0005634; nucleus
GO:0019789; SUMO ligase activity
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0016925; protein sumoylation
GO:0048478; replication fork protection" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:15601841; date=20060504 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12966087; date=20060504 ||| term=modification, sumoylated; cv=pt_mod; db_xref=PMID:15601841; date=20060504 ||| term=zinc finger protein; date=20060504 ||| term=zf-MIZ; qualifier=inferred from context; date=20060504 ||| term=orthologous to S. cerevisiae YEL019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nse2" ; product "Smc5-6 complex non-SMC subunit 2" ;
chromosome1 GeneDB CDS 3089583 3090047 . - . mRNA SPAC16A10.06c ; colour "2" ;
chromosome1 GeneDB CDS 3090112 3090285 . - . mRNA SPAC16A10.06c ; colour "2" ;
chromosome1 GeneDB CDS 3090533 3090697 . - . mRNA SPAC16A10.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 3090048 3090060 . - . misc_feature unknown_2584 ; colour "6" ; note "ctaacaaaattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3090106 3090111 . - . misc_feature unknown_2585 ; colour "6" ; note "gtagat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3090286 3090303 . - . misc_feature unknown_2586 ; colour "6" ; note "ctaacacttgccttttag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB misc_feature 3090527 3090532 . - . misc_feature unknown_2587 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3090696 3090735 . - . mRNA SPAC16A10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16A10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3091021 3091236 . - . mRNA SPAC16A10.07c ; Alias "taz1" ; ID "SPAC16A10.07c" ; db_xref "SPD:27/27C12" ; systematic_id "SPAC16A10.07c" ; primary_name "taz1" ; gene "taz1 ||| myb1 ||| myb ||| SPAC16A10.07c" ; note "mRNA from SPMYB" ;
chromosome1 GeneDB CDS_parts 3091237 3093228 . - . mRNA SPAC16A10.07c ; systematic_id "SPAC16A10.07c" ; colour "2" ; gene "taz1 ||| myb1 ||| myb ||| SPAC16A10.07c" ; note "provides a telomeric cap that prevents Ku from recognising telomeres as double strand breaks (Ku- dependent end-to-end fusions) (PMID 11172711) ||| requires a ss telomeric overhang for T-loop formation (PMID 15383525) ||| forms oligomeric donut structures (PMID 15383525)" ; Alias "taz1" ; db_xref "SPD:27/27C12" ; synonym "myb1 ||| myb" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, sumoylated; cv=pt_mod; db_xref=PMID:15932060; date=20061127 ||| term=phenotype, viable; cv=phenotype; date=20061127 ||| term=Myb family; cv=protein_family; date=20061127 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human TRF1 homolog; date=20071107 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=telobox motif; evidence=ISS; date=20081217 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:12620220; date=20101004" ; GO "GO:0000783; nuclear telomere cap complex
GO:0005724; nuclear telomeric heterochromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0042162; telomeric DNA binding
GO:0042162; telomeric DNA binding
GO:0000077; DNA damage checkpoint
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0006302; double-strand break repair
GO:0007131; meiotic recombination
GO:0007095; mitotic G2 checkpoint
GO:0031848; protection from non-homologous end joining at telomere
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0045141; telomere clustering
GO:0032201; telomere maintenance via semi- conservative replication
GO:0000723; telomere maintenance
GO:0031860; telomeric 3' overhang formation
GO:0031627; telomeric loop formation" ; primary_name "taz1" ; product "human TRF ortholog Taz1" ;
chromosome1 GeneDB CDS 3091237 3093228 . - . mRNA SPAC16A10.07c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3093708 3093972 . - . mRNA SPAC16A10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16A10.08c" ; systematic_id "SPAC16A10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3093973 3094885 . - . mRNA SPAC16A10.08c ; systematic_id "SPAC16A10.08c" ; colour "8" ; gene "SPAC16A10.08c ||| SPAC589.01c ||| mug74" ; Alias "mug74" ; db_xref "SPD:41/41G07" ; synonym "SPAC589.01c" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug74" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3093973 3094173 . - . mRNA SPAC16A10.08c ; colour "8" ;
chromosome1 GeneDB CDS 3094229 3094885 . - . mRNA SPAC16A10.08c ; colour "8" ;
chromosome1 GeneDB misc_feature 3094109 3094197 . + . misc_feature unknown_2588 ; note "nominal overlap with SPAC16A10 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 3094174 3094189 . - . misc_feature unknown_2589 ; colour "6" ; note "ctgaccaagcgaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3094223 3094228 . - . misc_feature unknown_2590 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 3095075 3098883 . - . mRNA SPAC589.02c ; systematic_id "SPAC589.02c" ; colour "2" ; gene "srb9 ||| spTrap240 ||| SPAC589.02c ||| med13" ; Alias "med13" ; db_xref "SPD:49/49G12" ; synonym "spTrap240 ||| srb9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human TRAP240/ARC250 ortholog; db_xref=PMID:12738880; date=19700101 ||| term=orthologous to S. cerevisiae YDR443C; date=19700101 ||| term=gene expression, transcriptionally represses genes involved in cell surface adhesion; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter" ; primary_name "med13" ; product "mediator complex subunit Srb9" ;
chromosome1 GeneDB CDS 3095075 3098590 . - . mRNA SPAC589.02c ; colour "2" ;
chromosome1 GeneDB CDS 3098626 3098781 . - . mRNA SPAC589.02c ; colour "2" ;
chromosome1 GeneDB CDS 3098878 3098883 . - . mRNA SPAC589.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 3098620 3098625 . - . misc_feature unknown_2591 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3098782 3098794 . - . misc_feature unknown_2592 ; colour "6" ; note "ttaacagtaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3098872 3098877 . - . misc_feature unknown_2593 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3099047 3099260 . - . mRNA SPAC589.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC589.03c" ; systematic_id "SPAC589.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3099261 3099830 . - . mRNA SPAC589.03c ; db_xref "SPD:41/41D06" ; systematic_id "SPAC589.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC589.03c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3099261 3099419 . - . mRNA SPAC589.03c ; colour "8" ;
chromosome1 GeneDB CDS 3099483 3099830 . - . mRNA SPAC589.03c ; colour "8" ;
chromosome1 GeneDB misc_feature 3099420 3099438 . - . misc_feature unknown_2594 ; colour "6" ; note "ctaatatcctctgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3099477 3099482 . - . misc_feature unknown_2595 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3099829 3100030 . - . mRNA SPAC589.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC589.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3100030 3100106 . + . mRNA SPAC589.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC589.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3100107 3101001 . + . mRNA SPAC589.04 ; systematic_id "SPAC589.04" ; colour "7" ; gene "SPAC589.04" ; note "metaxin 1 may be the ortholog of S. cerevisiae TOM37. multiply alignment has conserved common residues; TOM37 has a C term TMM region like many metaxin 1 family; both are mitochondrial membrane proteins involved in pre- protein import; S. cerevisiae ortholog for metaxin hasn't been identified and vice versa; can't make a Pfam family because it overlaps with glutathionine S-transferase" ; db_xref "SPD:41/41G04" ; GO "GO:0005741; mitochondrial outer membrane
GO:0045040; protein import into mitochondrial outer membrane
GO:0001401; mitochondrial sorting and assembly machinery complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "metaxin 1 (predicted)" ;
chromosome1 GeneDB CDS 3100107 3100667 . + . mRNA SPAC589.04 ; colour "7" ;
chromosome1 GeneDB CDS 3100747 3101001 . + . mRNA SPAC589.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 3100668 3100673 . + . misc_feature unknown_2596 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3100733 3100746 . + . misc_feature unknown_2597 ; colour "6" ; note "ctaacaaagcttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3101002 3101241 . + . mRNA SPAC589.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC589.04" ; systematic_id "SPAC589.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3101297 3102516 . - . mRNA SPAC589.05c ; db_xref "SPD:50/50D11" ; systematic_id "SPAC589.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human c9orf64 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC589.05c" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB CDS 3101297 3102149 . - . mRNA SPAC589.05c ; colour "10" ;
chromosome1 GeneDB CDS 3102283 3102431 . - . mRNA SPAC589.05c ; colour "10" ;
chromosome1 GeneDB CDS 3102478 3102516 . - . mRNA SPAC589.05c ; colour "10" ;
chromosome1 GeneDB misc_feature 3102150 3102167 . - . misc_feature unknown_2598 ; colour "6" ; note "ttaacgtcaaatctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3102277 3102282 . - . misc_feature unknown_2599 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3102432 3102451 . - . misc_feature unknown_2600 ; colour "6" ; note "ctaacatgaacgattgaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3102472 3102477 . - . misc_feature unknown_2601 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3102844 3102968 . - . mRNA SPAC589.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC589.06c" ; systematic_id "SPAC589.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3102969 3103719 . - . mRNA SPAC589.06c ; db_xref "SPD:41/41E12" ; systematic_id "SPAC589.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR106W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0016020; membrane
GO:0005739; mitochondrion
GO:2000185; regulation of phosphate transmembrane transport" ; gene "SPAC589.06c" ; product "pho88 family protein (predicted)" ;
chromosome1 GeneDB CDS 3102969 3103565 . - . mRNA SPAC589.06c ; colour "7" ;
chromosome1 GeneDB CDS 3103708 3103719 . - . mRNA SPAC589.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 3103566 3103585 . - . misc_feature unknown_2602 ; colour "6" ; note "ctgacaaaatcgaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3103566 3103707 . - . intron SPAC589.06c ; db_xref "SPD:41/41E12" ; systematic_id "SPAC589.06c" ; gene "SPAC589.06c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 3103702 3103707 . - . misc_feature unknown_2603 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3103718 3103771 . - . mRNA SPAC589.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC589.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3104101 3104342 . - . mRNA SPAC589.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC589.07c" ; systematic_id "SPAC589.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3104343 3105908 . - . mRNA SPAC589.07c ; systematic_id "SPAC589.07c" ; colour "2" ; gene "SPAC589.07c" ; Alias "atg18" ; db_xref "SPD:50/50H05" ; synonym "atg18a" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=WD repeat protein WIPI family; date=19700101 ||| term=orthologous to S. cerevisiae YFR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0005829; cytosol
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0035091; phosphoinositide binding
GO:0006623; protein targeting to vacuole
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; primary_name "atg18" ; product "WD repeat protein involved in autophagy Atg18a" ;
chromosome1 GeneDB CDS 3104343 3104364 . - . mRNA SPAC589.07c ; colour "2" ;
chromosome1 GeneDB CDS 3104433 3105153 . - . mRNA SPAC589.07c ; colour "2" ;
chromosome1 GeneDB CDS 3105219 3105378 . - . mRNA SPAC589.07c ; colour "2" ;
chromosome1 GeneDB CDS 3105441 3105547 . - . mRNA SPAC589.07c ; colour "2" ;
chromosome1 GeneDB CDS 3105613 3105686 . - . mRNA SPAC589.07c ; colour "2" ;
chromosome1 GeneDB CDS 3105871 3105908 . - . mRNA SPAC589.07c ; colour "2" ;
chromosome1 GeneDB misc_RNA 3104356 3105524 . + . misc_RNA SPNCRNA.560 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.560" ; synonym "SPNG2AF13" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB misc_feature 3104365 3104380 . - . misc_feature unknown_2604 ; colour "6" ; note "ttaaccctttatctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3104427 3104432 . - . misc_feature unknown_2605 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3105154 3105173 . - . misc_feature unknown_2606 ; colour "6" ; note "ctaattctttattgtaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3105213 3105218 . - . misc_feature unknown_2607 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3105379 3105391 . - . misc_feature unknown_2608 ; colour "6" ; note "ctaacgagtgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3105435 3105440 . - . misc_feature unknown_2609 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3105548 3105561 . - . misc_feature unknown_2610 ; colour "6" ; note "ctaacctaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3105607 3105612 . - . misc_feature unknown_2611 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3105687 3105699 . - . misc_feature unknown_2612 ; colour "6" ; note "ctaatacttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3105865 3105870 . - . misc_feature unknown_2613 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3106304 3106373 . - . mRNA SPAC589.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC589.08c" ; systematic_id "SPAC589.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3106374 3106841 . - . mRNA SPAC589.08c ; systematic_id "SPAC589.08c" ; colour "2" ; gene "dam1 ||| SPAC589.08c" ; Alias "dam1" ; db_xref "SPD:41/41C05" ; GO "GO:0007052; mitotic spindle organization and biogenesis
GO:0042729; DASH complex
GO:0031134; sister chromatid biorientation
GO:0005816; spindle pole body
GO:0000778; condensed nuclear chromosome kinetochore
GO:0071470; cellular response to osmotic stress
GO:0090007; regulation of mitotic anaphase
GO:0007094; mitotic spindle checkpoint
GO:0051314; attachment of spindle microtubules to mitotic chromosome
GO:0051314; attachment of spindle microtubules to mitotic chromosome
GO:0000779; condensed chromosome, pericentric region" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR113W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "dam1" ; product "DASH complex subunit Dam1" ;
chromosome1 GeneDB CDS 3106374 3106841 . - . mRNA SPAC589.08c ; colour "2" ;
chromosome1 GeneDB CDS_parts 3106840 3108006 . + . mRNA SPAC589.09 ; db_xref "SPD:50/50D05" ; systematic_id "SPAC589.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR380W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0031505; cell wall organization and biogenesis
GO:0015914; phospholipid transport
GO:0005737; cytoplasm
GO:0008525; phosphatidylcholine transporter activity
GO:0008526; phosphatidylinositol transporter activity" ; gene "SPAC589.09" ; product "sec14 cytosolic factor family (predicted)" ;
chromosome1 GeneDB CDS 3106840 3108006 . + . mRNA SPAC589.09 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3106840 3106910 . - . mRNA SPAC589.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC589.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3107937 3108100 . + . misc_feature unknown_2614 ; note "208 (+1) 29755 29918 AC018897 AC018897 Homo sapiens clone RP11-575J11, complete sequence." ;
chromosome1 GeneDB 3'-UTR 3108393 3108427 . - . mRNA SPAC589.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC589.10c" ; systematic_id "SPAC589.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3108428 3108880 . - . mRNA SPAC589.10c ; db_xref "SPD:41/41C01" ; systematic_id "SPAC589.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ribosomal-ubiquitin fusion protein; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=warning, identical paralog; cv=warning; date=19700101 ||| term=orthologous to S. cerevisiae YLR167W; date=19700101 ||| term=phenotype, cell cycle defects; qualifier=overexpression; db_xref=PMID:12237855; cv=phenotype; date=20080728 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0003735; structural constituent of ribosome
GO:0016567; protein ubiquitination
GO:0042254; ribosome biogenesis and assembly" ; gene "SPAC589.10c" ; product "ribomal-ubiquitin fusion protein Ubi5 (predicted)" ;
chromosome1 GeneDB CDS 3108428 3108880 . - . mRNA SPAC589.10c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3108879 3108885 . - . mRNA SPAC589.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC589.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3109174 3110015 . + . mRNA SPAC589.11 ; systematic_id "SPAC589.11" ; colour "7" ; gene "SPAC589.11 ||| mug82" ; Alias "mug82" ; db_xref "SPD:41/41F09" ; GO "GO:0003747; translation release factor activity
GO:0006415; translational termination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human ICT1 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YOL114C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "mug82" ; product "mitochondrial translation release factor (predicted)" ;
chromosome1 GeneDB CDS 3109174 3109312 . + . mRNA SPAC589.11 ; colour "7" ;
chromosome1 GeneDB CDS 3109606 3110015 . + . mRNA SPAC589.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 3109313 3109318 . + . misc_feature unknown_2615 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3109592 3109605 . + . misc_feature unknown_2616 ; colour "6" ; note "ttaactattgatag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 3110201 3113300 . + . mRNA SPAC589.12 ; systematic_id "SPAC589.12" ; colour "7" ; gene "SPAC589.12 ||| SPAC688.01" ; db_xref "SPD:49/49F09" ; synonym "SPAC688.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR017C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; GO "GO:0032153; cell division site
GO:0051286; cell tip
GO:0005887; integral to plasma membrane
GO:0006506; GPI anchor biosynthetic process
GO:0031505; cell wall organization and biogenesis
GO:0060237; regulation of fungal-type cell wall organization and biogenesis" ; product "glycosylceramide biosynthesis protein (predicted)" ;
chromosome1 GeneDB CDS 3110201 3110323 . + . mRNA SPAC589.12 ; colour "7" ;
chromosome1 GeneDB CDS 3110508 3113300 . + . mRNA SPAC589.12 ; colour "7" ;
chromosome1 GeneDB misc_feature 3110324 3110329 . + . misc_feature unknown_2617 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3110490 3110507 . + . misc_feature unknown_2618 ; colour "6" ; note "ctaacattatatttgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3112021 3112450 . + . misc_feature unknown_2619 ; note "nominal overlap with SPAC688 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 3113301 3113396 . + . mRNA SPAC589.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC589.12" ; systematic_id "SPAC589.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3113565 3114412 . - . mRNA SPAC688.02c ; systematic_id "SPAC688.02c" ; colour "2" ; gene "mis14 ||| SPAC688.02c" ; Alias "mis14" ; db_xref "SPD:11/11A09" ; GO "GO:0000818; MIND complex
GO:0031617; NMS complex
GO:0000777; condensed chromosome kinetochore
GO:0000779; condensed chromosome, pericentric region
GO:0000939; inner kinetochore of condensed chromosome
GO:0005634; nucleus
GO:0005515; protein binding
GO:0031055; chromatin remodeling at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0019236; response to pheromone" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL233W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis14" ; product "kinetochore protein Mis14" ;
chromosome1 GeneDB CDS 3113565 3113999 . - . mRNA SPAC688.02c ; colour "2" ;
chromosome1 GeneDB CDS 3114129 3114276 . - . mRNA SPAC688.02c ; colour "2" ;
chromosome1 GeneDB CDS 3114363 3114412 . - . mRNA SPAC688.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 3114000 3114010 . - . misc_feature unknown_2620 ; colour "6" ; note "ttaacatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3114123 3114128 . - . misc_feature unknown_2621 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3114277 3114291 . - . misc_feature unknown_2622 ; colour "6" ; note "ttaacactttataag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3114357 3114362 . - . misc_feature unknown_2623 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 3114616 3115442 . - . mRNA SPAC688.03c ; db_xref "SPD:43/43D02" ; systematic_id "SPAC688.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, ammecr1; date=19700101 ||| term=orthologous to S. cerevisiae YOR289W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human AMMECR1 ortholog; date=20100718" ; colour "10" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm" ; gene "SPAC688.03c" ; product "human AMMECR1 homolog" ;
chromosome1 GeneDB CDS 3114616 3114973 . - . mRNA SPAC688.03c ; colour "10" ;
chromosome1 GeneDB CDS 3115103 3115317 . - . mRNA SPAC688.03c ; colour "10" ;
chromosome1 GeneDB CDS 3115401 3115442 . - . mRNA SPAC688.03c ; colour "10" ;
chromosome1 GeneDB misc_feature 3114974 3114996 . - . misc_feature unknown_2624 ; colour "6" ; note "ctaatacaacattttaaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3115097 3115102 . - . misc_feature unknown_2625 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3115318 3115335 . - . misc_feature unknown_2626 ; colour "6" ; note "ctaatataaatggacaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3115395 3115400 . - . misc_feature unknown_2627 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3115713 3116066 . - . mRNA SPAC688.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC688.04c" ; systematic_id "SPAC688.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3116067 3116795 . - . mRNA SPAC688.04c ; systematic_id "SPAC688.04c" ; colour "2" ; gene "gst3 ||| SPAC688.04c" ; Alias "gst3" ; db_xref "SPD:08/08F09" ; GO "GO:0034599; cellular response to oxidative stress
GO:0042493; response to drug
GO:0004364; glutathione transferase activity
GO:0005737; cytoplasm
GO:0004602; glutathione peroxidase activity
GO:0042803; protein homodimerization activity
GO:0019430; removal of superoxide radicals" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=thioredoxin family; date=20081111 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "gst3" ; product "glutathione S-transferase Gst3" ; EC_number "2.5.1.18" ;
chromosome1 GeneDB CDS 3116067 3116795 . - . mRNA SPAC688.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3116796 3116867 . - . mRNA SPAC688.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC688.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3117363 3117656 . - . mRNA SPAC688.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC688.06c" ; systematic_id "SPAC688.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3117657 3119000 . - . mRNA SPAC688.06c ; systematic_id "SPAC688.06c" ; colour "2" ; gene "slx4 ||| SPAC688.06c" ; Alias "slx4" ; db_xref "SPD:20/20G07" ; GO "GO:0033557; Slx1-Slx4 complex
GO:0030874; nucleolar chromatin
GO:0004519; endonuclease activity
GO:0005515; protein binding
GO:0031297; collapsed replication fork processing
GO:0043007; maintenance of rDNA
GO:0034065; replication fork processing at rDNA locus
GO:0006261; DNA-dependent DNA replication" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14528010; date=19700101 ||| term=orthologous to S. cerevisiae YLR135W; date=19700101 ||| term=SAP domain; qualifier=inferred from context; date=19700101 ||| term=localization rDNA protrusions; db_xref=PMID:14528010; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "slx4" ; product "structure-specific endonuclease subunit" ;
chromosome1 GeneDB CDS 3117657 3118862 . - . mRNA SPAC688.06c ; colour "2" ;
chromosome1 GeneDB CDS 3118947 3119000 . - . mRNA SPAC688.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 3118863 3118877 . - . misc_feature unknown_2628 ; colour "6" ; note "ttaactgagctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3118941 3118946 . - . misc_feature unknown_2629 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3118999 3119170 . - . mRNA SPAC688.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC688.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3119379 3122495 . - . mRNA SPAC688.07c ; db_xref "SPD:30/30A10" ; systematic_id "SPAC688.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC688.07c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3119379 3122495 . - . mRNA SPAC688.07c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 3122494 3122584 . - . mRNA SPAC688.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC688.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3123163 3126653 . + . mRNA SPAC688.08 ; systematic_id "SPAC688.08" ; colour "2" ; gene "srb8 ||| med12 ||| SPAC688.08" ; Alias "srb8" ; db_xref "SPD:48/48F01" ; synonym "med12" ; GO "GO:0016592; Srb-mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=orthologous to S. cerevisiae YCR081W; date=19700101 ||| term=phenotype, colony morphology, flocculation; db_xref=PMID:18310102; cv=phenotype; date=20080729 ||| term=gene expression, transcriptionally represses genes involved in cell surface adhesion; db_xref=PMID:18310102; cv=gene_ex; date=20080729 ||| term=gene expression, transcriptionally represses genes involved in cell surface adhesion; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, possible frameshift; cv=warning; date=20100126" ; primary_name "srb8" ; product "mediator complex subunit Srb8" ;
chromosome1 GeneDB CDS 3123163 3125057 . + . mRNA SPAC688.08 ; colour "2" ;
chromosome1 GeneDB CDS 3125099 3126310 . + . mRNA SPAC688.08 ; colour "2" ;
chromosome1 GeneDB CDS 3126356 3126653 . + . mRNA SPAC688.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 3125058 3125063 . + . misc_feature unknown_2630 ; colour "6" ; note "gttaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3126311 3126316 . + . misc_feature unknown_2631 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3126341 3126355 . + . misc_feature unknown_2632 ; colour "6" ; note "ctaacattgatacag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 3127647 3128780 . + . mRNA SPAC688.09 ; db_xref "SPD:17/17G11" ; systematic_id "SPAC688.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YBR192W; date=19700101 ||| term=human SLC25A36 ortholog; qualifier=predicted; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0015218; pyrimidine nucleotide transporter activity
GO:0000002; mitochondrial genome maintenance
GO:0006839; mitochondrial transport
GO:0006864; pyrimidine nucleotide transport" ; gene "SPAC688.09" ; product "mitochondrial pyrimidine nucletide transporter (predicted)" ;
chromosome1 GeneDB CDS 3127647 3127813 . + . mRNA SPAC688.09 ; colour "7" ;
chromosome1 GeneDB CDS 3127862 3128780 . + . mRNA SPAC688.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 3127814 3127819 . + . misc_feature unknown_2633 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3127848 3127861 . + . misc_feature unknown_2634 ; colour "6" ; note "ctaatattctttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3128781 3129351 . + . mRNA SPAC688.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC688.09" ; systematic_id "SPAC688.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3129787 3129877 . + . mRNA SPAC688.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC688.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3129878 3134320 . + . mRNA SPAC688.10 ; systematic_id "SPAC688.10" ; colour "7" ; gene "rev3 ||| SPAC688.10" ; Alias "rev3" ; db_xref "SPD:30/30H03" ; GO "GO:0003887; DNA-directed DNA polymerase activity
GO:0006281; DNA repair
GO:0016035; zeta DNA polymerase complex
GO:0005739; mitochondrion
GO:0043596; nuclear replication fork
GO:0043504; mitochondrial DNA repair
GO:0070987; error-free translesion synthesis
GO:0042276; error-prone translesion synthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL167C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human REV3L ortholog; date=20100909" ; primary_name "rev3" ; product "DNA polymerase zeta catalytic subunit Rev3 (predicted)" ;
chromosome1 GeneDB CDS 3129878 3134320 . + . mRNA SPAC688.10 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3134321 3134469 . + . mRNA SPAC688.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC688.10" ; systematic_id "SPAC688.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 3134575 3134919 . + . LTR unknown_2635 ; note "Tf1-type LTR" ;
chromosome1 GeneDB 5'-UTR 3135015 3135124 . + . mRNA SPAC688.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC688.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact ||| refined to match gene structure in PMID:21270388" ;
chromosome1 GeneDB CDS_parts 3135125 3138433 . + . mRNA SPAC688.11 ; systematic_id "SPAC688.11" ; colour "2" ; gene "end4 ||| SPAC688.11 ||| sla2" ; Alias "end4" ; db_xref "SPD:30/30C09" ; synonym "sla2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization dependent on vesicular traffic; date=20060207 ||| term=localization dependent on Tea1; date=20060207 ||| term=ENTH/VHS domain protein; cv=protein_family; date=20061127 ||| term=orthologous to S. cerevisiae YNL243W; date=19700101 ||| term=target of Ark1/Prk1 family kinases; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human HIP1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; GO "GO:0030479; actin cortical patch
GO:0051285; cell cortex of cell tip
GO:0032153; cell division site
GO:0032153; cell division site
GO:0003779; actin binding
GO:0005546; phosphatidylinositol-4,5-bisphosphate binding
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0034613; cellular protein localization
GO:0030866; cortical actin cytoskeleton organization and biogenesis
GO:0006897; endocytosis
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0031580; membrane raft distribution
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0070314; G1 to G0 transition" ; primary_name "end4" ; product "Huntingtin-interacting protein homolog" ;
chromosome1 GeneDB CDS 3135125 3138433 . + . mRNA SPAC688.11 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3138434 3138590 . + . mRNA SPAC688.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC688.11" ; systematic_id "SPAC688.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3138722 3139225 . - . mRNA SPAC688.12c ; db_xref "SPD:04/04H10" ; systematic_id "SPAC688.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC688.12c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3138722 3139225 . - . mRNA SPAC688.12c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 3139224 3139300 . - . mRNA SPAC688.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC688.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3139724 3140731 . + . mRNA SPAC688.13 ; systematic_id "SPAC688.13" ; colour "2" ; gene "scn1 ||| SPAC688.13" ; Alias "scn1" ; db_xref "SPD:40/40C02" ; GO "GO:0030071; regulation of mitotic metaphase/anaphase transition" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR262W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "scn1" ; product "TatD DNase family Scn1" ;
chromosome1 GeneDB CDS 3139724 3140731 . + . mRNA SPAC688.13 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3140732 3140954 . + . mRNA SPAC688.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC688.13" ; systematic_id "SPAC688.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3141443 3141483 . + . mRNA SPAC688.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC688.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3141484 3143034 . + . mRNA SPAC688.14 ; systematic_id "SPAC688.14" ; colour "2" ; gene "SPAC688.14" ; Alias "set13" ; db_xref "SPD:25/25B03" ; GO "GO:0016279; protein-lysine N-methyltransferase activity
GO:0005634; nucleus
GO:0006479; protein amino acid methylation
GO:0043555; regulation of translation in response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YDR257C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Rpl42; qualifier=methylates; evidence=IDA; db_xref=PMID:20444689; date=20100628" ; primary_name "set13" ; product "ribosome L32 lysine methyltransferase Set13" ;
chromosome1 GeneDB CDS 3141484 3141603 . + . mRNA SPAC688.14 ; colour "2" ;
chromosome1 GeneDB CDS 3141652 3142329 . + . mRNA SPAC688.14 ; colour "2" ;
chromosome1 GeneDB CDS 3142396 3142667 . + . mRNA SPAC688.14 ; colour "2" ;
chromosome1 GeneDB CDS 3142719 3143034 . + . mRNA SPAC688.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 3141604 3141609 . + . misc_feature unknown_2636 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3141636 3141651 . + . misc_feature unknown_2637 ; colour "6" ; note "ctaacaatacttgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3142330 3142335 . + . misc_feature unknown_2638 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3142381 3142395 . + . misc_feature unknown_2639 ; colour "6" ; note "ctaactatgctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3142668 3142673 . + . misc_feature unknown_2640 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3142705 3142718 . + . misc_feature unknown_2641 ; colour "6" ; note "ctaacgttttctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3143035 3143101 . + . mRNA SPAC688.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC688.14" ; systematic_id "SPAC688.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3143922 3144329 . + . mRNA SPAC688.16 ; db_xref "PMID:18488015" ; systematic_id "SPAC688.16" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "8" ; gene "SPAC688.16" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3143922 3144046 . + . mRNA SPAC688.16 ; colour "8" ;
chromosome1 GeneDB CDS 3144125 3144329 . + . mRNA SPAC688.16 ; colour "8" ;
chromosome1 GeneDB CDS_parts 3145214 3145728 . + . mRNA SPAC3G9.16c ; systematic_id "SPAC3G9.16c" ; colour "7" ; gene "bet5 ||| SPAC688.15 ||| SPAC3G9.16c" ; Alias "bet5" ; db_xref "SPD:05/05A10" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030008; TRAPP complex
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML077W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bet5" ; product "TRAPP complex subunit Bet5 (predicted)" ;
chromosome1 GeneDB CDS 3145214 3145250 . + . mRNA SPAC3G9.16c ; colour "7" ;
chromosome1 GeneDB CDS 3145298 3145728 . + . mRNA SPAC3G9.16c ; colour "7" ;
chromosome1 GeneDB misc_feature 3145251 3145256 . + . misc_feature unknown_2642 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3145283 3145297 . + . misc_feature unknown_2643 ; colour "6" ; note "ctaacaaaaatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3145462 3146054 . + . misc_feature unknown_2644 ; note "nominal overlap with cosmid SPAC3G9 and SPAC688" ;
chromosome1 GeneDB CDS_parts 3145867 3146559 . + . mRNA SPAC3G9.15c ; systematic_id "SPAC3G9.15c" ; colour "7" ; gene "fcf2 ||| SPAC3G9.15c" ; Alias "fcf2" ; db_xref "SPD:08/08A09" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fcf2" ; product "rRNA processing protein Fcf2 (predicted)" ;
chromosome1 GeneDB CDS 3145867 3146559 . + . mRNA SPAC3G9.15c ; colour "7" ;
chromosome1 GeneDB misc_feature 3145867 3146050 . + . misc_feature unknown_2645 ; note "see SPAC3G9.15c" ;
chromosome1 GeneDB 3'-UTR 3146948 3147206 . - . mRNA SPAC3G9.14 ; Alias "sak1" ; ID "SPAC3G9.14" ; db_xref "SPD:40/40H07" ; systematic_id "SPAC3G9.14" ; primary_name "sak1" ; gene "sak1 ||| SPAC3G9.14" ; note "mRNA from AU007729" ;
chromosome1 GeneDB CDS_parts 3147207 3149507 . - . mRNA SPAC3G9.14 ; systematic_id "SPAC3G9.14" ; colour "2" ; gene "sak1 ||| SPAC3G9.14" ; Alias "sak1" ; db_xref "SPD:40/40H07" ; GO "GO:0000790; nuclear chromatin
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0016566; specific transcriptional repressor activity
GO:0031536; positive regulation of exit from mitosis
GO:0007346; regulation of progression through mitotic cell cycle
GO:0010553; negative regulation of gene specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YLR176C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:7862141; date=20100708" ; primary_name "sak1" ; product "transcriptional repressor Sak1" ;
chromosome1 GeneDB CDS 3147207 3149507 . - . mRNA SPAC3G9.14 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3149506 3150418 . - . mRNA SPAC3G9.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G9.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 3149910 3150625 . + . misc_RNA SPNCRNA.216 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.216" ; synonym "SPNG589" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 3150693 3151325 . + . mRNA SPAC3G9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3151326 3152782 . + . mRNA SPAC3G9.13c ; systematic_id "SPAC3G9.13c" ; colour "7" ; gene "msw1 ||| SPAC3G9.13c" ; Alias "msw1" ; db_xref "KEGG:MAP00380; ||| KEGG:MAP00970; ||| SPD:23/23E04" ; GO "GO:0006436; tryptophanyl-tRNA aminoacylation
GO:0004830; tryptophan-tRNA ligase activity
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0042803; protein homodimerization activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR268W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "msw1" ; product "mitochondrial tryptophan-tRNA ligase Msw1 (predicted)" ; EC_number "6.1.1.2" ;
chromosome1 GeneDB CDS 3151326 3151625 . + . mRNA SPAC3G9.13c ; colour "7" ;
chromosome1 GeneDB CDS 3151789 3151869 . + . mRNA SPAC3G9.13c ; colour "7" ;
chromosome1 GeneDB CDS 3151952 3152079 . + . mRNA SPAC3G9.13c ; colour "7" ;
chromosome1 GeneDB CDS 3152134 3152255 . + . mRNA SPAC3G9.13c ; colour "7" ;
chromosome1 GeneDB CDS 3152328 3152782 . + . mRNA SPAC3G9.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 3151626 3151631 . + . misc_feature unknown_2646 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3151776 3151788 . + . misc_feature unknown_2647 ; colour "6" ; note "ctaattattcaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3151870 3151875 . + . misc_feature unknown_2648 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3151937 3151951 . + . misc_feature unknown_2649 ; colour "6" ; note "ctaacgaattataag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3152080 3152085 . + . misc_feature unknown_2650 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3152121 3152778 . - . mRNA SPAC3G9.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G9.12" ; systematic_id "SPAC3G9.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3152122 3152133 . + . misc_feature unknown_2651 ; colour "6" ; note "ctaattttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3152256 3152261 . + . misc_feature unknown_2652 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3152309 3152327 . + . misc_feature unknown_2653 ; colour "6" ; note "ctaacaaaacaccatatag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 3152779 3157288 . - . mRNA SPAC3G9.12 ; systematic_id "SPAC3G9.12" ; colour "2" ; gene "peg1 ||| SPAC3G9.12 ||| cls1" ; Alias "peg1" ; db_xref "SPD:30/30H09" ; synonym "cls1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, plus end tracking protein; cv=m_f_g; date=20060411 ||| term=HEAT repeat; date=20060411 ||| term=orthologous to S. cerevisiae YBL034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005875; microtubule associated complex
GO:0005876; spindle microtubule
GO:0051233; spindle midzone
GO:0005515; protein binding
GO:0005515; protein binding
GO:0007020; microtubule nucleation
GO:0090307; spindle assembly involved in mitosis
GO:0032932; negative regulation of astral microtubule depolymerization
GO:0032932; negative regulation of astral microtubule depolymerization
GO:0032932; negative regulation of astral microtubule depolymerization
GO:0032932; negative regulation of astral microtubule depolymerization
GO:0032932; negative regulation of astral microtubule depolymerization
GO:0007026; negative regulation of microtubule depolymerization" ; primary_name "peg1" ; product "CLASP family microtubule-associated protein" ;
chromosome1 GeneDB CDS 3152779 3157050 . - . mRNA SPAC3G9.12 ; colour "2" ;
chromosome1 GeneDB CDS 3157130 3157197 . - . mRNA SPAC3G9.12 ; colour "2" ;
chromosome1 GeneDB CDS 3157240 3157288 . - . mRNA SPAC3G9.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3152783 3152830 . + . mRNA SPAC3G9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G9.13c" ; systematic_id "SPAC3G9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 3157430 3157501 . + . tRNA SPATRNAALA.03 ; systematic_id "SPATRNAALA.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033408; TCG codon-amino acid adaptor activity" ; gene "SPATRNAALA.03" ; product "tRNA Alanine" ; note "tRNA Ala anticodon TGC, Cove score 68.49" ;
chromosome1 GeneDB misc_RNA 3158482 3159120 . + . misc_RNA SPNCRNA.217 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.217" ; synonym "SPNG593" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 3160230 3161942 . + . mRNA SPAC3G9.11c ; db_xref "SPD:45/45F02" ; systematic_id "SPAC3G9.11c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR087C and YLR134W and YLR044C and YDL080C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009063; amino acid catabolic process
GO:0006091; generation of precursor metabolites and energy" ; gene "SPAC3G9.11c" ; product "pyruvate decarboxylase (predicted)" ; EC_number "4.1.1.1" ;
chromosome1 GeneDB CDS 3160230 3161942 . + . mRNA SPAC3G9.11c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3162172 3162318 . - . mRNA SPAC3G9.17 ; db_xref "PMID:21270388" ; systematic_id "SPAC3G9.17" ;
chromosome1 GeneDB CDS_parts 3162319 3162854 . - . mRNA SPAC3G9.17 ; Alias "new8" ; systematic_id "SPAC3G9.17" ; GO "GO:0008897; holo-[acyl-carrier-protein] synthase activy
GO:0018070; peptidyl-serine phosphopantetheinylation" ; controlled_curation "term=conserved in Fungi; date=20090721 ||| term=no apparent S. cerevisiae ortholog; date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=phenotype, growth defect, slow growth; qualifier=deletion; db_xref=PMID:21270388; date=20110131" ; colour "7" ; primary_name "new8" ; product "holo-[acyl-carrier-protein] synthase (predicted)" ; note "absence from S. cerevisiae and involvement in phosphopantotheonine attachment suggest a role in siderophore /ferrichrome biosynthesis in the same pathway as sib1 and sib2, alternatively YPL148C (PPT2) could be the S. cerevisiae ortholog (this is the only S. cerevisiae ACPS domain protein without a pombe ortholog)" ;
chromosome1 GeneDB CDS 3162319 3162443 . - . mRNA SPAC3G9.17 ; colour "7" ;
chromosome1 GeneDB CDS 3162523 3162611 . - . mRNA SPAC3G9.17 ; colour "7" ;
chromosome1 GeneDB CDS 3162670 3162854 . - . mRNA SPAC3G9.17 ; colour "7" ;
chromosome1 GeneDB intron 3162444 3162522 . - . intron unknown_2654 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome1 GeneDB intron 3162612 3162669 . - . intron unknown_2655 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome1 GeneDB 5'-UTR 3162855 3163101 . - . mRNA SPAC3G9.17 ; db_xref "PMID:21270388" ; systematic_id "SPAC3G9.17" ;
chromosome1 GeneDB 5'-UTR 3163136 3163220 . + . mRNA SPAC3G9.10c ; Alias "ski6" ; ID "SPAC3G9.10c" ; systematic_id "SPAC3G9.10c" ; primary_name "ski6" ; gene "ski6 ||| SPAC3G9.10c" ; note "mRNA from SPD141 88 1" ;
chromosome1 GeneDB CDS_parts 3163221 3164108 . + . mRNA SPAC3G9.10c ; systematic_id "SPAC3G9.10c" ; colour "7" ; gene "ski6 ||| SPAC3G9.10c" ; Alias "ski6" ; db_xref "SPD:12/12A06" ; GO "GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0000175; 3'-5'-exoribonuclease activity
GO:0006364; 35S primary transcript processing
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR195W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "ski6" ; product "exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted)" ;
chromosome1 GeneDB CDS 3163221 3163223 . + . mRNA SPAC3G9.10c ; colour "7" ;
chromosome1 GeneDB CDS 3163272 3163311 . + . mRNA SPAC3G9.10c ; colour "7" ;
chromosome1 GeneDB CDS 3163423 3164108 . + . mRNA SPAC3G9.10c ; colour "7" ;
chromosome1 GeneDB misc_feature 3163224 3163229 . + . misc_feature unknown_2656 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 3163224 3163271 . + . intron SPAC3G9.10c ; Alias "ski6" ; db_xref "SPD:12/12A06" ; systematic_id "SPAC3G9.10c" ; primary_name "ski6" ; gene "ski6 ||| SPAC3G9.10c" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 3163260 3163271 . + . misc_feature unknown_2657 ; colour "6" ; note "ctaaccatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3163312 3163317 . + . misc_feature unknown_2658 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB intron 3163312 3163422 . + . intron SPAC3G9.10c ; Alias "ski6" ; db_xref "SPD:12/12A06" ; systematic_id "SPAC3G9.10c" ; primary_name "ski6" ; gene "ski6 ||| SPAC3G9.10c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3163406 3163422 . + . misc_feature unknown_2659 ; colour "6" ; note "ctaatatttgttgcaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3164109 3164354 . + . mRNA SPAC3G9.10c ; Alias "ski6" ; ID "SPAC3G9.10c" ; db_xref "SPD:12/12A06" ; systematic_id "SPAC3G9.10c" ; primary_name "ski6" ; gene "ski6 ||| SPAC3G9.10c" ; note "mRNA from SPD141" ;
chromosome1 GeneDB tRNA 3164749 3164820 . + . tRNA SPATRNATHR.04 ; systematic_id "SPATRNATHR.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033429; CGT codon-amino acid adaptor activity" ; gene "SPATRNATHR.04" ; product "tRNA Threonine" ; note "tRNA Thr anticodon CGT, Cove score 76.00" ;
chromosome1 GeneDB rRNA 3165354 3165546 . + . rRNA SPRRNA.14 ; systematic_id "SPRRNA.14" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.14" ; product "5S rRNA" ;
chromosome1 GeneDB misc_RNA 3165556 3166062 . + . misc_RNA SPNCRNA.218 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.218" ; synonym "SPNG596" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 3166419 3166455 . + . mRNA SPAC3G9.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G9.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3166456 3167544 . + . mRNA SPAC3G9.09c ; gene_synonym "eIF2alpha" ; systematic_id "SPAC3G9.09c" ; colour "2" ; gene "tif211 ||| SPAC3G9.09c" ; Alias "tif211" ; db_xref "SPD:17/17A04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, protein synthesis after stress, defective; allele=non-phosphorylatable on Ser52; db_xref=PMID:19033384; cv=phenotype; date=20091204 ||| term=orthologous to S. cerevisiae YJR007W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=target of Gcn2; qualifier=during_stress; residue=ser52; db_xref=PMID:19033384; date=20091204 ||| term=target of Hri1; db_xref=PMID:12242291; date=20091204 ||| term=target of Hri2; db_xref=PMID:12242291; date=20091204 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:12242291; date=20090213" ; GO "GO:0005850; eukaryotic translation initiation factor 2 complex
GO:0003743; translation initiation factor activity
GO:0043561; regulation of translational initiation in response to osmotic stress
GO:0031575; G1/S transition checkpoint" ; primary_name "tif211" ; product "translation initiation factor eIF2 alpha subunit" ;
chromosome1 GeneDB CDS 3166456 3166525 . + . mRNA SPAC3G9.09c ; colour "2" ;
chromosome1 GeneDB CDS 3166588 3166758 . + . mRNA SPAC3G9.09c ; colour "2" ;
chromosome1 GeneDB CDS 3166865 3167544 . + . mRNA SPAC3G9.09c ; colour "2" ;
chromosome1 GeneDB misc_feature 3166526 3166531 . + . misc_feature unknown_2660 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3166526 3166587 . + . intron SPAC3G9.09c ; Alias "tif211" ; db_xref "SPD:17/17A04" ; systematic_id "SPAC3G9.09c" ; primary_name "tif211" ; gene "tif211 ||| SPAC3G9.09c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3166572 3166587 . + . misc_feature unknown_2661 ; colour "6" ; note "ctaatatttccaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3166759 3166764 . + . misc_feature unknown_2662 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 3166759 3166864 . + . intron SPAC3G9.09c ; Alias "tif211" ; db_xref "SPD:17/17A04" ; systematic_id "SPAC3G9.09c" ; primary_name "tif211" ; gene "tif211 ||| SPAC3G9.09c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3166850 3166864 . + . misc_feature unknown_2663 ; colour "6" ; note "ctaaccaggattaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3167545 3167699 . + . mRNA SPAC3G9.09c ; Alias "tif211" ; ID "SPAC3G9.09c" ; db_xref "SPD:17/17A04" ; systematic_id "SPAC3G9.09c" ; primary_name "tif211" ; gene "tif211 ||| SPAC3G9.09c" ; note "mRNA from AU008592" ;
chromosome1 GeneDB CDS_parts 3168191 3169042 . - . mRNA SPAC3G9.08 ; systematic_id "SPAC3G9.08" ; colour "2" ; gene "png1 ||| SPAC3G9.08" ; db_xref "SPD:11/11B09" ; Alias "png1" ; GO "GO:0035267; NuA4 histone acetyltransferase complex
GO:0035064; methylated histone residue binding
GO:0019787; small conjugating protein ligase activity
GO:0006281; DNA repair
GO:0005634; nucleus
GO:0090239; regulation of histone H4 acetylation
GO: SFNEW; regulation of histone H4 acetylation in reponse to DNA damage
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0045739; positive regulation of DNA repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YHR090C and YNL097C and YOR064C; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:10805724; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pombe iNhibitor of Growth; db_xref=PMID:20299455; cv=name_description; date=20100624 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20299455; date=20100624" ; primary_name "png1" ; product "ING family homolog Png1" ;
chromosome1 GeneDB CDS 3168191 3169042 . - . mRNA SPAC3G9.08 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3169041 3169332 . - . mRNA SPAC3G9.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G9.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3169663 3170109 . + . mRNA SPAC3G9.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G9.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3170110 3171414 . + . mRNA SPAC3G9.07c ; systematic_id "SPAC3G9.07c" ; colour "2" ; gene "hos2 ||| hda1 ||| SPAC3G9.07c ||| phd1" ; Alias "hos2" ; db_xref "SPD:22/22F12" ; synonym "hda1 ||| phd1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL194C; date=19700101 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16079916; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0034967; Set3 complex
GO:0034739; histone deacetylase activity (H3-K16 specific)
GO:0004407; histone deacetylase activity
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0016575; histone deacetylation
GO:0060303; regulation of nucleosome density
GO:0006357; regulation of transcription from polymerase II promoter
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling
GO:0006338; chromatin remodeling" ; primary_name "hos2" ; product "histone deacetylase (class I) Hos2" ;
chromosome1 GeneDB CDS 3170110 3171414 . + . mRNA SPAC3G9.07c ; colour "2" ;
chromosome1 GeneDB CDS_parts 3171584 3173345 . - . mRNA SPAC3G9.06 ; systematic_id "SPAC3G9.06" ; colour "7" ; gene "frs2 ||| SPAC3G9.06" ; Alias "frs2" ; db_xref "KEGG:MAP00400; ||| KEGG:MAP00970; ||| SPD:36/36B07" ; GO "GO:0006432; phenylalanyl-tRNA aminoacylation
GO:0004826; phenylalanine-tRNA ligase activity
GO:0005737; cytoplasm
GO:0009328; phenylalanine-tRNA ligase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "frs2" ; product "cytoplasmic phenylalanine-tRNA ligase alpha subunit Frs2 (predicted)" ; EC_number "6.1.1.20" ;
chromosome1 GeneDB CDS 3171584 3172699 . - . mRNA SPAC3G9.06 ; colour "7" ;
chromosome1 GeneDB CDS 3172768 3172857 . - . mRNA SPAC3G9.06 ; colour "7" ;
chromosome1 GeneDB CDS 3173052 3173345 . - . mRNA SPAC3G9.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 3172700 3172711 . - . misc_feature unknown_2664 ; colour "6" ; note "ctaactgaccag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3172762 3172767 . - . misc_feature unknown_2665 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3172858 3172870 . - . misc_feature unknown_2666 ; colour "6" ; note "ctaactgatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3173046 3173051 . - . misc_feature unknown_2667 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3173734 3173945 . - . mRNA SPAC3G9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G9.05" ; systematic_id "SPAC3G9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3173946 3176059 . - . mRNA SPAC3G9.05 ; db_xref "SPD:28/28A01" ; systematic_id "SPAC3G9.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YLL021W and YLR313C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0030427; site of polarized growth
GO:0005519; cytoskeletal regulatory protein binding
GO:0007266; Rho protein signal transduction
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0030010; establishment of cell polarity (sensu Fungi)
GO:0007015; actin filament organization" ; gene "SPAC3G9.05" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB CDS 3173946 3175729 . - . mRNA SPAC3G9.05 ; colour "7" ;
chromosome1 GeneDB CDS 3175778 3175906 . - . mRNA SPAC3G9.05 ; colour "7" ;
chromosome1 GeneDB CDS 3175993 3176059 . - . mRNA SPAC3G9.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 3175730 3175743 . - . misc_feature unknown_2668 ; colour "6" ; note "ctaaccccttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3175772 3175777 . - . misc_feature unknown_2669 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3175907 3175923 . - . misc_feature unknown_2670 ; colour "6" ; note "ctaacgctattttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3175987 3175992 . - . misc_feature unknown_2671 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3176058 3176316 . - . mRNA SPAC3G9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3176488 3177130 . - . mRNA SPAC3G9.04 ; systematic_id "SPAC3G9.04" ; colour "2" ; gene "ssu72 ||| SPAC3G9.04" ; Alias "ssu72" ; db_xref "SPD:07/07D04" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0006369; termination of RNA polymerase II transcription
GO:0006352; transcription initiation
GO:0042578; phosphoric ester hydrolase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL222W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ssu72" ; product "phosphoric ester hydrolase Ssu72 (predicted)" ; EC_number "3.1.-.-" ;
chromosome1 GeneDB CDS 3176488 3176998 . - . mRNA SPAC3G9.04 ; colour "2" ;
chromosome1 GeneDB CDS 3177048 3177130 . - . mRNA SPAC3G9.04 ; colour "2" ;
chromosome1 GeneDB misc_feature 3176999 3177014 . - . misc_feature unknown_2672 ; colour "6" ; note "ctaatctccattgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3177042 3177047 . - . misc_feature unknown_2673 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3177131 3177452 . - . mRNA SPAC3G9.04 ; Alias "ssu72" ; ID "SPAC3G9.04" ; systematic_id "SPAC3G9.04" ; primary_name "ssu72" ; gene "ssu72 ||| SPAC3G9.04" ; note "mRNA from AU012020 177 15" ;
chromosome1 GeneDB misc_RNA 3177948 3178309 . - . misc_RNA SPNCRNA.87 ; systematic_id "SPNCRNA.87" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.87" ; product "non-coding RNA (predicted)" ; note "possibly spurious, expression low on both strands (pers comm. Jurg Bahler)" ;
chromosome1 GeneDB misc_RNA 3178807 3179222 . + . misc_RNA SPNCRNA.219 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.219" ; synonym "SPNG598" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 3179343 3179461 . - . mRNA SPAC3G9.03 ; Alias "rpl2301" ; ID "SPAC3G9.03" ; db_xref "SPD:31/31E06" ; systematic_id "SPAC3G9.03" ; primary_name "rpl2301" ; gene "rpl2301 ||| rpl23-1 ||| SPAC3G9.03" ; note "mRNA from AU009010 293 10" ;
chromosome1 GeneDB CDS_parts 3179462 3179992 . - . mRNA SPAC3G9.03 ; systematic_id "SPAC3G9.03" ; colour "2" ; gene "rpl2301 ||| rpl23-1 ||| SPAC3G9.03" ; Alias "rpl2301" ; db_xref "SPD:31/31E06" ; synonym "rpl23-1" ; controlled_curation "term=orthologous to S. cerevisiae YBL087C and YER117W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl2301" ; product "60S ribosomal protein L23" ;
chromosome1 GeneDB CDS 3179462 3179709 . - . mRNA SPAC3G9.03 ; colour "2" ;
chromosome1 GeneDB CDS 3179821 3179992 . - . mRNA SPAC3G9.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 3179710 3179721 . - . misc_feature unknown_2674 ; colour "6" ; note "ctgaccttgtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3179710 3179820 . - . intron SPAC3G9.03 ; Alias "rpl2301" ; db_xref "SPD:31/31E06" ; systematic_id "SPAC3G9.03" ; primary_name "rpl2301" ; gene "rpl2301 ||| rpl23-1 ||| SPAC3G9.03" ; note "intron confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 3179815 3179820 . - . misc_feature unknown_2675 ; colour "6" ; note "ggtatg, splice donor sequence" ;
chromosome1 GeneDB promoter 3180041 3180048 . - . promoter unknown_2676 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB CDS_parts 3180426 3181136 . - . mRNA SPAC3G9.02 ; systematic_id "SPAC3G9.02" ; colour "7" ; gene "oar2 ||| SPAC3G9.02" ; Alias "oar2" ; db_xref "SPD:08/08D08" ; GO "GO:0005739; mitochondrion
GO:0004316; 3-oxoacyl-[acyl-carrier-protein] reductase activity
GO:0006633; fatty acid biosynthesis
GO:0009105; lipoic acid biosynthetic process
GO:0009060; aerobic respiration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "oar2" ; product "3-oxoacyl-[acyl-carrier-protein] reductase Oar2 (predicted)" ; EC_number "1.1.1.100" ;
chromosome1 GeneDB CDS 3180426 3181136 . - . mRNA SPAC3G9.02 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3181135 3181164 . - . mRNA SPAC3G9.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G9.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3181542 3181638 . - . mRNA SPAC3G9.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G9.01" ; systematic_id "SPAC3G9.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3181639 3183027 . - . mRNA SPAC3G9.01 ; systematic_id "SPAC3G9.01" ; colour "8" ; gene "SPAC3G9.01 ||| nsk1" ; db_xref "SPD:44/44D09" ; Alias "nsk1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=species distribution, sequence orphan; date=20090303" ; primary_name "nsk1" ; product "Clp1-interacting protein Nsk1" ; reserved_name "nsk1" ;
chromosome1 GeneDB CDS 3181639 3183027 . - . mRNA SPAC3G9.01 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 3183028 3183290 . - . mRNA SPAC3G9.01 ; ID "SPAC3G9.01" ; systematic_id "SPAC3G9.01" ; gene "SPAC3G9.01 ||| nsk1" ; note "mRNA from AU007219" ;
chromosome1 GeneDB misc_feature 3183456 3183557 . + . misc_feature unknown_2677 ; note "nominal overlap with cosmid SPAC1486, EM:AL133357 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 3183456 3183557 . - . misc_feature unknown_2678 ; note "nominal overlap with cosmid SPAC3G9, EM:AL021046 S. pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 3185470 3186249 . + . mRNA SPAC1486.01 ; systematic_id "SPAC1486.01" ; colour "7" ; gene "SPAC1486.01" ; obsolete_name "sod2" ; db_xref "SPD:09/09G05" ; GO "GO:0005759; mitochondrial matrix
GO:0030145; manganese ion binding
GO:0004784; superoxide dismutase activity
GO:0034614; cellular response to reactive oxygen species
GO:0006801; superoxide metabolism
GO:0001320; age-dependent response to reactive oxygen species during chronological cell aging" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR008C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; product "manganese superoxide dismutase (predicted)" ; EC_number "1.15.1.1" ;
chromosome1 GeneDB CDS 3185470 3185577 . + . mRNA SPAC1486.01 ; colour "7" ;
chromosome1 GeneDB CDS 3185701 3186249 . + . mRNA SPAC1486.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 3185578 3185583 . + . misc_feature unknown_2679 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3185685 3185700 . + . misc_feature unknown_2680 ; colour "6" ; note "ctaactatagctttag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 3186754 3188067 . - . mRNA SPAC1486.02c ; systematic_id "SPAC1486.02c" ; colour "10" ; gene "ucp14 ||| SPAC1486.02c" ; Alias "dsc2" ; db_xref "SPD:44/44C03" ; synonym "ucp14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOL073C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human UBAC2 ortholog; date=20100718" ; primary_name "dsc2" ; product "UBA domain protein Ucp14" ; reserved_name "dsc2" ;
chromosome1 GeneDB CDS 3186754 3187722 . - . mRNA SPAC1486.02c ; colour "10" ;
chromosome1 GeneDB CDS 3187811 3187941 . - . mRNA SPAC1486.02c ; colour "10" ;
chromosome1 GeneDB CDS 3188049 3188067 . - . mRNA SPAC1486.02c ; colour "10" ;
chromosome1 GeneDB misc_feature 3187723 3187735 . - . misc_feature unknown_2681 ; colour "6" ; note "ctaacccaaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3187805 3187810 . - . misc_feature unknown_2682 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3187942 3187961 . - . misc_feature unknown_2683 ; colour "6" ; note "ctaacttacaaaacgtatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3188043 3188048 . - . misc_feature unknown_2684 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3188066 3188086 . - . mRNA SPAC1486.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1486.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3188360 3188397 . - . mRNA SPAC1486.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1486.03c" ; systematic_id "SPAC1486.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3188398 3190791 . - . mRNA SPAC1486.03c ; db_xref "SPD:28/28E11" ; systematic_id "SPAC1486.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR424w; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "7" ; GO "GO:0000390; spliceosome disassembly
GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spiceosome" ; gene "SPAC1486.03c" ; product "RNA-binding splicing factor (predicted)" ;
chromosome1 GeneDB CDS 3188398 3190791 . - . mRNA SPAC1486.03c ; colour "7" ;
chromosome1 GeneDB misc_RNA 3190456 3191217 . + . misc_RNA SPNCRNA.14 ; systematic_id "SPNCRNA.14" ; gene "prl14 ||| SPNCRNA.14" ; note "antisense" ; db_xref "PMID:12597277 ||| EMBL:AB084826" ; Alias "prl14" ; controlled_curation "term=; qualifier=predicted; db_xref=PMID:12597277; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl14" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB LTR 3190954 3191311 . + . LTR unknown_2685 ; note "TF1 LTR" ;
chromosome1 GeneDB 3'-UTR 3191447 3191531 . - . mRNA SPAC1486.04c ; Alias "alm1" ; ID "SPAC1486.04c" ; db_xref "SPD:34/34B07" ; systematic_id "SPAC1486.04c" ; primary_name "alm1" ; gene "alm1 ||| SPAC1486.04c" ; note "mRNA from AF010473" ;
chromosome1 GeneDB CDS_parts 3191532 3196715 . - . mRNA SPAC1486.04c ; systematic_id "SPAC1486.04c" ; colour "2" ; gene "alm1 ||| SPAC1486.04c" ; Alias "alm1" ; db_xref "SPD:34/34B07" ; GO "GO:0032153; cell division site
GO:0031097; medial ring
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:10660053; qualifier=deletion; cv=phenotype; date=20060222 ||| term=phenotype, sporulation defects; db_xref=PMID:10660053; qualifier=deletion; cv=phenotype; date=20060222 ||| term=phenotype, spores produced smaller colonies; db_xref=PMID:10660053; qualifier=deletion; cv=phenotype; date=20060222 ||| term=protein sequence feature, coiled-coil; db_xref=PMID:10660053; date=20060222 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10660053; date=20060222 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "alm1" ; product "medial ring protein Alm1" ;
chromosome1 GeneDB CDS 3191532 3196715 . - . mRNA SPAC1486.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3196714 3196838 . - . mRNA SPAC1486.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1486.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3196998 3197027 . + . mRNA SPAC1486.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1486.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3197028 3202450 . + . mRNA SPAC1486.05 ; systematic_id "SPAC1486.05" ; colour "2" ; gene "SPAC1486.05 ||| nup189" ; Alias "nup189" ; db_xref "SPD:48/48H04" ; GO "GO:0031080; Nup107-160 complex
; nuclear membrane
GO:0005643; nuclear pore
GO:0008233; peptidase activity
GO:0005515; protein binding
GO:0051301; cell division
GO:0006997; nuclear organization and biogenesis
GO:0006913; nucleocytoplasmic transport
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=FG repeat; date=19700101 ||| term=orthologous to S. cerevisiae YGL092W and YKL068W and YMR047C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human NUP98 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "nup189" ; product "nucleoporin Nup189" ;
chromosome1 GeneDB CDS 3197028 3197443 . + . mRNA SPAC1486.05 ; colour "2" ;
chromosome1 GeneDB CDS 3197530 3202450 . + . mRNA SPAC1486.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 3197444 3197449 . + . misc_feature unknown_2686 ; colour "6" ; note "gttcgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3197500 3197529 . + . misc_feature unknown_2687 ; colour "6" ; note "ataacgctggcaatactgctggaaatacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3202451 3202485 . + . mRNA SPAC1486.05 ; Alias "nup189" ; ID "SPAC1486.05" ; db_xref "EMBL:D89145 ||| SPD:48/48H04" ; systematic_id "SPAC1486.05" ; gene "SPAC1486.05 ||| nup189" ; primary_name "nup189" ;
chromosome1 GeneDB 5'-UTR 3202704 3202779 . + . mRNA SPAC1486.11 ; db_xref "PMID:21270388" ; systematic_id "SPAC1486.11" ;
chromosome1 GeneDB CDS_parts 3202780 3203137 . + . mRNA SPAC1486.11 ; systematic_id "SPAC1486.11" ; colour "7" ; gene "SPAC1486.11" ; note "clearly expressed during vegetative growth" ; Alias "fmc1" ; synonym "new3" ; controlled_curation "term=ortholoogous to S. cerevisiae YIL098C; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=conserved in Eukaryotes; date=20090721 ||| term=conserved in Metazoa; date=20090721 ||| term=conserved in Vertebrates; date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; GO "GO:0005759; mitochondrial matrix
GO:0033615; mitochondrial proton-transporting ATP synthase complex assembly" ; primary_name "fmc1" ; product "mitochondrial matrix protein, F1F0 ATP synthase assembly factor Fmc1 (predicted)" ;
chromosome1 GeneDB CDS 3202780 3202833 . + . mRNA SPAC1486.11 ; colour "7" ;
chromosome1 GeneDB CDS 3202877 3203137 . + . mRNA SPAC1486.11 ; colour "7" ;
chromosome1 GeneDB intron 3202834 3202876 . + . intron unknown_2688 ; db_xref "PMID:21270388" ;
chromosome1 GeneDB 3'-UTR 3203138 3203656 . + . mRNA SPAC1486.11 ; db_xref "PMID:21270388" ; systematic_id "SPAC1486.11" ;
chromosome1 GeneDB 5'-UTR 3204094 3204360 . + . mRNA SPAC1486.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1486.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3204361 3205593 . + . mRNA SPAC1486.06 ; db_xref "SPD:19/19F05" ; systematic_id "SPAC1486.06" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004516; nicotinate phosphoribosyltransferase activity
GO:0019358; nicotinate nucleotide salvage
GO:0005634; nucleus" ; gene "SPAC1486.06" ; product "nicotinate phosphoribosyltransferase (predicted)" ; EC_number "2.4.2.11" ;
chromosome1 GeneDB CDS 3204361 3205593 . + . mRNA SPAC1486.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3205594 3205821 . + . mRNA SPAC1486.06 ; ID "SPAC1486.06" ; db_xref "SPD:19/19F05" ; systematic_id "SPAC1486.06" ; gene "SPAC1486.06" ; note "mRNA from AU009688" ;
chromosome1 GeneDB 3'-UTR 3205962 3206099 . - . mRNA SPAC1486.07c ; ID "SPAC1486.07c" ; db_xref "SPD:03/03F07" ; systematic_id "SPAC1486.07c" ; gene "SPAC1486.07c ||| mrpl19" ; note "mRNA from AU009832" ;
chromosome1 GeneDB CDS_parts 3206100 3206534 . - . mRNA SPAC1486.07c ; systematic_id "SPAC1486.07c" ; colour "7" ; gene "SPAC1486.07c ||| mrpl19" ; Alias "mrpl19" ; db_xref "SPD:03/03F07" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL185C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl19" ; product "mitochondrial ribosomal protein subunit L19 (predicted)" ;
chromosome1 GeneDB CDS 3206100 3206534 . - . mRNA SPAC1486.07c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3207482 3207519 . + . mRNA SPAC1486.08 ; ID "SPAC1486.08" ; systematic_id "SPAC1486.08" ; gene "SPAC1486.08" ; note "mRNA from AU006926" ;
chromosome1 GeneDB CDS_parts 3207520 3207980 . + . mRNA SPAC1486.08 ; db_xref "SPD:04/04B06" ; systematic_id "SPAC1486.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0008535; cytochrome c oxidase complex assembly
GO:0007005; mitochondrion organization and biogenesis" ; gene "SPAC1486.08" ; product "mitochondrial inner membrane protein involved in cytochrome c oxidase assembly Cox16 (predicted)" ;
chromosome1 GeneDB CDS 3207520 3207750 . + . mRNA SPAC1486.08 ; colour "7" ;
chromosome1 GeneDB CDS 3207870 3207980 . + . mRNA SPAC1486.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 3207751 3207756 . + . misc_feature unknown_2689 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3207853 3207869 . + . misc_feature unknown_2690 ; colour "6" ; note "ttaaccacctgttatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3207981 3208106 . + . mRNA SPAC1486.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1486.08" ; systematic_id "SPAC1486.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3209901 3211282 . + . mRNA SPAC1486.09 ; db_xref "SPD:44/44D04" ; systematic_id "SPAC1486.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PINc domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR056C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005634; nucleus
GO:0042274; ribosomal small subunit biogenesis
GO:0043248; proteasome assembly
GO:0030684; preribosome
GO:0003723; RNA binding
GO:0004540; ribonuclease activity" ; gene "SPAC1486.09" ; product "ribosome biogenesis protein Nob1 (predicted)" ;
chromosome1 GeneDB CDS 3209901 3210102 . + . mRNA SPAC1486.09 ; colour "7" ;
chromosome1 GeneDB CDS 3210318 3211282 . + . mRNA SPAC1486.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 3210103 3210108 . + . misc_feature unknown_2691 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3210103 3210317 . + . intron SPAC1486.09 ; db_xref "SPD:44/44D04" ; systematic_id "SPAC1486.09" ; gene "SPAC1486.09" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3210304 3210317 . + . misc_feature unknown_2692 ; colour "6" ; note "ctaacaaactatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3211283 3211407 . + . mRNA SPAC1486.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1486.09" ; systematic_id "SPAC1486.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3211850 3211978 . + . mRNA SPAC1486.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1486.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3211979 3214306 . + . mRNA SPAC1486.10 ; systematic_id "SPAC1486.10" ; colour "2" ; gene "thi1 ||| ntf1 ||| SPAC1486.10 ||| SPAC6G10.01" ; Alias "thi1" ; db_xref "SPD:28/28D02" ; synonym "ntf1 ||| SPAC6G10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; db_xref=PMID:8163491; date=20060804 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=20060804 ||| term=gene expression, transcriptionally regulates nmt1; db_xref=PMID:8163491; cv=gene_ex; date=20060804 ||| term=similar to S. pombe SPAC3C7.04 and SPBP8B7.30c and SPCC417.09C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulates genes involved in thiamin biosynthesis; cv=gene_ex; date=20071202 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0008270; zinc ion binding
GO:0031139; positive regulation of conjugation with cellular fusion
GO:0034307; regulation of ascospore formation
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0006355; regulation of transcription, DNA- dependent" ; primary_name "thi1" ; product "transcription factor Thi1" ;
chromosome1 GeneDB CDS 3211979 3214306 . + . mRNA SPAC1486.10 ; colour "2" ;
chromosome1 GeneDB misc_feature 3213085 3213131 . + . misc_feature unknown_2693 ; note "nominal overlap with cosmid SPAC1486 and cosmid SPAC6G10" ;
chromosome1 GeneDB 3'-UTR 3214307 3214432 . + . mRNA SPAC1486.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1486.10" ; systematic_id "SPAC1486.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3214541 3214689 . - . mRNA SPAC6G10.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G10.02c" ; systematic_id "SPAC6G10.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3214690 3218067 . - . mRNA SPAC6G10.02c ; systematic_id "SPAC6G10.02c" ; colour "2" ; gene "tea3 ||| SPAC6G10.02c" ; Alias "tea3" ; db_xref "SPD:30/30D12" ; GO "GO:0051285; cell cortex of cell tip
GO:0032153; cell division site
GO:0061161; regulation of establishment of bipolar cell polarity resulting in cell shape
GO:0032187; contractile ring localizatio involved in cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kelch repeat protein; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YHR158C and YGR238C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Tip Elongation Aberrant; cv=name_description; date=19700101 ||| term=phenotype, cell morphology, branched; qualifier=weak; db_xref=PMID:12007420; date=20100809" ; primary_name "tea3" ; product "cell end marker Tea3" ;
chromosome1 GeneDB CDS 3214690 3218067 . - . mRNA SPAC6G10.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3218066 3218286 . - . mRNA SPAC6G10.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G10.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3218727 3218951 . - . mRNA SPAC6G10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G10.03c" ; systematic_id "SPAC6G10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3218952 3220238 . - . mRNA SPAC6G10.03c ; db_xref "SPD:44/44B08" ; systematic_id "SPAC6G10.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=abhydrolase family; date=19700101 ||| term=orthologous to S. cerevisiae YGR110W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0004623; phospholipase A2 activity
GO:0032048; cardiolipin metabolic process
GO:0005739; mitochondrion" ; colour "7" ; gene "SPAC6G10.03c" ; product "mitochondrial cardiolipin-specific phopholipase (predicted)" ;
chromosome1 GeneDB CDS 3218952 3220238 . - . mRNA SPAC6G10.03c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3220237 3220373 . - . mRNA SPAC6G10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3220849 3221055 . - . mRNA SPAC6G10.04c ; ID "SPAC6G10.04c" ; db_xref "SPD:16/16H06" ; systematic_id "SPAC6G10.04c" ; gene "SPAC6G10.04c" ; note "mRNA from AU007542" ;
chromosome1 GeneDB CDS_parts 3221056 3222141 . - . mRNA SPAC6G10.04c ; db_xref "SPD:16/16H06" ; systematic_id "SPAC6G10.04c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0000278; regulation of mitotic cell cycle
GO:0043161; proteasomal ubiquitin-dependent protein catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR314W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC6G10.04c" ; product "20S proteasome component alpha 6 subunit Pre5 (predicted)" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB CDS 3221056 3221620 . - . mRNA SPAC6G10.04c ; colour "7" ;
chromosome1 GeneDB CDS 3221795 3221898 . - . mRNA SPAC6G10.04c ; colour "7" ;
chromosome1 GeneDB CDS 3221949 3222079 . - . mRNA SPAC6G10.04c ; colour "7" ;
chromosome1 GeneDB CDS 3222123 3222141 . - . mRNA SPAC6G10.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 3221621 3221632 . - . misc_feature unknown_2694 ; colour "6" ; note "ttaacgcaacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3221621 3221794 . - . intron SPAC6G10.04c ; db_xref "SPD:16/16H06" ; systematic_id "SPAC6G10.04c" ; gene "SPAC6G10.04c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3221789 3221794 . - . misc_feature unknown_2695 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3221899 3221916 . - . misc_feature unknown_2696 ; colour "6" ; note "ttaactttcaaaatgtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3221899 3221948 . - . intron SPAC6G10.04c ; db_xref "SPD:16/16H06" ; systematic_id "SPAC6G10.04c" ; gene "SPAC6G10.04c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3221943 3221948 . - . misc_feature unknown_2697 ; colour "6" ; note "gtatcc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3222080 3222095 . - . misc_feature unknown_2698 ; colour "6" ; note "ctaactttataattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3222117 3222122 . - . misc_feature unknown_2699 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3222461 3222504 . - . mRNA SPAC6G10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G10.05c" ; systematic_id "SPAC6G10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3222505 3226243 . - . mRNA SPAC6G10.05c ; systematic_id "SPAC6G10.05c" ; colour "7" ; gene "SPAC6G10.05c" ; Alias "trs120" ; db_xref "SPD:39/39C05" ; GO "GO:0030008; TRAPP complex
GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR407C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "trs120" ; product "TRAPP complex subunit Trs120 (predicted)" ;
chromosome1 GeneDB CDS 3222505 3222782 . - . mRNA SPAC6G10.05c ; colour "7" ;
chromosome1 GeneDB CDS 3222848 3226036 . - . mRNA SPAC6G10.05c ; colour "7" ;
chromosome1 GeneDB CDS 3226078 3226243 . - . mRNA SPAC6G10.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 3222783 3222798 . - . misc_feature unknown_2700 ; colour "6" ; note "ctaatttctataacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3222842 3222847 . - . misc_feature unknown_2701 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3226037 3226049 . - . misc_feature unknown_2702 ; colour "6" ; note "ctaatcttaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3226072 3226077 . - . misc_feature unknown_2703 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3226242 3226263 . - . mRNA SPAC6G10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3226929 3228192 . + . mRNA SPAC6G10.06 ; db_xref "SPD:20/20B12" ; systematic_id "SPAC6G10.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060106 ||| term=orthologous to S. cerevisiae YHR009C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0007126; meiosis" ; gene "SPAC6G10.06" ; product "FAD-dependent amino acid oxidase (predicted)" ;
chromosome1 GeneDB CDS 3226929 3226980 . + . mRNA SPAC6G10.06 ; colour "10" ;
chromosome1 GeneDB CDS 3227042 3227383 . + . mRNA SPAC6G10.06 ; colour "10" ;
chromosome1 GeneDB CDS 3227456 3228192 . + . mRNA SPAC6G10.06 ; colour "10" ;
chromosome1 GeneDB misc_feature 3226981 3226986 . + . misc_feature unknown_2704 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3227025 3227041 . + . misc_feature unknown_2705 ; colour "6" ; note "ctgacgatgatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3227384 3227389 . + . misc_feature unknown_2706 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3227444 3227455 . + . misc_feature unknown_2707 ; colour "6" ; note "ctaaccatttag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 3228517 3228532 . + . mRNA SPAC6G10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3228533 3230924 . + . mRNA SPAC6G10.07 ; db_xref "SPD:28/28E10" ; systematic_id "SPAC6G10.07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0003729; mRNA binding
GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000243; commitment complex
GO:0005846; nuclear cap binding complex" ; gene "SPAC6G10.07" ; product "nuclear cap-binding complex large subunit (predicted)" ;
chromosome1 GeneDB CDS 3228533 3228783 . + . mRNA SPAC6G10.07 ; colour "7" ;
chromosome1 GeneDB CDS 3228833 3230924 . + . mRNA SPAC6G10.07 ; colour "7" ;
chromosome1 GeneDB misc_feature 3228784 3228789 . + . misc_feature unknown_2708 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3228817 3228832 . + . misc_feature unknown_2709 ; colour "6" ; note "ctaatttaatccttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3230925 3230986 . + . mRNA SPAC6G10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G10.07" ; systematic_id "SPAC6G10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3231423 3231598 . + . mRNA SPAC6G10.08 ; Alias "idp1" ; ID "SPAC6G10.08" ; systematic_id "SPAC6G10.08" ; primary_name "idp1" ; gene "idp1 ||| SPAC6G10.08" ; note "mRNA from AU007174" ;
chromosome1 GeneDB CDS_parts 3231599 3232855 . + . mRNA SPAC6G10.08 ; systematic_id "SPAC6G10.08" ; colour "7" ; gene "idp1 ||| SPAC6G10.08" ; Alias "idp1" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00480; ||| KEGG:MAP00720; ||| SPD:20/20A10" ; GO "GO:0006102; isocitrate metabolism
GO:0006537; glutamate biosynthetic process
GO:0006099; tricarboxylic acid cycle
GO:0004450; isocitrate dehydrogenase (NADP+) activity
GO:0005739; mitochondrion
GO:0005737; cytoplasm
GO:0006740; NADPH regeneration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL066W and YLR174W and YNL009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human IDH1 and IDH2 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "idp1" ; product "isocitrate dehydrogenase Idp1 (predicted)" ; EC_number "1.1.1.42" ;
chromosome1 GeneDB CDS 3231599 3232855 . + . mRNA SPAC6G10.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3232856 3232976 . + . mRNA SPAC6G10.08 ; Alias "idp1" ; ID "SPAC6G10.08" ; db_xref "SPD:20/20A10" ; systematic_id "SPAC6G10.08" ; primary_name "idp1" ; gene "idp1 ||| SPAC6G10.08" ; note "mRNA from AU007332" ;
chromosome1 GeneDB 5'-UTR 3233633 3233669 . + . mRNA SPAC6G10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3233670 3236146 . + . mRNA SPAC6G10.09 ; db_xref "SPD:28/28H08" ; systematic_id "SPAC6G10.09" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0004573; mannosyl-oligosaccharide glucosidase activity
GO:0009272; fungal-type cell wall biogenesis
GO:0006487; protein amino acid N-linked glycosylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC6G10.09" ; product "alpha glucosidase I Gls1 (predicted)" ; EC_number "3.2.1.106" ;
chromosome1 GeneDB CDS 3233670 3233907 . + . mRNA SPAC6G10.09 ; colour "7" ;
chromosome1 GeneDB CDS 3233958 3236146 . + . mRNA SPAC6G10.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 3233908 3233913 . + . misc_feature unknown_2710 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3233944 3233957 . + . misc_feature unknown_2711 ; colour "6" ; note "ttaacattatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3236147 3236215 . + . mRNA SPAC6G10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G10.09" ; systematic_id "SPAC6G10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3236417 3237001 . - . mRNA SPAC6G10.10c ; db_xref "SPD:06/06C12" ; systematic_id "SPAC6G10.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC6G10.10c" ; product "human hmmtag2 homolog" ;
chromosome1 GeneDB CDS 3236417 3237001 . - . mRNA SPAC6G10.10c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 3237002 3237503 . - . mRNA SPAC6G10.10c ; ID "SPAC6G10.10c" ; systematic_id "SPAC6G10.10c" ; gene "SPAC6G10.10c" ; note "mRNA from AU013521" ;
chromosome1 GeneDB CDS_parts 3237910 3238362 . - . mRNA SPAC6G10.11c ; systematic_id "SPAC6G10.11c" ; colour "7" ; gene "ubi3 ||| SPAC6G10.11c" ; Alias "ubi3" ; db_xref "SPD:04/04A03" ; GO "GO:0005737; cytoplasm
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis and assembly
GO:0022627; cytosolic small ribosomal subunit" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ribosomal-ubiquitin fusion protein; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=warning, identical paralog; cv=warning; date=19700101 ||| term=orthologous to S. cerevisiae YLR167W; date=19700101 ||| term=phenotype, cell cycle defects; qualifier=overexpression; cv=phenotype; db_xref=PMID:12237855; date=20080728 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ubi3" ; product "ribosomal-ubiquitin fusion protein Ubi3 (predicted)" ;
chromosome1 GeneDB CDS 3237910 3238362 . - . mRNA SPAC6G10.11c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3239354 3239365 . - . mRNA SPAC6G10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G10.12c" ; systematic_id "SPAC6G10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3239366 3240967 . - . mRNA SPAC6G10.12c ; systematic_id "SPAC6G10.12c" ; colour "2" ; gene "ace2 ||| SPAC6G10.12c" ; Alias "ace2" ; db_xref "SPD:25/25F09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000920; cell separation during cytokinesis
GO:0045896; regulation of transcription, mitotic
GO:0045896; regulation of transcription, mitotic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, ubiquitinated; cv=pt_mod; date=20060818 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates adg1; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates adg2; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates adg3; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates eng1; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates agn1; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates rgf3; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates mid2; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates chr1; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates cfh4; cv=gene_ex; date=20100302 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YLR131C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15195092; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:16317047; date=20090213 ||| term=gene expression, target genes transcriptionally co-regulated by Mcs6; db_xref=PMID:19328067; cv=gene_ex; date=20090712 ||| term=gene expression, target genes transcriptionally co-regulated by Cdk9; db_xref=PMID:19328067; cv=gene_ex; date=20090712 ||| term=DNA binding specificity, binds UAS 5'-CCAGCC-3'; cv=DNA_binding_specificity; date=20100302" ; primary_name "ace2" ; product "transcription factor Ace2" ;
chromosome1 GeneDB CDS 3239366 3240967 . - . mRNA SPAC6G10.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3240966 3241160 . - . mRNA SPAC6G10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3241386 3241562 . - . mRNA SPAC6G9.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G9.01c" ; systematic_id "SPAC6G9.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3241473 3241524 . + . misc_feature unknown_2712 ; note "nominal overlap with cosmid SPAC6G10 and cosmid SPAC6G9" ;
chromosome1 GeneDB CDS_parts 3241563 3242332 . - . mRNA SPAC6G9.01c ; db_xref "SPD:43/43B10" ; systematic_id "SPAC6G9.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAC6G9.01c" ; product "conserved protein" ;
chromosome1 GeneDB CDS 3241563 3241570 . - . mRNA SPAC6G9.01c ; colour "10" ;
chromosome1 GeneDB CDS 3241655 3241753 . - . mRNA SPAC6G9.01c ; colour "10" ;
chromosome1 GeneDB CDS 3242152 3242332 . - . mRNA SPAC6G9.01c ; colour "10" ;
chromosome1 GeneDB intron 3241571 3241654 . - . intron SPAC6G9.01c ; db_xref "SPD:43/43B10" ; systematic_id "SPAC6G9.01c" ; gene "SPAC6G9.01c" ; note "confirmed" ;
chromosome1 GeneDB intron 3241754 3242151 . - . intron SPAC6G9.01c ; db_xref "SPD:43/43B10" ; systematic_id "SPAC6G9.01c" ; gene "SPAC6G9.01c" ; note "confirmed" ;
chromosome1 GeneDB 5'-UTR 3242331 3242370 . - . mRNA SPAC6G9.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3243146 3243257 . - . mRNA SPAC6G9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G9.02c" ; systematic_id "SPAC6G9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3243258 3245225 . - . mRNA SPAC6G9.02c ; systematic_id "SPAC6G9.02c" ; colour "7" ; gene "nop9 ||| SPAC6G9.02c" ; Alias "nop9" ; db_xref "SPD:27/27B07" ; GO "GO:0006364; rRNA processing
GO:0003723; RNA binding
GO:0005730; nucleolus
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YJL010C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nop9" ; product "RNA-binding protein Nop9 (predicted)" ;
chromosome1 GeneDB CDS 3243258 3245225 . - . mRNA SPAC6G9.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3245224 3245236 . - . mRNA SPAC6G9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 3245333 3245683 . + . LTR unknown_2713 ; note "tf1 type ltr" ;
chromosome1 GeneDB CDS_parts 3246488 3247590 . - . mRNA SPAC6G9.03c ; systematic_id "SPAC6G9.03c" ; colour "7" ; gene "SPAC6G9.03c ||| mug183" ; Alias "mug183" ; db_xref "SPD:17/17C11" ; GO "GO:0005634; nucleus
GO:0006342; chromatin silencing
GO:0006334; nucleosome assembly
GO:0042393; histone binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, histone chaperone; cv=m_f_g; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YNL206C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug183" ; product "histone chaperone Rtt106-like (predicted)" ;
chromosome1 GeneDB CDS 3246488 3246912 . - . mRNA SPAC6G9.03c ; colour "7" ;
chromosome1 GeneDB CDS 3246957 3247590 . - . mRNA SPAC6G9.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 3246913 3246924 . - . misc_feature unknown_2714 ; colour "2" ; note "splice branch and acceptor sequence, ctaatcaaatag" ;
chromosome1 GeneDB misc_feature 3246951 3246956 . - . misc_feature unknown_2715 ; colour "2" ; note "splice donor sequence, gtatgc" ;
chromosome1 GeneDB 5'-UTR 3247589 3247705 . - . mRNA SPAC6G9.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3247766 3248597 . + . mRNA SPAC6G9.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3248598 3252554 . + . mRNA SPAC6G9.04 ; systematic_id "SPAC6G9.04" ; colour "2" ; gene "mug79 ||| SPAC6G9.04" ; Alias "mug79" ; db_xref "SPD:48/48F06" ; GO "GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug79" ; product "meiotically upregulated gene Mug79" ;
chromosome1 GeneDB CDS 3248598 3252554 . + . mRNA SPAC6G9.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3252555 3252656 . + . mRNA SPAC6G9.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G9.04" ; systematic_id "SPAC6G9.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3253269 3253512 . + . mRNA SPAC6G9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3253513 3254370 . + . mRNA SPAC6G9.05 ; systematic_id "SPAC6G9.05" ; colour "7" ; gene "SPAC6G9.05 ||| pcd1" ; note "alterntive start at 12302" ; Alias "pcd1" ; db_xref "SPD:11/11D06" ; GO "GO:0016462; pyrophosphatase activity
GO:0005777; peroxisome
GO:0006732; coenzyme metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR151C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pcd1" ; product "coenzyme A diphosphatase (predicted)" ;
chromosome1 GeneDB CDS 3253513 3254370 . + . mRNA SPAC6G9.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3254371 3254430 . + . mRNA SPAC6G9.05 ; ID "SPAC6G9.05" ; db_xref "SPD:11/11D06" ; systematic_id "SPAC6G9.05" ; gene "SPAC6G9.05 ||| pcd1" ; note "mRNA from AU006507" ;
chromosome1 GeneDB 3'-UTR 3254533 3254538 . - . mRNA SPAC6G9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G9.06c" ; systematic_id "SPAC6G9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3254539 3258165 . - . mRNA SPAC6G9.06c ; systematic_id "SPAC6G9.06c" ; colour "2" ; db_xref "SPD:39/39B07" ; Alias "pcp1" ; GO "GO:0000930; gamma-tubulin complex
GO:0005816; spindle pole body
GO:0005516; calmodulin binding
GO:0000070; mitotic sister chromatid segregation
GO:0007020; microtubule nucleation
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0005515; protein binding
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11864908; date=20080414 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; db_xref=PMID:11864908; date=19700101 ||| term=orthologous to S. cerevisiae YDR356W; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:11864908; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pole target of Calmodulin in Pombe; cv=name_description; date=20100203" ; primary_name "pcp1" ; product "pericentrin Pcp1" ;
chromosome1 GeneDB CDS 3254539 3258165 . - . mRNA SPAC6G9.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3258164 3258269 . - . mRNA SPAC6G9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3258472 3258571 . - . mRNA SPAC6G9.07c ; Alias "arc4" ; ID "SPAC6G9.07c" ; db_xref "SPD:11/11G09 ||| EMBL:AB010050" ; systematic_id "SPAC6G9.07c" ; primary_name "arc4" ; gene "arc4 ||| SPAC6G9.07c" ;
chromosome1 GeneDB CDS_parts 3258572 3259444 . - . mRNA SPAC6G9.07c ; systematic_id "SPAC6G9.07c" ; colour "2" ; gene "arc4 ||| SPAC6G9.07c" ; Alias "arc4" ; obsolete_name "arp10" ; db_xref "SPD:11/11G09" ; GO "GO:0000147; actin cortical patch assembly
GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "arc4" ; product "ARP2/3 actin-organizing complex subunit Arc4" ;
chromosome1 GeneDB CDS 3258572 3258748 . - . mRNA SPAC6G9.07c ; colour "2" ;
chromosome1 GeneDB CDS 3258930 3259053 . - . mRNA SPAC6G9.07c ; colour "2" ;
chromosome1 GeneDB CDS 3259184 3259386 . - . mRNA SPAC6G9.07c ; colour "2" ;
chromosome1 GeneDB CDS 3259442 3259444 . - . mRNA SPAC6G9.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 3258749 3258768 . - . misc_feature unknown_2716 ; colour "2" ; note "splice branch and acceptor sequence, ctaacctttctttgt tatag" ;
chromosome1 GeneDB intron 3258749 3258929 . - . intron SPAC6G9.07c ; Alias "arc4" ; db_xref "SPD:11/11G09" ; systematic_id "SPAC6G9.07c" ; primary_name "arc4" ; gene "arc4 ||| SPAC6G9.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3258924 3258929 . - . misc_feature unknown_2717 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB misc_feature 3259054 3259074 . - . misc_feature unknown_2718 ; colour "2" ; note "splice branch and acceptor sequence, ctgatgcatttatga aattag" ;
chromosome1 GeneDB intron 3259054 3259183 . - . intron SPAC6G9.07c ; Alias "arc4" ; db_xref "SPD:11/11G09" ; systematic_id "SPAC6G9.07c" ; primary_name "arc4" ; gene "arc4 ||| SPAC6G9.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3259178 3259183 . - . misc_feature unknown_2719 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 3259387 3259401 . - . misc_feature unknown_2720 ; colour "2" ; note "splice branch and acceptor sequence, ttaacgaaggcatag" ;
chromosome1 GeneDB misc_feature 3259436 3259441 . - . misc_feature unknown_2721 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB 5'-UTR 3259443 3259477 . - . mRNA SPAC6G9.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3259647 3259703 . + . mRNA SPAC6G9.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3259704 3261107 . + . mRNA SPAC6G9.08 ; systematic_id "SPAC6G9.08" ; colour "2" ; gene "SPAC6G9.08 ||| ubp6" ; Alias "ubp6" ; db_xref "SPD:21/21G02" ; GO "GO:0005654; nucleoplasm
GO:0000502; protease complex
GO:0004221; ubiquitin thiolesterase activity
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0071947; protein deubiquitination involved in proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YFR010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human USP14 ortholog; date=20101001" ; primary_name "ubp6" ; product "ubiquitin C-terminal hydrolase Ubp6" ; EC_number "3.1.2.15" ;
chromosome1 GeneDB CDS 3259704 3261107 . + . mRNA SPAC6G9.08 ; colour "2" ;
chromosome1 GeneDB CDS_parts 3261471 3261920 . - . mRNA SPAC6G9.09c ; Alias "rpl24" ; systematic_id "SPAC6G9.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL031C and YGR148C and YLR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0003723; RNA binding
GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation" ; gene "rpl24 ||| SPAC6G9.09c" ; primary_name "rpl24" ; product "60S ribosomal protein L24 (predicted)" ;
chromosome1 GeneDB CDS 3261471 3261920 . - . mRNA SPAC6G9.09c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3261919 3261955 . - . mRNA SPAC6G9.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 3261997 3262004 . - . promoter unknown_2722 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB promoter 3262006 3262015 . - . promoter unknown_2723 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB CDS_parts 3262462 3267525 . - . mRNA SPAC6G9.10c ; systematic_id "SPAC6G9.10c" ; colour "2" ; gene "sen1 ||| SPAC6G9.10c" ; Alias "sen1" ; db_xref "SPD:31/31B03" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0043141; ATP-dependent 5'-3' DNA helicase activity
GO:0032575; ATP-dependent 5'-3' RNA helicase activity
GO:0008094; DNA-dependent ATPase activity
GO:0003717; RNA polymerase II transcription termination factor activity
GO:0008186; RNA-dependent ATPase activity
GO:0006364; rRNA processing
GO:0016180; snRNA processing
GO:0043144; snoRNA processing
GO:0008033; tRNA processing
GO:0006369; transcription termination from RNA polymerase II promoter
GO:0035649; Nrd1 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YLR430W; date=19700101 ||| term=disease associated, Ataxia- ocular apraxia 2; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, neurological disorders; date=20091123" ; primary_name "sen1" ; product "ATP-dependent 5' to 3' DNA/RNA helicase Sen1" ;
chromosome1 GeneDB CDS 3262462 3267525 . - . mRNA SPAC6G9.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3267524 3268008 . - . mRNA SPAC6G9.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3268311 3268740 . + . mRNA SPAC6G9.11 ; systematic_id "SPAC6G9.11" ; colour "2" ; gene "syb1 ||| SPAC6G9.11" ; Alias "syb1" ; db_xref "SPD:03/03E08" ; obsolete_name "snc1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, stubby cells; qualifier=high_penetrance|deletion; cv=phenotype; db_xref=PMID:12565827; date=20060106 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12565827; date=19700101 ||| term=orthologous to S. cerevisiae YAL030W and YOR327C; date=19700101 ||| term=SNARE; date=20080123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0051285; cell cortex of cell tip
GO:0030659; cytoplasmic vesicle membrane
GO:0032153; cell division site
GO:0005484; SNAP receptor activity
GO:0033205; cell cycle cytokinesis
GO:0006897; endocytosis
GO:0016192; vesicle-mediated transport" ; primary_name "syb1" ; product "SNAP receptor, synaptobrevin family" ;
chromosome1 GeneDB CDS 3268311 3268512 . + . mRNA SPAC6G9.11 ; colour "2" ;
chromosome1 GeneDB CDS 3268577 3268740 . + . mRNA SPAC6G9.11 ; colour "2" ;
chromosome1 GeneDB misc_feature 3268513 3268518 . + . misc_feature unknown_2724 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB misc_feature 3268563 3268576 . + . misc_feature unknown_2725 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttctttaag" ;
chromosome1 GeneDB 3'-UTR 3268741 3269487 . + . mRNA SPAC6G9.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G9.11" ; systematic_id "SPAC6G9.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3270206 3270234 . + . mRNA SPAC6G9.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3270235 3272097 . + . mRNA SPAC6G9.12 ; systematic_id "SPAC6G9.12" ; colour "2" ; gene "cfr1 ||| SPAC6G9.12" ; Alias "cfr1" ; db_xref "SPD:26/26C05" ; GO "GO:0009250; glucan biosynthesis
GO:0006031; chitin biosynthesis
GO:0032219; cell wall catabolism during cytogamy
GO:0032219; cell wall catabolism during cytogamy
GO:0032220; plasma membrane fusion during cytogamy
GO:0006893; Golgi to plasma membrane transport
GO:0005794; Golgi apparatus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; date=20060519 ||| term=orthologous to S. cerevisiae YLR330W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "cfr1" ; product "Chs five related protein Cfr1" ;
chromosome1 GeneDB CDS 3270235 3272097 . + . mRNA SPAC6G9.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3272098 3272295 . + . mRNA SPAC6G9.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G9.12" ; systematic_id "SPAC6G9.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3272150 3272699 . - . mRNA SPAC6G9.13c ; systematic_id "SPAC6G9.13c" ; colour "2" ; gene "bqt1 ||| mug23 ||| rec26 ||| SPAC6G9.13c" ; Alias "bqt1" ; db_xref "SPD:01/01E06" ; synonym "mug23 ||| rec26" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed in response to mating pheromone; db_xref=PMID:16615890; cv=gene_ex; date=20060517 ||| term=gene expression, promoter contains MCB; db_xref=PMID:16615890; date=20060517 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0045132; meiotic chromosome segregation
GO:0045141; telomere clustering
GO:0032121; attachment of telomeres to spindle pole body
GO:0045141; telomere clustering
GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination
GO:0030437; sporulation (sensu Fungi)
; spindle pole body
GO:0000781; chromosome, telomeric region
GO:0034613; cellular protein localization
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding" ; primary_name "bqt1" ; product "bouquet formation protein Bqt1" ;
chromosome1 GeneDB CDS 3272150 3272265 . - . mRNA SPAC6G9.13c ; colour "2" ;
chromosome1 GeneDB CDS 3272417 3272699 . - . mRNA SPAC6G9.13c ; colour "2" ;
chromosome1 GeneDB intron 3272266 3272416 . - . intron SPAC6G9.13c ; Alias "bqt1" ; db_xref "SPD:01/01E06" ; systematic_id "SPAC6G9.13c" ; primary_name "bqt1" ; gene "bqt1 ||| mug23 ||| rec26 ||| SPAC6G9.13c" ; note "confirmed by AB232930" ;
chromosome1 GeneDB 5'-UTR 3273942 3274134 . + . mRNA SPAC6G9.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3274135 3276230 . + . mRNA SPAC6G9.14 ; db_xref "SPD:27/27H03" ; systematic_id "SPAC6G9.14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=; date=19700101 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YGL014W and YGL178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0003729; mRNA binding
GO:0005737; cytoplasm" ; gene "SPAC6G9.14" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB CDS 3274135 3275874 . + . mRNA SPAC6G9.14 ; colour "7" ;
chromosome1 GeneDB CDS 3275925 3276230 . + . mRNA SPAC6G9.14 ; colour "7" ;
chromosome1 GeneDB misc_feature 3275875 3275880 . + . misc_feature unknown_2726 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 3275909 3275924 . + . misc_feature unknown_2727 ; colour "2" ; note "splice branch and acceptor sequence, ctaatcaatttacta g" ;
chromosome1 GeneDB 3'-UTR 3276231 3276580 . + . mRNA SPAC6G9.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G9.14" ; systematic_id "SPAC6G9.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3276638 3276650 . - . mRNA SPAC6G9.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC6G9.15c" ; systematic_id "SPAC6G9.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3276651 3278147 . - . mRNA SPAC6G9.15c ; db_xref "SPD:24/24C02" ; systematic_id "SPAC6G9.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC6G9.15c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3276651 3278147 . - . mRNA SPAC6G9.15c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 3278146 3278510 . - . mRNA SPAC6G9.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC6G9.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3278951 3279985 . - . mRNA SPAC6G9.16c ; systematic_id "SPAC6G9.16c" ; colour "8" ; gene "SPAC6G9.16c" ; note "gene prediciton extended by transcript data" ; db_xref "SPD:03/03A07" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3278951 3279367 . - . mRNA SPAC6G9.16c ; colour "8" ;
chromosome1 GeneDB CDS 3279420 3279539 . - . mRNA SPAC6G9.16c ; colour "8" ;
chromosome1 GeneDB CDS 3279683 3279819 . - . mRNA SPAC6G9.16c ; colour "8" ;
chromosome1 GeneDB CDS 3279865 3279985 . - . mRNA SPAC6G9.16c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 3279986 3280232 . - . mRNA SPAC6G9.16c ; ID "SPAC6G9.16c" ; db_xref "PMID:18488015" ; systematic_id "SPAC6G9.16c" ; gene "SPAC6G9.16c" ; note "derived from Solexa transcript data SPNG618" ;
chromosome1 GeneDB misc_feature 3280539 3280659 . + . misc_feature unknown_2728 ; note "nominal overlap with cosmid SPAC6G9, EM:Z81317 S. pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 3281408 3281803 . + . mRNA SPAC652.01 ; db_xref "SPD:02/02H12" ; systematic_id "SPAC652.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC652.01" ; product "BC10 family protein" ;
chromosome1 GeneDB CDS 3281408 3281514 . + . mRNA SPAC652.01 ; colour "10" ;
chromosome1 GeneDB CDS 3281584 3281803 . + . mRNA SPAC652.01 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 3281482 3282213 . - . mRNA SPAPB1E7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1E7.01c" ; systematic_id "SPAPB1E7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3281515 3281520 . + . misc_feature unknown_2729 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3281570 3281583 . + . misc_feature unknown_2730 ; colour "6" ; note "ctaacaggcttcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3281804 3283071 . + . mRNA SPAC652.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC652.01" ; systematic_id "SPAC652.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3282052 3282152 . + . misc_feature unknown_2731 ; note "nominal overlap with cosmid c652" ;
chromosome1 GeneDB CDS_parts 3282214 3282705 . - . mRNA SPAPB1E7.01c ; systematic_id "SPAPB1E7.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080729 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAPB1E7.01c" ; product "conserved fungal family" ;
chromosome1 GeneDB CDS 3282214 3282705 . - . mRNA SPAPB1E7.01c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 3282704 3282740 . - . mRNA SPAPB1E7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1E7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3283073 3283194 . - . mRNA SPAPB1E7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1E7.02c" ; systematic_id "SPAPB1E7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3283195 3285745 . - . mRNA SPAPB1E7.02c ; systematic_id "SPAPB1E7.02c" ; colour "2" ; gene "mcl1 ||| slr3 ||| SPAPB1E7.02c" ; Alias "mcl1" ; synonym "slr3" ; GO "GO:0005658; alpha DNA polymerase:primase complex
GO:0000228; nuclear chromosome
GO:0003682; chromatin binding
GO:0005515; protein binding
GO:0006261; DNA-dependent DNA replication
GO:0000082; G1/S transition of mitotic cell cycle
GO:0007090; regulation S phase of mitotic cell cycle
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15915339; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15643072; date=19700101 ||| term=phenotype, cut; allele=mcl1-1; qualifier=low_penetrance; db_xref=PMID:12455694; date=20100727 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human WDHD1 ortholog; date=20091111 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:12455694; date=20101004" ; primary_name "mcl1" ; product "DNA polymerase alpha accessory factor Mcl1" ;
chromosome1 GeneDB CDS 3283195 3285298 . - . mRNA SPAPB1E7.02c ; colour "2" ;
chromosome1 GeneDB CDS 3285357 3285508 . - . mRNA SPAPB1E7.02c ; colour "2" ;
chromosome1 GeneDB CDS 3285554 3285745 . - . mRNA SPAPB1E7.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3286539 3286601 . + . mRNA SPAPB1E7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1E7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3286602 3288456 . + . mRNA SPAPB1E7.03 ; Alias "rpc82" ; systematic_id "SPAPB1E7.03" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR190C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005666; DNA-directed RNA polymerase III complex
GO:0006383; transcription from RNA polymerase III promoter
GO:0003899; DNA-directed RNA polymerase activity" ; gene "SPAPB1E7.03 ||| rpc82" ; primary_name "rpc82" ; product "DNA-directed RNA polymerase III complex subunit Rpc82 (predicted)" ;
chromosome1 GeneDB CDS 3286602 3286667 . + . mRNA SPAPB1E7.03 ; colour "7" ;
chromosome1 GeneDB CDS 3286747 3288456 . + . mRNA SPAPB1E7.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3288457 3288468 . + . mRNA SPAPB1E7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1E7.03" ; systematic_id "SPAPB1E7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3288629 3288800 . - . mRNA SPAPB1E7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1E7.04c" ; systematic_id "SPAPB1E7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3288801 3292511 . - . mRNA SPAPB1E7.04c ; systematic_id "SPAPB1E7.04c" ; colour "7" ; GO "GO:0009986; cell surface
GO:0009277; cell wall (sensu Fungi)
GO:0004568; chitinase activity
GO:0000920; cell separation during cytokinesis
GO:0034232; spore wall chitin catabolic process
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR286C and YDR371W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; gene "SPAPB1E7.04c" ; product "chitinase (predicted)" ; EC_number "3.2.1.14" ;
chromosome1 GeneDB CDS 3288801 3292511 . - . mRNA SPAPB1E7.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3292510 3292753 . - . mRNA SPAPB1E7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1E7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3293576 3294110 . + . mRNA SPAPB1E7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1E7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3294111 3297341 . + . mRNA SPAPB1E7.05 ; Alias "gde1" ; systematic_id "SPAPB1E7.05" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=SPX domain protein; qualifier=inferred from context; date=20091119 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0046475; glycerophospholipid catabolic process
GO:0047389; glycerophosphocholine phosphodiesterase activity
GO:0005737; cytoplasm" ; gene "SPAPB1E7.05 ||| gde1" ; primary_name "gde1" ; product "glycerophosphoryl diester phosphodiesterase Gde1 (predicted)" ;
chromosome1 GeneDB CDS 3294111 3297341 . + . mRNA SPAPB1E7.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3297342 3297452 . + . mRNA SPAPB1E7.05 ; ID "SPAPB1E7.05" ; systematic_id "SPAPB1E7.05" ; gene "SPAPB1E7.05 ||| gde1" ; note "mRNA from SPD133" ;
chromosome1 GeneDB CDS_parts 3297520 3299867 . - . mRNA SPAPB1E7.06c ; systematic_id "SPAPB1E7.06c" ; colour "2" ; gene "eme1 ||| SPAPB1E7.06c" ; Alias "eme1" ; synonym "mms4 ||| slx2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA damage checkpoint defects, S-phase ; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=orthologous to S. cerevisiae YBR098W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006281; DNA repair
GO:0007131; meiotic recombination
GO:0031297; collapsed replication fork processing
GO:0048476; Holliday junction resolvase complex
GO:0008821; crossover junction endodeoxyribonuclease activity
GO:0005634; nucleus
GO:0000709; meiotic joint molecule formation
GO:0031573; intra-S DNA damage checkpoint" ; primary_name "eme1" ; product "Holliday junction resolvase subunit Eme1" ; EC_number "3.1.22.4" ;
chromosome1 GeneDB CDS 3297520 3299548 . - . mRNA SPAPB1E7.06c ; colour "2" ;
chromosome1 GeneDB CDS 3299633 3299724 . - . mRNA SPAPB1E7.06c ; colour "2" ;
chromosome1 GeneDB CDS 3299772 3299867 . - . mRNA SPAPB1E7.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3299866 3299904 . - . mRNA SPAPB1E7.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1E7.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3302822 3303629 . + . mRNA SPAPB1E7.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1E7.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3303630 3309965 . + . mRNA SPAPB1E7.07 ; Alias "glt1" ; systematic_id "SPAPB1E7.07" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL171C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0016040; glutamate synthase (NADH) activity
GO:0006537; glutamate biosynthesis" ; gene "SPAPB1E7.07 ||| glt1" ; primary_name "glt1" ; product "glutamate synthase Glt1 (predicted)" ; EC_number "1.4.1.13" ;
chromosome1 GeneDB CDS 3303630 3309965 . + . mRNA SPAPB1E7.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3309966 3310369 . + . mRNA SPAPB1E7.07 ; ID "SPAPB1E7.07" ; systematic_id "SPAPB1E7.07" ; gene "SPAPB1E7.07 ||| glt1" ; note "mRNA from AU014250" ;
chromosome1 GeneDB CDS_parts 3310671 3312335 . - . mRNA SPAPB1E7.08c ; systematic_id "SPAPB1E7.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022857; transmembrane transporter activity" ; colour "7" ; gene "SPAPB1E7.08c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB CDS 3310671 3312335 . - . mRNA SPAPB1E7.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3313437 3313640 . + . mRNA SPAPB1E7.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1E7.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3313641 3315860 . + . mRNA SPAPB1E7.09 ; systematic_id "SPAPB1E7.09" ; colour "2" ; gene "ogm2 ||| SPAPB1E7.09 ||| oma2" ; Alias "ogm2" ; synonym "oma2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, O-glycoside mannosyltransferase; cv=name_description; date=20060420 ||| term=PMT family; date=19700101 ||| term=PMT2 subfamily; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15809069; date=19700101 ||| term=orthologous to S. cerevisiae YOR321W and YGR199W and YAL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0031502; dolichyl-phosphate-mannose-protein mannosyltransferase complex
GO:0012505; endomembrane system
GO:0005789; endoplasmic reticulum membrane
GO:0031965; nuclear membrane
GO:0004169; dolichyl-phosphate-mannose-protein mannosyltransferase activity
GO:0046982; protein heterodimerization activity
GO:0035269; protein amino acid O-linked mannosylation" ; primary_name "ogm2" ; product "protein O-mannosyltransferase Ogm2" ; EC_number "2.4.1.109" ;
chromosome1 GeneDB CDS 3313641 3315860 . + . mRNA SPAPB1E7.09 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3315861 3315900 . + . mRNA SPAPB1E7.09 ; Alias "ogm2" ; ID "SPAPB1E7.09" ; systematic_id "SPAPB1E7.09" ; primary_name "ogm2" ; gene "ogm2 ||| SPAPB1E7.09 ||| oma2" ; note "mRNA from AU006482" ;
chromosome1 GeneDB snoRNA 3316466 3316609 . - . snoRNA SPSNORNA.43 ; Alias "snR91" ; db_xref "EMBL:AJ632009 ||| PMID:15716270" ; systematic_id "SPSNORNA.43" ; gene "SPSNORNA.43" ; primary_name "snR91" ; product "small nucleolar RNA snR91" ;
chromosome1 GeneDB 5'-UTR 3316899 3316923 . + . mRNA SPAPB1E7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1E7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3316924 3317313 . + . mRNA SPAPB1E7.10 ; Alias "rpc17" ; systematic_id "SPAPB1E7.10" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL011C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; DNA-directed RNA polymerase III complex
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003899; DNA-directed RNA polymerase activity" ; gene "rpc17 ||| SPAPB1E7.10" ; primary_name "rpc17" ; product "DNA-directed RNA polymerase III complex subunit Rpc17" ;
chromosome1 GeneDB CDS 3316924 3317313 . + . mRNA SPAPB1E7.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3317314 3317528 . + . mRNA SPAPB1E7.10 ; Alias "rpc17" ; ID "SPAPB1E7.10" ; systematic_id "SPAPB1E7.10" ; primary_name "rpc17" ; gene "rpc17 ||| SPAPB1E7.10" ; note "mRNA from AU009860" ;
chromosome1 GeneDB 3'-UTR 3317665 3317672 . - . mRNA SPAPB1E7.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB1E7.11c" ; systematic_id "SPAPB1E7.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3317673 3318632 . - . mRNA SPAPB1E7.11c ; systematic_id "SPAPB1E7.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAPB1E7.11c" ; product "sequence orphan" ; note "term=very low similarity to S. cerevisiae YFR046C" ;
chromosome1 GeneDB CDS 3317673 3318632 . - . mRNA SPAPB1E7.11c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 3318631 3318876 . - . mRNA SPAPB1E7.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB1E7.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3319260 3319979 . + . mRNA SPAPB1E7.12 ; systematic_id "SPAPB1E7.12" ; colour "7" ; gene "rps602 ||| rps6-2 ||| rps6 ||| SPAPB1E7.12" ; Alias "rps602" ; synonym "rps6-2 ||| rps6" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL090C and YBR181C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; primary_name "rps602" ; product "40S ribosomal protein S6 (predicted)" ;
chromosome1 GeneDB CDS 3319260 3319979 . + . mRNA SPAPB1E7.12 ; colour "7" ;
chromosome1 GeneDB rep_origin 3320125 3321168 . + . rep_origin unknown_2732 ; note "5211 (-1) 1 1044 SPARS767 X07892 Yeast ARS element (pARS767)" ;
chromosome1 GeneDB LTR 3321466 3321823 . + . LTR unknown_2733 ; note "1646 (-1) 1 358 Tf1-type LTR" ;
chromosome1 GeneDB CDS_parts 3321979 3322512 . + . mRNA SPAPB1E7.14 ; Alias "iec5" ; systematic_id "SPAPB1E7.14" ; controlled_curation "term=species distribution, no apparent orthologs; date=20080102 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=warning, gene structure updated; cv=warning; date=20090724 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; colour "2" ; primary_name "iec5" ; product "Ino80 complex subunit Iec5" ;
chromosome1 GeneDB CDS 3321979 3322018 . + . mRNA SPAPB1E7.14 ; colour "2" ;
chromosome1 GeneDB CDS 3322071 3322331 . + . mRNA SPAPB1E7.14 ; colour "2" ;
chromosome1 GeneDB CDS 3322379 3322512 . + . mRNA SPAPB1E7.14 ; colour "2" ;
chromosome1 GeneDB intron 3322332 3322378 . + . intron SPAPB1E7.14 ; systematic_id "SPAPB1E7.14" ; note "confirmed by Solexa transread data PMID:18488015" ;
chromosome1 GeneDB 3'-UTR 3322678 3322912 . - . mRNA SPAC2E1P5.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2E1P5.01c" ; systematic_id "SPAC2E1P5.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3322913 3324478 . - . mRNA SPAC2E1P5.01c ; systematic_id "SPAC2E1P5.01c" ; colour "2" ; gene "mns1 ||| SPAPB1E7.13c ||| SPAC2E1P5.01c" ; Alias "mns1" ; db_xref "SPD:50/50H04" ; synonym "SPAPB1E7.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR131W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004571; mannosyl-oligosaccharide 1,2-alpha- mannosidase activity
GO:0006487; protein amino acid N-linked glycosylation
GO:0005789; endoplasmic reticulum membrane
GO:0005509; calcium ion binding" ; primary_name "mns1" ; product "mannosyl-oligosaccharide 1,2-alpha-mannosidase" ;
chromosome1 GeneDB CDS 3322913 3324478 . - . mRNA SPAC2E1P5.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 3323659 3323839 . + . misc_feature unknown_2734 ; note "nominal overlap with cosmid SPAC2E1P5" ;
chromosome1 GeneDB 5'-UTR 3324477 3324816 . - . mRNA SPAC2E1P5.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2E1P5.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3325263 3325646 . - . mRNA SPAC2E1P5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2E1P5.02c" ; systematic_id "SPAC2E1P5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3325647 3326138 . - . mRNA SPAC2E1P5.02c ; systematic_id "SPAC2E1P5.02c" ; colour "10" ; gene "SPAC2E1P5.02c ||| mug109" ; Alias "mug109" ; db_xref "SPD:04/04F11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; GO "GO:0017137; Rab GTPase binding
GO:0016192; vesicle-mediated transport" ; primary_name "mug109" ; product "Rab GTPase binding protein upregulated in meiosis II (predicted)" ;
chromosome1 GeneDB CDS 3325647 3326138 . - . mRNA SPAC2E1P5.02c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 3326852 3326897 . + . mRNA SPAC2E1P5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2E1P5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3326898 3327809 . + . mRNA SPAC2E1P5.03 ; db_xref "SPD:12/12F04" ; systematic_id "SPAC2E1P5.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding" ; gene "SPAC2E1P5.03" ; product "DNAJ domain protein Erj5 (predicted)" ;
chromosome1 GeneDB CDS 3326898 3327809 . + . mRNA SPAC2E1P5.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3327810 3327959 . + . mRNA SPAC2E1P5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2E1P5.03" ; systematic_id "SPAC2E1P5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3327940 3329007 . - . mRNA SPAC2E1P5.04c ; systematic_id "SPAC2E1P5.04c" ; colour "2" ; gene "cwg2 ||| orb7 ||| SPAC2E1P5.04c" ; Alias "cwg2" ; db_xref "SPD:16/16D04" ; synonym "orb7" ; GO "GO:0005953; CAAX-protein geranylgeranyltransferase complex
GO:0004663; Rab-protein geranylgeranyltransferase activity
GO:0005515; protein binding
GO:0004661; protein geranylgeranyltransferase activity
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0018344; protein geranylgeranylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9781874; date=20070215 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:8522609; date=20100731 ||| term=orthologous to S. cerevisiae YGL155W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Rho1; db_xref=PMID:9781874; date=20100823" ; primary_name "cwg2" ; product "geranylgeranyltransferase I beta subunit Cwg2" ; EC_number "2.5.1.-" ;
chromosome1 GeneDB CDS 3327940 3329007 . - . mRNA SPAC2E1P5.04c ; colour "2" ;
chromosome1 GeneDB CDS_parts 3329362 3330936 . + . mRNA SPAC2E1P5.05 ; db_xref "SPD:45/45B11" ; systematic_id "SPAC2E1P5.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex" ; gene "SPAC2E1P5.05" ; product "U3 snoRNP-associated protein Rrp9 (predicted)" ;
chromosome1 GeneDB CDS 3329362 3330936 . + . mRNA SPAC2E1P5.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3330937 3331144 . + . mRNA SPAC2E1P5.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2E1P5.05" ; systematic_id "SPAC2E1P5.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3332574 3332668 . + . mRNA SPAC26A3.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26A3.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3332669 3334270 . + . mRNA SPAC26A3.01 ; systematic_id "SPAC26A3.01" ; colour "2" ; gene "sxa1 ||| SPAC2E1P5.06 ||| SPAC26A3.01" ; note "does not appear to be a yapsin (PMID 11115118)" ; Alias "sxa1" ; db_xref "SPD:25/25F10" ; synonym "SPAC2E1P5.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR120C and YDR144C and YLR121C and YIR039C and YDR349C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; GO "GO:0000747; conjugation with cellular fusion
GO:0005886; plasma membrane
GO:0009986; cell surface
GO:0004190; aspartic-type endopeptidase activity" ; primary_name "sxa1" ; product "aspartic protease Sxa1" ; EC_number "3.4.23.-" ;
chromosome1 GeneDB CDS 3332669 3334270 . + . mRNA SPAC26A3.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 3334107 3334210 . + . misc_feature unknown_2735 ; note "nominal overlap with cosmid SPAC26A3 and cosmid SPAC2E1P5" ;
chromosome1 GeneDB 3'-UTR 3334271 3334664 . + . mRNA SPAC26A3.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.01" ; systematic_id "SPAC26A3.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3334881 3334991 . + . mRNA SPAC26A3.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26A3.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3334992 3336519 . + . mRNA SPAC26A3.02 ; systematic_id "SPAC26A3.02" ; colour "2" ; gene "myh1 ||| myh ||| SPAC26A3.02" ; Alias "myh1" ; db_xref "SPD:24/24G10" ; synonym "myh" ; GO "GO:0005634; nucleus
GO:0051539; 4 iron, 4 sulfur cluster binding
GO:0019104; DNA N-glycosylase activity
GO:0003677; DNA binding
GO:0000702; oxidized base lesion DNA N-glycosylase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000701; purine-specific mismatch base pair DNA N-glycosylase activity
GO:0000077; DNA damage checkpoint
GO:0006281; DNA repair
GO:0006284; base-excision repair
GO:0034644; cellular response to UV" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, mutator; qualifier=deletion; cv=phenotype; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20090108 ||| term=phenotype, sensitive to UV; cv=phenotype; date=20090108 ||| term=phenotype, chromosome segregation defects; qualifier=double_mutant; with=rad1; cv=phenotype; db_xref=PMID:18675827; date=20090108 ||| term=phenotype, DNA fragmentation; qualifier=double_mutant; with=rad1;cv=phenotype; db_xref=PMID:18675827; date=20090108 ||| term=human MUTYH ortholog; date=20100217" ; primary_name "myh1" ; product "adenine DNA glycosylase Myh1" ; EC_number "3.2.2.-" ;
chromosome1 GeneDB CDS 3334992 3335587 . + . mRNA SPAC26A3.02 ; colour "2" ;
chromosome1 GeneDB CDS 3335687 3335880 . + . mRNA SPAC26A3.02 ; colour "2" ;
chromosome1 GeneDB CDS 3335924 3336519 . + . mRNA SPAC26A3.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 3335588 3335593 . + . misc_feature unknown_2736 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB intron 3335588 3335686 . + . intron SPAC26A3.02 ; Alias "myh1" ; db_xref "SPD:24/24G10" ; systematic_id "SPAC26A3.02" ; primary_name "myh1" ; gene "myh1 ||| myh ||| SPAC26A3.02" ; note "Intron confirmed by EST" ;
chromosome1 GeneDB misc_feature 3335671 3335686 . + . misc_feature unknown_2737 ; colour "2" ; note "splice branch and acceptor sequence, ctaaccaaatattta g" ;
chromosome1 GeneDB misc_feature 3335881 3335886 . + . misc_feature unknown_2738 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB intron 3335881 3335923 . + . intron SPAC26A3.02 ; Alias "myh1" ; db_xref "SPD:24/24G10" ; systematic_id "SPAC26A3.02" ; primary_name "myh1" ; gene "myh1 ||| myh ||| SPAC26A3.02" ; note "Intron confirmed by EST" ;
chromosome1 GeneDB misc_feature 3335908 3335923 . + . misc_feature unknown_2739 ; colour "2" ; note "splice branch and acceptor sequence, ctaacaatgatccaa g" ;
chromosome1 GeneDB CDS_parts 3336520 3337227 . - . mRNA SPAC26A3.03c ; systematic_id "SPAC26A3.03c" ; colour "7" ; gene "rmi1 ||| SPAC26A3.03c" ; Alias "rmi1" ; db_xref "SPD:08/08D03" ; GO "GO:0031422; RecQ helicase-Topo III complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006974; response to DNA damage stimulus
GO:0007062; sister chromatid cohesion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15889139; date=19700101 ||| term=orthologous to S. cerevisiae YPL024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rmi1" ; product "RecQ mediated genome instability protein Rmi1 (predicted)" ; reserved_name "rmi1" ;
chromosome1 GeneDB CDS 3336520 3337227 . - . mRNA SPAC26A3.03c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3336520 3337199 . + . mRNA SPAC26A3.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.02" ; systematic_id "SPAC26A3.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 3337685 3337692 . + . promoter unknown_2740 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB CDS_parts 3337748 3338278 . + . mRNA SPAC26A3.04 ; systematic_id "SPAC26A3.04" ; colour "7" ; gene "rpl2002 ||| rpl20 ||| rpl20-2 ||| SPAC26A3.04" ; Alias "rpl2002" ; db_xref "SPD:39/39H07" ; synonym "rpl20 ||| rpl20-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR242C and YOR312C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl2002" ; product "60S ribosomal protein L20 (predicted)" ;
chromosome1 GeneDB CDS 3337748 3338278 . + . mRNA SPAC26A3.04 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3339122 3339135 . + . mRNA SPAC26A3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26A3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3339136 3344232 . + . mRNA SPAC26A3.05 ; systematic_id "SPAC26A3.05" ; colour "7" ; gene "chc1 ||| SPAC26A3.05" ; Alias "chc1" ; db_xref "SPD:31/31B05" ; GO "GO:0030125; clathrin vesicle coat
GO:0016192; vesicle-mediated transport
GO:0005198; structural molecule activity
GO:0006897; endocytosis
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL206C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CLTC and CLTCL1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "chc1" ; product "clathrin heavy chain Chc1 (predicted)" ;
chromosome1 GeneDB CDS 3339136 3339177 . + . mRNA SPAC26A3.05 ; colour "7" ;
chromosome1 GeneDB CDS 3339218 3339291 . + . mRNA SPAC26A3.05 ; colour "7" ;
chromosome1 GeneDB CDS 3339348 3344232 . + . mRNA SPAC26A3.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 3339178 3339183 . + . misc_feature unknown_2741 ; colour "2" ; note "splice donor sequence, gtaggt" ;
chromosome1 GeneDB intron 3339178 3339217 . + . intron SPAC26A3.05 ; Alias "chc1" ; db_xref "SPD:31/31B05" ; systematic_id "SPAC26A3.05" ; primary_name "chc1" ; gene "chc1 ||| SPAC26A3.05" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3339205 3339217 . + . misc_feature unknown_2742 ; colour "2" ; note "splice branch and acceptor sequence, ctaatgcttgtag" ;
chromosome1 GeneDB misc_feature 3339292 3339297 . + . misc_feature unknown_2743 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 3339329 3339347 . + . misc_feature unknown_2744 ; colour "2" ; note "splice branch and acceptor sequence, ctaactactatacgt gtag" ;
chromosome1 GeneDB 3'-UTR 3344233 3344342 . + . mRNA SPAC26A3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.05" ; systematic_id "SPAC26A3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3344784 3345763 . + . mRNA SPAC26A3.06 ; db_xref "SPD:14/14A12" ; systematic_id "SPAC26A3.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0016435; rRNA (guanine) methyltranferase activity
GO:0000154; rRNA modification" ; gene "SPAC26A3.06" ; product "rRNA (guanine) methyltransferase (predicted)" ;
chromosome1 GeneDB CDS 3344784 3344819 . + . mRNA SPAC26A3.06 ; colour "7" ;
chromosome1 GeneDB CDS 3344871 3344908 . + . mRNA SPAC26A3.06 ; colour "7" ;
chromosome1 GeneDB CDS 3345031 3345763 . + . mRNA SPAC26A3.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 3344820 3344825 . + . misc_feature unknown_2745 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 3344855 3344870 . + . misc_feature unknown_2746 ; colour "2" ; note "splice branch and acceptor sequence, ttaaccttttctcta g" ;
chromosome1 GeneDB misc_feature 3344909 3344914 . + . misc_feature unknown_2747 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 3345015 3345030 . + . misc_feature unknown_2748 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgatcaattca g" ;
chromosome1 GeneDB 3'-UTR 3345764 3345770 . + . mRNA SPAC26A3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.06" ; systematic_id "SPAC26A3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3346160 3346334 . - . mRNA SPAC26A3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.07c" ; systematic_id "SPAC26A3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3346335 3346859 . - . mRNA SPAC26A3.07c ; systematic_id "SPAC26A3.07c" ; colour "7" ; gene "rpl1101 ||| rpl11-1 ||| rpl11 ||| SPAC26A3.07c" ; Alias "rpl1101" ; db_xref "SPD:05/05C03" ; synonym "rpl11-1 ||| rpl11" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR102C and YGR085C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1101" ; product "60S ribosomal protein L11 (predicted)" ;
chromosome1 GeneDB CDS 3346335 3346859 . - . mRNA SPAC26A3.07c ; colour "7" ;
chromosome1 GeneDB promoter 3346925 3346932 . - . promoter unknown_2749 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB promoter 3346943 3346952 . - . promoter unknown_2750 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB CDS_parts 3347053 3347561 . + . mRNA SPAC26A3.08 ; systematic_id "SPAC26A3.08" ; colour "2" ; gene "smb1 ||| smb ||| SPAC26A3.08" ; Alias "smb1" ; db_xref "SPD:05/05A04" ; synonym "smb" ; controlled_curation "term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YER029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005685; snRNP U1
GO:0005681; spliceosome complex
GO:0000395; nuclear mRNA 5'-splice site recognition" ; primary_name "smb1" ; product "Sm snRNP core protein Smb1" ;
chromosome1 GeneDB CDS 3347053 3347055 . + . mRNA SPAC26A3.08 ; colour "2" ;
chromosome1 GeneDB CDS 3347121 3347561 . + . mRNA SPAC26A3.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 3347056 3347061 . + . misc_feature unknown_2751 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 3347105 3347120 . + . misc_feature unknown_2752 ; colour "2" ; note "splice branch and acceptor sequence, ctaactgcaagttta g" ;
chromosome1 GeneDB 3'-UTR 3347562 3348080 . + . mRNA SPAC26A3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.08" ; systematic_id "SPAC26A3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3348247 3348568 . - . mRNA SPAC26A3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.09c" ; systematic_id "SPAC26A3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3348569 3352396 . - . mRNA SPAC26A3.09c ; systematic_id "SPAC26A3.09c" ; colour "7" ; gene "SPAC26A3.09c ||| rga2" ; Alias "rga2" ; db_xref "SPD:39/39C11" ; GO "GO:0005100; Rho GTPase activator activity
GO:0032319; regulation of Rho GTPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:11737264; date=20100917 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL115C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rga2" ; product "Rho-type GTPase activating protein Rga2 (predicted)" ; reserved_name "rga2" ;
chromosome1 GeneDB CDS 3348569 3352396 . - . mRNA SPAC26A3.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 3351304 3351327 . - . misc_feature unknown_2753 ; colour "6" ; note "potential splice branch and acceptor sequence, ctaat aatttaagctcgaagtcag" ;
chromosome1 GeneDB 5'-UTR 3352377 3352514 . + . mRNA SPAC26A3.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26A3.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3352515 3355615 . + . mRNA SPAC26A3.10 ; systematic_id "SPAC26A3.10" ; colour "7" ; gene "SPAC26A3.10 ||| cnt6" ; note "SPAC26A3.09c and SPAC26A3.10 are convergent and very close, functionally related, perhaps co-regulated?" ; Alias "cnt6" ; db_xref "SPD:30/30A07" ; GO "GO:0005096; GTPase activator activity
GO:0043087; regulation of GTPase activity
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=similar to S. pombe SPBC17G9.08c; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=centaurin ADOP ribosylation factor GTPase activating protein family; date=20090108" ; primary_name "cnt6" ; product "centaurin ADOP ribosylation factor GTPase activating protein family (predicted)" ;
chromosome1 GeneDB CDS 3352515 3352530 . + . mRNA SPAC26A3.10 ; colour "7" ;
chromosome1 GeneDB CDS 3352569 3352693 . + . mRNA SPAC26A3.10 ; colour "7" ;
chromosome1 GeneDB CDS 3352985 3355615 . + . mRNA SPAC26A3.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 3352531 3352536 . + . misc_feature unknown_2754 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 3352558 3352568 . + . misc_feature unknown_2755 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgtttag" ;
chromosome1 GeneDB misc_feature 3352694 3352699 . + . misc_feature unknown_2756 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB misc_feature 3352966 3352984 . + . misc_feature unknown_2757 ; colour "2" ; note "splice branch and acceptor sequence, ctaactttgtaaaaa ttag" ;
chromosome1 GeneDB 3'-UTR 3355616 3356226 . + . mRNA SPAC26A3.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.10" ; systematic_id "SPAC26A3.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3356720 3356731 . + . mRNA SPAC26A3.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26A3.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3356732 3357749 . + . mRNA SPAC26A3.11 ; db_xref "SPD:15/15B10" ; systematic_id "SPAC26A3.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR351C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0016810; hydrolase activity, acting on carbon- nitrogen (but not peptide) bonds" ; gene "SPAC26A3.11" ; product "amidohydrolase" ;
chromosome1 GeneDB CDS 3356732 3357079 . + . mRNA SPAC26A3.11 ; colour "10" ;
chromosome1 GeneDB CDS 3357129 3357749 . + . mRNA SPAC26A3.11 ; colour "10" ;
chromosome1 GeneDB misc_feature 3357080 3357085 . + . misc_feature unknown_2758 ; colour "2" ; note "splice donor sequence, gtttgt" ;
chromosome1 GeneDB intron 3357080 3357128 . + . intron SPAC26A3.11 ; db_xref "SPD:15/15B10" ; systematic_id "SPAC26A3.11" ; gene "SPAC26A3.11" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3357114 3357128 . + . misc_feature unknown_2759 ; colour "2" ; note "splice branch and acceptor sequence, ctaacggtactgtag" ;
chromosome1 GeneDB 3'-UTR 3357750 3357817 . + . mRNA SPAC26A3.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.11" ; systematic_id "SPAC26A3.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3357817 3357916 . - . mRNA SPAC26A3.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.12c" ; systematic_id "SPAC26A3.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3357917 3360892 . - . mRNA SPAC26A3.12c ; systematic_id "SPAC26A3.12c" ; colour "2" ; gene "dhp1 ||| SPAC26A3.12c ||| rat1" ; note "CARE dph1 is in same cosmid" ; Alias "dhp1" ; db_xref "SPD:29/29G08" ; synonym "rat1" ; GO "GO:0005634; nucleus
GO:0000070; mitotic sister chromatid segregation
GO:0006396; RNA processing
GO:0004534; 5'-3' exoribonuclease activity
GO:0006364; 35S primary transcript processing
GO:0030846; transcription termination from Pol II promoter, RNA polymerase(A) coupled
GO:0005634; nucleus
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR048C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8190062; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dhp1" ; product "5'-3' exoribonuclease Dhp1" ; EC_number "3.1.11.-" ;
chromosome1 GeneDB CDS 3357917 3360892 . - . mRNA SPAC26A3.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3360891 3360957 . - . mRNA SPAC26A3.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26A3.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3361143 3366062 . - . misc_feature Tf2-4 ; db_xref "SO:0000186" ; systematic_id "Tf2-4" ; note "LTR-retrotransposon" ;
chromosome1 GeneDB LTR 3361148 3361496 . - . LTR unknown_2760 ; colour "4" ; note "tf2-type LTR" ;
chromosome1 GeneDB CDS_parts 3361547 3365548 . - . mRNA SPAC26A3.13c ; Alias "Tf2-4" ; systematic_id "SPAC26A3.13c" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "Tf2-4 ||| SPAC26A3.13c" ; primary_name "Tf2-4" ; product "retrotransposable element" ;
chromosome1 GeneDB CDS 3361547 3365548 . - . mRNA SPAC26A3.13c ; colour "4" ;
chromosome1 GeneDB LTR 3365714 3366062 . - . LTR unknown_2761 ; colour "4" ; note "tf2-type LTR" ;
chromosome1 GeneDB 3'-UTR 3366342 3366742 . - . mRNA SPAC26A3.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.14c" ; systematic_id "SPAC26A3.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3366743 3367056 . - . mRNA SPAC26A3.14c ; db_xref "SPD:01/01F05" ; systematic_id "SPAC26A3.14c" ; synonym "SPAC23A6.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL156W-B; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC26A3.14c" ; product "DUF1748 family protein" ;
chromosome1 GeneDB CDS 3366743 3366872 . - . mRNA SPAC26A3.14c ; colour "10" ;
chromosome1 GeneDB CDS 3366932 3367020 . - . mRNA SPAC26A3.14c ; colour "10" ;
chromosome1 GeneDB CDS 3367054 3367056 . - . mRNA SPAC26A3.14c ; colour "10" ;
chromosome1 GeneDB misc_feature 3366873 3366892 . - . misc_feature unknown_2762 ; colour "2" ; note "splice branch and acceptor sequence, ttaacaacatgtaat ggtag" ;
chromosome1 GeneDB misc_feature 3366926 3366931 . - . misc_feature unknown_2763 ; colour "2" ; note "splice donor sequence gtaagt" ;
chromosome1 GeneDB misc_feature 3367021 3367030 . - . misc_feature unknown_2764 ; colour "2" ; note "splice branch and acceptor sequence, ctaatagtag" ;
chromosome1 GeneDB misc_feature 3367048 3367053 . - . misc_feature unknown_2765 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB 5'-UTR 3367055 3367118 . - . mRNA SPAC26A3.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26A3.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3367496 3367656 . - . mRNA SPAC26A3.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.15c" ; systematic_id "SPAC26A3.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3367657 3369519 . - . mRNA SPAC26A3.15c ; systematic_id "SPAC26A3.15c" ; colour "2" ; gene "nsp1 ||| SPAC26A3.15c" ; Alias "nsp1" ; db_xref "SPD:26/26C06" ; GO "; nuclear membrane
GO:0005643; nuclear pore
GO:0051301; cell division
GO:0006913; nucleocytoplasmic transport
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=FG repeat; date=19700101 ||| term=orthologous to S. cerevisiae YJL041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nsp1" ; product "nucleoporin Nsp1" ;
chromosome1 GeneDB CDS 3367657 3369449 . - . mRNA SPAC26A3.15c ; colour "2" ;
chromosome1 GeneDB CDS 3369516 3369519 . - . mRNA SPAC26A3.15c ; colour "2" ;
chromosome1 GeneDB misc_feature 3369450 3369465 . - . misc_feature unknown_2766 ; colour "2" ; note "splice branch and acceptor sequence, ctaacaaaatcaata g" ;
chromosome1 GeneDB misc_feature 3369510 3369515 . - . misc_feature unknown_2767 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 3369518 3369539 . - . mRNA SPAC26A3.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26A3.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3369700 3369742 . + . mRNA SPAC26A3.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26A3.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3369743 3370807 . + . mRNA SPAC26A3.16 ; systematic_id "SPAC26A3.16" ; colour "2" ; note "CARE dhp1 is in same cosmid" ; Alias "dph1" ; db_xref "SPD:16/16C12" ; synonym "ucp5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR276W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene name conflict; cv=warning; date=20100120 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; GO "GO:0005634; nucleus
GO:0031593; polyubiquitin binding
GO:0030433; ER-associated protein catabolism
GO:0042177; negative regulation of protein catabolism
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0030474; spindle pole body duplication" ; primary_name "dph1" ; product "UBA domain protein Dph1" ;
chromosome1 GeneDB CDS 3369743 3370807 . + . mRNA SPAC26A3.16 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3370808 3371298 . + . mRNA SPAC26A3.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.16" ; systematic_id "SPAC26A3.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3371353 3371408 . - . mRNA SPAC26A3.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26A3.17c" ; systematic_id "SPAC26A3.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3371409 3372482 . - . mRNA SPAC26A3.17c ; systematic_id "SPAC26A3.17c" ; colour "7" ; gene "SPAC26A3.17c ||| SPAC8E11.11" ; db_xref "SPD:16/16E10" ; synonym "SPAC8E11.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR465C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016274; protein-arginine N-methyltransferase activity
GO:0018216; peptidyl-arginine methylation
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0042254; ribosome biogenesis and assembly" ; product "N-methyltransferase (predicted)" ; EC_number "2.1.-.-" ;
chromosome1 GeneDB CDS 3371409 3372482 . - . mRNA SPAC26A3.17c ; colour "7" ;
chromosome1 GeneDB misc_feature 3372057 3372255 . - . misc_feature unknown_2768 ; note "nominal overlap with cosmid SPAC8E11, EM:AL021817 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 3372057 3372255 . + . misc_feature unknown_2769 ; note "nominal overlap with cosmid c26A3" ;
chromosome1 GeneDB 5'-UTR 3372481 3372507 . - . mRNA SPAC26A3.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26A3.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3372781 3373216 . - . mRNA SPAC8E11.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8E11.10" ; systematic_id "SPAC8E11.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3373217 3373984 . - . mRNA SPAC8E11.10 ; db_xref "SPD:09/09E05" ; systematic_id "SPAC8E11.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=related to S. pombe SPCC1739.08C and SPAC22A12.17C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0032115; sorbose reductase activity
GO:0019311; sorbose metabolic process" ; gene "SPAC8E11.10" ; product "sorbose reductase (predicted)" ; EC_number "1.1.1.289" ;
chromosome1 GeneDB CDS 3373217 3373984 . - . mRNA SPAC8E11.10 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3373983 3374209 . - . mRNA SPAC8E11.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8E11.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3374696 3375404 . + . misc_feature unknown_2770 ; note "previously annotated as dubious SPAC8E11.09c but no evidence for splicing, and non canonical splice sites, so removed" ;
chromosome1 GeneDB misc_feature 3374953 3374958 . + . misc_feature unknown_2771 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 3375516 3375818 . + . mRNA SPAC8E11.08c ; systematic_id "SPAC8E11.08c" ; colour "6" ; gene "SPAC8E11.08c" ; product "dubious" ;
chromosome1 GeneDB CDS 3375516 3375818 . + . mRNA SPAC8E11.08c ; colour "6" ;
chromosome1 GeneDB 5'-UTR 3377128 3377147 . + . mRNA SPAC8E11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8E11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3377148 3377722 . + . mRNA SPAC8E11.07c ; systematic_id "SPAC8E11.07c" ; colour "2" ; gene "alp31 ||| SPAC8E11.07c" ; Alias "alp31" ; db_xref "SPD:06/06B06" ; GO "GO:0030951; establishment and/or maintenance of microtubule cytoskeleton polarity
GO:0007023; post-chaperonin tubulin folding pathway
GO:0006457; beta-tubulin folding
GO:0048487; beta-tubulin binding
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10978278; date=19700101 ||| term=orthologous to S. cerevisiae YOR265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "alp31" ; product "tubulin specific chaperone cofactor A, Alp31" ;
chromosome1 GeneDB CDS 3377148 3377216 . + . mRNA SPAC8E11.07c ; colour "2" ;
chromosome1 GeneDB CDS 3377280 3377366 . + . mRNA SPAC8E11.07c ; colour "2" ;
chromosome1 GeneDB CDS 3377519 3377722 . + . mRNA SPAC8E11.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 3377217 3377222 . + . misc_feature unknown_2772 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3377259 3377279 . + . misc_feature unknown_2773 ; colour "6" ; note "ctgacctcaacaattgtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3377367 3377372 . + . misc_feature unknown_2774 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3377499 3377518 . + . misc_feature unknown_2775 ; colour "6" ; note "ctgacattctggacctctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3377723 3378008 . + . mRNA SPAC8E11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8E11.07c" ; systematic_id "SPAC8E11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3377901 3378094 . - . mRNA SPAC8E11.06 ; db_xref "SPD:01/01A09" ; systematic_id "SPAC8E11.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC8E11.06" ; product "sequence orphan" ; note "predicted from EST data" ;
chromosome1 GeneDB CDS 3377901 3377958 . - . mRNA SPAC8E11.06 ; colour "8" ;
chromosome1 GeneDB CDS 3378004 3378021 . - . mRNA SPAC8E11.06 ; colour "8" ;
chromosome1 GeneDB CDS 3378069 3378094 . - . mRNA SPAC8E11.06 ; colour "8" ;
chromosome1 GeneDB misc_feature 3377959 3377975 . - . misc_feature unknown_2776 ; colour "6" ; note "ctaactggcaaaattag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3377959 3378003 . - . intron SPAC8E11.06 ; db_xref "SPD:01/01A09" ; systematic_id "SPAC8E11.06" ; gene "SPAC8E11.06" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3377998 3378003 . - . misc_feature unknown_2777 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3378022 3378040 . - . misc_feature unknown_2778 ; colour "6" ; note "ctaaaatttaaatctctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3378063 3378068 . - . misc_feature unknown_2779 ; colour "6" ; note "gttgtt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3378225 3378271 . + . mRNA SPAC8E11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8E11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3378272 3379288 . + . mRNA SPAC8E11.05c ; db_xref "SPD:15/15B03" ; systematic_id "SPAC8E11.05c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to D. hansenii DEHA0B04004g; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC8E11.05c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 3378272 3379288 . + . mRNA SPAC8E11.05c ; colour "10" ;
chromosome1 GeneDB 3'-UTR 3379289 3380259 . + . mRNA SPAC8E11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8E11.05c" ; systematic_id "SPAC8E11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3380591 3380755 . + . mRNA SPAC8E11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8E11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3380756 3381781 . + . mRNA SPAC8E11.04c ; db_xref "SPD:15/15D06" ; systematic_id "SPAC8E11.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "7" ; GO "GO:0004620; phospholipase activity
GO:0044242; cellular lipid catabolic process" ; gene "SPAC8E11.04c" ; product "phospholipase (predicted)" ; note "orthologous to S. cerevisiae YLR118C; reciprocal best hit but possibly not ortholog due to probable lineage specific gene losses (is more divergent than higher eukaryotic orthologs)" ;
chromosome1 GeneDB CDS 3380756 3380828 . + . mRNA SPAC8E11.04c ; colour "7" ;
chromosome1 GeneDB CDS 3380900 3380984 . + . mRNA SPAC8E11.04c ; colour "7" ;
chromosome1 GeneDB CDS 3381096 3381143 . + . mRNA SPAC8E11.04c ; colour "7" ;
chromosome1 GeneDB CDS 3381199 3381344 . + . mRNA SPAC8E11.04c ; colour "7" ;
chromosome1 GeneDB CDS 3381459 3381781 . + . mRNA SPAC8E11.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 3380829 3380834 . + . misc_feature unknown_2780 ; colour "6" ; note "gtatga, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3380882 3380899 . + . misc_feature unknown_2781 ; colour "6" ; note "gtaacacatttatcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3380985 3380990 . + . misc_feature unknown_2782 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3381077 3381095 . + . misc_feature unknown_2783 ; colour "6" ; note "ctaattattttgtatatagtc, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3381144 3381149 . + . misc_feature unknown_2784 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3381184 3381198 . + . misc_feature unknown_2785 ; colour "6" ; note "ctaaaacttttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3381345 3381350 . + . misc_feature unknown_2786 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3381438 3381458 . + . misc_feature unknown_2787 ; colour "6" ; note "ctaactcgtcattttctctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3381782 3381859 . + . mRNA SPAC8E11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8E11.04c" ; systematic_id "SPAC8E11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3382284 3382331 . + . mRNA SPAC8E11.03c ; ID "SPAC8E11.03c" ; db_xref "SPD:16/16E09" ; systematic_id "SPAC8E11.03c" ; note "confirmed by AB008545" ;
chromosome1 GeneDB real_mRNA 3382284 3385575 . + . real_mRNA SPAC8E11.02c ; Alias "rad24" ; primary_name "rad24" ; gene "rad24 ||| SPAC8E11.02c" ; note "polycistronic mRNA from AB008545" ;
chromosome1 GeneDB CDS_parts 3382332 3383404 . + . mRNA SPAC8E11.03c ; systematic_id "SPAC8E11.03c" ; colour "2" ; db_xref "SPD:16/16E09" ; Alias "dmc1" ; synonym "dmp1" ; GO "GO:0000794; condensed nuclear chromosome
GO:0005524; ATP binding
GO:0003677; DNA binding
GO:0008094; DNA-dependent ATPase activity
GO:0003690; double-stranded DNA binding
GO:0000150; recombinase activity
GO:0003697; single-stranded DNA binding
GO:0006311; meiotic gene conversion
GO:0000709; meiotic joint molecule formation
GO:0007131; meiotic recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=RecA family; date=19700101 ||| term=helix-hairpin-helix; date=1970010 1 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=19700101 ||| term=genome organization, co- expressed with adjacent tandem gene; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YER179W; date=19700101 ||| term=disease associated, human infertility; db_xref=PMID:18566005; date=20080622 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20070321" ; primary_name "dmc1" ; product "RecA family ATPase Dmc1" ;
chromosome1 GeneDB CDS 3382332 3382404 . + . mRNA SPAC8E11.03c ; colour "2" ;
chromosome1 GeneDB CDS 3382479 3383404 . + . mRNA SPAC8E11.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 3382405 3382410 . + . misc_feature unknown_2788 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3382464 3382478 . + . misc_feature unknown_2789 ; colour "6" ; note "ctaacataatcaaag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 3384221 3384267 . + . mRNA SPAC8E11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8E11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3384268 3385487 . + . mRNA SPAC8E11.02c ; systematic_id "SPAC8E11.02c" ; colour "2" ; gene "rad24 ||| SPAC8E11.02c" ; Alias "rad24" ; db_xref "SPD:40/40D06" ; GO "GO:0032153; cell division site
GO:0005737; cytoplasm
GO:0051233; spindle midzone
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0004864; protein phosphatase inhibitor activity
GO:0000077; DNA damage checkpoint
GO:0031565; cytokinesis checkpoint
GO:0007126; meiosis
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0051038; negative regulation of transcription, meiotic
GO:0031031; positive regulation of septation initiation signaling
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; cv=phenotype; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:8036497; date=20101126 ||| term=orthologous to S. cerevisiae YDR099W and YER177W; date=19700101 ||| term=pathway, negative regulator of the Ras1-Byr2 signalling pathway, acting downstream of Ras1; db_xref=PMID:12242289; date=19700101 ||| term=target is Ste11; qualifier=phosphorylated_form; db_xref=PMID:11702950; date=20071120 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=genome organization, co- expressed with adjacent tandem gene; cv=genome_org; date=19700101" ; primary_name "rad24" ; product "14-3-3 protein Rad24" ;
chromosome1 GeneDB CDS 3384268 3384337 . + . mRNA SPAC8E11.02c ; colour "2" ;
chromosome1 GeneDB CDS 3384745 3385487 . + . mRNA SPAC8E11.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 3384338 3384343 . + . misc_feature unknown_2790 ; colour "6" ; note "gtatgt splice donor sequence" ;
chromosome1 GeneDB intron 3384338 3384744 . + . intron SPAC8E11.02c ; Alias "rad24" ; db_xref "SPD:40/40D06" ; systematic_id "SPAC8E11.02c" ; primary_name "rad24" ; gene "rad24 ||| SPAC8E11.02c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3384732 3384744 . + . misc_feature unknown_2791 ; note "ctaatatatccag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3385488 3385575 . + . mRNA SPAC8E11.02c ; Alias "rad24" ; ID "SPAC8E11.02c" ; db_xref "SPD:40/40D06 ||| EMBL:AB010899" ; systematic_id "SPAC8E11.02c" ; primary_name "rad24" ; gene "rad24 ||| SPAC8E11.02c" ;
chromosome1 GeneDB polyA_site 3385575 3385575 . + . mRNA SPAC8E11.02c ; temporary_systematic_id "SPAC8E11.02c" ; note "from AB010899" ;
chromosome1 GeneDB 5'-UTR 3385923 3386046 . + . mRNA SPAC8E11.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8E11.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3386047 3387573 . + . mRNA SPAC8E11.01c ; systematic_id "SPAC8E11.01c" ; colour "7" ; gene "SPAC8E11.01c ||| SPAC959.01" ; db_xref "SPD:24/24G07" ; synonym "SPAC959.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL162W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0004564; beta-fructofuranosidase activity
GO:0044275; cellular carbohydrate catabolism
GO:0034484; raffinose catabolic process
GO:0005987; sucrose catabolic process" ; product "beta-fructofuranosidase (predicted)" ; EC_number "3.2.1.26" ;
chromosome1 GeneDB CDS 3386047 3387573 . + . mRNA SPAC8E11.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 3387306 3387406 . + . misc_feature unknown_2792 ; note "nominal overlap with cosmid c8E11" ;
chromosome1 GeneDB 3'-UTR 3387574 3388070 . + . mRNA SPAC8E11.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8E11.01c" ; systematic_id "SPAC8E11.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3388232 3388240 . + . mRNA SPAC959.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC959.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3388241 3389327 . + . mRNA SPAC959.02 ; systematic_id "SPAC959.02" ; colour "7" ; gene "sec17 ||| SPAC959.02" ; Alias "sec17" ; db_xref "SPD:17/17A01" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0042144; vacuole fusion, non-autophagic
GO:0005483; soluble NSF attachment protein activity
; SNARE complex
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL050W; date=19700101 ||| term=human NAPA ortholog; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec17" ; product "alpha SNAP (predicted)" ;
chromosome1 GeneDB CDS 3388241 3388273 . + . mRNA SPAC959.02 ; colour "7" ;
chromosome1 GeneDB CDS 3388317 3388434 . + . mRNA SPAC959.02 ; colour "7" ;
chromosome1 GeneDB CDS 3388476 3388779 . + . mRNA SPAC959.02 ; colour "7" ;
chromosome1 GeneDB CDS 3388913 3389327 . + . mRNA SPAC959.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 3388274 3388279 . + . misc_feature unknown_2793 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB intron 3388274 3388316 . + . intron SPAC959.02 ; Alias "sec17" ; db_xref "SPD:17/17A01" ; systematic_id "SPAC959.02" ; primary_name "sec17" ; gene "sec17 ||| SPAC959.02" ; note "intron confirmed by homology but mRNA is unprocessed for this intron" ;
chromosome1 GeneDB misc_feature 3388304 3388316 . + . misc_feature unknown_2794 ; colour "6" ; note "ttaacatctctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3388435 3388440 . + . misc_feature unknown_2795 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome1 GeneDB intron 3388435 3388475 . + . intron SPAC959.02 ; Alias "sec17" ; db_xref "SPD:17/17A01" ; systematic_id "SPAC959.02" ; primary_name "sec17" ; gene "sec17 ||| SPAC959.02" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3388463 3388475 . + . misc_feature unknown_2796 ; colour "6" ; note "ctaacgtgtgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3388780 3388785 . + . misc_feature unknown_2797 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3388901 3388912 . + . misc_feature unknown_2798 ; colour "6" ; note "ctaacttgtcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3389328 3389716 . + . mRNA SPAC959.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC959.02" ; systematic_id "SPAC959.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3389716 3389827 . - . mRNA SPAC959.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC959.03c" ; systematic_id "SPAC959.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3389828 3391390 . - . mRNA SPAC959.03c ; db_xref "SPD:45/45B02" ; systematic_id "SPAC959.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER082C; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0030515; snoRNA binding" ; gene "SPAC959.03c" ; product "U3 snoRNP-associated protein Utp7 (predicted)" ;
chromosome1 GeneDB CDS 3389828 3391390 . - . mRNA SPAC959.03c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3391391 3391615 . - . mRNA SPAC959.03c ; ID "SPAC959.03c" ; systematic_id "SPAC959.03c" ; gene "SPAC959.03c" ; note "mRNA from AU014343" ;
chromosome1 GeneDB 5'-UTR 3392033 3392258 . + . mRNA SPAC959.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC959.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3392259 3392690 . + . mRNA SPAC959.10 ; systematic_id "SPAC959.10" ; colour "7" ; gene "SPAC959.10 ||| sen15" ; Alias "sen15" ; db_xref "SPD:52/52C07" ; GO "GO:0005741; mitochondrial outer membrane
GO:0000214; tRNA-intron endonuclease complex
GO:0000213; tRNA-intron endonuclease activity
GO:0000379; tRNA-type intron splice site recognition and cleavage" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR059W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sen15" ; product "tRNA-splicing endonuclease subunit Sen15 (predicted)" ;
chromosome1 GeneDB CDS 3392259 3392690 . + . mRNA SPAC959.10 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3392691 3392742 . + . mRNA SPAC959.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC959.10" ; systematic_id "SPAC959.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3392856 3392885 . - . mRNA SPAC959.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC959.04c" ; systematic_id "SPAC959.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3392886 3393949 . - . mRNA SPAC959.04c ; systematic_id "SPAC959.04c" ; colour "7" ; gene "SPAC959.04c" ; Alias "omh6" ; db_xref "SPD:16/16C10" ; GO "GO:0000139; Golgi membrane
GO:0000032; cell wall mannoprotein biosynthesis
GO:0035268; protein amino acid mannosylation
GO:0000026; alpha-1,2-mannosyltransferase activity" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, pear shaped; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100625 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "omh6" ; product "alpha-1,2-mannosyltransferase Omh6 (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB CDS 3392886 3393028 . - . mRNA SPAC959.04c ; colour "7" ;
chromosome1 GeneDB CDS 3393125 3393411 . - . mRNA SPAC959.04c ; colour "7" ;
chromosome1 GeneDB CDS 3393483 3393949 . - . mRNA SPAC959.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 3393029 3393043 . - . misc_feature unknown_2799 ; colour "6" ; note "ctgacatttatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3393119 3393124 . - . misc_feature unknown_2800 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3393412 3393428 . - . misc_feature unknown_2801 ; colour "6" ; note "ctaatatttttgttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3393477 3393482 . - . misc_feature unknown_2802 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3393948 3394341 . - . mRNA SPAC959.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC959.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snoRNA 3394875 3395200 . + . snoRNA SPSNORNA.20 ; systematic_id "SPSNORNA.20" ; db_xref "EMBL:AJ544685" ; Alias "snR30" ; synonym "snoU17" ; GO "GO:0031429; box H/ACA snoRNP complex
GO:0006364; rRNA processing
GO:0042134; rRNA primary transcript binding" ; controlled_curation "term=orthologous to S. cerevisiae snR30; date=20100122" ; primary_name "snR30" ; product "small nucleolar RNA U17" ;
chromosome1 GeneDB 3'-UTR 3395217 3395684 . - . mRNA SPAC959.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC959.05c" ; systematic_id "SPAC959.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3395685 3398701 . - . mRNA SPAC959.05c ; systematic_id "SPAC959.05c" ; colour "7" ; gene "SPAC959.06c ||| SPAC959.05c" ; note "gene stucture updated ||| merged SPAC959.06c & SPAC959.05c, pers. comm. Charly Chahwan, splicing is tentative" ; Alias "SPAC959.06c" ; obsolete_name "SPAC959.06c" ; db_xref "SPD:36/36A05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=thioredoxin family; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0003756; protein disulfide isomerase activity
GO:0006621; protein retention in ER" ; primary_name "SPAC959.06c" ; product "protein disulfide isomerase (predicted)" ;
chromosome1 GeneDB CDS 3395685 3397327 . - . mRNA SPAC959.05c ; colour "7" ;
chromosome1 GeneDB CDS 3397383 3397579 . - . mRNA SPAC959.05c ; colour "7" ;
chromosome1 GeneDB CDS 3397681 3397852 . - . mRNA SPAC959.05c ; colour "7" ;
chromosome1 GeneDB CDS 3398029 3398701 . - . mRNA SPAC959.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 3397328 3397339 . - . misc_feature unknown_2803 ; colour "6" ; note "ttaacaatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3397377 3397382 . - . misc_feature unknown_2804 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_RNA 3398737 3398938 . + . misc_RNA SPNCRNA.381 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.381" ; synonym "SPNG641" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| possible UTR for SPAC959.06c" ;
chromosome1 GeneDB 5'-UTR 3399236 3399255 . + . mRNA SPAC959.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC959.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3399256 3400044 . + . mRNA SPAC959.07 ; systematic_id "SPAC959.07" ; colour "7" ; gene "rps403 ||| rps4-3 ||| rps4 ||| SPAC959.07" ; Alias "rps403" ; db_xref "SPD:09/09H06" ; synonym "rps4-3 ||| rps4" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR145C and YHR203C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; protein biosynthesis
GO:0003735; structural constituent of ribosome" ; primary_name "rps403" ; product "40S ribosomal protein S4 (predicted)" ;
chromosome1 GeneDB CDS 3399256 3400044 . + . mRNA SPAC959.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3400045 3400116 . + . mRNA SPAC959.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC959.07" ; systematic_id "SPAC959.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3400542 3401024 . + . mRNA SPAC959.08 ; systematic_id "SPAC959.08" ; colour "7" ; gene "rpl2102 ||| rpl21-2 ||| rpl21 ||| SPAC959.08" ; Alias "rpl2102" ; db_xref "SPD:04/04E01" ; synonym "rpl21-2 ||| rpl21" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR191W and YPL079W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl2102" ; product "60S ribosomal protein L21 (predicted)" ;
chromosome1 GeneDB CDS 3400542 3401024 . + . mRNA SPAC959.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3401025 3401053 . + . mRNA SPAC959.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC959.08" ; systematic_id "SPAC959.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3401279 3403970 . - . mRNA SPAC959.09c ; systematic_id "SPAC959.09c" ; colour "2" ; gene "apc5 ||| SPAP32A8.01c ||| SPAC959.09c" ; Alias "apc5" ; db_xref "SPD:49/49F01" ; synonym "SPAP32A8.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR249C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008054; cyclin catabolism
GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0005515; protein binding" ; primary_name "apc5" ; product "anaphase-promoting complex subunit Apc5" ;
chromosome1 GeneDB CDS 3401279 3401424 . - . mRNA SPAC959.09c ; colour "2" ;
chromosome1 GeneDB CDS 3401471 3401771 . - . mRNA SPAC959.09c ; colour "2" ;
chromosome1 GeneDB CDS 3401818 3401913 . - . mRNA SPAC959.09c ; colour "2" ;
chromosome1 GeneDB CDS 3401961 3402087 . - . mRNA SPAC959.09c ; colour "2" ;
chromosome1 GeneDB CDS 3402138 3402905 . - . mRNA SPAC959.09c ; colour "2" ;
chromosome1 GeneDB CDS 3402956 3403049 . - . mRNA SPAC959.09c ; colour "2" ;
chromosome1 GeneDB CDS 3403136 3403195 . - . mRNA SPAC959.09c ; colour "2" ;
chromosome1 GeneDB CDS 3403240 3403576 . - . mRNA SPAC959.09c ; colour "2" ;
chromosome1 GeneDB CDS 3403625 3403729 . - . mRNA SPAC959.09c ; colour "2" ;
chromosome1 GeneDB CDS 3403791 3403970 . - . mRNA SPAC959.09c ; colour "2" ;
chromosome1 GeneDB misc_feature 3401425 3401439 . - . misc_feature unknown_2805 ; colour "6" ; note "ctaatgattaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3401465 3401470 . - . misc_feature unknown_2806 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3401772 3401788 . - . misc_feature unknown_2807 ; colour "6" ; note "ctaatgtgagtgtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3401812 3401817 . - . misc_feature unknown_2808 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3401914 3401929 . - . misc_feature unknown_2809 ; colour "6" ; note "ctaaacgtgttactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3401955 3401960 . - . misc_feature unknown_2810 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3402088 3402101 . - . misc_feature unknown_2811 ; colour "6" ; note "ctaattttgaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3402132 3402137 . - . misc_feature unknown_2812 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3402250 3402350 . + . misc_feature unknown_2813 ; note "nominal overlap with SPAC959 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 3402906 3402918 . - . misc_feature unknown_2814 ; colour "6" ; note "ctaacatactaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3402950 3402955 . - . misc_feature unknown_2815 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3403050 3403062 . - . misc_feature unknown_2816 ; colour "6" ; note "ctgatttacgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3403130 3403135 . - . misc_feature unknown_2817 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3403196 3403208 . - . misc_feature unknown_2818 ; colour "6" ; note "ctaacttttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3403234 3403239 . - . misc_feature unknown_2819 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3403577 3403594 . - . misc_feature unknown_2820 ; colour "6" ; note "ctaacaactttgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3403619 3403624 . - . misc_feature unknown_2821 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3403730 3403747 . - . misc_feature unknown_2822 ; colour "6" ; note "ctaactgtatatctctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3403785 3403790 . - . misc_feature unknown_2823 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3403969 3404127 . - . mRNA SPAC959.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC959.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 3405117 3405938 . + . misc_RNA SPNCRNA.221 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.221" ; synonym "SPNG645" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008 ||| term=warning, dubious; cv=warning; date=20100204" ; product "dubious" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 3406215 3407066 . + . mRNA SPAP32A8.02 ; systematic_id "SPAP32A8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "7" ; GO "GO:0042843; D-xylose catabolism
GO:0019568; arabinose catabolism
GO:0032866; xylose reductase activity
GO:0032867; arabinose reductase activity" ; gene "SPAP32A8.02" ; product "xylose and arabinose reductase (predicted)" ;
chromosome1 GeneDB CDS 3406215 3407066 . + . mRNA SPAP32A8.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3407654 3407824 . - . mRNA SPAP32A8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP32A8.03c" ; systematic_id "SPAP32A8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3407825 3409525 . - . mRNA SPAP32A8.03c ; systematic_id "SPAP32A8.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human RNF126 ortholog; date=20070913 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAP32A8.03c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB CDS 3407825 3409267 . - . mRNA SPAP32A8.03c ; colour "7" ;
chromosome1 GeneDB CDS 3409427 3409525 . - . mRNA SPAP32A8.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 3409268 3409282 . - . misc_feature unknown_2824 ; colour "6" ; note "ttaacatttgtgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3409421 3409426 . - . misc_feature unknown_2825 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3409524 3409574 . - . mRNA SPAP32A8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP32A8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3410290 3410391 . + . misc_feature unknown_2826 ; note "nominal overlap with cosmid c3H5" ;
chromosome1 GeneDB promoter 3410890 3410897 . + . promoter unknown_2827 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB CDS_parts 3410951 3411835 . + . mRNA SPAC3H5.12c ; systematic_id "SPAC3H5.12c" ; colour "7" ; gene "rpl501 ||| rpl5-1 ||| rpl5 ||| SPAC3H5.12c" ; Alias "rpl501" ; synonym "rpl5-1 ||| rpl5" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL131W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl501" ; product "60S ribosomal protein L5 (predicted)" ;
chromosome1 GeneDB CDS 3410951 3411835 . + . mRNA SPAC3H5.12c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3412288 3412526 . + . mRNA SPAC3H5.13 ; db_xref "PMID:21270388" ; systematic_id "SPAC3H5.13" ;
chromosome1 GeneDB CDS_parts 3412527 3413053 . + . mRNA SPAC3H5.13 ; Alias "new4" ; systematic_id "SPAC3H5.13" ; controlled_curation "term=conserved in Eukaryotes; date=20100419 ||| term=conserved in Eukaryotes only; date=20100419 ||| term=conserved in Metazoa; date=20100419 ||| term=conserved in Vertebrates; date=20100419 ||| term=conserved in Fungi; date=20100419 ||| term=no apparent S. cerevisiae ortholog; date=20100419 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "10" ; primary_name "new4" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB CDS 3412527 3412569 . + . mRNA SPAC3H5.13 ; colour "10" ;
chromosome1 GeneDB CDS 3412610 3412731 . + . mRNA SPAC3H5.13 ; colour "10" ;
chromosome1 GeneDB CDS 3412778 3413053 . + . mRNA SPAC3H5.13 ; colour "10" ;
chromosome1 GeneDB intron 3412570 3412609 . + . intron unknown_2828 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome1 GeneDB intron 3412732 3412777 . + . intron unknown_2829 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome1 GeneDB 3'-UTR 3413054 3413566 . + . mRNA SPAC3H5.13 ; db_xref "PMID:21270388" ; systematic_id "SPAC3H5.13" ;
chromosome1 GeneDB CDS_parts 3413139 3414496 . - . mRNA SPAC3H5.11 ; db_xref "SPD:50/50F03" ; systematic_id "SPAC3H5.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL041W and YJR049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0003951; NAD+ kinase activity
GO:0019674; NAD metabolism" ; gene "SPAC3H5.11" ; product "NAD/NADH kinase (predicted)" ;
chromosome1 GeneDB CDS 3413139 3413295 . - . mRNA SPAC3H5.11 ; colour "7" ;
chromosome1 GeneDB CDS 3413369 3413520 . - . mRNA SPAC3H5.11 ; colour "7" ;
chromosome1 GeneDB CDS 3413571 3414238 . - . mRNA SPAC3H5.11 ; colour "7" ;
chromosome1 GeneDB CDS 3414292 3414496 . - . mRNA SPAC3H5.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 3413296 3413310 . - . misc_feature unknown_2830 ; note "ctaacattttcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3413363 3413368 . - . misc_feature unknown_2831 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3413521 3413535 . - . misc_feature unknown_2832 ; note "ctaactatatactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3413565 3413570 . - . misc_feature unknown_2833 ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3414239 3414254 . - . misc_feature unknown_2834 ; note "ctaatacgacgattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3414286 3414291 . - . misc_feature unknown_2835 ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3414495 3414631 . - . mRNA SPAC3H5.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H5.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3415567 3415657 . - . mRNA SPAC3H5.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H5.10" ; systematic_id "SPAC3H5.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB polyA_site 3415610 3415610 . - . mRNA SPAC3H5.10 ; temporary_systematic_id "SPAC3H5.10" ; note "poly A site" ;
chromosome1 GeneDB CDS_parts 3415658 3416041 . - . mRNA SPAC3H5.10 ; systematic_id "SPAC3H5.10" ; colour "7" ; gene "rpl3202 ||| rpl32-2 ||| rpl32 ||| SPAC3H5.10" ; Alias "rpl3202" ; db_xref "SPD:41/41B04" ; synonym "rpl32-2 ||| rpl32" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL092W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl3202" ; product "60S ribosomal protein L32 (predicted)" ;
chromosome1 GeneDB CDS 3415658 3416041 . - . mRNA SPAC3H5.10 ; colour "7" ;
chromosome1 GeneDB promoter 3416099 3416106 . - . promoter unknown_2836 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB 5'-UTR 3416618 3416763 . + . mRNA SPAC3H5.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H5.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3416764 3424821 . + . mRNA SPAC3H5.09c ; db_xref "SPD:51/51F02" ; systematic_id "SPAC3H5.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR454W and YPR117W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human KIAA0100 ortholog; date=20100718" ; GO "GO:0005739; mitochondrion" ; colour "10" ; gene "SPAC3H5.09c" ; product "conserved eukaryotic mitochondrial protein (predicted)" ;
chromosome1 GeneDB CDS 3416764 3424821 . + . mRNA SPAC3H5.09c ; colour "10" ;
chromosome1 GeneDB 3'-UTR 3424822 3424974 . + . mRNA SPAC3H5.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H5.09c" ; systematic_id "SPAC3H5.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3425907 3426305 . + . mRNA SPAC3H5.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H5.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3425966 3428910 . + . misc_feature SPAC3H5.08c ; db_xref "SPD:49/49E11" ; systematic_id "SPAC3H5.08c" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR102C and YKL121W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "6" ; gene "SPAC3H5.08c" ; product "WD repeat protein, human WDR44 family" ;
chromosome1 GeneDB CDS_parts 3426306 3428910 . + . mRNA SPAC3H5.08c ; db_xref "SPD:49/49E11" ; systematic_id "SPAC3H5.08c" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR102C and YKL121W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human WDR44 ortholog; date=20100622" ; colour "10" ; gene "SPAC3H5.08c" ; product "WD repeat protein, human WDR44 family" ;
chromosome1 GeneDB CDS 3426306 3428390 . + . mRNA SPAC3H5.08c ; colour "10" ;
chromosome1 GeneDB CDS 3428428 3428910 . + . mRNA SPAC3H5.08c ; colour "10" ;
chromosome1 GeneDB misc_feature 3428391 3428396 . + . misc_feature unknown_2837 ; note "gtaaga, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3428416 3428427 . + . misc_feature unknown_2838 ; note "ctaattttttag, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3429652 3429716 . - . mRNA SPAC3H5.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H5.07" ; systematic_id "SPAC3H5.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3429717 3430760 . - . mRNA SPAC3H5.07 ; systematic_id "SPAC3H5.07" ; colour "2" ; gene "rpl702 ||| rpl7-2 ||| rpl7 ||| rpl7b ||| SPAC3H5.07" ; Alias "rpl702" ; db_xref "SPD:49/49A02" ; synonym "rpl7-2 ||| rpl7 ||| rpl7b" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL076C and YPL198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl702" ; product "60S ribosomal protein L7" ;
chromosome1 GeneDB CDS 3429717 3430343 . - . mRNA SPAC3H5.07 ; colour "2" ;
chromosome1 GeneDB CDS 3430635 3430760 . - . mRNA SPAC3H5.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 3430344 3430358 . - . misc_feature unknown_2839 ; note "ctaattcaaacctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3430344 3430634 . - . intron SPAC3H5.07 ; Alias "rpl702" ; db_xref "SPD:49/49A02" ; systematic_id "SPAC3H5.07" ; primary_name "rpl702" ; gene "rpl702 ||| rpl7-2 ||| rpl7 ||| rpl7b ||| SPAC3H5.07" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3430629 3430634 . - . misc_feature unknown_2840 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB promoter 3430814 3430821 . - . promoter unknown_2841 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB promoter 3430830 3430839 . - . promoter unknown_2842 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB 5'-UTR 3430970 3431088 . + . mRNA SPAC3H5.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H5.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3431089 3435397 . + . mRNA SPAC3H5.06c ; systematic_id "SPAC3H5.06c" ; colour "2" ; db_xref "SPD:49/49H03" ; Alias "pol1" ; synonym "swi7 ||| polA" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, N syndrome; date=20060926 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8537450; date=19700101 ||| term=orthologous to S. cerevisiae YNL102W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=complementation, functionally complemented by S. cerevisiae YNL102W; db_xref=PMID:8537450; date=20100923" ; GO "GO:0005658; alpha DNA polymerase:primase complex
GO:0043596; nuclear replication fork
GO:0003688; DNA replication origin binding
GO:0003887; DNA-directed DNA polymerase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0006269; DNA replication, synthesis of RNA primer
GO:0000734; gene conversion at mating-type locus, DNA repair synthesis
GO:0000723; telomere maintenance" ; primary_name "pol1" ; product "DNA polymerase alpha catalytic subunit" ; EC_number "2.7.7.7" ;
chromosome1 GeneDB CDS 3431089 3431389 . + . mRNA SPAC3H5.06c ; colour "2" ;
chromosome1 GeneDB CDS 3431481 3435397 . + . mRNA SPAC3H5.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 3431390 3431395 . + . misc_feature unknown_2843 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3431466 3431480 . + . misc_feature unknown_2844 ; note "ctaacagtaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3435398 3435917 . + . mRNA SPAC3H5.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H5.06c" ; systematic_id "SPAC3H5.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 3436176 3436185 . + . promoter unknown_2845 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB promoter 3436189 3436195 . + . promoter unknown_2846 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB 5'-UTR 3436248 3436286 . + . mRNA SPAC3H5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3436287 3436706 . + . mRNA SPAC3H5.05c ; systematic_id "SPAC3H5.05c" ; colour "7" ; gene "rps1401 ||| rps14-1 ||| rps14 ||| SPAC3H5.05c" ; Alias "rps1401" ; db_xref "SPD:41/41B08" ; synonym "rps14-1 ||| rps14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR031C and YJL191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0042254; ribosome biogenesis" ; primary_name "rps1401" ; product "40S ribosomal protein S14 (predicted)" ;
chromosome1 GeneDB CDS 3436287 3436706 . + . mRNA SPAC3H5.05c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3436707 3436797 . + . mRNA SPAC3H5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3H5.05c" ; systematic_id "SPAC3H5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3437021 3438061 . - . mRNA SPAC3H5.04 ; systematic_id "SPAC3H5.04" ; colour "7" ; gene "aar2 ||| SPAC3H5.04" ; Alias "aar2" ; db_xref "SPD:49/49A01" ; GO "GO:0000244; assembly of spliceosomal tri-snRNP
GO:0005682; snRNP U5" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "aar2" ; product "U5 snRNP-associated protein Aar2 (predicted)" ;
chromosome1 GeneDB CDS 3437021 3438061 . - . mRNA SPAC3H5.04 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3438060 3438117 . - . mRNA SPAC3H5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3H5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 3438221 3438576 . - . LTR unknown_2847 ; colour "4" ; note "degraded tf1 type ltr" ;
chromosome1 GeneDB 5'-UTR 3438908 3438932 . + . mRNA SPAC3A11.14c ; Alias "pkl1" ; ID "SPAC3A11.14c" ; db_xref "EMBL:U63916" ; systematic_id "SPAC3A11.14c" ; primary_name "pkl1" ;
chromosome1 GeneDB CDS_parts 3438933 3441651 . + . mRNA SPAC3A11.14c ; systematic_id "SPAC3A11.14c" ; colour "2" ; db_xref "SPD:49/49F02" ; Alias "pkl1" ; synonym "klp1 ||| SPAC3H5.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kinesin Kar3 subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11694582; date=19700101 ||| term=orthologous to S. cerevisiae YPR141C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=complementation, functionally complemented by human HSET; db_xref=PMID:19838064; date=20100121 ||| term=protein sequence feature, NLS; residue=29-38; db_xref=PMID:19838064; date=20100121 ||| term=phenotype, spindle polarity defects; allele=P-ND149|P-ND95|P-ND60; db_xref=PMID:19838064; cv=phenotype; date=20100121 ||| term=phenotype, localization defective, cytoplasmic; allele=P-ND149|P-ND95|P-ND60; db_xref=PMID:19838064; cv=phenotype; date=20100121 ||| term=kinesin-14 family; db_xref=PMID:19838064; date=20100121 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0005875; microtubule associated complex
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0043015; gamma-tubulin binding
GO:0008017; microtubule binding
GO:0008017; microtubule binding
GO:0008569; minus-end-directed microtubule motor activity
GO:0034613; cellular protein localization
GO:0000741; karyogamy
GO:0007019; microtubule depolymerization
GO:0007019; microtubule depolymerization
GO:0007018; microtubule-based movement
GO:0000070; mitotic chromosome segregation
GO:0032888; regulation of mitotic spindle elongation
GO:0031134; sister chromatid biorientation
GO:0090307; spindle assembly involved in mitosis" ; primary_name "pkl1" ; product "kinesin-like protein Pkl1" ;
chromosome1 GeneDB CDS 3438933 3438944 . + . mRNA SPAC3A11.14c ; colour "2" ;
chromosome1 GeneDB CDS 3438987 3439620 . + . mRNA SPAC3A11.14c ; colour "2" ;
chromosome1 GeneDB CDS 3439674 3441361 . + . mRNA SPAC3A11.14c ; colour "2" ;
chromosome1 GeneDB CDS 3441487 3441651 . + . mRNA SPAC3A11.14c ; colour "2" ;
chromosome1 GeneDB misc_feature 3438945 3438950 . + . misc_feature unknown_2848 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3438975 3438986 . + . misc_feature unknown_2849 ; note "ttaatgcgaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3439621 3439626 . + . misc_feature unknown_2850 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3439659 3439673 . + . misc_feature unknown_2851 ; note "ctaactattttaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_RNA 3440092 3441229 . - . misc_RNA SPNCRNA.561 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.561" ; synonym "SPNG2AF3" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB misc_feature 3441307 3444573 . - . misc_feature unknown_2852 ; note "nominal overlap with cosmid SPAC3H5, EM:Z99296 S.pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 3441362 3441367 . + . misc_feature unknown_2853 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3441472 3441486 . + . misc_feature unknown_2854 ; colour "6" ; note "ctaaccagacattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3441613 3441686 . - . mRNA SPAC3A11.13 ; Alias "pkl1" ; ID "SPAC3A11.13" ; db_xref "SPD:06/06F10" ; systematic_id "SPAC3A11.13" ; primary_name "pkl1" ; note "mRNA from AU012436" ;
chromosome1 GeneDB 3'-UTR 3441652 3442082 . + . mRNA SPAC3A11.14c ; Alias "pkl1" ; ID "SPAC3A11.14c" ; db_xref "EMBL:U63916 ||| SPD:49/49F02" ; systematic_id "SPAC3A11.14c" ; primary_name "pkl1" ;
chromosome1 GeneDB CDS_parts 3441687 3442287 . - . mRNA SPAC3A11.13 ; db_xref "SPD:06/06F10" ; systematic_id "SPAC3A11.13" ; synonym "SPAC3H5.02" ; colour "7" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR200W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "prefoldin subunit 6 (predicted)" ;
chromosome1 GeneDB CDS 3441687 3441795 . - . mRNA SPAC3A11.13 ; colour "7" ;
chromosome1 GeneDB CDS 3441924 3442048 . - . mRNA SPAC3A11.13 ; colour "7" ;
chromosome1 GeneDB CDS 3442127 3442197 . - . mRNA SPAC3A11.13 ; colour "7" ;
chromosome1 GeneDB CDS 3442248 3442287 . - . mRNA SPAC3A11.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 3441796 3441812 . - . misc_feature unknown_2855 ; colour "6" ; note "ttaattcataattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3441796 3441815 . - . misc_feature unknown_2856 ; note "ttattaattcataattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3441918 3441923 . - . misc_feature unknown_2857 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3442049 3442062 . - . misc_feature unknown_2858 ; note "ttaatgcgaattag, splice branch and acceptor" ;
chromosome1 GeneDB polyA_site 3442078 3442082 . + . mRNA SPAC3A11.14c ; temporary_systematic_id "SPAC3A11.14c" ; colour "5" ; note "polyA attachment site" ;
chromosome1 GeneDB misc_feature 3442121 3442126 . - . misc_feature unknown_2859 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3442198 3442214 . - . misc_feature unknown_2860 ; note "ttaacgaaattcccaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3442242 3442247 . - . misc_feature unknown_2861 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3442286 3442297 . - . mRNA SPAC3A11.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A11.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 3443055 3443144 . + . tRNA SPATRNAARG.01 ; systematic_id "SPATRNAARG.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033424; CCG codon-amino acid adaptor activity" ; gene "SPATRNAARG.01" ; product "tRNA Arginine" ; note "tRNA Arg anticodon CCG, Cove score 40.63" ;
chromosome1 GeneDB intron 3443091 3443108 . + . intron SPATRNAARG.01 ; systematic_id "SPATRNAARG.01" ; note "intron tRNA Arg anticodon CCG" ;
chromosome1 GeneDB CDS_parts 3443944 3445445 . + . mRNA SPAC3A11.12c ; systematic_id "SPAC3A11.12c" ; colour "7" ; gene "rpt5 ||| pam2 ||| tbp1 ||| SPAC3A11.12c" ; Alias "rpt5" ; db_xref "SPD:24/24D01" ; obsolete_name "SPAC3H5.01c ||| tbp1" ; synonym "pam2 ||| tbp1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YOR117W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0004175; endopeptidase activity
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; primary_name "rpt5" ; product "19S proteasome regulatory subunit Rpt5 (predicted)" ;
chromosome1 GeneDB CDS 3443944 3444096 . + . mRNA SPAC3A11.12c ; colour "7" ;
chromosome1 GeneDB CDS 3444282 3445445 . + . mRNA SPAC3A11.12c ; colour "7" ;
chromosome1 GeneDB misc_feature 3444097 3444102 . + . misc_feature unknown_2862 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3444266 3444281 . + . misc_feature unknown_2863 ; note "ctaacatagattgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3445446 3445981 . + . mRNA SPAC3A11.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A11.12c" ; systematic_id "SPAC3A11.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3446366 3446507 . + . mRNA SPAC3A11.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A11.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3446508 3447512 . + . mRNA SPAC3A11.11c ; db_xref "SPD:14/14G09" ; systematic_id "SPAC3A11.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPAC9E9.11; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC3A11.11c" ; product "pyridoxal reductase (predicted)" ;
chromosome1 GeneDB CDS 3446508 3447512 . + . mRNA SPAC3A11.11c ; colour "10" ;
chromosome1 GeneDB 3'-UTR 3447513 3447964 . + . mRNA SPAC3A11.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A11.11c" ; systematic_id "SPAC3A11.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3448352 3448363 . + . mRNA SPAC3A11.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A11.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3448364 3449593 . + . mRNA SPAC3A11.10c ; db_xref "SPD:19/19E11" ; systematic_id "SPAC3A11.10c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPAC3A11.10c" ; product "dipeptidyl peptidase (predicted)" ; EC_number "3.4.13.19" ;
chromosome1 GeneDB CDS 3448364 3449593 . + . mRNA SPAC3A11.10c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3449594 3449837 . + . mRNA SPAC3A11.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A11.10c" ; systematic_id "SPAC3A11.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3449835 3450113 . - . mRNA SPAC3A11.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A11.09" ; systematic_id "SPAC3A11.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3450114 3452608 . - . mRNA SPAC3A11.09 ; systematic_id "SPAC3A11.09" ; colour "2" ; gene "sod22 ||| SPAC3A11.09" ; Alias "sod22" ; db_xref "SPD:29/29A05" ; GO "GO:0071435; potassium ion export
GO:0015992; proton transport
GO:0071436; sodium ion export
GO:0005886; plasma membrane
GO:0015079; potassium ion transporter activity
GO:0015385; sodium:hydrogen antiporter activity
GO:0030007; potassium ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR138W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sod22" ; product "plasma membrane alkali metal cation/H+ antiporter Sod22" ;
chromosome1 GeneDB CDS 3450114 3452269 . - . mRNA SPAC3A11.09 ; colour "2" ;
chromosome1 GeneDB CDS 3452485 3452608 . - . mRNA SPAC3A11.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 3452270 3452283 . - . misc_feature unknown_2864 ; colour "6" ; note "ctaacttaatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3452479 3452484 . - . misc_feature unknown_2865 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3452607 3452805 . - . mRNA SPAC3A11.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A11.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3452965 3453055 . + . mRNA SPAC3A11.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A11.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3453056 3455260 . + . mRNA SPAC3A11.08 ; systematic_id "SPAC3A11.08" ; colour "2" ; gene "pcu4 ||| cul4 ||| Cul-4 ||| SPAC3A11.08" ; Alias "pcu4" ; db_xref "SPD:37/37H12" ; synonym "cul4 ||| Cul-4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10880460; date=20100708 ||| term=phenotype, chromosome condensation defects; qualifier=deletion; db_xref=PMID:10880460; date=20100708 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=deletion; db_xref=PMID:12695334; date=20100730 ||| term=modification, neddylated; cv=pt_mod; date=20060517 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Spd1; db_xref=PMID:12695334; date=20100823" ; GO "GO:0043494; Rik1-E3 ubiquitin ligase complex
GO:0031618; nuclear centric heterochromatin
GO:0005634; nucleus
GO:0008180; signalosome complex
GO:0004842; ubiquitin-protein ligase activity
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0000070; mitotic sister chromatid segregation
GO:0007535; donor selection
GO:0031507; heterochromatin formation
GO:0032876; negative regulation of DNA endoreduplication
GO:0032876; negative regulation of DNA endoreduplication
GO:0008156; negative regulation of DNA replication
GO:0045836; positive regulation of meiosis
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0051570; regulation of histone H3-K9 methylation
GO:0031060; regulation of histone methylation
GO:0006974; response to DNA damage stimulus
GO:0031048; small RNA-mediated chromatin silencing
GO:0006283; transcription-coupled nucleotide- excision repair" ; primary_name "pcu4" ; product "cullin 4" ;
chromosome1 GeneDB CDS 3453056 3455260 . + . mRNA SPAC3A11.08 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3455261 3455556 . + . mRNA SPAC3A11.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A11.08" ; systematic_id "SPAC3A11.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3456707 3457272 . + . mRNA SPAC3A11.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A11.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3457273 3458928 . + . mRNA SPAC3A11.07 ; db_xref "SPD:34/34G01" ; systematic_id "SPAC3A11.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR145C and YDL085W and YML120C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; colour "7" ; GO "GO:0006116; NADH oxidation
GO:0003954; NADH dehydrogenase activity
GO:0005743; mitochondrial inner membrane" ; gene "SPAC3A11.07" ; product "NADH dehydrogenase (predicted)" ;
chromosome1 GeneDB CDS 3457273 3458928 . + . mRNA SPAC3A11.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3458929 3459015 . + . mRNA SPAC3A11.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A11.07" ; systematic_id "SPAC3A11.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3459233 3461859 . - . mRNA SPAC3A11.06 ; systematic_id "SPAC3A11.06" ; colour "7" ; gene "mvp1 ||| SPAC3A11.06" ; Alias "mvp1" ; db_xref "SPD:38/38F12" ; GO "GO:0035091; phosphoinositide binding
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0006623; protein targeting to vacuole" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mvp1" ; product "sorting nexin Mvp1 (predicted)" ;
chromosome1 GeneDB CDS 3459233 3459436 . - . mRNA SPAC3A11.06 ; colour "7" ;
chromosome1 GeneDB CDS 3459492 3459665 . - . mRNA SPAC3A11.06 ; colour "7" ;
chromosome1 GeneDB CDS 3459705 3459897 . - . mRNA SPAC3A11.06 ; colour "7" ;
chromosome1 GeneDB CDS 3459941 3460185 . - . mRNA SPAC3A11.06 ; colour "7" ;
chromosome1 GeneDB CDS 3460234 3460364 . - . mRNA SPAC3A11.06 ; colour "7" ;
chromosome1 GeneDB CDS 3460425 3460442 . - . mRNA SPAC3A11.06 ; colour "7" ;
chromosome1 GeneDB CDS 3460508 3460560 . - . mRNA SPAC3A11.06 ; colour "7" ;
chromosome1 GeneDB CDS 3460642 3461263 . - . mRNA SPAC3A11.06 ; colour "7" ;
chromosome1 GeneDB CDS 3461323 3461583 . - . mRNA SPAC3A11.06 ; colour "7" ;
chromosome1 GeneDB CDS 3461766 3461859 . - . mRNA SPAC3A11.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 3459437 3459451 . - . misc_feature unknown_2866 ; colour "6" ; note "ttaacgaatatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3459486 3459491 . - . misc_feature unknown_2867 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3459666 3459677 . - . misc_feature unknown_2868 ; colour "6" ; note "ctaataccttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3459699 3459704 . - . misc_feature unknown_2869 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3459898 3459913 . - . misc_feature unknown_2870 ; colour "6" ; note "ctaatccttttcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3459935 3459940 . - . misc_feature unknown_2871 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3460186 3460207 . - . misc_feature unknown_2872 ; colour "6" ; note "ctaattgctctcatgaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3460228 3460233 . - . misc_feature unknown_2873 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3460365 3460386 . - . misc_feature unknown_2874 ; colour "6" ; note "ctaatatatgtcagttgcgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3460419 3460424 . - . misc_feature unknown_2875 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3460443 3460455 . - . misc_feature unknown_2876 ; colour "6" ; note "ctaattcttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3460502 3460507 . - . misc_feature unknown_2877 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3460561 3460576 . - . misc_feature unknown_2878 ; colour "6" ; note "ctaactagttcgaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3460636 3460641 . - . misc_feature unknown_2879 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3461264 3461282 . - . misc_feature unknown_2880 ; colour "6" ; note "cttacttcctcctccttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3461317 3461322 . - . misc_feature unknown_2881 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3461584 3461617 . - . misc_feature unknown_2882 ; colour "6" ; note "ctaacctttttctttttcttttttttgtctatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3461760 3461765 . - . misc_feature unknown_2883 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3461858 3462098 . - . mRNA SPAC3A11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3462920 3463064 . + . mRNA SPAC3A11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3463065 3465065 . + . mRNA SPAC3A11.05c ; systematic_id "SPAC3A11.05c" ; colour "2" ; gene "kms1 ||| SPAC3A11.05c" ; Alias "kms1" ; db_xref "SPD:33/33F01" ; GO "GO:0034993; SUN-KASH complex
GO:0016020; membrane
GO:0031965; nuclear membrane
; spindle pole body
GO:0000742; karyogamy during conjugation with cellular fusion
GO:0006997; nuclear organization and biogenesis
GO:0045141; telomere clustering" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, Karyogamy Meiotic Segregation protein; cv=name_description; date=20091127 ||| term=KASH domain protein; qualifier=predicted; date=20091127 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, recombination defects; db_xref=PMID:9150257; date=20101018" ; primary_name "kms1" ; product "meiotic spindle pole body protein Kms1" ;
chromosome1 GeneDB CDS 3463065 3463127 . + . mRNA SPAC3A11.05c ; colour "2" ;
chromosome1 GeneDB CDS 3463259 3463698 . + . mRNA SPAC3A11.05c ; colour "2" ;
chromosome1 GeneDB CDS 3463745 3465065 . + . mRNA SPAC3A11.05c ; colour "2" ;
chromosome1 GeneDB misc_feature 3463128 3463133 . + . misc_feature unknown_2884 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3463239 3463258 . + . misc_feature unknown_2885 ; colour "6" ; note "ttaacaaaaaattttcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3463699 3463704 . + . misc_feature unknown_2886 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3463734 3463744 . + . misc_feature unknown_2887 ; colour "6" ; note "ctaacaagaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3465066 3465342 . + . mRNA SPAC3A11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A11.05c" ; systematic_id "SPAC3A11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3465067 3465308 . - . mRNA SPAC3A11.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A11.04" ; systematic_id "SPAC3A11.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3465309 3466274 . - . mRNA SPAC3A11.04 ; db_xref "SPD:13/13F12" ; systematic_id "SPAC3A11.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Berardinelli-Seip congenital lipodystrophy type 2, Silver spastic paraplegia syndrome, distal hereditary motor neuropathy type V; date=20061212 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=20061212 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20061212 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC3A11.04" ; product "siepin homolog" ;
chromosome1 GeneDB CDS 3465309 3465444 . - . mRNA SPAC3A11.04 ; colour "10" ;
chromosome1 GeneDB CDS 3465542 3466006 . - . mRNA SPAC3A11.04 ; colour "10" ;
chromosome1 GeneDB CDS 3466165 3466274 . - . mRNA SPAC3A11.04 ; colour "10" ;
chromosome1 GeneDB misc_feature 3465445 3465462 . - . misc_feature unknown_2888 ; colour "6" ; note "ctaacttgtccttactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3465536 3465541 . - . misc_feature unknown_2889 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3466007 3466023 . - . misc_feature unknown_2890 ; colour "6" ; note "ctgacatactttaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3466159 3466164 . - . misc_feature unknown_2891 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3466273 3466335 . - . mRNA SPAC3A11.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A11.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3466462 3467835 . + . mRNA SPAC3A11.03 ; db_xref "SPD:15/15F03" ; systematic_id "SPAC3A11.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR129C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human c17orf95 ortholog; date=20100718 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; colour "10" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0005737; cytoplasm" ; gene "SPAC3A11.03" ; product "methyltransferase (predicted)" ;
chromosome1 GeneDB CDS 3466462 3466483 . + . mRNA SPAC3A11.03 ; colour "10" ;
chromosome1 GeneDB CDS 3466772 3467472 . + . mRNA SPAC3A11.03 ; colour "10" ;
chromosome1 GeneDB CDS 3467608 3467835 . + . mRNA SPAC3A11.03 ; colour "10" ;
chromosome1 GeneDB misc_feature 3466484 3466489 . + . misc_feature unknown_2892 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3466757 3466771 . + . misc_feature unknown_2893 ; colour "6" ; note "ctaactgtcatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3467836 3467876 . + . mRNA SPAC3A11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A11.03" ; systematic_id "SPAC3A11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact ||| refined to match gene structure in PMID:21270388" ;
chromosome1 GeneDB 3'-UTR 3467984 3468196 . - . mRNA SPAC3A11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3A11.02" ; systematic_id "SPAC3A11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3468197 3470006 . - . mRNA SPAC3A11.02 ; systematic_id "SPAC3A11.02" ; colour "2" ; gene "cps3 ||| SPAC3A11.02 ||| mug188" ; Alias "cps3" ; db_xref "SPD:36/36E10" ; obsolete_name "scp3" ; synonym "mug188" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=phenotype, sensitive to spindle poison (isopropyl N-3-chlorophenyl carbamate); db_xref=PMID:7857672; cv=phenotype; date=19700101 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:7857672; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YPL054W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; GO "GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0007346; regulation of progression through mitotic cell cycle" ; primary_name "cps3" ; product "zinc finger protein Cps3" ;
chromosome1 GeneDB CDS 3468197 3469845 . - . mRNA SPAC3A11.02 ; colour "2" ;
chromosome1 GeneDB CDS 3469904 3470006 . - . mRNA SPAC3A11.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 3469846 3469858 . - . misc_feature unknown_2894 ; colour "6" ; note "ctaacaaagttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3469898 3469903 . - . misc_feature unknown_2895 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3470005 3470188 . - . mRNA SPAC3A11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3A11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3470574 3471019 . - . mRNA SPAC328.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC328.01c" ; systematic_id "SPAC328.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3471020 3474807 . - . mRNA SPAC328.01c ; systematic_id "SPAC328.01c" ; colour "7" ; gene "SPAC3A11.01 ||| SPAC328.01c" ; Alias "SPAC3A11.01" ; db_xref "SPD:39/39C09" ; synonym "SPAC3A11.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=orthologous to S. cerevisiae YDR335W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006611; protein export from nucleus
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0008565; protein transporter activity" ; primary_name "SPAC3A11.01" ; product "karyopherin (predicted)" ;
chromosome1 GeneDB CDS 3471020 3474631 . - . mRNA SPAC328.01c ; colour "7" ;
chromosome1 GeneDB CDS 3474715 3474807 . - . mRNA SPAC328.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 3471771 3471868 . + . misc_feature unknown_2896 ; note "nominal overlap with cosmid c3A11" ;
chromosome1 GeneDB misc_feature 3474632 3474648 . - . misc_feature unknown_2897 ; colour "6" ; note "ctaattatcgtttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3474709 3474714 . - . misc_feature unknown_2898 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3474806 3474972 . - . mRNA SPAC328.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC328.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3475189 3475560 . + . mRNA SPAC328.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC328.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3475561 3477075 . + . mRNA SPAC328.02 ; db_xref "SPD:24/24E09" ; systematic_id "SPAC328.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YKR017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human Ariadne homolog; date=20100222 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; colour "2" ; GO "GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; gene "SPAC328.02" ; product "ubiquitin-protein ligase involed in sporulation" ;
chromosome1 GeneDB CDS 3475561 3477075 . + . mRNA SPAC328.02 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3477076 3477279 . + . mRNA SPAC328.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC328.02" ; systematic_id "SPAC328.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 3478114 3478322 . - . LTR unknown_2899 ; note "Tf1-type LTR fragment" ;
chromosome1 GeneDB misc_RNA 3478390 3479049 . - . misc_RNA SPNCRNA.529 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.529" ; synonym "SPNGAF26" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB 5'-UTR 3479152 3479313 . + . mRNA SPAC328.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC328.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3479314 3480855 . + . mRNA SPAC328.03 ; systematic_id "SPAC328.03" ; colour "2" ; gene "tps1 ||| SPAC328.03" ; Alias "tps1" ; db_xref "SPD:25/25A05" ; GO "GO:0003825; alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0005515; protein binding
GO:0006970; response to osmotic stress
GO:0033554; cellular response to stress
GO:0030437; sporulation (sensu Fungi)
GO:0005992; trehalose biosynthetic process" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:8021171; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR126C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "tps1" ; product "alpha,alpha-trehalose-phosphate synthase [UDP- forming]" ; EC_number "2.4.1.15" ;
chromosome1 GeneDB CDS 3479314 3480855 . + . mRNA SPAC328.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3480856 3481242 . + . mRNA SPAC328.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC328.03" ; systematic_id "SPAC328.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3481738 3481908 . + . mRNA SPAC328.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC328.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3481909 3484134 . + . mRNA SPAC328.04 ; db_xref "SPD:38/38A08" ; systematic_id "SPAC328.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YER047C and YPL074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0016887; ATPase activity
GO:0005524; ATP binding" ; gene "SPAC328.04" ; product "AAA family ATPase, unknown biological role" ;
chromosome1 GeneDB CDS 3481909 3484134 . + . mRNA SPAC328.04 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 3484135 3484481 . + . mRNA SPAC328.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC328.04" ; systematic_id "SPAC328.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3484695 3486502 . + . mRNA SPAC328.05 ; db_xref "SPD:36/36E08" ; systematic_id "SPAC328.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL004W and YCL011C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0030530; heterogeneous nuclear ribonucleoprotein complex" ; gene "SPAC328.05" ; product "RNA-binding protein involved in export of mRNAs (predicted)" ;
chromosome1 GeneDB CDS 3484695 3484698 . + . mRNA SPAC328.05 ; colour "7" ;
chromosome1 GeneDB CDS 3484752 3485065 . + . mRNA SPAC328.05 ; colour "7" ;
chromosome1 GeneDB CDS 3485241 3485342 . + . mRNA SPAC328.05 ; colour "7" ;
chromosome1 GeneDB CDS 3485382 3485528 . + . mRNA SPAC328.05 ; colour "7" ;
chromosome1 GeneDB CDS 3485582 3485974 . + . mRNA SPAC328.05 ; colour "7" ;
chromosome1 GeneDB CDS 3486056 3486502 . + . mRNA SPAC328.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 3484699 3484704 . + . misc_feature unknown_2900 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3484724 3484751 . + . misc_feature unknown_2901 ; colour "6" ; note "ctgatcaaatagaatgaatttgattcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3485066 3485071 . + . misc_feature unknown_2902 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3485229 3485240 . + . misc_feature unknown_2903 ; colour "6" ; note "ctaatatatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3485343 3485348 . + . misc_feature unknown_2904 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3485367 3485381 . + . misc_feature unknown_2905 ; colour "6" ; note "ttaaccttcgtaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3485529 3485534 . + . misc_feature unknown_2906 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3485569 3485581 . + . misc_feature unknown_2907 ; colour "6" ; note "ctaacgagtatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3485808 3485813 . + . misc_feature unknown_2908 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3485898 3485909 . + . misc_feature unknown_2909 ; colour "6" ; note "ctaatactcaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3485975 3485980 . + . misc_feature unknown_2910 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3486042 3486055 . + . misc_feature unknown_2911 ; colour "6" ; note "ctgactgaatatag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 3487232 3487324 . + . mRNA SPAC328.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC328.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3487325 3490834 . + . mRNA SPAC328.06 ; systematic_id "SPAC328.06" ; colour "2" ; gene "SPAC328.06 ||| ubp2" ; db_xref "SPD:30/30E06" ; Alias "ubp2" ; GO "GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0043162; ubiquitin-dependent catabolic process via the multivesicular body sorting pathway" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110" ; primary_name "ubp2" ; product "ubiquitin C-terminal hydrolase Ubp2" ;
chromosome1 GeneDB CDS 3487325 3490684 . + . mRNA SPAC328.06 ; colour "2" ;
chromosome1 GeneDB CDS 3490769 3490834 . + . mRNA SPAC328.06 ; colour "2" ;
chromosome1 GeneDB intron 3487698 3487781 . + . intron SPAC328.06 ; db_xref "SPD:30/30E06" ; systematic_id "SPAC328.06" ; gene "SPAC328.06 ||| ubp2" ;
chromosome1 GeneDB misc_feature 3490685 3490690 . + . misc_feature unknown_2912 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3490754 3490768 . + . misc_feature unknown_2913 ; colour "6" ; note "ctaacatttatctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3490835 3490977 . + . mRNA SPAC328.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC328.06" ; systematic_id "SPAC328.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3491252 3491582 . - . mRNA SPAC328.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC328.07c" ; systematic_id "SPAC328.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3491583 3492484 . - . mRNA SPAC328.07c ; db_xref "SPD:12/12D06" ; systematic_id "SPAC328.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR290W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0006623; protein targeting to vacuole
GO:0005783; endoplasmic reticulum
GO:0010959; regulation of metal ion transport
GO:0005789; endoplasmic reticulum membrane
GO:0006875; metal ion homeostasis" ; gene "SPAC328.07c" ; product "heavy metal ion homeostasis protein (predicted)" ;
chromosome1 GeneDB CDS 3491583 3492398 . - . mRNA SPAC328.07c ; colour "7" ;
chromosome1 GeneDB CDS 3492467 3492484 . - . mRNA SPAC328.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 3492399 3492416 . - . misc_feature unknown_2914 ; colour "6" ; note "ctaacaaatctattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3492461 3492466 . - . misc_feature unknown_2915 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3492483 3492566 . - . mRNA SPAC328.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC328.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3492899 3493091 . - . mRNA SPAC328.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC328.08c" ; systematic_id "SPAC328.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3493092 3494183 . - . mRNA SPAC328.08c ; systematic_id "SPAC328.08c" ; colour "7" ; gene "SPAC328.08c" ; Alias "tbc1" ; db_xref "SPD:17/17A12" ; GO "GO:0005737; cytoplasm
GO:0007023; post-chaperonin tubulin folding pathway
GO:0005096; GTPase activator activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL241C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TBCC ortholog; date=20110113" ; primary_name "tbc1" ; product "tubulin specific chaperone cofactor C Tbc1 (predicted)" ;
chromosome1 GeneDB CDS 3493092 3493274 . - . mRNA SPAC328.08c ; colour "7" ;
chromosome1 GeneDB CDS 3493506 3494071 . - . mRNA SPAC328.08c ; colour "7" ;
chromosome1 GeneDB CDS 3494153 3494183 . - . mRNA SPAC328.08c ; colour "7" ;
chromosome1 GeneDB misc_feature 3493275 3493288 . - . misc_feature unknown_2916 ; colour "6" ; note "ctaacgccttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3493500 3493505 . - . misc_feature unknown_2917 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3494072 3494089 . - . misc_feature unknown_2918 ; colour "6" ; note "ctaactacttttttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3494147 3494152 . - . misc_feature unknown_2919 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3494182 3494497 . - . mRNA SPAC328.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC328.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3494658 3494709 . + . mRNA SPAC328.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC328.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3494710 3495877 . + . mRNA SPAC328.09 ; db_xref "SPD:18/18E03" ; systematic_id "SPAC328.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YOR222W and YPL134C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0005215; intracellular transporter activity
GO:0005342; organic acid transporter activity" ; gene "SPAC328.09" ; product "mitochondrial 2-oxoadipate and 2-oxoglutarate transporter (predicted)" ;
chromosome1 GeneDB CDS 3494710 3494775 . + . mRNA SPAC328.09 ; colour "7" ;
chromosome1 GeneDB CDS 3495047 3495877 . + . mRNA SPAC328.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 3494776 3494781 . + . misc_feature unknown_2920 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3495028 3495046 . + . misc_feature unknown_2921 ; colour "6" ; note "ctaactctttctttttcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3495878 3497628 . + . mRNA SPAC328.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC328.09" ; systematic_id "SPAC328.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3496487 3497386 . - . mRNA SPAC328.10c ; systematic_id "SPAC328.10c" ; colour "7" ; gene "rps502 ||| rps5-2 ||| SPAC328.10c" ; Alias "rps502" ; db_xref "SPD:12/12C11" ; synonym "rps5-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps502" ; product "40S ribosomal protein S5 (predicted)" ;
chromosome1 GeneDB CDS 3496487 3496988 . - . mRNA SPAC328.10c ; colour "7" ;
chromosome1 GeneDB CDS 3497277 3497386 . - . mRNA SPAC328.10c ; colour "7" ;
chromosome1 GeneDB misc_feature 3496989 3497002 . - . misc_feature unknown_2922 ; colour "6" ; note "ctaactttatttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3496989 3497276 . - . intron SPAC328.10c ; Alias "rps502" ; db_xref "SPD:12/12C11" ; systematic_id "SPAC328.10c" ; primary_name "rps502" ; gene "rps502 ||| rps5-2 ||| SPAC328.10c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 3497271 3497276 . - . misc_feature unknown_2923 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3497654 3497755 . + . misc_feature unknown_2924 ; note "nominal overlap with cosmid c16E8" ;
chromosome1 GeneDB misc_RNA 3497897 3498505 . + . misc_RNA SPNCRNA.222 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.222" ; synonym "SPNG659" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 3499049 3503457 . + . mRNA SPAC16E8.01 ; systematic_id "SPAC16E8.01" ; colour "7" ; gene "shd1 ||| sla1 ||| SPAC16E8.01" ; Alias "shd1" ; db_xref "SPD:30/30G12" ; synonym "sla1" ; GO "GO:0006897; endocytosis
GO:0031505; cell wall organization and biogenesis
GO:0000147; actin cortical patch assembly
GO:0007015; actin filament organization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL007C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=name description, Sh3 Homology Domain; date=20100715" ; primary_name "shd1" ; product "cytoskeletal protein binding protein Sla1 family, Shd1 (predicted)" ; reserved_name "shd1" ;
chromosome1 GeneDB CDS 3499049 3499282 . + . mRNA SPAC16E8.01 ; colour "7" ;
chromosome1 GeneDB CDS 3499429 3503457 . + . mRNA SPAC16E8.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 3499283 3499288 . + . misc_feature unknown_2925 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3499410 3499428 . + . misc_feature unknown_2926 ; colour "6" ; note "ctaaccattttgtgtatag, splice branch and acceptor sequ ence" ;
chromosome1 GeneDB 3'-UTR 3503458 3503841 . + . mRNA SPAC16E8.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16E8.01" ; systematic_id "SPAC16E8.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3504068 3504260 . + . mRNA SPAC16E8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16E8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3504261 3505014 . + . mRNA SPAC16E8.02 ; db_xref "SPD:09/09C04" ; systematic_id "SPAC16E8.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL010W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAC16E8.02" ; product "DUF962 family protein" ;
chromosome1 GeneDB CDS 3504261 3504269 . + . mRNA SPAC16E8.02 ; colour "10" ;
chromosome1 GeneDB CDS 3504311 3504377 . + . mRNA SPAC16E8.02 ; colour "10" ;
chromosome1 GeneDB CDS 3504422 3505014 . + . mRNA SPAC16E8.02 ; colour "10" ;
chromosome1 GeneDB misc_feature 3504270 3504275 . + . misc_feature unknown_2927 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3504297 3504310 . + . misc_feature unknown_2928 ; colour "6" ; note "ctaatagtaattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3504378 3504383 . + . misc_feature unknown_2929 ; colour "6" ; note "gtgaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3504410 3504421 . + . misc_feature unknown_2930 ; colour "6" ; note "ctaacttagaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 5'-UTR 3505109 3505143 . + . mRNA SPAC16E8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16E8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3505144 3505580 . + . mRNA SPAC16E8.03 ; systematic_id "SPAC16E8.03" ; colour "7" ; gene "gna1 ||| SPAC16E8.03 ||| spgna1" ; Alias "gna1" ; db_xref "SPD:03/03G01" ; synonym "spgna1" ; GO "GO:0006048; UDP-N-acetylglucosamine biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gna1" ; product "glucosamine-phosphate N-acetyltransferase (predicted)" ; EC_number "2.3.1.4" ;
chromosome1 GeneDB CDS 3505144 3505209 . + . mRNA SPAC16E8.03 ; colour "7" ;
chromosome1 GeneDB CDS 3505311 3505580 . + . mRNA SPAC16E8.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 3505210 3505215 . + . misc_feature unknown_2931 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3505210 3505310 . + . intron SPAC16E8.03 ; Alias "gna1" ; db_xref "SPD:03/03G01" ; systematic_id "SPAC16E8.03" ; primary_name "gna1" ; gene "gna1 ||| SPAC16E8.03 ||| spgna1" ; note "confirmed by EST" ;
chromosome1 GeneDB misc_feature 3505300 3505310 . + . misc_feature unknown_2932 ; colour "6" ; note "ctaatatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3505581 3505657 . + . mRNA SPAC16E8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16E8.03" ; systematic_id "SPAC16E8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3505657 3506030 . - . mRNA SPAC16E8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16E8.04c" ; systematic_id "SPAC16E8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3506031 3506845 . - . mRNA SPAC16E8.04c ; db_xref "SPD:10/10D11" ; systematic_id "SPAC16E8.04c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR060C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0006571; tyrosine biosynthesis
GO:0000162; tryptophan biosynthesis
GO:0009094; phenylalanine biosynthesis, shikimate pathway
GO:0004106; chorismate mutase activity
GO:0042803; protein homodimerization activity" ; gene "SPAC16E8.04c" ; product "chorismate mutase (predicted)" ; EC_number "5.4.99.5" ;
chromosome1 GeneDB CDS 3506031 3506093 . - . mRNA SPAC16E8.04c ; colour "7" ;
chromosome1 GeneDB CDS 3506153 3506845 . - . mRNA SPAC16E8.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 3506094 3506111 . - . misc_feature unknown_2933 ; colour "6" ; note "ctaattgtttcgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3506147 3506152 . - . misc_feature unknown_2934 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3506844 3506981 . - . mRNA SPAC16E8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16E8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3507605 3508277 . - . mRNA SPAC16E8.05c ; systematic_id "SPAC16E8.05c" ; colour "8" ; gene "mde1 ||| SPAC16E8.05c" ; Alias "mde1" ; db_xref "SPD:07/07G05" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mde1" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3507605 3508050 . - . mRNA SPAC16E8.05c ; colour "8" ;
chromosome1 GeneDB CDS 3508094 3508277 . - . mRNA SPAC16E8.05c ; colour "8" ;
chromosome1 GeneDB misc_feature 3508051 3508070 . - . misc_feature unknown_2935 ; colour "6" ; note "ctaatggagcattatag, splice branch and acceptor sequen ce" ;
chromosome1 GeneDB misc_feature 3508088 3508093 . - . misc_feature unknown_2936 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3508570 3508645 . - . mRNA SPAC16E8.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16E8.06c" ; systematic_id "SPAC16E8.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3508646 3510007 . - . mRNA SPAC16E8.06c ; systematic_id "SPAC16E8.06c" ; colour "7" ; gene "SPAC16E8.06c ||| nop12" ; Alias "nop12" ; db_xref "SPD:21/21B05" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL041C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "nop12" ; product "RNA-binding protein Nop12 (predicted)" ;
chromosome1 GeneDB CDS 3508646 3509854 . - . mRNA SPAC16E8.06c ; colour "7" ;
chromosome1 GeneDB CDS 3509900 3510007 . - . mRNA SPAC16E8.06c ; colour "7" ;
chromosome1 GeneDB misc_RNA 3508689 3509194 . + . misc_RNA SPNCRNA.562 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.562" ; synonym "SPNG2AF12" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB misc_feature 3509855 3509868 . - . misc_feature unknown_2937 ; colour "6" ; note "ttaatagtttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 3509855 3509899 . - . intron SPAC16E8.06c ; db_xref "SPD:21/21B05" ; systematic_id "SPAC16E8.06c" ; gene "SPAC16E8.06c ||| nop12" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3509894 3509899 . - . misc_feature unknown_2938 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3510008 3510077 . - . mRNA SPAC16E8.06c ; ID "SPAC16E8.06c" ; systematic_id "SPAC16E8.06c" ; gene "SPAC16E8.06c ||| nop12" ; note "mRNA from AU012473" ;
chromosome1 GeneDB 3'-UTR 3510283 3510418 . - . mRNA SPAC16E8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16E8.07c" ; systematic_id "SPAC16E8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3510419 3512889 . - . mRNA SPAC16E8.07c ; systematic_id "SPAC16E8.07c" ; colour "7" ; gene "vph1 ||| SPAC16E8.07c" ; Alias "vph1" ; db_xref "SPD:28/28H06" ; GO "GO:0000220; vacuolar proton-transporting ATPase, V0 domain
GO:0005524; ATP binding
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, renal tubular acidosis; date=20061010 ||| term=orthologous to S. cerevisiae YOR270C and YMR054W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vph1" ; product "V-type ATPase V0 subunit a (predicted)" ;
chromosome1 GeneDB CDS 3510419 3512794 . - . mRNA SPAC16E8.07c ; colour "7" ;
chromosome1 GeneDB CDS 3512848 3512889 . - . mRNA SPAC16E8.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 3512795 3512807 . - . misc_feature unknown_2939 ; colour "6" ; note "ctaactctttaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 3512795 3512847 . - . intron SPAC16E8.07c ; Alias "vph1" ; db_xref "SPD:28/28H06" ; systematic_id "SPAC16E8.07c" ; primary_name "vph1" ; gene "vph1 ||| SPAC16E8.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3512842 3512847 . - . misc_feature unknown_2940 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3512890 3512955 . - . mRNA SPAC16E8.07c ; Alias "vph1" ; ID "SPAC16E8.07c" ; systematic_id "SPAC16E8.07c" ; primary_name "vph1" ; gene "vph1 ||| SPAC16E8.07c" ; note "mRNA from AU008872" ;
chromosome1 GeneDB 5'-UTR 3514019 3514028 . + . mRNA SPAC16E8.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16E8.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3514029 3514894 . + . mRNA SPAC16E8.08 ; db_xref "SPD:11/11F04" ; systematic_id "SPAC16E8.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC16E8.08" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3514029 3514130 . + . mRNA SPAC16E8.08 ; colour "8" ;
chromosome1 GeneDB CDS 3514187 3514894 . + . mRNA SPAC16E8.08 ; colour "8" ;
chromosome1 GeneDB misc_feature 3514131 3514136 . + . misc_feature unknown_2941 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3514169 3514186 . + . misc_feature unknown_2942 ; colour "6" ; note "ttaacatgcaaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3514895 3515173 . + . mRNA SPAC16E8.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16E8.08" ; systematic_id "SPAC16E8.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3515632 3515829 . + . mRNA SPAC16E8.09 ; Alias "scd1" ; ID "SPAC16E8.09" ; systematic_id "SPAC16E8.09" ; primary_name "scd1" ; gene "scd1 ||| ral1 ||| SPAC16E8.09" ; note "mRNA from AU006558" ;
chromosome1 GeneDB CDS_parts 3515830 3518526 . + . mRNA SPAC16E8.09 ; systematic_id "SPAC16E8.09" ; colour "2" ; gene "scd1 ||| ral1 ||| SPAC16E8.09" ; Alias "scd1" ; db_xref "SPD:39/39A01" ; synonym "ral1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Shape and Conjugation Deficiency; cv=name_description; db_xref=PMID:7923372; date=20061128 ||| term=name description, RAs Like; cv=name_description; db_xref=PMID:3071741; date=20061128 ||| term=phenotype, viable; cv=phenotype; date=20061128 ||| term=pleckstrin homology domain; cv=protein_family; date=20061128 ||| term=calponin homology (CH) domain; cv=protein_family; db_xref=Pfam:PF06395; date=20061128 ||| term=pathway, Ras1-Scd; cv=pathway; date=19700101 ||| term=octicosapeptide repeat; date=19700101 ||| term=orthologous to S. cerevisiae YAL041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, round cells; qualifier=deletion; cv=phenotype; db_xref=PMID:7923372; date=20090217" ; GO "GO:0071521; Cdc42 GTPase complex
GO:0032153; cell division site
GO:0051286; cell tip
GO:0043332; mating projection tip
GO:0005634; nucleus
GO:0030427; site of polarized growth
GO:0005819; spindle
GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043088; Cdc42 GTPase activity
; regulation of barrier septum formation
GO:0008360; regulation of cell shape
GO:0030100; regulation of endocytosis
GO:0032878; regulation of establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0032887; regulation of spindle organization
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0032488; Cdc42 protein signal tansduction" ; primary_name "scd1" ; product "RhoGEF Scd1" ;
chromosome1 GeneDB CDS 3515830 3515854 . + . mRNA SPAC16E8.09 ; colour "2" ;
chromosome1 GeneDB CDS 3515933 3518526 . + . mRNA SPAC16E8.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 3515855 3515860 . + . misc_feature unknown_2943 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3515855 3515932 . + . intron SPAC16E8.09 ; Alias "scd1" ; db_xref "SPD:39/39A01" ; systematic_id "SPAC16E8.09" ; primary_name "scd1" ; gene "scd1 ||| ral1 ||| SPAC16E8.09" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3515915 3515932 . + . misc_feature unknown_2944 ; colour "6" ; note "ctaactaacttctaaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3518527 3518692 . + . mRNA SPAC16E8.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16E8.09" ; systematic_id "SPAC16E8.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3518894 3519760 . - . mRNA SPAC16E8.10c ; systematic_id "SPAC16E8.10c" ; colour "7" ; gene "SPAC16E8.10c" ; note "extended to include potential mitochondrial signal peptide 11-08-04" ; db_xref "SPD:10/10D08" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR113C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, gene structure updated; date=20041108" ; product "mitochondrial ribosomal protein subunit S7 (predicted)" ;
chromosome1 GeneDB CDS 3518894 3519139 . - . mRNA SPAC16E8.10c ; colour "7" ;
chromosome1 GeneDB CDS 3519227 3519760 . - . mRNA SPAC16E8.10c ; colour "7" ;
chromosome1 GeneDB misc_feature 3519140 3519154 . - . misc_feature unknown_2945 ; colour "6" ; note "ctaatattttgatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3519221 3519226 . - . misc_feature unknown_2946 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3519761 3519812 . - . mRNA SPAC16E8.10c ; ID "SPAC16E8.10c" ; systematic_id "SPAC16E8.10c" ; gene "SPAC16E8.10c" ; note "mRNA from AU006617" ;
chromosome1 GeneDB 3'-UTR 3520294 3520541 . - . mRNA SPAC16E8.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16E8.11c" ; systematic_id "SPAC16E8.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3520542 3522120 . - . mRNA SPAC16E8.11c ; systematic_id "SPAC16E8.11c" ; colour "7" ; gene "tfb1 ||| SPAC16E8.11c" ; Alias "tfb1" ; db_xref "SPD:25/25D09" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0000112; nucleotide-excision repair factor 3 complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000717; nucleotide-excision repair, DNA duplex unwinding
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR311W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human GTF2H1 ortholog; date=20110113" ; primary_name "tfb1" ; product "transcription factor TFIIH complex subunit Tfb1 (predicted)" ;
chromosome1 GeneDB CDS 3520542 3520619 . - . mRNA SPAC16E8.11c ; colour "7" ;
chromosome1 GeneDB CDS 3520663 3521206 . - . mRNA SPAC16E8.11c ; colour "7" ;
chromosome1 GeneDB CDS 3521264 3521447 . - . mRNA SPAC16E8.11c ; colour "7" ;
chromosome1 GeneDB CDS 3521493 3522120 . - . mRNA SPAC16E8.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 3520620 3520633 . - . misc_feature unknown_2947 ; colour "6" ; note "ttaactaggattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3520657 3520662 . - . misc_feature unknown_2948 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3521207 3521220 . - . misc_feature unknown_2949 ; colour "6" ; note "ctaacaacttgtag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3521258 3521263 . - . misc_feature unknown_2950 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3521448 3521461 . - . misc_feature unknown_2951 ; colour "6" ; note "ctaacattttcaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3521487 3521492 . - . misc_feature unknown_2952 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3522119 3522375 . - . mRNA SPAC16E8.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16E8.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3522650 3522973 . - . mRNA SPAC16E8.18 ; db_xref "SPD:51/51G06" ; systematic_id "SPAC16E8.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC16E8.18" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3522650 3522973 . - . mRNA SPAC16E8.18 ; colour "8" ;
chromosome1 GeneDB CDS_parts 3523136 3524098 . - . mRNA SPAC16E8.12c ; db_xref "SPD:43/43E07" ; systematic_id "SPAC16E8.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; colour "8" ; gene "SPAC16E8.12c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3523136 3523644 . - . mRNA SPAC16E8.12c ; colour "8" ;
chromosome1 GeneDB CDS 3523925 3523996 . - . mRNA SPAC16E8.12c ; colour "8" ;
chromosome1 GeneDB CDS 3524044 3524098 . - . mRNA SPAC16E8.12c ; colour "8" ;
chromosome1 GeneDB misc_feature 3523645 3523657 . - . misc_feature unknown_2953 ; colour "6" ; note "ttaacatgttcag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3524021 3524026 . - . misc_feature unknown_2954 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3524099 3524162 . - . mRNA SPAC16E8.12c ; ID "SPAC16E8.12c" ; systematic_id "SPAC16E8.12c" ; gene "SPAC16E8.12c" ; note "CRUK ccg.O.1379" ;
chromosome1 GeneDB intron 3524163 3524204 . - . intron SPAC16E8.12c ; db_xref "SPD:43/43E07" ; systematic_id "SPAC16E8.12c" ; note "confirmed by CRUK ccg.O.1379" ;
chromosome1 GeneDB 5'-UTR 3525291 3525303 . + . mRNA SPAC16E8.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16E8.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3525304 3526947 . + . mRNA SPAC16E8.13 ; db_xref "SPD:34/34E05" ; systematic_id "SPAC16E8.13" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-UBP type; date=20060726 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YHL010C; date=19700101 ||| term=human BRAP2 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAC16E8.13" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB CDS 3525304 3526947 . + . mRNA SPAC16E8.13 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3527051 3527155 . - . mRNA SPAC16E8.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16E8.14c" ; systematic_id "SPAC16E8.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3527156 3528141 . - . mRNA SPAC16E8.14c ; systematic_id "SPAC16E8.14c" ; colour "7" ; gene "SPAC16E8.14c" ; db_xref "SPD:14/14C09" ; Alias "tae1" ; GO "GO:0005737; cytoplasm
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0008276; protein methyltransferase activity
GO:0071891; N-terminal peptidyl-proline dimethylation involved in translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR261C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tae1" ; product "AdoMet dependent proline dimethyltransferase involved in translation Tea1 (predicted)" ; reserved_name "tae1" ;
chromosome1 GeneDB CDS 3527156 3527341 . - . mRNA SPAC16E8.14c ; colour "7" ;
chromosome1 GeneDB CDS 3527384 3527493 . - . mRNA SPAC16E8.14c ; colour "7" ;
chromosome1 GeneDB CDS 3527595 3527862 . - . mRNA SPAC16E8.14c ; colour "7" ;
chromosome1 GeneDB CDS 3528009 3528069 . - . mRNA SPAC16E8.14c ; colour "7" ;
chromosome1 GeneDB CDS 3528107 3528141 . - . mRNA SPAC16E8.14c ; colour "7" ;
chromosome1 GeneDB misc_feature 3527342 3527353 . - . misc_feature unknown_2955 ; colour "6" ; note "ctgacttcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3527378 3527383 . - . misc_feature unknown_2956 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3527494 3527506 . - . misc_feature unknown_2957 ; colour "6" ; note "ttaacaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3527589 3527594 . - . misc_feature unknown_2958 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3527863 3527876 . - . misc_feature unknown_2959 ; colour "6" ; note "ttaacattctacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3528003 3528008 . - . misc_feature unknown_2960 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3528070 3528081 . - . misc_feature unknown_2961 ; colour "6" ; note "ctaatttaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3528101 3528106 . - . misc_feature unknown_2962 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB promoter 3528120 3528123 . + . promoter unknown_2963 ; db_xref "EMBL:SPEIF4E" ; colour "4" ; note "TATA box" ;
chromosome1 GeneDB 5'-UTR 3528140 3528157 . - . mRNA SPAC16E8.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16E8.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3528159 3529017 . + . mRNA SPAC16E8.15 ; systematic_id "SPAC16E8.15" ; colour "2" ; gene "tif45 ||| tif1 ||| SPAC16E8.15" ; Alias "tif45" ; db_xref "SPD:11/11D12" ; synonym "tif1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; evidence=ISS; residue=208; cv=pt_mod; date=20091216" ; GO "GO:0000339; RNA cap binding
GO:0016281; eukaryotic translation initiation factor 4F complex
GO:0006413; translational initiation
GO:0003743; translation initiation factor activity
GO:0000184; mRNA catabolism, nonsense-mediated decay" ; primary_name "tif45" ; product "translation initiation factor eIF4E, 4F complex subunit" ;
chromosome1 GeneDB CDS 3528159 3528385 . + . mRNA SPAC16E8.15 ; colour "2" ;
chromosome1 GeneDB CDS 3528454 3528628 . + . mRNA SPAC16E8.15 ; colour "2" ;
chromosome1 GeneDB CDS 3528763 3529017 . + . mRNA SPAC16E8.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 3528386 3528391 . + . misc_feature unknown_2964 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 3528386 3528453 . + . intron SPAC16E8.15 ; Alias "tif45" ; db_xref "SPD:11/11D12" ; systematic_id "SPAC16E8.15" ; primary_name "tif45" ; gene "tif45 ||| tif1 ||| SPAC16E8.15" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3528438 3528453 . + . misc_feature unknown_2965 ; colour "6" ; note "ctaacattcgattcag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 3528629 3528634 . + . misc_feature unknown_2966 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB intron 3528629 3528762 . + . intron SPAC16E8.15 ; Alias "tif45" ; db_xref "SPD:11/11D12" ; systematic_id "SPAC16E8.15" ; primary_name "tif45" ; gene "tif45 ||| tif1 ||| SPAC16E8.15" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3528748 3528762 . + . misc_feature unknown_2967 ; colour "6" ; note "ctaatatatcgctag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 3529018 3529446 . + . mRNA SPAC16E8.15 ; Alias "tif45" ; ID "SPAC16E8.15" ; db_xref "SPD:11/11D12" ; systematic_id "SPAC16E8.15" ; primary_name "tif45" ; gene "tif45 ||| tif1 ||| SPAC16E8.15" ; note "mRNA from AU010044" ;
chromosome1 GeneDB 5'-UTR 3529970 3530336 . + . mRNA SPAC16E8.16 ; ID "SPAC16E8.16" ; systematic_id "SPAC16E8.16" ; gene "SPAC16E8.16" ; note "mRNA from AU012157" ;
chromosome1 GeneDB CDS_parts 3530337 3531503 . + . mRNA SPAC16E8.16 ; db_xref "SPD:18/18D10" ; systematic_id "SPAC16E8.16" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "2" ; GO "GO:0030528; RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0005634; nucleus" ; gene "SPAC16E8.16" ; product "transcription factor TFIIB" ;
chromosome1 GeneDB CDS 3530337 3530470 . + . mRNA SPAC16E8.16 ; colour "2" ;
chromosome1 GeneDB CDS 3530615 3531503 . + . mRNA SPAC16E8.16 ; colour "2" ;
chromosome1 GeneDB misc_feature 3530471 3530476 . + . misc_feature unknown_2968 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3530600 3530614 . + . misc_feature unknown_2969 ; colour "6" ; note "ctaaccaacatatcag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB 3'-UTR 3531504 3532006 . + . mRNA SPAC16E8.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16E8.16" ; systematic_id "SPAC16E8.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3532280 3532417 . - . mRNA SPAC16E8.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16E8.17c" ; systematic_id "SPAC16E8.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3532418 3533413 . - . mRNA SPAC16E8.17c ; systematic_id "SPAC16E8.17c" ; colour "7" ; gene "SPAC16E8.17c" ; note "due to inconsistencies between the annotation of the proposed S. cerevisiae ortholog LSC1 in SWISSPROT:P53598 and SGD:S0005668 succinate-CoA ligase (GDP-forming)/6.2.1.4 and succinate-CoA ligase (ADP- forming) repectively, conservatively annotated to EC 6.2.1.- and GO:0004774, succinate-CoA ligase activity" ; db_xref "KEGG:MAP00020; ||| SPD:14/14E07" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006104; succinyl-CoA metabolism
GO:0005739; mitochondrion
GO:0004774; succinate-CoA ligase activity
GO:0042709; succinate-CoA ligase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR142W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; product "succinate-CoA ligase alpha subunit (predicted)" ; EC_number "6.2.1.-" ;
chromosome1 GeneDB CDS 3532418 3533413 . - . mRNA SPAC16E8.17c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3533412 3533547 . - . mRNA SPAC16E8.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16E8.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3533705 3534357 . - . mRNA SPAC16E8.18c ; systematic_id "SPAC16E8.18c" ;
chromosome1 GeneDB CDS_parts 3534358 3534966 . - . mRNA SPAC16E8.18c ; systematic_id "SPAC16E8.18c" ; colour "8" ; note "reinstated old SPAC16E8.18c but added splice site and exon; matches transcriptome data; no homology" ; obsolete_name "SPNCRNA.223" ; Alias "tam5" ; synonym "SPNG664 ||| SPNGAF2" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; primary_name "tam5" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3534358 3534738 . - . mRNA SPAC16E8.18c ; colour "8" ;
chromosome1 GeneDB CDS 3534877 3534966 . - . mRNA SPAC16E8.18c ; colour "8" ;
chromosome1 GeneDB misc_feature 3534917 3534954 . + . misc_feature unknown_2970 ; note "nominal overlap with cosmid SPAC1B1 and cosmid SPAC16E8" ;
chromosome1 GeneDB 5'-UTR 3534967 3535127 . - . mRNA SPAC16E8.18c ; db_xref "PMID:21270388" ; systematic_id "SPAC16E8.18c" ; note "transcriptome data indicates a longer trancript in late meiosis" ;
chromosome1 GeneDB 5'-UTR 3536511 3536626 . + . mRNA SPAC1B1.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B1.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3536627 3538259 . + . mRNA SPAC1B1.01 ; systematic_id "SPAC1B1.01" ; colour "2" ; gene "SPAC1B1.01" ; Alias "deb1" ; db_xref "SPD:26/26A12" ; synonym "rdp1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=gene expression, transcriptionally regulates rhp51; db_xref=PMID:11073995; cv=gene_ex; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DNA binding specificity, binds DRE 5'-NG[GT]T[G/A]-3'; db_xref=PMID:11073995; cv=DNA_binding_specificity; date=20100302 ||| term=name description, DRE Element Binding; cv=name_description; date=20100302 ||| term=warning, gene name conflict; cv=warning; date=20100302" ; GO "GO:0000790; nuclear chromatin
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent" ; primary_name "deb1" ; product "transcription factor Deb1/Rdp1" ;
chromosome1 GeneDB CDS 3536627 3537788 . + . mRNA SPAC1B1.01 ; colour "2" ;
chromosome1 GeneDB CDS 3537985 3538259 . + . mRNA SPAC1B1.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 3537789 3537794 . + . misc_feature unknown_2971 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3537974 3537984 . + . misc_feature unknown_2972 ; colour "6" ; note "ttaacctttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 3538260 3538545 . + . mRNA SPAC1B1.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B1.01" ; systematic_id "SPAC1B1.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3538828 3539024 . - . mRNA SPAC1B1.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B1.02c" ; systematic_id "SPAC1B1.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3539025 3540638 . - . mRNA SPAC1B1.02c ; db_xref "SPD:45/45D04" ; systematic_id "SPAC1B1.02c" ; colour "7" ; GO "GO:0003951; NAD+ kinase activity
GO:0019674; NAD metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL041W and YJR049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC1B1.02c" ; product "NAD/NADH kinase (predicted)" ; EC_number "2.7.1.23" ;
chromosome1 GeneDB CDS 3539025 3540638 . - . mRNA SPAC1B1.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3540637 3540919 . - . mRNA SPAC1B1.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B1.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3541416 3541489 . - . mRNA SPAC1B1.03c ; Alias "kap95" ; ID "SPAC1B1.03c" ; db_xref "SPD:38/38E07" ; systematic_id "SPAC1B1.03c" ; primary_name "kap95" ; gene "kap95 ||| SPAC1B1.03c" ; note "mRNA from AU010368" ;
chromosome1 GeneDB CDS_parts 3541490 3544081 . - . mRNA SPAC1B1.03c ; systematic_id "SPAC1B1.03c" ; colour "2" ; gene "kap95 ||| SPAC1B1.03c" ; Alias "kap95" ; db_xref "SPD:38/38E07" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0051301; cell division
GO:0008565; protein transporter activiy
GO:0005525; GTP binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YLR347C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "kap95" ; product "karyopherin Kap95" ;
chromosome1 GeneDB CDS 3541490 3544081 . - . mRNA SPAC1B1.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3544080 3544270 . - . mRNA SPAC1B1.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B1.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3544762 3544812 . - . mRNA SPAC1B1.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B1.04c" ; systematic_id "SPAC1B1.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3544813 3546741 . - . mRNA SPAC1B1.04c ; db_xref "SPD:26/26H02" ; systematic_id "SPAC1B1.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0031251; PAN complex
GO:0005737; cytoplasm
GO:0031124; mRNA 3'-end processing
GO:0006301; postreplication repair" ; gene "SPAC1B1.04c" ; product "poly(A)-specific ribonuclease complex subunit Pan3 (predicted)" ;
chromosome1 GeneDB CDS 3544813 3544920 . - . mRNA SPAC1B1.04c ; colour "7" ;
chromosome1 GeneDB CDS 3544971 3545250 . - . mRNA SPAC1B1.04c ; colour "7" ;
chromosome1 GeneDB CDS 3545315 3546741 . - . mRNA SPAC1B1.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 3544921 3544933 . - . misc_feature unknown_2973 ; colour "6" ; note "ctaacttaattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 3544921 3544970 . - . intron SPAC1B1.04c ; db_xref "SPD:26/26H02" ; systematic_id "SPAC1B1.04c" ; gene "SPAC1B1.04c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3544965 3544970 . - . misc_feature unknown_2974 ; colour "6" ; note "gtacac, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3545251 3545265 . - . misc_feature unknown_2975 ; colour "6" ; note "ctaactcttgaaaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 3545251 3545314 . - . intron SPAC1B1.04c ; db_xref "SPD:26/26H02" ; systematic_id "SPAC1B1.04c" ; gene "SPAC1B1.04c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3545309 3545314 . - . misc_feature unknown_2976 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3546740 3547290 . - . mRNA SPAC1B1.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B1.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB rRNA 3547889 3548049 . - . rRNA SPRRNA.15 ; systematic_id "SPRRNA.15" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.15" ; product "5S rRNA" ;
chromosome1 GeneDB 5'-UTR 3549682 3550151 . + . mRNA SPAC17A2.01 ; Alias "SPAC1B1.05" ; ID "SPAC17A2.01" ; systematic_id "SPAC17A2.01" ; primary_name "SPAC1B1.05" ; gene "SPAC1B1.05 ||| SPAC17A2.01 ||| bsu1" ; note "mRNA from AU007811" ;
chromosome1 GeneDB CDS_parts 3550152 3551732 . + . mRNA SPAC17A2.01 ; systematic_id "SPAC17A2.01" ; colour "2" ; gene "SPAC1B1.05 ||| SPAC17A2.01 ||| bsu1" ; Alias "bsu1" ; db_xref "SPD:45/45C01" ; synonym "sod1 ||| car1 ||| SPAC1B1.05 ||| bsu1" ; GO "GO:0005887; integral to plasma membrane
GO:0005886; plasma membrane
GO:0031925; pyridoxal transmembrane transporter activity
GO:0031927; pyridoxamine transmembrane transporter activity
GO:0031928; pyridoxine transmembrane transporter activity
GO:0015234; thiamin transmembrane transporter activity
GO:0031920; pyridoxal transport
GO:0031922; pyridoxamine transport
GO:0031923; pyridoxine transport
GO:0071934; thiamin transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=gene expression, transcriptionally repressed by thiamine; cv=gene_ex; db_xref=PMID:8675019; date=19700101 ||| term=phenotype, resistance to amorilide; qualifier=deletion; cv=phenotype; db_xref=PMID:8246883; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPCC576.17c and SPCC965.13; date=19700101 ||| term=name description, Changed Amorilide Resistance; db_xref=PMID:8246883; cv=name_description; date=20091016 ||| term=name description, vitamin B Six Uptake; db_xref=PMID:15701794; cv=name_description; date=20091016 ||| term=warning, gene name conflict; cv=warning; date=20091016 ||| term=warning, S. cerevisiae PN uptake is mediated by the unrelated transporter Tpn1p; cv=warning; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "bsu1" ; product "high-affinity import carrier for pyridoxine, pyridoxal, and pyridoxamine Bsu1" ;
chromosome1 GeneDB CDS 3550152 3551732 . + . mRNA SPAC17A2.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 3550350 3550387 . + . misc_feature unknown_2977 ; note "nominal overlap with cosmid SPAC17A2 and cosmid SPAC1B1" ;
chromosome1 GeneDB 3'-UTR 3551733 3551856 . + . mRNA SPAC17A2.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A2.01" ; systematic_id "SPAC17A2.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3552358 3552866 . - . mRNA SPAC17A2.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A2.02c" ; systematic_id "SPAC17A2.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3552867 3553739 . - . mRNA SPAC17A2.02c ; db_xref "SPD:11/11G10" ; systematic_id "SPAC17A2.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR114W and YJR116W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TMEM165 ortholog; date=20100718" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; gene "SPAC17A2.02c" ; product "DUF887 family protein" ;
chromosome1 GeneDB CDS 3552867 3553739 . - . mRNA SPAC17A2.02c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 3553738 3554117 . - . mRNA SPAC17A2.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A2.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3554552 3555270 . - . mRNA SPAC17A2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A2.03c" ; systematic_id "SPAC17A2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3555271 3556345 . - . mRNA SPAC17A2.03c ; systematic_id "SPAC17A2.03c" ; colour "7" ; gene "vma6 ||| SPAC17A2.03c" ; db_xref "SPD:43/43G04" ; Alias "vma6" ; GO "GO:0000220; vacuolar proton-transporting V-type ATPase, V0 domain
GO:0005524; ATP binding
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR447C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vma6" ; product "V-type ATPase V0 subunit d (predicted)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB CDS 3555271 3556282 . - . mRNA SPAC17A2.03c ; colour "7" ;
chromosome1 GeneDB CDS 3556326 3556345 . - . mRNA SPAC17A2.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 3556283 3556297 . - . misc_feature unknown_2978 ; note "ctaacattatttaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3556320 3556325 . - . misc_feature unknown_2979 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3556344 3556538 . - . mRNA SPAC17A2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3557029 3557046 . - . mRNA SPAC17A2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A2.04c" ; systematic_id "SPAC17A2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3557047 3558123 . - . mRNA SPAC17A2.04c ; systematic_id "SPAC17A2.04c" ; colour "7" ; gene "SPAC17A2.04c ||| cns1" ; Alias "cns1" ; db_xref "SPD:16/16F06" ; GO "GO:0031072; heat shock protein binding
GO:0006457; protein folding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR155W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cns1" ; product "HSP chaperone complex subunit Cns1 (predicted)" ;
chromosome1 GeneDB CDS 3557047 3558123 . - . mRNA SPAC17A2.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3558122 3558183 . - . mRNA SPAC17A2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 3558766 3559116 . + . misc_RNA SPNCRNA.124 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.124" ; synonym "SPNG671" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB tRNA 3559754 3559826 . - . tRNA SPATRNATRP.01 ; systematic_id "SPATRNATRP.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033423; CCA codon-amino acid adaptor activity" ; gene "SPATRNATRP.01" ; product "tRNA Tryptophan" ; note "tRNA Trp anticodon CCA, Cove score 68.85" ;
chromosome1 GeneDB 5'-UTR 3560548 3560730 . + . mRNA SPAC17A2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3560731 3562587 . + . mRNA SPAC17A2.05 ; systematic_id "SPAC17A2.05" ; colour "7" ; gene "SPAC17A2.05" ; Alias "osm1" ; db_xref "SPD:36/36H05" ; GO "GO:0016156; fumarate reductase (NADH) activity
GO:0006106; fumarate metabolism
GO:0005739; mitochondrion
GO:0005737; cytoplasm
GO:0006099; tricarboxylic acid cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR051W and YEL047C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "osm1" ; product "fumerate reductase (predicted)" ; reserved_name "osm1" ;
chromosome1 GeneDB CDS 3560731 3560941 . + . mRNA SPAC17A2.05 ; colour "7" ;
chromosome1 GeneDB CDS 3561257 3562587 . + . mRNA SPAC17A2.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 3560942 3560947 . + . misc_feature unknown_2980 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3561238 3561256 . + . misc_feature unknown_2981 ; note "ttaactaacaatcttttag, splice branch and acceptor sequ ence" ;
chromosome1 GeneDB 3'-UTR 3562588 3562856 . + . mRNA SPAC17A2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A2.05" ; systematic_id "SPAC17A2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3562948 3563010 . - . mRNA SPAC17A2.06c ; Alias "vps8" ; ID "SPAC17A2.06c" ; db_xref "SPD:39/39C10" ; systematic_id "SPAC17A2.06c" ; primary_name "vps8" ; gene "vps8 ||| SPAC17A2.06c" ; note "mRNA from spc07120" ;
chromosome1 GeneDB CDS_parts 3563011 3566829 . - . mRNA SPAC17A2.06c ; systematic_id "SPAC17A2.06c" ; colour "7" ; gene "vps8 ||| SPAC17A2.06c" ; Alias "vps8" ; db_xref "SPD:39/39C10" ; GO "GO:0045324; late endosome to vacuole transport
GO:0016567; protein ubiquitination
GO:0033263; CORVET complex
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YAL002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps8" ; product "WD repeat protein Vps8 (predicted)" ;
chromosome1 GeneDB CDS 3563011 3566829 . - . mRNA SPAC17A2.06c ; colour "7" ;
chromosome1 GeneDB CDS_parts 3567223 3567858 . - . mRNA SPAC17A2.07c ; db_xref "SPD:07/07C06" ; systematic_id "SPAC17A2.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis" ; gene "SPAC17A2.07c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3567223 3567638 . - . mRNA SPAC17A2.07c ; colour "8" ;
chromosome1 GeneDB CDS 3567741 3567858 . - . mRNA SPAC17A2.07c ; colour "8" ;
chromosome1 GeneDB misc_feature 3567639 3567654 . - . misc_feature unknown_2982 ; note "ttaacagtcggtgcag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 3567735 3567740 . - . misc_feature unknown_2983 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3567857 3567861 . - . mRNA SPAC17A2.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A2.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3568087 3568266 . - . mRNA SPAC17A2.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A2.08c" ; systematic_id "SPAC17A2.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3568267 3569079 . - . mRNA SPAC17A2.08c ; db_xref "SPD:10/10D09" ; systematic_id "SPAC17A2.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC17A2.08c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3568267 3569079 . - . mRNA SPAC17A2.08c ; colour "8" ;
chromosome1 GeneDB CDS_parts 3569155 3569511 . + . mRNA SPAC17A2.15 ; db_xref "SPD:04/04E08" ; systematic_id "SPAC17A2.15" ; controlled_curation "term=warning, below 100 amino acid size threshold; cv=warning; date=19700101" ; colour "6" ; gene "SPAC17A2.15" ; product "dubious" ;
chromosome1 GeneDB CDS 3569155 3569235 . + . mRNA SPAC17A2.15 ; colour "6" ;
chromosome1 GeneDB CDS 3569383 3569511 . + . mRNA SPAC17A2.15 ; colour "6" ;
chromosome1 GeneDB 3'-UTR 3570007 3570446 . - . mRNA SPAC17A2.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A2.09c" ; systematic_id "SPAC17A2.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3570447 3572345 . - . mRNA SPAC17A2.09c ; systematic_id "SPAC17A2.09c" ; colour "2" ; gene "csx1 ||| SPAC17A2.09c" ; Alias "csx1" ; db_xref "SPD:39/39F02" ; GO "GO:0005737; cytoplasm
GO:0010610; regulation or mRNA stability in response to oxidative stress
GO:0003729; mRNA binding
GO:0000932; cytoplasmic mRNA processing body
GO:0070935; 3' UTR mediated mRNA stabilization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YBR212W and YHR086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:14633985; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "csx1" ; product "RNA-binding protein Csx1" ;
chromosome1 GeneDB CDS 3570447 3572345 . - . mRNA SPAC17A2.09c ; colour "2" ;
chromosome1 GeneDB misc_feature 3572346 3580222 . + . misc_feature unknown_2984 ; note "gene free region, SPAC17A2.10 and SPAC17A2.11 were marked in this region, because of their size, but have very low correlation scores, and are in a region of unusual base composition. This region also has GC/AT deviation, GC rich on the top strand for the first 4 kb, then GC poor for the next 4 kb., similar to the composition of the mat mc loci" ;
chromosome1 GeneDB CDS_parts 3574995 3575687 . - . mRNA SPAC17A2.10c ; db_xref "SPD:08/08A10" ; systematic_id "SPAC17A2.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC17A2.10c" ; product "sequence orphan" ; note "largish ORF in compositionally biased region, probably not real. has odd translation. this is in region where botton strand is T rich, so lots of LLLFFFFLLFFLSFSFSFS ||| see comment on SPAC17A2.11, this region is the same but inverted orientation" ;
chromosome1 GeneDB CDS 3574995 3575687 . - . mRNA SPAC17A2.10c ; colour "8" ;
chromosome1 GeneDB CDS_parts 3577109 3577762 . + . mRNA SPAC17A2.11 ; db_xref "SPD:07/07E10" ; systematic_id "SPAC17A2.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC17A2.11" ; product "sequence orphan" ; note "see comment on SPAC17A2.10, this region is the same but inverted orientation ||| largish ORF in compositionally biased region, probably not real. has odd translation. this is in region where botton strand is T rich, so lots of LLLFFFFLLFFLSFSFSFS" ;
chromosome1 GeneDB CDS 3577109 3577762 . + . mRNA SPAC17A2.11 ; colour "8" ;
chromosome1 GeneDB misc_feature 3577863 3579022 . + . misc_feature unknown_2985 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG863 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 3579575 3580222 . + . mRNA SPAC17A2.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A2.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3580223 3582916 . + . mRNA SPAC17A2.12 ; db_xref "SPD:38/38H11" ; systematic_id "SPAC17A2.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=helicase C-terminal domain; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YOR191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0016585; chromatin remodeling complex
GO:0006338; chromatin remodeling
GO:0004003; ATP-dependent DNA helicase activity
GO:0006281; DNA repair
GO:0000790; nuclear chromatin
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAC17A2.12" ; product "ATP-dependent DNA helicase (predicted)" ;
chromosome1 GeneDB CDS 3580223 3582916 . + . mRNA SPAC17A2.12 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3582917 3582933 . + . mRNA SPAC17A2.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17A2.12" ; systematic_id "SPAC17A2.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3583128 3583249 . - . mRNA SPAC17A2.13c ; ID "SPAC17A2.13c" ; db_xref "SPD:24/24G12" ; systematic_id "SPAC17A2.13c" ; note "mRNA from AU011048" ;
chromosome1 GeneDB CDS_parts 3583250 3584779 . - . mRNA SPAC17A2.13c ; systematic_id "SPAC17A2.13c" ; colour "2" ; db_xref "SPD:24/24G12" ; Alias "rad25" ; GO "GO:0000077; DNA damage checkpoint
GO:0034613; cellular protein localization
GO:0007346; regulation of mitotic cell cycle
GO:0007095; mitotic cell cycle G2/M transition DNA damage checkpoint
GO:0004860; protein kinase inhibitor activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006270; DNA replication initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR099W and YER177W; date=19700101 ||| term=pathway, negative regulator of the Ras1-Byr2 signalling pathway, acting downstream of Ras1 and upstream of Byr2; db_xref=PMID:12242289; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "rad25" ; product "14-3-3 protein Rad25" ;
chromosome1 GeneDB CDS 3583250 3583995 . - . mRNA SPAC17A2.13c ; colour "2" ;
chromosome1 GeneDB CDS 3584713 3584779 . - . mRNA SPAC17A2.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 3583996 3584013 . - . misc_feature unknown_2986 ; note "ctaactgataatgtatag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB intron 3583996 3584712 . - . intron SPAC17A2.13c ; db_xref "SPD:24/24G12" ; systematic_id "SPAC17A2.13c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 3584707 3584712 . - . misc_feature unknown_2987 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3584778 3584805 . - . mRNA SPAC17A2.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A2.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3586182 3586434 . + . mRNA SPAC17A2.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17A2.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 3586218 3586423 . + . LTR unknown_2988 ; note "162 (+1) 85 295 TF1" ;
chromosome1 GeneDB CDS_parts 3586435 3588288 . + . mRNA SPAC17A2.14 ; systematic_id "SPAC17A2.14" ; colour "2" ; gene "SPAC17G6.01 ||| SPAC17A2.14" ; Alias "SPAC17G6.01" ; db_xref "SPD:26/26C02" ; synonym "SPAC17G6.01" ; GO "GO:0005887; integral to plasma membrane
GO:0015095; magnesium ion transporter activity
GO:0015693; magnesium ion transport
GO:0010045; response to nickel ion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL064W and YOL130W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "SPAC17G6.01" ; product "CorA family magnesium ion transporter" ;
chromosome1 GeneDB CDS 3586435 3588288 . + . mRNA SPAC17A2.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 3586931 3586991 . + . misc_feature unknown_2989 ; note "nominal overlap with cosmid SPAC17A2 and cosmid SPAC17G6" ;
chromosome1 GeneDB 3'-UTR 3588585 3588974 . - . mRNA SPAC17G6.02c ; Alias "tco1" ; ID "SPAC17G6.02c" ; db_xref "PMID:18276645 ||| SPD:13/13H11" ; systematic_id "SPAC17G6.02c" ; gene "SPAC17G6.02c ||| tco1" ; primary_name "tco1" ;
chromosome1 GeneDB misc_RNA 3588585 3591355 . - . misc_RNA SPNCRNA.600 ; systematic_id "SPNCRNA.600" ; controlled_curation "term=gene expression, alternative transcripts; db_xref=PMID:18276645; cv=gene_ex; date=20080903 ||| term=warning, in the current viewer tco1 gene is hidden behind SPNCRNA.600; cv=warning; date=20100125" ; GO "GO:0017148; negative regulation of translation
GO:0010630; regulation of transcription, start site selection" ; product "translationally silent transcript from tco1 locus" ;
chromosome1 GeneDB CDS_parts 3588975 3589949 . - . mRNA SPAC17G6.02c ; systematic_id "SPAC17G6.02c" ; colour "2" ; gene "SPAC17G6.02c ||| tco1" ; Alias "tco1" ; db_xref "SPD:13/13H11" ; GO "GO:0005886; plasma membrane
GO:0004012; phospholipid-translocating ATPase activity
GO:0034599; cellular response to oxidative stress
GO:0045332; phospholipid translocation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR049C and YER185W and YGR213C and YLR046C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal anchor; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, alternative transcripts; db_xref=PMID:18276645; cv=gene_ex; date=20080903 ||| term=warning, in the current viewer tco1 gene is hidden behind SPNCRNA.600; cv=warning; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100827" ; primary_name "tco1" ; product "RTA1-like protein" ;
chromosome1 GeneDB CDS 3588975 3589949 . - . mRNA SPAC17G6.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3589950 3590604 . - . mRNA SPAC17G6.02c ; Alias "tco1" ; ID "SPAC17G6.02c" ; db_xref "PMID:18276645" ; systematic_id "SPAC17G6.02c" ; gene "SPAC17G6.02c ||| tco1" ; primary_name "tco1" ;
chromosome1 GeneDB tRNA 3591948 3592044 . + . tRNA SPATRNALEU.03 ; systematic_id "SPATRNALEU.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033412; TAG codon-amino acid adaptor activity" ; gene "SPATRNALEU.03" ; product "tRNA Leucine" ; note "tRNA Leu anticodon TAG, Cove score 53.30" ;
chromosome1 GeneDB intron 3591985 3592002 . + . intron SPATRNALEU.03 ; systematic_id "SPATRNALEU.03" ; note "intron tRNA Leu anticodon TAG" ;
chromosome1 GeneDB misc_RNA 3592235 3592483 . + . misc_RNA SPNCRNA.226 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.226" ; synonym "SPNG688" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB 5'-UTR 3592942 3593054 . + . mRNA SPAC17G6.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G6.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3593055 3594962 . + . mRNA SPAC17G6.03 ; db_xref "SPD:37/37A04" ; systematic_id "SPAC17G6.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR202W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC17G6.03" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome1 GeneDB CDS 3593055 3594962 . + . mRNA SPAC17G6.03 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 3593112 3595196 . - . mRNA SPAC17G6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G6.04c" ; systematic_id "SPAC17G6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3594963 3594975 . + . mRNA SPAC17G6.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G6.03" ; systematic_id "SPAC17G6.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3595197 3596345 . - . mRNA SPAC17G6.04c ; systematic_id "SPAC17G6.04c" ; colour "2" ; gene "cpp1 ||| SPAC17G6.04c" ; Alias "cpp1" ; db_xref "SPD:18/18B06" ; GO "GO:0004660; protein farnesyltransferase activity
GO:0008270; zinc ion binding
GO:0010958; regulation of amino acid import
GO:0006995; cellular response to nitrogen starvation
GO:0018343; protein farnesylation
GO:0018343; protein farnesylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10617635; date=19700101 ||| term=orthologous to S. cerevisiae YDL090C; date=19700101 ||| term=phenotype, sensitive to canavanine; cv=phenotype; db_xref=PMID:10617635; date=20080602 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Rhb1; db_xref=PMID:16624901; date=20100823" ; primary_name "cpp1" ; product "protein farnesyltransferase beta subunit Cpp1" ; EC_number "2.5.1.58" ;
chromosome1 GeneDB CDS 3595197 3596345 . - . mRNA SPAC17G6.04c ; colour "2" ;
chromosome1 GeneDB CDS_parts 3596472 3598799 . - . mRNA SPAC17G6.05c ; db_xref "SPD:28/28D03" ; systematic_id "SPAC17G6.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL084W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006511; ubiquitin-dependent protein catabolism
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolism via the MVB pathway
GO:0005737; cytoplasm
GO:0005768; endosome" ; gene "SPAC17G6.05c" ; product "Rhophilin-2 homolog (predicted)" ;
chromosome1 GeneDB CDS 3596472 3598799 . - . mRNA SPAC17G6.05c ; colour "7" ;
chromosome1 GeneDB CDS_parts 3599103 3599576 . + . mRNA SPAC17G6.06 ; systematic_id "SPAC17G6.06" ; colour "7" ; gene "rps2401 ||| rps24-1 ||| rps24 ||| SPAC17G6.06" ; Alias "rps2401" ; db_xref "SPD:04/04D02" ; obsolete_name "rps24a" ; synonym "rps24-1 ||| rps24" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER074W and YIL069C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0006364; rRNA processing" ; primary_name "rps2401" ; product "40S ribosomal protein S24 (predicted)" ;
chromosome1 GeneDB CDS 3599103 3599171 . + . mRNA SPAC17G6.06 ; colour "7" ;
chromosome1 GeneDB CDS 3599241 3599576 . + . mRNA SPAC17G6.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 3599172 3599177 . + . misc_feature unknown_2990 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3599172 3599240 . + . intron SPAC17G6.06 ; Alias "rps2401" ; db_xref "SPD:04/04D02" ; systematic_id "SPAC17G6.06" ; primary_name "rps2401" ; gene "rps2401 ||| rps24-1 ||| rps24 ||| SPAC17G6.06" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3599221 3599240 . + . misc_feature unknown_2991 ; colour "6" ; note "ctaacatgagggcgttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3599577 3599783 . + . mRNA SPAC17G6.06 ; Alias "rps2401" ; ID "SPAC17G6.06" ; db_xref "SPD:04/04D02" ; systematic_id "SPAC17G6.06" ; primary_name "rps2401" ; gene "rps2401 ||| rps24-1 ||| rps24 ||| SPAC17G6.06" ; note "mRNA from AU007864" ;
chromosome1 GeneDB CDS_parts 3600187 3600855 . - . mRNA SPAC17G6.07c ; db_xref "SPD:42/42H02" ; systematic_id "SPAC17G6.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGL098W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005484; SNAP receptor activity
GO:0005789; endoplasmic reticulum membrane" ; gene "SPAC17G6.07c" ; product "SNARE Slt1 (predicted)" ;
chromosome1 GeneDB CDS 3600187 3600855 . - . mRNA SPAC17G6.07c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3600854 3600971 . - . mRNA SPAC17G6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3601742 3601878 . + . mRNA SPAC17G6.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G6.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3601879 3603489 . + . mRNA SPAC17G6.08 ; systematic_id "SPAC17G6.08" ; colour "7" ; gene "pep7 ||| vac1 ||| SPAC17G6.08" ; Alias "pep7" ; db_xref "SPD:25/25H01" ; synonym "vac1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=orthologous to S. cerevisiae YDR323C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0006896; Golgi to vacuole transport
GO:0006904; vesicle docking during exocytosis
GO:0006906; vesicle fusion" ; primary_name "pep7" ; product "prevacuole/endosomal FYVE tethering component Pep7 (predicted)" ;
chromosome1 GeneDB CDS 3601879 3603489 . + . mRNA SPAC17G6.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3603490 3603671 . + . mRNA SPAC17G6.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G6.08" ; systematic_id "SPAC17G6.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3604059 3604091 . + . mRNA SPAC17G6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3604092 3604913 . + . mRNA SPAC17G6.09 ; systematic_id "SPAC17G6.09" ; colour "7" ; gene "sec62 ||| SPAC17G6.09" ; Alias "sec62" ; db_xref "SPD:10/10F01" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006620; posttranslational protein targeting to membrane
GO:0031207; Sec62/Sec63 complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec62" ; product "ER protein translocation subcomplex subunit Sec62 (predicted)" ;
chromosome1 GeneDB CDS 3604092 3604913 . + . mRNA SPAC17G6.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3604914 3605487 . + . mRNA SPAC17G6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G6.09" ; systematic_id "SPAC17G6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3605651 3605797 . + . mRNA SPAC17G6.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G6.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3605798 3607381 . + . mRNA SPAC17G6.10 ; systematic_id "SPAC17G6.10" ; colour "2" ; gene "ssr1 ||| SPAC17G6.10" ; Alias "ssr1" ; db_xref "SPD:25/25E05" ; GO "GO:0016586; RSC complex
GO:0016514; SWI/SNF complex
GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0006338; chromatin remodeling
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Swi/Snf RSC; cv=name_description; date=20061009 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YFR037C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ssr1" ; product "SWI/SNF and RSC complex subunit Ssr1" ;
chromosome1 GeneDB CDS 3605798 3607381 . + . mRNA SPAC17G6.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3607382 3607410 . + . mRNA SPAC17G6.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G6.10" ; systematic_id "SPAC17G6.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3607467 3607828 . - . mRNA SPAC17G6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G6.11c" ; systematic_id "SPAC17G6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3607829 3609739 . - . mRNA SPAC17G6.11c ; db_xref "SPD:26/26F06" ; systematic_id "SPAC17G6.11c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR143W and YPR159W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0016021; integral to membrane
GO:0015926; glucosidase activity
GO:0006078; 1,6-beta-glucan biosynthesis
GO:0070880; fungal-type cell wall beta-glucan biosynthetic process
GO:0030148; sphingolipid biosynthetic process" ; gene "SPAC17G6.11c" ; product "glucosidase (predicted)" ;
chromosome1 GeneDB CDS 3607829 3609739 . - . mRNA SPAC17G6.11c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3609738 3610162 . - . mRNA SPAC17G6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 3610148 3611124 . + . misc_RNA SPNCRNA.227 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.227" ; synonym "SPNG689" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 3612082 3612123 . + . mRNA SPAC17G6.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G6.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3612124 3614883 . + . mRNA SPAC17G6.12 ; systematic_id "SPAC17G6.12" ; colour "2" ; gene "cul1 ||| pcu1 ||| SPAC17G6.12" ; Alias "cul1" ; db_xref "SPD:47/47B10" ; synonym "pcu1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9990507; date=20100708 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=deletion; db_xref=PMID:9990507; date=20100730 ||| term=modification, neddylated; cv=pt_mod; qualifier=required; db_xref=PMID:10880460; date=19700101 ||| term=orthologous to S. cerevisiae YDL132W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0019005; SCF ubiquitin ligase complex
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle
GO:0032876; negative regulation of DNA endoreduplication" ; primary_name "cul1" ; product "cullin 1" ;
chromosome1 GeneDB CDS 3612124 3612191 . + . mRNA SPAC17G6.12 ; colour "2" ;
chromosome1 GeneDB CDS 3612237 3612323 . + . mRNA SPAC17G6.12 ; colour "2" ;
chromosome1 GeneDB CDS 3612422 3612486 . + . mRNA SPAC17G6.12 ; colour "2" ;
chromosome1 GeneDB CDS 3612598 3612674 . + . mRNA SPAC17G6.12 ; colour "2" ;
chromosome1 GeneDB CDS 3612877 3614883 . + . mRNA SPAC17G6.12 ; colour "2" ;
chromosome1 GeneDB misc_feature 3612192 3612197 . + . misc_feature unknown_2992 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3612222 3612236 . + . misc_feature unknown_2993 ; colour "6" ; note "ctgatctatatgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3612324 3612329 . + . misc_feature unknown_2994 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3612402 3612421 . + . misc_feature unknown_2995 ; colour "6" ; note "cttacatactttatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3612487 3612492 . + . misc_feature unknown_2996 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3612581 3612597 . + . misc_feature unknown_2997 ; colour "6" ; note "ctaactgtatgtgctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3612675 3612680 . + . misc_feature unknown_2998 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3612861 3612876 . + . misc_feature unknown_2999 ; colour "6" ; note "ctaattggcgctttag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 3615585 3615625 . + . mRNA SPAC17G6.13 ; ID "SPAC17G6.13" ; systematic_id "SPAC17G6.13" ; gene "SPAC17G6.13" ; note "mRNA from SPRNASLT1" ;
chromosome1 GeneDB CDS_parts 3615626 3616927 . + . mRNA SPAC17G6.13 ; systematic_id "SPAC17G6.13" ; colour "8" ; gene "SPAC17G6.13" ; Alias "slt1" ; db_xref "SPD:22/22F04" ; GO "GO:0007126; meiosis
GO:0034605; cellular response to heat" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "slt1" ; product "sequence orphan Slt1" ;
chromosome1 GeneDB CDS 3615626 3616927 . + . mRNA SPAC17G6.13 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 3616928 3617100 . + . mRNA SPAC17G6.13 ; ID "SPAC17G6.13" ; db_xref "SPD:22/22F04" ; systematic_id "SPAC17G6.13" ; gene "SPAC17G6.13" ; note "mRNA from SPRNASLT1" ;
chromosome1 GeneDB 3'-UTR 3617071 3617540 . - . mRNA SPAC17G6.14c ; Alias "uap56" ; ID "SPAC17G6.14c" ; db_xref "SPD:22/22G01" ; systematic_id "SPAC17G6.14c" ; primary_name "uap56" ; gene "uap56 ||| SPAC17G6.14c" ; note "mRNA from SPD270" ;
chromosome1 GeneDB CDS_parts 3617541 3618845 . - . mRNA SPAC17G6.14c ; systematic_id "SPAC17G6.14c" ; colour "2" ; gene "uap56 ||| SPAC17G6.14c" ; Alias "uap56" ; db_xref "SPD:22/22G01" ; GO "GO:0005681; spliceosome complex
GO:0000346; transcription export complex
GO:0004004; ATP-dependent RNA helicase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006406; mRNA export from nucleus
GO:0000348; nuclear mRNA branch site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDL084W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=complementation, functionally complements S. cerevisiae SUB2; db_xref=PMID:11156603; date=20101012" ; primary_name "uap56" ; product "ATP-dependent RNA helicase Uap56" ;
chromosome1 GeneDB CDS 3617541 3618845 . - . mRNA SPAC17G6.14c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3618844 3618852 . - . mRNA SPAC17G6.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G6.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3619183 3619343 . - . mRNA SPAC17G6.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G6.15c" ; systematic_id "SPAC17G6.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3619344 3620626 . - . mRNA SPAC17G6.15c ; db_xref "SPD:20/20E07" ; systematic_id "SPAC17G6.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR271C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0006812; cation transport
GO:0005371; tricarboxylate carrier activity
GO:0006839; mitochondrial transport" ; gene "SPAC17G6.15c" ; product "MTC tricarboxylate transporter (predicted)" ;
chromosome1 GeneDB CDS 3619344 3619703 . - . mRNA SPAC17G6.15c ; colour "7" ;
chromosome1 GeneDB CDS 3619808 3620143 . - . mRNA SPAC17G6.15c ; colour "7" ;
chromosome1 GeneDB CDS 3620184 3620257 . - . mRNA SPAC17G6.15c ; colour "7" ;
chromosome1 GeneDB CDS 3620371 3620480 . - . mRNA SPAC17G6.15c ; colour "7" ;
chromosome1 GeneDB CDS 3620529 3620626 . - . mRNA SPAC17G6.15c ; colour "7" ;
chromosome1 GeneDB misc_feature 3619704 3619718 . - . misc_feature unknown_3000 ; colour "6" ; note "ctaatgtttgtatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3619802 3619807 . - . misc_feature unknown_3001 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3620144 3620154 . - . misc_feature unknown_3002 ; colour "6" ; note "ctaatcattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3620178 3620183 . - . misc_feature unknown_3003 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3620258 3620270 . - . misc_feature unknown_3004 ; colour "6" ; note "ttaacgattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3620365 3620370 . - . misc_feature unknown_3005 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3620481 3620493 . - . misc_feature unknown_3006 ; colour "6" ; note "ctaacatctgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3620523 3620528 . - . misc_feature unknown_3007 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3620625 3620668 . - . mRNA SPAC17G6.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17G6.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3620829 3621006 . - . mRNA SPAC17G6.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G6.16c" ; systematic_id "SPAC17G6.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3621007 3623644 . - . mRNA SPAC17G6.16c ; systematic_id "SPAC17G6.16c" ; colour "2" ; gene "ysh1 ||| SPAC17G6.16c" ; Alias "ysh1" ; db_xref "SPD:47/47A07" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation
GO:0004521; endoribonuclease activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR277C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ysh1" ; product "mRNA cleavage and polyadenylation specificity factor complex endoribonuclease subunit Ysh1" ;
chromosome1 GeneDB CDS 3621007 3621470 . - . mRNA SPAC17G6.16c ; colour "2" ;
chromosome1 GeneDB CDS 3621514 3622060 . - . mRNA SPAC17G6.16c ; colour "2" ;
chromosome1 GeneDB CDS 3622105 3623005 . - . mRNA SPAC17G6.16c ; colour "2" ;
chromosome1 GeneDB CDS 3623047 3623175 . - . mRNA SPAC17G6.16c ; colour "2" ;
chromosome1 GeneDB CDS 3623309 3623406 . - . mRNA SPAC17G6.16c ; colour "2" ;
chromosome1 GeneDB CDS 3623456 3623644 . - . mRNA SPAC17G6.16c ; colour "2" ;
chromosome1 GeneDB misc_feature 3621471 3621484 . - . misc_feature unknown_3008 ; colour "6" ; note "ctaaccattaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3621508 3621513 . - . misc_feature unknown_3009 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3622061 3622070 . - . misc_feature unknown_3010 ; colour "6" ; note "ctaattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3622099 3622104 . - . misc_feature unknown_3011 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3623006 3623019 . - . misc_feature unknown_3012 ; colour "6" ; note "ttaacaactcgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3623041 3623046 . - . misc_feature unknown_3013 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3623176 3623189 . - . misc_feature unknown_3014 ; colour "6" ; note "ctaacttaagcaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3623303 3623308 . - . misc_feature unknown_3015 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3623407 3623420 . - . misc_feature unknown_3016 ; colour "6" ; note "ctaatttttgctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3623450 3623455 . - . misc_feature unknown_3017 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3623742 3623868 . + . mRNA SPAC17G6.17 ; Alias "pof8" ; ID "SPAC17G6.17" ; systematic_id "SPAC17G6.17" ; primary_name "pof8" ; gene "pof8 ||| SPAC17G6.17" ; note "mRNA from AU012428" ;
chromosome1 GeneDB CDS_parts 3623869 3625077 . + . mRNA SPAC17G6.17 ; systematic_id "SPAC17G6.17" ; colour "2" ; gene "pof8 ||| SPAC17G6.17" ; note "Pof8 F-box is very degenerate, but is detectable by sequence similarty and confirmed by Skp1 binding assay PMID:15147268" ; Alias "pof8" ; db_xref "SPD:44/44A06" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0031146; SCF-dependent proteasomal ubiquitin- dependent protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; db_xref=PMID:15147268; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pof8" ; product "F-box protein Pof8" ;
chromosome1 GeneDB CDS 3623869 3625077 . + . mRNA SPAC17G6.17 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3625078 3625170 . + . mRNA SPAC17G6.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17G6.17" ; systematic_id "SPAC17G6.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3625574 3627544 . + . mRNA SPAC1142.01 ; systematic_id "SPAC1142.01" ; colour "10" ; gene "SPAC17G6.18 ||| SPAC1142.01" ; Alias "SPAC17G6.18" ; db_xref "SPD:46/46E07" ; synonym "SPAC17G6.18" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR333C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human TCF25 ortholog; date=20100718 ||| term=warning, gene structure updated; date=20080502" ; primary_name "SPAC17G6.18" ; product "DUF654 family protein" ;
chromosome1 GeneDB CDS 3625574 3627544 . + . mRNA SPAC1142.01 ; colour "10" ;
chromosome1 GeneDB misc_feature 3626756 3630810 . + . misc_feature unknown_3018 ; note "nominal overlap with cosmid SPAC17G6 EM:Z99162 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 3627703 3627844 . - . mRNA SPAC1142.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1142.02c" ; systematic_id "SPAC1142.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3627845 3628886 . - . mRNA SPAC1142.02c ; systematic_id "SPAC1142.02c" ; colour "7" ; gene "SPAC17G6.19c ||| SPAC1142.02c" ; Alias "SPAC17G6.19c" ; db_xref "SPD:15/15G10" ; synonym "SPAC17G6.19c" ; GO "GO:0016192; vesicle mediated transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR007C; date=19700101 ||| term=TPR repeat protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "SPAC17G6.19c" ; product "TPR repeat protein, SGT2 family (predicted)" ;
chromosome1 GeneDB CDS 3627845 3628074 . - . mRNA SPAC1142.02c ; colour "7" ;
chromosome1 GeneDB CDS 3628123 3628743 . - . mRNA SPAC1142.02c ; colour "7" ;
chromosome1 GeneDB CDS 3628784 3628886 . - . mRNA SPAC1142.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 3628075 3628091 . - . misc_feature unknown_3019 ; colour "6" ; note "ttaataagtgattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3628117 3628122 . - . misc_feature unknown_3020 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3628744 3628757 . - . misc_feature unknown_3021 ; colour "6" ; note "ctaaccaaaatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3628778 3628783 . - . misc_feature unknown_3022 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3628885 3628913 . - . mRNA SPAC1142.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1142.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3629015 3629172 . - . misc_feature unknown_3023 ; note "mRNA from AU009846 ||| 3'UTR fully annotated on cosmid c1142" ;
chromosome1 GeneDB 3'-UTR 3629015 3629172 . - . mRNA SPAC1142.03c ; Alias "swi2" ; ID "SPAC1142.03c" ; db_xref "SPD:46/46F03" ; systematic_id "SPAC1142.03c" ; gene "swi2 ||| SPAC17G6.20c ||| SPAC1142.03c" ; primary_name "swi2" ; note "mRNA from AU009846" ;
chromosome1 GeneDB CDS_parts 3629173 3631341 . - . mRNA SPAC1142.03c ; systematic_id "SPAC1142.03c" ; colour "2" ; gene "swi2 ||| SPAC17G6.20c ||| SPAC1142.03c" ; Alias "swi2" ; db_xref "SPD:46/46F03" ; synonym "SPAC17G6.20c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=related to S. pombe Sfr1 (C- term); date=19700101 ||| term=misc, focus formation at heterochromatic regions, Swi5_dependent; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=misc, focus formation at heterochromatic regions, Swi6_dependent; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0007533; mating type switching
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000790; nuclear chromatin
GO:0034974; Swi5-Swi2 complex" ; primary_name "swi2" ; product "Swi5 complex subunit Swi2" ;
chromosome1 GeneDB CDS 3629173 3631341 . - . mRNA SPAC1142.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3631340 3631448 . - . mRNA SPAC1142.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1142.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3631536 3633659 . + . mRNA SPAC1142.04 ; db_xref "SPD:37/37D08" ; systematic_id "SPAC1142.04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR206W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030691; Noc2p-Noc3p complex
GO:0005730; nucleolus
GO:0042254; ribosome biogenesis
GO:0000054; ribosome export from nucleus
GO:0030690; Noc1p-Noc2p complex" ; gene "SPAC1142.04" ; product "Noc complex subunit Noc2 family (predicted)" ;
chromosome1 GeneDB CDS 3631536 3633659 . + . mRNA SPAC1142.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3633660 3633874 . + . mRNA SPAC1142.04 ; ID "SPAC1142.04" ; db_xref "SPD:37/37D08" ; systematic_id "SPAC1142.04" ; gene "SPAC1142.04" ; note "mRNA from AU010274" ;
chromosome1 GeneDB rRNA 3634370 3634504 . + . rRNA SPRRNA.16 ; systematic_id "SPRRNA.16" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.16" ; product "5S rRNA" ; note "SPRG5SA yeast (s.pombe) 5s rRNA gene" ;
chromosome1 GeneDB 5'-UTR 3635409 3635764 . + . mRNA SPAC1142.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1142.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3635765 3636286 . + . mRNA SPAC1142.05 ; systematic_id "SPAC1142.05" ; colour "2" ; gene "ctr5 ||| SPAC1142.05" ; Alias "ctr5" ; db_xref "SPD:05/05B11" ; GO "GO:0005886; plasma membrane
GO:0046982; protein heterodimerization activity
GO:0006825; high-affinity copper ion transport
GO:0015679; plasma membrane copper ion transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Cuf1; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YLR411W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ctr5" ; product "copper transporter complex subunit Ctr5" ;
chromosome1 GeneDB CDS 3635765 3636286 . + . mRNA SPAC1142.05 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3636287 3636391 . + . mRNA SPAC1142.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1142.05" ; systematic_id "SPAC1142.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3637054 3637101 . + . mRNA SPAC1142.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1142.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3637102 3638091 . + . mRNA SPAC1142.06 ; systematic_id "SPAC1142.06" ; colour "7" ; gene "SPAC1142.06 ||| get3" ; Alias "get3" ; db_xref "SPD:14/14D05" ; GO "GO:0006875; metal ion homeostasis
GO:0071248; cellular response to metal ion
GO:0005783; endoplasmic reticulum
GO:0016887; ATPase activity
GO:0043529; GET complex
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0045048; protein insertion into ER membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL100c; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "get3" ; product "GET complex ATPase subunit Get3 (predicted)" ;
chromosome1 GeneDB CDS 3637102 3638091 . + . mRNA SPAC1142.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3638092 3638390 . + . mRNA SPAC1142.06 ; ID "SPAC1142.06" ; db_xref "SPD:14/14D05" ; systematic_id "SPAC1142.06" ; gene "SPAC1142.06 ||| get3" ; note "mRNA from AU008535" ;
chromosome1 GeneDB 3'-UTR 3638649 3638770 . - . mRNA SPAC1142.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1142.07c" ; systematic_id "SPAC1142.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3638771 3639560 . - . mRNA SPAC1142.07c ; systematic_id "SPAC1142.07c" ; colour "2" ; gene "vps32 ||| snf7 ||| SPAC1142.07c" ; Alias "vps32" ; db_xref "SPD:10/10A03" ; synonym "snf7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR025W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000815; ESCRT III complex
GO:0045324; late endosome to vacuole transport
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway" ; primary_name "vps32" ; product "ESCRT III complex subunit Vps32" ;
chromosome1 GeneDB CDS 3638771 3639264 . - . mRNA SPAC1142.07c ; colour "2" ;
chromosome1 GeneDB CDS 3639386 3639560 . - . mRNA SPAC1142.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 3639265 3639279 . - . misc_feature unknown_3024 ; colour "6" ; note "ctaacttacatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3639380 3639385 . - . misc_feature unknown_3025 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3639559 3639642 . - . mRNA SPAC1142.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1142.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3639860 3639987 . + . mRNA SPAC1142.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1142.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3639988 3642219 . + . mRNA SPAC1142.08 ; systematic_id "SPAC1142.08" ; colour "2" ; gene "fhl1 ||| SPAC1142.08 ||| SPAC8C9.01" ; Alias "fhl1" ; db_xref "SPD:38/38A12" ; synonym "SPAC8C9.01" ; GO "GO:0006355; regulation of transcription, DNA- dependent
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15777722; date=19700101 ||| term=fork head domain; date=19700101 ||| term=orthologous to S. cerevisiae YPR104C; attribution=R. Bulmer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DNA binding specificity, binds Homol E; qualifier=predicted; date=20100312 ||| term=DNA binding specificity, binds Homol D; qualifier=predicted; date=20100312" ; primary_name "fhl1" ; product "fork head transcription factor Fhl1" ; reserved_name "fhl1" ;
chromosome1 GeneDB CDS 3639988 3642219 . + . mRNA SPAC1142.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 3641089 3642754 . + . misc_feature unknown_3026 ; note "nominal overlap with cosmid SPAC8C9 and cosmid SPAC1142" ;
chromosome1 GeneDB 3'-UTR 3642220 3642338 . + . mRNA SPAC1142.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1142.08" ; systematic_id "SPAC1142.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3642498 3642845 . + . mRNA SPAC1142.09 ; db_xref "SPD:02/02B06" ; systematic_id "SPAC1142.09" ; synonym "SPAC8C9.02" ; controlled_curation "term=warning, appears to be part of transcript of adjacent gene; cv=warning; date=19700101" ; colour "6" ; gene "SPAC1142.09 ||| SPAC8C9.02" ; product "dubious" ;
chromosome1 GeneDB CDS 3642498 3642845 . + . mRNA SPAC1142.09 ; colour "6" ;
chromosome1 GeneDB 5'-UTR 3643046 3643238 . + . mRNA SPAC8C9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3643239 3644742 . + . mRNA SPAC8C9.03 ; systematic_id "SPAC8C9.03" ; colour "2" ; gene "cgs1 ||| SPAC8C9.03" ; Alias "cgs1" ; db_xref "SPD:24/24D06" ; GO "GO:0051447; negative regulation of progression through meiotic cell cycle
GO:0008603; cAMP-dependent protein kinase regulator activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human PPKAR2A and PPKAR2B ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:1657594; date=20100708 ||| term=phenotype, cell morphology, elongated cells; allele=cgs1-1; db_xref=PMID:7862141; date=20100708" ; primary_name "cgs1" ; product "cAMP-dependent protein kinase regulatory subunit Cgs1" ;
chromosome1 GeneDB CDS 3643239 3643368 . + . mRNA SPAC8C9.03 ; colour "2" ;
chromosome1 GeneDB CDS 3643634 3644742 . + . mRNA SPAC8C9.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3644743 3645581 . + . mRNA SPAC8C9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8C9.03" ; systematic_id "SPAC8C9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3646235 3646274 . + . mRNA SPAC8C9.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3646275 3648218 . + . mRNA SPAC8C9.04 ; db_xref "SPD:26/26H07" ; systematic_id "SPAC8C9.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; gene "SPAC8C9.04" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3646275 3648218 . + . mRNA SPAC8C9.04 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 3648219 3648883 . + . mRNA SPAC8C9.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8C9.04" ; systematic_id "SPAC8C9.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3649425 3649558 . + . mRNA SPAC8C9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3649559 3650465 . + . mRNA SPAC8C9.05 ; db_xref "SPD:12/12E04" ; systematic_id "SPAC8C9.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL219W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0006412; translation
GO:0019478; D-amino acid catabolism
GO:0016788; hydrolase activity, acting on ester bonds
GO:0005737; cytoplasm
GO:0051499; D-aminoacyl-tRNA deacylase activity" ; gene "SPAC8C9.05" ; product "D-Tyr-tRNA deacylase (predicted)" ;
chromosome1 GeneDB CDS 3649559 3649601 . + . mRNA SPAC8C9.05 ; colour "7" ;
chromosome1 GeneDB CDS 3649716 3649749 . + . mRNA SPAC8C9.05 ; colour "7" ;
chromosome1 GeneDB CDS 3649799 3649827 . + . mRNA SPAC8C9.05 ; colour "7" ;
chromosome1 GeneDB CDS 3649939 3650058 . + . mRNA SPAC8C9.05 ; colour "7" ;
chromosome1 GeneDB CDS 3650117 3650260 . + . mRNA SPAC8C9.05 ; colour "7" ;
chromosome1 GeneDB CDS 3650338 3650341 . + . mRNA SPAC8C9.05 ; colour "7" ;
chromosome1 GeneDB CDS 3650390 3650465 . + . mRNA SPAC8C9.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 3649602 3649607 . + . misc_feature unknown_3027 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3649699 3649715 . + . misc_feature unknown_3028 ; colour "6" ; note "ctaatacgagtttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3649750 3649755 . + . misc_feature unknown_3029 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3649786 3649798 . + . misc_feature unknown_3030 ; colour "6" ; note "ctaatccgcccag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3649828 3649833 . + . misc_feature unknown_3031 ; colour "6" ; note "gtgagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3649925 3649938 . + . misc_feature unknown_3032 ; colour "6" ; note "ctaataaaaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3650059 3650064 . + . misc_feature unknown_3033 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3650104 3650116 . + . misc_feature unknown_3034 ; colour "6" ; note "ttaacataattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3650261 3650266 . + . misc_feature unknown_3035 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3650322 3650337 . + . misc_feature unknown_3036 ; colour "6" ; note "ctaactatgattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3650342 3650347 . + . misc_feature unknown_3037 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3650375 3650389 . + . misc_feature unknown_3038 ; colour "6" ; note "ttaacccatgtatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3650466 3650629 . + . mRNA SPAC8C9.05 ; ID "SPAC8C9.05" ; db_xref "SPD:12/12E04" ; systematic_id "SPAC8C9.05" ; gene "SPAC8C9.05" ; note "mRNA from AU012150" ;
chromosome1 GeneDB CDS_parts 3650640 3653435 . - . mRNA SPAC8C9.06c ; systematic_id "SPAC8C9.06c" ; colour "7" ; gene "SPAC8C9.06c" ; note "this homology was assigned from recipriocal blast hits" ; db_xref "SPD:29/29D10" ; GO "GO:0005743; mitochondrial inner membrane
GO:0045182; translation regulator activity
GO:0016070; RNA metabolism
GO:0006417; regulation of translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PPR domains; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR067C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618" ; product "mitochondrial translation regulator (predicted)" ;
chromosome1 GeneDB CDS 3650640 3653435 . - . mRNA SPAC8C9.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3653434 3653993 . - . mRNA SPAC8C9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3654213 3654279 . + . mRNA SPAC8C9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3654280 3654714 . + . mRNA SPAC8C9.07 ; db_xref "SPD:03/03F08" ; systematic_id "SPAC8C9.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR068W; date=19700101 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Eukaryotes only; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820 ||| term=human CCDC59 ortholog; date=20100820" ; colour "7" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005634; nucleus
GO:0005730; nucleolus" ; gene "SPAC8C9.07" ; product "rRNA processing protein Fyv7 (predicted)" ;
chromosome1 GeneDB CDS 3654280 3654714 . + . mRNA SPAC8C9.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3654715 3654875 . + . mRNA SPAC8C9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8C9.07" ; systematic_id "SPAC8C9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 3655063 3655072 . + . promoter unknown_3039 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB promoter 3655080 3655087 . + . promoter unknown_3040 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB CDS_parts 3655144 3655971 . + . mRNA SPAC8C9.08 ; systematic_id "SPAC8C9.08" ; colour "7" ; gene "rps5 ||| SPAC8C9.08" ; Alias "rps5" ; db_xref "SPD:31/31H12" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rps5" ; product "40S ribosomal protein S5 (predicted)" ;
chromosome1 GeneDB CDS 3655144 3655253 . + . mRNA SPAC8C9.08 ; colour "7" ;
chromosome1 GeneDB CDS 3655470 3655971 . + . mRNA SPAC8C9.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 3655254 3655259 . + . misc_feature unknown_3041 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 3655254 3655469 . + . intron SPAC8C9.08 ; Alias "rps5" ; db_xref "SPD:31/31H12" ; systematic_id "SPAC8C9.08" ; primary_name "rps5" ; gene "rps5 ||| SPAC8C9.08" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3655457 3655469 . + . misc_feature unknown_3042 ; colour "6" ; note "ctaacttcattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3655972 3656142 . + . mRNA SPAC8C9.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8C9.08" ; systematic_id "SPAC8C9.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3656449 3657357 . - . mRNA SPAC8C9.09c ; systematic_id "SPAC8C9.09c" ; colour "8" ; gene "SPAC8C9.09c ||| mug129" ; db_xref "SPD:12/12E08" ; Alias "mug129" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug129" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3656449 3657357 . - . mRNA SPAC8C9.09c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 3657356 3657570 . - . mRNA SPAC8C9.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3658123 3658466 . - . mRNA SPAC8C9.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8C9.10c" ; systematic_id "SPAC8C9.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3658467 3659021 . - . mRNA SPAC8C9.10c ; db_xref "SPD:05/05F09" ; systematic_id "SPAC8C9.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL082C; qualifier=N_term; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0042273; ribosomal large subunit biogenesis and assembly
GO:0005730; nucleolus" ; gene "SPAC8C9.10c" ; product "ribosome biogenesis protein Rrp14-N (predicted)" ;
chromosome1 GeneDB CDS 3658467 3658832 . - . mRNA SPAC8C9.10c ; colour "7" ;
chromosome1 GeneDB CDS 3658878 3658961 . - . mRNA SPAC8C9.10c ; colour "7" ;
chromosome1 GeneDB CDS 3659007 3659021 . - . mRNA SPAC8C9.10c ; colour "7" ;
chromosome1 GeneDB misc_feature 3658833 3658849 . - . misc_feature unknown_3043 ; colour "6" ; note "ttaactgttcaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3658872 3658877 . - . misc_feature unknown_3044 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3658962 3658978 . - . misc_feature unknown_3045 ; colour "6" ; note "ttaattgagtatattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3659001 3659006 . - . misc_feature unknown_3046 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3659020 3659050 . - . mRNA SPAC8C9.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3659111 3659131 . + . mRNA SPAC8C9.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3659132 3659453 . + . mRNA SPAC8C9.11 ; db_xref "SPD:01/01G02" ; systematic_id "SPAC8C9.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL220W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human bola2 ortholog; date=20100718" ; colour "10" ; gene "SPAC8C9.11" ; product "BolA domain protein" ;
chromosome1 GeneDB CDS 3659132 3659191 . + . mRNA SPAC8C9.11 ; colour "10" ;
chromosome1 GeneDB CDS 3659271 3659453 . + . mRNA SPAC8C9.11 ; colour "10" ;
chromosome1 GeneDB misc_feature 3659192 3659197 . + . misc_feature unknown_3047 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3659256 3659270 . + . misc_feature unknown_3048 ; colour "6" ; note "ctgatacttatatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3659454 3659934 . + . mRNA SPAC8C9.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8C9.11" ; systematic_id "SPAC8C9.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 3659524 3660197 . + . misc_RNA SPNCRNA.228 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.228" ; synonym "SPNG693" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB CDS_parts 3660430 3660717 . + . mRNA SPAC8C9.19 ; db_xref "SPD:52/52E07" ; systematic_id "SPAC8C9.19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL127C-B; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC8C9.19" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 3660430 3660438 . + . mRNA SPAC8C9.19 ; colour "10" ;
chromosome1 GeneDB CDS 3660491 3660556 . + . mRNA SPAC8C9.19 ; colour "10" ;
chromosome1 GeneDB CDS 3660607 3660717 . + . mRNA SPAC8C9.19 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 3661145 3661487 . - . mRNA SPAC8C9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8C9.12c" ; systematic_id "SPAC8C9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3661488 3662399 . - . mRNA SPAC8C9.12c ; db_xref "SPD:12/12F05" ; systematic_id "SPAC8C9.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YJL133W and YKR052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005381; iron ion transmembrane transporter activity
GO:0034755; iron ion transport
GO:0005743; mitochondrial inner membrane
GO:0048250; mitochondrial iron ion transport
GO:0071805; potassium ion transmembrane transport
GO:0015992; proton transport" ; gene "SPAC8C9.12c" ; product "mitochondrial iron ion transporter (predicted)" ;
chromosome1 GeneDB CDS 3661488 3662399 . - . mRNA SPAC8C9.12c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3662398 3663178 . - . mRNA SPAC8C9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3663780 3664217 . + . misc_feature unknown_3049 ; note "previously annotated as dubious SPAC8C9.20, but has non consensus branch sites, and no coverage with transcriptome data" ;
chromosome1 GeneDB 5'-UTR 3665987 3666006 . + . mRNA SPAC8C9.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3666007 3668675 . + . mRNA SPAC8C9.14 ; systematic_id "SPAC8C9.14" ; colour "2" ; gene "prr1 ||| SPAC8C9.14" ; Alias "prr1" ; db_xref "SPD:38/38H04" ; GO "GO:0000156; two-component response regulator activity
GO:0000747; conjugation with cellular fusion
GO:0006355; regulation of transcription, DNA- dependent
GO:0034599; cellular response to oxidative stress
GO:0034599; cellular response to oxidative stress
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12596864; date=19700101 ||| term=orthologous to S. cerevisiae YGL073W and YHR206W and YOR140W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "prr1" ; product "transcription factor Prr1" ;
chromosome1 GeneDB CDS 3666007 3666036 . + . mRNA SPAC8C9.14 ; colour "2" ;
chromosome1 GeneDB CDS 3666134 3666223 . + . mRNA SPAC8C9.14 ; colour "2" ;
chromosome1 GeneDB CDS 3666980 3667059 . + . mRNA SPAC8C9.14 ; colour "2" ;
chromosome1 GeneDB CDS 3667113 3667170 . + . mRNA SPAC8C9.14 ; colour "2" ;
chromosome1 GeneDB CDS 3667314 3668675 . + . mRNA SPAC8C9.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 3666037 3666042 . + . misc_feature unknown_3050 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3666037 3666133 . + . intron SPAC8C9.14 ; Alias "prr1" ; db_xref "SPD:38/38H04" ; systematic_id "SPAC8C9.14" ; primary_name "prr1" ; gene "prr1 ||| SPAC8C9.14" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3666116 3666133 . + . misc_feature unknown_3051 ; colour "6" ; note "ctaacgttgttgaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3666224 3666229 . + . misc_feature unknown_3052 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 3666224 3666979 . + . intron SPAC8C9.14 ; Alias "prr1" ; db_xref "SPD:38/38H04" ; systematic_id "SPAC8C9.14" ; primary_name "prr1" ; gene "prr1 ||| SPAC8C9.14" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3666827 3666842 . + . misc_feature unknown_3053 ; colour "6" ; note "ctagctattcttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3666866 3666871 . + . misc_feature unknown_3054 ; colour "6" ; note "gtttgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3666961 3666979 . + . misc_feature unknown_3055 ; colour "6" ; note "ctaacttactgctttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3667060 3667065 . + . misc_feature unknown_3056 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB intron 3667060 3667112 . + . intron SPAC8C9.14 ; Alias "prr1" ; db_xref "SPD:38/38H04" ; systematic_id "SPAC8C9.14" ; primary_name "prr1" ; gene "prr1 ||| SPAC8C9.14" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3667101 3667112 . + . misc_feature unknown_3057 ; colour "6" ; note "ctaatcgtctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3667171 3667176 . + . misc_feature unknown_3058 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3667171 3667313 . + . intron SPAC8C9.14 ; Alias "prr1" ; db_xref "SPD:38/38H04" ; systematic_id "SPAC8C9.14" ; primary_name "prr1" ; gene "prr1 ||| SPAC8C9.14" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3667294 3667313 . + . misc_feature unknown_3059 ; colour "6" ; note "ctaatcattctcttctttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3668676 3669087 . + . mRNA SPAC8C9.14 ; Alias "prr1" ; ID "SPAC8C9.14" ; db_xref "SPD:38/38H04" ; systematic_id "SPAC8C9.14" ; primary_name "prr1" ; gene "prr1 ||| SPAC8C9.14" ; note "mRNA from AU008665" ;
chromosome1 GeneDB 3'-UTR 3669130 3669304 . - . mRNA SPAC8C9.15c ; Alias "tif225" ; ID "SPAC8C9.15c" ; db_xref "SPD:37/37H05" ; systematic_id "SPAC8C9.15c" ; primary_name "tif225" ; gene "tif225 ||| SPAC8C9.15c" ; note "mRNA from AU013722" ;
chromosome1 GeneDB CDS_parts 3669305 3671497 . - . mRNA SPAC8C9.15c ; systematic_id "SPAC8C9.15c" ; colour "7" ; gene "tif225 ||| SPAC8C9.15c" ; Alias "tif225" ; db_xref "SPD:37/37H05" ; GO "GO:0005851; eukaryotic translation initiation factor 2B complex
GO:0006413; translational initiation
GO:0003743; translation initiation factor activity
GO:0005085; guanyl-nucleotide exchange factor activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, leukoencephalopathy; date=20060926 ||| term=orthologous to S. cerevisiae YDR211W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, neurological disorders; date=20060926" ; primary_name "tif225" ; product "translation initiation factor eIF2B epsilon subunit (predicted)" ;
chromosome1 GeneDB CDS 3669305 3671096 . - . mRNA SPAC8C9.15c ; colour "7" ;
chromosome1 GeneDB CDS 3671166 3671290 . - . mRNA SPAC8C9.15c ; colour "7" ;
chromosome1 GeneDB CDS 3671334 3671395 . - . mRNA SPAC8C9.15c ; colour "7" ;
chromosome1 GeneDB CDS 3671440 3671497 . - . mRNA SPAC8C9.15c ; colour "7" ;
chromosome1 GeneDB misc_feature 3671097 3671117 . - . misc_feature unknown_3060 ; colour "6" ; note "ctaacacaatataacccacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3671160 3671165 . - . misc_feature unknown_3061 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3671291 3671303 . - . misc_feature unknown_3062 ; colour "6" ; note "ctaatattattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3671328 3671333 . - . misc_feature unknown_3063 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3671396 3671406 . - . misc_feature unknown_3064 ; colour "6" ; note "ctaatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3671434 3671439 . - . misc_feature unknown_3065 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3671978 3672532 . - . mRNA SPAC8C9.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8C9.16c" ; systematic_id "SPAC8C9.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3672533 3673099 . - . mRNA SPAC8C9.16c ; systematic_id "SPAC8C9.16c" ; colour "10" ; gene "SPAC8C9.16c ||| mug63" ; Alias "mug63" ; db_xref "SPD:06/06A01" ; GO "GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL196W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug63" ; product "TLDc domain protein 1" ;
chromosome1 GeneDB CDS 3672533 3673099 . - . mRNA SPAC8C9.16c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 3673098 3673350 . - . mRNA SPAC8C9.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3673737 3674299 . - . mRNA SPAC8C9.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC8C9.17c" ; systematic_id "SPAC8C9.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3674300 3674794 . - . mRNA SPAC8C9.17c ; systematic_id "SPAC8C9.17c" ; colour "2" ; gene "spc34 ||| SPAC8C9.17c" ; Alias "spc34" ; db_xref "SPD:04/04G06" ; GO "GO:0007052; mitotic spindle organization and biogenesis
GO:0042729; DASH complex
GO:0031134; sister chromatid biorientation
GO:0005816; spindle pole body
GO:0000778; condensed nuclear chromosome kinetochore
GO:0034613; cellular protein localization
GO:0000779; condensed chromosome, pericentric region" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16079915; date=19700101 ||| term=orthologous to S. cerevisiae YKR037C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "spc34" ; product "DASH complex subunit Spc34" ;
chromosome1 GeneDB CDS 3674300 3674794 . - . mRNA SPAC8C9.17c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3674793 3674835 . - . mRNA SPAC8C9.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC8C9.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3675055 3675525 . + . mRNA SPAC15A10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15A10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3675526 3677607 . + . mRNA SPAC15A10.01 ; systematic_id "SPAC15A10.01" ; colour "2" ; gene "atm1 ||| SPAC8C9.18 ||| SPAC15A10.01" ; note "probably regulates cellular iron homeostasis through the transport of mitochondrially synthesised Fe/S clusters (PMID:11493598)" ; Alias "atm1" ; db_xref "SPD:27/27G04" ; synonym "SPAC8C9.18" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YMR301C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0005524; ATP binding
GO:0042626; ATPase activity, coupled to transmembrane movement of substances
GO:0005381; iron ion transmembrane transporter activity
GO:0034599; cellular response to oxidative stress
GO:0006879; iron ion homeostasis
GO:0034755; iron ion transmembrane transport" ; primary_name "atm1" ; product "mitochondrial ABC family iron transporter Atm1" ;
chromosome1 GeneDB CDS 3675526 3677607 . + . mRNA SPAC15A10.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 3676204 3677398 . + . misc_feature unknown_3066 ; note "nominal overlap with cosmid SPAC8C9 and cosmid SPAC15A10" ;
chromosome1 GeneDB 3'-UTR 3677608 3677704 . + . mRNA SPAC15A10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15A10.01" ; systematic_id "SPAC15A10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3678025 3678084 . + . mRNA SPAC15A10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15A10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3678085 3679437 . + . mRNA SPAC15A10.02 ; systematic_id "SPAC15A10.02" ; colour "2" ; gene "taf12 ||| SPAC15A10.02" ; Alias "taf12" ; db_xref "SPD:20/20H11" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YDR145W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "taf12" ; product "transcription factor TFIID complex subunit A/ SAGA complex subunit" ;
chromosome1 GeneDB CDS 3678085 3679437 . + . mRNA SPAC15A10.02 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3679438 3679955 . + . mRNA SPAC15A10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15A10.02" ; systematic_id "SPAC15A10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3680502 3680586 . - . mRNA SPAC15A10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15A10.03c" ; systematic_id "SPAC15A10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3680587 3683145 . - . mRNA SPAC15A10.03c ; systematic_id "SPAC15A10.03c" ; colour "2" ; gene "rhp54 ||| rad54 ||| SPAC15A10.03c" ; Alias "rhp54" ; db_xref "SPD:39/39G01" ; synonym "rad54" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; qualifier=deletion; cv=phenotype; db_xref=PMID:8834792; date=19700101 ||| term=phenotype, sensitive to IR; qualifier=deletion; cv=phenotype; db_xref=PMID:8834792; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=high_penetrance|deletion; cv=phenotype; db_xref=PMID:8834792; date=19700101 ||| term=phenotype, nuclear morphology defects; qualifier=low_penetrance|deletion; cv=phenotype; db_xref=PMID:8834792; date=19700101 ||| term=phenotype, chromosome segregation defects, chromosome loss; qualifier=high_penetrance|deletion; cv=phenotype; db_xref=PMID:8834792; date=19700101 ||| term=phenotype, DNA recombination defects, meiotic; db_xref=PMID:18426916; residue=KEN26AAA; cv=phenotype; date=20091124 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:18426916; residue=KEN26AAA; qualifier=diploid; cv=phenotype; date=20091124 ||| term=disease associated, cancer; date=20060920 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YGL163C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, accumulation and persistence of Sfr1 foci in rhp54 delta cells; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, accumulation and persistence of Swi5 foci in rhp54 delta cells; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=modification, ubiquitinated; evidence=TAS; cv=pt_mod; db_xref=PMID:18426916; date=20091124 ||| term=protein sequence feature, KEN box; evidence=ISS; cv=sequence_feature; db_xref=PMID:18426916; date=20091124" ; GO "GO:0005524; ATP binding
GO:0003677; DNA binding
GO:0015616; DNA translocase activity
GO:0033170; DNA-protein loading ATPase activity
GO:0006281; DNA repair
GO:0006338; chromatin remodeling
GO:0000724; double-strand break repair via homologous recombination
GO:0030491; heteroduplex formation
GO:0006311; meiotic gene conversion
GO:0007131; reciprocal meiotic recombination" ; primary_name "rhp54" ; product "Rad54 homolog Rhp54" ;
chromosome1 GeneDB CDS 3680587 3683145 . - . mRNA SPAC15A10.03c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3683690 3683721 . - . mRNA SPAC15A10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15A10.04c" ; systematic_id "SPAC15A10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3683722 3685101 . - . mRNA SPAC15A10.04c ; systematic_id "SPAC15A10.04c" ; colour "7" ; gene "zpr1 ||| SPAC15A10.04c" ; Alias "zpr1" ; db_xref "SPD:21/21D05" ; GO "GO:0007346; regulation of mitotic cell cycle
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0031669; cellular response to nutrient levels
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR211W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "zpr1" ; product "EF-1 alpha binding zinc finger protein Zpr1 (predicted)" ;
chromosome1 GeneDB CDS 3683722 3685101 . - . mRNA SPAC15A10.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3685100 3685345 . - . mRNA SPAC15A10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15A10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3685727 3685759 . - . mRNA SPAC15A10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15A10.05c" ; systematic_id "SPAC15A10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3685760 3686721 . - . mRNA SPAC15A10.05c ; systematic_id "SPAC15A10.05c" ; colour "7" ; gene "SPAC15A10.05c ||| mug182" ; Alias "mug182" ; db_xref "SPD:13/13F06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL200C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human APOA1BP ortholog; date=20100226" ; GO "GO:0005739; mitochondrion
GO:0042817; pyridoxal metabolic process
GO:0004733; pyridoxamine-phosphate oxidase activity" ; primary_name "mug182" ; product "YjeF family pyridoxamine-phosphate oxidase (predicted)" ;
chromosome1 GeneDB CDS 3685760 3685989 . - . mRNA SPAC15A10.05c ; colour "7" ;
chromosome1 GeneDB CDS 3686074 3686489 . - . mRNA SPAC15A10.05c ; colour "7" ;
chromosome1 GeneDB CDS 3686530 3686600 . - . mRNA SPAC15A10.05c ; colour "7" ;
chromosome1 GeneDB CDS 3686710 3686721 . - . mRNA SPAC15A10.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 3685990 3686011 . - . misc_feature unknown_3067 ; colour "6" ; note "ttaacgaaatttatttgttta, splice branch and acceptor se quence" ;
chromosome1 GeneDB misc_feature 3686068 3686073 . - . misc_feature unknown_3068 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3686490 3686502 . - . misc_feature unknown_3069 ; colour "6" ; note "gtaacaaatttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3686524 3686529 . - . misc_feature unknown_3070 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3686601 3686613 . - . misc_feature unknown_3071 ; colour "6" ; note "ctaacatctgtag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3686704 3686709 . - . misc_feature unknown_3072 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3686720 3686777 . - . mRNA SPAC15A10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15A10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3687959 3688044 . + . mRNA SPAC15A10.17 ; systematic_id "SPAC15A10.17" ;
chromosome1 GeneDB CDS_parts 3688045 3688305 . + . mRNA SPAC15A10.17 ; Alias "coa2" ; synonym "new5" ; systematic_id "SPAC15A10.17" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0033617; mitochondrial respiratory chain complex IV assembly" ; controlled_curation "term=orthologous to S. cerevisiae YPL189C-A; date=20090716 ||| term=conserved in Fungi; date=20100427 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "coa2" ; product "cytochrome C oxidase assembly factor Coa2 (predicted)" ;
chromosome1 GeneDB CDS 3688045 3688305 . + . mRNA SPAC15A10.17 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3688306 3688486 . + . mRNA SPAC15A10.17 ; systematic_id "SPAC15A10.17" ;
chromosome1 GeneDB CDS_parts 3689230 3691125 . + . mRNA SPAC15A10.06 ; db_xref "SPD:26/26E07" ; systematic_id "SPAC15A10.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR456W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0016021; integral to membrane
GO:0015386; potassium:hydrogen antiporter activity
GO:0015385; sodium:hydrogen antiporter activity
GO:0006813; potassium ion transport
GO:0006885; regulation of pH
GO:0006814; sodium ion transport" ; colour "7" ; gene "SPAC15A10.06" ; product "CPA1 sodium ion/proton antiporter (predicted)" ;
chromosome1 GeneDB CDS 3689230 3689260 . + . mRNA SPAC15A10.06 ; colour "7" ;
chromosome1 GeneDB CDS 3689322 3689638 . + . mRNA SPAC15A10.06 ; colour "7" ;
chromosome1 GeneDB CDS 3689722 3690441 . + . mRNA SPAC15A10.06 ; colour "7" ;
chromosome1 GeneDB CDS 3690484 3691125 . + . mRNA SPAC15A10.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 3689261 3689266 . + . misc_feature unknown_3073 ; colour "6" ; note "gtatag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3689307 3689321 . + . misc_feature unknown_3074 ; colour "6" ; note "ctgacaatgttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3689639 3689644 . + . misc_feature unknown_3075 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3689709 3689721 . + . misc_feature unknown_3076 ; colour "6" ; note "ctaaccaatatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3690442 3690447 . + . misc_feature unknown_3077 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3690468 3690483 . + . misc_feature unknown_3078 ; colour "6" ; note "tactaacttgcctaag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB CDS_parts 3691307 3691879 . + . mRNA SPAC15A10.07 ; db_xref "SPD:06/06B02" ; systematic_id "SPAC15A10.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC15A10.07" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3691307 3691879 . + . mRNA SPAC15A10.07 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 3692824 3692834 . + . mRNA SPAC15A10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15A10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3692835 3694891 . + . mRNA SPAC15A10.08 ; systematic_id "SPAC15A10.08" ; colour "2" ; gene "ain1 ||| SPAC15A10.08" ; Alias "ain1" ; db_xref "SPD:46/46D09" ; GO "GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0003779; actin binding
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0051017; actin filament bundle formation
GO:0030674; protein binding, bridging
GO:0051764; actin cross link formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=calponin homology (CH) domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ain1" ; product "alpha-actinin" ;
chromosome1 GeneDB CDS 3692835 3692884 . + . mRNA SPAC15A10.08 ; colour "2" ;
chromosome1 GeneDB CDS 3692936 3693162 . + . mRNA SPAC15A10.08 ; colour "2" ;
chromosome1 GeneDB CDS 3693303 3694891 . + . mRNA SPAC15A10.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 3692885 3692890 . + . misc_feature unknown_3079 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3692919 3692935 . + . misc_feature unknown_3080 ; colour "6" ; note "tagtaacaaacgcgtag, splice branch and acceptor sequen ce" ;
chromosome1 GeneDB misc_feature 3693163 3693168 . + . misc_feature unknown_3081 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3693288 3693302 . + . misc_feature unknown_3082 ; colour "6" ; note "ctaaatatttcatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 3694892 3694971 . + . mRNA SPAC15A10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15A10.08" ; systematic_id "SPAC15A10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3695132 3695161 . - . mRNA SPAC15A10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15A10.09c" ; systematic_id "SPAC15A10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3695162 3696028 . - . mRNA SPAC15A10.09c ; systematic_id "SPAC15A10.09c" ; colour "7" ; gene "SPAC15A10.09c" ; note "this is not in the current release of Pfam, but should be built into SUR7 family shortly" ; db_xref "SPD:11/11F08" ; GO "GO:0005887; integral to plasma membrane
GO:0031505; cell wall organization and biogenesis
GO:0006665; sphingolipid metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR414C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; product "SUR7 family protein (predicted)" ;
chromosome1 GeneDB CDS 3695162 3696028 . - . mRNA SPAC15A10.09c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3696027 3696399 . - . mRNA SPAC15A10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15A10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3697508 3699837 . + . mRNA SPAC15A10.10 ; systematic_id "SPAC15A10.10" ; colour "7" ; gene "mde6 ||| SPAC15A10.10" ; Alias "mde6" ; db_xref "SPD:28/28D04" ; GO "GO:0045132; meiotic chromosome segregation
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kelch repeat protein; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; primary_name "mde6" ; product "Muskelin homolog (predicted)" ;
chromosome1 GeneDB CDS 3697508 3697752 . + . mRNA SPAC15A10.10 ; colour "7" ;
chromosome1 GeneDB CDS 3697795 3698368 . + . mRNA SPAC15A10.10 ; colour "7" ;
chromosome1 GeneDB CDS 3698421 3698527 . + . mRNA SPAC15A10.10 ; colour "7" ;
chromosome1 GeneDB CDS 3698570 3699310 . + . mRNA SPAC15A10.10 ; colour "7" ;
chromosome1 GeneDB CDS 3699359 3699538 . + . mRNA SPAC15A10.10 ; colour "7" ;
chromosome1 GeneDB CDS 3699582 3699837 . + . mRNA SPAC15A10.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 3697753 3697758 . + . misc_feature unknown_3083 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3697781 3697794 . + . misc_feature unknown_3084 ; colour "6" ; note "ctaacagttttaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3698369 3698374 . + . misc_feature unknown_3085 ; colour "6" ; note "gtacct, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3698400 3698420 . + . misc_feature unknown_3086 ; colour "6" ; note "ttaacagttatcctcatacag, splice branch and acceptor se quence" ;
chromosome1 GeneDB misc_feature 3698528 3698533 . + . misc_feature unknown_3087 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3698558 3698569 . + . misc_feature unknown_3088 ; colour "6" ; note "ttaacgtattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_RNA 3699381 3700010 . - . misc_RNA SPNCRNA.18 ; Alias "meu16" ; db_xref "EMBL:AB084830 ||| PMID:12597277" ; systematic_id "SPNCRNA.18" ; synonym "prl18" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; qualifier=predicted; db_xref=EMBL:AB084830; date=20050412 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103" ; primary_name "meu16" ; product "antisense RNA" ;
chromosome1 GeneDB misc_feature 3699539 3699544 . + . misc_feature unknown_3089 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3699567 3699581 . + . misc_feature unknown_3090 ; colour "6" ; note "ctaatcataatttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB tRNA 3700665 3700737 . + . tRNA SPATRNACYS.03 ; systematic_id "SPATRNACYS.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033455; GCA codon-amino acid adaptor activity" ; gene "SPATRNACYS.03" ; product "tRNA Cysteine" ; note "tRNA Cys anticodon GCA, Cove score 70.58" ;
chromosome1 GeneDB tRNA 3701556 3701628 . + . tRNA SPATRNAPHE.01 ; systematic_id "SPATRNAPHE.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033459; GAA codon-amino acid adaptor activity" ; gene "SPATRNAPHE.01" ; product "tRNA Phenylalanine" ; note "tRNA Phe anticodon GAA, Cove score 69.56" ;
chromosome1 GeneDB 5'-UTR 3702508 3702794 . + . mRNA SPAC15A10.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15A10.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3702795 3708953 . + . mRNA SPAC15A10.11 ; systematic_id "SPAC15A10.11" ; colour "7" ; gene "ubr11 ||| SPAC15A10.11" ; Alias "ubr11" ; db_xref "SPD:34/34C02" ; GO "GO:0005634; nucleus
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=zf-UBR1 type; date=20060726 ||| term=orthologous to S. cerevisiae YGR184C and YLR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ubr11" ; product "N-end-recognizing protein (predicted)" ;
chromosome1 GeneDB CDS 3702795 3708953 . + . mRNA SPAC15A10.11 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3708954 3708996 . + . mRNA SPAC15A10.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15A10.11" ; systematic_id "SPAC15A10.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3709206 3709804 . - . mRNA SPAC15A10.12c ; db_xref "SPD:02/02C09" ; systematic_id "SPAC15A10.12c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, X-linked spondyloepiphyseal dysplasia tarda; date=20060929 ||| term=orthologous to S. cerevisiae YEL048C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TRAPPC2L ortholog; date=20090204 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; GO "GO:0005794; Golgi apparatus
GO:0006888; ER to Golgi vesicle-mediated transport" ; colour "7" ; gene "SPAC15A10.12c" ; product "TRAPP complex subunit 2-like (predicted)" ;
chromosome1 GeneDB CDS 3709206 3709346 . - . mRNA SPAC15A10.12c ; colour "7" ;
chromosome1 GeneDB CDS 3709499 3709804 . - . mRNA SPAC15A10.12c ; colour "7" ;
chromosome1 GeneDB tRNA 3710739 3710821 . - . tRNA SPATRNAVAL.04 ; systematic_id "SPATRNAVAL.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033442; AAC codon-amino acid adaptor activity" ; gene "SPATRNAVAL.04" ; product "tRNA Valine" ; note "tRNA Val anticodon AAC, Cove score 64.30" ;
chromosome1 GeneDB misc_feature 3710775 3710783 . - . misc_feature unknown_3091 ; colour "3" ; note "potential intron in tRNA-Val" ;
chromosome1 GeneDB misc_RNA 3710909 3711379 . + . misc_RNA SPNCRNA.229 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.229" ; synonym "SPNG701" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 3711522 3711545 . + . mRNA SPAC15A10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15A10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3711546 3713760 . + . mRNA SPAC15A10.13 ; systematic_id "SPAC15A10.13" ; colour "2" ; gene "ppk3 ||| SPAC15A10.13" ; note "protein kinase, possibly false positive?" ; Alias "ppk3" ; db_xref "SPD:46/46F11" ; GO "GO:0006409; tRNA export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=20070219 ||| term=orthologous to S. cerevisiae YOR112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk3" ; product "HEAT repeat protein Ppk3" ;
chromosome1 GeneDB CDS 3711546 3711671 . + . mRNA SPAC15A10.13 ; colour "2" ;
chromosome1 GeneDB CDS 3711721 3711861 . + . mRNA SPAC15A10.13 ; colour "2" ;
chromosome1 GeneDB CDS 3711913 3712014 . + . mRNA SPAC15A10.13 ; colour "2" ;
chromosome1 GeneDB CDS 3712067 3712927 . + . mRNA SPAC15A10.13 ; colour "2" ;
chromosome1 GeneDB CDS 3712968 3713096 . + . mRNA SPAC15A10.13 ; colour "2" ;
chromosome1 GeneDB CDS 3713147 3713319 . + . mRNA SPAC15A10.13 ; colour "2" ;
chromosome1 GeneDB CDS 3713379 3713760 . + . mRNA SPAC15A10.13 ; colour "2" ;
chromosome1 GeneDB misc_feature 3711672 3711677 . + . misc_feature unknown_3092 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3711701 3711720 . + . misc_feature unknown_3093 ; colour "6" ; note "tacttacaattttaatgtag, splice branch and acceptor seq uence" ;
chromosome1 GeneDB misc_feature 3711862 3711867 . + . misc_feature unknown_3094 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3711899 3711912 . + . misc_feature unknown_3095 ; colour "6" ; note "tactaatagttcag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3712015 3712020 . + . misc_feature unknown_3096 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3712048 3712066 . + . misc_feature unknown_3097 ; colour "6" ; note "ctaatttaaacgtgtttag, splice branch and acceptor sequ ence" ;
chromosome1 GeneDB misc_feature 3712928 3712933 . + . misc_feature unknown_3098 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3712953 3712967 . + . misc_feature unknown_3099 ; colour "6" ; note "ctaattagtatacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3713097 3713102 . + . misc_feature unknown_3100 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3713134 3713146 . + . misc_feature unknown_3101 ; colour "6" ; note "ttaacagatttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3713320 3713325 . + . misc_feature unknown_3102 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3713356 3713378 . + . misc_feature unknown_3103 ; colour "6" ; note "splice branch and acceptor sequence. tactaactttttgac gttattag" ;
chromosome1 GeneDB 3'-UTR 3713761 3713830 . + . mRNA SPAC15A10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15A10.13" ; systematic_id "SPAC15A10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3714161 3714186 . + . mRNA SPAC15A10.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15A10.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3714187 3716313 . + . mRNA SPAC15A10.15 ; systematic_id "SPAC15A10.15" ; colour "2" ; gene "sgo2 ||| SPAC15A10.15" ; Alias "sgo2" ; db_xref "SPD:46/46E12" ; GO "GO:0000780; condensed nuclear chromosome, pericentric region
GO:0000792; heterochromatin
GO:0000778; kinetochore
GO:0072356; chromosome passenger complex localization to kinetochore
GO:0045143; homologous chromosome segregation
GO:0000070; mitotic sister chromatid segregation
GO:0034501; protein localization to kinetochore" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14730319; date=19700101 ||| term=localization dependent on Bub1p; db_xref=PMID:14730319; date=19700101 ||| term=human hsgo1 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YOR073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, ShuGOshin; cv=name_description; date=20090817" ; primary_name "sgo2" ; product "inner centromere protein, shugoshin Sgo2" ;
chromosome1 GeneDB CDS 3714187 3714223 . + . mRNA SPAC15A10.15 ; colour "2" ;
chromosome1 GeneDB CDS 3714262 3714301 . + . mRNA SPAC15A10.15 ; colour "2" ;
chromosome1 GeneDB CDS 3714352 3714584 . + . mRNA SPAC15A10.15 ; colour "2" ;
chromosome1 GeneDB CDS 3714628 3714695 . + . mRNA SPAC15A10.15 ; colour "2" ;
chromosome1 GeneDB CDS 3714748 3716313 . + . mRNA SPAC15A10.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 3714224 3714229 . + . misc_feature unknown_3104 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3714250 3714261 . + . misc_feature unknown_3105 ; colour "6" ; note "ctgatgaattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3714302 3714307 . + . misc_feature unknown_3106 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3714337 3714351 . + . misc_feature unknown_3107 ; colour "6" ; note "ttaacacatacaaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3714585 3714590 . + . misc_feature unknown_3108 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3714614 3714627 . + . misc_feature unknown_3109 ; colour "6" ; note "ctaattgaacacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 3714696 3714701 . + . misc_feature unknown_3110 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3714734 3714747 . + . misc_feature unknown_3111 ; colour "6" ; note "ctaacgtctgaaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 3716314 3716472 . + . mRNA SPAC15A10.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15A10.15" ; systematic_id "SPAC15A10.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3716643 3716805 . + . mRNA SPAC15A10.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15A10.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3716806 3720963 . + . mRNA SPAC15A10.16 ; systematic_id "SPAC15A10.16" ; colour "2" ; gene "bud6 ||| aip3 ||| fat1 ||| SPAC15A10.16 ||| SPAC15E1.01" ; Alias "bud6" ; db_xref "SPD:30/30F12" ; synonym "aip3 ||| fat1 ||| SPAC15E1.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR319C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=localization dependent on vesicular traffic; date=20090826 ||| term=localization dependent on Tea1; date=20090826 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003779; actin binding
GO:0005515; protein binding
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0005515; protein binding
GO:0030478; actin cap" ; primary_name "bud6" ; product "actin interacting protein 3 homolog Bud6" ;
chromosome1 GeneDB CDS 3716806 3720963 . + . mRNA SPAC15A10.16 ; colour "2" ;
chromosome1 GeneDB misc_feature 3719871 3719905 . + . misc_feature unknown_3112 ; note "nominal overlap with cosmid SPAC15E1 and cosmid SPAC15A10" ;
chromosome1 GeneDB 3'-UTR 3721257 3721309 . - . mRNA SPAC15E1.02c ; ID "SPAC15E1.02c" ; db_xref "SPD:03/03H01" ; systematic_id "SPAC15E1.02c" ; gene "SPAC15E1.02c" ; note "mRNA from AF087837" ;
chromosome1 GeneDB CDS_parts 3721310 3721756 . - . mRNA SPAC15E1.02c ; db_xref "SPD:03/03H01" ; systematic_id "SPAC15E1.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC15E1.02c" ; product "DUF1761 family protein" ;
chromosome1 GeneDB CDS 3721310 3721756 . - . mRNA SPAC15E1.02c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 3721757 3721816 . - . mRNA SPAC15E1.02c ; ID "SPAC15E1.02c" ; systematic_id "SPAC15E1.02c" ; gene "SPAC15E1.02c" ; note "mRNA from AU007432" ;
chromosome1 GeneDB 5'-UTR 3722471 3722508 . + . mRNA SPAC15E1.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15E1.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3722509 3723019 . + . mRNA SPAC15E1.03 ; systematic_id "SPAC15E1.03" ; colour "2" ; gene "rpl36a ||| SPAC15E1.03 ||| rpl42" ; Alias "rpl42" ; db_xref "SPD:42/42C01" ; synonym "rpl36a" ; controlled_curation "term=orthologous to S. cerevisiae YNL162W and YHR141C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=target of Set13; qualifier=methylated_by; db_xref=PMID:20444689; date=20100628 ||| term=modification, methylated; residue=lys55; db_xref=PMID:20444689; evidence=IDA; date=20100628" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl42" ; product "60S ribosomal protein L36/L42" ;
chromosome1 GeneDB CDS 3722509 3722808 . + . mRNA SPAC15E1.03 ; colour "2" ;
chromosome1 GeneDB CDS 3722999 3723019 . + . mRNA SPAC15E1.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 3722809 3722814 . + . misc_feature unknown_3113 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3722809 3722998 . + . intron SPAC15E1.03 ; Alias "rpl36a" ; db_xref "SPD:42/42C01" ; systematic_id "SPAC15E1.03" ; primary_name "rpl36a" ; gene "rpl36a ||| SPAC15E1.03 ||| rpl42" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3722983 3722998 . + . misc_feature unknown_3114 ; colour "6" ; note "ctaacaatcattttag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 3723794 3723832 . + . mRNA SPAC15E1.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15E1.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3723833 3725710 . + . mRNA SPAC15E1.04 ; systematic_id "SPAC15E1.04" ; colour "7" ; gene "SPAC15E1.04" ; note "SPAC15E1.04 is similar to YOR074 at the C-term, but has an N-terminal flavoprotein domain" ; db_xref "SPD:26/26D03" ; GO "GO:0004799; thymidylate synthase activity
GO:0006231; dTMP biosynthesis
GO:0050660; FAD binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR074C (C-term); date=19700101 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20071003 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "thymidylate synthase (predicted)" ; EC_number "2.1.1.45" ;
chromosome1 GeneDB CDS 3723833 3725710 . + . mRNA SPAC15E1.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3725711 3725714 . + . mRNA SPAC15E1.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15E1.04" ; systematic_id "SPAC15E1.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3725837 3725921 . - . mRNA SPAC15E1.05c ; ID "SPAC15E1.05c" ; db_xref "SPD:18/18B12" ; systematic_id "SPAC15E1.05c" ; gene "SPAC15E1.05c" ; note "mRNA from SPD199" ;
chromosome1 GeneDB CDS_parts 3725922 3727074 . - . mRNA SPAC15E1.05c ; db_xref "SPD:18/18B12" ; systematic_id "SPAC15E1.05c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR007W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004306; ethanolamine-phosphate cytidylyltransferase activity
GO:0006646; phosphatidylethanolamine biosynthesis" ; gene "SPAC15E1.05c" ; product "ethanolamine-phosphate cytidylyltransferase (predicted)" ; EC_number "2.7.7.14" ;
chromosome1 GeneDB CDS 3725922 3726952 . - . mRNA SPAC15E1.05c ; colour "7" ;
chromosome1 GeneDB CDS 3727008 3727074 . - . mRNA SPAC15E1.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 3726953 3726966 . - . misc_feature unknown_3115 ; colour "6" ; note "ctaacactctatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3727002 3727007 . - . misc_feature unknown_3116 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3727073 3727255 . - . mRNA SPAC15E1.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15E1.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3727360 3727462 . + . mRNA SPAC15E1.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15E1.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3727463 3728104 . + . mRNA SPAC15E1.06 ; systematic_id "SPAC15E1.06" ; colour "2" ; gene "vps29 ||| SPAC15E1.06" ; Alias "vps29" ; db_xref "SPD:42/42F04" ; GO "GO:0030904; retromer complex
GO:0030904; retromer complex
GO:0006886; intracellular protein transport
GO:0030437; sporulation (sensu Fungi)
GO:0016787; hydrolase activity
GO:0042147; retrograde transport, endosome to Golgi
GO:0005768; endosome
GO:0005768; endosome" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "vps29" ; product "retromer complex subunit Vps29" ;
chromosome1 GeneDB CDS 3727463 3727525 . + . mRNA SPAC15E1.06 ; colour "2" ;
chromosome1 GeneDB CDS 3727604 3728104 . + . mRNA SPAC15E1.06 ; colour "2" ;
chromosome1 GeneDB misc_feature 3727526 3727531 . + . misc_feature unknown_3117 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3727582 3727603 . + . misc_feature unknown_3118 ; colour "6" ; note "ctaatttaaatattaaatgaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3728105 3728136 . + . mRNA SPAC15E1.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC15E1.06" ; systematic_id "SPAC15E1.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3728516 3729034 . - . mRNA SPAC15E1.07c ; systematic_id "SPAC15E1.07c" ; colour "2" ; gene "moa1 ||| mug159 ||| SPAC15E1.07c" ; Alias "moa1" ; db_xref "SPD:05/05B07" ; synonym "mug159" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; qualifier=during_meiosis_I; db_xref=PMID:12748297; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, MOnopolar Attatchment; cv=name_description; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0000939; inner kinetochore of condensed chromosome
GO:0005515; protein binding
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0045132; meiotic chromosome segregation
GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination
GO:0051754; meiotic sister chromatid cohesion, centromeric
GO:0051177; meiotic sister chromatid cohesion
GO:0034613; cellular protein localization" ; primary_name "moa1" ; product "meiotic cohesin complex associated protein Moa1" ;
chromosome1 GeneDB CDS 3728516 3729034 . - . mRNA SPAC15E1.07c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3729787 3729806 . + . mRNA SPAC15E1.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15E1.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3729807 3730991 . + . mRNA SPAC15E1.08 ; systematic_id "SPAC15E1.08" ; colour "7" ; gene "SPAC15E1.08" ; Alias "naa10" ; db_xref "SPD:18/18G11" ; synonym "ard1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; GO "GO:0005737; cytoplasm
GO:0004596; peptide alpha-N-acetyltransferase activity
GO:0031415; NatA complex
GO:0017196; N-terminal peptidyl-methionine acetylation" ; primary_name "naa10" ; product "NatA N-acetyltransferase complex catalytic subunit Naa10 (predicted)" ;
chromosome1 GeneDB CDS 3729807 3729897 . + . mRNA SPAC15E1.08 ; colour "7" ;
chromosome1 GeneDB CDS 3729984 3730178 . + . mRNA SPAC15E1.08 ; colour "7" ;
chromosome1 GeneDB CDS 3730494 3730596 . + . mRNA SPAC15E1.08 ; colour "7" ;
chromosome1 GeneDB CDS 3730644 3730700 . + . mRNA SPAC15E1.08 ; colour "7" ;
chromosome1 GeneDB CDS 3730904 3730991 . + . mRNA SPAC15E1.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 3729898 3729903 . + . misc_feature unknown_3119 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3729970 3729983 . + . misc_feature unknown_3120 ; colour "6" ; note "ctaatttaatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3730179 3730184 . + . misc_feature unknown_3121 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3730474 3730493 . + . misc_feature unknown_3122 ; colour "6" ; note "ctaactacttaaatgaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3730597 3730602 . + . misc_feature unknown_3123 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3730629 3730643 . + . misc_feature unknown_3124 ; colour "6" ; note "ctaacattattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3730701 3730706 . + . misc_feature unknown_3125 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3730890 3730903 . + . misc_feature unknown_3126 ; colour "6" ; note "ctaacaatttttag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 3731102 3731270 . + . mRNA SPAC15E1.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC15E1.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3731271 3731981 . + . mRNA SPAC15E1.09 ; systematic_id "SPAC15E1.09" ; colour "2" ; gene "grx2 ||| SPAC15E1.09" ; Alias "grx2" ; db_xref "SPD:08/08D09" ; GO "GO:0005739; mitochondrion
GO:0004602; glutathione peroxidase activity
GO:0004364; glutathione transferase activity
GO:0015035; protein disulfide oxidoreductase activity
GO:0045454; cell redox homeostasis
GO:0034599; cellular response to oxidative stress
GO:0019430; removal of superoxide radicals" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR513W and YCL035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=thioredoxin family; date=20081111" ; primary_name "grx2" ; product "glutaredoxin Grx2" ;
chromosome1 GeneDB CDS 3731271 3731424 . + . mRNA SPAC15E1.09 ; colour "2" ;
chromosome1 GeneDB CDS 3731672 3731692 . + . mRNA SPAC15E1.09 ; colour "2" ;
chromosome1 GeneDB CDS 3731740 3731808 . + . mRNA SPAC15E1.09 ; colour "2" ;
chromosome1 GeneDB CDS 3731893 3731981 . + . mRNA SPAC15E1.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 3731425 3731430 . + . misc_feature unknown_3127 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3731657 3731671 . + . misc_feature unknown_3128 ; colour "6" ; note "ttgatgttacactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3731693 3731698 . + . misc_feature unknown_3129 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3731711 3731739 . + . misc_feature unknown_3130 ; colour "6" ; note "ctgattttatcatatgcttacctgagcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3731809 3731814 . + . misc_feature unknown_3131 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3731875 3731892 . + . misc_feature unknown_3132 ; colour "6" ; note "ctaatacattatataaag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 3732443 3733240 . + . mRNA SPAC15E1.10 ; db_xref "SPD:10/10A12" ; systematic_id "SPAC15E1.10" ; synonym "SPAP7G5.01" ; GO "GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0004866; endopeptidase inhibitor activity
GO:0070628; proteasome binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR076C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; product "PI31 proteasome inhibitor (predicted)" ;
chromosome1 GeneDB CDS 3732443 3733240 . + . mRNA SPAC15E1.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 3732630 3732725 . + . misc_feature unknown_3133 ; note "nominal overlap with cosmid SPAC15E1, EM:AL109770 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 3733638 3733736 . - . mRNA SPAP7G5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP7G5.02c" ; systematic_id "SPAP7G5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3733737 3735599 . - . mRNA SPAP7G5.02c ; Alias "gua2" ; systematic_id "SPAP7G5.02c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR217W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human GMPS ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=warning, inferred from genetic map position; cv=warning; date=20100217" ; GO "GO:0003922; GMP synthase (glutamine-hydrolyzing) activity
GO:0006177; GMP biosynthesis" ; gene "SPAP7G5.02c ||| gua2" ; primary_name "gua2" ; product "GMP synthase [glutamine-hydrolyzing] Gua2 (predicted)" ; EC_number "6.3.5.2" ;
chromosome1 GeneDB CDS 3733737 3735276 . - . mRNA SPAP7G5.02c ; colour "7" ;
chromosome1 GeneDB CDS 3735477 3735517 . - . mRNA SPAP7G5.02c ; colour "7" ;
chromosome1 GeneDB CDS 3735561 3735599 . - . mRNA SPAP7G5.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 3735277 3735292 . - . misc_feature unknown_3134 ; colour "6" ; note "ctaaccataattgtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3735277 3735476 . - . intron SPAP7G5.02c ; systematic_id "SPAP7G5.02c" ; gene "SPAP7G5.02c ||| gua2" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3735471 3735476 . - . misc_feature unknown_3135 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3735518 3735535 . - . misc_feature unknown_3136 ; colour "6" ; note "ctgatctgaatatcaaag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3735518 3735560 . - . intron SPAP7G5.02c ; systematic_id "SPAP7G5.02c" ; gene "SPAP7G5.02c ||| gua2" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3735555 3735560 . - . misc_feature unknown_3137 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3735600 3735652 . - . mRNA SPAP7G5.02c ; ID "SPAP7G5.02c" ; systematic_id "SPAP7G5.02c" ; gene "SPAP7G5.02c ||| gua2" ; note "mRNA from AU007735" ;
chromosome1 GeneDB misc_RNA 3735863 3735954 . + . misc_RNA SPNCRNA.524 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.524" ; synonym "SPNG705" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB tRNA 3736520 3736592 . + . tRNA SPATRNAARG.02 ; systematic_id "SPATRNAARG.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033440; ACG codon-amino acid adaptor activity" ; gene "SPATRNAARG.02" ; product "tRNA Arginine" ; note "anticodon ACG, Cove score 75.46" ;
chromosome1 GeneDB CDS_parts 3736955 3739106 . + . mRNA SPAP7G5.03 ; Alias "prm1" ; systematic_id "SPAP7G5.03" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL279W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0032220; plasma membrane fusion during cytogamy
GO:0043332; mating projection tip
GO:0005887; integral to plasma membrane" ; gene "prm1 ||| SPAP7G5.03" ; primary_name "prm1" ; product "conjugation protein Prm1 (predicted)" ;
chromosome1 GeneDB CDS 3736955 3738464 . + . mRNA SPAP7G5.03 ; colour "7" ;
chromosome1 GeneDB CDS 3738505 3739106 . + . mRNA SPAP7G5.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 3738465 3738470 . + . misc_feature unknown_3138 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3738494 3738504 . + . misc_feature unknown_3139 ; colour "6" ; note "ctaaccaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3739076 3739161 . - . mRNA SPAP7G5.04c ; Alias "lys1" ; ID "SPAP7G5.04c" ; systematic_id "SPAP7G5.04c" ; primary_name "lys1" ; gene "lys1 ||| SPAP7G5.04c" ; note "mRNA from AU007731" ;
chromosome1 GeneDB CDS_parts 3739162 3743421 . - . mRNA SPAP7G5.04c ; Alias "lys1" ; systematic_id "SPAP7G5.04c" ; colour "2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR115C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004043; L-aminoadipate-semialdehyde dehydrogenase activity
GO:0009085; lysine biosynthesis
GO:0000062; acyl-CoA binding
GO:0005737; cytoplasm" ; gene "lys1 ||| SPAP7G5.04c" ; primary_name "lys1" ; product "aminoadipate-semialdehyde dehydrogenase" ; EC_number "1.2.1.31" ;
chromosome1 GeneDB CDS 3739162 3743421 . - . mRNA SPAP7G5.04c ; colour "2" ;
chromosome1 GeneDB CDS_parts 3744164 3744829 . + . mRNA SPAP7G5.05 ; systematic_id "SPAP7G5.05" ; colour "2" ; gene "rpl1002 ||| rpl10-2 ||| SPAP7G5.05 ||| rpl10" ; Alias "rpl1002" ; synonym "rpl10-2 ||| rpl10" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR075W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpl1002" ; product "60S ribosomal protein L10" ;
chromosome1 GeneDB CDS 3744164 3744829 . + . mRNA SPAP7G5.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 3744830 3749694 . + . misc_feature unknown_3140 ; note "low complexity gene free region" ;
chromosome1 GeneDB CDS_parts 3749695 3751446 . + . mRNA SPAP7G5.06 ; Alias "per1" ; systematic_id "SPAP7G5.06" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0035524; proline transmembrane transport
GO:0006808; regulation of nitrogen utilization
GO:0015193; L-proline transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=gene expression, alternative transcript, alternative start; db_xref=PMID:20404084; date=20100504 ||| term=gene expression, expression induced by proline; db_xref=PMID:20404084; date=20100504" ; colour "2" ; primary_name "per1" ; product "plasma membrane amino acid permease Per1" ;
chromosome1 GeneDB CDS 3749695 3751446 . + . mRNA SPAP7G5.06 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3751447 3751621 . + . mRNA SPAP7G5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP7G5.06" ; systematic_id "SPAP7G5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 3752334 3752406 . - . tRNA SPATRNAPHE.02 ; systematic_id "SPATRNAPHE.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033459; GAA codon-amino acid adaptor activity" ; gene "SPATRNAPHE.02" ; product "tRNA Phenylalanine" ; note "tRNA Phe anticodon GAA, Cove score 69.56" ;
chromosome1 GeneDB misc_RNA 3753160 3753489 . - . misc_RNA SPNCRNA.84 ; db_xref "EMBL:AU010014" ; systematic_id "SPNCRNA.84" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.84" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB repeat_region 3753687 3754077 . + . repeat_region unknown_3141 ; colour "12" ; note "region between dg and dh repeat" ;
chromosome1 GeneDB misc_RNA 3753730 3754811 . + . misc_RNA SPNCRNA.230 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.230" ; synonym "SPNG707" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB repeat_region 3754127 3759170 . - . repeat_region unknown_3142 ; colour "2" ; note "dhI repeat" ;
chromosome1 GeneDB misc_feature 3755571 3755666 . + . misc_feature unknown_3143 ; note "nominal overlap with plasmid SPAP7G5 and cosmid SPAC1856" ;
chromosome1 GeneDB repeat_region 3759165 3763441 . + . repeat_region unknown_3144 ; colour "3" ; note "dgI repeat" ;
chromosome1 GeneDB misc_RNA 3761023 3762114 . + . misc_RNA SPNCRNA.231 ; db_xref "PMID:18488015" ; synonym "SPNG722" ; systematic_id "SPNCRNA.231" ; controlled_curation "term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_RNA 3762865 3763969 . + . misc_RNA SPNCRNA.232 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.232" ; synonym "SPNG725" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB repeat_region 3763442 3769077 . + . repeat_region unknown_3145 ; colour "1" ; note "imr1L" ;
chromosome1 GeneDB tRNA 3765008 3765081 . - . tRNA SPATRNAALA.04 ; systematic_id "SPATRNAALA.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033440; ACG codon-amino acid adaptor activity" ; gene "SPATRNAALA.04" ; product "tRNA Alanine" ; note "anticodon AGC, Cove score 67.24" ;
chromosome1 GeneDB tRNA 3765434 3765505 . - . tRNA SPATRNAGLU.03 ; systematic_id "SPATRNAGLU.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033418; CTC codon-amino acid adaptor activity" ; gene "SPATRNAGLU.03" ; product "tRNA Glutamic acid" ; note "tRNA Glu anticodon CTC, Cove score 74.15" ;
chromosome1 GeneDB tRNA 3768290 3768363 . + . tRNA SPATRNAILE.03 ; systematic_id "SPATRNAILE.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033441; AAT codon-amino acid adaptor activity" ; gene "SPATRNAILE.03" ; product "tRNA Isoleucine" ; note "tRNA Ile anticodon AAT, Cove score 66.44" ;
chromosome1 GeneDB repeat_region 3769078 3773184 . + . repeat_region unknown_3146 ; colour "4" ; note "cnt1" ;
chromosome1 GeneDB misc_RNA 3769525 3770016 . + . misc_RNA SPNCRNA.233 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.233" ; synonym "SPNG728" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB repeat_region 3773196 3778831 . + . repeat_region unknown_3147 ; colour "1" ; note "imr1R" ;
chromosome1 GeneDB tRNA 3773910 3773983 . - . tRNA SPATRNAILE.04 ; systematic_id "SPATRNAILE.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033441; AAT codon-amino acid adaptor activity" ; gene "SPATRNAILE.04" ; product "tRNA Isoleucine" ; note "tRNA Ile anticodon AAT, Cove score 66.44" ;
chromosome1 GeneDB misc_RNA 3775473 3775847 . + . misc_RNA SPNCRNA.333 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.333" ; synonym "SPNG733" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_RNA 3775854 3776756 . + . misc_RNA SPNCRNA.396 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.396" ; synonym "SPNG734" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB tRNA 3776768 3776839 . + . tRNA SPATRNAGLU.04 ; systematic_id "SPATRNAGLU.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033418; CTC codon-amino acid adaptor activity" ; gene "SPATRNAGLU.04" ; product "tRNA Glutamic acid" ; note "tRNA Glu anticodon CTC, Cove score 74.15" ;
chromosome1 GeneDB repeat_region 3777115 3778839 . + . repeat_region unknown_3148 ; colour "3" ; note "dgI repeat" ;
chromosome1 GeneDB tRNA 3777192 3777265 . + . tRNA SPATRNAALA.05 ; systematic_id "SPATRNAALA.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033440; ACG codon-amino acid adaptor activity" ; product "tRNA Alanine" ; note "tRNA Ala anticodon AGC, Cove score 67.24" ;
chromosome1 GeneDB misc_feature 3778336 3778839 . + . misc_feature unknown_3149 ; note "nominal overlap with SPAC1856 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 3785089 3785235 . + . misc_feature unknown_3150 ; note "nominal overlap with SPAP4C9 S. pombe chromosome 1" ;
chromosome1 GeneDB repeat_region 3785089 3788981 . + . repeat_region unknown_3151 ; colour "2" ; note "dhI repeat, first 897 bp of SPDHI entry missing" ;
chromosome1 GeneDB misc_RNA 3786105 3787136 . + . misc_RNA SPNCRNA.234 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.234" ; synonym "SPNG746" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; db_xref=PMID:18488015; cv=genome_org; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB repeat_region 3789031 3789421 . + . repeat_region unknown_3152 ; colour "12" ; note "region between dg and dh repeat" ;
chromosome1 GeneDB misc_RNA 3789585 3789948 . + . misc_RNA SPNCRNA.95 ; systematic_id "SPNCRNA.95" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.95" ; product "non-coding RNA (predicted)" ; note "from spc00798 133 368; not attached to CDS ||| possibly spurious, expression low on both strands (pers comm. Jurg Bahler)" ;
chromosome1 GeneDB 5'-UTR 3790667 3790979 . + . mRNA SPAP4C9.02 ; ID "SPAP4C9.02" ; db_xref "PMID:18488015" ; systematic_id "SPAP4C9.02" ; gene "SPAP4C9.02" ;
chromosome1 GeneDB CDS_parts 3790980 3791342 . + . mRNA SPAP4C9.02 ; systematic_id "SPAP4C9.02" ; colour "7" ; gene "SPAP4C9.02 ||| emc1" ; Alias "emc5" ; db_xref "PMID:18488015" ; obsolete_name "SPNG750-51 ||| SPNCRNA.235" ; controlled_curation "term=orthologous to S. cerevisiae YIL027C; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Metazoa; date=20091228 ||| term=species distribution, conserved in Vertebrates; date=20091228 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; GO "GO:0034975; protein folding in the endoplasmic reticulum
GO:0072546; ER membrane protein complex" ; primary_name "emc5" ; product "ER membrane protein complex subunit 5 (predicted)" ;
chromosome1 GeneDB CDS 3790980 3791111 . + . mRNA SPAP4C9.02 ; colour "7" ;
chromosome1 GeneDB CDS 3791154 3791342 . + . mRNA SPAP4C9.02 ; colour "7" ;
chromosome1 GeneDB intron 3791112 3791153 . + . intron SPAP4C9.02 ; systematic_id "SPAP4C9.02" ; gene "SPAP4C9.02" ; note "confirmed by Solexa transread data PMID:18488015" ;
chromosome1 GeneDB 3'-UTR 3791343 3791710 . + . mRNA SPAP4C9.02 ; ID "SPAP4C9.02" ; db_xref "PMID:18488015" ; systematic_id "SPAP4C9.02" ; gene "SPAP4C9.02" ;
chromosome1 GeneDB CDS_parts 3791831 3795856 . - . mRNA SPAC1556.01c ; systematic_id "SPAC1556.01c" ; colour "2" ; db_xref "SPD:39/39D10" ; Alias "rad50" ; synonym "SPAP4C9.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YNL250W; date=19700101 ||| term=disease associated, cancer; date=20080110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12944481; date=20100705 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; GO "GO:0030870; Mre11 complex
GO:0000790; nuclear chromatin
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0003677; DNA binding
GO:0000077; DNA damage checkpoint
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0000724; double-strand break repair via homologous recombination
GO:0000734; gene conversion at mating-type locus, DNA repair synthesis
GO:0031573; intra-S DNA damage checkpoint
GO:0042138; meiotic DNA double-strand break formation
GO:0007131; meiotic recombination
GO:0000723; telomere maintenance" ; primary_name "rad50" ; product "DNA repair protein Rad50" ;
chromosome1 GeneDB CDS 3791831 3791851 . - . mRNA SPAC1556.01c ; colour "2" ;
chromosome1 GeneDB CDS 3791891 3792229 . - . mRNA SPAC1556.01c ; colour "2" ;
chromosome1 GeneDB CDS 3792267 3795557 . - . mRNA SPAC1556.01c ; colour "2" ;
chromosome1 GeneDB CDS 3795601 3795684 . - . mRNA SPAC1556.01c ; colour "2" ;
chromosome1 GeneDB CDS 3795734 3795856 . - . mRNA SPAC1556.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 3792230 3792239 . - . misc_feature unknown_3153 ; colour "6" ; note "ctaacaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3792261 3792266 . - . misc_feature unknown_3154 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3793792 3793894 . + . misc_feature unknown_3155 ; note "nominal overlap with cosmid c1556" ;
chromosome1 GeneDB misc_feature 3795558 3795569 . - . misc_feature unknown_3156 ; colour "6" ; note "ctaacctgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3795595 3795600 . - . misc_feature unknown_3157 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3795685 3795696 . - . misc_feature unknown_3158 ; colour "6" ; note "ttaatctaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3795728 3795733 . - . misc_feature unknown_3159 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3796280 3796399 . - . mRNA SPAC1556.02c ; Alias "sdh1" ; ID "SPAC1556.02c" ; db_xref "SPD:37/37C02" ; systematic_id "SPAC1556.02c" ; primary_name "sdh1" ; gene "sdh1 ||| SPAC1556.02c" ; note "mRNA from SPD263" ;
chromosome1 GeneDB CDS_parts 3796400 3798446 . - . mRNA SPAC1556.02c ; systematic_id "SPAC1556.02c" ; colour "7" ; gene "sdh1 ||| SPAC1556.02c" ; Alias "sdh1" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00190; ||| SPD:37/37C02" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006121; mitochondrial electron transport, succinate to ubiquinone
GO:0006105; succinate metabolism
GO:0008177; succinate dehydrogenase (ubiquinone) activity
GO:0005749; respiratory chain complex II (sensu Eukaryota)
GO:0050660; FAD binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Leigh syndrome; date=20060920 ||| term=disease associated, neurological disorders; date=20060920 ||| term=orthologous to S. cerevisiae YKL148C and YJL045W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sdh1" ; product "succinate dehydrogenase Sdh1 (predicted)" ; EC_number "1.3.5.1" ;
chromosome1 GeneDB CDS 3796400 3798226 . - . mRNA SPAC1556.02c ; colour "7" ;
chromosome1 GeneDB CDS 3798348 3798446 . - . mRNA SPAC1556.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 3798227 3798238 . - . misc_feature unknown_3160 ; colour "6" ; note "ctaacaatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3798342 3798347 . - . misc_feature unknown_3161 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3798445 3798478 . - . mRNA SPAC1556.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1556.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3799025 3799243 . + . mRNA SPAC1556.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1556.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3799244 3800241 . + . mRNA SPAC1556.03 ; systematic_id "SPAC1556.03" ; colour "2" ; gene "azr1 ||| SPAC1556.03" ; Alias "azr1" ; db_xref "SPD:40/40B08" ; GO "GO:0004722; protein phosphatase type 2C activity
GO:0006470; protein amino acid dephosphorylation
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, resistance to 5- azacytidine (nucleoside analogue); qualifier=overexpression; cv=phenotype; db_xref=PMID:9153756; date=20040726 ||| term=orthologous to S. cerevisiae YHR076W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; primary_name "azr1" ; product "serine/threonine protein phosphatase Azr1" ;
chromosome1 GeneDB CDS 3799244 3799680 . + . mRNA SPAC1556.03 ; colour "2" ;
chromosome1 GeneDB CDS 3799731 3800135 . + . mRNA SPAC1556.03 ; colour "2" ;
chromosome1 GeneDB CDS 3800184 3800241 . + . mRNA SPAC1556.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 3799681 3799686 . + . misc_feature unknown_3162 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3799715 3799730 . + . misc_feature unknown_3163 ; colour "6" ; note "ctaactttatttcaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3800292 3800312 . - . mRNA SPAC1556.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1556.04c" ; systematic_id "SPAC1556.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3800313 3800938 . - . mRNA SPAC1556.04c ; systematic_id "SPAC1556.04c" ; colour "7" ; gene "pcd1 ||| SPAC1556.04c ||| cdd1" ; private "GO:0055086 to hardwire term for queries" ; note "care not azr1" ; Alias "cdd1" ; db_xref "SPD:31/31F12" ; synonym "pcd1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR245C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004126; cytidine deaminase activity
GO:0006216; cytidine catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus" ; primary_name "cdd1" ; product "cytidine deaminase Ccd1 (predicted)" ; EC_number "3.5.4.5" ;
chromosome1 GeneDB CDS 3800313 3800351 . - . mRNA SPAC1556.04c ; colour "7" ;
chromosome1 GeneDB CDS 3800393 3800471 . - . mRNA SPAC1556.04c ; colour "7" ;
chromosome1 GeneDB CDS 3800535 3800617 . - . mRNA SPAC1556.04c ; colour "7" ;
chromosome1 GeneDB CDS 3800686 3800747 . - . mRNA SPAC1556.04c ; colour "7" ;
chromosome1 GeneDB CDS 3800800 3800938 . - . mRNA SPAC1556.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 3800352 3800367 . - . misc_feature unknown_3164 ; colour "6" ; note "ttaacatgattggcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3800387 3800392 . - . misc_feature unknown_3165 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3800472 3800490 . - . misc_feature unknown_3166 ; colour "6" ; note "ctaacaaaacgttgttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3800529 3800534 . - . misc_feature unknown_3167 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3800618 3800636 . - . misc_feature unknown_3168 ; colour "6" ; note "ctcacatcaaccttaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3800680 3800685 . - . misc_feature unknown_3169 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3800748 3800763 . - . misc_feature unknown_3170 ; colour "6" ; note "ctaacgtatcaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3800794 3800799 . - . misc_feature unknown_3171 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3800937 3801068 . - . mRNA SPAC1556.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1556.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3801229 3801247 . - . mRNA SPAC1556.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1556.05c" ; systematic_id "SPAC1556.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3801248 3801717 . - . mRNA SPAC1556.05c ; systematic_id "SPAC1556.05c" ; colour "7" ; gene "SPAC1556.05c ||| cgr1" ; Alias "cgr1" ; db_xref "SPD:04/04C10" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL029W; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, non-consensus branch site; date=20100731" ; primary_name "cgr1" ; product "ribosome biogenesis CGR1 family (predicted)" ;
chromosome1 GeneDB CDS 3801248 3801391 . - . mRNA SPAC1556.05c ; colour "7" ;
chromosome1 GeneDB CDS 3801442 3801589 . - . mRNA SPAC1556.05c ; colour "7" ;
chromosome1 GeneDB CDS 3801634 3801643 . - . mRNA SPAC1556.05c ; colour "7" ;
chromosome1 GeneDB CDS 3801684 3801717 . - . mRNA SPAC1556.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 3801392 3801406 . - . misc_feature unknown_3172 ; colour "6" ; note "ctaattattcataag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3801436 3801441 . - . misc_feature unknown_3173 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3801628 3801633 . - . misc_feature unknown_3174 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3801644 3801655 . - . misc_feature unknown_3175 ; colour "6" ; note "ctaattctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3801678 3801683 . - . misc_feature unknown_3176 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 3802551 3804954 . + . mRNA SPAC1556.06.1 ; Alias "meu1" ; systematic_id "SPAC1556.06.1" ; other_transcript "SPAC1556.06.2" ; synonym "SPAC1556.06a ||| SPAC1556.06" ; colour "8" ; controlled_curation "term=protein sequence feature, NLS; qualifier=predicted; db_xref=PMID:11376151; cv=sequence_feature; date=20060605 ||| term=protein sequence feature, coiled-coil; qualifier=region; cv=sequence_feature; date=20060605 ||| term=gene expression, alternative transcripts; db_xref=PMID:11376151; cv=gene_ex; date=20060605 ||| term=species distribution, sequence orphan; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu1" ; product "sequence orphan" ; shared_id "SPAC1556.06" ;
chromosome1 GeneDB CDS 3802551 3804587 . + . mRNA SPAC1556.06.1 ; colour "8" ;
chromosome1 GeneDB CDS 3804661 3804954 . + . mRNA SPAC1556.06.1 ; colour "8" ;
chromosome1 GeneDB CDS_parts 3804582 3804954 . + . mRNA SPAC1556.06.2 ; Alias "meu2" ; systematic_id "SPAC1556.06.2" ; other_transcript "SPAC1556.06.1" ; synonym "SPAC1556.06b ||| SPAC1556.06" ; colour "8" ; controlled_curation "term=protein sequence feature, NLS; qualifier=predicted; db_xref=PMID:11376151; cv=sequence_feature; date=20060605 ||| term=gene expression, alternative transcripts; cv=gene_ex; db_xref=PMID:11376151; date=20060605 ||| term=species distribution, sequence orphan; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu2" ; product "sequence orphan" ; shared_id "SPAC1556.06" ;
chromosome1 GeneDB CDS 3804582 3804587 . + . mRNA SPAC1556.06.2 ; colour "8" ;
chromosome1 GeneDB CDS 3804661 3804954 . + . mRNA SPAC1556.06.2 ; colour "8" ;
chromosome1 GeneDB misc_feature 3804588 3804593 . + . misc_feature unknown_3177 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3804588 3804660 . + . misc_feature unknown_3178 ; note "intron confirmed by mRNA ||| changed to misc_feature as not sure how to assign systemtic id for GeneDB compliance" ;
chromosome1 GeneDB misc_feature 3804641 3804660 . + . misc_feature unknown_3179 ; colour "6" ; note "ttaaccaaaacacaaaccag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3804955 3805271 . + . mRNA SPAC1556.06.1 ; ID "SPAC1556.06" ; db_xref "SPD:28/28F04 ||| EMBL:AB017033" ; systematic_id "SPAC1556.06.1" ;
chromosome1 GeneDB 5'-UTR 3805798 3805843 . + . mRNA SPAC1556.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1556.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3805844 3806849 . + . mRNA SPAC1556.07 ; systematic_id "SPAC1556.07" ; colour "2" ; gene "pmm1 ||| SPAC1556.07" ; Alias "pmm1" ; db_xref "SPD:32/32C09" ; GO "GO:0006886; intracellular protein transport
GO:0004615; phosphomannomutase activity
GO:0045047; protein targeting to ER
GO:0005829; cytosol
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006998; nuclear membrane organization and biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL045C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pmm1" ; product "phosphomannomutase Pmm1" ; EC_number "5.4.2.8" ;
chromosome1 GeneDB CDS 3805844 3805930 . + . mRNA SPAC1556.07 ; colour "2" ;
chromosome1 GeneDB CDS 3806163 3806849 . + . mRNA SPAC1556.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 3805931 3805936 . + . misc_feature unknown_3180 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 3805931 3806162 . + . intron SPAC1556.07 ; Alias "pmm1" ; db_xref "SPD:32/32C09" ; systematic_id "SPAC1556.07" ; primary_name "pmm1" ; gene "pmm1 ||| SPAC1556.07" ; note "intron confirmed from EST" ;
chromosome1 GeneDB misc_feature 3806149 3806162 . + . misc_feature unknown_3181 ; colour "6" ; note "ctaacattttaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3806850 3806987 . + . mRNA SPAC1556.07 ; Alias "pmm1" ; ID "SPAC1556.07" ; db_xref "SPD:32/32C09" ; systematic_id "SPAC1556.07" ; primary_name "pmm1" ; gene "pmm1 ||| SPAC1556.07" ; note "mRNA from SPAB703" ;
chromosome1 GeneDB 3'-UTR 3807221 3807446 . - . mRNA SPAC1556.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1556.08c" ; systematic_id "SPAC1556.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3807447 3808670 . - . mRNA SPAC1556.08c ; systematic_id "SPAC1556.08c" ; colour "2" ; gene "SPAC1556.08c ||| SPAC1F12.01c ||| cbs2" ; Alias "cbs2" ; db_xref "SPD:19/19D12" ; synonym "SPAC1F12.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL115W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0030295; protein kinase activator activity
GO:0006109; regulation of carbohydrate metabolism
GO:0045990; regulation of transcription by carbon catabolites
GO:0007165; signal transduction
GO:0032569; specific transcription from RNA polymerase II promoter" ; primary_name "cbs2" ; product "protein kinase activator (predicted)" ;
chromosome1 GeneDB CDS 3807447 3807775 . - . mRNA SPAC1556.08c ; colour "2" ;
chromosome1 GeneDB CDS 3807831 3807987 . - . mRNA SPAC1556.08c ; colour "2" ;
chromosome1 GeneDB CDS 3808035 3808393 . - . mRNA SPAC1556.08c ; colour "2" ;
chromosome1 GeneDB CDS 3808448 3808571 . - . mRNA SPAC1556.08c ; colour "2" ;
chromosome1 GeneDB CDS 3808635 3808670 . - . mRNA SPAC1556.08c ; colour "2" ;
chromosome1 GeneDB misc_feature 3807629 3807727 . + . misc_feature unknown_3182 ; note "nominal overlap with cosmid SPAC1556 and cosmid SPAC1F12" ;
chromosome1 GeneDB misc_feature 3807776 3807787 . - . misc_feature unknown_3183 ; colour "2" ; note "splice branch and acceptor sequence, ttaacctgagcag" ;
chromosome1 GeneDB misc_feature 3807825 3807830 . - . misc_feature unknown_3184 ; colour "2" ; note "splice donor sequence, gtttgt" ;
chromosome1 GeneDB misc_feature 3807988 3808003 . - . misc_feature unknown_3185 ; colour "2" ; note "splice branch and acceptor sequence, ctaatttcaaattta g" ;
chromosome1 GeneDB misc_feature 3808029 3808034 . - . misc_feature unknown_3186 ; colour "2" ; note "splice donor sequence, gttcgt" ;
chromosome1 GeneDB misc_feature 3808394 3808408 . - . misc_feature unknown_3187 ; colour "2" ; note "splice branch and acceptor sequence, ttaatcacgtcttag" ;
chromosome1 GeneDB misc_feature 3808442 3808447 . - . misc_feature unknown_3188 ; colour "2" ; note "splice donor sequence, gtacga" ;
chromosome1 GeneDB misc_feature 3808572 3808591 . - . misc_feature unknown_3189 ; colour "2" ; note "splice branch and acceptor sequence, ttaatctatgtgatg tacag" ;
chromosome1 GeneDB misc_feature 3808629 3808634 . - . misc_feature unknown_3190 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 3808669 3808706 . - . mRNA SPAC1556.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1556.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3809345 3809527 . - . mRNA SPAC1F12.02c ; ID "SPAC1F12.02c" ; db_xref "SPD:05/05A02" ; systematic_id "SPAC1F12.02c" ; note "mRNA from AU009960" ;
chromosome1 GeneDB CDS_parts 3809528 3810034 . - . mRNA SPAC1F12.02c ; db_xref "SPD:05/05A02" ; systematic_id "SPAC1F12.02c" ; synonym "p23fy" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL056C; date=19700101 ||| term=human TCTP ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006412; translation" ; product "translationally controlled tumor protein homolog (predicted)" ;
chromosome1 GeneDB CDS 3809528 3810034 . - . mRNA SPAC1F12.02c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3810249 3810366 . - . mRNA SPAC1F12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F12.03c" ; systematic_id "SPAC1F12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3810367 3810660 . - . mRNA SPAC1F12.03c ; db_xref "SPD:01/01D07" ; systematic_id "SPAC1F12.03c" ; colour "10" ; gene "SPAC1F12.03c" ; product "cytochrome C oxidase transmembrane region" ;
chromosome1 GeneDB CDS 3810367 3810458 . - . mRNA SPAC1F12.03c ; colour "10" ;
chromosome1 GeneDB CDS 3810639 3810660 . - . mRNA SPAC1F12.03c ; colour "10" ;
chromosome1 GeneDB misc_feature 3810459 3810475 . - . misc_feature unknown_3191 ; colour "2" ; note "splice branch and acceptor sequence, ttgattaaagaacat ag" ;
chromosome1 GeneDB misc_feature 3810633 3810638 . - . misc_feature unknown_3192 ; colour "2" ; note "splice donor sequence, gtatat" ;
chromosome1 GeneDB CDS_parts 3811066 3811641 . - . mRNA SPAC1F12.04c ; db_xref "SPD:06/06B08" ; systematic_id "SPAC1F12.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC1F12.04c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 3811066 3811641 . - . mRNA SPAC1F12.04c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 3811640 3811895 . - . mRNA SPAC1F12.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F12.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3812558 3813121 . + . mRNA SPAC1F12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3813122 3814255 . + . mRNA SPAC1F12.05 ; db_xref "SPD:17/17G12" ; systematic_id "SPAC1F12.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0031625; ubiquitin protein ligase binding
GO:0070086; ubiquitin-dependent endocytosis
GO:0030136; clathrin-coated vesicle" ; gene "SPAC1F12.05" ; product "endocytosis regulator (predicted)" ;
chromosome1 GeneDB CDS 3813122 3814255 . + . mRNA SPAC1F12.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3814256 3814431 . + . mRNA SPAC1F12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F12.05" ; systematic_id "SPAC1F12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3814549 3815393 . - . mRNA SPAC1F12.06c ; db_xref "SPD:22/22A11" ; systematic_id "SPAC1F12.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004519; endonuclease activity
GO:0006281; DNA repair" ; colour "7" ; gene "SPAC1F12.06c" ; product "DNA repair endonuclease (predicted)" ;
chromosome1 GeneDB CDS 3814549 3814940 . - . mRNA SPAC1F12.06c ; colour "7" ;
chromosome1 GeneDB CDS 3815027 3815393 . - . mRNA SPAC1F12.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 3814941 3814954 . - . misc_feature unknown_3193 ; colour "2" ; note "splice branch and acceptor sequence, ctaactcaacttag" ;
chromosome1 GeneDB misc_feature 3815021 3815026 . - . misc_feature unknown_3194 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 3815698 3815852 . + . mRNA SPAC1F12.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F12.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3815853 3817022 . + . mRNA SPAC1F12.07 ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00750; ||| SPD:18/18E05" ; systematic_id "SPAC1F12.07" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR184W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004648; phosphoserine transaminase activity
GO:0005737; cytoplasm
GO:0006564; L-serine biosynthetic process" ; gene "SPAC1F12.07" ; product "phosphoserine aminotransferase (predicted)" ; EC_number "2.6.1.52" ;
chromosome1 GeneDB CDS 3815853 3817022 . + . mRNA SPAC1F12.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3817023 3817069 . + . mRNA SPAC1F12.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F12.07" ; systematic_id "SPAC1F12.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3817464 3818543 . + . mRNA SPAC1F12.08 ; systematic_id "SPAC1F12.08" ; colour "7" ; gene "SPAC1F12.08" ; note "splice prediction is tentative" ; db_xref "SPD:16/16G06" ; GO "GO:0015937; coenzyme A biosynthesis
GO:0004595; pantetheine-phosphate adenylyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR277C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; product "cytidylyltransferase (predicted)" ; EC_number "2.7.7.-" ;
chromosome1 GeneDB CDS 3817464 3817803 . + . mRNA SPAC1F12.08 ; colour "7" ;
chromosome1 GeneDB CDS 3817851 3817991 . + . mRNA SPAC1F12.08 ; colour "7" ;
chromosome1 GeneDB CDS 3818035 3818130 . + . mRNA SPAC1F12.08 ; colour "7" ;
chromosome1 GeneDB CDS 3818170 3818543 . + . mRNA SPAC1F12.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 3817804 3817809 . + . misc_feature unknown_3195 ; colour "2" ; note "splice donor sequence, gtaaat" ;
chromosome1 GeneDB misc_feature 3817830 3817850 . + . misc_feature unknown_3196 ; colour "2" ; note "splice branch and acceptor sequence, ttaataactattttt ttgaag" ;
chromosome1 GeneDB misc_feature 3817992 3817997 . + . misc_feature unknown_3197 ; colour "2" ; note "splice donor sequence, gtacgg" ;
chromosome1 GeneDB misc_feature 3818018 3818034 . + . misc_feature unknown_3198 ; colour "2" ; note "splice branch and acceptor sequence, ctaattatttaatgt ag" ;
chromosome1 GeneDB CDS_parts 3818668 3820420 . + . mRNA SPAC1F12.09 ; systematic_id "SPAC1F12.09" ; colour "7" ; gene "gpi17 ||| SPAC1F12.09" ; Alias "gpi17" ; db_xref "SPD:36/36A11" ; GO "GO:0016255; attachment of GPI anchor to protein
GO:0042765; GPI-anchor transamidase complex
GO:0003923; GPI-anchor transamidase activity" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR434W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gpi17" ; product "pig-S (predicted)" ;
chromosome1 GeneDB CDS 3818668 3818907 . + . mRNA SPAC1F12.09 ; colour "7" ;
chromosome1 GeneDB CDS 3818954 3819677 . + . mRNA SPAC1F12.09 ; colour "7" ;
chromosome1 GeneDB CDS 3819720 3820420 . + . mRNA SPAC1F12.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 3818908 3818913 . + . misc_feature unknown_3199 ; colour "2" ; note "splice donor sequence, gtgcgt" ;
chromosome1 GeneDB misc_feature 3818939 3818953 . + . misc_feature unknown_3200 ; colour "2" ; note "splice branch and acceptor sequence, ctgacatagaagtag" ;
chromosome1 GeneDB misc_feature 3819678 3819683 . + . misc_feature unknown_3201 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 3819706 3819719 . + . misc_feature unknown_3202 ; colour "2" ; note "splice branch and acceptor sequence, ctaaccctaataag" ;
chromosome1 GeneDB 3'-UTR 3820421 3820526 . + . mRNA SPAC1F12.09 ; Alias "gpi17" ; ID "SPAC1F12.09" ; db_xref "SPD:36/36A11" ; systematic_id "SPAC1F12.09" ; primary_name "gpi17" ; gene "gpi17 ||| SPAC1F12.09" ; note "mRNA from AU013287" ;
chromosome1 GeneDB 3'-UTR 3820643 3820726 . - . mRNA SPAC1F12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F12.10c" ; systematic_id "SPAC1F12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3820727 3821385 . - . mRNA SPAC1F12.10c ; db_xref "SPD:07/07F02" ; systematic_id "SPAC1F12.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR073C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0020037; heme binding
GO:0042168; heme metabolism
GO:0003958; NADPH-hemoprotein reductase activity" ; gene "SPAC1F12.10c" ; product "NADPH-hemoprotein reductase (predicted)" ;
chromosome1 GeneDB CDS 3820727 3820794 . - . mRNA SPAC1F12.10c ; colour "7" ;
chromosome1 GeneDB CDS 3820856 3821033 . - . mRNA SPAC1F12.10c ; colour "7" ;
chromosome1 GeneDB CDS 3821188 3821385 . - . mRNA SPAC1F12.10c ; colour "7" ;
chromosome1 GeneDB misc_feature 3820795 3820811 . - . misc_feature unknown_3203 ; colour "2" ; note "splice branch and acceptor sequence, ctaacaattgaattt ag" ;
chromosome1 GeneDB misc_feature 3820850 3820855 . - . misc_feature unknown_3204 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 3821034 3821053 . - . misc_feature unknown_3205 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgaactgttga ag" ;
chromosome1 GeneDB misc_feature 3821182 3821187 . - . misc_feature unknown_3206 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 3821384 3821466 . - . mRNA SPAC1F12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3821928 3822027 . - . misc_feature unknown_3207 ; note "nominal overlap with cosmid SPAC4H3, EMBL:Z69380 S.pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 3821928 3822027 . + . misc_feature unknown_3208 ; note "nominal overlap with cosmid SPAC1F12, EM:Z69944 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 3822569 3822934 . + . mRNA SPAC4H3.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4H3.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3822935 3824280 . + . mRNA SPAC4H3.01 ; db_xref "SPD:20/20G10" ; systematic_id "SPAC4H3.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER048C and YIR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding" ; gene "SPAC4H3.01" ; product "DNAJ domain protein Caj1/Djp1 type (predicted)" ;
chromosome1 GeneDB CDS 3822935 3823020 . + . mRNA SPAC4H3.01 ; colour "7" ;
chromosome1 GeneDB CDS 3823059 3823131 . + . mRNA SPAC4H3.01 ; colour "7" ;
chromosome1 GeneDB CDS 3823216 3823886 . + . mRNA SPAC4H3.01 ; colour "7" ;
chromosome1 GeneDB CDS 3823932 3824280 . + . mRNA SPAC4H3.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 3823021 3823026 . + . misc_feature unknown_3209 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3823021 3823058 . + . intron SPAC4H3.01 ; db_xref "SPD:20/20G10" ; systematic_id "SPAC4H3.01" ; gene "SPAC4H3.01" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3823047 3823058 . + . misc_feature unknown_3210 ; colour "6" ; note "ctaattatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3823132 3823137 . + . misc_feature unknown_3211 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB intron 3823132 3823215 . + . intron SPAC4H3.01 ; db_xref "SPD:20/20G10" ; systematic_id "SPAC4H3.01" ; gene "SPAC4H3.01" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3823202 3823215 . + . misc_feature unknown_3212 ; colour "6" ; note "ttaatgcctgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3823887 3823892 . + . misc_feature unknown_3213 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3823919 3823931 . + . misc_feature unknown_3214 ; colour "6" ; note "ttaacacgcatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3824281 3824385 . + . mRNA SPAC4H3.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4H3.01" ; systematic_id "SPAC4H3.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3824487 3825719 . - . mRNA SPAC4H3.02c ; systematic_id "SPAC4H3.02c" ; colour "2" ; gene "SPAC4H3.02c ||| swc3" ; db_xref "SPD:19/19F06" ; Alias "swc3" ; GO "GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL011W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "swc3" ; product "Swr1 complex subunit Swc3" ;
chromosome1 GeneDB CDS 3824487 3825495 . - . mRNA SPAC4H3.02c ; colour "2" ;
chromosome1 GeneDB CDS 3825553 3825719 . - . mRNA SPAC4H3.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 3825496 3825510 . - . misc_feature unknown_3215 ; colour "6" ; note "ctaatcaatttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3825547 3825552 . - . misc_feature unknown_3216 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3825718 3825927 . - . mRNA SPAC4H3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4H3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3826640 3828589 . - . mRNA SPAC4H3.03c ; db_xref "SPD:26/26H11" ; systematic_id "SPAC4H3.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081203 ||| term=species distribution, conserved in Bacteria; date=20081203" ; GO "GO:0044264; cellular polysaccharide metabolic process" ; colour "7" ; gene "SPAC4H3.03c" ; product "glucan 1,4-alpha-glucosidase (predicted)" ;
chromosome1 GeneDB CDS 3826640 3828589 . - . mRNA SPAC4H3.03c ; colour "7" ;
chromosome1 GeneDB rRNA 3830380 3830498 . + . rRNA SPRRNA.17 ; systematic_id "SPRRNA.17" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.17" ; product "5S rRNA" ;
chromosome1 GeneDB 3'-UTR 3830540 3831069 . - . mRNA SPAC4H3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4H3.04c" ; systematic_id "SPAC4H3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3831070 3832149 . - . mRNA SPAC4H3.04c ; systematic_id "SPAC4H3.04c" ; colour "10" ; gene "SPAC4H3.04c" ; note "in some organisms this domain is present with ammecr1 which interacts with mediator complex and is implicated in transcription" ; db_xref "SPD:16/16G07" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=human MEMO1 ortholog; date=20100718" ; product "UPF0103 family" ;
chromosome1 GeneDB CDS 3831070 3831683 . - . mRNA SPAC4H3.04c ; colour "10" ;
chromosome1 GeneDB CDS 3831775 3831956 . - . mRNA SPAC4H3.04c ; colour "10" ;
chromosome1 GeneDB CDS 3832016 3832149 . - . mRNA SPAC4H3.04c ; colour "10" ;
chromosome1 GeneDB misc_feature 3831684 3831703 . - . misc_feature unknown_3217 ; colour "6" ; note "ctaactggaaatttatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3831769 3831774 . - . misc_feature unknown_3218 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3831957 3831971 . - . misc_feature unknown_3219 ; colour "6" ; note "ctaaatattgagcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3832010 3832015 . - . misc_feature unknown_3220 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3832148 3836101 . - . mRNA SPAC4H3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4H3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3832309 3832774 . + . mRNA SPAC4H3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4H3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3832775 3835593 . + . mRNA SPAC4H3.05 ; systematic_id "SPAC4H3.05" ; colour "2" ; gene "srs2 ||| SPAC4H3.05" ; Alias "srs2" ; db_xref "SPD:47/47C06" ; GO "GO:0004003; ATP-dependent DNA helicase activity
GO:0031297; collapsed replication fork processing
GO:0006301; postreplication repair
GO:0000725; recombinational repair
GO:0000725; recombinational repair
GO:0034644; cellular response to UV" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL092W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618" ; primary_name "srs2" ; product "ATP-dependent DNA helicase, UvrD subfamily" ; EC_number "3.6.1.-" ;
chromosome1 GeneDB CDS 3832775 3833136 . + . mRNA SPAC4H3.05 ; colour "2" ;
chromosome1 GeneDB CDS 3833202 3833466 . + . mRNA SPAC4H3.05 ; colour "2" ;
chromosome1 GeneDB CDS 3833512 3833942 . + . mRNA SPAC4H3.05 ; colour "2" ;
chromosome1 GeneDB CDS 3833988 3835593 . + . mRNA SPAC4H3.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 3833137 3833142 . + . misc_feature unknown_3221 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3833189 3833201 . + . misc_feature unknown_3222 ; colour "6" ; note "ctgatctatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3833467 3833472 . + . misc_feature unknown_3223 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3833500 3833511 . + . misc_feature unknown_3224 ; colour "6" ; note "ctaactatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3833943 3833948 . + . misc_feature unknown_3225 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3833973 3833987 . + . misc_feature unknown_3226 ; colour "6" ; note "ctaacgattctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_RNA 3835571 3836109 . - . misc_RNA SPNCRNA.588 ; obsolete_name "SPNCRNA.500" ; systematic_id "SPNCRNA.588" ; gene "SPNCRNA.588" ; note "from CRUK ccg.O.1484; cant find a CDS in here, all reading frames have stop codons. Overlaps at the 3' with the 3' of srs2; some sort of possible antisense transcript?" ;
chromosome1 GeneDB CDS_parts 3837449 3838000 . + . mRNA SPAC4H3.06 ; db_xref "SPD:42/42C10" ; systematic_id "SPAC4H3.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC4H3.06" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3837449 3837519 . + . mRNA SPAC4H3.06 ; colour "8" ;
chromosome1 GeneDB CDS 3837568 3837751 . + . mRNA SPAC4H3.06 ; colour "8" ;
chromosome1 GeneDB CDS 3837811 3837890 . + . mRNA SPAC4H3.06 ; colour "8" ;
chromosome1 GeneDB CDS 3837940 3838000 . + . mRNA SPAC4H3.06 ; colour "8" ;
chromosome1 GeneDB misc_feature 3837520 3837525 . + . misc_feature unknown_3227 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3837555 3837567 . + . misc_feature unknown_3228 ; colour "6" ; note "ctaacaaaggtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3837752 3837757 . + . misc_feature unknown_3229 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3837788 3837810 . + . misc_feature unknown_3230 ; colour "6" ; note "cttacaatgtataatatttgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3837891 3837896 . + . misc_feature unknown_3231 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3837922 3837939 . + . misc_feature unknown_3232 ; colour "6" ; note "ctaacaaataattattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3838660 3838712 . - . mRNA SPAC4H3.07c ; ID "SPAC4H3.07c" ; db_xref "SPD:42/42G12" ; systematic_id "SPAC4H3.07c" ; gene "SPAC4H3.07c" ; note "mRNA from AU013401" ;
chromosome1 GeneDB CDS_parts 3838713 3839380 . - . mRNA SPAC4H3.07c ; db_xref "SPD:42/42G12" ; systematic_id "SPAC4H3.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR286W and YOR285W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC4H3.07c" ; product "protein phosphatase Fmp31 (predicted)" ;
chromosome1 GeneDB CDS 3838713 3838770 . - . mRNA SPAC4H3.07c ; colour "10" ;
chromosome1 GeneDB CDS 3838837 3839056 . - . mRNA SPAC4H3.07c ; colour "10" ;
chromosome1 GeneDB CDS 3839106 3839157 . - . mRNA SPAC4H3.07c ; colour "10" ;
chromosome1 GeneDB CDS 3839195 3839380 . - . mRNA SPAC4H3.07c ; colour "10" ;
chromosome1 GeneDB misc_feature 3838771 3838782 . - . misc_feature unknown_3233 ; colour "6" ; note "ctaaccttttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3838771 3838836 . - . intron SPAC4H3.07c ; db_xref "SPD:42/42G12" ; systematic_id "SPAC4H3.07c" ; gene "SPAC4H3.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3838831 3838836 . - . misc_feature unknown_3234 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3839057 3839068 . - . misc_feature unknown_3235 ; colour "6" ; note "ctaacatgtcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3839057 3839105 . - . intron SPAC4H3.07c ; db_xref "SPD:42/42G12" ; systematic_id "SPAC4H3.07c" ; gene "SPAC4H3.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3839100 3839105 . - . misc_feature unknown_3236 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3839158 3839171 . - . misc_feature unknown_3237 ; colour "6" ; note "ctaacttgaaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3839158 3839281 . - . intron SPAC4H3.07c ; db_xref "SPD:42/42G12" ; systematic_id "SPAC4H3.07c" ; gene "SPAC4H3.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3839189 3839194 . - . misc_feature unknown_3238 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3839381 3839443 . - . mRNA SPAC4H3.07c ; ID "SPAC4H3.07c" ; systematic_id "SPAC4H3.07c" ; gene "SPAC4H3.07c" ; note "mRNA from AU013400" ;
chromosome1 GeneDB 5'-UTR 3841540 3841580 . + . mRNA SPAC4H3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4H3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3841581 3842441 . + . mRNA SPAC4H3.08 ; db_xref "SPD:11/11E05" ; systematic_id "SPAC4H3.08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0006631; fatty acid metabolism
GO:0003857; 3-hydroxyacyl-CoA dehydrogenase activity
GO:0004300; enoyl-CoA hydratase activity
GO:0006635; fatty acid beta-oxidation
GO:0005782; peroxisomal matrix" ; gene "SPAC4H3.08" ; product "3-hydroxyacyl-CoA dehydrogenase (predicted)" ;
chromosome1 GeneDB CDS 3841581 3842441 . + . mRNA SPAC4H3.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3842442 3842647 . + . mRNA SPAC4H3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4H3.08" ; systematic_id "SPAC4H3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3843366 3843415 . + . mRNA SPAC4H3.09 ; ID "SPAC4H3.09" ; systematic_id "SPAC4H3.09" ; gene "SPAC4H3.09" ; note "mRNA from AU014451" ;
chromosome1 GeneDB CDS_parts 3843416 3844022 . + . mRNA SPAC4H3.09 ; db_xref "SPD:06/06G08" ; systematic_id "SPAC4H3.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL192C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0006633; fatty acid biosynthesis
GO:0005759; mitochondrial matrix
GO:0048037; cofactor binding" ; gene "SPAC4H3.09" ; product "mitochondrial type II fatty acid synthase component (predicted)" ;
chromosome1 GeneDB CDS 3843416 3843577 . + . mRNA SPAC4H3.09 ; colour "7" ;
chromosome1 GeneDB CDS 3843766 3843934 . + . mRNA SPAC4H3.09 ; colour "7" ;
chromosome1 GeneDB CDS 3844015 3844022 . + . mRNA SPAC4H3.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 3843578 3843583 . + . misc_feature unknown_3239 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3843578 3843765 . + . intron SPAC4H3.09 ; db_xref "SPD:06/06G08" ; systematic_id "SPAC4H3.09" ; gene "SPAC4H3.09" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3843754 3843765 . + . misc_feature unknown_3240 ; colour "6" ; note "ctaaccattcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3843935 3843940 . + . misc_feature unknown_3241 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB intron 3843935 3844014 . + . intron SPAC4H3.09 ; db_xref "SPD:06/06G08" ; systematic_id "SPAC4H3.09" ; gene "SPAC4H3.09" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3844001 3844014 . + . misc_feature unknown_3242 ; colour "6" ; note "ctaactttatacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3844023 3844124 . + . mRNA SPAC4H3.09 ; ID "SPAC4H3.09" ; db_xref "SPD:06/06G08" ; systematic_id "SPAC4H3.09" ; gene "SPAC4H3.09" ; note "mRNA from AU014451" ;
chromosome1 GeneDB 3'-UTR 3844743 3845012 . - . mRNA SPAC4H3.10c ; Alias "pyk1" ; ID "SPAC4H3.10c" ; db_xref "SPD:24/24H01" ; systematic_id "SPAC4H3.10c" ; primary_name "pyk1" ; gene "pyk1 ||| SPAC4H3.10c" ; note "mRNA from AU012784" ;
chromosome1 GeneDB CDS_parts 3845013 3846542 . - . mRNA SPAC4H3.10c ; systematic_id "SPAC4H3.10c" ; colour "7" ; gene "pyk1 ||| SPAC4H3.10c" ; Alias "pyk1" ; db_xref "SPD:24/24H01" ; GO "GO:0004743; pyruvate kinase activity
GO:0006090; pyruvate metabolism
GO:0006096; glycolysis
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL038W and YOR347C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pyk1" ; product "pyruvate kinase (predicted)" ; EC_number "2.7.1.40" ;
chromosome1 GeneDB CDS 3845013 3846542 . - . mRNA SPAC4H3.10c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3846543 3846645 . - . mRNA SPAC4H3.10c ; Alias "pyk1" ; ID "SPAC4H3.10c" ; systematic_id "SPAC4H3.10c" ; primary_name "pyk1" ; gene "pyk1 ||| SPAC4H3.10c" ; note "mRNA from AU014480" ;
chromosome1 GeneDB misc_RNA 3846893 3847670 . + . misc_RNA SPNCRNA.236 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.236" ; synonym "SPNG760" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 3848093 3848132 . - . mRNA SPAC4H3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4H3.11c" ; systematic_id "SPAC4H3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3848133 3850484 . - . mRNA SPAC4H3.11c ; systematic_id "SPAC4H3.11c" ; colour "2" ; gene "ppc89 ||| SPAC4H3.11c ||| mug127" ; Alias "ppc89" ; db_xref "SPD:28/28D12" ; synonym "mug127" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; evidence=ISS; db_xref=PMID:16775007; date=20070122 ||| term=name description, Pombe Pole Component; cv=name_description; db_xref=PMID:16775007; date=20070122 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16775007; date=20070122 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20100919 ||| term=species distribution, conserved in Fungi; date=20100919 ||| term=species distribution, conserved in Fungi only; date=20100919 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100919" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005198; structural molecule activity
GO:0000070; mitotic sister chromatid segregation
GO:0007052; mitotic spindle organization and biogenesis
GO:0034613; cellular protein localization
GO:0031028; septation initiation signaling" ; primary_name "ppc89" ; product "spindle pole body protein Ppc89" ;
chromosome1 GeneDB CDS 3848133 3850484 . - . mRNA SPAC4H3.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3850483 3851006 . - . mRNA SPAC4H3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4H3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 3851006 3851107 . + . misc_RNA SPNCRNA.510 ; systematic_id "SPNCRNA.510" ; controlled_curation "term=warning, new gene; db_xref=PMID:18641648; date=20100426" ; product "non-coding RNA (predicted)" ; note "transfrag Q" ;
chromosome1 GeneDB snoRNA 3851768 3851841 . - . snoRNA SPSNORNA.30 ; Alias "snr62" ; systematic_id "SPSNORNA.30" ; controlled_curation "term=orthologous to S. cerevisiae snR62; date=20070104" ; primary_name "snr62" ; gene "snr62 ||| SPSNORNA.30" ; product "small nucleolar RNA R62 (predicted)" ;
chromosome1 GeneDB CDS_parts 3851914 3852219 . - . mRNA SPAC4H3.12c ; db_xref "SPD:01/01E07" ; systematic_id "SPAC4H3.12c" ; colour "6" ; gene "SPAC4H3.12c" ; product "dubious" ;
chromosome1 GeneDB CDS 3851914 3852219 . - . mRNA SPAC4H3.12c ; colour "6" ;
chromosome1 GeneDB misc_feature 3852491 3852661 . + . misc_feature unknown_3243 ; note "EMBL:SPSENSH L09645 S. pombe endonuclease hypersensitive site related DNA sequence" ;
chromosome1 GeneDB 5'-UTR 3852931 3853080 . + . mRNA SPAC4H3.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4H3.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3853081 3853424 . + . mRNA SPAC4H3.13 ; db_xref "SPD:02/02B02" ; systematic_id "SPAC4H3.13" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR095W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000408; EKC/KEOPS protein complex
GO:0000790; nuclear chromatin
; nuclear chromatin
GO:0031490; chromatin DNA binding
GO:0030528; transcription regulator activity
GO:0031382; mating projection biogenesis
GO:0007329; positive regulation of transcription from RNA polymerase II promoter by pheromones
GO:0032569; specific transcription from RNA polymerase II promoter" ; gene "SPAC4H3.13" ; product "transcriptional regulator Pcc1 (predicted)" ;
chromosome1 GeneDB CDS 3853081 3853112 . + . mRNA SPAC4H3.13 ; colour "7" ;
chromosome1 GeneDB CDS 3853190 3853424 . + . mRNA SPAC4H3.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 3853113 3853118 . + . misc_feature unknown_3244 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3853170 3853189 . + . misc_feature unknown_3245 ; colour "6" ; note "ctaatacctgtaatatgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3853425 3853536 . + . mRNA SPAC4H3.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4H3.13" ; systematic_id "SPAC4H3.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3853592 3853768 . - . mRNA SPAC4H3.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4H3.14c" ; systematic_id "SPAC4H3.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3853769 3854860 . - . mRNA SPAC4H3.14c ; db_xref "SPD:43/43G06" ; systematic_id "SPAC4H3.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC4H3.14c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3853769 3854745 . - . mRNA SPAC4H3.14c ; colour "8" ;
chromosome1 GeneDB CDS 3854800 3854860 . - . mRNA SPAC4H3.14c ; colour "8" ;
chromosome1 GeneDB misc_feature 3854746 3854763 . - . misc_feature unknown_3246 ; colour "6" ; note "ctaatatagcgatcccag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3854794 3854799 . - . misc_feature unknown_3247 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3854859 3854906 . - . mRNA SPAC4H3.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4H3.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3855385 3855779 . - . mRNA SPAC1071.01c ; Alias "SPAC4H3.15c" ; ID "SPAC1071.01c" ; db_xref "SPD:27/27D12" ; systematic_id "SPAC1071.01c" ; primary_name "SPAC4H3.15c" ; gene "SPAC4H3.15c ||| SPAC1071.01c ||| pta1" ; note "mRNA from AU008101" ;
chromosome1 GeneDB CDS_parts 3855780 3857792 . - . mRNA SPAC1071.01c ; systematic_id "SPAC1071.01c" ; colour "2" ; gene "SPAC4H3.15c ||| SPAC1071.01c ||| pta1" ; Alias "pta1" ; db_xref "SPD:27/27D12" ; synonym "SPAC4H3.15c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=20070403 ||| term=orthologous to S. cerevisiae YAL043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0008033; tRNA processing
GO:0006378; mRNA polyadenylation
GO:0006379; mRNA cleavage" ; primary_name "pta1" ; product "mRNA cleavage and polyadenylation specificity factor complex subunit Pta1" ;
chromosome1 GeneDB CDS 3855780 3857792 . - . mRNA SPAC1071.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 3856463 3856562 . + . misc_feature unknown_3248 ; note "nominal overlap with cosmid SPAC1071 and cosmid SPAC4H3" ;
chromosome1 GeneDB 5'-UTR 3857791 3857888 . - . mRNA SPAC1071.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1071.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3858268 3858422 . + . mRNA SPAC1071.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1071.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3858423 3861679 . + . mRNA SPAC1071.02 ; db_xref "SPD:30/30C05" ; systematic_id "SPAC1071.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=20070403 ||| term=orthologous to S. cerevisiae YIL128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human MMS19L ortholog; date=20110113" ; colour "7" ; GO "GO:0006289; nucleotide-excision repair
GO:0006366; transcription from RNA polymerase II promoter
GO:0005654; nucleoplasm" ; gene "SPAC1071.02" ; product "TFIIH regulator (predicted)" ;
chromosome1 GeneDB CDS 3858423 3858891 . + . mRNA SPAC1071.02 ; colour "7" ;
chromosome1 GeneDB CDS 3858935 3859077 . + . mRNA SPAC1071.02 ; colour "7" ;
chromosome1 GeneDB CDS 3859124 3859227 . + . mRNA SPAC1071.02 ; colour "7" ;
chromosome1 GeneDB CDS 3859273 3861564 . + . mRNA SPAC1071.02 ; colour "7" ;
chromosome1 GeneDB CDS 3861631 3861679 . + . mRNA SPAC1071.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 3858892 3858897 . + . misc_feature unknown_3249 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3858919 3858934 . + . misc_feature unknown_3250 ; colour "6" ; note "ttaacttagttctcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3859078 3859083 . + . misc_feature unknown_3251 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3859101 3859123 . + . misc_feature unknown_3252 ; colour "6" ; note "ctaatgaaattacttacatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3859228 3859233 . + . misc_feature unknown_3253 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3859256 3859272 . + . misc_feature unknown_3254 ; colour "6" ; note "ctaaccgtcctttgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3860907 3861718 . - . mRNA SPAC1071.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1071.03c" ; systematic_id "SPAC1071.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3861565 3861570 . + . misc_feature unknown_3255 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3861615 3861630 . + . misc_feature unknown_3256 ; colour "6" ; note "ctaatgaataatatag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 3861719 3862735 . - . mRNA SPAC1071.03c ; db_xref "SPD:15/15B04" ; systematic_id "SPAC1071.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1071.03c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3861719 3862735 . - . mRNA SPAC1071.03c ; colour "8" ;
chromosome1 GeneDB CDS_parts 3863001 3863504 . - . mRNA SPAC1071.04c ; systematic_id "SPAC1071.04c" ; colour "7" ; gene "SPAC1071.04c" ; Alias "spc2" ; db_xref "SPD:42/42B12" ; GO "GO:0005787; signal peptidase complex
GO:0045047; protein targeting to ER
GO:0006465; signal peptide processing" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML055W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spc2" ; product "signal peptidase subunit Spc2 (predicted)" ;
chromosome1 GeneDB CDS 3863001 3863504 . - . mRNA SPAC1071.04c ; colour "7" ;
chromosome1 GeneDB misc_RNA 3863704 3864395 . + . misc_RNA SPNCRNA.237 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.237" ; synonym "SPNG762" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 3864478 3864522 . + . mRNA SPAC1071.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1071.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3864523 3865542 . + . mRNA SPAC1071.05 ; db_xref "SPD:15/15C01" ; systematic_id "SPAC1071.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL110W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human c1orf156 ortholog; date=20100718" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity" ; gene "SPAC1071.05" ; product "S-adenosylmethionine-dependent methyltransferase (predicted)" ;
chromosome1 GeneDB CDS 3864523 3865542 . + . mRNA SPAC1071.05 ; colour "10" ;
chromosome1 GeneDB CDS_parts 3866588 3868159 . + . mRNA SPAC1071.06 ; systematic_id "SPAC1071.06" ; colour "2" ; gene "arp9 ||| SPAC1071.06" ; Alias "arp9" ; db_xref "SPD:25/25D02" ; GO "GO:0016586; RSC complex
GO:0016514; SWI/SNF complex
GO:0000790; nuclear chromatin
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR033W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to Brefeldin A ; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110" ; primary_name "arp9" ; product "SWI/SNF and RSC complex subunit Arp9" ;
chromosome1 GeneDB CDS 3866588 3868159 . + . mRNA SPAC1071.06 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3868160 3868327 . + . mRNA SPAC1071.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1071.06" ; systematic_id "SPAC1071.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3868441 3868495 . - . mRNA SPAC1071.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1071.07c" ; systematic_id "SPAC1071.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3868496 3868960 . - . mRNA SPAC1071.07c ; systematic_id "SPAC1071.07c" ; colour "7" ; gene "rps1502 ||| rps15-2 ||| rps15 ||| SPAC1071.07c" ; Alias "rps1502" ; db_xref "SPD:42/42B06" ; synonym "rps15-2 ||| rps15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000056; ribosomal small subunit export from nucleus" ; primary_name "rps1502" ; product "40S ribosomal protein S15 (predicted)" ;
chromosome1 GeneDB CDS 3868496 3868960 . - . mRNA SPAC1071.07c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3868959 3868989 . - . mRNA SPAC1071.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1071.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3869103 3869144 . + . mRNA SPAC1071.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1071.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3869145 3869571 . + . mRNA SPAC1071.08 ; systematic_id "SPAC1071.08" ; colour "2" ; gene "rpp203 ||| rpp2-3 ||| rla6 ||| SPAC1071.08" ; Alias "rpp203" ; db_xref "SPD:03/03E03" ; synonym "rpp2-3 ||| rla6" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL039W and YDR382W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006414; translational elongation" ; primary_name "rpp203" ; product "60S acidic ribosomal protein P2C subunit" ;
chromosome1 GeneDB CDS 3869145 3869453 . + . mRNA SPAC1071.08 ; colour "2" ;
chromosome1 GeneDB CDS 3869548 3869571 . + . mRNA SPAC1071.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 3869454 3869459 . + . misc_feature unknown_3257 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3869454 3869547 . + . intron SPAC1071.08 ; Alias "rpp203" ; db_xref "SPD:03/03E03" ; systematic_id "SPAC1071.08" ; primary_name "rpp203" ; gene "rpp203 ||| rpp2-3 ||| rla6 ||| SPAC1071.08" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3869530 3869547 . + . misc_feature unknown_3258 ; colour "6" ; note "ctaaccaatcatgtgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3869572 3869594 . + . mRNA SPAC1071.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1071.08" ; systematic_id "SPAC1071.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3870660 3871508 . - . mRNA SPAC1071.09c ; db_xref "SPD:11/11A12" ; systematic_id "SPAC1071.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding" ; gene "SPAC1071.09c" ; product "DNAJ domain protein, DNAJC9 family (predicted)" ;
chromosome1 GeneDB CDS 3870660 3871508 . - . mRNA SPAC1071.09c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3871642 3871919 . - . mRNA SPAC1071.10c ; Alias "pma1" ; ID "SPAC1071.10c" ; db_xref "SPD:39/39A12" ; systematic_id "SPAC1071.10c" ; primary_name "pma1" ; gene "pma1 ||| SPAC1071.10c" ; note "mRNA from AU007984" ;
chromosome1 GeneDB CDS_parts 3871920 3874679 . - . mRNA SPAC1071.10c ; systematic_id "SPAC1071.10c" ; colour "2" ; gene "pma1 ||| SPAC1071.10c" ; Alias "pma1" ; db_xref "SPD:39/39A12" ; GO "GO:0005886; plasma membrane
GO:0008553; hydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0015992; proton transport
GO:0006885; regulation of pH
GO:0005887; integral to plasma membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL008C; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "pma1" ; product "P-type proton ATPase, P3-type Pma1" ; EC_number "3.6.3.6" ;
chromosome1 GeneDB CDS 3871920 3874679 . - . mRNA SPAC1071.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3874678 3876086 . - . mRNA SPAC1071.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1071.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3874862 3882009 . + . misc_feature unknown_3259 ; note "low complexity region; has transcripts but may be non-CDS" ;
chromosome1 GeneDB misc_RNA 3875656 3876105 . + . misc_RNA SPNCRNA.92 ; db_xref "EMBL:AU008923" ; systematic_id "SPNCRNA.92" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU008923; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU008923; date=20050412 ||| term=genome organization, low complexity gene free region; qualifier=predicted; db_xref=EMBL:AU008923; cv=genome_org; date=20050412" ; gene "SPNCRNA.92" ; product "non-coding RNA (predicted)" ; note "strand altered 19.6.2003, evidence from microarray profile (pers comm. Jurg Bahler)" ;
chromosome1 GeneDB misc_RNA 3876757 3877223 . + . misc_RNA SPNCRNA.93 ; db_xref "EMBL:AU010570" ; systematic_id "SPNCRNA.93" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU010570; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU010570; date=20050412 ||| term=genome organization, low complexity gene free region; qualifier=predicted; db_xref=EMBL:AU010570; cv=genome_org; date=20050412" ; gene "SPNCRNA.93" ; product "non-coding RNA (predicted)" ; note "possibly spurious, expression low on both strands (pers comm. Jurg Bahler)" ;
chromosome1 GeneDB misc_feature 3877845 3878724 . + . misc_feature unknown_3260 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG766 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_RNA 3879508 3880008 . + . misc_RNA SPNCRNA.94 ; db_xref "EMBL:AU009551" ; systematic_id "SPNCRNA.94" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU009551; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU009551; date=20050412 ||| term=genome organization, low complexity gene free region; qualifier=predicted; db_xref=EMBL:AU009551; cv=genome_org; date=20050412" ; gene "SPNCRNA.94" ; product "non-coding RNA (predicted)" ; note "mRNA from AU009551. mRNA not associated with an ORF ||| possibly spurious, expression low on both strands (pers comm. Jurg Bahler)" ;
chromosome1 GeneDB 5'-UTR 3882010 3882526 . + . mRNA SPAC1071.11 ; ID "SPAC1071.11" ; systematic_id "SPAC1071.11" ; gene "SPAC1071.11" ; note "mRNA from AU013848 ||| possibly spurious, expression low on both strands (pers comm. Jurg Bahler)" ;
chromosome1 GeneDB CDS_parts 3882527 3883261 . + . mRNA SPAC1071.11 ; db_xref "SPD:08/08H01" ; systematic_id "SPAC1071.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; gene "SPAC1071.11" ; product "NADH-dependent flavin oxidoreductase (predicted)" ;
chromosome1 GeneDB CDS 3882527 3883261 . + . mRNA SPAC1071.11 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3883507 3883620 . - . mRNA SPAC1071.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1071.12c" ; systematic_id "SPAC1071.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3883621 3884091 . - . mRNA SPAC1071.12c ; systematic_id "SPAC1071.12c" ; colour "2" ; gene "stp1 ||| SPAC926.01c ||| SPAC1071.12c" ; Alias "stp1" ; db_xref "SPD:04/04C11" ; synonym "SPAC926.01c" ; GO "GO:0007346; regulation of mitotic cell cycle
GO:0004726; non-membrane spanning protein tyrosine phosphatatase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7961734; date=19700101 ||| term=phenotype, no obvious phenotype; qualifier=deletion; cv=phenotype; db_xref=PMID:7961734; date=19700101 ||| term=orthologous to S. cerevisiae YPR073C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "stp1" ; product "dual specificity phosphatase Stp1" ; EC_number "3.1.3.2" ;
chromosome1 GeneDB CDS 3883621 3884091 . - . mRNA SPAC1071.12c ; colour "2" ;
chromosome1 GeneDB misc_feature 3883918 3883922 . + . misc_feature unknown_3261 ; note "nominal overlap with cosmid SPAC926 and cosmid SPAC1071" ;
chromosome1 GeneDB 5'-UTR 3884092 3884346 . - . mRNA SPAC1071.12c ; Alias "stp1" ; ID "SPAC1071.12c" ; systematic_id "SPAC1071.12c" ; primary_name "stp1" ; gene "stp1 ||| SPAC926.01c ||| SPAC1071.12c" ; note "mRNA from SPLMPTP" ;
chromosome1 GeneDB CDS_parts 3884544 3886031 . + . mRNA SPAC926.02 ; db_xref "SPD:24/24A04" ; systematic_id "SPAC926.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL193W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC926.02" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 3884544 3884687 . + . mRNA SPAC926.02 ; colour "10" ;
chromosome1 GeneDB CDS 3884844 3886031 . + . mRNA SPAC926.02 ; colour "10" ;
chromosome1 GeneDB misc_feature 3884688 3884693 . + . misc_feature unknown_3262 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3884830 3884843 . + . misc_feature unknown_3263 ; colour "6" ; note "ctaacaagcaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3885465 3886096 . - . mRNA SPAC926.10 ; db_xref "PMID:21270388" ; systematic_id "SPAC926.10" ;
chromosome1 GeneDB CDS_parts 3886097 3886270 . - . mRNA SPAC926.10 ; Alias "new9" ; systematic_id "SPAC926.10" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "new9" ; gene "SPAC926.10" ; product "sequence orphan" ; note "check conservation" ;
chromosome1 GeneDB CDS 3886097 3886270 . - . mRNA SPAC926.10 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 3886271 3886477 . - . mRNA SPAC926.10 ; db_xref "PMID:21270388" ; systematic_id "SPAC926.10" ;
chromosome1 GeneDB 5'-UTR 3887139 3887569 . + . mRNA SPAC926.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC926.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3887570 3888124 . + . mRNA SPAC926.03 ; systematic_id "SPAC926.03" ; colour "2" ; gene "rlc1 ||| SPAC926.03" ; Alias "rlc1" ; db_xref "SPD:05/05F10" ; GO "GO:0017022; myosin binding
GO:0017022; myosin binding
GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0005509; calcium ion binding
GO:0016460; myosin II complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11069761; date=19700101 ||| term=orthologous to S. cerevisiae YPR188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rlc1" ; product "myosin II regulatory light chain Rlc1" ;
chromosome1 GeneDB CDS 3887570 3888124 . + . mRNA SPAC926.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3888125 3888516 . + . mRNA SPAC926.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC926.03" ; systematic_id "SPAC926.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3888573 3888773 . - . mRNA SPAC926.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC926.04c" ; systematic_id "SPAC926.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3888774 3890888 . - . mRNA SPAC926.04c ; systematic_id "SPAC926.04c" ; colour "2" ; gene "SPAC926.04c" ; Alias "hsp90" ; db_xref "SPD:28/28A02" ; synonym "swo1 ||| git10" ; GO "GO:0042623; ATPase activity, coupled
GO:0006457; protein folding
GO:0033554; cellular response to stress
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0045014; negative regulation of transcription by glucose
GO:0007584; response to nutrient
GO:0019933; cAMP-mediated signaling
GO:0000747; conjugation with cellular fusion
GO:0061077; chaperone-mediated protein folding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to high temperature; cv=phenotype; db_xref=PMID:18430926; date=20090114 ||| term=phenotype, growth defect, slow growth at high temperatures; cv=phenotype; db_xref=PMID:18430926; date=20090114 ||| term=phenotype, glucose repression defects; cv=phenotype; db_xref=PMID:18430926; date=20090114 ||| term=phenotype, cell morphology, small cells; qualifier=mutant_allele|point_mutation; db_xref=PMID:7813446; date=20101207 ||| term=orthologous to S. cerevisiae YPL240C and YMR186W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=target is Git7; evidence=TAS; db_xref=PMID:18430926; date=20090114 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=pathway, PKA; cv=pathway; db_xref=PMID:18430926; date=20091215 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=misc functional group, chaperone; cv=m_f_g; date=20100126 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100208 ||| term=human HSPCA and HSPCB ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "hsp90" ; product "Hsp90 chaperone" ;
chromosome1 GeneDB CDS 3888774 3890888 . - . mRNA SPAC926.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 3890887 3891098 . - . mRNA SPAC926.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC926.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB rRNA 3891662 3891784 . - . rRNA SPRRNA.18 ; systematic_id "SPRRNA.18" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.18" ; product "5S rRNA" ; note "putative 5S rRNA gene and spliced leader" ;
chromosome1 GeneDB 3'-UTR 3892148 3892299 . - . mRNA SPAC926.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC926.05c" ; systematic_id "SPAC926.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3892300 3892758 . - . mRNA SPAC926.05c ; systematic_id "SPAC926.05c" ; colour "7" ; gene "SPAC926.05c" ; Alias "dph4" ; db_xref "SPD:04/04A12" ; GO "GO:0030544; Hsp70 protein binding
GO:0017183; peptidyl-diphthamide biosynthetic process from peptidyl-histidine
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CSL; date=19700101 ||| term=orthologous to S. cerevisiae YJR097W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human DPH4 ortholog; date=20100120" ; primary_name "dph4" ; product "diphthamide biosynthesis protein Dph4 (predicted)" ;
chromosome1 GeneDB CDS 3892300 3892505 . - . mRNA SPAC926.05c ; colour "7" ;
chromosome1 GeneDB CDS 3892545 3892758 . - . mRNA SPAC926.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 3892506 3892518 . - . misc_feature unknown_3264 ; colour "6" ; note "ttaatctaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3892539 3892544 . - . misc_feature unknown_3265 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3893233 3893321 . - . mRNA SPAC926.06c ; ID "SPAC926.06c" ; db_xref "SPD:36/36H08" ; systematic_id "SPAC926.06c" ; gene "SPAC926.06c" ; note "mRNA from AU013164" ;
chromosome1 GeneDB CDS_parts 3893322 3895187 . - . mRNA SPAC926.06c ; db_xref "SPD:36/36H08" ; systematic_id "SPAC926.06c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC926.06c" ; product "leucine-rich repeat protein, unknown" ;
chromosome1 GeneDB CDS 3893322 3895187 . - . mRNA SPAC926.06c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 3895186 3895608 . - . mRNA SPAC926.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC926.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3896266 3896631 . - . mRNA SPAC926.07c ; ID "SPAC926.07c" ; db_xref "SPD:04/04G10" ; systematic_id "SPAC926.07c" ; gene "SPAC926.07c ||| dlc2" ; note "mRNA from AF197476" ;
chromosome1 GeneDB CDS_parts 3896632 3897128 . - . mRNA SPAC926.07c ; systematic_id "SPAC926.07c" ; colour "7" ; gene "SPAC926.07c ||| dlc2" ; Alias "dlc2" ; db_xref "SPD:04/04G10" ; GO "GO:0005868; cytoplasmic dynein complex
GO:0030029; actin filament-based process
GO:0031122; cytoplasmic microtubule organization
GO:0007018; microtubule-based movement
GO:0007017; microtubule-based process
GO:0030437; ascospore formation
GO:0030989; horsetail nuclear movement
GO:0000743; nuclear movement during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR424C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dlc2" ; product "dynein light chain Dlc2 (predicted)" ;
chromosome1 GeneDB CDS 3896632 3896696 . - . mRNA SPAC926.07c ; colour "7" ;
chromosome1 GeneDB CDS 3896767 3896863 . - . mRNA SPAC926.07c ; colour "7" ;
chromosome1 GeneDB CDS 3896937 3896971 . - . mRNA SPAC926.07c ; colour "7" ;
chromosome1 GeneDB CDS 3897018 3897051 . - . mRNA SPAC926.07c ; colour "7" ;
chromosome1 GeneDB CDS 3897102 3897128 . - . mRNA SPAC926.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 3896697 3896712 . - . misc_feature unknown_3266 ; colour "6" ; note "ctgacactttaaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3896697 3896766 . - . intron SPAC926.07c ; db_xref "SPD:04/04G10" ; systematic_id "SPAC926.07c" ; gene "SPAC926.07c ||| dlc2" ; note "confirmed by mRNA from AF197476" ;
chromosome1 GeneDB misc_feature 3896761 3896766 . - . misc_feature unknown_3267 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3896864 3896880 . - . misc_feature unknown_3268 ; colour "6" ; note "ctaacatagagataaag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3896864 3896936 . - . intron SPAC926.07c ; db_xref "SPD:04/04G10" ; systematic_id "SPAC926.07c" ; gene "SPAC926.07c ||| dlc2" ; note "confirmed by mRNA from AF197476" ;
chromosome1 GeneDB misc_feature 3896931 3896936 . - . misc_feature unknown_3269 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 3896972 3897017 . - . intron SPAC926.07c ; db_xref "SPD:04/04G10" ; systematic_id "SPAC926.07c" ; gene "SPAC926.07c ||| dlc2" ; note "confirmed by mRNA from AF197476" ;
chromosome1 GeneDB misc_feature 3897012 3897017 . - . misc_feature unknown_3270 ; colour "6" ; note "gtagat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3897052 3897068 . - . misc_feature unknown_3271 ; colour "6" ; note "ctaatcgattattatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3897052 3897101 . - . intron SPAC926.07c ; db_xref "SPD:04/04G10" ; systematic_id "SPAC926.07c" ; gene "SPAC926.07c ||| dlc2" ; note "confirmed by mRNA from AF197476" ;
chromosome1 GeneDB misc_feature 3897096 3897101 . - . misc_feature unknown_3272 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3897129 3897252 . - . mRNA SPAC926.07c ; ID "SPAC926.07c" ; systematic_id "SPAC926.07c" ; gene "SPAC926.07c ||| dlc2" ; note "mRNA from AF197476" ;
chromosome1 GeneDB 3'-UTR 3898301 3898583 . - . mRNA SPAC926.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC926.08c" ; systematic_id "SPAC926.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3898584 3899687 . - . mRNA SPAC926.08c ; db_xref "SPD:17/17C12" ; systematic_id "SPAC926.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0042254; ribosome biogenesis and assembly
GO:0006364; rRNA processing
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0003723; RNA binding" ; gene "SPAC926.08c" ; product "Brix domain protein Rpf2 (predicted)" ;
chromosome1 GeneDB CDS 3898584 3899153 . - . mRNA SPAC926.08c ; colour "7" ;
chromosome1 GeneDB CDS 3899257 3899626 . - . mRNA SPAC926.08c ; colour "7" ;
chromosome1 GeneDB CDS 3899674 3899687 . - . mRNA SPAC926.08c ; colour "7" ;
chromosome1 GeneDB misc_feature 3899154 3899173 . - . misc_feature unknown_3273 ; colour "6" ; note "ctaacgtgtttattgttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3899251 3899256 . - . misc_feature unknown_3274 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3899627 3899638 . - . misc_feature unknown_3275 ; colour "6" ; note "ttaacagtctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3899668 3899673 . - . misc_feature unknown_3276 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 3900130 3900366 . - . mRNA SPAC926.09c ; Alias "fas1" ; ID "SPAC926.09c" ; db_xref "SPD:34/34C03" ; systematic_id "SPAC926.09c" ; primary_name "fas1" ; gene "fas1 ||| SPAC926.09c" ; note "mRNA from AU011610" ;
chromosome1 GeneDB CDS_parts 3900367 3906588 . - . mRNA SPAC926.09c ; systematic_id "SPAC926.09c" ; colour "2" ; gene "fas1 ||| SPAC926.09c" ; Alias "fas1" ; db_xref "SPD:34/34C03" ; GO "GO:0004321; fatty-acyl-CoA synthase activity
GO:0004318; enoyl-[acyl-carrier-protein] reductase (NADH) activity
GO:0004317; 3-hydroxypalmitoyl-[acyl-carrier- protein] dehydratase activity
GO:0004314; [acyl-carrier-protein] S- malonyltransferase activity
GO:0004313; [acyl-carrier-protein] S- acetyltransferase activity
GO:0006633; fatty acid biosynthesis
GO:0005835; fatty acid synthase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL182W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "fas1" ; product "fatty acid synthase beta subunit Fas1" ; EC_number "3.1.2.14 ||| 2.3.1.86 ||| 4.2.1.61 ||| 1.3.1.9 ||| 2.3.1.38 ||| 2.3.1.39" ;
chromosome1 GeneDB CDS 3900367 3906588 . - . mRNA SPAC926.09c ; colour "2" ;
chromosome1 GeneDB conflict 3902164 3902164 . + . conflict unknown_3277 ; citation "[1]" ; note "conflict; this base is missing from the cosmid c926, but is present in the overlap with cosmid c323. The base has been added here, as its ommission introduces a frameshift into SPAC926.09c, and this region of c323 has been cut to nominal." ;
chromosome1 GeneDB 5'-UTR 3906587 3907050 . - . mRNA SPAC926.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC926.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3907008 3907110 . + . misc_feature unknown_3278 ; note "nominal overlap with cosmid SPAC926 and cosmid PAC323" ;
chromosome1 GeneDB 3'-UTR 3907485 3907585 . - . mRNA SPAC323.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC323.01c" ; systematic_id "SPAC323.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3907586 3908795 . - . mRNA SPAC323.01c ; systematic_id "SPAC323.01c" ; colour "7" ; gene "SPAC323.01c" ; db_xref "SPD:19/19C07" ; Alias "pos5" ; GO "GO:0005759; mitochondrial matrix
GO:0042736; NADH kinase activity
GO:0006741; NADP biosynthesis
GO:0016266; iron-sulfur cluster assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL188W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "pos5" ; product "mitochondrial NADH kinase Pos5 (predicted)" ; EC_number "2.7.1.86" ;
chromosome1 GeneDB CDS 3907586 3908550 . - . mRNA SPAC323.01c ; colour "7" ;
chromosome1 GeneDB CDS 3908675 3908795 . - . mRNA SPAC323.01c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3908794 3908809 . - . mRNA SPAC323.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC323.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3909300 3909388 . - . mRNA SPAC323.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC323.02c" ; systematic_id "SPAC323.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3909389 3910371 . - . mRNA SPAC323.02c ; systematic_id "SPAC323.02c" ; colour "7" ; gene "pup2 ||| SPAC323.02c" ; Alias "pup2" ; db_xref "SPD:14/14C01" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR253C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pup2" ; product "20S proteasome component alpha 5, Pup2 (predicted)" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB CDS 3909389 3909568 . - . mRNA SPAC323.02c ; colour "7" ;
chromosome1 GeneDB CDS 3909632 3909734 . - . mRNA SPAC323.02c ; colour "7" ;
chromosome1 GeneDB CDS 3909873 3910314 . - . mRNA SPAC323.02c ; colour "7" ;
chromosome1 GeneDB CDS 3910353 3910371 . - . mRNA SPAC323.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 3909569 3909585 . - . misc_feature unknown_3279 ; colour "6" ; note "ctaacaatgtcgttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3909626 3909631 . - . misc_feature unknown_3280 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3909735 3909750 . - . misc_feature unknown_3281 ; colour "6" ; note "ctaacttcctatacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3909867 3909872 . - . misc_feature unknown_3282 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3910315 3910325 . - . misc_feature unknown_3283 ; colour "6" ; note "ctaatctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3910347 3910352 . - . misc_feature unknown_3284 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3910370 3910407 . - . mRNA SPAC323.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC323.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3910681 3910739 . - . mRNA SPAC323.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC323.03c" ; systematic_id "SPAC323.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3910740 3912604 . - . mRNA SPAC323.03c ; db_xref "SPD:26/26C09" ; systematic_id "SPAC323.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC323.03c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3910740 3911784 . - . mRNA SPAC323.03c ; colour "8" ;
chromosome1 GeneDB CDS 3911828 3911964 . - . mRNA SPAC323.03c ; colour "8" ;
chromosome1 GeneDB CDS 3912017 3912500 . - . mRNA SPAC323.03c ; colour "8" ;
chromosome1 GeneDB CDS 3912543 3912604 . - . mRNA SPAC323.03c ; colour "8" ;
chromosome1 GeneDB misc_feature 3911785 3911797 . - . misc_feature unknown_3285 ; colour "6" ; note "ctaaatgatgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3911822 3911827 . - . misc_feature unknown_3286 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3911965 3911977 . - . misc_feature unknown_3287 ; colour "6" ; note "ctaattgtctcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3912011 3912016 . - . misc_feature unknown_3288 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3912501 3912513 . - . misc_feature unknown_3289 ; colour "6" ; note "ttaacaatccaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3912537 3912542 . - . misc_feature unknown_3290 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3912664 3912772 . + . mRNA SPAC323.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC323.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3912773 3914524 . + . mRNA SPAC323.04 ; db_xref "SPD:36/36A06" ; systematic_id "SPAC323.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDR061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; GO "GO:0005524; ATP binding
GO:0016020; membrane
GO:0005739; mitochondrion
GO:0016887; ATPase activity" ; gene "SPAC323.04" ; product "mitochondrial ATPase (predicted)" ;
chromosome1 GeneDB CDS 3912773 3912916 . + . mRNA SPAC323.04 ; colour "10" ;
chromosome1 GeneDB CDS 3913097 3913481 . + . mRNA SPAC323.04 ; colour "10" ;
chromosome1 GeneDB CDS 3913544 3914055 . + . mRNA SPAC323.04 ; colour "10" ;
chromosome1 GeneDB CDS 3914102 3914524 . + . mRNA SPAC323.04 ; colour "10" ;
chromosome1 GeneDB misc_feature 3912917 3912922 . + . misc_feature unknown_3291 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3913083 3913096 . + . misc_feature unknown_3292 ; colour "6" ; note "ctaactcaatacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3913482 3913487 . + . misc_feature unknown_3293 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3913525 3913543 . + . misc_feature unknown_3294 ; colour "6" ; note "ctaacagtattttttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3913590 3914604 . - . mRNA SPAC323.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC323.05c" ; systematic_id "SPAC323.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3914056 3914061 . + . misc_feature unknown_3295 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3914087 3914101 . + . misc_feature unknown_3296 ; colour "6" ; note "ctaacgactttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3914525 3914697 . + . mRNA SPAC323.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC323.04" ; systematic_id "SPAC323.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3914605 3915471 . - . mRNA SPAC323.05c ; db_xref "SPD:11/11F09" ; systematic_id "SPAC323.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0008276; protein methyltransferase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006417; regulation of translation
GO:0035657; eRF1 methyl transferase complex" ; gene "SPAC323.05c" ; product "protein methyltransferase Mtq2 (predicted)" ;
chromosome1 GeneDB CDS 3914605 3914790 . - . mRNA SPAC323.05c ; colour "7" ;
chromosome1 GeneDB CDS 3914838 3915124 . - . mRNA SPAC323.05c ; colour "7" ;
chromosome1 GeneDB CDS 3915166 3915227 . - . mRNA SPAC323.05c ; colour "7" ;
chromosome1 GeneDB CDS 3915267 3915360 . - . mRNA SPAC323.05c ; colour "7" ;
chromosome1 GeneDB CDS 3915405 3915471 . - . mRNA SPAC323.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 3914791 3914812 . - . misc_feature unknown_3297 ; colour "6" ; note "ttaataactcatttatggatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3914832 3914837 . - . misc_feature unknown_3298 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3915125 3915135 . - . misc_feature unknown_3299 ; colour "6" ; note "ctgatgtctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3915160 3915165 . - . misc_feature unknown_3300 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3915228 3915238 . - . misc_feature unknown_3301 ; colour "6" ; note "ttaacctgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3915261 3915266 . - . misc_feature unknown_3302 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3915361 3915376 . - . misc_feature unknown_3303 ; colour "6" ; note "ctaattacacttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3915399 3915404 . - . misc_feature unknown_3304 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 3915615 3917531 . - . mRNA SPAC323.06c ; systematic_id "SPAC323.06c" ; colour "7" ; gene "uba5 ||| SPAC323.06c" ; Alias "uba5" ; db_xref "SPD:26/26G01" ; GO "GO:0019781; NEDD8 activating enzyme activity
GO:0045116; protein neddylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "uba5" ; product "NEDD8 activating enzyme (predicted)" ;
chromosome1 GeneDB CDS 3915615 3915698 . - . mRNA SPAC323.06c ; colour "7" ;
chromosome1 GeneDB CDS 3915746 3915821 . - . mRNA SPAC323.06c ; colour "7" ;
chromosome1 GeneDB CDS 3915865 3916021 . - . mRNA SPAC323.06c ; colour "7" ;
chromosome1 GeneDB CDS 3916108 3916298 . - . mRNA SPAC323.06c ; colour "7" ;
chromosome1 GeneDB CDS 3916340 3916527 . - . mRNA SPAC323.06c ; colour "7" ;
chromosome1 GeneDB CDS 3916569 3916873 . - . mRNA SPAC323.06c ; colour "7" ;
chromosome1 GeneDB CDS 3916913 3917102 . - . mRNA SPAC323.06c ; colour "7" ;
chromosome1 GeneDB CDS 3917140 3917303 . - . mRNA SPAC323.06c ; colour "7" ;
chromosome1 GeneDB CDS 3917347 3917459 . - . mRNA SPAC323.06c ; colour "7" ;
chromosome1 GeneDB CDS 3917497 3917531 . - . mRNA SPAC323.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 3915699 3915713 . - . misc_feature unknown_3305 ; colour "6" ; note "ctaactttactttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3915740 3915745 . - . misc_feature unknown_3306 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3915822 3915834 . - . misc_feature unknown_3307 ; colour "6" ; note "ctaatagtttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3915859 3915864 . - . misc_feature unknown_3308 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3916022 3916054 . - . misc_feature unknown_3309 ; colour "6" ; note "ttgactcaaattctttacttccgtggtatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3916102 3916107 . - . misc_feature unknown_3310 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3916299 3916310 . - . misc_feature unknown_3311 ; colour "6" ; note "ctaatatttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3916334 3916339 . - . misc_feature unknown_3312 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3916528 3916541 . - . misc_feature unknown_3313 ; colour "6" ; note "ttaatatgaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3916563 3916568 . - . misc_feature unknown_3314 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3916874 3916887 . - . misc_feature unknown_3315 ; colour "6" ; note "ctaactaaagttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3916907 3916912 . - . misc_feature unknown_3316 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3917103 3917115 . - . misc_feature unknown_3317 ; colour "6" ; note "ctaacgtttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3917134 3917139 . - . misc_feature unknown_3318 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3917304 3917320 . - . misc_feature unknown_3319 ; colour "6" ; note "ctaaatagacgtaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3917341 3917346 . - . misc_feature unknown_3320 ; colour "6" ; note "gtattg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3917460 3917469 . - . misc_feature unknown_3321 ; colour "6" ; note "ttaatcatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3917491 3917496 . - . misc_feature unknown_3322 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 3918201 3919864 . - . mRNA SPAC323.07c ; db_xref "SPD:34/34H03" ; systematic_id "SPAC323.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR338C and YHR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; gene "SPAC323.07c" ; product "MatE family transporter (predicted)" ;
chromosome1 GeneDB CDS 3918201 3919140 . - . mRNA SPAC323.07c ; colour "7" ;
chromosome1 GeneDB CDS 3919203 3919864 . - . mRNA SPAC323.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 3919141 3919158 . - . misc_feature unknown_3323 ; colour "6" ; note "ctaactgtattcttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3919197 3919202 . - . misc_feature unknown_3324 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3919863 3920033 . - . mRNA SPAC323.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC323.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3921018 3921075 . + . mRNA SPAC323.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC323.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3921076 3921711 . + . mRNA SPAC323.08 ; db_xref "SPD:07/07C07" ; systematic_id "SPAC323.08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR145W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000172; ribonuclease MRP complex
GO:0006364; rRNA processing
GO:0006379; mRNA cleavage" ; gene "SPAC323.08" ; product "ribonuclease MRP complex subunit (predicted)" ;
chromosome1 GeneDB CDS 3921076 3921711 . + . mRNA SPAC323.08 ; colour "7" ;
chromosome1 GeneDB CDS_parts 3922354 3923313 . + . mRNA SPAC2F3.01 ; systematic_id "SPAC2F3.01" ; colour "2" ; gene "SPAC323.09 ||| SPAC2F3.01" ; Alias "imt1" ; db_xref "SPD:13/13F01" ; synonym "SPAC323.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; cv=phenotype; db_xref=PMID:20388730; date=20100622 ||| term=phenotype, cell morphology, pear shaped; db_xref=PMID:20388730; date=20100622 ||| term=orthologous to S. cerevisiae YBR161W and YPL057C; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=name description, Ipc Mannosyl- Transferase homologue; db_xref=PMID:20388730; date=20100622 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000030; mannosyltransferase activity
GO:0005537; mannose binding
GO:0051999; mannose inositol phosphoceramide biosynthetic process
GO:0033106; cis-Golgi network membrane
GO:0032588; trans-Golgi network membrane
GO:0006897; endocytosis
GO:0007038; endocytosed protein transport to vacuole" ; primary_name "imt1" ; product "mannosyltransferase Imt1" ;
chromosome1 GeneDB CDS 3922354 3923313 . + . mRNA SPAC2F3.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 3922416 3922465 . + . misc_feature unknown_3325 ; note "nominal overlap with cosmid SPAC2F3 and SPAC323" ;
chromosome1 GeneDB 3'-UTR 3923314 3923496 . + . mRNA SPAC2F3.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.01" ; systematic_id "SPAC2F3.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3923657 3923692 . - . mRNA SPAC2F3.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.17c" ; systematic_id "SPAC2F3.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3923693 3924079 . - . mRNA SPAC2F3.17c ; systematic_id "SPAC2F3.17c" ; colour "7" ; gene "lsm6 ||| SPAC2F3.17c" ; Alias "lsm6" ; db_xref "SPD:02/02H02" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005688; snRNP U6
GO:0030490; maturation of SSU-rRNA" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR378C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "lsm6" ; product "U6 snRNP-associated protein Lsm6 (predicted)" ;
chromosome1 GeneDB CDS 3923693 3923721 . - . mRNA SPAC2F3.17c ; colour "7" ;
chromosome1 GeneDB CDS 3923772 3923885 . - . mRNA SPAC2F3.17c ; colour "7" ;
chromosome1 GeneDB CDS 3923995 3924079 . - . mRNA SPAC2F3.17c ; colour "7" ;
chromosome1 GeneDB misc_feature 3923722 3923739 . - . misc_feature unknown_3326 ; colour "6" ; note "ctaactaccgtccaacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3923722 3923771 . - . intron SPAC2F3.17c ; Alias "lsm6" ; db_xref "SPD:02/02H02" ; systematic_id "SPAC2F3.17c" ; primary_name "lsm6" ; gene "lsm6 ||| SPAC2F3.17c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3923766 3923771 . - . misc_feature unknown_3327 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3923886 3923908 . - . misc_feature unknown_3328 ; colour "6" ; note "ttaatactaaacctgttttttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 3923886 3923994 . - . intron SPAC2F3.17c ; Alias "lsm6" ; db_xref "SPD:02/02H02" ; systematic_id "SPAC2F3.17c" ; primary_name "lsm6" ; gene "lsm6 ||| SPAC2F3.17c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3923989 3923994 . - . misc_feature unknown_3329 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3924078 3924158 . - . mRNA SPAC2F3.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F3.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 3924228 3924580 . + . LTR unknown_3330 ; note "TF1" ;
chromosome1 GeneDB 5'-UTR 3924654 3924752 . + . mRNA SPAC2F3.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F3.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3924753 3925331 . + . mRNA SPAC2F3.02 ; db_xref "SPD:06/06C04" ; systematic_id "SPAC2F3.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR292C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0006620; posttranslational protein targeting to membrane
GO:0005789; endoplasmic reticulum membrane
GO:0031207; Sec62/Sec63 complex" ; gene "SPAC2F3.02" ; product "ER protein translocation subcomplex subunit Sec72 (predicted)" ;
chromosome1 GeneDB CDS 3924753 3925331 . + . mRNA SPAC2F3.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3925332 3925694 . + . mRNA SPAC2F3.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.02" ; systematic_id "SPAC2F3.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3925751 3925982 . - . mRNA SPAC2F3.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.03c" ; systematic_id "SPAC2F3.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3925983 3927260 . - . mRNA SPAC2F3.03c ; systematic_id "SPAC2F3.03c" ; colour "7" ; gene "rpa49 ||| rpa51 ||| SPAC2F3.03c" ; Alias "rpa49" ; db_xref "SPD:20/20D11" ; synonym "rpa51" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0006360; transcription from RNA polymerase I promoter
GO:0005736; DNA-directed RNA polymerase I complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL248C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpa49" ; product "DNA-directed RNA polymerase I complex subunit Rpa49 (predicted)" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB CDS 3925983 3927260 . - . mRNA SPAC2F3.03c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3927259 3927292 . - . mRNA SPAC2F3.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F3.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3927436 3927780 . - . mRNA SPAC2F3.04c ; Alias "rim1" ; ID "SPAC2F3.04c" ; db_xref "EMBL:AB191155 ||| SPD:05/05D08" ; systematic_id "SPAC2F3.04c" ; gene "SPAC2F3.04c ||| rim1" ; primary_name "rim1" ;
chromosome1 GeneDB CDS_parts 3927781 3928317 . - . mRNA SPAC2F3.04c ; systematic_id "SPAC2F3.04c" ; colour "2" ; gene "SPAC2F3.04c ||| rim1" ; Alias "rim1" ; db_xref "SPD:05/05D08" ; GO "GO:0042645; mitochondrial nucleoid
GO:0003697; single-stranded DNA binding
GO:0006264; mitochondrial DNA replication
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR028C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rim1" ; product "mitochondrial single-stranded DNA binding protein Rim1" ;
chromosome1 GeneDB CDS 3927781 3927884 . - . mRNA SPAC2F3.04c ; colour "2" ;
chromosome1 GeneDB CDS 3927969 3928317 . - . mRNA SPAC2F3.04c ; colour "2" ;
chromosome1 GeneDB intron 3927885 3927968 . - . intron SPAC2F3.04c ; Alias "rim1" ; db_xref "EMBL:AB191155 ||| SPD:05/05D08" ; systematic_id "SPAC2F3.04c" ; gene "SPAC2F3.04c ||| rim1" ; primary_name "rim1" ; note "confirmed" ;
chromosome1 GeneDB 5'-UTR 3928318 3928377 . - . mRNA SPAC2F3.04c ; Alias "rim1" ; ID "SPAC2F3.04c" ; db_xref "EMBL:AB191155" ; systematic_id "SPAC2F3.04c" ; gene "SPAC2F3.04c ||| rim1" ; primary_name "rim1" ;
chromosome1 GeneDB 3'-UTR 3928721 3928808 . - . mRNA SPAC2F3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.05c" ; systematic_id "SPAC2F3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3928809 3929636 . - . mRNA SPAC2F3.05c ; db_xref "SPD:10/10F12" ; systematic_id "SPAC2F3.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "7" ; GO "GO:0042843; D-xylose catabolism
GO:0019568; arabinose catabolism
GO:0032866; xylose reductase activity
GO:0032867; arabinose reductase activity" ; gene "SPAC2F3.05c" ; product "xylose and arabinose reductase (predicted)" ;
chromosome1 GeneDB CDS 3928809 3929636 . - . mRNA SPAC2F3.05c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 3929635 3929931 . - . mRNA SPAC2F3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3930586 3931213 . - . mRNA SPAC2F3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.06c" ; systematic_id "SPAC2F3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3931214 3934068 . - . mRNA SPAC2F3.06c ; systematic_id "SPAC2F3.06c" ; colour "2" ; gene "kap104 ||| SPAC2F3.06c" ; Alias "kap104" ; db_xref "SPD:29/29F05" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0031965; nuclear membrane
GO:0008565; protein transporter activity
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YBR017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "kap104" ; product "karyopherin Kap104" ;
chromosome1 GeneDB CDS 3931214 3933838 . - . mRNA SPAC2F3.06c ; colour "2" ;
chromosome1 GeneDB CDS 3933961 3934068 . - . mRNA SPAC2F3.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 3933839 3933853 . - . misc_feature unknown_3331 ; note "ctaactttattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3933955 3933960 . - . misc_feature unknown_3332 ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3934067 3934105 . - . mRNA SPAC2F3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3935322 3936052 . + . mRNA SPAC2F3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3935528 3935833 . - . mRNA SPAC2F3.07c ; db_xref "SPD:01/01E08" ; systematic_id "SPAC2F3.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC2F3.07c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3935528 3935833 . - . mRNA SPAC2F3.07c ; colour "8" ;
chromosome1 GeneDB CDS_parts 3936053 3937780 . + . mRNA SPAC2F3.08 ; systematic_id "SPAC2F3.08" ; colour "2" ; gene "sut1 ||| SPAC2F3.08" ; db_xref "SPD:35/35F11" ; Alias "sut1" ; GO "GO:0015151; alpha-glucoside transporter activity
GO:0015770; sucrose transport
GO:0015768; maltose transport
GO:0005887; integral to plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "sut1" ; product "alpha-glucoside transporter Sut1" ;
chromosome1 GeneDB CDS 3936053 3936530 . + . mRNA SPAC2F3.08 ; colour "2" ;
chromosome1 GeneDB CDS 3936597 3937780 . + . mRNA SPAC2F3.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 3936531 3936536 . + . misc_feature unknown_3333 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3936581 3936596 . + . misc_feature unknown_3334 ; note "ctaactttataactag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3937781 3938074 . + . mRNA SPAC2F3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.08" ; systematic_id "SPAC2F3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3939665 3940262 . + . mRNA SPAC2F3.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F3.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3940026 3940034 . - . misc_feature unknown_3335 ; note "The overlapping cosmid c11G7 has an extra base A at this position. This does not appear it the EMBL entry of c11G7, as c11G7 was cut to a nominal overlap" ;
chromosome1 GeneDB CDS_parts 3940263 3941939 . + . mRNA SPAC2F3.09 ; systematic_id "SPAC2F3.09" ; colour "7" ; gene "SPAC2F3.09 ||| hem1" ; Alias "hem1" ; db_xref "KEGG:MAP00260; ||| SPD:35/35B01" ; GO "GO:0006783; heme biosynthesis
GO:0003870; 5-aminolevulinate synthase activity
GO:0005759; mitochondrial matrix
GO:0008483; transaminase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR232W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hem1" ; product "5-aminolevulinate synthase (predicted)" ; EC_number "2.3.1.37" ; reserved_name "hem1" ;
chromosome1 GeneDB CDS 3940263 3941939 . + . mRNA SPAC2F3.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3941940 3942029 . + . mRNA SPAC2F3.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.09" ; systematic_id "SPAC2F3.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 3942128 3942298 . - . mRNA SPAC2F3.18c ; ID "SPAC2F3.18c" ; db_xref "EMBL:AB084860 ||| SPD:51/51G08" ; systematic_id "SPAC2F3.18c" ; gene "SPAC2F3.18c" ;
chromosome1 GeneDB CDS_parts 3942299 3942730 . - . mRNA SPAC2F3.18c ; db_xref "SPD:51/51G08" ; systematic_id "SPAC2F3.18c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR170W-B; date=20080107 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=human RNASEK ortholog; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; GO "GO:0009303; rRNA transcription
GO:0004521; endoribonuclease activity" ; gene "SPAC2F3.18c" ; product "ribonuclease kappa ortholog (predicted)" ;
chromosome1 GeneDB CDS 3942299 3942364 . - . mRNA SPAC2F3.18c ; colour "7" ;
chromosome1 GeneDB CDS 3942506 3942730 . - . mRNA SPAC2F3.18c ; colour "7" ;
chromosome1 GeneDB CDS_parts 3943194 3946043 . + . mRNA SPAC2F3.10 ; systematic_id "SPAC2F3.10" ; colour "7" ; gene "vps54 ||| SPAC2F3.10" ; Alias "vps54" ; db_xref "SPD:47/47C10" ; GO "GO:0000938; GARP complex
GO:0016192; vesicle-mediated transport
GO:0006896; Golgi to vacuole transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "vps54" ; product "GARP complex subunit Vps54 (predicted)" ;
chromosome1 GeneDB CDS 3943194 3946043 . + . mRNA SPAC2F3.10 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3946044 3946427 . + . mRNA SPAC2F3.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.10" ; systematic_id "SPAC2F3.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3946578 3947774 . + . mRNA SPAC2F3.11 ; db_xref "SPD:19/19B04" ; systematic_id "SPAC2F3.11" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR201C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005829; cytosol
GO:0005759; mitochondrial matrix
GO:0005886; plasma membrane
GO:0004309; exopolyphosphatase activity
GO:0006798; polyphosphate catabolic process" ; gene "SPAC2F3.11" ; product "exopolyphosphatase (predicted)" ; EC_number "3.6.1.11" ;
chromosome1 GeneDB CDS 3946578 3946695 . + . mRNA SPAC2F3.11 ; colour "7" ;
chromosome1 GeneDB CDS 3946738 3947774 . + . mRNA SPAC2F3.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 3946696 3946701 . + . misc_feature unknown_3336 ; note "gtacat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3946721 3946737 . + . misc_feature unknown_3337 ; note "ttaacaattcgtcttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3947912 3947929 . - . mRNA SPAC2F3.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.12c" ; systematic_id "SPAC2F3.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3947930 3948946 . - . mRNA SPAC2F3.12c ; systematic_id "SPAC2F3.12c" ; colour "7" ; gene "SPAC2F3.12c ||| plp1" ; Alias "plp1" ; obsolete_name "SPAC2F3.17c" ; db_xref "SPD:52/52A09" ; GO "GO:0006457; protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR183W; date=19700101 ||| term=human TXNDC9 ortholog; date=20080428 ||| term=thioredoxin family; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=thioredoxin family; date=20090410 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, new gene; date=20020631 ||| term=warning, gene structure updated; date=20020631" ; primary_name "plp1" ; product "thioredoxin fold protein Plp1 (predicted)" ;
chromosome1 GeneDB CDS 3947930 3948241 . - . mRNA SPAC2F3.12c ; colour "7" ;
chromosome1 GeneDB CDS 3948283 3948358 . - . mRNA SPAC2F3.12c ; colour "7" ;
chromosome1 GeneDB CDS 3948407 3948493 . - . mRNA SPAC2F3.12c ; colour "7" ;
chromosome1 GeneDB CDS 3948538 3948690 . - . mRNA SPAC2F3.12c ; colour "7" ;
chromosome1 GeneDB CDS 3948735 3948946 . - . mRNA SPAC2F3.12c ; colour "7" ;
chromosome1 GeneDB misc_feature 3948242 3948254 . - . misc_feature unknown_3338 ; note "ctaacattctcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3948277 3948282 . - . misc_feature unknown_3339 ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3948359 3948373 . - . misc_feature unknown_3340 ; note "ctaattattttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3948401 3948406 . - . misc_feature unknown_3341 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3948494 3948537 . - . intron SPAC2F3.12c ; db_xref "SPD:52/52A09" ; systematic_id "SPAC2F3.12c" ; gene "SPAC2F3.12c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 3948691 3948706 . - . misc_feature unknown_3342 ; note "ctaatgttgacattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3948729 3948734 . - . misc_feature unknown_3343 ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3948945 3949019 . - . mRNA SPAC2F3.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F3.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3949057 3950178 . - . mRNA SPAC2F3.13c ; systematic_id "SPAC2F3.13c" ; colour "7" ; gene "SPAC2F3.13c" ; note "31.06.02 split to create SPAC2F3.13c and SPAC2F3.12c" ; db_xref "SPD:28/28A12" ; GO "GO:0008479; queuine tRNA-ribosyltransferase activity
GO:0008616; queuosine biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "queuine tRNA-ribosyltransferase (predicted)" ; EC_number "2.4.2.29" ;
chromosome1 GeneDB CDS 3949057 3949921 . - . mRNA SPAC2F3.13c ; colour "7" ;
chromosome1 GeneDB CDS 3949997 3950178 . - . mRNA SPAC2F3.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 3949922 3949940 . - . misc_feature unknown_3344 ; note "ctaactaatatgtttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3949991 3949996 . - . misc_feature unknown_3345 ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 3950520 3951515 . - . mRNA SPAC2F3.14c ; systematic_id "SPAC2F3.14c" ; colour "10" ; gene "SPAC2F3.14c" ; db_xref "SPD:14/14E08" ; Alias "saf2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "saf2" ; product "conserved fungal protein" ; reserved_name "saf2" ;
chromosome1 GeneDB CDS 3950520 3951515 . - . mRNA SPAC2F3.14c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 3951514 3951653 . - . mRNA SPAC2F3.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F3.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 3951825 3952600 . + . misc_RNA SPNCRNA.239 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.239" ; synonym "SPNG774" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_RNA 3953281 3953856 . + . misc_RNA SPNCRNA.240 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.240" ; synonym "SPNG776" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 3953802 3954470 . + . mRNA SPAC2F3.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F3.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3954471 3956415 . + . mRNA SPAC2F3.15 ; systematic_id "SPAC2F3.15" ; colour "2" ; gene "lsk1 ||| SPAC2F3.15" ; Alias "lsk1" ; db_xref "SPD:46/46B09" ; GO "GO:0032806; carboxy-terminal domain protein kinase complex
GO:0005634; nucleus
GO:0008024; positive transcription elongation factor complex b
GO:0008353; RNA polymerase II carboxy-terminal domain kinase activity
GO:0004693; cyclin-dependent protein kinase activity
GO:0005634; nucleus
GO:0005515; protein binding
GO:0070816; RNA polymerase II CTD terminal phosphorylation
GO:0008353; RNA polymerase II carboxy-terminal domain kinase activity
GO:0031565; cytokinesis checkpoint
GO:0031566; cytokinesis, contractile ring maintenance
GO:0031566; cytokinesis, contractile ring maintenance
GO:0070816; phosphorlyation of RNA polymerase II C- terminal domain
GO:0031031; positive regulation of septation initiation signaling
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL139W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Latrunculin Sensitive Kinase; cv=name_description; date=20090712 ||| term=phenotype, sensitive to latrunculin A; cv=phenotype; date=20090712 ||| term=target is Rpb1; qualifier=phosphorylates; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Rpb1; db_xref=PMID:17502918; date=20100222" ; primary_name "lsk1" ; product "P-TEFb-associated cyclin-dependent protein kinase Lsk1" ;
chromosome1 GeneDB CDS 3954471 3955418 . + . mRNA SPAC2F3.15 ; colour "2" ;
chromosome1 GeneDB CDS 3955465 3955555 . + . mRNA SPAC2F3.15 ; colour "2" ;
chromosome1 GeneDB CDS 3955622 3956300 . + . mRNA SPAC2F3.15 ; colour "2" ;
chromosome1 GeneDB CDS 3956352 3956415 . + . mRNA SPAC2F3.15 ; colour "2" ;
chromosome1 GeneDB misc_feature 3955419 3955424 . + . misc_feature unknown_3346 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3955453 3955464 . + . misc_feature unknown_3347 ; note "ctaactttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3955556 3955561 . + . misc_feature unknown_3348 ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3955602 3955621 . + . misc_feature unknown_3349 ; note "ctaacattttaaaattctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3956301 3956306 . + . misc_feature unknown_3350 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3956335 3956351 . + . misc_feature unknown_3351 ; note "ctaacttatgtgtttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3956416 3956829 . + . mRNA SPAC2F3.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.15" ; systematic_id "SPAC2F3.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3957103 3957142 . + . mRNA SPAC2F3.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2F3.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3957143 3958606 . + . mRNA SPAC2F3.16 ; db_xref "SPD:44/44G06" ; systematic_id "SPAC2F3.16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=zf-C2H2 type; date=20060726 ||| term=zf-CHY; date=20060726 ||| term=LIM domain; date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAC2F3.16" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB CDS 3957143 3957442 . + . mRNA SPAC2F3.16 ; colour "7" ;
chromosome1 GeneDB CDS 3957512 3957844 . + . mRNA SPAC2F3.16 ; colour "7" ;
chromosome1 GeneDB CDS 3957900 3958004 . + . mRNA SPAC2F3.16 ; colour "7" ;
chromosome1 GeneDB CDS 3958067 3958606 . + . mRNA SPAC2F3.16 ; colour "7" ;
chromosome1 GeneDB misc_feature 3957443 3957448 . + . misc_feature unknown_3352 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3957492 3957511 . + . misc_feature unknown_3353 ; note "ttactaaactggctttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3957845 3957850 . + . misc_feature unknown_3354 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3957881 3957899 . + . misc_feature unknown_3355 ; note "ctaatacatgacttaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3958005 3958010 . + . misc_feature unknown_3356 ; note "gtaact, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3958054 3958066 . + . misc_feature unknown_3357 ; note "ctaacagctgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3958366 3958603 . + . misc_feature unknown_3358 ; colour "8" ; note "CDS completely contained within SPAC2F3.16, unknown" ;
chromosome1 GeneDB misc_feature 3958366 3959809 . + . misc_feature unknown_3359 ; note "nominal overlap with cosmid SPAC2F3 and cosmid SPAC11G7" ;
chromosome1 GeneDB 3'-UTR 3958607 3959297 . + . mRNA SPAC2F3.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2F3.16" ; systematic_id "SPAC2F3.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 3959530 3959668 . + . LTR unknown_3360 ; note "LTR fragment" ;
chromosome1 GeneDB 5'-UTR 3959792 3959897 . + . mRNA SPAC11G7.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11G7.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3959898 3961508 . + . mRNA SPAC11G7.01 ; db_xref "SPD:45/45C12" ; systematic_id "SPAC11G7.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0009986; cell surface" ; gene "SPAC11G7.01" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3959898 3961508 . + . mRNA SPAC11G7.01 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 3961509 3962875 . + . mRNA SPAC11G7.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11G7.01" ; systematic_id "SPAC11G7.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 3963086 3963322 . + . mRNA SPAC11G7.02 ; Alias "pub1" ; ID "SPAC11G7.02" ; db_xref "EMBL:U66716" ; systematic_id "SPAC11G7.02" ; gene "pub1 ||| SPAC11G7.02" ; primary_name "pub1" ;
chromosome1 GeneDB CDS_parts 3963323 3965870 . + . mRNA SPAC11G7.02 ; systematic_id "SPAC11G7.02" ; colour "2" ; gene "pub1 ||| SPAC11G7.02" ; Alias "pub1" ; db_xref "SPD:29/29D01" ; GO "GO:0005737; cytoplasm
GO:0005543; phospholipid binding
GO:0004842; ubiquitin protein ligase activity
GO:0060360; negative regulation of leucine import in response to ammonium ion
GO:0016567; protein ubiquitination
GO:0051726; regulation of cell cycle
GO:0051453; regulation of intracellular pH
GO:0034762; regulation of transmembrane transport
GO:0006511; ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YER125W; date=19700101 ||| term=ubiquitin-protein ligase E3; date=20081104 ||| term=modification, ubiquitinated; db_xref=PMID:8635463; cv=pt_mod; evidence=IDA; date=20081001 ||| term=modification, ubiquitinated; evidence=IDA; db_xref=PMID:20838651; date=20101001 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=Nedd4/Rsp5 family; db_xref=PMID:11956316; date=20081001 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Cdc25; db_xref=PMID:8635463; date=20100823" ; primary_name "pub1" ; product "HECT-type ubiquitin-protein ligase E3 Pub1" ; EC_number "6.3.2.-" ;
chromosome1 GeneDB CDS 3963323 3963339 . + . mRNA SPAC11G7.02 ; colour "2" ;
chromosome1 GeneDB CDS 3963391 3963413 . + . mRNA SPAC11G7.02 ; colour "2" ;
chromosome1 GeneDB CDS 3963465 3963609 . + . mRNA SPAC11G7.02 ; colour "2" ;
chromosome1 GeneDB CDS 3963752 3965870 . + . mRNA SPAC11G7.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 3963340 3963345 . + . misc_feature unknown_3361 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 3963340 3963390 . + . intron SPAC11G7.02 ; Alias "pub1" ; db_xref "EMBL:U66716 ||| SPD:29/29D01" ; systematic_id "SPAC11G7.02" ; gene "pub1 ||| SPAC11G7.02" ; primary_name "pub1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 3963374 3963390 . + . misc_feature unknown_3362 ; colour "6" ; note "ctaacttttatgattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3963414 3963419 . + . misc_feature unknown_3363 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 3963414 3963464 . + . intron SPAC11G7.02 ; Alias "pub1" ; db_xref "EMBL:U66716 ||| SPD:29/29D01" ; systematic_id "SPAC11G7.02" ; gene "pub1 ||| SPAC11G7.02" ; primary_name "pub1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 3963451 3963464 . + . misc_feature unknown_3364 ; colour "6" ; note "ctgacccaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3963610 3963615 . + . misc_feature unknown_3365 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 3963610 3963751 . + . intron SPAC11G7.02 ; Alias "pub1" ; db_xref "EMBL:U66716 ||| SPD:29/29D01" ; systematic_id "SPAC11G7.02" ; gene "pub1 ||| SPAC11G7.02" ; primary_name "pub1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 3963737 3963751 . + . misc_feature unknown_3366 ; colour "6" ; note "ctaacaattctttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3965871 3966180 . + . mRNA SPAC11G7.02 ; Alias "pub1" ; ID "SPAC11G7.02" ; db_xref "EMBL:U66716 ||| SPD:29/29D01" ; systematic_id "SPAC11G7.02" ; gene "pub1 ||| SPAC11G7.02" ; primary_name "pub1" ;
chromosome1 GeneDB 5'-UTR 3966775 3966834 . + . mRNA SPAC11G7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11G7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3966835 3967905 . + . mRNA SPAC11G7.03 ; systematic_id "SPAC11G7.03" ; colour "2" ; gene "idh1 ||| glu3 ||| SPAC11G7.03" ; Alias "idh1" ; db_xref "KEGG:MAP00020; ||| SPD:16/16E04" ; synonym "glu3" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006102; isocitrate metabolism
GO:0006537; glutamate biosynthesis
GO:0004449; isocitrate dehydrogenase (NAD+) activity
GO:0005759; mitochondrial matrix" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL037C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "idh1" ; product "isocitrate dehydrogenase (NAD+) subunit 1 Idh1" ; EC_number "1.1.1.41" ;
chromosome1 GeneDB CDS 3966835 3967905 . + . mRNA SPAC11G7.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 3967906 3968132 . + . mRNA SPAC11G7.03 ; Alias "idh1" ; ID "SPAC11G7.03" ; db_xref "SPD:16/16E04" ; systematic_id "SPAC11G7.03" ; primary_name "idh1" ; gene "idh1 ||| glu3 ||| SPAC11G7.03" ; note "mRNA from AU010927" ;
chromosome1 GeneDB CDS_parts 3969009 3969395 . + . mRNA SPAC11G7.04 ; Alias "ubi1" ; systematic_id "SPAC11G7.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ribosomal-ubiquitin fusion protein; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL148W and YKR094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis and assembly
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; protein biosynthesis
GO:0016567; protein ubiquitination" ; gene "ubi1 ||| SPAC11G7.04" ; primary_name "ubi1" ; product "ribosomal-ubiquitin fusion protein Ubi1 (predicted)" ;
chromosome1 GeneDB CDS 3969009 3969395 . + . mRNA SPAC11G7.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 3969396 3969527 . + . mRNA SPAC11G7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11G7.04" ; systematic_id "SPAC11G7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3969833 3970789 . - . mRNA SPAC11G7.05c ; db_xref "SPD:13/13E07" ; systematic_id "SPAC11G7.05c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR221C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004314; [acyl-carrier-protein] S- malonyltransferase activity
GO:0006631; fatty acid metabolism
GO:0009060; aerobic respiration
GO:0006633; fatty acid biosynthesis" ; gene "SPAC11G7.05c" ; product "mitochondrial [acyl-carrier protein] S- malonyltransferase Mct1 (predicted)" ; EC_number "2.3.1.39" ;
chromosome1 GeneDB CDS 3969833 3970789 . - . mRNA SPAC11G7.05c ; colour "7" ;
chromosome1 GeneDB CDS_parts 3971942 3973234 . - . mRNA SPAC11G7.06c ; systematic_id "SPAC11G7.06c" ; colour "12" ; gene "SPAC11G7.06c ||| mug132" ; db_xref "SPD:22/22D10" ; Alias "mug132" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; primary_name "mug132" ; product "S. pombe specific UPF0300 family protein 3" ;
chromosome1 GeneDB CDS 3971942 3973234 . - . mRNA SPAC11G7.06c ; colour "12" ;
chromosome1 GeneDB misc_feature 3974146 3974250 . + . misc_feature unknown_3367 ; note "nominal overlap with SPAC11G7 S. pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 3974310 3976079 . + . mRNA SPAPB18E9.01 ; Alias "trm5" ; systematic_id "SPAPB18E9.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR070W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030488; tRNA methylation
GO:0016423; tRNA (guanine) methyltransferase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "trm5 ||| SPAPB18E9.01" ; primary_name "trm5" ; product "tRNA (guanine) methyltransferase Trm5 (predicted)" ;
chromosome1 GeneDB CDS 3974310 3974485 . + . mRNA SPAPB18E9.01 ; colour "7" ;
chromosome1 GeneDB CDS 3974541 3974629 . + . mRNA SPAPB18E9.01 ; colour "7" ;
chromosome1 GeneDB CDS 3974674 3974775 . + . mRNA SPAPB18E9.01 ; colour "7" ;
chromosome1 GeneDB CDS 3974879 3975132 . + . mRNA SPAPB18E9.01 ; colour "7" ;
chromosome1 GeneDB CDS 3975193 3975429 . + . mRNA SPAPB18E9.01 ; colour "7" ;
chromosome1 GeneDB CDS 3975485 3975832 . + . mRNA SPAPB18E9.01 ; colour "7" ;
chromosome1 GeneDB CDS 3975882 3975962 . + . mRNA SPAPB18E9.01 ; colour "7" ;
chromosome1 GeneDB CDS 3976014 3976079 . + . mRNA SPAPB18E9.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 3974486 3974491 . + . misc_feature unknown_3368 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3974525 3974540 . + . misc_feature unknown_3369 ; colour "6" ; note "ttaactaaatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3974630 3974635 . + . misc_feature unknown_3370 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3974663 3974673 . + . misc_feature unknown_3371 ; colour "6" ; note "ctaatttcaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3974776 3974781 . + . misc_feature unknown_3372 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3974861 3974878 . + . misc_feature unknown_3373 ; colour "6" ; note "ctaacaacttttacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3975133 3975138 . + . misc_feature unknown_3374 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3975175 3975192 . + . misc_feature unknown_3375 ; colour "6" ; note "ctgatgaatttattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3975430 3975435 . + . misc_feature unknown_3376 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3975469 3975484 . + . misc_feature unknown_3377 ; colour "6" ; note "ctaactagctattaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3975833 3975838 . + . misc_feature unknown_3378 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 3975864 3975881 . + . misc_feature unknown_3379 ; colour "6" ; note "ctaaccaagtttttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 3976352 3976369 . - . mRNA SPAPB18E9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB18E9.02c" ; systematic_id "SPAPB18E9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3976370 3980689 . - . mRNA SPAPB18E9.02c ; Alias "ppk18" ; systematic_id "SPAPB18E9.02c" ; colour "2" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YFL033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "ppk18 ||| SPAPB18E9.02c" ; primary_name "ppk18" ; product "serine/threonine protein kinase Ppk18 (predicted)" ;
chromosome1 GeneDB CDS 3976370 3980189 . - . mRNA SPAPB18E9.02c ; colour "2" ;
chromosome1 GeneDB CDS 3980559 3980689 . - . mRNA SPAPB18E9.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 3980190 3980212 . - . misc_feature unknown_3380 ; colour "6" ; note "ctaaccaagttgcatagaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 3980553 3980558 . - . misc_feature unknown_3381 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 3980688 3980855 . - . mRNA SPAPB18E9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB18E9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 3981978 3982315 . - . misc_feature SPAPB18E9.03c ; systematic_id "SPAPB18E9.03c" ; controlled_curation "term=dubious; date=19700101 ||| term=below 100 amino acid size threshold; date=19700101" ; colour "6" ; gene "SPAPB18E9.03c" ; product "dubious" ; note "not supported by transcript data" ;
chromosome1 GeneDB CDS_parts 3982702 3985104 . - . mRNA SPAPB18E9.04c ; systematic_id "SPAPB18E9.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303" ; GO "GO:0009986; cell surface" ; colour "8" ; gene "SPAPB18E9.04c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3982702 3985104 . - . mRNA SPAPB18E9.04c ; colour "8" ;
chromosome1 GeneDB CDS_parts 3986648 3986920 . - . mRNA SPAPB18E9.05c ; systematic_id "SPAPB18E9.05c" ; controlled_curation "term=warning, below 100 amino acid size threshold; cv=warning; date=19700101" ; colour "6" ; gene "SPAPB18E9.05c" ; product "dubious" ;
chromosome1 GeneDB CDS 3986648 3986920 . - . mRNA SPAPB18E9.05c ; colour "6" ;
chromosome1 GeneDB 3'-UTR 3987033 3987238 . - . mRNA SPAPB15E9.01c ; Alias "SPAPB18E9.06c" ; ID "SPAPB15E9.01c" ; systematic_id "SPAPB15E9.01c" ; primary_name "SPAPB18E9.06c" ; gene "SPAPB18E9.06c ||| SPAPB15E9.01c" ; note "mRNA from AU009814" ;
chromosome1 GeneDB CDS_parts 3987239 3990349 . - . mRNA SPAPB15E9.01c ; systematic_id "SPAPB15E9.01c" ; colour "8" ; gene "SPAPB18E9.06c ||| SPAPB15E9.01c" ; Alias "SPAPB18E9.06c" ; synonym "SPAPB18E9.06c" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "SPAPB18E9.06c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 3987239 3990349 . - . mRNA SPAPB15E9.01c ; colour "8" ;
chromosome1 GeneDB misc_feature 3988119 3988234 . + . misc_feature unknown_3382 ; note "nominal overlap with pB15E9 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 3990348 3991477 . - . mRNA SPAPB15E9.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB15E9.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 3991878 3992444 . - . mRNA SPAPB15E9.02c ; systematic_id "SPAPB15E9.02c" ; colour "6" ; gene "SPAPB15E9.02c" ; product "dubious" ;
chromosome1 GeneDB CDS 3991878 3992444 . - . mRNA SPAPB15E9.02c ; colour "6" ;
chromosome1 GeneDB misc_feature 3993019 3995537 . + . misc_feature unknown_3383 ; note "low complexity gene free region" ;
chromosome1 GeneDB LTR 3995538 3995887 . + . LTR unknown_3384 ; note "Tf1-type LTR" ;
chromosome1 GeneDB misc_feature 3996019 4000691 . - . misc_feature unknown_3385 ; db_xref "SO:0000186" ; note "LTR-retrotransposon ||| needs extending after contiguation" ;
chromosome1 GeneDB LTR 3996024 3996366 . - . LTR unknown_3386 ; note "Tf1-type LTR" ;
chromosome1 GeneDB CDS_parts 3996423 4000424 . - . mRNA SPAPB15E9.03c ; Alias "Tf2-5" ; systematic_id "SPAPB15E9.03c" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "Tf2-5 ||| SPAPB15E9.03c" ; primary_name "Tf2-5" ; product "retrotransposable element" ;
chromosome1 GeneDB CDS 3996423 4000424 . - . mRNA SPAPB15E9.03c ; colour "4" ;
chromosome1 GeneDB misc_feature 4000571 4000691 . - . misc_feature unknown_3387 ; note "nominal overlap with cosmid c27E2" ;
chromosome1 GeneDB LTR 4000591 4000939 . - . LTR unknown_3388 ; note "Tf1-type LTR ||| Tf2-type LTR" ;
chromosome1 GeneDB 5'-UTR 4001704 4001885 . + . mRNA SPAC27E2.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27E2.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4001886 4003514 . + . mRNA SPAC27E2.01 ; db_xref "SPD:26/26A07" ; systematic_id "SPAC27E2.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0009986; cell surface
GO:0004556; alpha-amylase activity
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; gene "SPAC27E2.01" ; product "alpha-amylase homolog (predicted)" ; EC_number "3.2.1.1" ;
chromosome1 GeneDB CDS 4001886 4002860 . + . mRNA SPAC27E2.01 ; colour "7" ;
chromosome1 GeneDB CDS 4002964 4003416 . + . mRNA SPAC27E2.01 ; colour "7" ;
chromosome1 GeneDB CDS 4003467 4003514 . + . mRNA SPAC27E2.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 4002861 4002866 . + . misc_feature unknown_3389 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4002949 4002963 . + . misc_feature unknown_3390 ; colour "6" ; note "ttaacatggttgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4003417 4003422 . + . misc_feature unknown_3391 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4003452 4003466 . + . misc_feature unknown_3392 ; colour "6" ; note "ctaatgttaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4003515 4004069 . + . mRNA SPAC27E2.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27E2.01" ; systematic_id "SPAC27E2.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4004286 4004506 . + . mRNA SPAC27E2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27E2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4004507 4005508 . + . mRNA SPAC27E2.02 ; db_xref "SPD:14/14F12" ; systematic_id "SPAC27E2.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RWD domain; date=19700101 ||| term=orthologous to S. cerevisiae YCR059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human IMPACT ortholog; date=20100226" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0045182; translation regulator activity
GO:0001932; regulation of protein amino acid phosphorylation
GO:0043555; regulation of translation in response to stress" ; gene "SPAC27E2.02" ; product "IMPACT homolog, translational regulator (predicted)" ;
chromosome1 GeneDB CDS 4004507 4005061 . + . mRNA SPAC27E2.02 ; colour "7" ;
chromosome1 GeneDB CDS 4005154 4005273 . + . mRNA SPAC27E2.02 ; colour "7" ;
chromosome1 GeneDB CDS 4005341 4005508 . + . mRNA SPAC27E2.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 4005062 4005067 . + . misc_feature unknown_3393 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4005143 4005153 . + . misc_feature unknown_3394 ; colour "6" ; note "ctaacgcatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4005274 4005279 . + . misc_feature unknown_3395 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4005322 4005340 . + . misc_feature unknown_3396 ; colour "6" ; note "ctaacttgctatttctcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4005828 4005849 . - . mRNA SPAC27E2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27E2.03c" ; systematic_id "SPAC27E2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4005850 4007028 . - . mRNA SPAC27E2.03c ; db_xref "SPD:18/18F11" ; systematic_id "SPAC27E2.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=orthologous to S. cerevisiae YBR025C and YHL014C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005525; GTP binding" ; gene "SPAC27E2.03c" ; product "GTP binding protein (predicted)" ;
chromosome1 GeneDB CDS 4005850 4007028 . - . mRNA SPAC27E2.03c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4007027 4007096 . - . mRNA SPAC27E2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27E2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4007307 4007744 . + . misc_feature unknown_3397 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG784 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_RNA 4008054 4009905 . - . misc_RNA SPNCRNA.53 ; systematic_id "SPNCRNA.53" ; note "covered by abundant ESTs; prl53 prl63 and prl49 all map to within this highly transcribed region (PMID 12597277)" ; db_xref "PMID:12597277 ||| EMBL:AB084865 ||| EMBL:AB084875 ||| EMBL:AB084861" ; obsolete_name "SPNCRNA.49" ; Alias "prl53" ; synonym "prl63 ||| prl49 ||| SPNCRNA.63" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl53" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome1 GeneDB CDS_parts 4008511 4008693 . + . mRNA SPAC27E2.13 ; systematic_id "SPAC27E2.13" ; controlled_curation "term=warning, longest ORF in feature; cv=warning; date=20060721" ; colour "6" ; gene "SPAC27E2.13" ; product "dubious" ;
chromosome1 GeneDB CDS 4008511 4008693 . + . mRNA SPAC27E2.13 ; colour "6" ;
chromosome1 GeneDB CDS_parts 4009573 4009818 . - . mRNA SPAC27E2.11c ; db_xref "SPD:01/01B09" ; systematic_id "SPAC27E2.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; colour "8" ; GO "GO:0009986; cell surface" ; gene "SPAC27E2.11c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4009573 4009818 . - . mRNA SPAC27E2.11c ; colour "8" ;
chromosome1 GeneDB CDS_parts 4010686 4011249 . - . mRNA SPAC27E2.04c ; Alias "mug155" ; db_xref "SPD:05/05H08" ; systematic_id "SPAC27E2.04c" ; colour "6" ; gene "SPAC27E2.04c ||| mug155" ; primary_name "mug155" ; product "dubious" ;
chromosome1 GeneDB CDS 4010686 4011249 . - . mRNA SPAC27E2.04c ; colour "6" ;
chromosome1 GeneDB CDS_parts 4010913 4011317 . + . mRNA SPAC27E2.12 ; db_xref "SPD:52/52E08" ; systematic_id "SPAC27E2.12" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=warning, previously annotated as dubious; date=20100606" ; colour "8" ; gene "SPAC27E2.12" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4010913 4010930 . + . mRNA SPAC27E2.12 ; colour "8" ;
chromosome1 GeneDB CDS 4011105 4011317 . + . mRNA SPAC27E2.12 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 4012418 4012521 . - . mRNA SPAC27E2.14 ; ID "SPAC27E2.14" ; systematic_id "SPAC27E2.14" ; gene "SPAC27E2.14" ; note "corresponds to mRNA from spc06944 but no associated ORF ||| strand altered 19.06.2003, evidence from microarray profile (pers comm. Jurg Bahler)" ;
chromosome1 GeneDB CDS_parts 4012522 4012677 . - . mRNA SPAC27E2.14 ; db_xref "PMID:18488015" ; systematic_id "SPAC27E2.14" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC27E2.14" ; product "sequence orphan" ; note "intron from Solexa transread data" ;
chromosome1 GeneDB CDS 4012522 4012611 . - . mRNA SPAC27E2.14 ; colour "8" ;
chromosome1 GeneDB CDS 4012663 4012677 . - . mRNA SPAC27E2.14 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 4012678 4012891 . - . mRNA SPAC27E2.14 ; ID "SPAC27E2.14" ; systematic_id "SPAC27E2.14" ; gene "SPAC27E2.14" ; note "corresponds to mRNA from spc06944 but no associated ORF ||| strand altered 19.06.2003, evidence from microarray profile (pers comm. Jurg Bahler)" ;
chromosome1 GeneDB 5'-UTR 4015037 4015049 . + . mRNA SPAC27E2.05 ; Alias "cdc1" ; ID "SPAC27E2.05" ; systematic_id "SPAC27E2.05" ; primary_name "cdc1" ; gene "cdc1 ||| mis1 ||| SPAC27E2.05" ; note "mRNA from SPCDC1PRT; possible fragment?" ;
chromosome1 GeneDB CDS_parts 4015050 4016487 . + . mRNA SPAC27E2.05 ; systematic_id "SPAC27E2.05" ; colour "2" ; gene "cdc1 ||| mis1 ||| SPAC27E2.05" ; Alias "cdc1" ; db_xref "SPD:23/23B11" ; synonym "mis1" ; controlled_curation "term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:958201; qualifier=ts; date=20100705 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:8887553; date=20100630 ||| term=orthologous to S. cerevisiae YJR006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0043625; delta DNA polymerase complex
GO:0006271; DNA strand elongation
GO:0000731; DNA synthesis during DNA repair
GO:0003887; DNA-directed DNA polymerase activity
GO:0043596; nuclear replication fork
GO:0008408; 3'-5' exonuclease activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000723; telomere maintenance
GO:0043137; DNA replication, removal of RNA primer
GO:0005515; protein binding
GO:0007346; regulation of mitotic cell cycle" ; primary_name "cdc1" ; product "DNA polymerase delta small subunit Cdc1" ; EC_number "2.7.7.7" ;
chromosome1 GeneDB CDS 4015050 4016190 . + . mRNA SPAC27E2.05 ; colour "2" ;
chromosome1 GeneDB CDS 4016240 4016487 . + . mRNA SPAC27E2.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 4016191 4016196 . + . misc_feature unknown_3398 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4016191 4016239 . + . intron SPAC27E2.05 ; Alias "cdc1" ; db_xref "SPD:23/23B11" ; systematic_id "SPAC27E2.05" ; primary_name "cdc1" ; gene "cdc1 ||| mis1 ||| SPAC27E2.05" ; note "Intron confirmed by EST" ;
chromosome1 GeneDB misc_feature 4016227 4016239 . + . misc_feature unknown_3399 ; colour "6" ; note "ctaatgattttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4016488 4016557 . + . mRNA SPAC27E2.05 ; Alias "cdc1" ; ID "SPAC27E2.05" ; db_xref "SPD:23/23B11" ; systematic_id "SPAC27E2.05" ; primary_name "cdc1" ; gene "cdc1 ||| mis1 ||| SPAC27E2.05" ; note "mRNA from AU006811" ;
chromosome1 GeneDB CDS_parts 4016578 4018197 . - . mRNA SPAC27E2.06c ; db_xref "KEGG:MAP00271; ||| KEGG:MAP00450; ||| KEGG:MAP00970; ||| SPD:25/25H08" ; systematic_id "SPAC27E2.06c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR171C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004825; methionine-tRNA ligase activity
GO:0006431; methionyl-tRNA aminoacylation" ; gene "SPAC27E2.06c" ; product "mitochondrial methionine-tRNA ligase (predicted)" ; EC_number "6.1.1.10" ;
chromosome1 GeneDB CDS 4016578 4018197 . - . mRNA SPAC27E2.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4018196 4018371 . - . mRNA SPAC27E2.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27E2.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4019912 4020081 . + . mRNA SPAC27E2.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27E2.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4020082 4021251 . + . mRNA SPAC27E2.07 ; systematic_id "SPAC27E2.07" ; colour "2" ; gene "pvg2 ||| SPAC27E2.07 ||| mug53" ; Alias "pvg2" ; db_xref "SPD:18/18E06" ; synonym "mug53" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0051286; cell tip
cell wall biosynthesis (sensu Fungi); GO:0009272; GO:0009272
GO:0051072; 4,6-pyruvylated galactose residue biosynthesis
GO:0009986; cell surface
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "pvg2" ; product "galactose residue biosynthesis protein Pvg2" ;
chromosome1 GeneDB CDS 4020082 4021251 . + . mRNA SPAC27E2.07 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4021252 4021558 . + . mRNA SPAC27E2.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27E2.07" ; systematic_id "SPAC27E2.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4021972 4026897 . + . misc_feature unknown_3400 ; db_xref "SO:0000186" ; note "LTR-retrotransposon" ;
chromosome1 GeneDB LTR 4021977 4022325 . + . LTR unknown_3401 ; note "Tf2-type Ltr" ;
chromosome1 GeneDB CDS_parts 4022492 4026493 . + . mRNA SPAC27E2.08 ; Alias "Tf2-6" ; systematic_id "SPAC27E2.08" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "Tf2-6 ||| SPAC27E2.08" ; primary_name "Tf2-6" ; product "retrotransposable element" ;
chromosome1 GeneDB CDS 4022492 4026493 . + . mRNA SPAC27E2.08 ; colour "4" ;
chromosome1 GeneDB LTR 4026544 4026892 . + . LTR unknown_3402 ; note "tf2-type ltr" ;
chromosome1 GeneDB 5'-UTR 4027058 4027113 . + . mRNA SPAC27E2.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27E2.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4027114 4034046 . + . mRNA SPAC27E2.09 ; systematic_id "SPAC27E2.09" ; colour "2" ; gene "mak2 ||| phk1 ||| SPAC27E2.09" ; Alias "mak2" ; db_xref "SPD:34/34C08" ; synonym "phk1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11758939; date=19700101 ||| term=PAC domain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Sty1; qualifier=phosphorylates; db_xref=PMID:17072883; date=20100820" ; GO "GO:0005737; cytoplasm
GO:0004673; protein histidine kinase activity
GO:0000155; two-component sensor activity
GO:0006468; protein amino acid phosphorylation
GO:0031137; regulation of conjugation with cellular fusion
GO:0007346; regulation of progression through mitotic cell cycle
GO:0034599; cellular response to oxidative stress
GO:0031098; stress-activated protein kinase signaling pathway
GO:0000160; two-component signal transduction system (phosphorelay)" ; primary_name "mak2" ; product "histidine kinase Mak2" ;
chromosome1 GeneDB CDS 4027114 4034046 . + . mRNA SPAC27E2.09 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4034149 4034286 . - . mRNA SPAC27E2.10c ; Alias "rfc3" ; ID "SPAC27E2.10c" ; db_xref "SPD:39/39E11 ||| EMBL:AB017040" ; systematic_id "SPAC27E2.10c" ; primary_name "rfc3" ; gene "rfc3 ||| SPAC27E2.10c ||| SPAPJ698.01c" ;
chromosome1 GeneDB CDS_parts 4034287 4035782 . - . mRNA SPAC27E2.10c ; systematic_id "SPAC27E2.10c" ; colour "2" ; gene "rfc3 ||| SPAC27E2.10c ||| SPAPJ698.01c" ; Alias "rfc3" ; db_xref "SPD:39/39E11" ; synonym "SPAPJ698.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YNL290W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005663; DNA replication factor C complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0000077; DNA damage checkpoint
GO:0006261; DNA replication
GO:0031390; Ctf18 RFC-like complex
GO:0031391; Elg1 RFC-like complex
GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0003689; DNA clamp loader activity
GO:0043596; nuclear relication fork" ; primary_name "rfc3" ; product "DNA replication factor C complex subunit Rfc3" ;
chromosome1 GeneDB CDS 4034287 4034516 . - . mRNA SPAC27E2.10c ; colour "2" ;
chromosome1 GeneDB CDS 4034578 4034949 . - . mRNA SPAC27E2.10c ; colour "2" ;
chromosome1 GeneDB CDS 4035091 4035164 . - . mRNA SPAC27E2.10c ; colour "2" ;
chromosome1 GeneDB CDS 4035216 4035429 . - . mRNA SPAC27E2.10c ; colour "2" ;
chromosome1 GeneDB CDS 4035479 4035543 . - . mRNA SPAC27E2.10c ; colour "2" ;
chromosome1 GeneDB CDS 4035709 4035782 . - . mRNA SPAC27E2.10c ; colour "2" ;
chromosome1 GeneDB misc_feature 4034517 4034535 . - . misc_feature unknown_3403 ; colour "6" ; note "ctaactttgtttattacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4034517 4034577 . - . intron SPAC27E2.10c ; Alias "rfc3" ; db_xref "SPD:39/39E11" ; systematic_id "SPAC27E2.10c" ; primary_name "rfc3" ; gene "rfc3 ||| SPAC27E2.10c ||| SPAPJ698.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4034572 4034577 . - . misc_feature unknown_3404 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4034950 4034968 . - . misc_feature unknown_3405 ; colour "6" ; note "ctaaccagttactaatcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4034950 4035090 . - . intron SPAC27E2.10c ; Alias "rfc3" ; db_xref "SPD:39/39E11" ; systematic_id "SPAC27E2.10c" ; primary_name "rfc3" ; gene "rfc3 ||| SPAC27E2.10c ||| SPAPJ698.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4035085 4035090 . - . misc_feature unknown_3406 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4035092 4035165 . + . misc_feature unknown_3407 ; note "nominal overlap with cosmid SPAC27E2 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 4035165 4035165 . - . misc_feature unknown_3408 ; note "splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4035165 4035176 . - . misc_feature unknown_3409 ; colour "6" ; note "ctaacaatttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4035165 4035215 . - . intron SPAC27E2.10c ; Alias "rfc3" ; db_xref "SPD:39/39E11" ; systematic_id "SPAC27E2.10c" ; primary_name "rfc3" ; gene "rfc3 ||| SPAC27E2.10c ||| SPAPJ698.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4035210 4035215 . - . misc_feature unknown_3410 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4035430 4035446 . - . misc_feature unknown_3411 ; colour "6" ; note "ctaatcaaataaataag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4035430 4035478 . - . intron SPAC27E2.10c ; Alias "rfc3" ; db_xref "SPD:39/39E11" ; systematic_id "SPAC27E2.10c" ; primary_name "rfc3" ; gene "rfc3 ||| SPAC27E2.10c ||| SPAPJ698.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4035473 4035478 . - . misc_feature unknown_3412 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4035544 4035554 . - . misc_feature unknown_3413 ; colour "6" ; note "ttaacatttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4035544 4035708 . - . intron SPAC27E2.10c ; Alias "rfc3" ; db_xref "SPD:39/39E11" ; systematic_id "SPAC27E2.10c" ; primary_name "rfc3" ; gene "rfc3 ||| SPAC27E2.10c ||| SPAPJ698.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4035703 4035708 . - . misc_feature unknown_3414 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4035781 4035805 . - . mRNA SPAC27E2.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27E2.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4036533 4036722 . - . mRNA SPAPJ698.02c ; Alias "rps002" ; ID "SPAPJ698.02c" ; systematic_id "SPAPJ698.02c" ; primary_name "rps002" ; gene "rps002 ||| rpsa-2 ||| rps0-2 ||| rps0 ||| SPAPJ698.02c" ; note "mRNA from AU007799" ;
chromosome1 GeneDB CDS_parts 4036723 4037586 . - . mRNA SPAPJ698.02c ; systematic_id "SPAPJ698.02c" ; colour "2" ; gene "rps002 ||| rpsa-2 ||| rps0-2 ||| rps0 ||| SPAPJ698.02c" ; Alias "rps002" ; synonym "rpsa-2 ||| rps0-2 ||| rps0" ; GO "GO:0015935; small ribosomal subunit
GO:0005515; protein binding
GO:0042274; ribosomal small subunit biogenesis
GO:0006412; translation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14623272; date=19700101 ||| term=orthologous to S. cerevisiae YGR214W and YLR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps002" ; product "40S ribosomal protein S0B" ;
chromosome1 GeneDB CDS 4036723 4037586 . - . mRNA SPAPJ698.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4037585 4037620 . - . mRNA SPAPJ698.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPJ698.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4037950 4038143 . - . mRNA SPAPJ698.03c ; Alias "prp12" ; ID "SPAPJ698.03c" ; systematic_id "SPAPJ698.03c" ; primary_name "prp12" ; gene "prp12 ||| sap130 ||| SPAPJ698.03c" ; note "mRNA from AU013496" ;
chromosome1 GeneDB CDS_parts 4038144 4041764 . - . mRNA SPAPJ698.03c ; systematic_id "SPAPJ698.03c" ; colour "2" ; gene "prp12 ||| sap130 ||| SPAPJ698.03c" ; Alias "prp12" ; synonym "sap130" ; GO "GO:0030620; U2 snRNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000245; spliceosome assembly
GO:0005686; snRNP U2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:11350031; date=20100705 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:9003295; date=20100705 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YML049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "prp12" ; product "U2 snRNP-associated protein Sap130 (predicted)" ;
chromosome1 GeneDB CDS 4038144 4041764 . - . mRNA SPAPJ698.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4041763 4041795 . - . mRNA SPAPJ698.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPJ698.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4042034 4044419 . - . mRNA SPAC19G12.01c ; systematic_id "SPAC19G12.01c" ; colour "2" ; gene "cut20 ||| lid1 ||| SPAPJ698.04c ||| SPAC19G12.01c ||| apc4" ; Alias "cut20" ; db_xref "SPD:46/46H03" ; synonym "lid1 ||| apc4 ||| SPAPJ698.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; allele=lid1-26; db_xref=PMID:10082519; date=20100727 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005680; anaphase-promoting complex
GO:0005515; protein binding
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0016567; protein ubiquitination
GO:0030071; regulation of mitotic metaphase/anaphase transition" ; primary_name "cut20" ; product "anaphase-promoting complex subunit Apc4" ;
chromosome1 GeneDB CDS 4042034 4043554 . - . mRNA SPAC19G12.01c ; colour "2" ;
chromosome1 GeneDB CDS 4043600 4043657 . - . mRNA SPAC19G12.01c ; colour "2" ;
chromosome1 GeneDB CDS 4043749 4043871 . - . mRNA SPAC19G12.01c ; colour "2" ;
chromosome1 GeneDB CDS 4043914 4044133 . - . mRNA SPAC19G12.01c ; colour "2" ;
chromosome1 GeneDB CDS 4044182 4044419 . - . mRNA SPAC19G12.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 4042732 4042834 . + . misc_feature unknown_3415 ; note "nominal overlap with PCR product SPAPJ698 and cosmid SPAC19G12" ;
chromosome1 GeneDB 5'-UTR 4044418 4044600 . - . mRNA SPAC19G12.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4044881 4044899 . - . mRNA SPAC19G12.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19G12.02c" ; systematic_id "SPAC19G12.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4044900 4047498 . - . mRNA SPAC19G12.02c ; systematic_id "SPAC19G12.02c" ; colour "2" ; gene "pms1 ||| SPAC19G12.02c" ; Alias "pms1" ; db_xref "SPD:38/38E10" ; GO "GO:0000228; nuclear chromosome
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0003677; DNA binding
GO:0030983; mismatched DNA binding
GO:0043570; maintenance of DNA repeat elements
GO:0006298; mismatch repair
GO:0006298; mismatch repair
GO:0006298; mismatch repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL082W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human PMS1 and PMS2 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; primary_name "pms1" ; product "MutL family mismatch-repair protein Pms1" ;
chromosome1 GeneDB CDS 4044900 4045135 . - . mRNA SPAC19G12.02c ; colour "2" ;
chromosome1 GeneDB CDS 4045177 4046433 . - . mRNA SPAC19G12.02c ; colour "2" ;
chromosome1 GeneDB CDS 4046505 4046970 . - . mRNA SPAC19G12.02c ; colour "2" ;
chromosome1 GeneDB CDS 4047073 4047498 . - . mRNA SPAC19G12.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 4045136 4045148 . - . misc_feature unknown_3416 ; colour "6" ; note "ttaacttctgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4045171 4045176 . - . misc_feature unknown_3417 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4046434 4046450 . - . misc_feature unknown_3418 ; colour "6" ; note "ctaaccaattattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4046499 4046504 . - . misc_feature unknown_3419 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4046971 4046984 . - . misc_feature unknown_3420 ; colour "6" ; note "ctaactgaatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4047067 4047072 . - . misc_feature unknown_3421 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4047633 4048140 . + . mRNA SPAC19G12.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4048141 4049103 . + . mRNA SPAC19G12.03 ; systematic_id "SPAC19G12.03" ; colour "2" ; gene "cda1 ||| SPAC19G12.03" ; Alias "cda1" ; db_xref "SPD:13/13F08" ; GO "GO:0005631; chitosan layer of spore wall
GO:0005619; spore wall (sensu Fungi)
GO:0004099; chitin deacetylase activity
GO:0034232; spore wall chitin catabolic process
GO:0030476; spore wall assembly (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR307W and YLR308W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "cda1" ; product "chitin deacetylase Cda1" ; EC_number "3.5.1.41" ;
chromosome1 GeneDB CDS 4048141 4049103 . + . mRNA SPAC19G12.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4049104 4049222 . + . mRNA SPAC19G12.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19G12.03" ; systematic_id "SPAC19G12.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4049553 4049618 . + . mRNA SPAC19G12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4049619 4050194 . + . mRNA SPAC19G12.04 ; db_xref "SPD:06/06B09" ; systematic_id "SPAC19G12.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR032C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000256; allantoin catabolism
GO:0004848; ureidoglycolate hydrolase activity
GO:0006145; purine base catabolism" ; gene "SPAC19G12.04" ; product "ureidoglycolate hydrolase (predicted)" ; EC_number "3.5.3.19" ;
chromosome1 GeneDB CDS 4049619 4050194 . + . mRNA SPAC19G12.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4050195 4050433 . + . mRNA SPAC19G12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19G12.04" ; systematic_id "SPAC19G12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4050929 4051127 . + . mRNA SPAC19G12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4051128 4052003 . + . mRNA SPAC19G12.05 ; db_xref "SPD:11/11H03" ; systematic_id "SPAC19G12.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR291C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=19700101" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006843; mitochondrial citrate transport
GO:0005371; tricarboxylate carrier activity" ; gene "SPAC19G12.05" ; product "mitochondrial citrate transporter (predicted)" ;
chromosome1 GeneDB CDS 4051128 4052003 . + . mRNA SPAC19G12.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4052004 4052357 . + . mRNA SPAC19G12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19G12.05" ; systematic_id "SPAC19G12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4052446 4052851 . - . mRNA SPAC19G12.06c ; Alias "hta2" ; ID "SPAC19G12.06c" ; db_xref "SPD:31/31D04" ; systematic_id "SPAC19G12.06c" ; primary_name "hta2" ; gene "hta2 ||| SPAC19G12.06c" ; note "mRNA from spc00233 1 393" ;
chromosome1 GeneDB CDS_parts 4052852 4053247 . - . mRNA SPAC19G12.06c ; systematic_id "SPAC19G12.06c" ; colour "2" ; gene "hta2 ||| SPAC19G12.06c" ; Alias "hta2" ; db_xref "SPD:31/31D04" ; GO "GO:0042770; DNA damage response, signal transduction
GO:0006975; DNA damage induced protein phosphorylation
GO:0034501; protein localization to kinetochore
GO:0034501; protein localization to kinetochore" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBL003C and YDR225W; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=in_response_to_DNA_damage; residue=S129; annotation_extension=dependent_on(GeneDB_Spombe:SPBC216. 05)|dependent_on(GeneDB_Spombe:SPCC23B6.03c); db_xref=PMID:15226425; date=20080104 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target of Bub1; qualifier=phosphorylated_by; db_xref=PMID:19965387; date=20101116" ; primary_name "hta2" ; product "histone H2A beta" ;
chromosome1 GeneDB CDS 4052852 4053247 . - . mRNA SPAC19G12.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4053246 4053293 . - . mRNA SPAC19G12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4053681 4053809 . - . mRNA SPAC19G12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19G12.07c" ; systematic_id "SPAC19G12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4053810 4056017 . - . mRNA SPAC19G12.07c ; systematic_id "SPAC19G12.07c" ; colour "7" ; gene "rsd1 ||| SPAC19G12.07c" ; db_xref "SPD:46/46F08" ; Alias "rsd1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=human RBM39 ortholog; date=20080624 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "rsd1" ; product "RNA-binding protein Rsd1 (predicted)" ;
chromosome1 GeneDB CDS 4053810 4054068 . - . mRNA SPAC19G12.07c ; colour "7" ;
chromosome1 GeneDB CDS 4054110 4054187 . - . mRNA SPAC19G12.07c ; colour "7" ;
chromosome1 GeneDB CDS 4054234 4054554 . - . mRNA SPAC19G12.07c ; colour "7" ;
chromosome1 GeneDB CDS 4054627 4054800 . - . mRNA SPAC19G12.07c ; colour "7" ;
chromosome1 GeneDB CDS 4054848 4054985 . - . mRNA SPAC19G12.07c ; colour "7" ;
chromosome1 GeneDB CDS 4055082 4055872 . - . mRNA SPAC19G12.07c ; colour "7" ;
chromosome1 GeneDB CDS 4055964 4056017 . - . mRNA SPAC19G12.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 4054069 4054081 . - . misc_feature unknown_3422 ; colour "6" ; note "ctaacctttaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4054104 4054109 . - . misc_feature unknown_3423 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4054188 4054198 . - . misc_feature unknown_3424 ; colour "6" ; note "ctaacataaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4054228 4054233 . - . misc_feature unknown_3425 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4054555 4054573 . - . misc_feature unknown_3426 ; colour "6" ; note "ctaacattatattttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4054621 4054626 . - . misc_feature unknown_3427 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4054801 4054815 . - . misc_feature unknown_3428 ; colour "6" ; note "ctaacttatttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4054842 4054847 . - . misc_feature unknown_3429 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4054986 4055003 . - . misc_feature unknown_3430 ; colour "6" ; note "ctaacgaatataatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4055076 4055081 . - . misc_feature unknown_3431 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4055873 4055888 . - . misc_feature unknown_3432 ; colour "6" ; note "ctaacccttttcctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4055958 4055963 . - . misc_feature unknown_3433 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4056794 4056957 . + . mRNA SPAC19G12.08 ; ID "SPAC19G12.08" ; systematic_id "SPAC19G12.08" ; gene "SPAC19G12.08" ; note "mRNA from spc10699 1 222" ;
chromosome1 GeneDB CDS_parts 4056958 4058289 . + . mRNA SPAC19G12.08 ; systematic_id "SPAC19G12.08" ; colour "2" ; gene "SPAC19G12.08" ; Alias "scs7" ; db_xref "SPD:20/20F03" ; GO "GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane
GO:0000170; sphingosine hydroxylase activity
GO:0006675; mannose inositol phosphoceramide metabolic process" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR272C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "scs7" ; product "sphingosine hydroxylase Scs7" ;
chromosome1 GeneDB CDS 4056958 4057015 . + . mRNA SPAC19G12.08 ; colour "2" ;
chromosome1 GeneDB CDS 4057304 4058289 . + . mRNA SPAC19G12.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 4057016 4057021 . + . misc_feature unknown_3434 ; colour "6" ; note "gtaagt, splice branch and acceptor" ;
chromosome1 GeneDB intron 4057016 4057303 . + . intron SPAC19G12.08 ; db_xref "SPD:20/20F03" ; systematic_id "SPAC19G12.08" ; gene "SPAC19G12.08" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4057289 4057303 . + . misc_feature unknown_3435 ; colour "6" ; note "ctaacattccattag, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 4058290 4058798 . + . mRNA SPAC19G12.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19G12.08" ; systematic_id "SPAC19G12.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 4059028 4059106 . - . tRNA SPATRNALEU.04 ; systematic_id "SPATRNALEU.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033444; AAG codon-amino acid adaptor activity" ; product "tRNA Leucine" ; note "tRNA Leu anticodon AAG, Cove score 59.59" ;
chromosome1 GeneDB 5'-UTR 4060060 4060251 . + . mRNA SPAC19G12.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4060252 4061106 . + . mRNA SPAC19G12.09 ; db_xref "SPD:11/11C05" ; systematic_id "SPAC19G12.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL124W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "2" ; GO "GO:0047018; indole-3-acetaldehyde reductase (NADH) activity
GO:0047019; indole-3-acetaldehyde reductase (NADPH) activity
GO:0051268; alpha-keto amide reductase activity
GO:0051269; alpha-keto ester reductase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016652; oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor" ; gene "SPAC19G12.09" ; product "NADH/NADPH dependent indole-3-acetaldehyde reductase AKR3C2" ;
chromosome1 GeneDB CDS 4060252 4061106 . + . mRNA SPAC19G12.09 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4061107 4061192 . + . mRNA SPAC19G12.09 ; ID "SPAC19G12.09" ; db_xref "SPD:11/11C05" ; systematic_id "SPAC19G12.09" ; gene "SPAC19G12.09" ; note "mRNA from AU009204 1 137" ;
chromosome1 GeneDB 3'-UTR 4061377 4061509 . - . mRNA SPAC19G12.10c ; Alias "cpy1" ; ID "SPAC19G12.10c" ; db_xref "SPD:29/29G12" ; systematic_id "SPAC19G12.10c" ; primary_name "cpy1" ; gene "cpy1 ||| pcy1 ||| SPAC19G12.10c" ; note "mRNA from spc11281 231 187" ;
chromosome1 GeneDB CDS_parts 4061510 4064518 . - . mRNA SPAC19G12.10c ; systematic_id "SPAC19G12.10c" ; colour "2" ; gene "cpy1 ||| pcy1 ||| SPAC19G12.10c" ; Alias "cpy1" ; db_xref "SPD:29/29G12" ; synonym "pcy1" ; GO "GO:0005737; cytoplasm
GO:0000324; vacuole (sensu Fungi)
GO:0046982; protein heterodimerization activity
GO:0004185; serine carboxypeptidase activity
GO:0007039; vacuolar protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, galactosialidosis; date=20060920 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=modification, glycosylated; cv=pt_mod; db_xref=PMID:9209031; date=19700101 ||| term=protein sequence feature, vacuolar sorting signal; db_xref=PMID:9209031; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR297W and YBR139W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "cpy1" ; product "vacuolar carboxypeptidase Y" ; EC_number "3.4.16.5" ;
chromosome1 GeneDB CDS 4061510 4064518 . - . mRNA SPAC19G12.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4064517 4064952 . - . mRNA SPAC19G12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4065984 4066257 . - . mRNA SPAC19G12.17 ; db_xref "PMID:21270388" ; systematic_id "SPAC19G12.17" ;
chromosome1 GeneDB CDS_parts 4066258 4066940 . - . mRNA SPAC19G12.17 ; Alias "new10" ; systematic_id "SPAC19G12.17" ; controlled_curation "term=conserved in Fungi; date=20100420 ||| term=conserved in Eukaryotes only; date=20100420 ||| term=conserved in Eukaryotes; date=20100420 ||| term=conserved in Vertebrates; date=20100420 ||| term=conserved in Metazoa; date=20100420 ||| term=conserved in Fungi; date=20100420 ||| term=no apparent S. cerevisiae ortholog; date=20100420 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "10" ; primary_name "new10" ; product "enhancer of rudimentary homolog" ;
chromosome1 GeneDB CDS 4066258 4066328 . - . mRNA SPAC19G12.17 ; colour "10" ;
chromosome1 GeneDB CDS 4066387 4066491 . - . mRNA SPAC19G12.17 ; colour "10" ;
chromosome1 GeneDB CDS 4066623 4066652 . - . mRNA SPAC19G12.17 ; colour "10" ;
chromosome1 GeneDB CDS 4066728 4066785 . - . mRNA SPAC19G12.17 ; colour "10" ;
chromosome1 GeneDB CDS 4066837 4066858 . - . mRNA SPAC19G12.17 ; colour "10" ;
chromosome1 GeneDB CDS 4066903 4066940 . - . mRNA SPAC19G12.17 ; colour "10" ;
chromosome1 GeneDB intron 4066329 4066386 . - . intron unknown_3436 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome1 GeneDB intron 4066492 4066622 . - . intron unknown_3437 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome1 GeneDB intron 4066653 4066727 . - . intron unknown_3438 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome1 GeneDB intron 4066786 4066836 . - . intron unknown_3439 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome1 GeneDB 5'-UTR 4066941 4067151 . - . mRNA SPAC19G12.17 ; db_xref "PMID:21270388" ; systematic_id "SPAC19G12.17" ;
chromosome1 GeneDB 5'-UTR 4067208 4067433 . + . mRNA SPAC19G12.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4067434 4068186 . + . mRNA SPAC19G12.11 ; systematic_id "SPAC19G12.11" ; colour "7" ; gene "SPAC19G12.11 ||| coq9" ; Alias "coq9" ; db_xref "SPD:43/43B03" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006744; ubiquinone biosynthesis
GO:0009060; aerobic respiration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR201C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, coenzyme Q deficiency; date=20090423" ; primary_name "coq9" ; product "ubiquinone biosynthesis protein Coq9 (predicted)" ;
chromosome1 GeneDB CDS 4067434 4068186 . + . mRNA SPAC19G12.11 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4068187 4068258 . + . mRNA SPAC19G12.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19G12.11" ; systematic_id "SPAC19G12.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4068636 4068755 . + . mRNA SPAC19G12.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4068756 4069640 . + . mRNA SPAC19G12.12 ; systematic_id "SPAC19G12.12" ; colour "2" ; gene "dlp1 ||| SPAC19G12.12" ; Alias "dlp1" ; obsolete_name "coq1" ; db_xref "SPD:12/12A02" ; GO "GO:0032476; decaprenyl diphosphate synthase complex 1
GO:0005743; mitochondrial inner membrane
GO:0016209; antioxidant activity
GO:0008834; di-trans,poly-cis- decaprenylcistransferase activity
GO:0019646; aerobic electron transport chain
GO:0070219; cellular sulfide ion homeostasis
GO:0006119; oxidative phosphorylation
GO:0019418; sulphide oxidation
GO:0006744; ubiquinone biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR003W; date=19700101 ||| term=genome organization, faster- evolving copy; cv=genome_org; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20070319 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=phenotype, growth defect, requires antioxidant for growth; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to H202; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to copper ions; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222" ; primary_name "dlp1" ; product "decaprenyl diphosphate synthase subunit 2 Dlp1" ; EC_number "2.5.1.31" ;
chromosome1 GeneDB CDS 4068756 4069640 . + . mRNA SPAC19G12.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4068863 4069875 . - . mRNA SPAC19G12.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19G12.13c" ; systematic_id "SPAC19G12.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4069641 4069847 . + . mRNA SPAC19G12.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19G12.12" ; systematic_id "SPAC19G12.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4069876 4070756 . - . mRNA SPAC19G12.13c ; systematic_id "SPAC19G12.13c" ; colour "2" ; gene "poz1 ||| SPAC19G12.13c" ; db_xref "SPD:11/11H09" ; Alias "poz1" ; GO "GO:0000781; chromosome,telomeric region
GO:0070187; telosome
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051974; negative regulation of telomerase activity
GO:0032211; negative regulation of telomere maintenance via telomerase
GO:0032211; negative regulation of telomere maintenance via telomerase
GO:0016233; telomere end protection
GO:0048239; negative regulation of DNA recombination at telomere" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=20080609 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "poz1" ; product "Pot1 associated protein Poz1" ;
chromosome1 GeneDB CDS 4069876 4070172 . - . mRNA SPAC19G12.13c ; colour "2" ;
chromosome1 GeneDB CDS 4070267 4070613 . - . mRNA SPAC19G12.13c ; colour "2" ;
chromosome1 GeneDB CDS 4070651 4070756 . - . mRNA SPAC19G12.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 4070173 4070200 . - . misc_feature unknown_3440 ; colour "6" ; note "ctaacagatgatgtttgatgtattctag, splice branch and acce ptor" ;
chromosome1 GeneDB misc_feature 4070261 4070266 . - . misc_feature unknown_3441 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4070614 4070625 . - . misc_feature unknown_3442 ; colour "6" ; note "ttaaccaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4070645 4070650 . - . misc_feature unknown_3443 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4070755 4070840 . - . mRNA SPAC19G12.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB repeat_region 4071908 4072017 . - . repeat_region unknown_3444 ; note "duplicated region in c25G10, possible ncRNA?" ;
chromosome1 GeneDB 5'-UTR 4072160 4072375 . + . mRNA SPAC19G12.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4072376 4074753 . + . mRNA SPAC19G12.14 ; systematic_id "SPAC19G12.14" ; colour "2" ; gene "its3 ||| SPAC19G12.14" ; db_xref "SPD:28/28E06" ; Alias "its3" ; GO "GO:0030428; cell septum
GO:0005886; plasma membrane
GO:0016308; 1-phophatidylinositol-4-phosphate 5- kinase activity
GO:0006651; diacylglycerol biosynthetic process
GO:0046488; phosphatidylinositol metabolism
GO:0071775; regulation of cell cycle cytokinesis
GO:0071775; regulation of cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10950958; date=19700101 ||| term=orthologous to S. cerevisiae YDR208W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:9873063; date=20090213 ||| term=target of Cki1; db_xref=PMID:9873063; date=20091231 ||| term=complementation, functionally complemented by S. cerevisiae YDR208W; db_xref=PMID:9873063; date=20100923" ; primary_name "its3" ; product "1-phosphatidylinositol-4-phosphate 5-kinase Its3" ; EC_number "2.7.1.68" ;
chromosome1 GeneDB CDS 4072376 4074126 . + . mRNA SPAC19G12.14 ; colour "2" ;
chromosome1 GeneDB CDS 4074180 4074291 . + . mRNA SPAC19G12.14 ; colour "2" ;
chromosome1 GeneDB CDS 4074388 4074753 . + . mRNA SPAC19G12.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 4074127 4074132 . + . misc_feature unknown_3445 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4074165 4074179 . + . misc_feature unknown_3446 ; colour "6" ; note "ttaacactattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4074292 4074297 . + . misc_feature unknown_3447 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4074373 4074387 . + . misc_feature unknown_3448 ; colour "6" ; note "cttaccggtgtttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4074754 4074960 . + . mRNA SPAC19G12.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19G12.14" ; systematic_id "SPAC19G12.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4074998 4075266 . - . mRNA SPAC19G12.15c ; Alias "tpp1" ; ID "SPAC19G12.15c" ; db_xref "SPD:28/28G10" ; systematic_id "SPAC19G12.15c" ; primary_name "tpp1" ; gene "tpp1 ||| SPAC19G12.15c" ; note "mRNA from SPD225" ;
chromosome1 GeneDB CDS_parts 4075267 4077720 . - . mRNA SPAC19G12.15c ; systematic_id "SPAC19G12.15c" ; colour "2" ; gene "tpp1 ||| SPAC19G12.15c" ; Alias "tpp1" ; db_xref "SPD:28/28G10" ; GO "GO:0004805; trehalose-phosphatase activity
GO:0005991; trehalose metabolism
GO:0033554; cellular response to stress
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR074W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827" ; primary_name "tpp1" ; product "trehalose-6-phosphate phosphatase Tpp1" ; EC_number "3.1.3.12" ;
chromosome1 GeneDB CDS 4075267 4077720 . - . mRNA SPAC19G12.15c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4077719 4077826 . - . mRNA SPAC19G12.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19G12.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4078319 4078937 . - . mRNA SPAC19G12.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19G12.16c" ; systematic_id "SPAC19G12.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4078938 4080950 . - . mRNA SPAC19G12.16c ; systematic_id "SPAC19G12.16c" ; colour "10" ; note "4.5 copies of 53AA repeat; consensus ATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTGS" ; Alias "adg2" ; db_xref "SPD:27/27E01" ; synonym "SPAC23A1.01c ||| mug46" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=similar to N. crassa ncu05667.1; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15689498; cv=gene_ex; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=name description, Ace2 Dependent Gene; db_xref=PMID:15689498; date=20100415" ; GO "GO:0009986; cell surface" ; primary_name "adg2" ; product "conserved fungal protein Adg2" ;
chromosome1 GeneDB CDS 4078938 4080950 . - . mRNA SPAC19G12.16c ; colour "10" ;
chromosome1 GeneDB misc_feature 4079581 4079731 . + . misc_feature unknown_3449 ; note "nominal overlap with cosmid SPAC23A1 and cosmid SPAC19G12" ;
chromosome1 GeneDB CDS_parts 4081483 4082775 . - . mRNA SPAC23A1.02c ; db_xref "SPD:22/22D11" ; systematic_id "SPAC23A1.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL039W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0006888; ER to Golgi vesicle-mediated transport" ; gene "SPAC23A1.02c" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome1 GeneDB CDS 4081483 4082775 . - . mRNA SPAC23A1.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4082774 4083493 . - . mRNA SPAC23A1.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4083686 4084430 . + . mRNA SPAC23A1.03 ; systematic_id "SPAC23A1.03" ; colour "7" ; gene "apt1 ||| SPAC23A1.03" ; Alias "apt1" ; db_xref "SPD:09/09A10" ; GO "GO:0003999; adenine phosphoribosyltransferase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006168; adenine salvage
GO:0006167; AMP biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, urolithiasis; date=20060920 ||| term=orthologous to S. cerevisiae YML022W and YDR441C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "apt1" ; product "adenine phosphoribosyltransferase (APRT) (predicted)" ; EC_number "2.4.2.7" ;
chromosome1 GeneDB CDS 4083686 4083769 . + . mRNA SPAC23A1.03 ; colour "7" ;
chromosome1 GeneDB CDS 4083948 4084430 . + . mRNA SPAC23A1.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 4083770 4083775 . + . misc_feature unknown_3450 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 4083770 4083947 . + . intron SPAC23A1.03 ; Alias "apt1" ; db_xref "SPD:09/09A10" ; systematic_id "SPAC23A1.03" ; primary_name "apt1" ; gene "apt1 ||| SPAC23A1.03" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4083935 4083947 . + . misc_feature unknown_3451 ; colour "6" ; note "ctaatgttattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4084431 4084596 . + . mRNA SPAC23A1.03 ; Alias "apt1" ; ID "SPAC23A1.03" ; db_xref "SPD:09/09A10" ; systematic_id "SPAC23A1.03" ; primary_name "apt1" ; gene "apt1 ||| SPAC23A1.03" ; note "mRNA from AU011703" ;
chromosome1 GeneDB 3'-UTR 4084648 4085019 . - . mRNA SPAC23A1.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23A1.04c" ; systematic_id "SPAC23A1.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4085020 4087440 . - . mRNA SPAC23A1.04c ; systematic_id "SPAC23A1.04c" ; colour "7" ; gene "mnl1 ||| SPAC23A1.04c" ; Alias "mnl1" ; db_xref "SPD:28/28F12" ; GO "GO:0005783; endoplasmic reticulum
GO:0030246; carbohydrate binding
GO:0004571; mannosyl-oligosaccharide 1,2-alpha- mannosidase activity
GO:0006516; glycoprotein catabolism
GO:0006517; protein deglycosylation
GO:0030433; ER-associated protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mnl1" ; product "alpha mannosidase Mnl1 (predicted)" ;
chromosome1 GeneDB CDS 4085020 4087276 . - . mRNA SPAC23A1.04c ; colour "7" ;
chromosome1 GeneDB CDS 4087334 4087440 . - . mRNA SPAC23A1.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 4087277 4087290 . - . misc_feature unknown_3452 ; colour "6" ; note "ctaacttttactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4087328 4087333 . - . misc_feature unknown_3453 ; colour "6" ; note "gtttga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4087439 4087665 . - . mRNA SPAC23A1.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4088773 4088870 . + . mRNA SPAC23A1.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4088871 4089176 . + . mRNA SPAC23A1.05 ; db_xref "SPD:01/01E09" ; systematic_id "SPAC23A1.05" ; GO "GO:0005783; endoplasmic reticulum
GO:0017059; serine C-palmitoyl transferase complex
GO:0030148; sphingolipid biosynthetic process
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090303 ||| term=species distribution, conserved in Fungi; date=20091002 ||| term=species distribution, conserved in Metazoa; date=20091002 ||| term=species distribution, conserved in Eukaryotes; date=20091002 ||| term=species distribution, conserved in Vertebrates; date=20091002 ||| term=human SSSPTA ortholog; date=20091002 ||| term=species distribution, conserved in Eukaryotes only; date=20091216 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100127" ; colour "7" ; gene "SPAC23A1.05" ; product "serine palmitoyl transferase A subunit (predicted)" ;
chromosome1 GeneDB CDS 4088871 4089176 . + . mRNA SPAC23A1.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4089177 4089700 . + . mRNA SPAC23A1.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23A1.05" ; systematic_id "SPAC23A1.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4089813 4090157 . - . mRNA SPAC23A1.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23A1.06c" ; systematic_id "SPAC23A1.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4090158 4092079 . - . mRNA SPAC23A1.06c ; systematic_id "SPAC23A1.06c" ; colour "2" ; db_xref "SPD:26/26G08" ; Alias "cmk2" ; synonym "mkp2" ; GO "GO:0030428; cell septum
GO:0005737; cytoplasm
GO:0005509; calcium ion binding
GO:0004683; calcium- and calmodulin-dependent protein kinase activity
GO:0005516; calmodulin binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0034599; cellular response to oxidative stress
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarityh
GO:0031098; stress-activated protein kinase signaling pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12135745; date=19700101 ||| term=orthologous to S. cerevisiae YGL158W and YLR248W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; evidence=IDA: db_xref=PMID:11886858; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Sty1; qualifier=phosphorylated_by; residue=THR411; db_xref=PMID:11886858; date=20100122" ; primary_name "cmk2" ; product "MAPK-activated protein kinase Cmk2" ; EC_number "2.7.11.17" ;
chromosome1 GeneDB CDS 4090158 4091357 . - . mRNA SPAC23A1.06c ; colour "2" ;
chromosome1 GeneDB CDS 4091660 4091756 . - . mRNA SPAC23A1.06c ; colour "2" ;
chromosome1 GeneDB CDS 4091822 4092024 . - . mRNA SPAC23A1.06c ; colour "2" ;
chromosome1 GeneDB CDS 4092065 4092079 . - . mRNA SPAC23A1.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 4091358 4091372 . - . misc_feature unknown_3454 ; colour "6" ; note "ctaactctttttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4091654 4091659 . - . misc_feature unknown_3455 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4091757 4091769 . - . misc_feature unknown_3456 ; colour "6" ; note "ctgacccaaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4091816 4091821 . - . misc_feature unknown_3457 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4092025 4092038 . - . misc_feature unknown_3458 ; colour "6" ; note "ctaataggtcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4092059 4092064 . - . misc_feature unknown_3459 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4092121 4092328 . + . mRNA SPAC23A1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4092329 4093084 . + . mRNA SPAC23A1.07 ; db_xref "SPD:09/09C06" ; systematic_id "SPAC23A1.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAC23A1.07" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB CDS 4092329 4093084 . + . mRNA SPAC23A1.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4093085 4093336 . + . mRNA SPAC23A1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23A1.07" ; systematic_id "SPAC23A1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4093344 4093428 . - . mRNA SPAC23A1.08c ; Alias "rpl34" ; ID "SPAC23A1.08c" ; db_xref "SPD:02/02A03" ; systematic_id "SPAC23A1.08c" ; primary_name "rpl34" ; gene "rpl34 ||| rpl34-1 ||| rpl3401 ||| SPAC23A1.08c" ; note "mRNA from AU011783" ;
chromosome1 GeneDB CDS_parts 4093429 4093767 . - . mRNA SPAC23A1.08c ; systematic_id "SPAC23A1.08c" ; colour "2" ; gene "rpl34 ||| rpl34-1 ||| rpl3401 ||| SPAC23A1.08c" ; Alias "rpl3401" ; db_xref "SPD:02/02A03" ; synonym "rpl34 ||| rpl34-1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER056C-A and YIL052C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl3401" ; product "60S ribosomal protein L34" ;
chromosome1 GeneDB CDS 4093429 4093767 . - . mRNA SPAC23A1.08c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4093766 4093772 . - . mRNA SPAC23A1.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4094177 4094542 . + . mRNA SPAC23A1.09 ; db_xref "SPD:02/02E09" ; systematic_id "SPAC23A1.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; gene "SPAC23A1.09" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB CDS 4094177 4094542 . + . mRNA SPAC23A1.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4094543 4094878 . + . mRNA SPAC23A1.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23A1.09" ; systematic_id "SPAC23A1.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4095149 4095201 . + . mRNA SPAC23A1.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4095202 4096584 . + . mRNA SPAC23A1.10 ; systematic_id "SPAC23A1.10" ; colour "2" ; Alias "tef102" ; db_xref "SPD:21/21D07" ; obsolete_name "tef1-b ||| tef1-d ||| ef1a-d ||| SPBC24E9.15c" ; synonym "ef1a-b" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation
GO:0005853; eukaryotic translation elongation factor 1 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR080W and YBR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tef102" ; product "translation elongation factor EF-1 alpha Ef1a-b" ;
chromosome1 GeneDB CDS 4095202 4096584 . + . mRNA SPAC23A1.10 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4096585 4096622 . + . mRNA SPAC23A1.10 ; ID "SPAC23A1.10" ; db_xref "EMBL:D82573 ||| SPD:21/21D07" ; systematic_id "SPAC23A1.10" ;
chromosome1 GeneDB CDS_parts 4097334 4097982 . + . mRNA SPAC23A1.11 ; systematic_id "SPAC23A1.11" ; colour "7" ; gene "rpl1602 ||| rpl16-2 ||| SPAC23A1.11" ; Alias "rpl1602" ; db_xref "SPD:42/42F09" ; obsolete_name "rpl13a-2" ; synonym "rpl16-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL133C and YNL069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; primary_name "rpl1602" ; product "60S ribosomal protein L13/L16 (predicted)" ;
chromosome1 GeneDB CDS 4097334 4097374 . + . mRNA SPAC23A1.11 ; colour "7" ;
chromosome1 GeneDB CDS 4097430 4097982 . + . mRNA SPAC23A1.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 4097375 4097380 . + . misc_feature unknown_3460 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 4097375 4097429 . + . intron SPAC23A1.11 ; Alias "rpl1602" ; db_xref "SPD:42/42F09" ; systematic_id "SPAC23A1.11" ; primary_name "rpl1602" ; gene "rpl1602 ||| rpl16-2 ||| SPAC23A1.11" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4097416 4097429 . + . misc_feature unknown_3461 ; colour "6" ; note "ctaacaaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4097983 4098062 . + . mRNA SPAC23A1.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23A1.11" ; systematic_id "SPAC23A1.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4098280 4098302 . - . mRNA SPAC23A1.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23A1.12c" ; systematic_id "SPAC23A1.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4098303 4100123 . - . mRNA SPAC23A1.12c ; systematic_id "SPAC23A1.12c" ; colour "7" ; gene "SPAC23A1.12c ||| frs1" ; Alias "frs1" ; obsolete_name "frs2" ; db_xref "KEGG:MAP00400; ||| KEGG:MAP00970; ||| SPD:36/36F08" ; GO "GO:0006432; phenylalanyl-tRNA aminoacylation
GO:0004826; phenylalanine-tRNA ligase activity
GO:0005737; cytoplasm
GO:0009328; phenylalanine-tRNA ligase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "frs1" ; product "phenylalanine-tRNA ligase beta subunit Frs1 (predicted)" ; EC_number "6.1.1.20" ;
chromosome1 GeneDB CDS 4098303 4100014 . - . mRNA SPAC23A1.12c ; colour "7" ;
chromosome1 GeneDB CDS 4100066 4100123 . - . mRNA SPAC23A1.12c ; colour "7" ;
chromosome1 GeneDB misc_feature 4100015 4100029 . - . misc_feature unknown_3462 ; colour "6" ; note "ttaacataattgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4100060 4100065 . - . misc_feature unknown_3463 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4100122 4100152 . - . mRNA SPAC23A1.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4100552 4100754 . - . mRNA SPAC23A1.20 ; db_xref "PMID:21270388" ; systematic_id "SPAC23A1.20" ;
chromosome1 GeneDB CDS_parts 4100755 4101318 . - . mRNA SPAC23A1.20 ; Alias "new11" ; pseudo "_no_value" ; systematic_id "SPAC23A1.20" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "13" ; primary_name "new11" ; gene "SPAC23A1.20 ||| new11" ; product "conserved gene with no initiator methionine" ; note "conserved in japonicus; matches transcript from Solexa; can't find N-tem exon; No METHIONINE" ;
chromosome1 GeneDB CDS 4100755 4101318 . - . mRNA SPAC23A1.20 ; colour "13" ;
chromosome1 GeneDB 3'-UTR 4101303 4101758 . - . mRNA SPAC23A1.14c ; ID "SPAC23A1.14c" ; db_xref "SPD:19/19B05" ; systematic_id "SPAC23A1.14c" ; gene "SPAC23A1.14c" ; note "mRNA from SPD237" ;
chromosome1 GeneDB 5'-UTR 4101319 4101518 . - . mRNA SPAC23A1.20 ; db_xref "PMID:21270388" ; systematic_id "SPAC23A1.20" ;
chromosome1 GeneDB CDS_parts 4101759 4102955 . - . mRNA SPAC23A1.14c ; db_xref "SPD:19/19B05" ; systematic_id "SPAC23A1.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR112C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPAC23A1.14c" ; product "uncharacterised trans-sulfuration enzyme (predicted)" ;
chromosome1 GeneDB CDS 4101759 4102955 . - . mRNA SPAC23A1.14c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4102954 4103183 . - . mRNA SPAC23A1.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4103942 4104622 . - . mRNA SPAC23A1.15c ; systematic_id "SPAC23A1.15c" ; colour "7" ; gene "SPAC23A1.15c ||| sec20" ; Alias "sec20" ; db_xref "SPD:07/07H05" ; GO "GO:0005484; SNAP receptor activity
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YDR498C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sec20" ; product "SNARE Sec20 (predicted)" ;
chromosome1 GeneDB CDS 4103942 4104622 . - . mRNA SPAC23A1.15c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4104621 4104715 . - . mRNA SPAC23A1.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4104885 4105115 . - . mRNA SPAC23A1.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23A1.16c" ; systematic_id "SPAC23A1.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4105116 4105709 . - . mRNA SPAC23A1.16c ; db_xref "SPD:06/06E06" ; systematic_id "SPAC23A1.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER139C; date=19700101 ||| term=human RPAP2 ortholog; db_xref=PMID:18408053; date=20080416 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0043175; RNA polymerase core enzyme binding
GO:0030528; transcription regulator activity
GO:0006366; transcription from RNA polymerase II promoter
GO:0008420; CTD phosphatase activity
GO:0070940; dephosphorylation of RNA polymerase II C-terminal domain" ; gene "SPAC23A1.16c" ; product "RNA polymerase II CTD phosphatase Rtr1 (predicted)" ;
chromosome1 GeneDB CDS 4105116 4105709 . - . mRNA SPAC23A1.16c ; colour "7" ;
chromosome1 GeneDB misc_RNA 4106634 4106726 . + . misc_RNA SPNCRNA.341 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.341" ; synonym "SPNG795" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 4106702 4106826 . + . mRNA SPAC23A1.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4106827 4111662 . + . mRNA SPAC23A1.17 ; db_xref "SPD:48/48G09" ; systematic_id "SPAC23A1.17" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0017024; myosin I binding
GO:0030036; actin cytoskeleton organization and biogenesis" ; gene "SPAC23A1.17" ; product "WIP (Wiskott-Aldrich syndrome protein- Interacting Protein) homolog (predicted)" ;
chromosome1 GeneDB CDS 4106827 4111662 . + . mRNA SPAC23A1.17 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4111663 4111980 . + . mRNA SPAC23A1.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23A1.17" ; systematic_id "SPAC23A1.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4112086 4112684 . - . mRNA SPAC23A1.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23A1.18c" ; systematic_id "SPAC23A1.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4112685 4113560 . - . mRNA SPAC23A1.18c ; systematic_id "SPAC23A1.18c" ; colour "7" ; gene "SPAC23A1.18c ||| mrp51" ; Alias "mrp51" ; db_xref "SPD:11/11H04" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0070124; mitochondrial translational initiation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL118W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mrp51" ; product "mitochondrial ribosomal protein subunit L51-b (predicted)" ;
chromosome1 GeneDB CDS 4112685 4113560 . - . mRNA SPAC23A1.18c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4113559 4113627 . - . mRNA SPAC23A1.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4113815 4117181 . - . mRNA SPAC23A1.19c ; systematic_id "SPAC23A1.19c" ; colour "7" ; gene "SPAC23A1.19c ||| SPAC26H5.01c" ; db_xref "SPD:48/48C02" ; synonym "SPAC26H5.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RecQ family; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDR291W; date=19700101 ||| term=human RECQL4 ortholog; qualifier=predicted; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, Rothmund- Thomsom syndrome; date=20100820 ||| term=disease associated, RAPADILINO syndrome; date=20100820 ||| term=disease associated, cancer; date=20100820 ||| term=disease associated, ageing; date=20100820" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0043140; ATP-dependent 3'-5' DNA helicase activity
GO:0000739; DNA strand annealing activity
GO:0000405; bubble DNA binding
GO:0000733; DNA strand renaturation
GO:0000731; DNA synthesis involved in DNA repair" ; product "RecQ type DNA helicase Hrq1 (predicted)" ;
chromosome1 GeneDB CDS 4113815 4113933 . - . mRNA SPAC23A1.19c ; colour "7" ;
chromosome1 GeneDB CDS 4114109 4117181 . - . mRNA SPAC23A1.19c ; colour "7" ;
chromosome1 GeneDB misc_feature 4113934 4113951 . - . misc_feature unknown_3464 ; colour "6" ; note "ctaacatatttctttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4114103 4114108 . - . misc_feature unknown_3465 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4115253 4115349 . + . misc_feature unknown_3466 ; note "nominal overlap with cosmid SPAC26H5 and cosmid SPAC23A1" ;
chromosome1 GeneDB 5'-UTR 4117180 4117202 . - . mRNA SPAC23A1.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23A1.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4117287 4118973 . - . mRNA SPAC26H5.02c ; db_xref "SPD:26/26A03" ; systematic_id "SPAC26H5.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YNL218W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; attribution=pers. comm. S. MacNeill; date=20050419 ||| term=human WRNIP ortholog; date=20100820 ||| term=modification, ubiquitinated; evidence=ISS; date=20100820 ||| term=modification, sumoylated; evidence=ISS; date=20100820" ; colour "7" ; GO "GO:0043142; single-stranded DNA-dependent ATPase activity
GO:0005634; nucleus
GO:0033567; DNA replication, Okazaki fragment processing
GO:0000731; DNA synthesis involved in DNA repair" ; gene "SPAC26H5.02c" ; product "DNA replication ATPase (predicted)" ;
chromosome1 GeneDB CDS 4117287 4117385 . - . mRNA SPAC26H5.02c ; colour "7" ;
chromosome1 GeneDB CDS 4117426 4118200 . - . mRNA SPAC26H5.02c ; colour "7" ;
chromosome1 GeneDB CDS 4118245 4118262 . - . mRNA SPAC26H5.02c ; colour "7" ;
chromosome1 GeneDB CDS 4118308 4118338 . - . mRNA SPAC26H5.02c ; colour "7" ;
chromosome1 GeneDB CDS 4118382 4118973 . - . mRNA SPAC26H5.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 4118201 4118212 . - . misc_feature unknown_3467 ; colour "6" ; note "ttaacattgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4118239 4118244 . - . misc_feature unknown_3468 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4118263 4118278 . - . misc_feature unknown_3469 ; colour "6" ; note "ctaacctttgaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4118302 4118307 . - . misc_feature unknown_3470 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4118339 4118352 . - . misc_feature unknown_3471 ; colour "6" ; note "ttaaccatgactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4118376 4118381 . - . misc_feature unknown_3472 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4118972 4119188 . - . mRNA SPAC26H5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26H5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4119733 4119898 . + . mRNA SPAC26H5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26H5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4119899 4121638 . + . mRNA SPAC26H5.03 ; systematic_id "SPAC26H5.03" ; colour "2" ; gene "cac2 ||| SPAC26H5.03" ; Alias "pcf2" ; db_xref "SPD:35/35H06" ; synonym "cac2" ; GO "GO:0033186; CAF-1 complex
GO:0016585; chromatin remodeling complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0006335; DNA replication-dependent nucleosome assembly
GO:0030437; ascospore formation
GO:0070829; heterochromatin maintenance
GO:0035067; negative regulation of histone acetylation
GO:0006334; nucleosome assembly
GO:0090053; positive regulation of chromatin silencing at centromere
GO:0090055; positive regulation of chromatin silencing at mating type cassette
GO:0051574; positive regulation of histone H3-K9 methylation
GO:0034504; protein localization in nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YML102W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CAF1p60 ortholog; db_xref=PMID:18761674; date=20090723 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18761674; date=20090723 ||| term=misc functional group, histone chaperone; db_xref=PMID:18761674; cv=m_f_g; date=20090723 ||| term=name description, Pombe CAF-1 First subunit; db_xref=PMID:18761674; date=20090723 ||| term=phenotype, sporulation defects; qualifier=deletion; db_xref=PMID:18761674; cv=phenotype; date=20090723" ; primary_name "pcf2" ; product "CAF assembly factor (CAF-1) complex subunit B, Pcf2" ;
chromosome1 GeneDB CDS 4119899 4120030 . + . mRNA SPAC26H5.03 ; colour "2" ;
chromosome1 GeneDB CDS 4120126 4120228 . + . mRNA SPAC26H5.03 ; colour "2" ;
chromosome1 GeneDB CDS 4120270 4120512 . + . mRNA SPAC26H5.03 ; colour "2" ;
chromosome1 GeneDB CDS 4120578 4121638 . + . mRNA SPAC26H5.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 4120031 4120036 . + . misc_feature unknown_3473 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4120115 4120125 . + . misc_feature unknown_3474 ; colour "6" ; note "ctaatatccag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4120229 4120234 . + . misc_feature unknown_3475 ; colour "6" ; note "gtattc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4120255 4120269 . + . misc_feature unknown_3476 ; colour "6" ; note "ctcacattaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4120513 4120518 . + . misc_feature unknown_3477 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4120566 4120577 . + . misc_feature unknown_3478 ; colour "6" ; note "ctgactaagaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4121639 4121824 . + . mRNA SPAC26H5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26H5.03" ; systematic_id "SPAC26H5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4121964 4122148 . + . mRNA SPAC26H5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26H5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4122149 4124518 . + . mRNA SPAC26H5.04 ; systematic_id "SPAC26H5.04" ; colour "7" ; gene "SPAC26H5.04" ; note "possible in frame splice at 4123354,4123535, improved homology, but unsupproted" ; db_xref "SPD:38/38C12" ; GO "GO:0045721; negative regulation of gluconeogenesis
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007039; vacuolar protein catabolism
GO:0034657; GID complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=armadillo repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YIL017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "vacuolar import and degradation protein Vid28 (predicted)" ;
chromosome1 GeneDB CDS 4122149 4124518 . + . mRNA SPAC26H5.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4124519 4124710 . + . mRNA SPAC26H5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26H5.04" ; systematic_id "SPAC26H5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4125124 4125211 . + . mRNA SPAC26H5.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26H5.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4125212 4128667 . + . mRNA SPAC26H5.05 ; db_xref "SPD:48/48D01" ; systematic_id "SPAC26H5.05" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL020C and YIR033W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=misc functional group, membrane tethered transctiption factor; date=20110117" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0045723; positive regulation of fatty acid biosynthesic process
GO:0071458; integral to cytosolic side of endoplasmic reticulum membrane
GO:0010552; positive regulation of gene specific transcription from RNA polymerase II promoter
GO:0016563; transcription activator activity
GO:0005634; nucleus" ; gene "SPAC26H5.05" ; product "IPT/TIG ankyrin repeat containing transcription regulator of fatty acid biosynthesis (predicted)" ;
chromosome1 GeneDB CDS 4125212 4128667 . + . mRNA SPAC26H5.05 ; colour "7" ;
chromosome1 GeneDB intron 4125558 4125623 . + . intron SPAC26H5.05 ; db_xref "SPD:48/48D01" ; systematic_id "SPAC26H5.05" ; gene "SPAC26H5.05" ;
chromosome1 GeneDB 3'-UTR 4128668 4128756 . + . mRNA SPAC26H5.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26H5.05" ; systematic_id "SPAC26H5.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4129253 4129528 . + . mRNA SPAC26H5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26H5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4129529 4131314 . + . mRNA SPAC26H5.06 ; systematic_id "SPAC26H5.06" ; colour "2" ; gene "pot1 ||| SPAC26H5.06" ; Alias "pot1" ; db_xref "SPD:45/45H02" ; GO "GO:0070187; telosome
GO:0005515; protein binding
GO:0043047; single-stranded telomeric DNA binding
GO:0000070; mitotic sister chromatid segregation
GO:0016233; telomere capping
GO:0007004; telomere maintenance via telomerase" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=OB fold; date=19700101 ||| term=orthologous to S. cerevisiae YDL220C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11349150; date=20100712" ; primary_name "pot1" ; product "telomere end-binding protein Pot1" ;
chromosome1 GeneDB CDS 4129529 4129597 . + . mRNA SPAC26H5.06 ; colour "2" ;
chromosome1 GeneDB CDS 4129644 4129764 . + . mRNA SPAC26H5.06 ; colour "2" ;
chromosome1 GeneDB CDS 4129837 4131314 . + . mRNA SPAC26H5.06 ; colour "2" ;
chromosome1 GeneDB intron 4129598 4129643 . + . intron SPAC26H5.06 ; Alias "pot1" ; db_xref "SPD:45/45H02" ; systematic_id "SPAC26H5.06" ; primary_name "pot1" ; gene "pot1 ||| SPAC26H5.06" ; note "Intron confirmed by cDNA" ;
chromosome1 GeneDB misc_feature 4129765 4129770 . + . misc_feature unknown_3479 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB intron 4129765 4129836 . + . intron SPAC26H5.06 ; Alias "pot1" ; db_xref "SPD:45/45H02" ; systematic_id "SPAC26H5.06" ; primary_name "pot1" ; gene "pot1 ||| SPAC26H5.06" ; note "Intron confirmed by cDNA" ;
chromosome1 GeneDB misc_feature 4129818 4129836 . + . misc_feature unknown_3480 ; colour "6" ; note "ctaataatcatgtttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4131447 4131565 . - . mRNA SPAC26H5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26H5.07c" ; systematic_id "SPAC26H5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4131566 4133463 . - . mRNA SPAC26H5.07c ; db_xref "SPD:26/26E10" ; systematic_id "SPAC26H5.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL039W and YHL017W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004872; receptor activity
GO:0007166; cell surface receptor linked signal transduction
GO:0005887; integral to plasma membrane" ; gene "SPAC26H5.07c" ; product "seven transmembrane receptor protein (predicted)" ;
chromosome1 GeneDB CDS 4131566 4132923 . - . mRNA SPAC26H5.07c ; colour "7" ;
chromosome1 GeneDB CDS 4133227 4133299 . - . mRNA SPAC26H5.07c ; colour "7" ;
chromosome1 GeneDB CDS 4133377 4133463 . - . mRNA SPAC26H5.07c ; colour "7" ;
chromosome1 GeneDB intron 4132924 4133226 . - . intron SPAC26H5.07c ; db_xref "SPD:26/26E10" ; systematic_id "SPAC26H5.07c" ; gene "SPAC26H5.07c" ; note "confirmed intron" ;
chromosome1 GeneDB intron 4133300 4133376 . - . intron SPAC26H5.07c ; db_xref "SPD:26/26E10" ; systematic_id "SPAC26H5.07c" ; gene "SPAC26H5.07c" ; note "confirmed intron" ;
chromosome1 GeneDB 5'-UTR 4133462 4133480 . - . mRNA SPAC26H5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26H5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4134378 4134621 . - . mRNA SPAC26H5.08c ; Alias "bgl2" ; ID "SPAC26H5.08c" ; db_xref "SPD:13/13G01" ; systematic_id "SPAC26H5.08c" ; primary_name "bgl2" ; gene "bgl2 ||| SPAC26H5.08c" ; note "mRNA from SPAB539" ;
chromosome1 GeneDB CDS_parts 4134622 4135587 . - . mRNA SPAC26H5.08c ; systematic_id "SPAC26H5.08c" ; colour "7" ; gene "bgl2 ||| SPAC26H5.08c" ; Alias "bgl2" ; db_xref "SPD:13/13G01" ; GO "GO:0009277; cell wall (sensu Fungi)
GO:0004338; beta-glucosidase activity
GO:0070879; fungal-type cell wall beta-glucan metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR282C; date=19700101 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "bgl2" ; product "glucan beta-glucosidase Bgl2 (predicted)" ; EC_number "3.2.1.58" ;
chromosome1 GeneDB CDS 4134622 4135587 . - . mRNA SPAC26H5.08c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4135586 4135902 . - . mRNA SPAC26H5.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26H5.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4136052 4137107 . + . misc_RNA SPNCRNA.306 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.306" ; synonym "SPNG798-99" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 4137266 4137572 . - . mRNA SPAC26H5.09c ; ID "SPAC26H5.09c" ; db_xref "SPD:17/17D12" ; systematic_id "SPAC26H5.09c" ; note "mRNA from SPD186" ;
chromosome1 GeneDB CDS_parts 4137573 4138682 . - . mRNA SPAC26H5.09c ; db_xref "SPD:17/17D12" ; systematic_id "SPAC26H5.09c" ; GO "GO:0006740; NADPH regeneration
GO:0016491; oxidoreductase activity
GO:0006740; NADPH regeneration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR315W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; product "gfo/idh/mocA family oxidoreductase (predicted)" ;
chromosome1 GeneDB CDS 4137573 4138682 . - . mRNA SPAC26H5.09c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4138683 4138718 . - . mRNA SPAC26H5.09c ; ID "SPAC26H5.09c" ; db_xref "PMID:18488015" ; systematic_id "SPAC26H5.09c" ; note "from solexa transcript SPNG800" ;
chromosome1 GeneDB intron 4138719 4138979 . - . intron SPAC26H5.09c ; db_xref "SPD:17/17D12" ; systematic_id "SPAC26H5.09c" ;
chromosome1 GeneDB LTR 4140539 4140896 . - . LTR unknown_3481 ; colour "4" ; note "Tf1 type LTR" ;
chromosome1 GeneDB 3'-UTR 4141281 4141739 . - . mRNA SPAC26H5.10c ; Alias "tif51" ; ID "SPAC26H5.10c" ; db_xref "SPD:04/04D03" ; systematic_id "SPAC26H5.10c" ; primary_name "tif51" ; gene "tif51 ||| SPAC26H5.10c" ; note "mRNA from AU009021" ;
chromosome1 GeneDB CDS_parts 4141740 4142213 . - . mRNA SPAC26H5.10c ; systematic_id "SPAC26H5.10c" ; colour "7" ; gene "tif51 ||| SPAC26H5.10c" ; db_xref "SPD:04/04D03" ; Alias "tif51" ; GO "GO:0003746; translation elongation factor activity
GO:0045901; positive regulation of translational elongation
GO:0022626; cytosolic ribosome
GO:0043022; ribosome binding
GO:0045905; positive regulation of translational termination
GO:0003723; RNA binding
GO:0006452; translational frameshifting" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR047C and YEL034W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tif51" ; product "translation elongation factor eIF5A (predicted)" ;
chromosome1 GeneDB CDS 4141740 4142213 . - . mRNA SPAC26H5.10c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4142214 4142329 . - . mRNA SPAC26H5.10c ; Alias "tif51" ; ID "SPAC26H5.10c" ; systematic_id "SPAC26H5.10c" ; primary_name "tif51" ; gene "tif51 ||| SPAC26H5.10c" ; note "mRNA from AU007282" ;
chromosome1 GeneDB 5'-UTR 4143658 4144165 . + . mRNA SPAC26H5.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26H5.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4144166 4147113 . + . mRNA SPAC26H5.11 ; systematic_id "SPAC26H5.11" ; colour "7" ; gene "SPAC26H5.11 ||| mug56" ; Alias "mug56" ; db_xref "SPD:29/29G06" ; GO "GO:0005619; spore wall (sensu Fungi)
GO:0030476; spore wall assembly (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR104C; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mug56" ; product "spore wall assembly protein (predicted)" ;
chromosome1 GeneDB CDS 4144166 4146978 . + . mRNA SPAC26H5.11 ; colour "7" ;
chromosome1 GeneDB CDS 4147029 4147113 . + . mRNA SPAC26H5.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 4146979 4146984 . + . misc_feature unknown_3482 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4147014 4147028 . + . misc_feature unknown_3483 ; colour "6" ; note "ctaacttttcttcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4147114 4147120 . + . mRNA SPAC26H5.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26H5.11" ; systematic_id "SPAC26H5.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4147676 4147840 . + . mRNA SPAC26H5.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26H5.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4147841 4151203 . + . mRNA SPAC26H5.12 ; systematic_id "SPAC26H5.12" ; colour "2" ; gene "SPAC26H5.12 ||| rpo41" ; Alias "rpo41" ; db_xref "SPD:30/30D10" ; GO "GO:0005759; mitochondrial matrix
GO:0003899; DNA-directed RNA polymerase activity
GO:0000002; mitochondrial genome maintenance
GO:0006390; transcription from mitochondrial promoter
GO:0001044; mitochondrial RNA polymerase regulatory region sequence-specific DNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpo41" ; product "mitochondrial RNA polymerase Rpo41" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB CDS 4147841 4151203 . + . mRNA SPAC26H5.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4151204 4151468 . + . mRNA SPAC26H5.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26H5.12" ; systematic_id "SPAC26H5.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4151251 4151694 . - . mRNA SPAC26H5.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26H5.13c" ; systematic_id "SPAC26H5.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4151695 4152494 . - . mRNA SPAC26H5.13c ; systematic_id "SPAC26H5.13c" ; colour "7" ; db_xref "SPD:10/10B01" ; Alias "kei1" ; GO "GO:0030173; integral to Golgi membrane
GO:0070916; inositolphoshorylceramide synthase complex
GO:0006674; inositol phosphorylceramide metabolic process
GO:0070917; inositolphoshorylceramide synthase regulator activity
GO:0030148; sphingolipid biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR367W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, proteolytic cleavage; qualifier=predicted; cv=pt_mod; evidence=ISS; date=20090910" ; primary_name "kei1" ; product "inositol phoshorylceramide synthase regulatory subunit Kei1 (predicted)" ;
chromosome1 GeneDB CDS 4151695 4152345 . - . mRNA SPAC26H5.13c ; colour "7" ;
chromosome1 GeneDB CDS 4152435 4152494 . - . mRNA SPAC26H5.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 4152346 4152357 . - . misc_feature unknown_3484 ; colour "6" ; note "ctaattcattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4152429 4152434 . - . misc_feature unknown_3485 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4152493 4152953 . - . mRNA SPAC26H5.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26H5.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4153649 4156352 . - . misc_feature unknown_3486 ; note "nominal overlap with SPAC26H5 S. pombe chromosome 1" ;
chromosome1 GeneDB conflict 4153652 4153674 . + . conflict unknown_3487 ; citation "[1]" ; note "this run of As had 21 bases in s5B8 and 23 in c26H5. changed to 23 to contiguate" ;
chromosome1 GeneDB misc_feature 4153653 4156352 . - . misc_feature unknown_3488 ; note "nominal overlap with cosmid SPAC25B8, EM:AL133225 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_RNA 4154360 4154694 . + . misc_RNA SPNCRNA.242 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.242" ; synonym "SPNG807" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 64 amino acids" ;
chromosome1 GeneDB misc_feature 4154365 4154559 . + . misc_feature unknown_3489 ; db_xref "PMID:18488015" ; note "ORF in RNA" ;
chromosome1 GeneDB snoRNA 4154912 4155002 . + . snoRNA SPSNORNA.13 ; Alias "snoR69b" ; systematic_id "SPSNORNA.13" ; controlled_curation "term=orthologous to S. cerevisiae snR71 and snR69; date=20070104" ; primary_name "snoR69b" ; gene "snoR69b ||| SPSNORNA.13" ; product "small nucleolar RNA snoR69b (predicted)" ;
chromosome1 GeneDB CDS_parts 4155473 4155973 . + . mRNA SPAC25B8.01 ; systematic_id "SPAC25B8.01" ; colour "2" ; gene "SPAC26H5.15 ||| SPAC25B8.01 ||| dap1" ; Alias "dap1" ; db_xref "SPD:04/04H03" ; synonym "SPAC26H5.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=20061113 ||| term=name description, Damage Assistance Protein; cv=name_description; date=20061113 ||| term=gene expression, transcriptionally regulated by Sre1; db_xref=PMID:15797383; cv=gene_ex; date=20070216 ||| term=orthologous to S. cerevisiae YPL170W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0016020; membrane
GO:0008047; enzyme activator activity
GO:0020037; heme binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005496; steroid binding
GO:0006696; ergosterol biosynthesis
GO:0006696; ergosterol biosynthesis" ; primary_name "dap1" ; product "cytochrome P450 regulator Dap1" ;
chromosome1 GeneDB CDS 4155473 4155973 . + . mRNA SPAC25B8.01 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4155974 4156147 . + . mRNA SPAC25B8.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.01" ; systematic_id "SPAC25B8.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4156526 4156538 . + . mRNA SPAC25B8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4156539 4157342 . + . mRNA SPAC25B8.02 ; systematic_id "SPAC25B8.02" ; colour "2" ; gene "SPAC25B8.02 ||| sds3" ; Alias "sds3" ; db_xref "SPD:10/10B11" ; GO "GO:0032221; Clr6 histone deacetylase complex I/I
GO:0016575; histone deacetylation
GO:0006342; chromatin silencing
GO:0033698; Clr6 histone deacetylase complex I/I'
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL084C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20090212" ; primary_name "sds3" ; product "Clr6 histone deacetylase complex subunit Sds3" ;
chromosome1 GeneDB CDS 4156539 4157342 . + . mRNA SPAC25B8.02 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4157343 4157633 . + . mRNA SPAC25B8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.02" ; systematic_id "SPAC25B8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4157907 4158827 . + . mRNA SPAC25B8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4158828 4160378 . + . mRNA SPAC25B8.03 ; literature "PMID:19286980" ; systematic_id "SPAC25B8.03" ; colour "2" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00561; ||| SPD:25/25B04" ; Alias "psd2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for ethanolamine ; cv=phenotype; db_xref=PMID:198286980; qualifier=deletion; with=GeneDB_Spombe:SPBC16E9.18|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19286980; date=20090727 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPBC16E9.18|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=phenotype, cell morphology, misshapen cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPBC16E9.18|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=orthologous to S. cerevisiae YNL169C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0004609; phosphatidylserine decarboxylase activity
GO:0006656; phosphatidylcholine biosynthesis
GO:0006646; phosphatidylethanolamine biosynthetic process
GO:0008360; regulation of cell shape
GO:0071775; regulation of cell cycle cytokinesis" ; primary_name "psd2" ; product "phosphatidylserine decarboxylase Psd2" ; EC_number "4.1.1.65" ;
chromosome1 GeneDB CDS 4158828 4160378 . + . mRNA SPAC25B8.03 ; colour "2" ;
chromosome1 GeneDB intron 4159393 4159521 . + . intron SPAC25B8.03 ; db_xref "SPD:25/25B04" ; systematic_id "SPAC25B8.03" ; note "inframe intron, not included in SPAC25B8.03 gene prediction" ;
chromosome1 GeneDB 3'-UTR 4160379 4160489 . + . mRNA SPAC25B8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.03" ; systematic_id "SPAC25B8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4160820 4160851 . - . mRNA SPAC25B8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.04c" ; systematic_id "SPAC25B8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4160852 4161988 . - . mRNA SPAC25B8.04c ; db_xref "SPD:17/17H07" ; systematic_id "SPAC25B8.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR203C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0045727; positive regulation of translation" ; gene "SPAC25B8.04c" ; product "mitochondrial splicing suppressor (predicted)" ;
chromosome1 GeneDB CDS 4160852 4161988 . - . mRNA SPAC25B8.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4161987 4162135 . - . mRNA SPAC25B8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4162743 4162799 . + . mRNA SPAC25B8.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4162800 4164152 . + . mRNA SPAC25B8.05 ; db_xref "SPD:20/20H12" ; systematic_id "SPAC25B8.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0009982; tRNA-pseudouridine synthase activity
GO:0031119; tRNA pseudouridine synthesis" ; gene "SPAC25B8.05" ; product "tRNA-pseudouridine synthase (predicted)" ;
chromosome1 GeneDB CDS 4162800 4164152 . + . mRNA SPAC25B8.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4164153 4164171 . + . mRNA SPAC25B8.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.05" ; systematic_id "SPAC25B8.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4164228 4164277 . - . mRNA SPAC25B8.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.06c" ; systematic_id "SPAC25B8.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4164278 4165699 . - . mRNA SPAC25B8.06c ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:44/44F01" ; systematic_id "SPAC25B8.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004828; serine-tRNA ligase activity
GO:0006434; seryl-tRNA aminoacylation" ; gene "SPAC25B8.06c" ; product "mitochondrial serine-tRNA ligase (predicted)" ; EC_number "6.1.1.11" ;
chromosome1 GeneDB CDS 4164278 4164599 . - . mRNA SPAC25B8.06c ; colour "7" ;
chromosome1 GeneDB CDS 4164657 4165699 . - . mRNA SPAC25B8.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 4164600 4164612 . - . misc_feature unknown_3490 ; colour "6" ; note "ctaacgaatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4164651 4164656 . - . misc_feature unknown_3491 ; colour "6" ; note "gtacat, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4165698 4165883 . - . mRNA SPAC25B8.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4166212 4167310 . - . mRNA SPAC25B8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.07c" ; systematic_id "SPAC25B8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4167311 4167652 . - . mRNA SPAC25B8.07c ; db_xref "SPD:02/02A10" ; systematic_id "SPAC25B8.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC25B8.07c" ; product "hypoxia induced family protein" ;
chromosome1 GeneDB CDS 4167311 4167652 . - . mRNA SPAC25B8.07c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4167651 4167697 . - . mRNA SPAC25B8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4168212 4169984 . + . mRNA SPAC25B8.08 ; db_xref "SPD:36/36C03" ; systematic_id "SPAC25B8.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR089W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC25B8.08" ; product "conserved fungal protein" ; note "possibly conserved in metazoa also" ;
chromosome1 GeneDB CDS 4168212 4169984 . + . mRNA SPAC25B8.08 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4169985 4170062 . + . mRNA SPAC25B8.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.08" ; systematic_id "SPAC25B8.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4170550 4170713 . + . mRNA SPAC25B8.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4170714 4171469 . + . mRNA SPAC25B8.09 ; db_xref "SPD:09/09C07" ; systematic_id "SPAC25B8.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YER175C and YHR209W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Eukaryotes only; date=20100827" ; GO "GO:0046547; trans-aconitate 3-methyltransferase activity
GO:0005829; cytosol
GO:0044262; cellular carbohydrate metabolism" ; gene "SPAC25B8.09" ; product "trans-aconitate 3-methyltransferase (predicted)" ; EC_number "2.1.1.145" ;
chromosome1 GeneDB CDS 4170714 4171469 . + . mRNA SPAC25B8.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4171470 4171657 . + . mRNA SPAC25B8.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.09" ; systematic_id "SPAC25B8.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4172149 4172175 . + . mRNA SPAC25B8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4172176 4172946 . + . mRNA SPAC25B8.10 ; db_xref "SPD:09/09E08" ; systematic_id "SPAC25B8.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YER175C and YHR209W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100821" ; GO "GO:0005829; cytosol
GO:0046547; trans-aconitate 3-methyltransferase activity
GO:0044262; cellular carbohydrate metabolism" ; gene "SPAC25B8.10" ; product "trans-aconitate 3-methyltransferase (predicted)" ; EC_number "2.1.1.145" ;
chromosome1 GeneDB CDS 4172176 4172946 . + . mRNA SPAC25B8.10 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4172947 4173416 . + . mRNA SPAC25B8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.10" ; systematic_id "SPAC25B8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4173694 4174058 . + . mRNA SPAC25B8.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4174059 4176069 . + . mRNA SPAC25B8.11 ; db_xref "SPD:27/27D11" ; systematic_id "SPAC25B8.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YIR023W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC25B8.11" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB CDS 4174059 4175508 . + . mRNA SPAC25B8.11 ; colour "7" ;
chromosome1 GeneDB CDS 4175555 4176069 . + . mRNA SPAC25B8.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 4175509 4175514 . + . misc_feature unknown_3492 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4175538 4175554 . + . misc_feature unknown_3493 ; colour "6" ; note "ctaattgttttattcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4176493 4177020 . - . mRNA SPAC25B8.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.12c" ; systematic_id "SPAC25B8.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4177021 4177932 . - . mRNA SPAC25B8.12c ; db_xref "SPD:43/43E10" ; systematic_id "SPAC25B8.12c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0016791; phosphoric monoester hydrolase activity" ; colour "10" ; gene "SPAC25B8.12c" ; product "nucleotide-sugar phosphatase (predicted)" ;
chromosome1 GeneDB CDS 4177021 4177932 . - . mRNA SPAC25B8.12c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4177931 4178196 . - . mRNA SPAC25B8.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4179903 4180540 . - . mRNA SPAC25B8.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.13c" ; systematic_id "SPAC25B8.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4180541 4181734 . - . mRNA SPAC25B8.13c ; systematic_id "SPAC25B8.13c" ; colour "2" ; gene "isp7 ||| SPAC25B8.13c" ; Alias "isp7" ; db_xref "SPD:19/19A07" ; GO "GO:0031142; induction of conjugation upon nitrogen starvation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed in response to nitrogen starvation; db_xref=PMID:7954893; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Eukaryotes only; date=20100827" ; primary_name "isp7" ; product "2-OG-Fe(II) oxygenase superfamily protein" ;
chromosome1 GeneDB CDS 4180541 4181734 . - . mRNA SPAC25B8.13c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4181733 4182930 . - . mRNA SPAC25B8.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB rRNA 4184341 4184518 . - . rRNA SPRRNA.19 ; systematic_id "SPRRNA.19" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.19" ; product "5S rRNA" ; note "SPRG5SC Yeast (s.pombe) 5S rRNA gene and flanks" ;
chromosome1 GeneDB 5'-UTR 4185295 4185522 . + . mRNA SPAC25B8.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4185523 4186434 . + . mRNA SPAC25B8.14 ; systematic_id "SPAC25B8.14" ; colour "2" ; gene "mal2 ||| SPAC25B8.14" ; Alias "mal2" ; db_xref "SPD:43/43E11" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000779; condensed chromosome, pericentric region
GO:0000939; inner kinetochore of condensed chromosome
GO:0005634; nucleus
; protein binding
GO:0030702; chromatin silencing at centromere
GO:0000022; mitotic spindle elongation
GO:0034613; cellular protein localization
GO:0000070; mitotic sister chromatid segregation
GO:0000819; sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12242294; date=20070216 ||| term=orthologous to S. cerevisiae YDR318W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CENP-O ortholog; date=20100727 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; db_xref=PMID:8887647; date=20100727" ; primary_name "mal2" ; product "kinetochore protein, CENP-O ortholog Mal2" ;
chromosome1 GeneDB CDS 4185523 4186434 . + . mRNA SPAC25B8.14 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4186506 4186511 . - . mRNA SPAC25B8.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.15c" ; systematic_id "SPAC25B8.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4186512 4187225 . - . mRNA SPAC25B8.15c ; db_xref "SPD:08/08E01" ; systematic_id "SPAC25B8.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL050W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0031591; wybutosine biosynthetic process
GO:0008175; tRNA methyltransferase activity
GO:0030488; tRNA methylation" ; gene "SPAC25B8.15c" ; product "wybutosine biosynthesis protein Tyw3 (predicted)" ;
chromosome1 GeneDB CDS 4186512 4187225 . - . mRNA SPAC25B8.15c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4187224 4187272 . - . mRNA SPAC25B8.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4187325 4187546 . + . mRNA SPAC25B8.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4187547 4189643 . + . mRNA SPAC25B8.16 ; db_xref "SPD:27/27H04" ; systematic_id "SPAC25B8.16" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL221C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005655; nucleolar ribonuclease P complex
GO:0005634; nucleus
GO:0000171; ribonuclease MRP activity
GO:0004526; ribonuclease P activity
GO:0006364; rRNA processing
GO:0008033; tRNA processing
GO:0000172; ribonuclease MRP complex
GO:0006379; mRNA cleavage" ; gene "SPAC25B8.16" ; product "RNase P and RNase MRP subunit (predicted)" ;
chromosome1 GeneDB CDS 4187547 4189643 . + . mRNA SPAC25B8.16 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4189644 4189859 . + . mRNA SPAC25B8.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.16" ; systematic_id "SPAC25B8.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4190304 4190352 . + . mRNA SPAC25B8.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4190353 4191240 . + . mRNA SPAC25B8.17 ; db_xref "SPD:12/12A07" ; systematic_id "SPAC25B8.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL100C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0004175; endopeptidase activity
GO:0016021; integral to membrane" ; gene "SPAC25B8.17" ; product "peptidase family A22" ;
chromosome1 GeneDB CDS 4190353 4191240 . + . mRNA SPAC25B8.17 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4191241 4191344 . + . mRNA SPAC25B8.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.17" ; systematic_id "SPAC25B8.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4191514 4191612 . + . mRNA SPAC25B8.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4191613 4191978 . + . mRNA SPAC25B8.18 ; db_xref "SPD:02/02E10" ; systematic_id "SPAC25B8.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR049C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0009055; electron carrier activity" ; gene "SPAC25B8.18" ; product "mitochondrial electron carrier (predicted)" ;
chromosome1 GeneDB CDS 4191613 4191978 . + . mRNA SPAC25B8.18 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4191979 4192005 . + . mRNA SPAC25B8.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.18" ; systematic_id "SPAC25B8.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4192110 4192641 . - . mRNA SPAC25B8.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25B8.19c" ; systematic_id "SPAC25B8.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4192510 4193265 . + . misc_feature unknown_3494 ; note "nominal overlap with cosmid c25B8" ;
chromosome1 GeneDB CDS_parts 4192642 4194210 . - . mRNA SPAC25B8.19c ; systematic_id "SPAC25B8.19c" ; colour "7" ; gene "SPAC25B8.19c ||| SPAC683.01c" ; db_xref "SPD:33/33B12" ; synonym "SPAC683.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent" ; product "transcription factor zf-C2H2 type (predicted)" ;
chromosome1 GeneDB CDS 4192642 4194210 . - . mRNA SPAC25B8.19c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4194209 4195193 . - . mRNA SPAC25B8.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25B8.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4195642 4195959 . + . mRNA SPAC683.03 ; db_xref "SPD:51/51G03" ; systematic_id "SPAC683.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC683.03" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4195642 4195959 . + . mRNA SPAC683.03 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 4197560 4197658 . - . mRNA SPAC683.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC683.02c" ; systematic_id "SPAC683.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4197659 4198315 . - . mRNA SPAC683.02c ; db_xref "SPD:31/31G06" ; systematic_id "SPAC683.02c" ; synonym "SPAC694.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=orthologous to S. cerevisiae YNL255C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human ZCCH9C ortholog; date=20100718" ; colour "10" ; gene "SPAC683.02c ||| SPAC694.01c" ; product "zf-CCHC type zinc finger protein" ;
chromosome1 GeneDB CDS 4197659 4198315 . - . mRNA SPAC683.02c ; colour "10" ;
chromosome1 GeneDB misc_feature 4197814 4198908 . + . misc_feature unknown_3495 ; note "nominal overlap with cosmid c694" ;
chromosome1 GeneDB 5'-UTR 4198314 4198600 . - . mRNA SPAC683.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC683.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4200185 4205338 . + . mRNA SPAC694.02 ; db_xref "SPD:48/48G12" ; systematic_id "SPAC694.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=helicase C-terminal domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPAC694.02" ; product "DEAD/DEAH box helicase" ;
chromosome1 GeneDB CDS 4200185 4205338 . + . mRNA SPAC694.02 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4205339 4205538 . + . mRNA SPAC694.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC694.02" ; systematic_id "SPAC694.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4205733 4205764 . + . mRNA SPAC694.03 ; ID "SPAC694.03" ; systematic_id "SPAC694.03" ; gene "SPAC694.03" ; note "mRNA from AU009264" ;
chromosome1 GeneDB CDS_parts 4205765 4206580 . + . mRNA SPAC694.03 ; db_xref "SPD:10/10E02" ; systematic_id "SPAC694.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL047C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC694.03" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 4205765 4205870 . + . mRNA SPAC694.03 ; colour "10" ;
chromosome1 GeneDB CDS 4205937 4206580 . + . mRNA SPAC694.03 ; colour "10" ;
chromosome1 GeneDB misc_feature 4205871 4205876 . + . misc_feature unknown_3496 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4205871 4205936 . + . intron SPAC694.03 ; db_xref "SPD:10/10E02" ; systematic_id "SPAC694.03" ; gene "SPAC694.03" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4205912 4205936 . + . misc_feature unknown_3497 ; colour "6" ; note "ctaacaaagttgttatcttatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4206581 4206634 . + . mRNA SPAC694.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC694.03" ; systematic_id "SPAC694.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4206690 4206794 . - . mRNA SPAC694.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC694.04c" ; systematic_id "SPAC694.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4206795 4208112 . - . mRNA SPAC694.04c ; db_xref "SPD:44/44C05" ; systematic_id "SPAC694.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER156C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human c12orf10 ortholog; date=20100718" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC694.04c" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB CDS 4206795 4207714 . - . mRNA SPAC694.04c ; colour "10" ;
chromosome1 GeneDB CDS 4208058 4208112 . - . mRNA SPAC694.04c ; colour "10" ;
chromosome1 GeneDB misc_feature 4207715 4207734 . - . misc_feature unknown_3498 ; colour "6" ; note "ctaattattaaaatatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4208052 4208057 . - . misc_feature unknown_3499 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4208111 4208175 . - . mRNA SPAC694.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC694.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4208450 4208474 . - . mRNA SPAC694.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC694.05c" ; systematic_id "SPAC694.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4208475 4208847 . - . mRNA SPAC694.05c ; systematic_id "SPAC694.05c" ; colour "7" ; gene "rps2502 ||| rps25-2 ||| rps25 ||| SPAC694.05c" ; Alias "rps2502" ; db_xref "SPD:02/02F03" ; synonym "rps25-2 ||| rps25" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR027C and YLR333C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rps2502" ; product "40S ribosomal protein S25 (predicted)" ;
chromosome1 GeneDB CDS 4208475 4208500 . - . mRNA SPAC694.05c ; colour "7" ;
chromosome1 GeneDB CDS 4208554 4208794 . - . mRNA SPAC694.05c ; colour "7" ;
chromosome1 GeneDB CDS 4208845 4208847 . - . mRNA SPAC694.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 4208501 4208516 . - . misc_feature unknown_3500 ; colour "6" ; note "ctaacacaatttttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4208501 4208553 . - . intron SPAC694.05c ; Alias "rps2502" ; db_xref "SPD:02/02F03" ; systematic_id "SPAC694.05c" ; primary_name "rps2502" ; gene "rps2502 ||| rps25-2 ||| rps25 ||| SPAC694.05c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4208548 4208553 . - . misc_feature unknown_3501 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4208795 4208809 . - . misc_feature unknown_3502 ; colour "6" ; note "ttaacaaagaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4208839 4208844 . - . misc_feature unknown_3503 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 4209273 4209283 . - . mRNA SPAC694.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC694.06c" ; systematic_id "SPAC694.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4209284 4212343 . - . mRNA SPAC694.06c ; systematic_id "SPAC694.06c" ; colour "2" ; db_xref "SPD:47/47G10" ; Alias "mrc1" ; GO "GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000403; Y-form DNA binding
GO:0005515; protein binding
GO:0005515; protein binding
; protein binding
GO:0043539; protein serine/threonine kinase activator activity
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0031573; intra-S DNA damage checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, DNA damage checkpoint defects, S-phase; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=orthologous to S. cerevisiae YCL061C; date=19700101 ||| term=ankyrin repeat protein; qualifier=inferred from context; date=19700101 ||| term=human Claspin ortholog; db_xref=PMID:11715016; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Mediator of Replication Checkpoint; cv=name_description; date=20090729 ||| term=modification, phosphorylated; residue=T645; cv=pt_mod; db_xref=PMID:14585996; date=20090213 ||| term=target of Tel1; qualifier=phosphorylated_by; db_xref=PMID:14585996; date=19700101 ||| term=target of Rad3; qualifier=phosphorylated_by; db_xref=PMID:14585996; date=19700101 ||| term=target is Cds1; qualifier=activates; date=20100427" ; primary_name "mrc1" ; product "mediator of replication checkpoint 1" ;
chromosome1 GeneDB CDS 4209284 4212343 . - . mRNA SPAC694.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4212342 4212357 . - . mRNA SPAC694.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC694.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4212578 4212705 . - . mRNA SPAC1F7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F7.01c" ; systematic_id "SPAC1F7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4212706 4216803 . - . mRNA SPAC1F7.01c ; systematic_id "SPAC1F7.01c" ; colour "7" ; gene "spt6 ||| SPAC694.07c ||| SPAC1F7.01c" ; Alias "spt6" ; db_xref "SPD:30/30F06" ; synonym "SPAC694.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR116W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006336; DNA replication-independent nucleosome assembly
GO:0000790; nuclear chromatin
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0043486; histone exchange
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0034401; establishment or maintenance of chromatin architecture during transcription
GO:0008023; transcription elongation factor complex
GO:0005739; mitichondrion" ; primary_name "spt6" ; product "transcription elongation factor Spt6 (predicted)" ;
chromosome1 GeneDB CDS 4212706 4216803 . - . mRNA SPAC1F7.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 4216404 4216514 . + . misc_feature unknown_3504 ; note "nominal overlap with cosmid SPAC694 and cosmid SPAC1F7" ;
chromosome1 GeneDB 5'-UTR 4216802 4216863 . - . mRNA SPAC1F7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4217218 4217417 . - . mRNA SPAC1F7.02c ; ID "SPAC1F7.02c" ; db_xref "SPD:35/35H01" ; systematic_id "SPAC1F7.02c" ; gene "SPAC1F7.02c" ; note "mRNA from spc00293" ;
chromosome1 GeneDB CDS_parts 4217418 4219154 . - . mRNA SPAC1F7.02c ; systematic_id "SPAC1F7.02c" ; colour "7" ; gene "SPAC1F7.02c" ; Alias "has1" ; db_xref "SPD:35/35H01" ; GO "GO:0006364; rRNA processing
GO:0004004; ATP-dependent RNA helicase activity
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YMR290C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "has1" ; product "ATP-dependent RNA helicase Has1 (predicted)" ;
chromosome1 GeneDB CDS 4217418 4219154 . - . mRNA SPAC1F7.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4219153 4219174 . - . mRNA SPAC1F7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4219783 4220000 . + . mRNA SPAC1F7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4220001 4222133 . + . mRNA SPAC1F7.03 ; systematic_id "SPAC1F7.03" ; colour "2" ; gene "pkd2 ||| SPAC1F7.03" ; db_xref "SPD:37/37D12" ; Alias "pkd2" ; GO "GO:0030173; integral to Golgi membrane
GO:0005887; integral to plasma membrane
GO:0031520; plasma membrane of cell tip
GO:0005886; plasma membrane
GO:0005262; calcium channel activity
GO:0005515; protein binding
GO:0006874; calcium ion homeostasis
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0031505; cell wall organization
GO:0071433; fungal-type cell wall repair
GO:0017157; regulation of exocytosis
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0033157; regulation of intracellular protein transport
GO:0070509; calcium ion import
GO:0090002; establishment of protein localization to plasma membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15537393; date=19700101 ||| term=orthologous to S. cerevisiae YAL053W and YGL139W and YPL221W and YOR365C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=misc, rapidly internalised; db_xref=PMID:19543678; date=20090628" ; primary_name "pkd2" ; product "TRP-like ion channel Pkd2" ;
chromosome1 GeneDB CDS 4220001 4222133 . + . mRNA SPAC1F7.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4222134 4222365 . + . mRNA SPAC1F7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F7.03" ; systematic_id "SPAC1F7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4222624 4222647 . - . mRNA SPAC1F7.14c ; db_xref "PMID:21270388" ; systematic_id "SPAC1F7.14c" ;
chromosome1 GeneDB CDS_parts 4222648 4222893 . - . mRNA SPAC1F7.14c ; Alias "tam6" ; systematic_id "SPAC1F7.14c" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=conserved in Fungi; date=20090716 ||| term=conserved in Eukaryotes; date=20090716 ||| term=conserved in Fungi only; date=20090716 ||| term=orthologous to S. cerevisiae YDL157C; date=20090716 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; colour "10" ; primary_name "tam6" ; gene "SPAC1F7.14c" ; product "mitochondrial conserved protein" ;
chromosome1 GeneDB CDS 4222648 4222893 . - . mRNA SPAC1F7.14c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4222894 4223239 . - . mRNA SPAC1F7.14c ; db_xref "PMID:21270388" ; systematic_id "SPAC1F7.14c" ;
chromosome1 GeneDB 5'-UTR 4224081 4224179 . + . mRNA SPAC1F7.04 ; Alias "rho1" ; ID "SPAC1F7.04" ; db_xref "EMBL:D38180" ; systematic_id "SPAC1F7.04" ; gene "rho1 ||| SPAC1F7.04" ; primary_name "rho1" ;
chromosome1 GeneDB CDS_parts 4224180 4225119 . + . mRNA SPAC1F7.04 ; systematic_id "SPAC1F7.04" ; colour "2" ; gene "rho1 ||| SPAC1F7.04" ; Alias "rho1" ; db_xref "SPD:32/32B05" ; GO "GO:0000935; barrier septum
GO:0051286; cell tip
GO:0031234; extrinsic to internal side of plasma membrane
GO:0030427; site of polarized growth
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0007266; Rho protein signal transduction
GO:0060583; regulation of actin cortical patch localization
GO:0032956; regulation of actin cytoskeleton organization
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0090334; regulation of 1,3-beta-glucan biosynthetic process
GO:0032949; regulation of alpha-glucan biosynthetic process
GO:0032955; regulation of barrier septum formation
; regulation of establishment and/or maintenance of cell polarity
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0030100; regulation of endocytosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9491802; date=19700101 ||| term=orthologous to S. cerevisiae YPR165W; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=Rho family; date=19700101 ||| term=target is Pck1; db_xref=PMID:10504305; date=20100823 ||| term=target is Pck2; db_xref=PMID:10504305; date=20100823 ||| term=target of Rgf2; db_xref=PMID:16324155; date=20100823 ||| term=target of Rgf1; db_xref=PMID:16324155; date=20100823 ||| term=target of Rgf3; db_xref=PMID:15546915; date=20100823" ; primary_name "rho1" ; product "Rho family GTPase Rho1" ;
chromosome1 GeneDB CDS 4224180 4224250 . + . mRNA SPAC1F7.04 ; colour "2" ;
chromosome1 GeneDB CDS 4224582 4225119 . + . mRNA SPAC1F7.04 ; colour "2" ;
chromosome1 GeneDB intron 4224251 4224581 . + . intron SPAC1F7.04 ; Alias "rho1" ; db_xref "EMBL:D38180 ||| SPD:32/32B05" ; systematic_id "SPAC1F7.04" ; gene "rho1 ||| SPAC1F7.04" ; primary_name "rho1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB 3'-UTR 4225120 4225665 . + . mRNA SPAC1F7.04 ; Alias "rho1" ; ID "SPAC1F7.04" ; db_xref "EMBL:D38180 ||| SPD:32/32B05" ; systematic_id "SPAC1F7.04" ; gene "rho1 ||| SPAC1F7.04" ; primary_name "rho1" ;
chromosome1 GeneDB CDS_parts 4226982 4229733 . + . mRNA SPAC1F7.05 ; systematic_id "SPAC1F7.05" ; colour "2" ; gene "cdc22 ||| SPAC1F7.05" ; Alias "cdc22" ; db_xref "SPD:47/47B09" ; GO "GO:0005737; cytoplasm
GO:0005971; ribonucleoside-diphosphate reductase complex
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0004748; ribonucleoside-diphosphate reductase activity
GO:0009216; purine deoxyribonucleoside triphosphate biosynthesis
GO:0042278; purine nucleoside metabolism
GO:0009212; pyrimidine deoxyribonucleoside triphosphate biosynthesis
GO:0006213; pyrimidine nucleoside metabolism
GO:0090329; regulation of DNA-dependent DNA replication
GO:0007090; regulation of S phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8479429; date=19700101 ||| term=orthologous to S. cerevisiae YER070W and YIL066C; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; db_xref=PMID:14648198; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, promoter contains MCB; db_xref=PMID:14648198; date=20100630 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705" ; primary_name "cdc22" ; product "ribonucleoside reductase large subunit Cdc22" ; EC_number "1.17.4.1" ;
chromosome1 GeneDB CDS 4226982 4227000 . + . mRNA SPAC1F7.05 ; colour "2" ;
chromosome1 GeneDB CDS 4227317 4229733 . + . mRNA SPAC1F7.05 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4229734 4229989 . + . mRNA SPAC1F7.05 ; Alias "cdc22" ; ID "SPAC1F7.05" ; db_xref "SPD:47/47B09" ; systematic_id "SPAC1F7.05" ; primary_name "cdc22" ; gene "cdc22 ||| SPAC1F7.05" ; note "mRNA from spc05253" ;
chromosome1 GeneDB CDS_parts 4230850 4231605 . + . mRNA SPAC1F7.06 ; db_xref "SPD:09/09C08" ; systematic_id "SPAC1F7.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR533C and YPL280W and YOR391C and YMR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC1F7.06" ; product "ThiJ domain protein" ;
chromosome1 GeneDB CDS 4230850 4231605 . + . mRNA SPAC1F7.06 ; colour "10" ;
chromosome1 GeneDB misc_RNA 4231812 4232976 . + . misc_RNA SPNCRNA.243 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.243" ; synonym "SPNG821" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 4233038 4233302 . - . mRNA SPAC1F7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F7.07c" ; systematic_id "SPAC1F7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4233303 4234496 . - . mRNA SPAC1F7.07c ; systematic_id "SPAC1F7.07c" ; colour "2" ; gene "fip1 ||| SPAC1F7.07c" ; Alias "fip1" ; db_xref "SPD:19/19A08" ; GO "GO:0005381; iron ion transporter activity
GO:0005886; plasma membrane
GO:0006827; high affinity iron ion transport
GO:0033215; iron assimilation by reduction and transport
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER145C and YBR207W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100827" ; primary_name "fip1" ; product "iron permease Fip1" ;
chromosome1 GeneDB CDS 4233303 4234496 . - . mRNA SPAC1F7.07c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4234497 4234760 . - . mRNA SPAC1F7.07c ; Alias "fip1" ; ID "SPAC1F7.07c" ; systematic_id "SPAC1F7.07c" ; primary_name "fip1" ; gene "fip1 ||| SPAC1F7.07c" ; note "mRNA from spc01951" ;
chromosome1 GeneDB 5'-UTR 4235124 4235638 . + . mRNA SPAC1F7.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F7.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4235639 4237507 . + . mRNA SPAC1F7.08 ; systematic_id "SPAC1F7.08" ; colour "2" ; gene "fio1 ||| SPAC1F7.08" ; Alias "fio1" ; db_xref "SPD:46/46A07" ; GO "GO:0005886; plasma membrane
GO:0004322; ferroxidase activity
GO:0005515; protein binding
GO:0070627; ferrous iron import
GO:0033215; iron assimilation by reduction and transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR058W and YFL041W and YDR506C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "fio1" ; product "iron transport multicopper oxidase Fio1" ;
chromosome1 GeneDB CDS 4235639 4237507 . + . mRNA SPAC1F7.08 ; colour "2" ;
chromosome1 GeneDB conflict 4237225 4237225 . + . conflict unknown_3505 ; citation "[2]" ; note "Sequence provided by authors[2] does not include this base however its ommission disrupts orf SPAC1F7.08" ;
chromosome1 GeneDB 3'-UTR 4237508 4237706 . + . mRNA SPAC1F7.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F7.08" ; systematic_id "SPAC1F7.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snoRNA 4238306 4238401 . + . snoRNA SPSNORNA.14 ; Alias "snoR54b" ; systematic_id "SPSNORNA.14" ; GO "GO:0030563; snRNA 2'-O-ribose methylation guide activity
GO:0000154; rRNA modification
GO:0005730; nucleolus" ; primary_name "snoR54b" ; gene "snoR54b ||| SPSNORNA.14 ||| snR54" ; product "small nucleolar RNA snR54b" ;
chromosome1 GeneDB rRNA 4240850 4240968 . - . rRNA SPRRNA.20 ; Alias "5SrRNA" ; systematic_id "SPRRNA.20" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; primary_name "5SrRNA" ; gene "5SrRNA ||| SPRRNA.20" ; product "5S rRNA" ;
chromosome1 GeneDB 3'-UTR 4241885 4242015 . - . mRNA SPAC1F7.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F7.09c" ; systematic_id "SPAC1F7.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4242016 4243044 . - . mRNA SPAC1F7.09c ; db_xref "SPD:15/15E06" ; systematic_id "SPAC1F7.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR029W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004037; allantoicase activity
GO:0000256; allantoin catabolic process" ; gene "SPAC1F7.09c" ; product "allantoicase (predicted)" ; EC_number "3.5.3.4" ;
chromosome1 GeneDB CDS 4242016 4243044 . - . mRNA SPAC1F7.09c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4243043 4243370 . - . mRNA SPAC1F7.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F7.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4243757 4243968 . + . mRNA SPAC1F7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4243969 4244685 . + . mRNA SPAC1F7.10 ; db_xref "SPD:08/08E04" ; systematic_id "SPAC1F7.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR030C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC1F7.10" ; product "hydantoin racemase family (predicted)" ;
chromosome1 GeneDB CDS 4243969 4244685 . + . mRNA SPAC1F7.10 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4244686 4244694 . + . mRNA SPAC1F7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F7.10" ; systematic_id "SPAC1F7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4244861 4245301 . - . mRNA SPAC1F7.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F7.11c" ; systematic_id "SPAC1F7.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4245302 4247797 . - . mRNA SPAC1F7.11c ; db_xref "SPD:29/29A06" ; systematic_id "SPAC1F7.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC1F7.11c" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome1 GeneDB CDS 4245302 4247474 . - . mRNA SPAC1F7.11c ; colour "7" ;
chromosome1 GeneDB CDS 4247532 4247614 . - . mRNA SPAC1F7.11c ; colour "7" ;
chromosome1 GeneDB CDS 4247705 4247797 . - . mRNA SPAC1F7.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 4247475 4247491 . - . misc_feature unknown_3506 ; colour "2" ; note "splice branch and acceptor sequence, ctaacaataacattt ag" ;
chromosome1 GeneDB misc_feature 4247526 4247531 . - . misc_feature unknown_3507 ; colour "2" ; note "splice donor sequence, gtaagc" ;
chromosome1 GeneDB misc_feature 4247615 4247638 . - . misc_feature unknown_3508 ; colour "2" ; note "splice branch and acceptor sequence, ctaacagtaatttct tgtaaatag" ;
chromosome1 GeneDB misc_feature 4247699 4247704 . - . misc_feature unknown_3509 ; colour "2" ; note "splice donor sequence, gtaatt" ;
chromosome1 GeneDB 5'-UTR 4248768 4249065 . + . mRNA SPAC1F7.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F7.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4249066 4250088 . + . mRNA SPAC1F7.12 ; systematic_id "SPAC1F7.12" ; colour "2" ; gene "yak3 ||| SPAC1F7.12 ||| yakC ||| SPAC21E11.01" ; Alias "yak3" ; db_xref "SPD:15/15C12" ; synonym "yakC ||| SPAC21E11.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100927 ||| term=species distribution, conserved in Eukaryotes; date=20100927 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100927" ; GO "GO:0016614; oxidoreductase activity, acting on CH- OH group of donors
GO:0050235; pyridoxal 4-dehydrogenase activity" ; primary_name "yak3" ; product "aldose reductase ARK13 family YakC" ;
chromosome1 GeneDB CDS 4249066 4250088 . + . mRNA SPAC1F7.12 ; colour "2" ;
chromosome1 GeneDB misc_feature 4249851 4250800 . + . misc_feature unknown_3510 ; note "nominal overlap with cosmid SPAC1F7 and cosmid SPAC21E11" ;
chromosome1 GeneDB 3'-UTR 4250631 4250656 . - . mRNA SPAC1F7.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1F7.13c" ; systematic_id "SPAC1F7.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4250657 4251418 . - . mRNA SPAC1F7.13c ; systematic_id "SPAC1F7.13c" ; colour "7" ; gene "rpl801 ||| rpl8-1 ||| rpl18 ||| rpk5a ||| rpl2-1 ||| SPAC1F7.13c ||| SPAC21E11.02c" ; Alias "rpl801" ; db_xref "SPD:40/40A11" ; synonym "rpl8-1 ||| rpl18 ||| rpk5a ||| rpl2-1 ||| SPAC21E11.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR031C-A and YIL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0019843; rRNA binding" ; primary_name "rpl801" ; product "60S ribosomal protein L8 (predicted)" ;
chromosome1 GeneDB CDS 4250657 4251418 . - . mRNA SPAC1F7.13c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4251417 4251463 . - . mRNA SPAC1F7.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1F7.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 4251488 4251496 . - . promoter unknown_3511 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB intron 4251918 4252141 . - . intron SPAC21E11.03c ; Alias "pcr1" ; db_xref "SPD:05/05A11" ; systematic_id "SPAC21E11.03c" ; primary_name "pcr1" ; note "predicted from transcriptome adata" ;
chromosome1 GeneDB 3'-UTR 4252142 4252402 . - . mRNA SPAC21E11.03c ; Alias "pcr1" ; ID "SPAC21E11.03c" ; db_xref "SPD:05/05A11" ; systematic_id "SPAC21E11.03c" ; gene "pcr1 ||| mts2 ||| SPAC21E11.03c" ; primary_name "pcr1" ; note "predicted from transcriptome data" ;
chromosome1 GeneDB CDS_parts 4252403 4252918 . - . mRNA SPAC21E11.03c ; systematic_id "SPAC21E11.03c" ; colour "2" ; gene "pcr1 ||| mts2 ||| SPAC21E11.03c" ; Alias "pcr1" ; db_xref "SPD:05/05A11" ; synonym "mts2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=bZIP (basic leucine zipper) transcription factor family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=Atf-CREB subfamily; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=pathway, links stress-activated MAPK (Sty1) pathway to cAMP-dependent protein kinase (Pka1) pathway; db_xref=PMID:15448137; date=20090104 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:7958849; date=20090104 ||| term=subunit composition, heterodimer; cv=subunit_composition; db_xref=PMID:7958849; date=20090104 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18252721; date=20090110" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0007131; meiotic recombination
GO:0051039; positive regulation of transcription, meiotic
GO:0046982; protein heterodimerization activity
GO:0033554; cellular response to stress
GO:0003677; DNA binding
GO:0000790; nuclear chromatin
GO:0033554; cellular response to stress
GO:0006995; cellular response to nitrogen starvation
GO:0043949; regulation of cAMP-mediated signaling
GO:0035065; regulation of histone acetylation
GO:0031060; regulation of histone methylation
GO:0043565; sequence-specific DNA binding
GO:0003723; RNA binding
GO:0010843; promoter binding
GO:0010844; recombination hotspot binding
GO:0010847; regulation of chromatin assembly
GO:0010848; regulation of chromatin disassembly" ; primary_name "pcr1" ; product "transcription factor Pcr1" ;
chromosome1 GeneDB CDS 4252403 4252918 . - . mRNA SPAC21E11.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4252917 4253603 . - . mRNA SPAC21E11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC21E11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB intron 4252919 4253113 . - . intron SPAC21E11.03c ; Alias "pcr1" ; db_xref "SPD:05/05A11" ; systematic_id "SPAC21E11.03c" ; gene "pcr1 ||| mts2 ||| SPAC21E11.03c" ; primary_name "pcr1" ; note "predicted from transcriptome data" ;
chromosome1 GeneDB 5'-UTR 4254708 4254859 . + . mRNA SPAC21E11.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC21E11.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4254860 4255489 . + . mRNA SPAC21E11.04 ; systematic_id "SPAC21E11.04" ; colour "2" ; gene "ppr1 ||| SPAC21E11.04" ; note "is similar to SGD:S0007536 MPR1 not found in the S288C strain" ; Alias "ppr1" ; db_xref "SPD:07/07B11" ; GO "GO:0046941; azetidine-2-carboxylic acid acetyltransferase activity
GO:0034599; cellular response to oxidative stress
GO:0034599; cellular response to oxidative stress
GO:0006526; arginine biosynthetic processs
GO:0006562; proline catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, resistance to AZC; cv=phenotype; db_xref=PMID:12761200; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:12761200; date=20090729" ; primary_name "ppr1" ; product "L-azetidine-2-carboxylic acid acetyltransferase" ; EC_number "2.3.1.-" ;
chromosome1 GeneDB CDS 4254860 4255489 . + . mRNA SPAC21E11.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4255490 4255635 . + . mRNA SPAC21E11.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC21E11.04" ; systematic_id "SPAC21E11.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4255692 4255728 . - . mRNA SPAC21E11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC21E11.05c" ; systematic_id "SPAC21E11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4255729 4257484 . - . mRNA SPAC21E11.05c ; systematic_id "SPAC21E11.05c" ; colour "2" ; gene "cyp8 ||| SPAC21E11.05c" ; note "seq change GAGT[G]GCA" ; Alias "cyp8" ; db_xref "SPD:35/35D06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, coiled-coil; date=20091118 ||| term=warning, sequence updated; date=20060501 ||| term=warning, gene structure updated; date=20062205" ; primary_name "cyp8" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp8" ; EC_number "5.2.1.8" ;
chromosome1 GeneDB CDS 4255729 4256152 . - . mRNA SPAC21E11.05c ; colour "2" ;
chromosome1 GeneDB CDS 4256218 4257132 . - . mRNA SPAC21E11.05c ; colour "2" ;
chromosome1 GeneDB CDS 4257273 4257484 . - . mRNA SPAC21E11.05c ; colour "2" ;
chromosome1 GeneDB misc_feature 4256153 4256168 . - . misc_feature unknown_3512 ; colour "2" ; note "ctaacctgatttatag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 4256212 4256217 . - . misc_feature unknown_3513 ; colour "2" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4257133 4257146 . - . misc_feature unknown_3514 ; colour "2" ; note "ctaacatgtgttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4257267 4257272 . - . misc_feature unknown_3515 ; colour "2" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4257483 4257508 . - . mRNA SPAC21E11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC21E11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4257734 4257735 . + . mRNA SPAC21E11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC21E11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4257736 4259139 . + . mRNA SPAC21E11.06 ; systematic_id "SPAC21E11.06" ; colour "7" ; gene "tif224 ||| SPAC21E11.06" ; Alias "tif224" ; db_xref "SPD:23/23B01" ; GO "GO:0005851; eukaryotic translation initiation factor 2B complex
GO:0006413; translational initiation
GO:0003743; translation initiation factor activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, leukoencephalopathy; date=20060926 ||| term=orthologous to S. cerevisiae YGR083C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, neurological disorders; date=20060926" ; primary_name "tif224" ; product "translation initiation factor eIF2B delta subunit (predicted)" ;
chromosome1 GeneDB CDS 4257736 4259139 . + . mRNA SPAC21E11.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4259140 4259267 . + . mRNA SPAC21E11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC21E11.06" ; systematic_id "SPAC21E11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4259371 4259795 . - . misc_RNA SPNCRNA.13 ; Alias "prl13" ; db_xref "PMID:12597277 ||| EMBL:AB084825" ; systematic_id "SPNCRNA.13" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl13" ; gene "prl13 ||| SPNCRNA.13" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome1 GeneDB 5'-UTR 4259985 4260100 . + . mRNA SPAC21E11.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC21E11.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4260101 4261133 . + . mRNA SPAC21E11.07 ; systematic_id "SPAC21E11.07" ; colour "7" ; gene "SPAC21E11.07 ||| SPAC2C4.01" ; db_xref "SPD:15/15F05" ; synonym "SPAC2C4.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR122W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005759; mitochondrial matrix
GO:0016226; iron-sulfur cluster assembly" ; product "iron-sulphur cluster biogenesis protein (predicted)" ;
chromosome1 GeneDB CDS 4260101 4260295 . + . mRNA SPAC21E11.07 ; colour "7" ;
chromosome1 GeneDB CDS 4260351 4261133 . + . mRNA SPAC21E11.07 ; colour "7" ;
chromosome1 GeneDB misc_feature 4260296 4260301 . + . misc_feature unknown_3516 ; colour "2" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4260339 4260350 . + . misc_feature unknown_3517 ; colour "2" ; note "ctaacttactag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4260920 4262705 . + . misc_feature unknown_3518 ; note "nominal overlap with cosmid SPAC21E11 and cosmid SPAC2C4" ;
chromosome1 GeneDB 3'-UTR 4261134 4261207 . + . mRNA SPAC21E11.07 ; ID "SPAC21E11.07" ; db_xref "SPD:15/15F05" ; systematic_id "SPAC21E11.07" ; gene "SPAC21E11.07 ||| SPAC2C4.01" ; note "mRNA from AU011250" ;
chromosome1 GeneDB 5'-UTR 4261582 4261887 . + . mRNA SPAC21E11.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC21E11.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4261888 4263699 . + . mRNA SPAC21E11.08 ; systematic_id "SPAC21E11.08" ; colour "7" ; gene "lcb2 ||| SPAC21E11.08 ||| SPAC2C4.02" ; Alias "lcb2" ; db_xref "SPD:33/33D10" ; synonym "SPAC2C4.02" ; GO "GO:0017059; serine C-palmitoyltransferase complex
GO:0004758; serine C-palmitoyltransferase activity
GO:0030148; sphingolipid biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR062W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "lcb2" ; product "serine palmitoyltransferase Lcb2 (predicted)" ; EC_number "2.3.1.50" ;
chromosome1 GeneDB CDS 4261888 4263699 . + . mRNA SPAC21E11.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4263700 4263890 . + . mRNA SPAC21E11.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC21E11.08" ; systematic_id "SPAC21E11.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4264024 4264549 . - . mRNA SPAC2C4.03c ; systematic_id "SPAC2C4.03c" ; colour "2" ; gene "smd2 ||| cwf9 ||| SPAC2C4.03c" ; Alias "smd2" ; db_xref "SPD:05/05C07" ; synonym "cwf9" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YLR275W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005685; snRNP U1" ; primary_name "smd2" ; product "Sm snRNP core protein Smd2" ;
chromosome1 GeneDB CDS 4264024 4264152 . - . mRNA SPAC2C4.03c ; colour "2" ;
chromosome1 GeneDB CDS 4264214 4264326 . - . mRNA SPAC2C4.03c ; colour "2" ;
chromosome1 GeneDB CDS 4264387 4264487 . - . mRNA SPAC2C4.03c ; colour "2" ;
chromosome1 GeneDB CDS 4264545 4264549 . - . mRNA SPAC2C4.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 4264153 4264167 . - . misc_feature unknown_3519 ; colour "6" ; note "ctaatatattcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4264208 4264213 . - . misc_feature unknown_3520 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4264327 4264347 . - . misc_feature unknown_3521 ; colour "6" ; note "ctaatggctcttctgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4264381 4264386 . - . misc_feature unknown_3522 ; colour "6" ; note "gtatac, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4264488 4264499 . - . misc_feature unknown_3523 ; colour "6" ; note "ctaataatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4264539 4264544 . - . misc_feature unknown_3524 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4264548 4264609 . - . mRNA SPAC2C4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 4265149 4265245 . + . tRNA SPATRNASER.03 ; systematic_id "SPATRNASER.03" ; GO "GO:0005737; cytoplasm
GO:0033447; AGA codon-amino acid adaptor activity
GO:0006414; translational elongation" ; product "tRNA Serine" ; note "tRNA Ser anticodon" ;
chromosome1 GeneDB intron 4265186 4265200 . + . intron SPATRNASER.03 ; systematic_id "SPATRNASER.03" ; note "intron tRNA Ser anticodon TGA" ;
chromosome1 GeneDB tRNA 4265253 4265324 . + . tRNA SPATRNAMET.03 ; systematic_id "SPATRNAMET.03" ; GO "GO:0005737; cytoplasm
GO:0006412; translation
GO:0033425; CAT codon-amino acid adaptor activity" ; product "tRNA Methionine" ; note "tRNA Met anticodon CAT, Cove score 69.52" ;
chromosome1 GeneDB 3'-UTR 4265706 4265721 . - . mRNA SPAC2C4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2C4.04c" ; systematic_id "SPAC2C4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4265722 4266099 . - . mRNA SPAC2C4.04c ; db_xref "SPD:02/02G03" ; systematic_id "SPAC2C4.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human c2orf26 ortholog; date=20100718" ; colour "10" ; gene "SPAC2C4.04c" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB CDS 4265722 4266099 . - . mRNA SPAC2C4.04c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4266098 4266368 . - . mRNA SPAC2C4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4267080 4267112 . + . mRNA SPAC2C4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4267113 4267604 . + . mRNA SPAC2C4.05 ; db_xref "SPD:04/04F12" ; systematic_id "SPAC2C4.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR210W and YGL054C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005789; endoplasmic reticulum membrane
GO:0006886; intracellular protein transport
GO:0030134; ER to Golgi transport vesicle" ; gene "SPAC2C4.05" ; product "cornichon family protein (predicted)" ;
chromosome1 GeneDB CDS 4267113 4267233 . + . mRNA SPAC2C4.05 ; colour "7" ;
chromosome1 GeneDB CDS 4267321 4267604 . + . mRNA SPAC2C4.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 4267234 4267239 . + . misc_feature unknown_3525 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4267300 4267320 . + . misc_feature unknown_3526 ; colour "6" ; note "ctaatctttttccctatttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4267605 4268016 . + . mRNA SPAC2C4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2C4.05" ; systematic_id "SPAC2C4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4268566 4269064 . + . misc_RNA SPNCRNA.98 ; systematic_id "SPNCRNA.98" ; gene "SPNCRNA.98 ||| srp7 ||| srp" ; db_xref "EMBL:X15220 ||| RFAM:RF00017" ; Alias "srp7" ; synonym "srp" ; GO "GO:0005786; signal recognition particle (sensu Eukaryota)
GO:0005786; signal recognition particle (sensu Eukaryota)
GO:0006614; SRP-dependent cotranslational protein targeting to membrane" ; controlled_curation "term=; db_xref=PMID:1315954; date=20050412 ||| term=warning, no detectable long open reading frame; db_xref=PMID:1315954; date=20050412" ; primary_name "srp7" ; product "7SL signal recognition particle component" ;
chromosome1 GeneDB 3'-UTR 4268924 4269366 . - . mRNA SPAC2C4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2C4.06c" ; systematic_id "SPAC2C4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4269367 4270871 . - . mRNA SPAC2C4.06c ; db_xref "SPD:24/24D07" ; systematic_id "SPAC2C4.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure may be incorrect; date=20100805" ; colour "7" ; GO "GO:0008649; rRNA methyltransferase activity
GO:0031167; rRNA methylation
GO:0042254; ribosome biogenesis and assembly" ; gene "SPAC2C4.06c" ; product "rRNA methyltransferase (predicted)" ; note "splicing possibly incorrect" ;
chromosome1 GeneDB CDS 4269367 4270554 . - . mRNA SPAC2C4.06c ; colour "7" ;
chromosome1 GeneDB CDS 4270631 4270674 . - . mRNA SPAC2C4.06c ; colour "7" ;
chromosome1 GeneDB CDS 4270736 4270871 . - . mRNA SPAC2C4.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 4270555 4270572 . - . misc_feature unknown_3527 ; colour "6" ; note "ctaacctggttattgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4270675 4270696 . - . misc_feature unknown_3528 ; colour "6" ; note "ctaactttcttcttttatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4270730 4270735 . - . misc_feature unknown_3529 ; colour "6" ; note "gtaaac, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4270870 4270903 . - . mRNA SPAC2C4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4271099 4271296 . - . mRNA SPAC2C4.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2C4.07c" ; systematic_id "SPAC2C4.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4271297 4274080 . - . mRNA SPAC2C4.07c ; db_xref "SPD:47/47C04" ; systematic_id "SPAC2C4.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0003723; RNA binding
GO:0004540; ribonuclease activity
GO:0006401; RNA catabolic process" ; gene "SPAC2C4.07c" ; product "ribonuclease II (RNB) family (predicted)" ;
chromosome1 GeneDB CDS 4271297 4274080 . - . mRNA SPAC2C4.07c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4274079 4274116 . - . mRNA SPAC2C4.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4275060 4275170 . + . mRNA SPAC2C4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4275171 4275902 . + . mRNA SPAC2C4.08 ; db_xref "SPD:08/08G08" ; systematic_id "SPAC2C4.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL036W and YDR514C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0005634; nucleus" ; gene "SPAC2C4.08" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 4275171 4275902 . + . mRNA SPAC2C4.08 ; colour "10" ;
chromosome1 GeneDB CDS_parts 4276024 4276786 . + . mRNA SPAC2C4.09 ; db_xref "SPD:09/09D07" ; systematic_id "SPAC2C4.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe SPAC3H1.08c; date=19700101 ||| term=orthologous to S. cerevisiae YFL046W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC2C4.09" ; product "DUF1640 family protein" ;
chromosome1 GeneDB CDS 4276024 4276244 . + . mRNA SPAC2C4.09 ; colour "10" ;
chromosome1 GeneDB CDS 4276294 4276680 . + . mRNA SPAC2C4.09 ; colour "10" ;
chromosome1 GeneDB CDS 4276744 4276786 . + . mRNA SPAC2C4.09 ; colour "10" ;
chromosome1 GeneDB misc_feature 4276245 4276250 . + . misc_feature unknown_3530 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 4276245 4276293 . + . intron SPAC2C4.09 ; db_xref "SPD:09/09D07" ; systematic_id "SPAC2C4.09" ; gene "SPAC2C4.09" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4276280 4276293 . + . misc_feature unknown_3531 ; colour "6" ; note "ctaaccttttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4276681 4276686 . + . misc_feature unknown_3532 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4276725 4276743 . + . misc_feature unknown_3533 ; colour "6" ; note "ctaacggtattcgcttaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4276787 4276923 . + . mRNA SPAC2C4.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2C4.09" ; systematic_id "SPAC2C4.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4276923 4277152 . - . mRNA SPAC2C4.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2C4.10c" ; systematic_id "SPAC2C4.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4277153 4277774 . - . mRNA SPAC2C4.10c ; db_xref "SPD:07/07A08" ; systematic_id "SPAC2C4.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC2C4.10c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4277153 4277317 . - . mRNA SPAC2C4.10c ; colour "8" ;
chromosome1 GeneDB CDS 4277370 4277582 . - . mRNA SPAC2C4.10c ; colour "8" ;
chromosome1 GeneDB CDS 4277652 4277774 . - . mRNA SPAC2C4.10c ; colour "8" ;
chromosome1 GeneDB misc_feature 4277318 4277335 . - . misc_feature unknown_3534 ; colour "6" ; note "ttaaccaaacctatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4277364 4277369 . - . misc_feature unknown_3535 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4277583 4277602 . - . misc_feature unknown_3536 ; colour "6" ; note "ttaactgttgtaaacactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4277646 4277651 . - . misc_feature unknown_3537 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4277773 4277916 . - . mRNA SPAC2C4.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4278494 4278728 . - . mRNA SPAC2C4.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2C4.11c" ; systematic_id "SPAC2C4.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4278729 4279505 . - . mRNA SPAC2C4.11c ; systematic_id "SPAC2C4.11c" ; colour "2" ; gene "rbp28 ||| SPAC2C4.11c" ; Alias "rbp28" ; db_xref "SPD:09/09F07" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0005730; nucleolus
GO:0003723; RNA binding
GO:0000054; ribosome export from nucleus
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=KH domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR145C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "rbp28" ; product "RNA-binding protein Rbp28" ;
chromosome1 GeneDB CDS 4278729 4279405 . - . mRNA SPAC2C4.11c ; colour "2" ;
chromosome1 GeneDB CDS 4279457 4279505 . - . mRNA SPAC2C4.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4279504 4279538 . - . mRNA SPAC2C4.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4279873 4280958 . - . mRNA SPAC2C4.12c ; db_xref "SPD:43/43G05" ; systematic_id "SPAC2C4.12c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL102C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, possible gene merge, unusual domain combination; date=20100927" ; colour "7" ; GO "GO:0006388; tRNA splicing
GO:0000215; tRNA 2'-phosphotransferase activity
GO:0005634; nucleus" ; gene "SPAC2C4.12c" ; product "tRNA 2'-phosphotransferase Tpt1 (predicted)" ;
chromosome1 GeneDB CDS 4279873 4280958 . - . mRNA SPAC2C4.12c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4280957 4281433 . - . mRNA SPAC2C4.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4281433 4281492 . + . mRNA SPAC2C4.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4281493 4282092 . + . mRNA SPAC2C4.13 ; systematic_id "SPAC2C4.13" ; colour "7" ; gene "vma16 ||| SPAC2C4.13" ; Alias "vma16" ; db_xref "SPD:06/06F05" ; GO "GO:0000220; vacuolar proton-transporting V-type ATPase, V0 domain
GO:0005524; ATP binding
GO:0007035; vacuolar acidification
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vma16" ; product "V-type ATPase V0 subunit c'' (predicted)" ;
chromosome1 GeneDB CDS 4281493 4282092 . + . mRNA SPAC2C4.13 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4282093 4283363 . + . mRNA SPAC2C4.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2C4.13" ; systematic_id "SPAC2C4.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4282644 4283514 . - . mRNA SPAC2C4.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2C4.14c" ; systematic_id "SPAC2C4.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4283515 4284453 . - . mRNA SPAC2C4.14c ; systematic_id "SPAC2C4.14c" ; colour "2" ; gene "ppk11 ||| SPAC2C4.14c" ; Alias "ppk11" ; db_xref "SPD:13/13B09" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=GCK subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YDR523C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk11" ; product "PAK-related kinase Ppk11" ;
chromosome1 GeneDB CDS 4283515 4284453 . - . mRNA SPAC2C4.14c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4284452 4284516 . - . mRNA SPAC2C4.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4284849 4284917 . - . mRNA SPAC2C4.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2C4.15c" ; systematic_id "SPAC2C4.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4284918 4286201 . - . mRNA SPAC2C4.15c ; systematic_id "SPAC2C4.15c" ; colour "2" ; gene "ubx2 ||| ucp13 ||| SPAC2C4.15c" ; Alias "ubx2" ; db_xref "SPD:20/20E08" ; synonym "ucp13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; qualifier=inferred from context; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15120077; date=19700101 ||| term=orthologous to S. cerevisiae YDR330W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005515; protein binding
GO:0043130; ubiquitin binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0006511; ubiquitin-dependent protein catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus" ; primary_name "ubx2" ; product "UBX domain protein Ubx2" ;
chromosome1 GeneDB CDS 4284918 4286201 . - . mRNA SPAC2C4.15c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4286200 4286221 . - . mRNA SPAC2C4.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4286813 4287415 . - . mRNA SPAC2C4.16c ; systematic_id "SPAC2C4.16c" ; colour "7" ; gene "rps801 ||| rps8 ||| rps8-1 ||| SPAC2C4.16c" ; Alias "rps801" ; db_xref "SPD:06/06F12" ; synonym "rps8-1 ||| rps8" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL072C and YER102W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps801" ; product "40S ribosomal protein S8 (predicted)" ;
chromosome1 GeneDB CDS 4286813 4287415 . - . mRNA SPAC2C4.16c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4287414 4287431 . - . mRNA SPAC2C4.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB promoter 4287474 4287481 . - . promoter unknown_3538 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB LTR 4287575 4287933 . + . LTR unknown_3539 ; note "tf2-type LTR" ;
chromosome1 GeneDB 3'-UTR 4288205 4288400 . - . mRNA SPAC2C4.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2C4.17c" ; systematic_id "SPAC2C4.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4288401 4290923 . - . mRNA SPAC2C4.17c ; db_xref "SPD:29/29B11" ; systematic_id "SPAC2C4.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0008381; mechanically-gated ion channel activity
GO:0034220; ion transmembrane transport
GO:0016021; integral to membrane
GO:0005509; calcium ion binding" ; gene "SPAC2C4.17c" ; product "MS ion channel protein 2 (predicted)" ;
chromosome1 GeneDB CDS 4288401 4290923 . - . mRNA SPAC2C4.17c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4290922 4291667 . - . mRNA SPAC2C4.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2C4.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 4294232 4294523 . + . LTR unknown_3540 ; note "312 (+1) 2 290 TF2" ;
chromosome1 GeneDB misc_feature 4294516 4295919 . + . misc_feature unknown_3541 ; note "nominal overlap with cosmid SPAC2C4 and SPAC25G10" ;
chromosome1 GeneDB 5'-UTR 4295188 4295375 . + . mRNA SPAC25G10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25G10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4295376 4296269 . + . mRNA SPAC25G10.01 ; systematic_id "SPAC25G10.01" ; colour "10" ; gene "SPAC2C4.18 ||| SPAC25G10.01" ; Alias "SPAC2C4.18" ; db_xref "SPD:12/12B10" ; synonym "SPAC2C4.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "SPAC2C4.18" ; product "RNA-binding protein" ;
chromosome1 GeneDB CDS 4295376 4296269 . + . mRNA SPAC25G10.01 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4296936 4297128 . - . mRNA SPAC25G10.02 ; Alias "cce1" ; ID "SPAC25G10.02" ; db_xref "SPD:09/09F08" ; systematic_id "SPAC25G10.02" ; primary_name "cce1" ; gene "cce1 ||| ydc2 ||| SPAC25G10.02" ; note "mRNA from AU009952" ;
chromosome1 GeneDB CDS_parts 4297129 4297905 . - . mRNA SPAC25G10.02 ; systematic_id "SPAC25G10.02" ; colour "2" ; gene "cce1 ||| ydc2 ||| SPAC25G10.02" ; Alias "cce1" ; db_xref "SPD:09/09F08" ; synonym "ydc2" ; GO "GO:0005739; mitochondrion
GO:0003677; DNA binding
GO:0008821; crossover junction endodeoxyribonuclease activity
GO:0004520; endodeoxyribonuclease activity
GO:0006310; DNA recombination
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SAP domain; date=19700101 ||| term=orthologous to S. cerevisiae YKL011C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "cce1" ; product "mitochondrial cruciform cutting endonuclease Cce1" ; EC_number "3.1.22.4" ;
chromosome1 GeneDB CDS 4297129 4297905 . - . mRNA SPAC25G10.02 ; colour "2" ;
chromosome1 GeneDB repeat_region 4298137 4298246 . - . repeat_region unknown_3542 ; note "duplicated region in c19G12, possible ncRNA?" ;
chromosome1 GeneDB 5'-UTR 4299757 4299958 . + . mRNA SPAC25G10.03 ; Alias "zip1" ; ID "SPAC25G10.03" ; db_xref "PMID:18488015" ; systematic_id "SPAC25G10.03" ; primary_name "zip1" ; note "from Solexa transcript SPNG835" ;
chromosome1 GeneDB intron 4299959 4300021 . + . intron SPAC25G10.03 ; db_xref "PMID:18488015 ||| SPD:14/14E02" ; systematic_id "SPAC25G10.03" ; note "confirmed by transcript data" ;
chromosome1 GeneDB CDS_parts 4300066 4301058 . + . mRNA SPAC25G10.03 ; systematic_id "SPAC25G10.03" ; colour "2" ; db_xref "SPD:14/14E02" ; Alias "zip1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, ubiquitinated; db_xref=PMID:15660136; cv=pt_mod; date=20061128 ||| term=bZIP (basic leucine zipper) transcription factor family; cv=protein_family; date=20061128 ||| term=orthologous to S. cerevisiae YNL103W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15829570; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005515; protein binding
GO:0071243; cellular response to arsenic
GO:0071276; cellular response to cadmium ion
GO:0071276; cellular response to cadmium ion
GO:0070301; cellular response to hydrogen peroxide
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding" ; primary_name "zip1" ; product "transcription factor Zip1" ;
chromosome1 GeneDB CDS 4300066 4301058 . + . mRNA SPAC25G10.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4301059 4301288 . + . mRNA SPAC25G10.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25G10.03" ; systematic_id "SPAC25G10.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4301402 4303777 . - . mRNA SPAC25G10.04c ; systematic_id "SPAC25G10.04c" ; colour "2" ; gene "rec10 ||| SPAC25G10.04c ||| rec20" ; note "orthology prediction from" ; Alias "rec10" ; db_xref "SPD:33/33G11" ; synonym "rec20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR263W; db_xref=PMID:15226405; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, sumoylated; evidence=ISS; qualifier=predicted; cv=pt_mod; date=20091207" ; GO "GO:0007131; meiotic recombination
GO:0007131; meiotic recombination
GO:0051177; meiotic sister chromatid cohesion
GO:0045144; meiotic sister chromatid segregation
GO:0030999; linear element formation
GO:0030999; linear element formation
GO:0030998; linear element
GO:0051177; meiotic sister chromatid cohesion
GO:0042138; meiotic DNA double-strand break formation
GO:0042138; meiotic DNA double-strand break formation
GO:0034613; cellular protein localization" ; primary_name "rec10" ; product "meiotic recombination protein Rec10" ;
chromosome1 GeneDB CDS 4301402 4303777 . - . mRNA SPAC25G10.04c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4304356 4304688 . - . mRNA SPAC25G10.05c ; Alias "his1" ; ID "SPAC25G10.05c" ; db_xref "SPD:17/17B01" ; systematic_id "SPAC25G10.05c" ; primary_name "his1" ; gene "his1 ||| SPAC25G10.05c" ; note "mRNA from SP07830" ;
chromosome1 GeneDB CDS_parts 4304689 4305780 . - . mRNA SPAC25G10.05c ; systematic_id "SPAC25G10.05c" ; colour "2" ; gene "his1 ||| SPAC25G10.05c" ; Alias "his1" ; db_xref "SPD:17/17B01" ; GO "GO:0000105; histidine biosynthesis
GO:0003879; ATP phosphoribosyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER055C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "his1" ; product "ATP phosphoribosyltransferase" ; EC_number "2.4.2.17" ;
chromosome1 GeneDB CDS 4304689 4305569 . - . mRNA SPAC25G10.05c ; colour "2" ;
chromosome1 GeneDB CDS 4305729 4305780 . - . mRNA SPAC25G10.05c ; colour "2" ;
chromosome1 GeneDB misc_feature 4305570 4305586 . - . misc_feature unknown_3543 ; colour "2" ; note "splice branch and acceptor sequence, ctgactcatatgcat ag" ;
chromosome1 GeneDB intron 4305570 4305728 . - . intron SPAC25G10.05c ; Alias "his1" ; db_xref "SPD:17/17B01" ; systematic_id "SPAC25G10.05c" ; primary_name "his1" ; gene "his1 ||| SPAC25G10.05c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4305723 4305728 . - . misc_feature unknown_3544 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 4305781 4305811 . - . mRNA SPAC25G10.05c ; Alias "his1" ; ID "SPAC25G10.05c" ; systematic_id "SPAC25G10.05c" ; primary_name "his1" ; gene "his1 ||| SPAC25G10.05c" ; note "mRNA from SP07830" ;
chromosome1 GeneDB promoter 4305886 4305893 . + . promoter unknown_3545 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB 5'-UTR 4305949 4305970 . + . mRNA SPAC25G10.06 ; Alias "rps2801" ; ID "SPAC25G10.06" ; systematic_id "SPAC25G10.06" ; primary_name "rps2801" ; gene "rps2801 ||| rps28-1 ||| SPAC25G10.06" ; note "mRNA from AU010843" ;
chromosome1 GeneDB CDS_parts 4305971 4306326 . + . mRNA SPAC25G10.06 ; systematic_id "SPAC25G10.06" ; colour "7" ; gene "rps2801 ||| rps28-1 ||| SPAC25G10.06" ; Alias "rps2801" ; db_xref "SPD:02/02D04" ; synonym "rps28-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR167C and YLR264W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; primary_name "rps2801" ; product "40S ribosomal protein S28 (predicted)" ;
chromosome1 GeneDB CDS 4305971 4306038 . + . mRNA SPAC25G10.06 ; colour "7" ;
chromosome1 GeneDB CDS 4306188 4306326 . + . mRNA SPAC25G10.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 4306039 4306044 . + . misc_feature unknown_3546 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB intron 4306039 4306187 . + . intron SPAC25G10.06 ; Alias "rps2801" ; db_xref "SPD:02/02D04" ; systematic_id "SPAC25G10.06" ; primary_name "rps2801" ; gene "rps2801 ||| rps28-1 ||| SPAC25G10.06" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4306173 4306187 . + . misc_feature unknown_3547 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttctctgtag" ;
chromosome1 GeneDB 3'-UTR 4306327 4306399 . + . mRNA SPAC25G10.06 ; Alias "rps2801" ; ID "SPAC25G10.06" ; db_xref "SPD:02/02D04" ; systematic_id "SPAC25G10.06" ; primary_name "rps2801" ; gene "rps2801 ||| rps28-1 ||| SPAC25G10.06" ; note "mRNA from AU010843" ;
chromosome1 GeneDB CDS_parts 4306719 4309976 . - . mRNA SPAC25G10.07c ; systematic_id "SPAC25G10.07c" ; colour "2" ; gene "cut7 ||| SPAC25G10.07c" ; Alias "cut7" ; db_xref "SPD:30/30C06" ; GO "GO:0005875; microtubule associated complex
GO:0005876; spindle microtubule
GO:0005816; spindle pole body
GO:0003777; microtubule motor activity
GO:0008574; plus-end directed microtubule motor activity
GO:0005515; protein binding
GO:0007018; microtubule-based movement
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=kinesin BimC subfamily; db_xref=PMID:9490630; date=19700101 ||| term=orthologous to S. cerevisiae YBL063W and YEL061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:9490630; date=20100826 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201" ; primary_name "cut7" ; product "kinesin-like protein Cut7" ;
chromosome1 GeneDB CDS 4306719 4309976 . - . mRNA SPAC25G10.07c ; colour "2" ;
chromosome1 GeneDB CDS_parts 4310579 4312756 . + . mRNA SPAC25G10.08 ; db_xref "SPD:37/37G10" ; systematic_id "SPAC25G10.08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YOR361C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "2" ; GO "GO:0003723; RNA binding
GO:0006413; translational initiation
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0005737; cytoplasm
GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex" ; gene "SPAC25G10.08" ; product "translation initiation factor eIF3b (p84)" ;
chromosome1 GeneDB CDS 4310579 4312756 . + . mRNA SPAC25G10.08 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4312757 4312892 . + . mRNA SPAC25G10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25G10.08" ; systematic_id "SPAC25G10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4313118 4313220 . - . mRNA SPAC25G10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC25G10.09c" ; systematic_id "SPAC25G10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4313221 4318605 . - . mRNA SPAC25G10.09c ; systematic_id "SPAC25G10.09c" ; colour "7" ; gene "SPAC25G10.09c ||| SPAC27F1.01c ||| pan1" ; Alias "pan1" ; db_xref "SPD:48/48H03" ; synonym "SPAC27F1.01c" ; GO "GO:0005509; calcium ion binding
GO:0006897; endocytosis
GO:0005938; cell cortex
GO:0005634; nucleus
GO:0000147; actin cortical patch assembly
GO:0030479; actin cortical patch
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YIR006C; date=19700101 ||| term=target of Ark1/Prk1 family kinases; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pan1" ; product "actin cortical patch component, with EF hand and WH2 motif Panl (predicted)" ; reserved_name "pan1" ;
chromosome1 GeneDB CDS 4313221 4318605 . - . mRNA SPAC25G10.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 4313361 4314239 . + . misc_feature unknown_3548 ; note "nominal overlap with cosmid SPAC25G10 and cosmid SPAC27F1" ;
chromosome1 GeneDB misc_feature 4316260 4317918 . - . misc_feature SPAC25G10.09c ; db_xref "PO:phos_site ||| PMID:" ; gene "SPAC25G10.09c" ; note "31 copies of putative phosphorylation signal G[FML]Q [1-4 X QPMIVA] PQ [MR]T ||| effector Ark1/Prk1 family protein kinase" ;
chromosome1 GeneDB 5'-UTR 4318604 4318670 . - . mRNA SPAC25G10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC25G10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4319247 4319659 . - . mRNA SPAC27F1.02c ; Alias "cdc8" ; ID "SPAC27F1.02c" ; db_xref "SPD:05/05E09" ; systematic_id "SPAC27F1.02c" ; primary_name "cdc8" ; gene "cdc8 ||| fus4 ||| SPAC27F1.02c" ; note "mRNA from AU010415" ;
chromosome1 GeneDB CDS_parts 4319660 4320204 . - . mRNA SPAC27F1.02c ; systematic_id "SPAC27F1.02c" ; colour "2" ; gene "cdc8 ||| fus4 ||| SPAC27F1.02c" ; Alias "cdc8" ; db_xref "SPD:05/05E09" ; synonym "fus4" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated dumbbell; qualifier=deletion; db_xref=PMID:958201; date=20100802 ||| term=orthologous to S. cerevisiae YNL079C and YIL138C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=cofilin/tropomyosin family; date=20091118 ||| term=human TPM3 and TPM4 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=modification, acetylated; cv=pt_mod; date=20060611" ; GO "GO:0003779; actin binding
; contractile ring
; contractile ring
GO:0000915; cytokinesis, contractile ring formation
GO:0033205; cell cycle cytokinesis
GO:0032220; plasma membrane fusion during cytogamy
GO:0032432; actin cable
GO:0071519; actin filament bundle assembly involved in actomyosin contractile ring formation" ; primary_name "cdc8" ; product "tropomyosin" ;
chromosome1 GeneDB CDS 4319660 4320127 . - . mRNA SPAC27F1.02c ; colour "2" ;
chromosome1 GeneDB CDS 4320187 4320204 . - . mRNA SPAC27F1.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 4320128 4320149 . - . misc_feature unknown_3549 ; colour "2" ; note "splice branch and acceptor sequence, ctaatatttgctttt tatttag" ;
chromosome1 GeneDB misc_feature 4320181 4320186 . - . misc_feature unknown_3550 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB 5'-UTR 4320203 4320206 . - . mRNA SPAC27F1.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27F1.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4320758 4320806 . - . mRNA SPAC27F1.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27F1.03c" ; systematic_id "SPAC27F1.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4320807 4321475 . - . mRNA SPAC27F1.03c ; systematic_id "SPAC27F1.03c" ; colour "2" ; gene "SPAC27F1.03c ||| uch1" ; db_xref "SPD:42/42H03" ; Alias "uch1" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004221; ubiquitin thiolesterase activity
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR099W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human UCHL3 ortholog; date=20101001" ; primary_name "uch1" ; product "ubiquitin C-terminal hydrolase Uch1" ;
chromosome1 GeneDB CDS 4320807 4321475 . - . mRNA SPAC27F1.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4321474 4321533 . - . mRNA SPAC27F1.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27F1.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4321808 4321881 . - . mRNA SPAC27F1.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27F1.04c" ; systematic_id "SPAC27F1.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4321882 4323207 . - . mRNA SPAC27F1.04c ; systematic_id "SPAC27F1.04c" ; colour "2" ; gene "nuf2 ||| SPAC27F1.04c" ; Alias "nuf2" ; db_xref "SPD:23/23A09" ; GO "GO:0031617; NMS complex
GO:0031262; Ndc80 complex
GO:0000778; condensed nuclear chromosome kinetochore
; condensed nuclear chromosome kinetochore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0000070; mitotic sister chromatid segregation
GO:0007094; mitotic spindle checkpoint" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YOL069W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nuf2" ; product "spindle pole body protein Nuf2" ;
chromosome1 GeneDB CDS 4321882 4323207 . - . mRNA SPAC27F1.04c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4323623 4323651 . - . mRNA SPAC27F1.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27F1.05c" ; systematic_id "SPAC27F1.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4323652 4325106 . - . mRNA SPAC27F1.05c ; db_xref "SPD:23/23E01" ; systematic_id "SPAC27F1.05c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0030170; pyridoxal phosphate binding
GO:0008483; transaminase activity
GO:0033554; cellular response to stress" ; gene "SPAC27F1.05c" ; product "aminotransferase class-III, unknown specificty" ; EC_number "2.6.1.19" ;
chromosome1 GeneDB CDS 4323652 4325106 . - . mRNA SPAC27F1.05c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4325105 4325212 . - . mRNA SPAC27F1.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27F1.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4326488 4326793 . - . mRNA SPAC27F1.10 ; db_xref "SPD:51/51F10" ; systematic_id "SPAC27F1.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC27F1.10" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4326488 4326793 . - . mRNA SPAC27F1.10 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 4327249 4327282 . - . mRNA SPAC27F1.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27F1.06c" ; systematic_id "SPAC27F1.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4327283 4328371 . - . mRNA SPAC27F1.06c ; db_xref "SPD:17/17A05" ; systematic_id "SPAC27F1.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR449W and YML074C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Eukaryotes only; date=20100827 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC27F1.06c" ; product "FKBP-type peptidyl-prolyl cis-trans isomerase (predicted)" ; EC_number "5.2.1.8" ;
chromosome1 GeneDB CDS 4327283 4328371 . - . mRNA SPAC27F1.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4328372 4328451 . - . mRNA SPAC27F1.06c ; ID "SPAC27F1.06c" ; systematic_id "SPAC27F1.06c" ; gene "SPAC27F1.06c" ; note "mRNA from AU008578" ;
chromosome1 GeneDB 5'-UTR 4328953 4329103 . + . mRNA SPAC27F1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27F1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4329104 4330456 . + . mRNA SPAC27F1.07 ; systematic_id "SPAC27F1.07" ; colour "7" ; db_xref "SPD:21/21A01" ; Alias "ost1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=human RPN1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation" ; primary_name "ost1" ; product "dolichyl-diphospho-oligosaccharide-protein glycosyltransferase Ost1 (predicted)" ; EC_number "2.4.1.119" ;
chromosome1 GeneDB CDS 4329104 4330456 . + . mRNA SPAC27F1.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4330457 4330665 . + . mRNA SPAC27F1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27F1.07" ; systematic_id "SPAC27F1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4330986 4331338 . + . mRNA SPAC27F1.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27F1.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4331339 4332904 . + . mRNA SPAC27F1.08 ; systematic_id "SPAC27F1.08" ; colour "2" ; gene "pdt1 ||| SPAC27F1.08" ; Alias "pdt1" ; db_xref "SPD:25/25C05" ; GO "GO:0071421; manganese ion transmembrane transport
GO:0030026; manganese ion homeostasis
GO:0005384; manganese ion transporter activity
GO:0030176; integral to ER membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOL122C and YHR050W and YLR034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "pdt1" ; product "Nramp family manganese ion transporter" ;
chromosome1 GeneDB CDS 4331339 4332904 . + . mRNA SPAC27F1.08 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4332905 4333077 . + . mRNA SPAC27F1.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27F1.08" ; systematic_id "SPAC27F1.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4333170 4336787 . - . mRNA SPAC27F1.09c ; systematic_id "SPAC27F1.09c" ; colour "2" ; gene "prp10 ||| sap155 ||| SPAC27F1.09c" ; Alias "prp10" ; db_xref "SPD:48/48E04" ; synonym "sap155" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:9585501; date=20090213 ||| term=HEAT repeat; cv=protein_family; date=20061127 ||| term=phenotype, inviable; cv=phenotype; date=20061127 ||| term=gene expression, alternative splicing; db_xref=PMID:9837997; cv=gene_ex; date=20061127 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YMR288W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, gene structure updated; date=20100927" ; GO "GO:0005634; nucleus
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0000245; spliceosome assembly
GO:0003729; mRNA binding" ; primary_name "prp10" ; product "U2 snRNP-associated protein Sap155" ;
chromosome1 GeneDB CDS 4333170 4336555 . - . mRNA SPAC27F1.09c ; colour "2" ;
chromosome1 GeneDB CDS 4336622 4336726 . - . mRNA SPAC27F1.09c ; colour "2" ;
chromosome1 GeneDB CDS 4336778 4336787 . - . mRNA SPAC27F1.09c ; colour "2" ;
chromosome1 GeneDB intron 4336556 4336621 . - . intron unknown_3551 ; db_xref "PMID:9837997" ; note "confirmed" ;
chromosome1 GeneDB intron 4336727 4336777 . - . intron unknown_3552 ; db_xref "PMID:9837997" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 4337075 4337190 . + . misc_feature unknown_3553 ; note "nominal overlap with cosmid SPAC23D31 and cosmid SPAC27F1" ;
chromosome1 GeneDB 5'-UTR 4337097 4337247 . + . mRNA SPAC23D3.01 ; ID "SPAC23D3.01" ; systematic_id "SPAC23D3.01" ; gene "SPAC23D3.01 ||| pdp3" ; note "mRNA from AU009266" ;
chromosome1 GeneDB CDS_parts 4337248 4338471 . + . mRNA SPAC23D3.01 ; db_xref "SPD:19/19E01" ; systematic_id "SPAC23D3.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR455W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005634; nucleus
GO:0006338; chromatin remodeling
GO:0000790; nuclear chromatin
GO:0034770; histone H4-K20 methylation
GO:0035064; methylated histone residue binding" ; gene "SPAC23D3.01 ||| pdp3" ; product "PWWP domain protein, involved in chromatin remodeling (predicted)" ; reserved_name "pdp3" ;
chromosome1 GeneDB CDS 4337248 4338471 . + . mRNA SPAC23D3.01 ; colour "7" ;
chromosome1 GeneDB CDS_parts 4338742 4339816 . + . mRNA SPAC23D3.02 ; systematic_id "SPAC23D3.02" ; colour "2" ; gene "rfc2 ||| SPAC23D3.02" ; Alias "rfc2" ; db_xref "SPD:16/16F02" ; GO "GO:0005663; DNA replication factor C complex
GO:0006270; DNA replication initiation
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0031390; Ctf18 RFC-like complex
GO:0031391; Elg1 RFC-like complex
GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0003689; DNA clamp loader activity
GO:0043596; nuclear relication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=AAA family ATPase; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9862966; date=19700101 ||| term=orthologous to S. cerevisiae YJR068W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rfc2" ; product "DNA replication factor C complex subunit Rfc2" ;
chromosome1 GeneDB CDS 4338742 4338815 . + . mRNA SPAC23D3.02 ; colour "2" ;
chromosome1 GeneDB CDS 4338868 4339816 . + . mRNA SPAC23D3.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 4338816 4338821 . + . misc_feature unknown_3554 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB intron 4338816 4338867 . + . intron SPAC23D3.02 ; Alias "rfc2" ; db_xref "PMID:9862966 ||| SPD:16/16F02" ; systematic_id "SPAC23D3.02" ; primary_name "rfc2" ; gene "rfc2 ||| SPAC23D3.02" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 4338851 4338867 . + . misc_feature unknown_3555 ; colour "2" ; note "splice branch and acceptor sequence, cattaacacgtatgt ag" ;
chromosome1 GeneDB 3'-UTR 4339817 4339944 . + . mRNA SPAC23D3.02 ; Alias "rfc2" ; ID "SPAC23D3.02" ; db_xref "SPD:16/16F02" ; systematic_id "SPAC23D3.02" ; primary_name "rfc2" ; gene "rfc2 ||| SPAC23D3.02" ; note "mRNA from AU011152" ;
chromosome1 GeneDB 3'-UTR 4340057 4340145 . - . mRNA SPAC23D3.03c ; ID "SPAC23D3.03c" ; db_xref "SPD:44/44E08" ; systematic_id "SPAC23D3.03c" ; gene "SPAC23D3.03c" ; note "mRNA from AU011120" ;
chromosome1 GeneDB CDS_parts 4340146 4341564 . - . mRNA SPAC23D3.03c ; db_xref "SPD:44/44E08" ; systematic_id "SPAC23D3.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TBC1D12 and TBC1D14 ortholog; date=20100908" ; colour "7" ; GO "GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; gene "SPAC23D3.03c" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB CDS 4340146 4341564 . - . mRNA SPAC23D3.03c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4341563 4342048 . - . mRNA SPAC23D3.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23D3.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4342209 4342486 . - . mRNA SPAC23D3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23D3.04c" ; systematic_id "SPAC23D3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4342487 4343608 . - . mRNA SPAC23D3.04c ; systematic_id "SPAC23D3.04c" ; colour "2" ; gene "gpd2 ||| SPAC23D3.04c" ; Alias "gpd2" ; db_xref "SPD:17/17F06" ; GO "GO:0005737; cytoplasm
GO:0004367; glycerol-3-phosphate dehydrogenase (NAD+) activity
GO:0006116; NADH oxidation
GO:0006114; glycerol biosynthesis
GO:0051287; NAD or NADPH binding
GO:0046168; glycerol-3-phosphate catabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "gpd2" ; product "glycerol-3-phosphate dehydrogenase Gpd2" ; EC_number "1.1.1.8" ;
chromosome1 GeneDB CDS 4342487 4343608 . - . mRNA SPAC23D3.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4343607 4344025 . - . mRNA SPAC23D3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23D3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4344572 4344751 . - . mRNA SPAC23D3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23D3.05c" ; systematic_id "SPAC23D3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4344752 4345774 . - . mRNA SPAC23D3.05c ; systematic_id "SPAC23D3.05c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC23D3.05c" ; product "alcohol dehydrogenase pseudogene" ; note "shows stress induced expression on microarray, but has 4 frameshifts" ;
chromosome1 GeneDB CDS 4344752 4345774 . - . mRNA SPAC23D3.05c ; colour "13" ;
chromosome1 GeneDB 5'-UTR 4345773 4346170 . - . mRNA SPAC23D3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23D3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4346557 4346601 . - . mRNA SPAC23D3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23D3.06c" ; systematic_id "SPAC23D3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4346602 4350620 . - . mRNA SPAC23D3.06c ; systematic_id "SPAC23D3.06c" ; colour "2" ; gene "nup146 ||| SPAC23D3.06c" ; Alias "nup146" ; db_xref "SPD:48/48F08" ; GO "; nuclear membrane
GO:0005643; nuclear pore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051301; cell division
GO:0006913; nucleocytoplasmic transport
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=FG repeat; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL115C and YDR192C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nup146" ; product "nucleoporin Nup146" ;
chromosome1 GeneDB CDS 4346602 4350480 . - . mRNA SPAC23D3.06c ; colour "2" ;
chromosome1 GeneDB CDS 4350522 4350620 . - . mRNA SPAC23D3.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 4350481 4350498 . - . misc_feature unknown_3556 ; colour "2" ; note "splice branch and acceptor sequence, tattaacttttcttg cag" ;
chromosome1 GeneDB misc_feature 4350516 4350521 . - . misc_feature unknown_3557 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB 5'-UTR 4350619 4350842 . - . mRNA SPAC23D3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23D3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4351008 4351017 . + . mRNA SPAC23D3.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23D3.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4351018 4351934 . + . mRNA SPAC23D3.07 ; systematic_id "SPAC23D3.07" ; colour "7" ; gene "SPAC23D3.07 ||| pup1" ; Alias "pup1" ; db_xref "SPD:12/12G03" ; GO "GO:0005634; nucleus
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR157C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "pup1" ; product "20S proteasome component beta 2 (predicted)" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB CDS 4351018 4351067 . + . mRNA SPAC23D3.07 ; colour "7" ;
chromosome1 GeneDB CDS 4351133 4351278 . + . mRNA SPAC23D3.07 ; colour "7" ;
chromosome1 GeneDB CDS 4351327 4351934 . + . mRNA SPAC23D3.07 ; colour "7" ;
chromosome1 GeneDB misc_feature 4351068 4351073 . + . misc_feature unknown_3558 ; colour "2" ; note "splice donor sequence, gtaagg" ;
chromosome1 GeneDB misc_feature 4351114 4351132 . + . misc_feature unknown_3559 ; colour "2" ; note "splice branch and acceptor sequence, tattaacgactcaca atag" ;
chromosome1 GeneDB misc_feature 4351279 4351284 . + . misc_feature unknown_3560 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 4351314 4351326 . + . misc_feature unknown_3561 ; colour "2" ; note "splice branch and acceptor sequence, ctgaccttagaag" ;
chromosome1 GeneDB 3'-UTR 4351935 4352369 . + . mRNA SPAC23D3.07 ; ID "SPAC23D3.07" ; db_xref "SPD:12/12G03" ; systematic_id "SPAC23D3.07" ; gene "SPAC23D3.07 ||| pup1" ; note "mRNA from SPAB540" ;
chromosome1 GeneDB CDS_parts 4352514 4353577 . + . mRNA SPAC23D3.08 ; systematic_id "SPAC23D3.08" ; colour "2" ; gene "usp108 ||| SPAC23D3.08" ; Alias "usp108" ; db_xref "SPD:19/19H07" ; GO "GO:0005685; snRNP U1
GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17264129; date=20070201 ||| term=KH domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; date=20070502" ; primary_name "usp108" ; product "U1 snRNP-associated protein Usp108" ;
chromosome1 GeneDB CDS 4352514 4353359 . + . mRNA SPAC23D3.08 ; colour "2" ;
chromosome1 GeneDB CDS 4353410 4353577 . + . mRNA SPAC23D3.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 4353360 4353365 . + . misc_feature unknown_3562 ; colour "2" ; note "splice donor sequence, gtaagc" ;
chromosome1 GeneDB misc_feature 4353390 4353409 . + . misc_feature unknown_3563 ; colour "2" ; note "splice branch and acceptor sequence, tactaactatattgt tctag" ;
chromosome1 GeneDB 3'-UTR 4353704 4353825 . - . mRNA SPAC23D3.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23D3.09" ; systematic_id "SPAC23D3.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4353826 4355118 . - . mRNA SPAC23D3.09 ; systematic_id "SPAC23D3.09" ; colour "2" ; gene "arp42 ||| arp4 ||| SPAC23D3.09" ; Alias "arp42" ; db_xref "SPD:22/22D12" ; synonym "arp4" ; GO "GO:0016586; RSC complex
GO:0016514; SWI/SNF complex
GO:0006338; chromatin remodeling
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0010551; regulation of specific transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL081C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to Brefeldin A; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706" ; primary_name "arp42" ; product "SWI/SNF and RSC complex subunit Arp42" ;
chromosome1 GeneDB CDS 4353826 4355118 . - . mRNA SPAC23D3.09 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4355117 4355246 . - . mRNA SPAC23D3.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23D3.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4355627 4355702 . - . mRNA SPAC23D3.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23D3.10c" ; systematic_id "SPAC23D3.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4355703 4357823 . - . mRNA SPAC23D3.10c ; systematic_id "SPAC23D3.10c" ; colour "2" ; gene "eng2 ||| SPAC23D3.10c" ; Alias "eng2" ; db_xref "SPD:46/46E09" ; GO "GO:0072317; beta-glucan catabolic process involved in ascospore release from ascus
GO:0072324; ascus epiplasm
GO:0042973; glucan endo-1,3-beta-D-glucosidase activity
GO:0016998; cell wall catabolism
GO:0031505; fungal-type cell wall organization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR067C and YLR144C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=gene expression, expressed during meiosis; date=20101111" ; primary_name "eng2" ; product "endo-1,3-beta-glucanase Eng2" ; EC_number "3.2.1.39" ;
chromosome1 GeneDB CDS 4355703 4357823 . - . mRNA SPAC23D3.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4357822 4358162 . - . mRNA SPAC23D3.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23D3.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4358824 4358848 . + . mRNA SPAC23D3.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC23D3.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4358849 4359739 . + . mRNA SPAC23D3.11 ; systematic_id "SPAC23D3.11" ; colour "7" ; gene "SPAC23D3.11 ||| ayr1" ; Alias "ayr1" ; db_xref "SPD:12/12B01" ; GO "GO:0006654; phosphatidic acid biosynthesis
GO:0000140; acylglycerone-phosphate reductase activity
GO:0005783; endoplasmic reticulum
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL124W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ayr1" ; product "1-acyldihydroxyacetone phosphate reductase (predicted)" ; EC_number "1.1.1.101" ;
chromosome1 GeneDB CDS 4358849 4359739 . + . mRNA SPAC23D3.11 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4359740 4359978 . + . mRNA SPAC23D3.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23D3.11" ; systematic_id "SPAC23D3.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4360504 4362103 . + . misc_RNA SPNCRNA.244 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.244" ; synonym "SPNG841" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 4362493 4362900 . + . mRNA SPAC23D3.12 ; ID "SPAC23D3.12" ; systematic_id "SPAC23D3.12" ; gene "SPAC23D3.12" ; note "mRNA from AU006988" ;
chromosome1 GeneDB CDS_parts 4362901 4364580 . + . mRNA SPAC23D3.12 ; db_xref "SPD:35/35B05" ; systematic_id "SPAC23D3.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML123C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0005315; inorganic phosphate transporter activity
GO:0035435; phosphate transmembrane transport" ; gene "SPAC23D3.12" ; product "inorganic phosphate transporter (predicted)" ;
chromosome1 GeneDB CDS 4362901 4364580 . + . mRNA SPAC23D3.12 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4364581 4364980 . + . mRNA SPAC23D3.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC23D3.12" ; systematic_id "SPAC23D3.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4365700 4365852 . + . mRNA SPAC23D3.16 ; db_xref "PMID:18488015" ; systematic_id "SPAC23D3.16" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "8" ; gene "SPAC23D3.16" ; product "sequence orphan" ; note "intron from Solexa transread data" ;
chromosome1 GeneDB CDS 4365700 4365734 . + . mRNA SPAC23D3.16 ; colour "8" ;
chromosome1 GeneDB CDS 4365789 4365852 . + . mRNA SPAC23D3.16 ; colour "8" ;
chromosome1 GeneDB intron 4365735 4365788 . + . intron SPAC23D3.16 ; systematic_id "SPAC23D3.16" ; gene "SPAC23D3.16" ; note "confirmed by Solexa transread data PMID:18488015" ;
chromosome1 GeneDB 3'-UTR 4366000 4366508 . - . mRNA SPAC23D3.17 ; ID "SPAC23D3.17" ; obsolete_name "SPNCRNA.245" ; db_xref "PMID:18488015" ; systematic_id "SPAC23D3.17" ; synonym "SPNG842 ||| SPNGAF47" ; gene "SPAC23D3.17" ; note "predicted from Solexa sequence" ;
chromosome1 GeneDB CDS_parts 4366509 4366753 . - . mRNA SPAC23D3.17 ; db_xref "PMID:18488015" ; systematic_id "SPAC23D3.17" ; controlled_curation "term=species distribution, no apparent S. cerevisiae ortholog; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "10" ; gene "SPAC23D3.17" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 4366509 4366563 . - . mRNA SPAC23D3.17 ; colour "10" ;
chromosome1 GeneDB CDS 4366611 4366753 . - . mRNA SPAC23D3.17 ; colour "10" ;
chromosome1 GeneDB intron 4366563 4366610 . - . intron SPAC23D3.17 ; systematic_id "SPAC23D3.17" ; gene "SPAC23D3.17" ; note "confirmed by Solexa transread data PMID:18488015" ;
chromosome1 GeneDB 3'-UTR 4367585 4367706 . - . mRNA SPAC23D3.13c ; ID "SPAC23D3.13c" ; db_xref "SPD:31/31A10" ; systematic_id "SPAC23D3.13c" ; gene "SPAC23D3.13c" ; note "mRNA from AU013116" ;
chromosome1 GeneDB CDS_parts 4367707 4372712 . - . mRNA SPAC23D3.13c ; db_xref "SPD:31/31A10" ; systematic_id "SPAC23D3.13c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YNL297C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005768; endosome
GO:0006897; endocytosis
GO:0006886; intracellular protein transport
GO:0005085; guanyl-nucleotide exchange factor activity
GO:0006623; protein targeting to vacuole" ; gene "SPAC23D3.13c" ; product "guanyl-nucleotide exchange factor (predicted)" ;
chromosome1 GeneDB CDS 4367707 4372284 . - . mRNA SPAC23D3.13c ; colour "7" ;
chromosome1 GeneDB CDS 4372347 4372471 . - . mRNA SPAC23D3.13c ; colour "7" ;
chromosome1 GeneDB CDS 4372524 4372590 . - . mRNA SPAC23D3.13c ; colour "7" ;
chromosome1 GeneDB CDS 4372632 4372712 . - . mRNA SPAC23D3.13c ; colour "7" ;
chromosome1 GeneDB misc_feature 4372285 4372302 . - . misc_feature unknown_3564 ; colour "2" ; note "splice branch and acceptor sequence, ttctaacaatgttac tag" ;
chromosome1 GeneDB misc_feature 4372341 4372346 . - . misc_feature unknown_3565 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 4372472 4372488 . - . misc_feature unknown_3566 ; colour "2" ; note "splice branch and acceptor sequence, tactaatcatttcac ag" ;
chromosome1 GeneDB misc_feature 4372518 4372523 . - . misc_feature unknown_3567 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 4372591 4372604 . - . misc_feature unknown_3568 ; colour "2" ; note "splice branch and acceptor sequence, ctaacaactttag" ;
chromosome1 GeneDB misc_feature 4372626 4372631 . - . misc_feature unknown_3569 ; colour "2" ; note "splice donor sequence, gtaaat" ;
chromosome1 GeneDB CDS_parts 4373039 4374987 . - . mRNA SPAC23D3.14c ; systematic_id "SPAC23D3.14c" ; colour "7" ; gene "aah2 ||| SPAC23D3.14c" ; Alias "aah2" ; db_xref "SPD:37/37A12" ; GO "GO:0009986; cell surface
GO:0009897; external side of plasma membrane
GO:0004556; alpha-amylase activity
GO:0008360; regulation of cell shape
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=modification, glycosylated; qualifier=N-linked; cv=pt_mod; date=20060611 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060611 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "aah2" ; product "alpha-amylase homolog Aah2 (predicted)" ; EC_number "3.2.1.1" ;
chromosome1 GeneDB CDS 4373039 4373326 . - . mRNA SPAC23D3.14c ; colour "7" ;
chromosome1 GeneDB CDS 4373371 4374258 . - . mRNA SPAC23D3.14c ; colour "7" ;
chromosome1 GeneDB CDS 4374377 4374691 . - . mRNA SPAC23D3.14c ; colour "7" ;
chromosome1 GeneDB CDS 4374733 4374987 . - . mRNA SPAC23D3.14c ; colour "7" ;
chromosome1 GeneDB misc_feature 4373327 4373344 . - . misc_feature unknown_3570 ; colour "2" ; note "splice branch and acceptor sequence, tactaacgttcatta aag" ;
chromosome1 GeneDB misc_feature 4373365 4373370 . - . misc_feature unknown_3571 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 4374259 4374275 . - . misc_feature unknown_3572 ; colour "2" ; note "splice branch and acceptor sequence, ctaactatatgatat ag" ;
chromosome1 GeneDB misc_feature 4374371 4374376 . - . misc_feature unknown_3573 ; colour "2" ; note "splice donor sequence, gtatgc" ;
chromosome1 GeneDB 5'-UTR 4374384 4375498 . + . mRNA SPAC1527.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1527.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4374692 4374705 . - . misc_feature unknown_3574 ; colour "2" ; note "splice branch and acceptor sequence, ttaacataatgatag" ;
chromosome1 GeneDB misc_feature 4374727 4374732 . - . misc_feature unknown_3575 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB CDS_parts 4375499 4382692 . + . mRNA SPAC1527.01 ; systematic_id "SPAC1527.01" ; colour "2" ; gene "mok11 ||| SPAC23D3.15 ||| SPAC1527.01" ; Alias "mok11" ; db_xref "SPD:34/34B10" ; synonym "SPAC23D3.15" ; GO "GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0031233; intrinsic to external side of plasma membrane
GO:0030979; alpha-glucan biosynthesis
GO:0047657; alpha-1,3-glucan synthase activity
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20070309 ||| term=similar to S. pombe Mok1 and Mok12 and Mok13 and Mok14; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:16420355; date=20080430 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mok11" ; product "alpha-1,3-glucan synthase Mok11" ; EC_number "2.4.1.183" ;
chromosome1 GeneDB CDS 4375499 4382692 . + . mRNA SPAC1527.01 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4382693 4382741 . + . mRNA SPAC1527.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1527.01" ; systematic_id "SPAC1527.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4383186 4383202 . + . mRNA SPAC1527.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1527.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4383203 4384017 . + . mRNA SPAC1527.02 ; systematic_id "SPAC1527.02" ; colour "7" ; gene "sft2 ||| SPAC1527.02" ; Alias "sft2" ; db_xref "SPD:10/10D12" ; GO "GO:0006886; intracellular protein transport
GO:0006895; Golgi to endosome transport
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL102W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sft2" ; product "Golgi transport protein Sft2 (predicted)" ;
chromosome1 GeneDB CDS 4383203 4383211 . + . mRNA SPAC1527.02 ; colour "7" ;
chromosome1 GeneDB CDS 4383265 4383593 . + . mRNA SPAC1527.02 ; colour "7" ;
chromosome1 GeneDB CDS 4383750 4384017 . + . mRNA SPAC1527.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 4383212 4383217 . + . misc_feature unknown_3576 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome1 GeneDB intron 4383212 4383264 . + . intron SPAC1527.02 ; Alias "sft2" ; db_xref "SPD:10/10D12" ; systematic_id "SPAC1527.02" ; primary_name "sft2" ; gene "sft2 ||| SPAC1527.02" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4383248 4383264 . + . misc_feature unknown_3577 ; colour "6" ; note "ttaactagactatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4383594 4383599 . + . misc_feature unknown_3578 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 4383594 4383749 . + . intron SPAC1527.02 ; Alias "sft2" ; db_xref "SPD:10/10D12" ; systematic_id "SPAC1527.02" ; primary_name "sft2" ; gene "sft2 ||| SPAC1527.02" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4383733 4383749 . + . misc_feature unknown_3579 ; colour "6" ; note "ctaacttatttctttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4384018 4384239 . + . mRNA SPAC1527.02 ; Alias "sft2" ; ID "SPAC1527.02" ; db_xref "SPD:10/10D12" ; systematic_id "SPAC1527.02" ; primary_name "sft2" ; gene "sft2 ||| SPAC1527.02" ; note "mRNA from SPU97399" ;
chromosome1 GeneDB 5'-UTR 4384450 4384658 . + . mRNA SPAC1527.03 ; ID "SPAC1527.03" ; systematic_id "SPAC1527.03" ; gene "SPAC1527.03" ; note "mRNA from AU009887" ;
chromosome1 GeneDB CDS_parts 4384659 4386086 . + . mRNA SPAC1527.03 ; db_xref "SPD:21/21H12" ; systematic_id "SPAC1527.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL037C and YDR515W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0005844; polysome
GO:0006412; translation
GO:0005737; cytoplasm" ; gene "SPAC1527.03" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB CDS 4384659 4386086 . + . mRNA SPAC1527.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4386087 4386371 . + . mRNA SPAC1527.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1527.03" ; systematic_id "SPAC1527.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4386956 4392424 . - . mRNA SPAC30.01c ; systematic_id "SPAC30.01c" ; colour "2" ; db_xref "SPD:48/48H05" ; obsolete_name "sec702" ; Alias "sec72" ; synonym "sec7b" ; GO "GO:0005798; Golgi-associated vesicle
GO:0005086; ARF guanyl-nucleotide exchange factor activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0005938; cell cortex
GO:0005635; nuclear envelope
GO:0000137; Golgi cis cisterna
GO:0000138; Golgi trans cisterna" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YDR170C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "sec72" ; product "Sec7 domain protein, ARF GEF Sec72" ;
chromosome1 GeneDB CDS 4386956 4392424 . - . mRNA SPAC30.01c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4392423 4392480 . - . mRNA SPAC30.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4392813 4392898 . - . mRNA SPAC30.02c ; ID "SPAC30.02c" ; db_xref "SPD:14/14D09" ; systematic_id "SPAC30.02c" ; gene "SPAC30.02c" ; note "mRNA from AU011189" ;
chromosome1 GeneDB CDS_parts 4392899 4393889 . - . mRNA SPAC30.02c ; db_xref "SPD:14/14D09" ; systematic_id "SPAC30.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0003682; chromatin binding
GO:0006400; tRNA modification" ; gene "SPAC30.02c" ; product "elongator complex associated protein Kti2 (predicted)" ;
chromosome1 GeneDB CDS 4392899 4393572 . - . mRNA SPAC30.02c ; colour "7" ;
chromosome1 GeneDB CDS 4393718 4393889 . - . mRNA SPAC30.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 4393573 4393586 . - . misc_feature unknown_3580 ; colour "6" ; note "ctaatttgtcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4393712 4393717 . - . misc_feature unknown_3581 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4393888 4393963 . - . mRNA SPAC30.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4394376 4394706 . - . mRNA SPAC30.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30.03c" ; systematic_id "SPAC30.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4394707 4395592 . - . mRNA SPAC30.03c ; systematic_id "SPAC30.03c" ; colour "2" ; gene "tsn1 ||| SPAC30.03c ||| mug90" ; Alias "tsn1" ; db_xref "SPD:43/43E06" ; synonym "tsn ||| mug90" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=subunit composition, octomeric; cv=subunit_composition; db_xref=PMID:16043634; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=DNA binding specificity, binds d(GT)n; db_xref=PMID:16043634; date=19700101 ||| term=DNA binding specificity, binds d(GTT)n; db_xref=PMID:16043634; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:18062930; date=20080829 ||| term=gene expression, post transcriptional regulation of Tsn1 expression; db_xref=PMID:18062930; date=20080829 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0043047; single-stranded telomeric DNA binding
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0005634; nucleus
GO:0000724; double-strand break repair via homologous recombination
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0006259; DNA metabolic process" ; primary_name "tsn1" ; product "translin" ;
chromosome1 GeneDB CDS 4394707 4394741 . - . mRNA SPAC30.03c ; colour "2" ;
chromosome1 GeneDB CDS 4394799 4394967 . - . mRNA SPAC30.03c ; colour "2" ;
chromosome1 GeneDB CDS 4395010 4395092 . - . mRNA SPAC30.03c ; colour "2" ;
chromosome1 GeneDB CDS 4395131 4395367 . - . mRNA SPAC30.03c ; colour "2" ;
chromosome1 GeneDB CDS 4395416 4395491 . - . mRNA SPAC30.03c ; colour "2" ;
chromosome1 GeneDB CDS 4395530 4395592 . - . mRNA SPAC30.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 4394742 4394754 . - . misc_feature unknown_3582 ; colour "6" ; note "ctgacatatgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4394793 4394798 . - . misc_feature unknown_3583 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4394968 4394983 . - . misc_feature unknown_3584 ; colour "6" ; note "ttgacacaatttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4395004 4395009 . - . misc_feature unknown_3585 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4395093 4395106 . - . misc_feature unknown_3586 ; colour "6" ; note "ctcacaatcttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4395125 4395130 . - . misc_feature unknown_3587 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4395492 4395503 . - . misc_feature unknown_3588 ; colour "6" ; note "ctaacattacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4395524 4395529 . - . misc_feature unknown_3589 ; colour "6" ; note "gtacta, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4395591 4395639 . - . mRNA SPAC30.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4395836 4395931 . - . mRNA SPAC30.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30.04c" ; systematic_id "SPAC30.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4395932 4400341 . - . mRNA SPAC30.04c ; systematic_id "SPAC30.04c" ; colour "2" ; gene "abc4 ||| SPAC30.04c" ; Alias "abc4" ; db_xref "SPD:30/30H01" ; GO "GO:0071996; glutathione import into vacuole
GO:0000329; vacuolar membrane
GO:0071997; glutathione S-conjugate transporting ATPase activity
GO:0005524; ATP binding
GO:0071276; cellular response to cadmium ion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=MDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YLL048C and YDR135C and YLL015W and YHL035C and YGR281W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "abc4" ; product "glutathione S-conjugate-exporting ATPase Abc4" ;
chromosome1 GeneDB CDS 4395932 4400341 . - . mRNA SPAC30.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4400340 4400452 . - . mRNA SPAC30.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4400686 4401605 . + . misc_RNA SPNCRNA.246 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.246" ; synonym "SPNG844" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 4401827 4402016 . + . mRNA SPAC29E6.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29E6.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4402017 4403663 . + . mRNA SPAC29E6.01 ; systematic_id "SPAC29E6.01" ; colour "2" ; gene "pof11 ||| SPAC30.05 ||| SPAC29E6.01 ||| mug156" ; Alias "pof11" ; db_xref "SPD:34/34F01" ; synonym "SPAC30.05 ||| mug156" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0016567; protein ubiquitination
GO:0005515; protein binding" ; primary_name "pof11" ; product "F-box protein Pof11" ;
chromosome1 GeneDB CDS 4402017 4402143 . + . mRNA SPAC29E6.01 ; colour "2" ;
chromosome1 GeneDB CDS 4402219 4402313 . + . mRNA SPAC29E6.01 ; colour "2" ;
chromosome1 GeneDB CDS 4402365 4403663 . + . mRNA SPAC29E6.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 4402144 4402149 . + . misc_feature unknown_3590 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4402205 4402218 . + . misc_feature unknown_3591 ; colour "6" ; note "ctaatataaagaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4402314 4402319 . + . misc_feature unknown_3592 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4402346 4402364 . + . misc_feature unknown_3593 ; colour "6" ; note "ctaatatccgttaatgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4403664 4403700 . + . mRNA SPAC29E6.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29E6.01" ; systematic_id "SPAC29E6.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4403918 4404086 . + . mRNA SPAC29E6.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29E6.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4404087 4405936 . + . mRNA SPAC29E6.02 ; systematic_id "SPAC29E6.02" ; colour "7" ; gene "prp3 ||| SPAC30.06 ||| SPAC29E6.02" ; Alias "prp3" ; db_xref "SPD:26/26B11" ; synonym "SPAC30.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR473C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "prp3" ; product "U4/U6 x U5 tri-snRNP complex subunit Prp3 (predicted)" ;
chromosome1 GeneDB CDS 4404087 4404167 . + . mRNA SPAC29E6.02 ; colour "7" ;
chromosome1 GeneDB CDS 4404218 4404376 . + . mRNA SPAC29E6.02 ; colour "7" ;
chromosome1 GeneDB CDS 4404423 4405082 . + . mRNA SPAC29E6.02 ; colour "7" ;
chromosome1 GeneDB CDS 4405125 4405435 . + . mRNA SPAC29E6.02 ; colour "7" ;
chromosome1 GeneDB CDS 4405519 4405936 . + . mRNA SPAC29E6.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 4404168 4404173 . + . misc_feature unknown_3594 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4404204 4404217 . + . misc_feature unknown_3595 ; colour "6" ; note "ctaattcaatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4404377 4404382 . + . misc_feature unknown_3596 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4404409 4404422 . + . misc_feature unknown_3597 ; colour "6" ; note "ctaatcgtttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4405083 4405088 . + . misc_feature unknown_3598 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4405110 4405124 . + . misc_feature unknown_3599 ; colour "6" ; note "ctgattattttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4405436 4405441 . + . misc_feature unknown_3600 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4405506 4405518 . + . misc_feature unknown_3601 ; colour "6" ; note "ctaacttatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4405890 4405910 . - . misc_feature unknown_3602 ; colour "6" ; note "ctaacatccaaaaatgctcag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 4405990 4409338 . - . mRNA SPAC29E6.03c ; systematic_id "SPAC29E6.03c" ; colour "7" ; db_xref "SPD:48/48D02" ; Alias "uso1" ; synonym "SPAC30.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=armadillo repeat protein; qualifier=inferred from context; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YDL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030134; ER to Golgi transport vesicle membrane
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0035493; SNARE complex assembly" ; primary_name "uso1" ; product "ER to Golgi tethering factor Uso1 (predicted)" ;
chromosome1 GeneDB CDS 4405990 4407375 . - . mRNA SPAC29E6.03c ; colour "7" ;
chromosome1 GeneDB CDS 4407447 4409096 . - . mRNA SPAC29E6.03c ; colour "7" ;
chromosome1 GeneDB CDS 4409171 4409338 . - . mRNA SPAC29E6.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 4407292 4407308 . - . misc_feature unknown_3603 ; colour "6" ; note "ttgacgaagcacaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4407441 4407446 . - . misc_feature unknown_3604 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4409097 4409109 . - . misc_feature unknown_3605 ; colour "6" ; note "ctaacaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4409165 4409170 . - . misc_feature unknown_3606 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 4409773 4410391 . + . mRNA SPAC29E6.04 ; systematic_id "SPAC29E6.04" ; colour "2" ; gene "nnf1 ||| SPAC30.08 ||| SPAC29E6.04" ; note "extra G at 4410193" ; Alias "nnf1" ; db_xref "SPD:03/03G04" ; synonym "SPAC30.08" ; GO "GO:0000818; MIND complex
GO:0031617; NMS complex
GO:0000779; condensed chromosome, pericentric region
GO:0005634; nucleus
GO:0000070; mitotic sister chromatid segregation
GO:0019236; response to pheromone
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:17035632; date=20090202 ||| term=warning, frameshifted; date=20090202 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; primary_name "nnf1" ; product "kinetochore protein Nnf1" ;
chromosome1 GeneDB CDS 4409773 4410192 . + . mRNA SPAC29E6.04 ; colour "2" ;
chromosome1 GeneDB CDS 4410194 4410391 . + . mRNA SPAC29E6.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4410354 4410604 . - . mRNA SPAC29E6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29E6.05c" ; systematic_id "SPAC29E6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4410605 4411172 . - . mRNA SPAC29E6.05c ; systematic_id "SPAC29E6.05c" ; colour "7" ; gene "SPAC30.09c ||| SPAC29E6.05c" ; Alias "SPAC30.09c" ; db_xref "SPD:06/06A03" ; synonym "SPAC30.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008113; protein-methionine-S-oxide reductase activity
GO:0044267; cellular protein metabolic process
GO:0034599; cellular response to oxidative stress" ; primary_name "SPAC30.09c" ; product "peptide methionine sulfoxide reductase (predicted)" ; EC_number "1.8.4.11" ;
chromosome1 GeneDB CDS 4410605 4410633 . - . mRNA SPAC29E6.05c ; colour "7" ;
chromosome1 GeneDB CDS 4410689 4411172 . - . mRNA SPAC29E6.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 4410634 4410650 . - . misc_feature unknown_3607 ; colour "6" ; note "ctaactcattcgattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4410683 4410688 . - . misc_feature unknown_3608 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4411171 4411233 . - . mRNA SPAC29E6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29E6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4411564 4411654 . - . mRNA SPAC29E6.06c ; Alias "SPAC30.10c" ; ID "SPAC29E6.06c" ; db_xref "SPD:28/28B05" ; systematic_id "SPAC29E6.06c" ; primary_name "SPAC30.10c" ; gene "SPAC30.10c ||| SPAC29E6.06c" ; note "mRNA from AU011953" ;
chromosome1 GeneDB CDS_parts 4411655 4413919 . - . mRNA SPAC29E6.06c ; systematic_id "SPAC29E6.06c" ; colour "7" ; gene "SPAC30.10c ||| SPAC29E6.06c" ; Alias "SPAC30.10c" ; db_xref "KEGG:MAP00272; ||| KEGG:MAP00970; ||| SPD:28/28B05" ; synonym "SPAC30.10c" ; GO "GO:0004817; cysteine-tRNA ligase activity
GO:0006423; cysteinyl-tRNA aminoacylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL247W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CARS ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "SPAC30.10c" ; product "cytoplasmic cysteine-tRNA ligase Crs1 (predicted)" ; EC_number "6.1.1.16" ;
chromosome1 GeneDB CDS 4411655 4413919 . - . mRNA SPAC29E6.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4413920 4413996 . - . mRNA SPAC29E6.06c ; Alias "SPAC30.10c" ; ID "SPAC29E6.06c" ; systematic_id "SPAC29E6.06c" ; primary_name "SPAC30.10c" ; gene "SPAC30.10c ||| SPAC29E6.06c" ; note "mRNA from AU010053" ;
chromosome1 GeneDB CDS_parts 4414824 4415174 . + . mRNA SPAC29E6.07 ; systematic_id "SPAC29E6.07" ; colour "8" ; gene "SPAC30.11 ||| SPAC29E6.07" ; Alias "SPAC30.11" ; db_xref "SPD:02/02C02" ; synonym "SPAC30.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; GO "GO:0007126; meiosis
GO:0007126; meiosis
GO:0009897; external side of plasma membrane" ; primary_name "SPAC30.11" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4414824 4415174 . + . mRNA SPAC29E6.07 ; colour "8" ;
chromosome1 GeneDB CDS_parts 4415547 4416619 . + . mRNA SPAC29E6.08 ; systematic_id "SPAC29E6.08" ; colour "2" ; gene "tbp1 ||| tdf1 ||| tbp ||| SPAC29E6.08 ||| SPAC30.12" ; Alias "tbp1" ; db_xref "SPD:43/43G03" ; synonym "tdf1 ||| tbp ||| SPAC30.12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER148W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0005669; transcription factor TFIID complex
GO:0000126; transcription factor TFIIIB complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0003709; RNA polymerase III transcription factor activity
GO:0003701; RNA polymerase I transcription factor activity
GO:0006360; transcription from RNA polymerase I promoter
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0000120; RNA polymerase I transcription factor complex" ; primary_name "tbp1" ; product "TATA-binding protein (TBP)" ;
chromosome1 GeneDB CDS 4415547 4415749 . + . mRNA SPAC29E6.08 ; colour "2" ;
chromosome1 GeneDB CDS 4416005 4416065 . + . mRNA SPAC29E6.08 ; colour "2" ;
chromosome1 GeneDB CDS 4416118 4416378 . + . mRNA SPAC29E6.08 ; colour "2" ;
chromosome1 GeneDB CDS 4416449 4416619 . + . mRNA SPAC29E6.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 4415750 4415755 . + . misc_feature unknown_3609 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4415750 4416004 . + . intron SPAC29E6.08 ; Alias "tbp1" ; db_xref "SPD:43/43G03" ; systematic_id "SPAC29E6.08" ; primary_name "tbp1" ; gene "tbp1 ||| tdf1 ||| tbp ||| SPAC29E6.08 ||| SPAC30.12" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4415984 4416004 . + . misc_feature unknown_3610 ; colour "6" ; note "ctaataatcctcttaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4416066 4416071 . + . misc_feature unknown_3611 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 4416066 4416117 . + . intron SPAC29E6.08 ; Alias "tbp1" ; db_xref "SPD:43/43G03" ; systematic_id "SPAC29E6.08" ; primary_name "tbp1" ; gene "tbp1 ||| tdf1 ||| tbp ||| SPAC29E6.08 ||| SPAC30.12" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4416104 4416117 . + . misc_feature unknown_3612 ; colour "6" ; note "ttgaccaaacatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4416379 4416384 . + . misc_feature unknown_3613 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4416431 4416448 . + . misc_feature unknown_3614 ; colour "6" ; note "ctaactgttcttttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4416620 4417066 . + . mRNA SPAC29E6.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29E6.08" ; systematic_id "SPAC29E6.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4417454 4417469 . + . mRNA SPAC29E6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29E6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4417470 4418489 . + . mRNA SPAC29E6.09 ; systematic_id "SPAC29E6.09" ; colour "8" ; gene "SPAC30.13 ||| SPAC29E6.09" ; Alias "SPAC30.13" ; db_xref "SPD:15/15C02" ; synonym "SPAC30.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "SPAC30.13" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4417470 4418489 . + . mRNA SPAC29E6.09 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 4418490 4418608 . + . mRNA SPAC29E6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29E6.09" ; systematic_id "SPAC29E6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4418940 4418953 . - . mRNA SPAC29E6.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29E6.10c" ; systematic_id "SPAC29E6.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4418954 4422211 . - . mRNA SPAC29E6.10c ; systematic_id "SPAC29E6.10c" ; colour "10" ; gene "SPAC30.14c ||| SPAC29E6.10c" ; Alias "SPAC30.14c" ; db_xref "SPD:30/30C07" ; synonym "SPAC30.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YNL091W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "SPAC30.14c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 4418954 4422211 . - . mRNA SPAC29E6.10c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4422212 4422511 . - . mRNA SPAC29E6.10c ; Alias "SPAC30.14c" ; ID "SPAC29E6.10c" ; systematic_id "SPAC29E6.10c" ; primary_name "SPAC30.14c" ; gene "SPAC30.14c ||| SPAC29E6.10c" ; note "mRNA from AU013041" ;
chromosome1 GeneDB 5'-UTR 4422730 4423001 . + . mRNA SPAC16.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4422918 4423018 . + . misc_feature unknown_3615 ; note "nominal overlap with cosmid SPAC30 and cosmid SPAC16" ;
chromosome1 GeneDB CDS_parts 4423002 4424176 . + . mRNA SPAC16.01 ; systematic_id "SPAC16.01" ; colour "2" ; gene "rho2 ||| SPAC16.01" ; Alias "rho2" ; db_xref "SPD:18/18F05" ; GO "GO:0051286; cell tip
GO:0032153; cell division site
GO:0030427; site of polarized growth
GO:0005525; GTP binding
GO:0003924; GTPase activity
; protein binding
; protein binding
GO:0032949; regulation of alpha-glucan biosynthesis
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9405296; date=19700101 ||| term=Rho family; date=19700101 ||| term=orthologous to S. cerevisiae YNL090W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=modification, gerenylgerenylated; cv=pt_mod; date=19700101" ; primary_name "rho2" ; product "Rho family GTPase Rho2" ;
chromosome1 GeneDB CDS 4423002 4423027 . + . mRNA SPAC16.01 ; colour "2" ;
chromosome1 GeneDB CDS 4423112 4423190 . + . mRNA SPAC16.01 ; colour "2" ;
chromosome1 GeneDB CDS 4423307 4423312 . + . mRNA SPAC16.01 ; colour "2" ;
chromosome1 GeneDB CDS 4423366 4423404 . + . mRNA SPAC16.01 ; colour "2" ;
chromosome1 GeneDB CDS 4423517 4423557 . + . mRNA SPAC16.01 ; colour "2" ;
chromosome1 GeneDB CDS 4423626 4423644 . + . mRNA SPAC16.01 ; colour "2" ;
chromosome1 GeneDB CDS 4423693 4423785 . + . mRNA SPAC16.01 ; colour "2" ;
chromosome1 GeneDB CDS 4423830 4423964 . + . mRNA SPAC16.01 ; colour "2" ;
chromosome1 GeneDB CDS 4424012 4424176 . + . mRNA SPAC16.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 4423002 4423018 . + . misc_feature unknown_3616 ; note "rho2 protein: CDS completely contained in cosmid c16" ;
chromosome1 GeneDB misc_feature 4423028 4423033 . + . misc_feature unknown_3617 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB intron 4423028 4423111 . + . intron SPAC16.01 ; Alias "rho2" ; db_xref "SPD:18/18F05" ; systematic_id "SPAC16.01" ; primary_name "rho2" ; gene "rho2 ||| SPAC16.01" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4423098 4423111 . + . misc_feature unknown_3618 ; colour "6" ; note "ttaatatttttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4423191 4423196 . + . misc_feature unknown_3619 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4423191 4423306 . + . intron SPAC16.01 ; Alias "rho2" ; db_xref "SPD:18/18F05" ; systematic_id "SPAC16.01" ; primary_name "rho2" ; gene "rho2 ||| SPAC16.01" ; note "confirmed, PMID:12653963" ;
chromosome1 GeneDB misc_feature 4423289 4423306 . + . misc_feature unknown_3620 ; colour "6" ; note "ctaacttactggcgatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4423313 4423318 . + . misc_feature unknown_3621 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome1 GeneDB intron 4423313 4423365 . + . intron SPAC16.01 ; Alias "rho2" ; db_xref "SPD:18/18F05" ; systematic_id "SPAC16.01" ; primary_name "rho2" ; gene "rho2 ||| SPAC16.01" ; note "confirmed, PMID:12653963" ;
chromosome1 GeneDB misc_feature 4423347 4423365 . + . misc_feature unknown_3622 ; colour "6" ; note "ttaataacagttactatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4423405 4423410 . + . misc_feature unknown_3623 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 4423405 4423516 . + . intron SPAC16.01 ; Alias "rho2" ; db_xref "SPD:18/18F05" ; systematic_id "SPAC16.01" ; primary_name "rho2" ; gene "rho2 ||| SPAC16.01" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4423504 4423516 . + . misc_feature unknown_3624 ; colour "6" ; note "ctaactaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4423558 4423563 . + . misc_feature unknown_3625 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4423558 4423625 . + . intron SPAC16.01 ; Alias "rho2" ; db_xref "SPD:18/18F05" ; systematic_id "SPAC16.01" ; primary_name "rho2" ; gene "rho2 ||| SPAC16.01" ; note "confirmed, PMID:12653963" ;
chromosome1 GeneDB misc_feature 4423610 4423625 . + . misc_feature unknown_3626 ; colour "6" ; note "ctaattcttgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4423645 4423650 . + . misc_feature unknown_3627 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB intron 4423645 4423692 . + . intron SPAC16.01 ; Alias "rho2" ; db_xref "SPD:18/18F05" ; systematic_id "SPAC16.01" ; primary_name "rho2" ; gene "rho2 ||| SPAC16.01" ; note "intron confirmed by est" ;
chromosome1 GeneDB misc_feature 4423679 4423692 . + . misc_feature unknown_3628 ; colour "6" ; note "ttaacccaatgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4423786 4423791 . + . misc_feature unknown_3629 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB intron 4423786 4423829 . + . intron SPAC16.01 ; Alias "rho2" ; db_xref "SPD:18/18F05" ; systematic_id "SPAC16.01" ; primary_name "rho2" ; gene "rho2 ||| SPAC16.01" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4423816 4423829 . + . misc_feature unknown_3630 ; colour "6" ; note "ttaacattatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4423965 4423970 . + . misc_feature unknown_3631 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB intron 4423965 4424011 . + . intron SPAC16.01 ; Alias "rho2" ; db_xref "SPD:18/18F05" ; systematic_id "SPAC16.01" ; primary_name "rho2" ; gene "rho2 ||| SPAC16.01" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4424002 4424011 . + . misc_feature unknown_3632 ; colour "6" ; note "ttgatatcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4424177 4424700 . + . mRNA SPAC16.01 ; Alias "rho2" ; ID "SPAC16.01" ; db_xref "EMBL:D38181 ||| SPD:18/18F05" ; systematic_id "SPAC16.01" ; gene "rho2 ||| SPAC16.01" ; primary_name "rho2" ;
chromosome1 GeneDB 3'-UTR 4425136 4425249 . - . mRNA SPAC16.02c ; Alias "srp2" ; ID "SPAC16.02c" ; db_xref "EMBL:D89163 ||| SPD:33/33D01" ; systematic_id "SPAC16.02c" ; gene "srp2 ||| SPAC16.02c" ; primary_name "srp2" ;
chromosome1 GeneDB CDS_parts 4425250 4426965 . - . mRNA SPAC16.02c ; systematic_id "SPAC16.02c" ; colour "2" ; gene "srp2 ||| SPAC16.02c" ; Alias "srp2" ; db_xref "SPD:33/33D01" ; GO "GO:0005634; nucleus
GO:0003723; RNA binding
GO:0003729; mRNA binding
GO:0008143; poly(A) binding
GO:0046982; protein heterodimerization activity
GO:0006406; mRNA export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SR family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YDR432W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:12186627; date=20090213 ||| term=human TAF15 ortholog; date=20100203 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "srp2" ; product "mRNA export factor Srp2" ;
chromosome1 GeneDB CDS 4425250 4425837 . - . mRNA SPAC16.02c ; colour "2" ;
chromosome1 GeneDB CDS 4425893 4425992 . - . mRNA SPAC16.02c ; colour "2" ;
chromosome1 GeneDB CDS 4426037 4426110 . - . mRNA SPAC16.02c ; colour "2" ;
chromosome1 GeneDB CDS 4426199 4426268 . - . mRNA SPAC16.02c ; colour "2" ;
chromosome1 GeneDB CDS 4426459 4426527 . - . mRNA SPAC16.02c ; colour "2" ;
chromosome1 GeneDB CDS 4426577 4426601 . - . mRNA SPAC16.02c ; colour "2" ;
chromosome1 GeneDB CDS 4426654 4426659 . - . mRNA SPAC16.02c ; colour "2" ;
chromosome1 GeneDB CDS 4426700 4426736 . - . mRNA SPAC16.02c ; colour "2" ;
chromosome1 GeneDB CDS 4426793 4426878 . - . mRNA SPAC16.02c ; colour "2" ;
chromosome1 GeneDB CDS 4426923 4426965 . - . mRNA SPAC16.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 4425838 4425851 . - . misc_feature unknown_3633 ; colour "6" ; note "ctaacgattagcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4425838 4425892 . - . intron SPAC16.02c ; Alias "srp2" ; db_xref "EMBL:D89163 ||| SPD:33/33D01" ; systematic_id "SPAC16.02c" ; gene "srp2 ||| SPAC16.02c" ; primary_name "srp2" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4425887 4425892 . - . misc_feature unknown_3634 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4425993 4426007 . - . misc_feature unknown_3635 ; colour "6" ; note "ctaactttaatgcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4425993 4426036 . - . intron SPAC16.02c ; Alias "srp2" ; db_xref "EMBL:D89163 ||| SPD:33/33D01" ; systematic_id "SPAC16.02c" ; gene "srp2 ||| SPAC16.02c" ; primary_name "srp2" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4426031 4426036 . - . misc_feature unknown_3636 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4426111 4426126 . - . misc_feature unknown_3637 ; colour "6" ; note "ttaacacttttcatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4426111 4426198 . - . intron SPAC16.02c ; Alias "srp2" ; db_xref "EMBL:D89163 ||| SPD:33/33D01" ; systematic_id "SPAC16.02c" ; gene "srp2 ||| SPAC16.02c" ; primary_name "srp2" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4426193 4426198 . - . misc_feature unknown_3638 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4426269 4426280 . - . misc_feature unknown_3639 ; colour "6" ; note "ctaacgtatcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4426269 4426458 . - . intron SPAC16.02c ; Alias "srp2" ; db_xref "EMBL:D89163 ||| SPD:33/33D01" ; systematic_id "SPAC16.02c" ; gene "srp2 ||| SPAC16.02c" ; primary_name "srp2" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4426453 4426458 . - . misc_feature unknown_3640 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4426528 4426540 . - . misc_feature unknown_3641 ; colour "6" ; note "ctaatgttcgaag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4426528 4426576 . - . intron SPAC16.02c ; Alias "srp2" ; db_xref "EMBL:D89163 ||| SPD:33/33D01" ; systematic_id "SPAC16.02c" ; primary_name "srp2" ; gene "srp2 ||| SPAC16.02c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4426571 4426576 . - . misc_feature unknown_3642 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4426602 4426618 . - . misc_feature unknown_3643 ; colour "6" ; note "ctaatcttataaaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4426648 4426653 . - . misc_feature unknown_3644 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4426660 4426671 . - . misc_feature unknown_3645 ; colour "6" ; note "ctaacagtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4426694 4426699 . - . misc_feature unknown_3646 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4426737 4426750 . - . misc_feature unknown_3647 ; colour "6" ; note "ctaacttgatgtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4426737 4426792 . - . intron SPAC16.02c ; Alias "srp2" ; db_xref "SPD:33/33D01" ; systematic_id "SPAC16.02c" ; primary_name "srp2" ; gene "srp2 ||| SPAC16.02c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4426787 4426792 . - . misc_feature unknown_3648 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4426879 4426893 . - . misc_feature unknown_3649 ; colour "6" ; note "ttaacaaaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4426879 4426922 . - . intron SPAC16.02c ; Alias "srp2" ; db_xref "SPD:33/33D01" ; systematic_id "SPAC16.02c" ; primary_name "srp2" ; gene "srp2 ||| SPAC16.02c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4426917 4426922 . - . misc_feature unknown_3650 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4426964 4426967 . - . mRNA SPAC16.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4427514 4427714 . - . mRNA SPAC16.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16.03c" ; systematic_id "SPAC16.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4427715 4428805 . - . mRNA SPAC16.03c ; systematic_id "SPAC16.03c" ; colour "7" ; gene "ura2 ||| SPAC16.03c" ; Alias "ura2" ; db_xref "KEGG:MAP00240; ||| SPD:17/17A08" ; GO "GO:0006221; pyrimidine nucleotide biosynthesis
GO:0004151; dihydroorotase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR420W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "ura2" ; product "dihydroorotase Ura2 (predicted)" ; EC_number "3.5.2.3" ;
chromosome1 GeneDB CDS 4427715 4428611 . - . mRNA SPAC16.03c ; colour "7" ;
chromosome1 GeneDB CDS 4428689 4428805 . - . mRNA SPAC16.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 4428612 4428627 . - . misc_feature unknown_3651 ; colour "6" ; note "ttaacgcgtataacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4428683 4428688 . - . misc_feature unknown_3652 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4428804 4428838 . - . mRNA SPAC16.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4429023 4429505 . + . misc_RNA SPNCRNA.247 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.247" ; synonym "SPNG847" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 4429656 4429683 . + . mRNA SPAC16.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC16.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4429684 4431585 . + . mRNA SPAC16.04 ; systematic_id "SPAC16.04" ; colour "7" ; gene "dus3 ||| SPAC16.04" ; Alias "dus3" ; db_xref "SPD:26/26F01" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0017150; tRNA dihydrouridine synthase activity
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YLR401C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dus3" ; product "tRNA dihydrouridine synthase Dus3 (predicted)" ;
chromosome1 GeneDB CDS 4429684 4429724 . + . mRNA SPAC16.04 ; colour "7" ;
chromosome1 GeneDB CDS 4429773 4431585 . + . mRNA SPAC16.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 4429725 4429730 . + . misc_feature unknown_3653 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4429758 4429772 . + . misc_feature unknown_3654 ; colour "6" ; note "ctaactataccttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4431586 4431699 . + . mRNA SPAC16.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC16.04" ; systematic_id "SPAC16.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4431869 4432303 . - . mRNA SPAC16.05c ; Alias "sfp1" ; ID "SPAC16.05c" ; db_xref "SPD:20/20E11" ; systematic_id "SPAC16.05c" ; primary_name "sfp1" ; gene "sfp1 ||| SPAC16.05c" ; note "mRNA from spc06207" ;
chromosome1 GeneDB CDS_parts 4432304 4433632 . - . mRNA SPAC16.05c ; systematic_id "SPAC16.05c" ; colour "7" ; gene "sfp1 ||| SPAC16.05c" ; Alias "sfp1" ; db_xref "SPD:20/20E11" ; GO "GO:0006355; regulation of transcription, DNA- dependent
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YLR403W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human JAZF1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "sfp1" ; product "transcription factor Sfp1 (predicted)" ;
chromosome1 GeneDB CDS 4432304 4433632 . - . mRNA SPAC16.05c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4433633 4434012 . - . mRNA SPAC16.05c ; Alias "sfp1" ; ID "SPAC16.05c" ; systematic_id "SPAC16.05c" ; primary_name "sfp1" ; gene "sfp1 ||| SPAC16.05c" ; note "mRNA from spc00022" ;
chromosome1 GeneDB misc_RNA 4434321 4434475 . - . misc_RNA SPNCRNA.99 ; systematic_id "SPNCRNA.99" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.99" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB misc_feature 4434744 4434839 . + . misc_feature unknown_3655 ; note "nominal overlap with cosmid SPAC16 and cosmid SPAC9E9" ;
chromosome1 GeneDB CDS_parts 4434861 4435201 . + . mRNA SPAC9E9.01 ; db_xref "SPD:02/02A08" ; systematic_id "SPAC9E9.01" ; colour "6" ; gene "SPAC9E9.01" ; product "dubious" ;
chromosome1 GeneDB CDS 4434861 4434897 . + . mRNA SPAC9E9.01 ; colour "6" ;
chromosome1 GeneDB CDS 4434939 4435201 . + . mRNA SPAC9E9.01 ; colour "6" ;
chromosome1 GeneDB misc_feature 4434898 4434903 . + . misc_feature unknown_3656 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4434923 4434938 . + . misc_feature unknown_3657 ; colour "6" ; note "ctaatatacggtcaag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 4435617 4435913 . - . mRNA SPAC9E9.02 ; systematic_id "SPAC9E9.02" ; colour "6" ; gene "SPAC9E9.02" ; product "dubious" ;
chromosome1 GeneDB CDS 4435617 4435913 . - . mRNA SPAC9E9.02 ; colour "6" ;
chromosome1 GeneDB CDS_parts 4437311 4437862 . - . mRNA SPAC9E9.17c ; db_xref "SPD:02/02F07" ; systematic_id "SPAC9E9.17c" ; colour "6" ; gene "SPAC9E9.17c" ; product "dubious" ; note "has a good correlation score and good consensus intron; gene prediction extended 29-08-05" ;
chromosome1 GeneDB CDS 4437311 4437401 . - . mRNA SPAC9E9.17c ; colour "6" ;
chromosome1 GeneDB CDS 4437606 4437648 . - . mRNA SPAC9E9.17c ; colour "6" ;
chromosome1 GeneDB CDS 4437732 4437813 . - . mRNA SPAC9E9.17c ; colour "6" ;
chromosome1 GeneDB CDS 4437860 4437862 . - . mRNA SPAC9E9.17c ; colour "6" ;
chromosome1 GeneDB intron 4437402 4437605 . - . intron SPAC9E9.17c ; db_xref "SPD:02/02F07" ; systematic_id "SPAC9E9.17c" ; gene "SPAC9E9.17c" ;
chromosome1 GeneDB misc_RNA 4439118 4439451 . + . misc_RNA SPNCRNA.12 ; Alias "prl12" ; db_xref "PMID:12597277 ||| EMBL:AB084824" ; systematic_id "SPNCRNA.12" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl12" ; gene "prl12 ||| SPNCRNA.12" ; product "non-coding RNA, poly(A)-bearing RNA (predicted)" ;
chromosome1 GeneDB 5'-UTR 4439887 4440095 . + . mRNA SPAC9E9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9E9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4440096 4442372 . + . mRNA SPAC9E9.03 ; systematic_id "SPAC9E9.03" ; colour "7" ; gene "leu2 ||| SPAC9E9.03" ; Alias "leu2" ; db_xref "SPD:40/40H05" ; GO "GO:0003861; 3-isopropylmalate dehydratase activity
GO:0009098; leucine biosynthesis
GO:0005829; cytosol" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL009C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "leu2" ; product "3-isopropylmalate dehydratase Leu2 (predicted)" ; EC_number "4.2.1.33" ;
chromosome1 GeneDB CDS 4440096 4442372 . + . mRNA SPAC9E9.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4442373 4442513 . + . mRNA SPAC9E9.03 ; Alias "leu2" ; ID "SPAC9E9.03" ; db_xref "SPD:40/40H05" ; systematic_id "SPAC9E9.03" ; primary_name "leu2" ; gene "leu2 ||| SPAC9E9.03" ; note "mRNA from AU010497" ;
chromosome1 GeneDB CDS_parts 4443078 4443929 . + . mRNA SPAC9E9.04 ; db_xref "SPD:11/11B10" ; systematic_id "SPAC9E9.04" ; controlled_curation "term=orthologous to S. cerevisiae YKL065C and YMR040W and YDL072C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006888; ER to Golgi vesicle-mediated transport" ; gene "SPAC9E9.04" ; product "bcap family homolog (predicted)" ;
chromosome1 GeneDB CDS 4443078 4443233 . + . mRNA SPAC9E9.04 ; colour "7" ;
chromosome1 GeneDB CDS 4443519 4443929 . + . mRNA SPAC9E9.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 4443234 4443239 . + . misc_feature unknown_3658 ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4443506 4443518 . + . misc_feature unknown_3659 ; note "ctaatacttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4443930 4444196 . + . mRNA SPAC9E9.04 ; ID "SPAC9E9.04" ; db_xref "SPD:11/11B10" ; systematic_id "SPAC9E9.04" ; gene "SPAC9E9.04" ; note "mRNA from AU010979" ;
chromosome1 GeneDB 5'-UTR 4444401 4444460 . + . mRNA SPAC9E9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9E9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4444461 4445402 . + . mRNA SPAC9E9.05 ; db_xref "SPD:13/13B11" ; systematic_id "SPAC9E9.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC9E9.05" ; product "sequence orphan" ; note "candidate ortholog of S. cerevisiae YPR171W, similarity is low but reciprocal best hits" ;
chromosome1 GeneDB CDS 4444461 4445402 . + . mRNA SPAC9E9.05 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 4445830 4445865 . - . mRNA SPAC9E9.06c ; ID "SPAC9E9.06c" ; db_xref "EMBL:Z46263 ||| SPD:25/25G02" ; systematic_id "SPAC9E9.06c" ; gene "SPAC9E9.06c" ;
chromosome1 GeneDB CDS_parts 4445866 4447468 . - . mRNA SPAC9E9.06c ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00750; ||| SPD:25/25G02" ; systematic_id "SPAC9E9.06c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR053W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009088; threonine biosynthesis
GO:0004795; threonine synthase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC9E9.06c" ; product "threonine synthase (predicted)" ; EC_number "4.2.3.1" ;
chromosome1 GeneDB CDS 4445866 4447341 . - . mRNA SPAC9E9.06c ; colour "7" ;
chromosome1 GeneDB CDS 4447400 4447468 . - . mRNA SPAC9E9.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 4447342 4447362 . - . misc_feature unknown_3660 ; note "ctaattgccattactgtatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4447342 4447399 . - . intron SPAC9E9.06c ; db_xref "EMBL:Z46263 ||| SPD:25/25G02" ; systematic_id "SPAC9E9.06c" ; gene "SPAC9E9.06c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4447394 4447399 . - . misc_feature unknown_3661 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4447469 4447486 . - . mRNA SPAC9E9.06c ; ID "SPAC9E9.06c" ; db_xref "EMBL:Z46263" ; systematic_id "SPAC9E9.06c" ; gene "SPAC9E9.06c" ;
chromosome1 GeneDB 3'-UTR 4448030 4448914 . - . mRNA SPAC9E9.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9E9.07c" ; systematic_id "SPAC9E9.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4448915 4449517 . - . mRNA SPAC9E9.07c ; systematic_id "SPAC9E9.07c" ; colour "2" ; gene "ypt2 ||| SPAC9E9.07c" ; Alias "ypt2" ; db_xref "SPD:31/31F06" ; GO "GO:0006887; exocytosis
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006886; intracellular protein transport
GO:0006906; vesicle fusion
GO:0006893; Golgi to plasma membrane transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Ypt subfamily; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:2328721; date=19700101 ||| term=orthologous to S. cerevisiae YFL005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ypt2" ; product "GTPase Ypt2" ;
chromosome1 GeneDB CDS 4448915 4449517 . - . mRNA SPAC9E9.07c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4450611 4451114 . + . mRNA SPAC9E9.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9E9.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4451115 4453069 . + . mRNA SPAC9E9.08 ; systematic_id "SPAC9E9.08" ; colour "2" ; gene "rad26 ||| SPAC9E9.08" ; Alias "rad26" ; db_xref "SPD:27/27A05" ; GO "GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0005634; nucleus
GO:0007095; mitotic cell cycle G2/M transition DNA damage checkpoint
GO:0031573; intra-S DNA damage checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR499W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rad26" ; product "ATRIP, ATR checkpoint kinase regulatory subunit Rad26" ;
chromosome1 GeneDB CDS 4451115 4451864 . + . mRNA SPAC9E9.08 ; colour "2" ;
chromosome1 GeneDB CDS 4451920 4452585 . + . mRNA SPAC9E9.08 ; colour "2" ;
chromosome1 GeneDB CDS 4452641 4453069 . + . mRNA SPAC9E9.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 4451865 4451870 . + . misc_feature unknown_3662 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4451907 4451919 . + . misc_feature unknown_3663 ; note "cttacttttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4452586 4452591 . + . misc_feature unknown_3664 ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4452629 4452640 . + . misc_feature unknown_3665 ; note "ctaacaaattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4453070 4453254 . + . mRNA SPAC9E9.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9E9.08" ; systematic_id "SPAC9E9.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4453280 4453559 . - . mRNA SPAC9E9.09c ; ID "SPAC9E9.09c" ; db_xref "SPD:24/24E04" ; systematic_id "SPAC9E9.09c" ; gene "SPAC9E9.09c" ; note "mRNA from AU010951" ;
chromosome1 GeneDB CDS_parts 4453560 4455071 . - . mRNA SPAC9E9.09c ; db_xref "SPD:24/24E04" ; systematic_id "SPAC9E9.09c" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0006068; ethanol catabolism
GO:0006740; NADPH regeneration
GO:0004029; aldehyde dehydrogense (NAD) activity
GO:0004030; aldehyde dehydrogense [NAD(P)+] activity
GO:0006090; pyruvate metabolic process
GO:0019413; acetate biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR374W and YER073W and YPL061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC9E9.09c" ; product "aldehyde dehydrogenase (predicted)" ; EC_number "1.2.1.3" ;
chromosome1 GeneDB CDS 4453560 4455071 . - . mRNA SPAC9E9.09c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4455070 4455618 . - . mRNA SPAC9E9.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9E9.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4458813 4459224 . - . mRNA SPAC9E9.10c ; Alias "cbh1" ; ID "SPAC9E9.10c" ; db_xref "EMBL:U86754 ||| SPD:25/25A09" ; systematic_id "SPAC9E9.10c" ; gene "cbh1 ||| cbh ||| SPAC9E9.10c" ; primary_name "cbh1" ;
chromosome1 GeneDB CDS_parts 4459225 4460769 . - . mRNA SPAC9E9.10c ; systematic_id "SPAC9E9.10c" ; colour "2" ; gene "cbh1 ||| cbh ||| SPAC9E9.10c" ; Alias "cbh1" ; db_xref "SPD:25/25A09" ; synonym "cbh" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CENP-B box; date=19700101 ||| term=orthologous to S. cerevisiae YDR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000790; nuclear chromatin
GO:0000780; condensed nuclear chromosome, pericentric region
GO:0019237; centromeric DNA binding
GO:0046983; protein dimerization activity
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0016570; histone modification
GO:0005515; protein binding" ; primary_name "cbh1" ; product "CENP-B homolog Cbh1" ;
chromosome1 GeneDB CDS 4459225 4460769 . - . mRNA SPAC9E9.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4460770 4460858 . - . mRNA SPAC9E9.10c ; Alias "cbh1" ; ID "SPAC9E9.10c" ; db_xref "EMBL:U86754" ; systematic_id "SPAC9E9.10c" ; gene "cbh1 ||| cbh ||| SPAC9E9.10c" ; primary_name "cbh1" ;
chromosome1 GeneDB 5'-UTR 4461697 4461783 . + . mRNA SPAC9E9.11 ; Alias "plr1" ; ID "SPAC9E9.11" ; systematic_id "SPAC9E9.11" ; primary_name "plr1" ; gene "plr1 ||| plr ||| SPAC9E9.11" ; note "mRNA from SPD205" ;
chromosome1 GeneDB CDS_parts 4461784 4462785 . + . mRNA SPAC9E9.11 ; systematic_id "SPAC9E9.11" ; colour "2" ; gene "plr1 ||| plr ||| SPAC9E9.11" ; Alias "plr1" ; db_xref "SPD:14/14G01" ; synonym "plr" ; GO "GO:0050236; pyridoxine 4-dehydrogenase activity
GO:0042821; pyridoxal biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR127W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "plr1" ; product "pyridoxal reductase Plr1" ; EC_number "1.1.1.65" ;
chromosome1 GeneDB CDS 4461784 4462785 . + . mRNA SPAC9E9.11 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4462786 4462901 . + . mRNA SPAC9E9.11 ; Alias "plr1" ; ID "SPAC9E9.11" ; db_xref "SPD:14/14G01" ; systematic_id "SPAC9E9.11" ; primary_name "plr1" ; gene "plr1 ||| plr ||| SPAC9E9.11" ; note "mRNA from SPD205" ;
chromosome1 GeneDB 3'-UTR 4462987 4463078 . - . mRNA SPAC9E9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9E9.12c" ; systematic_id "SPAC9E9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4463079 4467362 . - . mRNA SPAC9E9.12c ; systematic_id "SPAC9E9.12c" ; colour "2" ; gene "ybt1 ||| abc1 ||| SPAC9E9.12c" ; Alias "ybt1" ; db_xref "SPD:48/48G02" ; synonym "abc1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=MDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797|PMID:9037770; date=20070216 ||| term=orthologous to S. cerevisiae YLL048C and YDR135C and YLL015W and YHL035C and YGR281W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=warning, gene name conflict; cv=warning; date=20100317" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005524; ATP binding
GO:0042626; ATPase activity, coupled to transmembrane movement of substances" ; primary_name "ybt1" ; product "ABC transporter Ybt1" ;
chromosome1 GeneDB CDS 4463079 4467362 . - . mRNA SPAC9E9.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4467361 4467663 . - . mRNA SPAC9E9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9E9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4467887 4468235 . - . mRNA SPAC9E9.13 ; Alias "wos2" ; ID "SPAC9E9.13" ; db_xref "SPD:09/09D02" ; systematic_id "SPAC9E9.13" ; primary_name "wos2" ; gene "wos2 ||| SPAC9E9.13" ; note "mRNA from SPWOS2" ;
chromosome1 GeneDB CDS_parts 4468236 4468995 . - . mRNA SPAC9E9.13 ; systematic_id "SPAC9E9.13" ; colour "2" ; gene "wos2 ||| SPAC9E9.13" ; db_xref "SPD:09/09D02" ; Alias "wos2" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:0007346; regulation of progression through mitotic cell cycle
GO:0032212; positive regulation of telomere maintence via telomerase
GO:0006457; protein folding
GO:0051087; chaperone binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL117W; date=19700101 ||| term=gene expression, alternative transcripts, alternative polyadenylation; db_xref=PMID:12207226; cv=gene_ex; date=19700101 ||| term=CS domain; date=20071105 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "wos2" ; product "p23 homolog, predicted co-chaperone Wos2" ;
chromosome1 GeneDB CDS 4468236 4468768 . - . mRNA SPAC9E9.13 ; colour "2" ;
chromosome1 GeneDB CDS 4468968 4468995 . - . mRNA SPAC9E9.13 ; colour "2" ;
chromosome1 GeneDB misc_feature 4468769 4468783 . - . misc_feature unknown_3666 ; note "ctaacattcgtttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4468769 4468967 . - . intron SPAC9E9.13 ; Alias "wos2" ; db_xref "SPD:09/09D02" ; systematic_id "SPAC9E9.13" ; primary_name "wos2" ; gene "wos2 ||| SPAC9E9.13" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4468962 4468967 . - . misc_feature unknown_3667 ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4468996 4469061 . - . mRNA SPAC9E9.13 ; Alias "wos2" ; ID "SPAC9E9.13" ; systematic_id "SPAC9E9.13" ; primary_name "wos2" ; gene "wos2 ||| SPAC9E9.13" ; note "mRNA from AU009054" ;
chromosome1 GeneDB 5'-UTR 4469204 4469660 . + . mRNA SPAC9E9.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC9E9.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4469661 4470356 . + . mRNA SPAC9E9.14 ; systematic_id "SPAC9E9.14" ; colour "2" ; gene "vps24 ||| SPAC9E9.14" ; Alias "vps24" ; db_xref "SPD:08/08B04" ; GO "GO:0000815; ESCRT III complex
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps24" ; product "vacuolar sorting protein Vps24" ;
chromosome1 GeneDB CDS 4469661 4470356 . + . mRNA SPAC9E9.14 ; colour "2" ;
chromosome1 GeneDB CDS_parts 4470681 4471340 . + . mRNA SPAC9E9.15 ; db_xref "SPD:42/42G07" ; systematic_id "SPAC9E9.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC9E9.15" ; product "CIA30 protein (predicted)" ;
chromosome1 GeneDB CDS 4470681 4471340 . + . mRNA SPAC9E9.15 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4471341 4471348 . + . mRNA SPAC9E9.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC9E9.15" ; systematic_id "SPAC9E9.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4471656 4472041 . + . misc_RNA SPNCRNA.311 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.311" ; synonym "SPNG861" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 4472557 4472610 . + . mRNA SPAC17C9.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17C9.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4472557 4472821 . - . misc_feature unknown_3668 ; note "nominal overlap with cosmid SPAC17C9 EM:Z73099 S.pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 4472611 4474259 . + . mRNA SPAC17C9.16c ; systematic_id "SPAC17C9.16c" ; colour "7" ; gene "SPAC9E9.16 ||| SPAC17C9.16c ||| mfs1" ; Alias "SPAC9E9.16" ; db_xref "SPD:34/34F06" ; synonym "SPAC9E9.16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005886; plasma membrane
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport" ; primary_name "SPAC9E9.16" ; product "MFS family transmembrane transporter Mfs1 (predicted)" ; reserved_name "mfs1" ;
chromosome1 GeneDB CDS 4472611 4473271 . + . mRNA SPAC17C9.16c ; colour "7" ;
chromosome1 GeneDB CDS 4473325 4474259 . + . mRNA SPAC17C9.16c ; colour "7" ;
chromosome1 GeneDB misc_feature 4473272 4473277 . + . misc_feature unknown_3669 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4473309 4473324 . + . misc_feature unknown_3670 ; colour "6" ; note "ctaactagttttctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4474260 4474595 . + . mRNA SPAC17C9.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17C9.16c" ; systematic_id "SPAC17C9.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4475257 4475289 . + . mRNA SPAC17C9.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17C9.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4475290 4475574 . + . mRNA SPAC17C9.15c ; db_xref "SPD:01/01C10" ; systematic_id "SPAC17C9.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC17C9.15c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4475290 4475574 . + . mRNA SPAC17C9.15c ; colour "8" ;
chromosome1 GeneDB 3'-UTR 4475575 4476465 . + . mRNA SPAC17C9.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17C9.15c" ; systematic_id "SPAC17C9.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4475857 4475869 . - . mRNA SPAC17C9.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17C9.14" ; systematic_id "SPAC17C9.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4475870 4476710 . - . mRNA SPAC17C9.14 ; db_xref "SPD:11/11A05" ; systematic_id "SPAC17C9.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, farnesylated; cv=pt_mod; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YDL065C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0007031; peroxisome organization and biogenesis
GO:0006625; protein targeting to peroxisome
GO:0005829; cytosol" ; gene "SPAC17C9.14" ; product "Pex19 protein (predicted)" ;
chromosome1 GeneDB CDS 4475870 4476474 . - . mRNA SPAC17C9.14 ; colour "7" ;
chromosome1 GeneDB CDS 4476617 4476710 . - . mRNA SPAC17C9.14 ; colour "7" ;
chromosome1 GeneDB misc_feature 4476475 4476488 . - . misc_feature unknown_3671 ; colour "6" ; note "ctaacaaaacaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4476611 4476616 . - . misc_feature unknown_3672 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4476709 4476849 . - . mRNA SPAC17C9.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17C9.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4477511 4477849 . + . mRNA SPAC17C9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17C9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4477850 4478638 . + . mRNA SPAC17C9.13c ; systematic_id "SPAC17C9.13c" ; colour "2" ; gene "cut8 ||| SPAC17C9.13c" ; Alias "cut8" ; db_xref "SPD:09/09H07" ; GO "GO:0031965; nuclear membrane
GO:0005634; nucleus
GO:0031593; polyubiquitin binding
GO:0043495; protein anchor
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0000070; mitotic sister chromatid segregation
GO:0030071; fregulation of mitotic metaphase/anaphase transition
GO:0007052; mitotic spindle organization
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0031144; proteasome localization
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11084332; date=19700101 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=orthologous to S. cerevisiae YIR011C; date=19700101 ||| term=target of proteasome; db_xref=PMID:16096059; date=19700101 ||| term=target of Rhp6; db_xref=PMID:16096059; date=19700101 ||| term=target of Rhp18; db_xref=PMID:16096059; date=19700101 ||| term=target of Ubr1; db_xref=PMID:16096059; date=19700101 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "cut8" ; product "tethering factor for nuclear proteasome Cut8" ;
chromosome1 GeneDB CDS 4477850 4478638 . + . mRNA SPAC17C9.13c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4478332 4478641 . - . mRNA SPAC17C9.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17C9.12" ; systematic_id "SPAC17C9.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4478639 4478830 . + . mRNA SPAC17C9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17C9.13c" ; systematic_id "SPAC17C9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4478642 4479911 . - . mRNA SPAC17C9.12 ; db_xref "SPD:20/20D01" ; systematic_id "SPAC17C9.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER120W and YBL091C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006020; myo-inositol metabolism
GO:0005789; endoplasmic reticulum membrane
GO:0045047; protein targeting to ER" ; gene "SPAC17C9.12" ; product "MSP domain (predicted)" ;
chromosome1 GeneDB CDS 4478642 4479295 . - . mRNA SPAC17C9.12 ; colour "7" ;
chromosome1 GeneDB CDS 4479377 4479492 . - . mRNA SPAC17C9.12 ; colour "7" ;
chromosome1 GeneDB CDS 4479722 4479911 . - . mRNA SPAC17C9.12 ; colour "7" ;
chromosome1 GeneDB misc_feature 4479296 4479314 . - . misc_feature unknown_3673 ; colour "6" ; note "ctaaccaatactttaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4479371 4479376 . - . misc_feature unknown_3674 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4479493 4479514 . - . misc_feature unknown_3675 ; colour "6" ; note "ctaacttctttttttttaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4479716 4479721 . - . misc_feature unknown_3676 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4479910 4479931 . - . mRNA SPAC17C9.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17C9.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4480905 4481930 . + . mRNA SPAC17C9.11c ; db_xref "SPD:15/15D07" ; systematic_id "SPAC17C9.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=UBA domain protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC17C9.11c" ; product "zf-C2H2 type zinc finger protein/UBA domain protein" ;
chromosome1 GeneDB CDS 4480905 4481012 . + . mRNA SPAC17C9.11c ; colour "10" ;
chromosome1 GeneDB CDS 4481158 4481734 . + . mRNA SPAC17C9.11c ; colour "10" ;
chromosome1 GeneDB CDS 4481893 4481930 . + . mRNA SPAC17C9.11c ; colour "10" ;
chromosome1 GeneDB misc_feature 4481013 4481018 . + . misc_feature unknown_3677 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4481135 4481157 . + . misc_feature unknown_3678 ; colour "6" ; note "ttaacaacgattataaaacatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4481735 4481740 . + . misc_feature unknown_3679 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4481735 4481892 . + . intron SPAC17C9.11c ; db_xref "SPD:15/15D07" ; systematic_id "SPAC17C9.11c" ; gene "SPAC17C9.11c" ; note "confirmed intron" ;
chromosome1 GeneDB 3'-UTR 4481792 4481959 . - . mRNA SPAC17C9.10 ; Alias "stm1" ; ID "SPAC17C9.10" ; db_xref "SPD:10/10E03" ; systematic_id "SPAC17C9.10" ; primary_name "stm1" ; gene "stm1 ||| SPAC17C9.10" ; note "mRNA from L49134" ;
chromosome1 GeneDB misc_feature 4481878 4481892 . + . misc_feature unknown_3680 ; colour "6" ; note "ttaacgcttgcatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4481931 4481986 . + . mRNA SPAC17C9.11c ; ID "SPAC17C9.11c" ; db_xref "SPD:15/15D07" ; systematic_id "SPAC17C9.11c" ; gene "SPAC17C9.11c" ; note "mRNA from AU010234" ;
chromosome1 GeneDB CDS_parts 4481960 4482775 . - . mRNA SPAC17C9.10 ; systematic_id "SPAC17C9.10" ; colour "2" ; gene "stm1 ||| SPAC17C9.10" ; Alias "stm1" ; db_xref "SPD:10/10E03" ; GO "GO:0004930; G-protein coupled receptor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PQ loop; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:11461899; date=19700101 ||| term=orthologous to S. cerevisiae YBR147W and YDR090C and YDR352W and YOL092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "stm1" ; product "G-protein coupled receptor Stm1" ;
chromosome1 GeneDB CDS 4481960 4482775 . - . mRNA SPAC17C9.10 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4482776 4483837 . - . mRNA SPAC17C9.10 ; Alias "stm1" ; ID "SPAC17C9.10" ; systematic_id "SPAC17C9.10" ; primary_name "stm1" ; gene "stm1 ||| SPAC17C9.10" ; note "mRNA from L49134" ;
chromosome1 GeneDB 5'-UTR 4483996 4484077 . + . mRNA SPAC17C9.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17C9.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4484078 4484466 . + . mRNA SPAC17C9.09c ; systematic_id "SPAC17C9.09c" ; colour "7" ; gene "tim13 ||| SPAC17C9.09c" ; Alias "tim13" ; db_xref "SPD:31/31D02" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0042719; mitochondrial intermembrane space protein transporter complex
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR181W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tim13" ; product "TIM22 inner membrane protein import complex subunit Tim13 (predicted)" ;
chromosome1 GeneDB CDS 4484078 4484194 . + . mRNA SPAC17C9.09c ; colour "7" ;
chromosome1 GeneDB CDS 4484253 4484321 . + . mRNA SPAC17C9.09c ; colour "7" ;
chromosome1 GeneDB CDS 4484365 4484466 . + . mRNA SPAC17C9.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 4484195 4484200 . + . misc_feature unknown_3681 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB intron 4484195 4484252 . + . intron SPAC17C9.09c ; Alias "tim13" ; db_xref "SPD:31/31D02" ; systematic_id "SPAC17C9.09c" ; primary_name "tim13" ; gene "tim13 ||| SPAC17C9.09c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4484236 4484252 . + . misc_feature unknown_3682 ; colour "6" ; note "ctaatcggtttatctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4484322 4484327 . + . misc_feature unknown_3683 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB intron 4484322 4484364 . + . intron SPAC17C9.09c ; Alias "tim13" ; db_xref "SPD:31/31D02" ; systematic_id "SPAC17C9.09c" ; primary_name "tim13" ; gene "tim13 ||| SPAC17C9.09c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4484350 4484364 . + . misc_feature unknown_3684 ; colour "6" ; note "ctaactagacaaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4484467 4484603 . + . mRNA SPAC17C9.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17C9.09c" ; systematic_id "SPAC17C9.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4484835 4485994 . - . mRNA SPAC17C9.08 ; systematic_id "SPAC17C9.08" ; colour "2" ; gene "pnu1 ||| SPAC17C9.08 ||| nuc1 ||| end1" ; Alias "pnu1" ; db_xref "SPD:44/44A10" ; synonym "nuc1 ||| end1" ; GO "GO:0004520; endodeoxyribonuclease activity
GO:0004529; exodeoxyribonuclease activity
GO:0006308; DNA catabolism
GO:0006310; DNA recombination
GO:0006401; RNA catabolism
GO:0005743; mitochondrial inner membrane
GO:0006995; cellular response to nitrogen starvation
GO:0005739; mitochondrion
GO:0004518; nuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL208C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; primary_name "pnu1" ; product "mitochondrial endodeoxyribonuclease Pnu1" ; EC_number "3.1.30.-" ;
chromosome1 GeneDB CDS 4484835 4485274 . - . mRNA SPAC17C9.08 ; colour "2" ;
chromosome1 GeneDB CDS 4485350 4485596 . - . mRNA SPAC17C9.08 ; colour "2" ;
chromosome1 GeneDB CDS 4485713 4485994 . - . mRNA SPAC17C9.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 4485275 4485291 . - . misc_feature unknown_3685 ; colour "6" ; note "ctaactataacaattag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4485275 4485349 . - . intron SPAC17C9.08 ; Alias "pnu1" ; db_xref "SPD:44/44A10" ; systematic_id "SPAC17C9.08" ; primary_name "pnu1" ; gene "pnu1 ||| SPAC17C9.08 ||| nuc1 ||| end1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4485344 4485349 . - . misc_feature unknown_3686 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4485597 4485611 . - . misc_feature unknown_3687 ; colour "6" ; note "ttaataataaactag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4485597 4485712 . - . intron SPAC17C9.08 ; Alias "pnu1" ; db_xref "SPD:44/44A10" ; systematic_id "SPAC17C9.08" ; primary_name "pnu1" ; gene "pnu1 ||| SPAC17C9.08 ||| nuc1 ||| end1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4485707 4485712 . - . misc_feature unknown_3688 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 4486362 4486561 . - . mRNA SPAC17C9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17C9.07" ; systematic_id "SPAC17C9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4486562 4488067 . - . mRNA SPAC17C9.07 ; systematic_id "SPAC17C9.07" ; colour "7" ; gene "alg8 ||| SPAC17C9.07" ; Alias "alg8" ; db_xref "SPD:24/24D09" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006490; oligosaccharide-lipid intermediate assembly
GO:0042283; dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR067C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "alg8" ; product "glucosyltransferase Alg8 (predicted)" ;
chromosome1 GeneDB CDS 4486562 4488067 . - . mRNA SPAC17C9.07 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4488066 4488122 . - . mRNA SPAC17C9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17C9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4488616 4488783 . - . mRNA SPAC17C9.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17C9.06" ; systematic_id "SPAC17C9.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4488784 4490292 . - . mRNA SPAC17C9.06 ; systematic_id "SPAC17C9.06" ; colour "7" ; gene "sam50 ||| SPAC17C9.06" ; Alias "sam50" ; db_xref "SPD:24/24D12" ; GO "GO:0001401; mitochondrial sorting and assembly machinery complex
GO:0043623; cellular protein complex assembly
GO:0045040; protein import into mitochondrial outer membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "sam50" ; product "mitochondrial sorting and assembly machinery complex subunit Sam50 (predicted)" ;
chromosome1 GeneDB CDS 4488784 4490106 . - . mRNA SPAC17C9.06 ; colour "7" ;
chromosome1 GeneDB CDS 4490188 4490292 . - . mRNA SPAC17C9.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 4490107 4490124 . - . misc_feature unknown_3689 ; colour "6" ; note "ctaaccatcatcaatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4490182 4490187 . - . misc_feature unknown_3690 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4490291 4490376 . - . mRNA SPAC17C9.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17C9.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4490378 4490535 . + . mRNA SPAC17C9.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17C9.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4490536 4491614 . + . mRNA SPAC17C9.05c ; systematic_id "SPAC17C9.05c" ; colour "2" ; gene "pmc3 ||| SPAC17C9.05c ||| med27" ; Alias "pmc3" ; db_xref "SPD:16/16F12" ; synonym "prk1 ||| med27" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:18310102; cv=phenotype; date=20100406 ||| term=phenotype, colony morphology, flocculation; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=name description, Pombe Mediator Component; cv=name_description; date=20091106 ||| term=species distribution, conserved in Eukaryotes; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20091106" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032569; specific transcription from RNA polymerase II promoter" ; primary_name "pmc3" ; product "mediator complex subunit Pmc3/Med27" ;
chromosome1 GeneDB CDS 4490536 4490610 . + . mRNA SPAC17C9.05c ; colour "2" ;
chromosome1 GeneDB CDS 4490648 4490711 . + . mRNA SPAC17C9.05c ; colour "2" ;
chromosome1 GeneDB CDS 4490837 4490914 . + . mRNA SPAC17C9.05c ; colour "2" ;
chromosome1 GeneDB CDS 4490961 4491382 . + . mRNA SPAC17C9.05c ; colour "2" ;
chromosome1 GeneDB CDS 4491432 4491614 . + . mRNA SPAC17C9.05c ; colour "2" ;
chromosome1 GeneDB misc_feature 4490611 4490616 . + . misc_feature unknown_3691 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4490638 4490647 . + . misc_feature unknown_3692 ; colour "6" ; note "ttaattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4490712 4490717 . + . misc_feature unknown_3693 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4490825 4490836 . + . misc_feature unknown_3694 ; colour "6" ; note "ctaattaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4490915 4490920 . + . misc_feature unknown_3695 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4490950 4490960 . + . misc_feature unknown_3696 ; colour "6" ; note "ctaattaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4491383 4491388 . + . misc_feature unknown_3697 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4491418 4491431 . + . misc_feature unknown_3698 ; colour "6" ; note "ctaaccgtgtgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4491952 4492092 . - . mRNA SPAC17C9.03 ; Alias "tif471" ; ID "SPAC17C9.03" ; db_xref "SPD:39/39E03" ; systematic_id "SPAC17C9.03" ; primary_name "tif471" ; gene "tif471 ||| SPAC17C9.03" ; note "mRNA from SPD180" ;
chromosome1 GeneDB CDS_parts 4492093 4496304 . - . mRNA SPAC17C9.03 ; systematic_id "SPAC17C9.03" ; colour "2" ; gene "tif471 ||| SPAC17C9.03" ; Alias "tif471" ; db_xref "SPD:39/39E03" ; GO "GO:0005515; protein binding
GO:0006413; translational initiation
GO:0005198; structural molecule activity
GO:0042273; ribosomal large subunit biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL049C and YGR162W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tif471" ; product "translation initiation factor eIF4G" ;
chromosome1 GeneDB CDS 4492093 4496304 . - . mRNA SPAC17C9.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 4493785 4493826 . - . misc_feature unknown_3699 ; note "predicted binding site tif45 (PMID 12581158)" ;
chromosome1 GeneDB 5'-UTR 4496303 4496540 . - . mRNA SPAC17C9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17C9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4496759 4496969 . + . mRNA SPAC17C9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17C9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4496970 4497789 . + . mRNA SPAC17C9.02c ; systematic_id "SPAC17C9.02c" ; colour "2" ; gene "lys7 ||| SPAC17C9.02c" ; Alias "lys7" ; db_xref "SPD:10/10E11" ; GO "GO:0005737; cytoplasm
GO:0009085; lysine biosynthesis
GO:0008897; phosphopantetheinyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL154C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lys7" ; product "alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7" ;
chromosome1 GeneDB CDS 4496970 4497032 . + . mRNA SPAC17C9.02c ; colour "2" ;
chromosome1 GeneDB CDS 4497076 4497789 . + . mRNA SPAC17C9.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 4497033 4497038 . + . misc_feature unknown_3700 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4497064 4497075 . + . misc_feature unknown_3701 ; colour "6" ; note "ctaatacgttag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 4498132 4500280 . + . mRNA SPAC17C9.01c ; systematic_id "SPAC17C9.01c" ; colour "2" ; gene "nuc2 ||| apc3 ||| SPAC17C9.01c ||| SPAC1851.01" ; Alias "nuc2" ; db_xref "SPD:33/33F10" ; synonym "apc3 ||| SPAC1851.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL084C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cut; qualifier=ts; db_xref=PMID:7622618; date=20100723 ||| term=phenotype, sterile; qualifier=conditional; db_xref=PMID:7622618; date=20100723 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:7622618; date=20100923" ; GO "GO:0005680; anaphase-promoting complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0071851; mitotic G1 cell cycle arrest in response to nitrogen starvation
GO:0008054; cyclin catabolism
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0016567; protein ubiquitination
GO:0030071; regulation of mitotic metaphase/anaphase transition" ; primary_name "nuc2" ; product "anaphase-promoting complex subunit Apc3" ;
chromosome1 GeneDB CDS 4498132 4498435 . + . mRNA SPAC17C9.01c ; colour "2" ;
chromosome1 GeneDB CDS 4498481 4498651 . + . mRNA SPAC17C9.01c ; colour "2" ;
chromosome1 GeneDB CDS 4498758 4500280 . + . mRNA SPAC17C9.01c ; colour "2" ;
chromosome1 GeneDB misc_feature 4498436 4498441 . + . misc_feature unknown_3702 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4498464 4498480 . + . misc_feature unknown_3703 ; colour "6" ; note "ctaactaagttatctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4498652 4498657 . + . misc_feature unknown_3704 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4498737 4498757 . + . misc_feature unknown_3705 ; colour "6" ; note "ctaatatattttgctgaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4499829 4499954 . + . misc_feature unknown_3706 ; note "nominal overlap with cosmid SPAC1851 and cosmid SPAC17C9" ;
chromosome1 GeneDB 3'-UTR 4500281 4500331 . + . mRNA SPAC17C9.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17C9.01c" ; systematic_id "SPAC17C9.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4500554 4500633 . + . mRNA SPAC1851.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1851.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4500634 4501536 . + . mRNA SPAC1851.02 ; systematic_id "SPAC1851.02" ; colour "7" ; gene "SPAC1851.02" ; Alias "slc1" ; db_xref "SPD:12/12D10" ; GO "GO:0003841; 1-acylglycerol-3-phosphate O- acyltransferase activity
GO:0046474; glycerophospholipid biosynthetic process
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDL052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "slc1" ; product "1-acylglycerol-3-phosphate O-acyltransferase Slc1 (predicted)" ; EC_number "2.3.1.51" ;
chromosome1 GeneDB CDS 4500634 4500959 . + . mRNA SPAC1851.02 ; colour "7" ;
chromosome1 GeneDB CDS 4501023 4501536 . + . mRNA SPAC1851.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 4500960 4500965 . + . misc_feature unknown_3707 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4501002 4501022 . + . misc_feature unknown_3708 ; colour "6" ; note "ctgacttacaattttaattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4501537 4501673 . + . mRNA SPAC1851.02 ; ID "SPAC1851.02" ; db_xref "SPD:12/12D10" ; systematic_id "SPAC1851.02" ; gene "SPAC1851.02" ; note "mRNA from AU007963" ;
chromosome1 GeneDB 5'-UTR 4502333 4502407 . + . mRNA SPAC1851.03 ; Alias "ckb1" ; ID "SPAC1851.03" ; systematic_id "SPAC1851.03" ; gene "ckb1 ||| SPAC1851.03" ; primary_name "ckb1" ; note "mRNA from AU011062" ;
chromosome1 GeneDB CDS_parts 4502408 4503387 . + . mRNA SPAC1851.03 ; systematic_id "SPAC1851.03" ; colour "2" ; gene "ckb1 ||| SPAC1851.03" ; Alias "ckb1" ; db_xref "SPD:14/14B01" ; GO "GO:0005956; protein kinase CK2 complex
GO:0019887; protein kinase regulator activity
GO:0006468; protein amino acid phosphorylation
GO:0006383; transcription from RNA polymerase III promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR039W and YGL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "ckb1" ; product "CK2 family regulatory subunit Ckb1" ;
chromosome1 GeneDB CDS 4502408 4502430 . + . mRNA SPAC1851.03 ; colour "2" ;
chromosome1 GeneDB CDS 4502510 4502789 . + . mRNA SPAC1851.03 ; colour "2" ;
chromosome1 GeneDB CDS 4502995 4503387 . + . mRNA SPAC1851.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 4502431 4502436 . + . misc_feature unknown_3709 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB intron 4502431 4502509 . + . intron SPAC1851.03 ; Alias "ckb1" ; db_xref "EMBL:X74274 ||| SPD:14/14B01" ; systematic_id "SPAC1851.03" ; gene "ckb1 ||| SPAC1851.03" ; primary_name "ckb1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4502500 4502509 . + . misc_feature unknown_3710 ; colour "6" ; note "ttaattgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4502790 4502795 . + . misc_feature unknown_3711 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB intron 4502790 4502994 . + . intron SPAC1851.03 ; Alias "ckb1" ; db_xref "EMBL:X74274 ||| SPD:14/14B01" ; systematic_id "SPAC1851.03" ; gene "ckb1 ||| SPAC1851.03" ; primary_name "ckb1" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4502979 4502994 . + . misc_feature unknown_3712 ; colour "6" ; note "ctaacatcctttctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4503388 4503468 . + . mRNA SPAC1851.03 ; Alias "ckb1" ; ID "SPAC1851.03" ; db_xref "EMBL:X74274 ||| SPD:14/14B01" ; systematic_id "SPAC1851.03" ; gene "ckb1 ||| SPAC1851.03" ; primary_name "ckb1" ;
chromosome1 GeneDB 3'-UTR 4503472 4503682 . - . mRNA SPAC1851.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1851.04c" ; systematic_id "SPAC1851.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4503683 4506841 . - . mRNA SPAC1851.04c ; systematic_id "SPAC1851.04c" ; colour "2" ; gene "SPAC1851.04c ||| SPAC27D7.01c" ; Alias "ric1" ; db_xref "SPD:47/47H09" ; synonym "SPAC27D7.01c" ; GO "GO:0000139; Golgi membrane
GO:0006886; intracellular protein transport
; retrograde transport, endosome to Golgi
GO:0032045; guanyl-nucleotide exchange factor complex
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YLR039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20101005 ||| term=phenotype, sensitive to valproic acid; allele=vas3-1; db_xref=PMID:20623139; date=20101005 ||| term=human KIAA1432 ortholog; date=20101005 ||| term=target is Ryh1; db_xref=PMID:20623139; date=20101005 ||| term=target of Ppk19; db_xref=PMID:20623139; date=20101005" ; primary_name "ric1" ; product "Ypt/Rab-specific guanyl-nucleotide exchange factor (GEF) subunit Ric1" ;
chromosome1 GeneDB CDS 4503683 4506841 . - . mRNA SPAC1851.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 4505395 4505498 . + . misc_feature unknown_3713 ; note "nominal overlap with cosmid SPAC27D7 with cosmid SPAC1851" ;
chromosome1 GeneDB 5'-UTR 4506840 4506879 . - . mRNA SPAC1851.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1851.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4507266 4507597 . - . mRNA SPAC27D7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27D7.02c" ; systematic_id "SPAC27D7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4507598 4509850 . - . mRNA SPAC27D7.02c ; db_xref "SPD:28/28B02" ; systematic_id "SPAC27D7.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=GRIP domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR309C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0005829; cytosol" ; gene "SPAC27D7.02c" ; product "GRIP domain protein (predicted)" ;
chromosome1 GeneDB CDS 4507598 4509850 . - . mRNA SPAC27D7.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4509849 4509905 . - . mRNA SPAC27D7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27D7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4510983 4511039 . - . mRNA SPAC27D7.03c ; Alias "mei2" ; ID "SPAC27D7.03c" ; db_xref "SPD:33/33G01" ; systematic_id "SPAC27D7.03c" ; primary_name "mei2" ; gene "mei2 ||| SPAC27D7.03c" ; note "mRNA from AU011500" ;
chromosome1 GeneDB CDS_parts 4511040 4513292 . - . mRNA SPAC27D7.03c ; systematic_id "SPAC27D7.03c" ; colour "2" ; gene "mei2 ||| SPAC27D7.03c" ; Alias "mei2" ; db_xref "SPD:33/33G01" ; GO "GO:0033620; Mei2 nuclear dot
GO:0034064; Tor2-Mei2-Ste11 complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004860; protein kinase inhibitor
GO:0007127; meiosis I
GO:0045836; positive regulation of meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:11423126; cv=localization; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=modification, ubiquitinated; cv=pt_mod; db_xref=PMID:11702950; date=20071120 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:11702950; date=20090213 ||| term=target of Ran1; qualifier=phosphorylated_by; date=20100826 ||| term=target of Pat1; qualifier=phosphorylated_by; residue=Ser438|Ser527; date=19700101 ||| term=gene expression, transcriptionally regulated by Ste11; cv=gene_ex; date=19700101" ; primary_name "mei2" ; product "RNA-binding protein involved in meiosis Mei2" ;
chromosome1 GeneDB CDS 4511040 4513292 . - . mRNA SPAC27D7.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4513291 4514964 . - . mRNA SPAC27D7.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27D7.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4513293 4516069 . - . misc_feature unknown_3714 ; note "possible gene free region; low-complexity" ;
chromosome1 GeneDB misc_RNA 4516070 4517070 . + . misc_RNA SPNCRNA.130 ; systematic_id "SPNCRNA.130" ; gene "SPNCRNA.130" ; note "Overlapping omt1+ and omt2+ genes are required for spore wall maturation in Schizosaccharomyces pombe" ; db_xref "PMID:3004970" ; Alias "omt3" ; controlled_curation "term=; qualifier=predicted; db_xref=PMID:3004970; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:3004970; date=20050412" ; primary_name "omt3" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB 5'-UTR 4516070 4517541 . + . mRNA SPAC27D7.04 ; ID "SPAC27D7.04" ; systematic_id "SPAC27D7.04" ;
chromosome1 GeneDB CDS_parts 4517542 4517832 . + . mRNA SPAC27D7.04 ; systematic_id "SPAC27D7.04" ; colour "2" ; db_xref "SPD:01/01D05" ; Alias "omt2" ; GO "GO:0005619; spore wall (sensu Fungi)
GO:0008124; 4-alpha-hydroxytetrahydrobiopterin dehydratase activity
GO:0030476; spore wall assembly (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "omt2" ; product "4-alpha-hydroxytetrahydrobiopterin dehydratase (predicted)" ; EC_number "4.2.1.96" ;
chromosome1 GeneDB CDS 4517542 4517832 . + . mRNA SPAC27D7.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4517833 4518616 . + . mRNA SPAC27D7.04 ; ID "SPAC27D7.04" ; db_xref "SPD:01/01D05" ; systematic_id "SPAC27D7.04" ;
chromosome1 GeneDB CDS_parts 4517973 4518296 . - . mRNA SPAC27D7.05c ; systematic_id "SPAC27D7.05c" ; colour "2" ; db_xref "SPD:01/01G03" ; Alias "apc14" ; synonym "omt1" ; GO "GO:0030476; fungal-type spore wall assembly
GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Mei4; db_xref=PMID:12786945; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "apc14" ; product "anaphase-promoting complex subunit Apc14" ;
chromosome1 GeneDB CDS 4517973 4518296 . - . mRNA SPAC27D7.05c ; colour "2" ;
chromosome1 GeneDB promoter 4518488 4518498 . - . promoter SPAC27D7.05c ; Alias "apc14" ; primary_name "apc14" ; gene "apc14 ||| omt1 ||| SPAC27D7.05c" ; note "FLEX-like sequence (PMID:12477395)" ;
chromosome1 GeneDB 5'-UTR 4519036 4519045 . + . mRNA SPAC27D7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27D7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4519046 4520071 . + . mRNA SPAC27D7.06 ; db_xref "SPD:15/15D08" ; systematic_id "SPAC27D7.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human ETFA ortholog; date=20100718" ; colour "10" ; GO "GO:0005759; mitochondrial matrix
GO:0009055; electron carrier activity" ; gene "SPAC27D7.06" ; product "electron transfer flavoprotein alpha subunit (predicted)" ;
chromosome1 GeneDB CDS 4519046 4520071 . + . mRNA SPAC27D7.06 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4520072 4520130 . + . mRNA SPAC27D7.06 ; ID "SPAC27D7.06" ; db_xref "EMBL:D89139 ||| SPD:15/15D08" ; systematic_id "SPAC27D7.06" ; gene "SPAC27D7.06" ; note "mRNA from SPD139" ;
chromosome1 GeneDB 3'-UTR 4520244 4520537 . - . mRNA SPAC27D7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27D7.07c" ; systematic_id "SPAC27D7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4520538 4520990 . - . mRNA SPAC27D7.07c ; systematic_id "SPAC27D7.07c" ; colour "2" ; gene "smd1 ||| SPAC27D7.07c" ; Alias "smd1" ; db_xref "SPD:04/04A04" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000243; commitment complex
GO:0005685; snRNP U1
GO:0003729; mRNA binding
GO:0000395; nuclear mRNA 5'-splice site recognition
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YGR074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "smd1" ; product "Sm snRNP core protein Smd1" ;
chromosome1 GeneDB CDS 4520538 4520827 . - . mRNA SPAC27D7.07c ; colour "2" ;
chromosome1 GeneDB CDS 4520884 4520933 . - . mRNA SPAC27D7.07c ; colour "2" ;
chromosome1 GeneDB CDS 4520977 4520990 . - . mRNA SPAC27D7.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 4520828 4520844 . - . misc_feature unknown_3715 ; colour "6" ; note "cttaccaaatcgcgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4520878 4520883 . - . misc_feature unknown_3716 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4520934 4520946 . - . misc_feature unknown_3717 ; colour "6" ; note "ctaacgagtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4520971 4520976 . - . misc_feature unknown_3718 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4520989 4521012 . - . mRNA SPAC27D7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27D7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4521452 4521471 . - . mRNA SPAC27D7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27D7.08c" ; systematic_id "SPAC27D7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4521472 4522950 . - . mRNA SPAC27D7.08c ; db_xref "SPD:23/23H03" ; systematic_id "SPAC27D7.08c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human MET10D ortholog; date=20100301" ; GO "GO:0008168; methyltransferase activity" ; gene "SPAC27D7.08c" ; product "DUF890 family protein" ; EC_number "2.1.1.-" ;
chromosome1 GeneDB CDS 4521472 4521846 . - . mRNA SPAC27D7.08c ; colour "10" ;
chromosome1 GeneDB CDS 4521903 4521992 . - . mRNA SPAC27D7.08c ; colour "10" ;
chromosome1 GeneDB CDS 4522040 4522416 . - . mRNA SPAC27D7.08c ; colour "10" ;
chromosome1 GeneDB CDS 4522465 4522619 . - . mRNA SPAC27D7.08c ; colour "10" ;
chromosome1 GeneDB CDS 4522666 4522676 . - . mRNA SPAC27D7.08c ; colour "10" ;
chromosome1 GeneDB CDS 4522755 4522830 . - . mRNA SPAC27D7.08c ; colour "10" ;
chromosome1 GeneDB CDS 4522877 4522950 . - . mRNA SPAC27D7.08c ; colour "10" ;
chromosome1 GeneDB misc_feature 4521847 4521865 . - . misc_feature unknown_3719 ; colour "6" ; note "ctaacaaaaggatccaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4521856 4521865 . - . misc_feature unknown_3720 ; colour "6" ; note "ctaacaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4521897 4521902 . - . misc_feature unknown_3721 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4521993 4522010 . - . misc_feature unknown_3722 ; colour "6" ; note "ttaacttatatctgtaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4522034 4522039 . - . misc_feature unknown_3723 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4522417 4522436 . - . misc_feature unknown_3724 ; colour "6" ; note "ctaattactcaaaactctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4522459 4522464 . - . misc_feature unknown_3725 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4522620 4522635 . - . misc_feature unknown_3726 ; colour "6" ; note "ataaccaacttttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4522660 4522665 . - . misc_feature unknown_3727 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4522677 4522691 . - . misc_feature unknown_3728 ; colour "6" ; note "ctaattcatttaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4522749 4522754 . - . misc_feature unknown_3729 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4522831 4522846 . - . misc_feature unknown_3730 ; colour "6" ; note "cttacctataaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4522871 4522876 . - . misc_feature unknown_3731 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4522949 4523050 . - . mRNA SPAC27D7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27D7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4523380 4523387 . - . mRNA SPAC27D7.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27D7.09c" ; systematic_id "SPAC27D7.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4523388 4524539 . - . mRNA SPAC27D7.09c ; db_xref "SPD:51/51F03" ; systematic_id "SPAC27D7.09c" ; synonym "SPAC27D7.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe and SPAC27D7.11c and SPBC3D6.02 (paralogs); date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070723 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=warning, sequence error in genomic data; date=20090202 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, the sequence previously referred to as SPAC27D7.10c was a duplication caused by missassembly of the cosmid; cv=warning; date=20100125" ; colour "10" ; product "But2 family protein" ;
chromosome1 GeneDB CDS 4523388 4524539 . - . mRNA SPAC27D7.09c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4524540 4524743 . - . mRNA SPAC27D7.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27D7.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 4524914 4525142 . + . LTR unknown_3732 ; note "155 (+1) 1 227 TF1" ;
chromosome1 GeneDB LTR 4525245 4525599 . + . LTR unknown_3733 ; colour "4" ; note "tf1-like fragmant" ;
chromosome1 GeneDB LTR 4525577 4525926 . + . LTR unknown_3734 ; note "513 (+1) 8 358 TF1" ;
chromosome1 GeneDB misc_feature 4526059 4529095 . + . misc_feature unknown_3735 ; note "This repeat region is caused by a missassembly and will be removed from the genomic sequence shortly." ;
chromosome1 GeneDB misc_feature 4526425 4527576 . - . misc_feature unknown_3736 ; note "previously annotated as SPAC27D7.10c, but this region will shortly be merged will shortly be merged. SPAC27D7.10c is equivalent to SPAC27D7.09c" ;
chromosome1 GeneDB misc_feature 4529096 4529247 . - . misc_feature unknown_3737 ; note "small duplicated region with SPCC550 AL023592 S.pombe chromosome III cosmid c550." ;
chromosome1 GeneDB 3'-UTR 4529389 4529461 . - . mRNA SPAC27D7.11c ; ID "SPAC27D7.11c" ; db_xref "SPD:51/51D08" ; systematic_id "SPAC27D7.11c" ; gene "SPAC27D7.11c" ; note "mRNA from AU013708" ;
chromosome1 GeneDB CDS_parts 4529462 4530853 . - . mRNA SPAC27D7.11c ; db_xref "SPD:51/51D08" ; systematic_id "SPAC27D7.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAC27D7.09c and SPBC3D6.02 (paralogs); date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070723 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC27D7.11c" ; product "But2 family protein" ;
chromosome1 GeneDB CDS 4529462 4530853 . - . mRNA SPAC27D7.11c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4530854 4531031 . - . mRNA SPAC27D7.11c ; ID "SPAC27D7.11c" ; systematic_id "SPAC27D7.11c" ; gene "SPAC27D7.11c" ; note "mRNA from AU009655" ;
chromosome1 GeneDB misc_RNA 4531070 4531631 . + . misc_RNA SPNCRNA.248 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.248" ; synonym "SPNG869" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB tRNA 4532857 4532927 . + . tRNA SPATRNAASP.01 ; systematic_id "SPATRNAASP.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033450; GTC codon-amino acid adaptor activity" ; product "tRNA Aspartic acid" ; note "tRNA Asp anticodon GTC, Cove score 70.49" ;
chromosome1 GeneDB 3'-UTR 4533443 4533516 . - . mRNA SPAC27D7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC27D7.12c" ; systematic_id "SPAC27D7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4533517 4534248 . - . mRNA SPAC27D7.12c ; systematic_id "SPAC27D7.12c" ; colour "2" ; db_xref "SPD:08/08G09" ; Alias "but1" ; synonym "SPAC27D7.12 ||| mug107" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14623327; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=thioredoxin family; date=20081111 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:14623327; date=20081111 ||| term=species distribution, orthologs cannot be distinguished; date=20091020" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:0005634; nucleus" ; primary_name "but1" ; product "neddylation pathway protein But1" ;
chromosome1 GeneDB CDS 4533517 4534248 . - . mRNA SPAC27D7.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4534247 4534378 . - . mRNA SPAC27D7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC27D7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4534674 4536686 . - . mRNA SPAC27D7.13c ; systematic_id "SPAC27D7.13c" ; colour "2" ; gene "ssm4 ||| SPAC27D7.13c ||| SPAC637.01c" ; Alias "ssm4" ; db_xref "SPD:27/27E02" ; synonym "SPAC637.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:9167972; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=orthologous to S. cerevisiae YPL174C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030981; cortical microtubule cytoskeleton
GO:0005881; cytoplasmic microtubule
GO:0005869; dynactin complex
GO:0005816; spindle pole body
GO:0005816; spindle pole body
GO:0008017; microtubule binding
GO:0051010; microtubule plus-end binding
GO:0005515; protein binding
GO:0000753; cellular morphogenesis during conjugation with cellular fusion
GO:0000753; cellular morphogenesis during conjugation with cellular fusion
GO:0030989; horsetail nuclear movement
GO:0007127; meiosis I
GO:0007131; meiotic recombination
GO:0000743; nuclear migration during conjugation with cellular fusion
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030437; sporulation (sensu Fungi)
GO:0007129; synapsis" ; primary_name "ssm4" ; product "p150-Glued" ;
chromosome1 GeneDB CDS 4534674 4536686 . - . mRNA SPAC27D7.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 4535798 4541286 . + . misc_feature unknown_3738 ; note "nominal overlap with cosmid SPAC27D7 and cosmid SPAC637" ;
chromosome1 GeneDB 3'-UTR 4536975 4537134 . - . mRNA SPAC27D7.14c ; Alias "tpr1" ; ID "SPAC27D7.14c" ; db_xref "SPD:39/39B05" ; systematic_id "SPAC27D7.14c" ; primary_name "tpr1" ; gene "tpr1 ||| SPAC27D7.14c ||| SPAC637.02c" ; note "mRNA from AF047464" ;
chromosome1 GeneDB CDS_parts 4537135 4540254 . - . mRNA SPAC27D7.14c ; systematic_id "SPAC27D7.14c" ; colour "2" ; gene "tpr1 ||| SPAC27D7.14c ||| SPAC637.02c" ; Alias "tpr1" ; db_xref "SPD:39/39B05" ; synonym "SPAC637.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOL145C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0016593; Cdc73/Paf1 complex
GO:0006813; potassium ion transport" ; primary_name "tpr1" ; product "RNA polymerase II associated Paf1 complex subunit Tpr1" ;
chromosome1 GeneDB CDS 4537135 4540254 . - . mRNA SPAC27D7.14c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4540255 4540298 . - . mRNA SPAC27D7.14c ; Alias "tpr1" ; ID "SPAC27D7.14c" ; systematic_id "SPAC27D7.14c" ; primary_name "tpr1" ; gene "tpr1 ||| SPAC27D7.14c ||| SPAC637.02c" ; note "mRNA from AU010425" ;
chromosome1 GeneDB 5'-UTR 4542132 4542553 . + . mRNA SPAC637.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC637.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4542554 4543363 . + . mRNA SPAC637.03 ; db_xref "SPD:10/10C11" ; systematic_id "SPAC637.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0016021; integral to membrane" ; colour "10" ; gene "SPAC637.03" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 4542554 4543363 . + . mRNA SPAC637.03 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4543364 4543396 . + . mRNA SPAC637.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC637.03" ; systematic_id "SPAC637.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4543838 4544073 . + . mRNA SPAC637.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC637.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4544074 4546757 . + . mRNA SPAC637.04 ; db_xref "SPD:38/38H10" ; systematic_id "SPAC637.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006897; endocytosis
GO:0005737; cytoplasm
GO:0006886; intracellular protein transport" ; gene "SPAC637.04" ; product "cargo-transport protein Ypp1 (predicted)" ;
chromosome1 GeneDB CDS 4544074 4544082 . + . mRNA SPAC637.04 ; colour "7" ;
chromosome1 GeneDB CDS 4544122 4544233 . + . mRNA SPAC637.04 ; colour "7" ;
chromosome1 GeneDB CDS 4544290 4546757 . + . mRNA SPAC637.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 4544083 4544088 . + . misc_feature unknown_3739 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4544109 4544121 . + . misc_feature unknown_3740 ; colour "6" ; note "ctgactgatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4544234 4544239 . + . misc_feature unknown_3741 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4544275 4544289 . + . misc_feature unknown_3742 ; colour "6" ; note "ctaacctttttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4546758 4546811 . + . mRNA SPAC637.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC637.04" ; systematic_id "SPAC637.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4546865 4547079 . - . mRNA SPAC637.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC637.05c" ; systematic_id "SPAC637.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4547080 4548828 . - . mRNA SPAC637.05c ; systematic_id "SPAC637.05c" ; colour "2" ; gene "vma2 ||| SPAC637.05c" ; Alias "vma2" ; db_xref "SPD:33/33D05" ; GO "GO:0000221; hydrogen-transporting ATPase V1 domain
GO:0046961; hydrogen ion transporting ATPase activity, rotational mechanism
GO:0007035; vacuolar acidification
GO:0015991; ATP hydrolysis coupled proton transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, renal tubular acidosis; date=20061010 ||| term=disease associated, deafness; date=20080105 ||| term=orthologous to S. cerevisiae YBR127C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "vma2" ; product "V-type ATPase V1 subunit B" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB CDS 4547080 4547579 . - . mRNA SPAC637.05c ; colour "2" ;
chromosome1 GeneDB CDS 4547625 4548474 . - . mRNA SPAC637.05c ; colour "2" ;
chromosome1 GeneDB CDS 4548568 4548616 . - . mRNA SPAC637.05c ; colour "2" ;
chromosome1 GeneDB CDS 4548675 4548746 . - . mRNA SPAC637.05c ; colour "2" ;
chromosome1 GeneDB CDS 4548788 4548828 . - . mRNA SPAC637.05c ; colour "2" ;
chromosome1 GeneDB misc_feature 4547580 4547594 . - . misc_feature unknown_3743 ; colour "6" ; note "ctaattttttcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4547619 4547624 . - . misc_feature unknown_3744 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4548475 4548485 . - . misc_feature unknown_3745 ; colour "6" ; note "ctaattaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4548475 4548567 . - . intron SPAC637.05c ; Alias "vma2" ; db_xref "SPD:33/33D05" ; systematic_id "SPAC637.05c" ; primary_name "vma2" ; gene "vma2 ||| SPAC637.05c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4548562 4548567 . - . misc_feature unknown_3746 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4548617 4548631 . - . misc_feature unknown_3747 ; colour "6" ; note "ctaactctgctatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4548617 4548674 . - . intron SPAC637.05c ; Alias "vma2" ; db_xref "SPD:33/33D05" ; systematic_id "SPAC637.05c" ; primary_name "vma2" ; gene "vma2 ||| SPAC637.05c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4548669 4548674 . - . misc_feature unknown_3748 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4548747 4548758 . - . misc_feature unknown_3749 ; colour "6" ; note "ttaacaatttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4548747 4548787 . - . intron SPAC637.05c ; Alias "vma2" ; db_xref "SPD:33/33D05" ; systematic_id "SPAC637.05c" ; primary_name "vma2" ; gene "vma2 ||| SPAC637.05c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4548782 4548787 . - . misc_feature unknown_3750 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4548827 4548841 . - . mRNA SPAC637.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC637.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4549809 4549925 . + . mRNA SPAC637.06 ; ID "SPAC637.06" ; systematic_id "SPAC637.06" ; gene "SPAC637.06" ; note "mRNA from AU010869" ;
chromosome1 GeneDB CDS_parts 4549926 4550969 . + . mRNA SPAC637.06 ; db_xref "SPD:15/15G11" ; systematic_id "SPAC637.06" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0042125; protein amino acid galactosylation" ; gene "SPAC637.06" ; product "alpha-1,2-galactosyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB CDS 4549926 4550969 . + . mRNA SPAC637.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4550970 4551242 . + . mRNA SPAC637.06 ; ID "SPAC637.06" ; db_xref "SPD:15/15G11" ; systematic_id "SPAC637.06" ; gene "SPAC637.06" ; note "mRNA from SPD166" ;
chromosome1 GeneDB CDS_parts 4551851 4553554 . + . mRNA SPAC637.07 ; systematic_id "SPAC637.07" ; colour "2" ; gene "moe1 ||| SPAC637.07" ; Alias "moe1" ; db_xref "SPD:35/35D10" ; GO "GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003743; translation initiation factor activity
GO:0030437; ascospore formation
GO:0071313; cellular response to caffeine
GO:0070196; eIF3 complex assembly
GO:0006461; protein complex assembly
GO:0006413; translational initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11705997; date=20081211 ||| term=phenotype, sensitive to caffeine; qualifier=deletion; cv=phenotype; date=20081211 ||| term=phenotype, microtubule organization defects; qualifier=deletion; cv=phenotype; db_xref=PMID:9892665; date=20090926 ||| term=phenotype, resistance to microtubule depolymerizing drugs; qualifier=deletion; db_xref=PMID:9892665; date=20090926 ||| term=phenotype, spindle assembly abnormal; cv=phenotype; qualifier=deletion; db_xref=PMID:9892665; date=20090926" ; primary_name "moe1" ; product "translation initiation factor eIF3d Moe1" ;
chromosome1 GeneDB CDS 4551851 4553554 . + . mRNA SPAC637.07 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4553555 4553632 . + . mRNA SPAC637.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC637.07" ; systematic_id "SPAC637.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4553904 4554114 . + . mRNA SPAC637.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC637.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4554115 4555068 . + . mRNA SPAC637.08 ; db_xref "SPD:13/13D10" ; systematic_id "SPAC637.08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YGL091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "7" ; GO "GO:0016226; iron-sulfur cluster assembly
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0016887; ATPase activity
GO:0051539; 4 iron, 4 sulfur cluster binding
GO:0005524; ATPase binding" ; gene "SPAC637.08" ; product "iron-sulfur cluster assembly ATPase Nbp35 (predicted)" ;
chromosome1 GeneDB CDS 4554115 4555068 . + . mRNA SPAC637.08 ; colour "7" ;
chromosome1 GeneDB misc_RNA 4554192 4555181 . - . misc_RNA SPNCRNA.563 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.563" ; synonym "SPNG2AF4" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB 3'-UTR 4555069 4555164 . + . mRNA SPAC637.08 ; ID "SPAC637.08" ; db_xref "SPD:13/13D10" ; systematic_id "SPAC637.08" ; gene "SPAC637.08" ; note "mRNA from AU008298" ;
chromosome1 GeneDB CDS_parts 4555423 4557294 . + . mRNA SPAC637.09 ; db_xref "SPD:26/26C11" ; systematic_id "SPAC637.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR276C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0006396; RNA processing
GO:0005634; nucleus
GO:0008408; 3'-5' exonuclease activity
GO:0000467; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0034415; tRNA 3'trailer cleavage, exonucleolytic
GO:0034476; U5 snRNA 3' end-processing" ; gene "SPAC637.09" ; product "ribonuclease H70 (predicted)" ;
chromosome1 GeneDB CDS 4555423 4557294 . + . mRNA SPAC637.09 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4557295 4557390 . + . mRNA SPAC637.09 ; ID "SPAC637.09" ; db_xref "SPD:26/26C11" ; systematic_id "SPAC637.09" ; gene "SPAC637.09" ; note "mRNA from AU008601" ;
chromosome1 GeneDB 3'-UTR 4557641 4557720 . - . mRNA SPAC637.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC637.10c" ; systematic_id "SPAC637.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4557721 4558636 . - . mRNA SPAC637.10c ; systematic_id "SPAC637.10c" ; colour "2" ; gene "rpn10 ||| pus1 ||| SPAC637.10c" ; Alias "rpn10" ; db_xref "SPD:12/12G01" ; synonym "pus1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR200W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0043130; ubiquitin binding
GO:0042177; negative regulation of protein catabolism
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; primary_name "rpn10" ; product "19S proteasome regulatory subunit Rpn10" ;
chromosome1 GeneDB CDS 4557721 4557955 . - . mRNA SPAC637.10c ; colour "2" ;
chromosome1 GeneDB CDS 4558019 4558342 . - . mRNA SPAC637.10c ; colour "2" ;
chromosome1 GeneDB CDS 4558422 4558568 . - . mRNA SPAC637.10c ; colour "2" ;
chromosome1 GeneDB CDS 4558611 4558636 . - . mRNA SPAC637.10c ; colour "2" ;
chromosome1 GeneDB misc_feature 4557956 4557968 . - . misc_feature unknown_3751 ; colour "6" ; note "ttaacaattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4558013 4558018 . - . misc_feature unknown_3752 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4558343 4558355 . - . misc_feature unknown_3753 ; colour "6" ; note "ctaatcatattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4558416 4558421 . - . misc_feature unknown_3754 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4558569 4558580 . - . misc_feature unknown_3755 ; colour "6" ; note "ctaacatggcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4558605 4558610 . - . misc_feature unknown_3756 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4558635 4558688 . - . mRNA SPAC637.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC637.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4558911 4559292 . + . mRNA SPAC637.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC637.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4559293 4561236 . + . mRNA SPAC637.11 ; systematic_id "SPAC637.11" ; colour "2" ; gene "suv3 ||| SPAC637.11 ||| pah1 ||| rpm2" ; note "RNA processosome mitochondrial, name description" ; Alias "rpm2" ; db_xref "SPD:26/26H08" ; synonym "pah1 ||| suv3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL029W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005759; mitochondrial matrix
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0006401; RNA catabolic process
GO:0000965; mitochondrial RNA 3'-end processing" ; primary_name "rpm2" ; product "mitochondrial ATP-dependent RNA helicase Rpm2" ;
chromosome1 GeneDB CDS 4559293 4561236 . + . mRNA SPAC637.11 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4561237 4561271 . + . mRNA SPAC637.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC637.11" ; systematic_id "SPAC637.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4561384 4562775 . - . mRNA SPAC637.12c ; systematic_id "SPAC637.12c" ; colour "2" ; gene "mst1 ||| SPAC637.12c" ; Alias "mst1" ; db_xref "SPD:21/21E06" ; synonym "kat5" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0035267; NuA4 histone acetyltransferase complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034508; centromere complex assembly
GO:0034508; centromere complex assembly
GO:0034508; centromere complex assembly
GO:0000070; mitotic sister chromatid segregation
GO:0006302; double-strand break repair
GO:0006302; double-strand break repair
GO:0043967; histone H4 acetylation
GO:0048478; replication fork protection
GO:0048478; replication fork protection
GO:0048478; replication fork protection
GO:0048478; replication fork protection
GO:0048478; replication fork protection
GO:0010485; histone H4 acetyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16199868; date=19700101 ||| term=chromodomain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR244W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20090212 ||| term=human Kat5 ortholog; date=20091221" ; primary_name "mst1" ; product "KAT5 family histone acetyltransferase Mst1" ;
chromosome1 GeneDB CDS 4561384 4562775 . - . mRNA SPAC637.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4562774 4562811 . - . mRNA SPAC637.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC637.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4563693 4563893 . - . mRNA SPAC637.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC637.13c" ; systematic_id "SPAC637.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4563894 4565390 . - . mRNA SPAC637.13c ; db_xref "SPD:24/24C03" ; systematic_id "SPAC637.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL047C and YIL105C; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005886; plasma membrane
GO:0035091; phosphoinositide binding
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0048015; phosphoinositide-mediated signaling
GO:0033554; cellular response to stress" ; gene "SPAC637.13c" ; product "cytoskeletal signaling protein (predicted)" ;
chromosome1 GeneDB CDS 4563894 4565390 . - . mRNA SPAC637.13c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4565389 4565396 . - . mRNA SPAC637.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC637.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4565700 4566208 . + . misc_RNA SPNCRNA.249 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.249" ; synonym "SPNG873" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 4566386 4567306 . + . mRNA SPAC31F12.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC31F12.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4567307 4570123 . + . mRNA SPAC31F12.01 ; systematic_id "SPAC31F12.01" ; colour "2" ; gene "zds1 ||| SPAC637.14 ||| SPAC31F12.01 ||| mug88" ; Alias "zds1" ; db_xref "SPD:47/47C05" ; synonym "SPAC637.14 ||| mug88" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR273C and YML109W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005938; cell cortex
GO:0030428; cell septum
GO:0005737; cytoplasm
GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0071277; cellular response to calcium ion
GO:0030437; sporulation (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)
GO:0008601; protein phosphatase type 2A regulator activity
GO:0032880; regulation of protein localization
GO:0007165; signal transduction" ; primary_name "zds1" ; product "zds family protein phosphatase type A regulator Zds1 (predicted)" ;
chromosome1 GeneDB CDS 4567307 4570123 . + . mRNA SPAC31F12.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 4567775 4571702 . + . misc_feature unknown_3757 ; note "nominal overlap with cosmid SPAC637 and cosmid SPAC31F12" ;
chromosome1 GeneDB 3'-UTR 4570124 4570291 . + . mRNA SPAC31F12.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC31F12.01" ; systematic_id "SPAC31F12.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4570458 4570497 . - . mRNA SPAC12B10.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12B10.01c" ; systematic_id "SPAC12B10.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4570498 4575441 . - . mRNA SPAC12B10.01c ; systematic_id "SPAC12B10.01c" ; colour "7" ; gene "SPAC637.15c ||| SPAC31F12.02c ||| SPAC12B10.01c" ; Alias "SPAC637.15c" ; db_xref "SPD:31/31A07" ; synonym "SPAC31F12.02c ||| SPAC637.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YKL010C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination" ; primary_name "SPAC637.15c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB CDS 4570498 4575441 . - . mRNA SPAC12B10.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 4572311 4572397 . + . misc_feature unknown_3758 ; note "nominal overlap with cosmid SPAC31F12 and cosmid SPAC12B10" ;
chromosome1 GeneDB 5'-UTR 4575440 4575630 . - . mRNA SPAC12B10.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12B10.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4576228 4576935 . - . mRNA SPAC12B10.02c ; db_xref "SPD:08/08D04" ; systematic_id "SPAC12B10.02c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL117W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005783; endoplasmic reticulum
GO:0006887; exocytosis
GO:0006817; phosphate transport" ; colour "7" ; gene "SPAC12B10.02c" ; product "endoplasmic reticulum resident protein required for packaging into COPII vesicles (predicted)" ;
chromosome1 GeneDB CDS 4576228 4576935 . - . mRNA SPAC12B10.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4576936 4577002 . - . mRNA SPAC12B10.02c ; ID "SPAC12B10.02c" ; systematic_id "SPAC12B10.02c" ; gene "SPAC12B10.02c" ; note "mRNA from spc07227" ;
chromosome1 GeneDB 5'-UTR 4578323 4578626 . + . mRNA SPAC12B10.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12B10.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4578627 4580258 . + . mRNA SPAC12B10.03 ; systematic_id "SPAC12B10.03" ; colour "2" ; gene "SPAC12B10.03" ; Alias "bun62" ; db_xref "SPD:26/26A10" ; synonym "wdr20" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:2000158; positive regulation of ubiquitin- specific protease activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Binding Upb Nine of 62 kDa; cv=name_description; date=20100415" ; primary_name "bun62" ; product "WD repeat protein, human WDR20 family, Bun62" ;
chromosome1 GeneDB CDS 4578627 4580258 . + . mRNA SPAC12B10.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4580259 4580633 . + . mRNA SPAC12B10.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12B10.03" ; systematic_id "SPAC12B10.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4580800 4580823 . + . mRNA SPAC12B10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12B10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4580824 4582145 . + . mRNA SPAC12B10.04 ; db_xref "SPD:23/23A05" ; systematic_id "SPAC12B10.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR094W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0004835; tubulin-tyrosine ligase activity
GO:0018166; C-terminal protein-tyrosinylation
GO:0000226; microtubule cytoskeleton organization" ; gene "SPAC12B10.04" ; product "tubulin-tyrosine ligase (predicted)" ;
chromosome1 GeneDB CDS 4580824 4581783 . + . mRNA SPAC12B10.04 ; colour "7" ;
chromosome1 GeneDB CDS 4581836 4581919 . + . mRNA SPAC12B10.04 ; colour "7" ;
chromosome1 GeneDB CDS 4581978 4582145 . + . mRNA SPAC12B10.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 4581784 4581789 . + . misc_feature unknown_3759 ; colour "6" ; note "gtatct, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4581823 4581835 . + . misc_feature unknown_3760 ; colour "6" ; note "ctaacaactttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4581920 4581925 . + . misc_feature unknown_3761 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4581966 4581977 . + . misc_feature unknown_3762 ; colour "6" ; note "ttaacttaacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4582146 4582176 . + . mRNA SPAC12B10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12B10.04" ; systematic_id "SPAC12B10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4582378 4584333 . + . mRNA SPAC12B10.05 ; systematic_id "SPAC12B10.05" ; colour "7" ; note "in S. cerevisiae removes 3 amino acids from the N- terminus of Nfs1 after cleavage by MPP" ; db_xref "SPD:37/37B03" ; Alias "icp55" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Nfs1; qualifier=predicted; date=20090903" ; GO "GO:0005739; mitochondrion
GO:0070006; metalloaminopeptidase activity
GO:0034982; mitochondrial protein processing
GO:0051605; protein maturation by peptide bond cleavage
GO:0007005; mitochondrion organization" ; primary_name "icp55" ; product "mitochondrial intermediate cleavage peptidase Icp55 (predicted)" ;
chromosome1 GeneDB CDS 4582378 4582549 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB CDS 4582595 4582697 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB CDS 4582747 4582767 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB CDS 4582807 4582833 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB CDS 4582869 4582882 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB CDS 4582931 4582963 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB CDS 4583007 4583134 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB CDS 4583174 4583557 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB CDS 4583619 4583696 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB CDS 4583740 4583961 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB CDS 4584011 4584118 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB CDS 4584163 4584333 . + . mRNA SPAC12B10.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 4582550 4582555 . + . misc_feature unknown_3763 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB intron 4582550 4582594 . + . intron SPAC12B10.05 ; db_xref "SPD:37/37B03" ; systematic_id "SPAC12B10.05" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4582581 4582594 . + . misc_feature unknown_3764 ; colour "6" ; note "ctaattaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4582698 4582703 . + . misc_feature unknown_3765 ; colour "6" ; note "gtaaac, splice donor sequence" ;
chromosome1 GeneDB intron 4582698 4582746 . + . intron SPAC12B10.05 ; db_xref "SPD:37/37B03" ; systematic_id "SPAC12B10.05" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4582729 4582746 . + . misc_feature unknown_3766 ; colour "6" ; note "ctaaccgagtatctacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4582768 4582773 . + . misc_feature unknown_3767 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4582793 4582806 . + . misc_feature unknown_3768 ; colour "6" ; note "ttaacaatttgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4582834 4582839 . + . misc_feature unknown_3769 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4582857 4582868 . + . misc_feature unknown_3770 ; colour "6" ; note "ctaacgttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4582883 4582888 . + . misc_feature unknown_3771 ; colour "6" ; note "gtaatc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4582915 4582930 . + . misc_feature unknown_3772 ; colour "6" ; note "ttaactttgaataaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4582964 4582969 . + . misc_feature unknown_3773 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4582964 4583006 . + . intron SPAC12B10.05 ; db_xref "SPD:37/37B03" ; systematic_id "SPAC12B10.05" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4582992 4583006 . + . misc_feature unknown_3774 ; colour "6" ; note "ttaacaatttccaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4583135 4583140 . + . misc_feature unknown_3775 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4583163 4583173 . + . misc_feature unknown_3776 ; colour "6" ; note "ttaattattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4583558 4583563 . + . misc_feature unknown_3777 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4583607 4583618 . + . misc_feature unknown_3778 ; colour "6" ; note "ttaacaaagaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4583697 4583702 . + . misc_feature unknown_3779 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4583722 4583739 . + . misc_feature unknown_3780 ; colour "6" ; note "ttaacacttgcttaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4583962 4583967 . + . misc_feature unknown_3781 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4583992 4584010 . + . misc_feature unknown_3782 ; colour "6" ; note "ctaacttccttggctatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4584119 4584124 . + . misc_feature unknown_3783 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4584148 4584162 . + . misc_feature unknown_3784 ; colour "6" ; note "ctaaacggggtttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4584334 4584375 . + . mRNA SPAC12B10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12B10.05" ; systematic_id "SPAC12B10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4584536 4584549 . - . mRNA SPAC12B10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12B10.06c" ; systematic_id "SPAC12B10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4584550 4585025 . - . mRNA SPAC12B10.06c ; db_xref "SPD:04/04D05" ; systematic_id "SPAC12B10.06c" ; GO "GO:0005749; mitochondrial respiratory chain complex II
GO:0008177; succinate dehydrogenase (ubiquinone) activity
GO:0045333; cellular respiration
GO:0006121; mitochondrial electorn transport, succinate to ubiquinone
GO:0006099; tricarboxylic acid cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=disease associated, paraganglioma; date=20090905 ||| term=disease associated, pheochromocytoma; date=20091120 ||| term=human SDH5 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; gene "SPAC12B10.06c" ; product "succinate dehydrogenase subunit Emi5 (predicted)" ;
chromosome1 GeneDB CDS 4584550 4584676 . - . mRNA SPAC12B10.06c ; colour "7" ;
chromosome1 GeneDB CDS 4584733 4585025 . - . mRNA SPAC12B10.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 4584677 4584694 . - . misc_feature unknown_3785 ; colour "6" ; note "ttaacgtccaatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4584727 4584732 . - . misc_feature unknown_3786 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4585024 4585199 . - . mRNA SPAC12B10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12B10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4585255 4586135 . + . mRNA SPAC12B10.07 ; systematic_id "SPAC12B10.07" ; colour "2" ; gene "acp1 ||| SPAC12B10.07" ; Alias "acp1" ; db_xref "SPD:41/41G03" ; GO "GO:0008290; F-actin capping protein complex
GO:0051016; barbed-end actin filament capping
GO:0051015; actin filament binding
GO:0008360; regulation of cell shape
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0030835; negative regulation of actin filament depolymerization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030479; actin cortical patch
GO:0005884; actin filament
GO:0051286; cell tip
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL007W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15743909; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "acp1" ; product "F-actin capping protein alpha subunit" ;
chromosome1 GeneDB CDS 4585255 4585324 . + . mRNA SPAC12B10.07 ; colour "2" ;
chromosome1 GeneDB CDS 4585371 4585564 . + . mRNA SPAC12B10.07 ; colour "2" ;
chromosome1 GeneDB CDS 4585629 4586135 . + . mRNA SPAC12B10.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 4585325 4585330 . + . misc_feature unknown_3787 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4585355 4585370 . + . misc_feature unknown_3788 ; colour "6" ; note "ctaatgcatataatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4585565 4585570 . + . misc_feature unknown_3789 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4585613 4585628 . + . misc_feature unknown_3790 ; colour "6" ; note "ctaacagtattcatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4586136 4586351 . + . mRNA SPAC12B10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12B10.07" ; systematic_id "SPAC12B10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4586584 4588058 . - . mRNA SPAC12B10.08c ; db_xref "SPD:50/50G03" ; systematic_id "SPAC12B10.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0005524; ATP binding
GO:0032267; tRNA(Ile)-lysidine synthase
GO:0006400; tRNA modification
GO:0032543; mitochondrial translation" ; gene "SPAC12B10.08c" ; product "mitochondrial tRNA(Ile)-lysidine synthetase family (predicted)" ;
chromosome1 GeneDB CDS 4586584 4587390 . - . mRNA SPAC12B10.08c ; colour "7" ;
chromosome1 GeneDB CDS 4587450 4587937 . - . mRNA SPAC12B10.08c ; colour "7" ;
chromosome1 GeneDB CDS 4587983 4588058 . - . mRNA SPAC12B10.08c ; colour "7" ;
chromosome1 GeneDB misc_feature 4587391 4587408 . - . misc_feature unknown_3791 ; colour "6" ; note "ctaacctatgaattgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4587444 4587449 . - . misc_feature unknown_3792 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4587938 4587949 . - . misc_feature unknown_3793 ; colour "6" ; note "ctaataagttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4587977 4587982 . - . misc_feature unknown_3794 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 4588250 4589574 . + . mRNA SPAC12B10.09 ; db_xref "SPD:50/50E12" ; systematic_id "SPAC12B10.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YNL003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000095; S-adenosylmethionine transporter activity
GO:0015805; S-adenosylmethionine transport
GO:0005743; mitochondrial inner membrane" ; gene "SPAC12B10.09" ; product "S-adenosylmethionine transporter (predicted)" ;
chromosome1 GeneDB CDS 4588250 4588510 . + . mRNA SPAC12B10.09 ; colour "7" ;
chromosome1 GeneDB CDS 4588567 4588723 . + . mRNA SPAC12B10.09 ; colour "7" ;
chromosome1 GeneDB CDS 4588869 4589323 . + . mRNA SPAC12B10.09 ; colour "7" ;
chromosome1 GeneDB CDS 4589410 4589574 . + . mRNA SPAC12B10.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 4588511 4588516 . + . misc_feature unknown_3795 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4588549 4588566 . + . misc_feature unknown_3796 ; colour "6" ; note "ctaatcaaaaatttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4588724 4588729 . + . misc_feature unknown_3797 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4588856 4588868 . + . misc_feature unknown_3798 ; colour "6" ; note "ctaacgctactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4589324 4589329 . + . misc_feature unknown_3799 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4589397 4589409 . + . misc_feature unknown_3800 ; colour "6" ; note "ctaatttgtttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4589575 4589707 . + . mRNA SPAC12B10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12B10.09" ; systematic_id "SPAC12B10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4590152 4590264 . + . mRNA SPAC12B10.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12B10.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4590265 4591524 . + . mRNA SPAC12B10.10 ; db_xref "SPD:50/50E08" ; systematic_id "SPAC12B10.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC12B10.10" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4590265 4591524 . + . mRNA SPAC12B10.10 ; colour "8" ;
chromosome1 GeneDB CDS_parts 4591855 4593567 . + . mRNA SPAC12B10.11 ; systematic_id "SPAC12B10.11" ; colour "2" ; gene "exg2 ||| SPAC12B10.11" ; Alias "exg2" ; db_xref "SPD:49/49B07" ; GO "GO:0004338; glucan 1,3-beta-glucosidase activity
GO:0046557; glucan endo-1,6-beta-glucosidase activity
GO:0016021; integral to membrane
GO:0008360; regulation of cell shape
GO:0008422; beta glucosidase activity
GO:0070880; fungal-type cell wall beta-glucan biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR190W and YLR300W and YDR261C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "exg2" ; product "glucan glucosidase Exg2, unknown specificity" ; EC_number "3.2.1.58" ;
chromosome1 GeneDB CDS 4591855 4593567 . + . mRNA SPAC12B10.11 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4593781 4593872 . - . mRNA SPAC12B10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12B10.12c" ; systematic_id "SPAC12B10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4593873 4595789 . - . mRNA SPAC12B10.12c ; systematic_id "SPAC12B10.12c" ; colour "2" ; gene "rhp41 ||| rhp4a ||| SPAC12B10.12c" ; Alias "rhp41" ; db_xref "SPD:49/49C12" ; synonym "rhp4a" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=human XPC ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YER162C and YDR314C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006289; nucleotide-excision repair
GO:0006298; mismatch repair
GO:0000109; nucleotide-excision repair complex" ; primary_name "rhp41" ; product "DNA repair protein Rhp41" ;
chromosome1 GeneDB CDS 4593873 4595789 . - . mRNA SPAC12B10.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4595788 4596086 . - . mRNA SPAC12B10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12B10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4596364 4596438 . + . mRNA SPAC12B10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12B10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4596439 4597269 . + . mRNA SPAC12B10.13 ; db_xref "SPD:41/41F08" ; systematic_id "SPAC12B10.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR135C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0045721; negative regulation of gluconeogenesis
GO:0043161; proteasomal ubiquitin dependent catabolic process
GO:0034657; GID complex" ; gene "SPAC12B10.13" ; product "proteasome-dependent catabolite inactivation protein, ubiquitin ligase complex subunit (predicted)" ;
chromosome1 GeneDB CDS 4596439 4596539 . + . mRNA SPAC12B10.13 ; colour "7" ;
chromosome1 GeneDB CDS 4596604 4596799 . + . mRNA SPAC12B10.13 ; colour "7" ;
chromosome1 GeneDB CDS 4596844 4597269 . + . mRNA SPAC12B10.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 4596540 4596545 . + . misc_feature unknown_3801 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4596585 4596603 . + . misc_feature unknown_3802 ; colour "6" ; note "ctaatcattgcttgtacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4596800 4596805 . + . misc_feature unknown_3803 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4596829 4596843 . + . misc_feature unknown_3804 ; colour "6" ; note "ttaacagctacatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4597270 4597380 . + . mRNA SPAC12B10.13 ; ID "SPAC12B10.13" ; db_xref "SPD:41/41F08" ; systematic_id "SPAC12B10.13" ; gene "SPAC12B10.13" ; note "mRNA from spc01576" ;
chromosome1 GeneDB 3'-UTR 4597466 4597566 . - . mRNA SPAC12B10.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12B10.14c" ; systematic_id "SPAC12B10.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4597567 4599622 . - . mRNA SPAC12B10.14c ; systematic_id "SPAC12B10.14c" ; colour "2" ; gene "ppk2 ||| SPAC12B10.14c" ; Alias "ppk2" ; db_xref "EMBL:BK005597 ||| SPD:49/49D04" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YHL007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk2" ; product "serine/threonine protein kinase Ppk2 (predicted)" ;
chromosome1 GeneDB CDS 4597567 4597621 . - . mRNA SPAC12B10.14c ; colour "2" ;
chromosome1 GeneDB CDS 4597680 4599622 . - . mRNA SPAC12B10.14c ; colour "2" ;
chromosome1 GeneDB CDS_parts 4600263 4600706 . - . mRNA SPAC12B10.15c ; systematic_id "SPAC12B10.15c" ; colour "7" ; gene "SPAC12B10.15c" ; note "S. cerevisiae orthology prediction pers. comm Charly Chahwan" ; db_xref "SPD:41/41B11" ; GO "GO:0004523; ribonuclease H activity
GO:0004523; ribonuclease H activity
GO:0043137; DNA replication, removal of RNA primer
GO:0032299; ribonuclease H2 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR154C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "ribonuclease H2 complex subunit (predicted)" ;
chromosome1 GeneDB CDS 4600263 4600706 . - . mRNA SPAC12B10.15c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4600705 4600817 . - . mRNA SPAC12B10.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12B10.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4601425 4601526 . - . mRNA SPAC12B10.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC12B10.16c" ; systematic_id "SPAC12B10.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4601527 4603221 . - . mRNA SPAC12B10.16c ; systematic_id "SPAC12B10.16c" ; colour "10" ; gene "SPAC12B10.16c ||| mug157" ; db_xref "SPD:49/49B01" ; Alias "mug157" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "mug157" ; product "conserved protein Mug157" ;
chromosome1 GeneDB CDS 4601527 4602981 . - . mRNA SPAC12B10.16c ; colour "10" ;
chromosome1 GeneDB CDS 4603147 4603221 . - . mRNA SPAC12B10.16c ; colour "10" ;
chromosome1 GeneDB misc_feature 4602982 4602996 . - . misc_feature unknown_3805 ; colour "6" ; note "ctaacaattatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4603141 4603146 . - . misc_feature unknown_3806 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4603220 4603346 . - . mRNA SPAC12B10.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC12B10.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4603222 4607631 . - . misc_feature unknown_3807 ; note "low complexity region; GC strand switch; gene free region" ;
chromosome1 GeneDB misc_feature 4604746 4606026 . + . misc_feature unknown_3808 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG880 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_feature 4606256 4607399 . + . misc_feature unknown_3809 ; db_xref "PMID:18488015" ; controlled_curation "term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008 ||| term=warning, no detectable long open reading frame; date=20071008" ; note "SPNG882 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 4606321 4607631 . + . mRNA SPAC1093.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1093.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4607632 4611417 . + . mRNA SPAC1093.01 ; systematic_id "SPAC1093.01" ; colour "10" ; gene "SPAC12B10.18 ||| SPAC1093.01" ; Alias "SPAC12B10.18" ; db_xref "SPD:49/49G11" ; synonym "SPAC12B10.18" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PPR domains; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "SPAC12B10.18" ; product "PPR repeat protein" ;
chromosome1 GeneDB CDS 4607632 4611417 . + . mRNA SPAC1093.01 ; colour "10" ;
chromosome1 GeneDB misc_feature 4609261 4609369 . + . misc_feature unknown_3810 ; note "nominal overlap with cosmid SPAC12B10 and cosmid SPAC1093" ;
chromosome1 GeneDB 3'-UTR 4611418 4611543 . + . mRNA SPAC1093.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1093.01" ; systematic_id "SPAC1093.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4612095 4612130 . + . mRNA SPAC1093.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1093.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4612131 4612826 . + . mRNA SPAC1093.02 ; db_xref "SPD:08/08B05" ; systematic_id "SPAC1093.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004733; pyridoxamine-phosphate oxidase activity
GO:0042818; pyridoxamine metabolic process" ; gene "SPAC1093.02" ; product "pyridoxamine 5'-phosphate oxidase (predicted)" ; EC_number "1.4.3.5" ;
chromosome1 GeneDB CDS 4612131 4612826 . + . mRNA SPAC1093.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4612827 4613031 . + . mRNA SPAC1093.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1093.02" ; systematic_id "SPAC1093.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4613627 4616331 . + . mRNA SPAC1093.03 ; systematic_id "SPAC1093.03" ; colour "7" ; gene "SPAC1093.03" ; note "GAG acceptor" ; db_xref "SPD:47/47B03" ; GO "GO:0019898; extrinsic to membrane
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0017120; polyphosphoinositide phosphatase activity
GO:0000753; cellular morphogenesis during conjugation with cellular fusion
GO:0030384; phosphoinositide metabolism
GO:0048015; phosphoinositide-mediated signaling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL325C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; date=20080502" ; product "inositol polyphosphate phosphatase (predicted)" ;
chromosome1 GeneDB CDS 4613627 4613686 . + . mRNA SPAC1093.03 ; colour "7" ;
chromosome1 GeneDB CDS 4613723 4614081 . + . mRNA SPAC1093.03 ; colour "7" ;
chromosome1 GeneDB CDS 4614164 4614378 . + . mRNA SPAC1093.03 ; colour "7" ;
chromosome1 GeneDB CDS 4614438 4614954 . + . mRNA SPAC1093.03 ; colour "7" ;
chromosome1 GeneDB CDS 4614996 4616331 . + . mRNA SPAC1093.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4616332 4617099 . + . mRNA SPAC1093.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1093.03" ; systematic_id "SPAC1093.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4616462 4618140 . - . mRNA SPAC1093.04c ; db_xref "SPD:45/45G10" ; systematic_id "SPAC1093.04c" ; colour "7" ; GO "GO:0004810; tRNA adenylyltransferase activity
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER168C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20100309 ||| term=warning, multiple translational start sites possible; cv=warning; date=20100309" ; gene "SPAC1093.04c" ; product "tRNA nucleotidyltransferase (predicted)" ; EC_number "2.7.7.25" ;
chromosome1 GeneDB CDS 4616462 4616623 . - . mRNA SPAC1093.04c ; colour "7" ;
chromosome1 GeneDB CDS 4616668 4617281 . - . mRNA SPAC1093.04c ; colour "7" ;
chromosome1 GeneDB CDS 4617353 4617935 . - . mRNA SPAC1093.04c ; colour "7" ;
chromosome1 GeneDB CDS 4617997 4618140 . - . mRNA SPAC1093.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 4616624 4616652 . - . misc_feature unknown_3811 ; colour "6" ; note "ttgatagtagtgtactcacacatatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4616662 4616667 . - . misc_feature unknown_3812 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4617282 4617292 . - . misc_feature unknown_3813 ; colour "6" ; note "ctgattattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4617347 4617352 . - . misc_feature unknown_3814 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4617991 4617996 . - . misc_feature unknown_3815 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4618139 4618421 . - . mRNA SPAC1093.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1093.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 4619245 4619544 . + . LTR unknown_3816 ; note "TF1 LTR" ;
chromosome1 GeneDB 5'-UTR 4619684 4619692 . + . mRNA SPAC1093.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1093.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4619693 4621900 . + . mRNA SPAC1093.05 ; db_xref "SPD:46/46F09" ; systematic_id "SPAC1093.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YJL033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human DDX10 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; GO "GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus
GO:0004004; ATP-dependent RNA helicase activity" ; gene "SPAC1093.05" ; product "ATP-dependent RNA helicase Hca4 (predicted)" ;
chromosome1 GeneDB CDS 4619693 4621900 . + . mRNA SPAC1093.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4621901 4622156 . + . mRNA SPAC1093.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1093.05" ; systematic_id "SPAC1093.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4622166 4634756 . - . mRNA SPAC1093.06c ; systematic_id "SPAC1093.06c" ; colour "2" ; gene "dhc1 ||| SPAC1093.06c ||| SPAC30C2.01c" ; Alias "dhc1" ; db_xref "SPD:50/50A02" ; synonym "SPAC30C2.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR054C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=AAA family ATPase; date=20081222" ; GO "GO:0030981; cortical microtubule cytoskeleton
GO:0005868; cytoplasmic dynein complex
GO:0005881; cytoplasmic microtubule
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0008569; minus-end-directed microtubule motor activity
GO:0030989; horsetail nuclear movement
GO:0007131; meiotic recombination
GO:0000743; nuclear migration during conjugation with cellular fusion
GO:0032871; regulation of karyogamy
GO:0030437; sporulation (sensu Fungi)
GO:0007129; synapsis
GO:0030989; horsetail nuclear movement
GO:0031134; sister chromatid biorientation" ; primary_name "dhc1" ; product "dynein heavy chain Dhc1" ;
chromosome1 GeneDB CDS 4622166 4634756 . - . mRNA SPAC1093.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 4627736 4627836 . + . misc_feature unknown_3817 ; note "nominal overlap with SPAC1093 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 4634755 4635415 . - . mRNA SPAC1093.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1093.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4635526 4635746 . + . mRNA SPAC30C2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30C2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4635747 4636703 . + . mRNA SPAC30C2.02 ; systematic_id "SPAC30C2.02" ; colour "2" ; gene "mmd1 ||| SPAC30C2.02" ; Alias "mmd1" ; db_xref "SPD:13/13E08" ; GO "GO:0005737; cytoplasm
GO:0019135; deoxyhypusine monooxygenase activity
GO:0008612; hypusine biosynthesis from peptidyl- lysine
GO:0007018; microtubule-based movement
GO:0048311; mitochondrion distribution" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14767070; date=20061127 ||| term=HEAT repeat; cv=protein_family; date=20061127 ||| term=name description, mitochondrial morphology and distribution; cv=name_description; date=20061127 ||| term=orthologous to S. cerevisiae YJR070C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=complementation, functionally complemented by S. cerevisiae YJR070C; db_xref=PMID:14767070; date=20100923" ; primary_name "mmd1" ; product "deoxyhypusine hydroxylase (predicted)" ;
chromosome1 GeneDB CDS 4635747 4636703 . + . mRNA SPAC30C2.02 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4636704 4636846 . + . mRNA SPAC30C2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30C2.02" ; systematic_id "SPAC30C2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4637119 4637269 . + . mRNA SPAC30C2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30C2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4637270 4637902 . + . mRNA SPAC30C2.03 ; db_xref "SPD:07/07C04" ; systematic_id "SPAC30C2.03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC30C2.03" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4637270 4637902 . + . mRNA SPAC30C2.03 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 4637903 4637943 . + . mRNA SPAC30C2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30C2.03" ; systematic_id "SPAC30C2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4638117 4639469 . + . mRNA SPAC30C2.04 ; db_xref "SPD:21/21A02" ; systematic_id "SPAC30C2.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL105W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0006418; tRNA aminoacylation for protein translation
GO:0005737; cytoplasm
GO:0017102; methionyl glutamyl tRNA synthetase complex
GO:0000049; tRNA binding" ; gene "SPAC30C2.04" ; product "cofactor for methionyl-and glutamyl-tRNA synthetases (predicted)" ;
chromosome1 GeneDB CDS 4638117 4639469 . + . mRNA SPAC30C2.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4639470 4639541 . + . mRNA SPAC30C2.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30C2.04" ; systematic_id "SPAC30C2.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4639884 4640477 . + . mRNA SPAC30C2.05 ; systematic_id "SPAC30C2.05" ; colour "7" ; gene "erv14 ||| SPAC30C2.05" ; Alias "erv14" ; db_xref "SPD:05/05H05" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle
GO:0005789; endoplasmic reticulum membrane
GO:0016971; flavin-linked sulfhydryl oxidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR210W and YGL054C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "erv14" ; product "cornichon family protein Erv14 (predicted)" ;
chromosome1 GeneDB CDS 4639884 4639924 . + . mRNA SPAC30C2.05 ; colour "7" ;
chromosome1 GeneDB CDS 4639969 4640020 . + . mRNA SPAC30C2.05 ; colour "7" ;
chromosome1 GeneDB CDS 4640076 4640365 . + . mRNA SPAC30C2.05 ; colour "7" ;
chromosome1 GeneDB CDS 4640447 4640477 . + . mRNA SPAC30C2.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 4640021 4640026 . + . misc_feature unknown_3818 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4640063 4640075 . + . misc_feature unknown_3819 ; colour "6" ; note "ttaattatttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4640366 4640371 . + . misc_feature unknown_3820 ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4640433 4640446 . + . misc_feature unknown_3821 ; colour "6" ; note "ctaacggataatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4640583 4640741 . - . mRNA SPAC30C2.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30C2.06c" ; systematic_id "SPAC30C2.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4640742 4642139 . - . mRNA SPAC30C2.06c ; systematic_id "SPAC30C2.06c" ; colour "7" ; gene "dml1 ||| SPAC30C2.06c" ; Alias "dml1" ; db_xref "SPD:44/44E02" ; GO "GO:0005737; cytoplasm
GO:0005741; mitochondrial outer membrane
GO:0005739; mitochondrion
GO:0005198; GTPase activity
GO:0000002; mitochondrial genome maintenance
GO:0000001; mitochondrion inheritance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR211W; date=19700101 ||| term=human Misato ortholog; date=20071123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "dml1" ; product "mitochondrial inheritance GTPase (predicted)" ;
chromosome1 GeneDB CDS 4640742 4642139 . - . mRNA SPAC30C2.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4642138 4642286 . - . mRNA SPAC30C2.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30C2.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4642345 4642494 . + . mRNA SPAC30C2.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30C2.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4642495 4645023 . + . mRNA SPAC30C2.07 ; db_xref "SPD:46/46H10" ; systematic_id "SPAC30C2.07" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC30C2.07" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4642495 4645023 . + . mRNA SPAC30C2.07 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 4645024 4645095 . + . mRNA SPAC30C2.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30C2.07" ; systematic_id "SPAC30C2.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4645479 4645559 . + . mRNA SPAC30C2.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC30C2.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4645560 4647171 . + . mRNA SPAC30C2.08 ; db_xref "SPD:45/45D02" ; systematic_id "SPAC30C2.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPl260W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC30C2.08" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 4645560 4645722 . + . mRNA SPAC30C2.08 ; colour "10" ;
chromosome1 GeneDB CDS 4645854 4646589 . + . mRNA SPAC30C2.08 ; colour "10" ;
chromosome1 GeneDB CDS 4646646 4646742 . + . mRNA SPAC30C2.08 ; colour "10" ;
chromosome1 GeneDB CDS 4646794 4647171 . + . mRNA SPAC30C2.08 ; colour "10" ;
chromosome1 GeneDB misc_feature 4645723 4645728 . + . misc_feature unknown_3822 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 4645723 4645853 . + . intron SPAC30C2.08 ; db_xref "SPD:45/45D02" ; systematic_id "SPAC30C2.08" ; gene "SPAC30C2.08" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4645834 4645853 . + . misc_feature unknown_3823 ; colour "6" ; note "ctaactaagtttcattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4646590 4646595 . + . misc_feature unknown_3824 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4646632 4646645 . + . misc_feature unknown_3825 ; note "ctaacggattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4646743 4646748 . + . misc_feature unknown_3826 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB intron 4646743 4646793 . + . intron SPAC30C2.08 ; db_xref "SPD:45/45D02" ; systematic_id "SPAC30C2.08" ; gene "SPAC30C2.08" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4646782 4646793 . + . misc_feature unknown_3827 ; colour "6" ; note "ttgatatgttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4647172 4647622 . + . mRNA SPAC30C2.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC30C2.08" ; systematic_id "SPAC30C2.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4647766 4647865 . + . misc_feature unknown_3828 ; note "nominal overlap with c1635 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 4647772 4647865 . + . misc_feature unknown_3829 ; note "nominal overlap with c30C2 S. pombe chromosome 1" ;
chromosome1 GeneDB repeat_region 4648124 4648145 . + . repeat_region unknown_3830 ; note "(tg)11" ;
chromosome1 GeneDB repeat_region 4648146 4648159 . + . repeat_region unknown_3831 ; note "(t)14" ;
chromosome1 GeneDB repeat_region 4648160 4648170 . + . repeat_region unknown_3832 ; note "(g)11" ;
chromosome1 GeneDB 5'-UTR 4649109 4649257 . + . mRNA SPAC1635.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1635.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4649258 4650106 . + . mRNA SPAC1635.01 ; db_xref "SPD:11/11B01" ; systematic_id "SPAC1635.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL055C and YIL114C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005741; mitochondrial outer membrane
GO:0008308; voltage-gated ion-selective channel activity
GO:0006820; anion transport
GO:0006811; ion transport
GO:0007005; mitochondrion organization and biogenesis" ; gene "SPAC1635.01" ; product "mitochondrial outer membrane voltage-dependent anion-selective channel (predicted)" ;
chromosome1 GeneDB CDS 4649258 4650106 . + . mRNA SPAC1635.01 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4650107 4650261 . + . mRNA SPAC1635.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1635.01" ; systematic_id "SPAC1635.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4650266 4650366 . + . misc_feature unknown_3833 ; note "nominal overlap with SPAC144 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 4650573 4650665 . - . mRNA SPAC144.01 ; ID "SPAC144.01" ; db_xref "SPD:03/03A04" ; systematic_id "SPAC144.01" ; gene "SPAC144.01" ; note "mRNA from AU008420" ;
chromosome1 GeneDB CDS_parts 4650666 4651062 . - . mRNA SPAC144.01 ; db_xref "SPD:03/03A04" ; systematic_id "SPAC144.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC144.01" ; product "sequence orphan" ; note "confirmed intron" ;
chromosome1 GeneDB CDS 4650666 4650764 . - . mRNA SPAC144.01 ; colour "8" ;
chromosome1 GeneDB CDS 4650823 4651062 . - . mRNA SPAC144.01 ; colour "8" ;
chromosome1 GeneDB misc_feature 4650765 4650782 . - . misc_feature unknown_3834 ; colour "6" ; note "ttaatcagtataacacag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4650765 4650822 . - . intron SPAC144.01 ; db_xref "SPD:03/03A04" ; systematic_id "SPAC144.01" ; gene "SPAC144.01" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4650817 4650822 . - . misc_feature unknown_3835 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4651061 4651091 . - . mRNA SPAC144.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4651351 4651792 . - . misc_RNA SPNCRNA.46 ; Alias "prl46" ; db_xref "EMBL:AB084858 ||| PMID:12597277" ; systematic_id "SPNCRNA.46" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl46" ; gene "prl46 ||| SPNCRNA.46" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome1 GeneDB 5'-UTR 4653068 4653092 . + . mRNA SPAC144.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4653093 4653842 . + . mRNA SPAC144.02 ; systematic_id "SPAC144.02" ; colour "2" ; gene "SPAC144.02 ||| fyy1 ||| iec1" ; Alias "iec1" ; db_xref "SPD:09/09B07" ; synonym "iec1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; primary_name "iec1" ; product "Ino80 complex subunit Iec1" ;
chromosome1 GeneDB CDS 4653093 4653842 . + . mRNA SPAC144.02 ; colour "2" ;
chromosome1 GeneDB intron 4653235 4653282 . + . intron SPAC144.02 ; db_xref "SPD:09/09B07" ; systematic_id "SPAC144.02" ; gene "SPAC144.02 ||| fyy1 ||| iec1" ;
chromosome1 GeneDB 3'-UTR 4653843 4654387 . + . mRNA SPAC144.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC144.02" ; systematic_id "SPAC144.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4654666 4654683 . + . mRNA SPAC144.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4654684 4656410 . + . mRNA SPAC144.03 ; systematic_id "SPAC144.03" ; colour "2" ; gene "ade2 ||| min10 ||| min3 ||| SPAC144.03" ; Alias "ade2" ; db_xref "SPD:35/35F09" ; synonym "min10 ||| min3" ; GO "GO:0004019; adenylosuccinate synthase activity
GO:0046086; adenosine biosynthesis
GO:0006164; purine nucleotide biosynthesis
GO:0005737; cytoplasm
GO:0042803; protein homodimerization activity
GO:0071276; cellular response to cadmium ion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL220W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ade2" ; product "adenylosuccinate synthetase Ade2" ; EC_number "6.3.4.4" ;
chromosome1 GeneDB CDS 4654684 4654727 . + . mRNA SPAC144.03 ; colour "2" ;
chromosome1 GeneDB CDS 4654767 4654863 . + . mRNA SPAC144.03 ; colour "2" ;
chromosome1 GeneDB CDS 4655247 4656410 . + . mRNA SPAC144.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 4654728 4654733 . + . misc_feature unknown_3836 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 4654728 4654766 . + . intron SPAC144.03 ; Alias "ade2" ; db_xref "SPD:35/35F09" ; systematic_id "SPAC144.03" ; primary_name "ade2" ; gene "ade2 ||| min10 ||| min3 ||| SPAC144.03" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4654864 4654869 . + . misc_feature unknown_3837 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 4654864 4655246 . + . intron SPAC144.03 ; Alias "ade2" ; db_xref "SPD:35/35F09" ; systematic_id "SPAC144.03" ; primary_name "ade2" ; gene "ade2 ||| min10 ||| min3 ||| SPAC144.03" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4655230 4655246 . + . misc_feature unknown_3838 ; colour "6" ; note "ctaacttttatttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4656411 4656456 . + . mRNA SPAC144.03 ; Alias "ade2" ; ID "SPAC144.03" ; db_xref "SPD:35/35F09" ; systematic_id "SPAC144.03" ; primary_name "ade2" ; gene "ade2 ||| min10 ||| min3 ||| SPAC144.03" ; note "mRNA from SPAB538" ;
chromosome1 GeneDB 3'-UTR 4656535 4656719 . - . mRNA SPAC144.04c ; Alias "spe1" ; ID "SPAC144.04c" ; db_xref "SPD:44/44B11" ; systematic_id "SPAC144.04c" ; primary_name "spe1" ; gene "spe1 ||| SPAC144.04c" ; note "mRNA from SPO243276" ;
chromosome1 GeneDB CDS_parts 4656720 4658018 . - . mRNA SPAC144.04c ; systematic_id "SPAC144.04c" ; colour "7" ; gene "spe1 ||| SPAC144.04c" ; Alias "spe1" ; db_xref "SPD:44/44B11" ; GO "GO:0004586; ornithine decarboxylase activity
GO:0005737; cytoplasm
GO:0015940; pantothenate biosynthesis
GO:0009446; putrescine biosynthesis
GO:0019467; ornithine catabolism, by decarboxylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL184W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spe1" ; product "ornithine decarboxylase Spe1 (predicted)" ; EC_number "4.1.1.17" ;
chromosome1 GeneDB CDS 4656720 4658018 . - . mRNA SPAC144.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4658019 4658322 . - . mRNA SPAC144.04c ; Alias "spe1" ; ID "SPAC144.04c" ; systematic_id "SPAC144.04c" ; primary_name "spe1" ; gene "spe1 ||| SPAC144.04c" ; note "mRNA from SPO243276" ;
chromosome1 GeneDB 5'-UTR 4659230 4659255 . + . mRNA SPAC144.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4659256 4663543 . + . mRNA SPAC144.05 ; db_xref "SPD:30/30G08" ; systematic_id "SPAC144.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR247C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0008094; DNA-dependent ATPase activity
GO:0006281; DNA repair
GO:0004842; ubiquitin-protein ligase activity
GO:0005634; nucleus
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0000790; nuclear chromatin" ; gene "SPAC144.05" ; product "ATP-dependent DNA helicase (predicted)" ;
chromosome1 GeneDB CDS 4659256 4662577 . + . mRNA SPAC144.05 ; colour "7" ;
chromosome1 GeneDB CDS 4662618 4662883 . + . mRNA SPAC144.05 ; colour "7" ;
chromosome1 GeneDB CDS 4662922 4663121 . + . mRNA SPAC144.05 ; colour "7" ;
chromosome1 GeneDB CDS 4663164 4663204 . + . mRNA SPAC144.05 ; colour "7" ;
chromosome1 GeneDB CDS 4663245 4663543 . + . mRNA SPAC144.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 4662578 4662583 . + . misc_feature unknown_3839 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4662606 4662617 . + . misc_feature unknown_3840 ; colour "6" ; note "ttaacttgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4662884 4662889 . + . misc_feature unknown_3841 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4662912 4662921 . + . misc_feature unknown_3842 ; colour "6" ; note "ctaactttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4663122 4663127 . + . misc_feature unknown_3843 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4663150 4663163 . + . misc_feature unknown_3844 ; colour "6" ; note "ctaatcttcattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4663205 4663210 . + . misc_feature unknown_3845 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4663232 4663244 . + . misc_feature unknown_3846 ; colour "6" ; note "ttaacattgacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4663544 4663739 . + . mRNA SPAC144.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC144.05" ; systematic_id "SPAC144.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4664351 4664386 . + . mRNA SPAC144.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4664387 4666982 . + . mRNA SPAC144.06 ; systematic_id "SPAC144.06" ; colour "7" ; gene "apl5 ||| SPAC144.06" ; Alias "apl5" ; db_xref "SPD:46/46H12" ; GO "GO:0006896; Golgi to vacuole transport
GO:0030123; AP-3 adaptor complex
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL195W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=adaptin family; date=20100902" ; primary_name "apl5" ; product "AP-3 adaptor complex subunit Apl5 (predicted)" ;
chromosome1 GeneDB CDS 4664387 4664545 . + . mRNA SPAC144.06 ; colour "7" ;
chromosome1 GeneDB CDS 4664586 4664747 . + . mRNA SPAC144.06 ; colour "7" ;
chromosome1 GeneDB CDS 4664799 4666982 . + . mRNA SPAC144.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 4664546 4664551 . + . misc_feature unknown_3847 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4664573 4664585 . + . misc_feature unknown_3848 ; colour "6" ; note "ctaacaaaagtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4664748 4664753 . + . misc_feature unknown_3849 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4664783 4664798 . + . misc_feature unknown_3850 ; colour "6" ; note "ctgacggttttattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4666983 4668366 . + . mRNA SPAC144.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC144.06" ; systematic_id "SPAC144.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4667264 4667393 . - . mRNA SPAC144.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC144.07c" ; systematic_id "SPAC144.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4667394 4668341 . - . mRNA SPAC144.07c ; db_xref "SPD:13/13C11" ; systematic_id "SPAC144.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR262W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "10" ; GO "GO:0005524; ATP binding
GO:0005737; cytoplasm
GO:0034087; establishment of mitotic sister chromatid cohesion" ; gene "SPAC144.07c" ; product "conserved ATP binding protein, implicated in sister chroamtid cohesion" ;
chromosome1 GeneDB CDS 4667394 4668341 . - . mRNA SPAC144.07c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4668340 4668748 . - . mRNA SPAC144.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4668874 4669551 . + . mRNA SPAC144.08 ; db_xref "SPD:07/07G12" ; systematic_id "SPAC144.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0030544; Hsp70 protein binding
GO:0016226; iron-sulfur cluster assembly" ; gene "SPAC144.08" ; product "mitochondrial DNAJ domain protein Jac1 (predicted)" ;
chromosome1 GeneDB CDS 4668874 4669551 . + . mRNA SPAC144.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4669845 4669887 . - . mRNA SPAC144.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC144.09c" ; systematic_id "SPAC144.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4669888 4671055 . - . mRNA SPAC144.09c ; systematic_id "SPAC144.09c" ; colour "2" ; gene "sfc2 ||| SPAC144.09c" ; Alias "sfc2" ; db_xref "SPD:18/18E04" ; GO "GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003709; RNA polymerase III transcription factor activity
GO:0005667; transcription factor complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; db_xref=PMID:12888341; date=19700101 ||| term=zf-C2H2 type; db_xref=PMID:12888341; date=19700101 ||| term=orthologous to S. cerevisiae YPR186C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sfc2" ; product "RNA polymerase III transcription factor TFIIIA" ;
chromosome1 GeneDB CDS 4669888 4670862 . - . mRNA SPAC144.09c ; colour "2" ;
chromosome1 GeneDB CDS 4670906 4671055 . - . mRNA SPAC144.09c ; colour "2" ;
chromosome1 GeneDB misc_feature 4670863 4670876 . - . misc_feature unknown_3851 ; colour "6" ; note "ctaacgttctttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4670863 4670905 . - . intron SPAC144.09c ; Alias "sfc2" ; db_xref "EMBL:AY091590 ||| SPD:18/18E04" ; systematic_id "SPAC144.09c" ; gene "sfc2 ||| SPAC144.09c" ; primary_name "sfc2" ; note "confirmed by mRNA AY091590" ;
chromosome1 GeneDB misc_feature 4670900 4670905 . - . misc_feature unknown_3852 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4671054 4671278 . - . mRNA SPAC144.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4671550 4671563 . - . mRNA SPAC144.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC144.10c" ; systematic_id "SPAC144.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4671564 4672943 . - . mRNA SPAC144.10c ; systematic_id "SPAC144.10c" ; colour "2" ; gene "gwt1 ||| SPAC144.10c ||| mug59" ; Alias "gwt1" ; db_xref "SPD:21/21D06" ; synonym "mug59" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0005789; endoplasmic reticulum membrane
GO:0032216; glucosaminyl-phosphotidylinositol O- acyltransferase activity
GO:0032216; glucosaminyl-phosphotidylinositol O- acyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL091C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=complementation, functionally complements human PIGW; db_xref=PMID:17072883; date=20101012 ||| term=human PIGW ortholog; db_xref=PMID:17072883; date=20101012" ; primary_name "gwt1" ; product "pig-W" ; EC_number "2.3.1.-" ;
chromosome1 GeneDB CDS 4671564 4672943 . - . mRNA SPAC144.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4672942 4673034 . - . mRNA SPAC144.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4674575 4674611 . + . mRNA SPAC144.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4674612 4675070 . + . mRNA SPAC144.11 ; systematic_id "SPAC144.11" ; colour "7" ; gene "rps1102 ||| rps11-2 ||| rps11 ||| SPAC144.11" ; Alias "rps1102" ; synonym "rps11-2 ||| rps11" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR025W and YBR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1102" ; product "40S ribosomal protein S11 (predicted)" ;
chromosome1 GeneDB CDS 4674612 4675070 . + . mRNA SPAC144.11 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4675071 4675126 . + . mRNA SPAC144.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC144.11" ; systematic_id "SPAC144.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4675839 4676623 . + . mRNA SPAC144.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4676624 4677448 . + . mRNA SPAC144.12 ; systematic_id "SPAC144.12" ; colour "7" ; gene "SPAC144.12" ; note "Pentose phosphate shunt enzymes are cytoplasmic (Bohringer Biochemical Pathways)" ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00710; ||| SPD:10/10F08" ; GO "GO:0009052; pentose-phosphate shunt, non-oxidative branch
GO:0004751; ribose-5-phosphate isomerase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "ribose 5-phosphate isomerase (predicted)" ; EC_number "5.3.1.6" ;
chromosome1 GeneDB CDS 4676624 4677448 . + . mRNA SPAC144.12 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4677569 4678385 . - . mRNA SPAC144.13c ; Alias "srw1" ; ID "SPAC144.13c" ; db_xref "SPD:33/33C11 ||| EMBL:AB005589" ; systematic_id "SPAC144.13c" ; primary_name "srw1" ; gene "srw1 ||| ste9 ||| SPAC144.13c" ;
chromosome1 GeneDB CDS_parts 4678386 4680056 . - . mRNA SPAC144.13c ; systematic_id "SPAC144.13c" ; colour "2" ; gene "srw1 ||| ste9 ||| SPAC144.13c" ; Alias "srw1" ; db_xref "SPD:33/33C11" ; synonym "ste9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL003C; date=19700101 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:10921876; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:10921876; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, sterile; db_xref=PMID:3185514; date=20101013 ||| term=name description, STErile; db_xref=PMID:3185514; date=20101013" ; GO "GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0007092; anaphase-promoting complex activation during mitotic cell cycle
GO:0008054; cyclin catabolism
GO:0045736; negative regulation of cyclin- dependent protein kinase activity
GO:0031137; regulation of conjugation with cellular fusion" ; primary_name "srw1" ; product "CDK inhibitor Srw1" ;
chromosome1 GeneDB CDS 4678386 4680056 . - . mRNA SPAC144.13c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4680055 4680182 . - . mRNA SPAC144.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4681284 4681625 . + . mRNA SPAC144.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4681614 4683275 . - . mRNA SPAC144.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC144.15c" ; systematic_id "SPAC144.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4681626 4683213 . + . mRNA SPAC144.14 ; systematic_id "SPAC144.14" ; colour "2" ; gene "klp8 ||| SPAC144.14" ; Alias "klp8" ; db_xref "SPD:45/45C05" ; GO "GO:0071341; medial cortical node
GO:0003777; microtubule motor activity
GO:0010970; microtubule-based transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201" ; primary_name "klp8" ; product "kinesin-like protein Klp8" ;
chromosome1 GeneDB CDS 4681626 4682276 . + . mRNA SPAC144.14 ; colour "2" ;
chromosome1 GeneDB CDS 4682329 4683213 . + . mRNA SPAC144.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 4682277 4682282 . + . misc_feature unknown_3853 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4682314 4682328 . + . misc_feature unknown_3854 ; colour "6" ; note "ttaactctggtttag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 4683276 4685381 . - . mRNA SPAC144.15c ; systematic_id "SPAC144.15c" ; colour "7" ; gene "SPAC144.15c ||| cog1" ; Alias "cog1" ; db_xref "SPD:37/37C12" ; GO "GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0000301; retrograde (vesicle recycling within Golgi) transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL223C; date=20070814 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cog1" ; product "Golgi transport complex subunit Cog1 (predicted)" ;
chromosome1 GeneDB CDS 4683276 4685381 . - . mRNA SPAC144.15c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4685380 4685626 . - . mRNA SPAC144.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4686513 4686561 . + . mRNA SPAC144.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4686562 4687101 . + . mRNA SPAC144.16 ; db_xref "SPD:05/05E03" ; systematic_id "SPAC144.16" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR122W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0034085; establishment of mitotic sister chromtid cohesion" ; gene "SPAC144.16" ; product "sister chromatid cohesion protein (predicted)" ;
chromosome1 GeneDB CDS 4686562 4687101 . + . mRNA SPAC144.16 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4687102 4687277 . + . mRNA SPAC144.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC144.16" ; systematic_id "SPAC144.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4687388 4688831 . - . mRNA SPAC144.17c ; db_xref "SPD:20/20H02" ; systematic_id "SPAC144.17c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0004331; fructose-2,6-bisphosphate 2- phosphatase activity
GO:0006003; fructose 2,6-bisphosphate metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR345W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20082502" ; gene "SPAC144.17c" ; product "6-phosphofructo-2-kinase (predicted)" ; EC_number "3.1.3.46" ;
chromosome1 GeneDB CDS 4687388 4687477 . - . mRNA SPAC144.17c ; colour "7" ;
chromosome1 GeneDB CDS 4687522 4688462 . - . mRNA SPAC144.17c ; colour "7" ;
chromosome1 GeneDB CDS 4688513 4688831 . - . mRNA SPAC144.17c ; colour "7" ;
chromosome1 GeneDB misc_feature 4688463 4688476 . - . misc_feature unknown_3855 ; colour "6" ; note "ctaacttataacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4688507 4688512 . - . misc_feature unknown_3856 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4690144 4690169 . + . mRNA SPAC144.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC144.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4690170 4691207 . + . mRNA SPAC144.18 ; systematic_id "SPAC144.18" ; colour "7" ; db_xref "SPD:15/15G03" ; Alias "vrg4" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER039C and YGL225W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SLC34D1 and SLC34D2 ortholog; date=20091106 ||| term=disease associated, Schneckenbecken dysplasia; date=20091106 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0005338; nucleotide-sugar transporter activity
GO:0015780; nucleotide-sugar transport
GO:0006487; protein amino acid N-linked glycosylation
GO:0005794; Golgi apparatus" ; primary_name "vrg4" ; product "Golgi GDP-mannose transporter Vrg4 (predicted)" ;
chromosome1 GeneDB CDS 4690170 4691207 . + . mRNA SPAC144.18 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4691208 4691628 . + . mRNA SPAC144.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC144.18" ; systematic_id "SPAC144.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4691262 4691366 . + . misc_feature unknown_3857 ; note "nominal overlap with cosmid SPAC1834 and cosmid SPAC144" ;
chromosome1 GeneDB 5'-UTR 4691803 4691926 . + . mRNA SPAC1834.01 ; Alias "sup45" ; ID "SPAC1834.01" ; systematic_id "SPAC1834.01" ; primary_name "sup45" ; gene "sup45 ||| SPAC1834.01" ; note "mRNA from spc05011 1 334" ;
chromosome1 GeneDB CDS_parts 4691927 4693228 . + . mRNA SPAC1834.01 ; systematic_id "SPAC1834.01" ; colour "2" ; gene "sup45 ||| SPAC1834.01" ; Alias "sup45" ; db_xref "SPD:32/32G12" ; GO "GO:0005829; cytosol
GO:0018444; translation release factor complex
GO:0016149; translation release factor activity, codon specific
GO:0006415; translational termination" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR143C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "sup45" ; product "translation release factor eRF1" ;
chromosome1 GeneDB CDS 4691927 4693228 . + . mRNA SPAC1834.01 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4693229 4693384 . + . mRNA SPAC1834.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1834.01" ; systematic_id "SPAC1834.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4693771 4698492 . + . mRNA SPAC1834.02 ; systematic_id "SPAC1834.02" ; colour "7" ; gene "aro1 ||| SPAC1834.02" ; Alias "aro1" ; db_xref "SPD:31/31A02" ; GO "GO:0009073; aromatic amino acid family biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR127W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "aro1" ; product "pentafunctional aromatic polypeptide Aro1 (predicted)" ; EC_number "4.2.3.4 ||| 2.5.1.19 ||| 2.7.1.71 ||| 4.2.1.10 ||| 1.1.1.25" ;
chromosome1 GeneDB CDS 4693771 4698492 . + . mRNA SPAC1834.02 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4698493 4698559 . + . mRNA SPAC1834.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1834.02" ; systematic_id "SPAC1834.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4698773 4699084 . - . mRNA SPAC1834.03c ; Alias "hhf1" ; ID "SPAC1834.03c" ; db_xref "SPD:01/01F02" ; systematic_id "SPAC1834.03c" ; primary_name "hhf1" ; gene "hhf1 ||| h4.1 ||| SPAC1834.03c" ; note "mRNA from spc00366 118 51" ;
chromosome1 GeneDB CDS_parts 4699085 4699396 . - . mRNA SPAC1834.03c ; systematic_id "SPAC1834.03c" ; colour "2" ; gene "hhf1 ||| h4.1 ||| SPAC1834.03c" ; Alias "hhf1" ; db_xref "SPD:01/01F02" ; synonym "h4.1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR009C and YNL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K20; cv=pt_mod; date=20100311" ; GO "GO:0003677; DNA binding
GO:0006333; chromatin assembly or disassembly
GO:0000788; nuclear nucleosome" ; primary_name "hhf1" ; product "histone H4 h4.1" ;
chromosome1 GeneDB CDS 4699085 4699396 . - . mRNA SPAC1834.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4699397 4699544 . - . mRNA SPAC1834.03c ; Alias "hhf1" ; ID "SPAC1834.03c" ; systematic_id "SPAC1834.03c" ; primary_name "hhf1" ; gene "hhf1 ||| h4.1 ||| SPAC1834.03c" ; note "mRNA from spc00519 117 1" ;
chromosome1 GeneDB 5'-UTR 4699763 4699828 . + . mRNA SPAC1834.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1834.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4699829 4700239 . + . mRNA SPAC1834.04 ; systematic_id "SPAC1834.04" ; colour "2" ; gene "hht1 ||| SPAC1834.04" ; Alias "hht1" ; db_xref "SPD:03/03B12" ; GO "GO:0000788; nuclear nucleosome
GO:0003677; DNA binding
GO:0006333; chromatin assembly or disassembly
GO:0030702; chromatin silencing at centromere
GO:0030702; chromatin silencing at centromere
GO:0030702; chromatin silencing at centromere
GO:0032015; regulation of Ran protein signal transduction
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR010W and YNL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; residue=S10; cv=pt_mod; date=20090213 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K4|K9; cv=pt_mod; date=20100311 ||| term=target of Hrk1; qualifier=phosphorylated_by; db_xref=PMID:20929775; date=20101115" ; primary_name "hht1" ; product "histone H3 h3.1" ;
chromosome1 GeneDB CDS 4699829 4700239 . + . mRNA SPAC1834.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4700240 4700560 . + . mRNA SPAC1834.04 ; Alias "hht1" ; ID "SPAC1834.04" ; db_xref "SPD:03/03B12" ; systematic_id "SPAC1834.04" ; primary_name "hht1" ; gene "hht1 ||| SPAC1834.04" ; note "mRNA from spc03596 1 150" ;
chromosome1 GeneDB 5'-UTR 4702291 4702587 . + . mRNA SPAC1834.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1834.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4702588 4704321 . + . mRNA SPAC1834.05 ; systematic_id "SPAC1834.05" ; colour "7" ; gene "alg9 ||| SPAC1834.05" ; Alias "alg9" ; db_xref "SPD:35/35G06" ; GO "GO:0006487; protein amino acid N-linked glycosylation
GO:0000030; mannosyltransferase activity
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL219C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, glycosylation disorders; date=20090428" ; primary_name "alg9" ; product "mannosyltransferase complex subunit Alg9 (predicted)" ;
chromosome1 GeneDB CDS 4702588 4704321 . + . mRNA SPAC1834.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4704322 4704657 . + . mRNA SPAC1834.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1834.05" ; systematic_id "SPAC1834.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4704547 4704789 . - . mRNA SPAC1834.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1834.06c" ; systematic_id "SPAC1834.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4704790 4705919 . - . mRNA SPAC1834.06c ; systematic_id "SPAC1834.06c" ; colour "2" ; gene "pmo25 ||| SPAC1834.06c" ; Alias "pmo25" ; db_xref "SPD:17/17G05" ; GO "GO:0032153; cell division site
GO:0005826; contractile ring
GO:0005737; cytoplasm
GO:0031097; medial ring
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0051666; actin cortical patch localization
GO:0030037; actin filament reorganization during cell cycle
GO:0000078; cell morphogenesis checkpoint
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0010590; regulation of cell separation during cytokinesis
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO: SF 3077846; regulation of establishment or maintenance of cell polarity resulting in resulting in cell shape
GO:0045859; regulation of protein kinase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16096637; date=19700101 ||| term=orthologous to S. cerevisiae YKL189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CAB9 and CAB39-L ortholog; date=20101009" ; primary_name "pmo25" ; product "mo25 family protein Pmo25" ;
chromosome1 GeneDB CDS 4704790 4705224 . - . mRNA SPAC1834.06c ; colour "2" ;
chromosome1 GeneDB CDS 4705310 4705762 . - . mRNA SPAC1834.06c ; colour "2" ;
chromosome1 GeneDB CDS 4705818 4705919 . - . mRNA SPAC1834.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 4705225 4705238 . - . misc_feature unknown_3858 ; colour "6" ; note "ctaactttaatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4705304 4705309 . - . misc_feature unknown_3859 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4705763 4705775 . - . misc_feature unknown_3860 ; colour "6" ; note "ctaacgtaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4705812 4705817 . - . misc_feature unknown_3861 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4705918 4705921 . - . mRNA SPAC1834.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1834.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4706793 4706914 . + . mRNA SPAC1834.07 ; ID "SPAC1834.07" ; systematic_id "SPAC1834.07" ; note "mRNA from AF156966 8 240" ;
chromosome1 GeneDB CDS_parts 4706915 4708958 . + . mRNA SPAC1834.07 ; systematic_id "SPAC1834.07" ; colour "2" ; db_xref "SPD:46/46D06" ; Alias "klp3" ; synonym "krp1" ; GO "GO:0005875; microtubule associated complex
GO:0003777; microtubule motor activity
GO:0005515; protein binding
GO:0033205; cell cycle cytokinesis
GO:0007163; establishment or maintence of cell polarity
GO:0006886; intracellular protein transport
GO:0007018; microtubule-based movement
GO:0000301; retrograde transport, vesicle recycling within Golgi" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL079W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:12132578; date=20100705 ||| term=phenotype, cell morphology, branched; qualifier=overexpression; db_xref=PMID:12132578; date=20100705 ||| term=phenotype, septation defects; qualifier=overexpression; db_xref=PMID:12132578; date=20100705" ; primary_name "klp3" ; product "kinesin-like protein Klp3" ;
chromosome1 GeneDB CDS 4706915 4707025 . + . mRNA SPAC1834.07 ; colour "2" ;
chromosome1 GeneDB CDS 4707079 4707178 . + . mRNA SPAC1834.07 ; colour "2" ;
chromosome1 GeneDB CDS 4707387 4707460 . + . mRNA SPAC1834.07 ; colour "2" ;
chromosome1 GeneDB CDS 4707506 4707659 . + . mRNA SPAC1834.07 ; colour "2" ;
chromosome1 GeneDB CDS 4707733 4708958 . + . mRNA SPAC1834.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 4707026 4707031 . + . misc_feature unknown_3862 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB intron 4707026 4707078 . + . intron SPAC1834.07 ; db_xref "SPD:46/46D06" ; systematic_id "SPAC1834.07" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4707063 4707078 . + . misc_feature unknown_3863 ; colour "6" ; note "ctgacatgattaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4707179 4707184 . + . misc_feature unknown_3864 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 4707179 4707386 . + . intron SPAC1834.07 ; db_xref "SPD:46/46D06" ; systematic_id "SPAC1834.07" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4707373 4707386 . + . misc_feature unknown_3865 ; colour "6" ; note "ctaatatattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4707461 4707466 . + . misc_feature unknown_3866 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB intron 4707461 4707505 . + . intron SPAC1834.07 ; db_xref "SPD:46/46D06" ; systematic_id "SPAC1834.07" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4707492 4707505 . + . misc_feature unknown_3867 ; colour "6" ; note "ctaacaatctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4707660 4707665 . + . misc_feature unknown_3868 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB intron 4707660 4707732 . + . intron SPAC1834.07 ; db_xref "SPD:46/46D06" ; systematic_id "SPAC1834.07" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4707716 4707732 . + . misc_feature unknown_3869 ; colour "6" ; note "ttaaccatgatttacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4708959 4709252 . + . mRNA SPAC1834.07 ; ID "SPAC1834.07" ; db_xref "SPD:46/46D06" ; systematic_id "SPAC1834.07" ; note "mRNA from AF154055 560 2079" ;
chromosome1 GeneDB 5'-UTR 4709779 4709969 . + . mRNA SPAC1834.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1834.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4709970 4714989 . + . mRNA SPAC1834.08 ; systematic_id "SPAC1834.08" ; colour "2" ; gene "mak1 ||| phk3 ||| SPAC1834.08" ; Alias "mak1" ; db_xref "SPD:39/39E07" ; synonym "phk3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11758939; date=19700101 ||| term=target is Spy1; qualifier=indirect; db_xref=PMID:11758939; date=19700101 ||| term=PAC domain protein; date=19700101 ||| term=similar to S. pombe Mak2 and Mak3; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004673; protein histidine kinase activity
GO:0000155; two-component sensor activity
GO:0006468; protein amino acid phosphorylation
GO:0031137; regulation of conjugation with cellular fusion
GO:0007346; regulation of progression through mitotic cell cycle
GO:0031098; stress-activated protein kinase signaling pathway
GO:0000160; two-component signal transduction system (phosphorelay)" ; primary_name "mak1" ; product "histidine kinase Mak1" ;
chromosome1 GeneDB CDS 4709970 4710038 . + . mRNA SPAC1834.08 ; colour "2" ;
chromosome1 GeneDB CDS 4710139 4714989 . + . mRNA SPAC1834.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 4710039 4710044 . + . misc_feature unknown_3870 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4710123 4710138 . + . misc_feature unknown_3871 ; colour "6" ; note "ctaacgtttgaataag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4714990 4715113 . + . mRNA SPAC1834.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1834.08" ; systematic_id "SPAC1834.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 4715431 4715502 . + . tRNA SPATRNATHR.05 ; systematic_id "SPATRNATHR.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033445; AGT codon-amino acid adaptor activity" ; product "tRNA Threonine" ; note "tRNA Thr anticodon AGT, Cove score 75.01" ;
chromosome1 GeneDB misc_RNA 4715734 4716187 . + . misc_RNA SPNCRNA.252 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.252" ; synonym "SPNG898" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 4716570 4717490 . + . mRNA SPAC1834.09 ; systematic_id "SPAC1834.09" ; colour "10" ; gene "SPAC1834.09 ||| mug51" ; db_xref "SPD:43/43E12" ; Alias "mug51" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Vertebrates; date=20100513 ||| term=species distribution, conserved in Metazoa; date=20100513 ||| term=species distribution, conserved in Eukaryotes only; date=20100513" ; primary_name "mug51" ; product "variant protein kinase 19 family protein" ;
chromosome1 GeneDB CDS 4716570 4717490 . + . mRNA SPAC1834.09 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4717491 4717636 . + . mRNA SPAC1834.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1834.09" ; systematic_id "SPAC1834.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4717714 4718311 . - . mRNA SPAC1834.10c ; db_xref "SPD:06/06F02" ; systematic_id "SPAC1834.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1834.10c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4717714 4718027 . - . mRNA SPAC1834.10c ; colour "8" ;
chromosome1 GeneDB CDS 4718089 4718311 . - . mRNA SPAC1834.10c ; colour "8" ;
chromosome1 GeneDB misc_feature 4718028 4718039 . - . misc_feature unknown_3872 ; colour "6" ; note "ttaacatgttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4718083 4718088 . - . misc_feature unknown_3873 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4718310 4718408 . - . mRNA SPAC1834.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1834.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4718628 4718737 . - . mRNA SPAC1834.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1834.11c" ; systematic_id "SPAC1834.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4718738 4721116 . - . mRNA SPAC1834.11c ; systematic_id "SPAC1834.11c" ; colour "7" ; gene "sec18 ||| SPAC1834.11c" ; Alias "sec18" ; db_xref "SPD:28/28E07" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0016887; ATPase activity
GO:0042144; vacuole fusion, non-autophagic
GO:0005524; ATP binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YBR080C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sec18" ; product "secretory pathway protein Sec18 (predicted)" ;
chromosome1 GeneDB CDS 4718738 4721116 . - . mRNA SPAC1834.11c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4721115 4721488 . - . mRNA SPAC1834.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1834.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4722806 4723017 . + . mRNA SPAC17D4.01 ; Alias "pex7" ; ID "SPAC17D4.01" ; systematic_id "SPAC17D4.01" ; primary_name "pex7" ; gene "pex7 ||| SPAC1834.12 ||| SPAC17D4.01" ; note "mRNA from spc00168 381 139" ;
chromosome1 GeneDB CDS_parts 4723018 4724400 . + . mRNA SPAC17D4.01 ; systematic_id "SPAC17D4.01" ; colour "7" ; gene "pex7 ||| SPAC1834.12 ||| SPAC17D4.01" ; Alias "pex7" ; db_xref "SPD:32/32H11" ; obsolete_name "SPAP17D4.01" ; synonym "SPAC1834.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR142C; date=19700101 ||| term=disease associated, rhizomelic chondrodysplasia punctata (RCDP); date=19700101 ||| term=disease associated, peroxisomal defects; date=20080601 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005829; cytosol
GO:0005782; peroxisomal matrix
GO:0000268; peroxisome targeting sequence binding
GO:0006625; protein targeting to peroxisome" ; primary_name "pex7" ; product "peroxin-7 (predicted)" ;
chromosome1 GeneDB CDS 4723018 4723048 . + . mRNA SPAC17D4.01 ; colour "7" ;
chromosome1 GeneDB CDS 4723376 4723508 . + . mRNA SPAC17D4.01 ; colour "7" ;
chromosome1 GeneDB CDS 4723638 4724400 . + . mRNA SPAC17D4.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 4723049 4723054 . + . misc_feature unknown_3874 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB intron 4723049 4723375 . + . intron SPAC17D4.01 ; Alias "pex7" ; db_xref "SPD:32/32H11" ; systematic_id "SPAC17D4.01" ; primary_name "pex7" ; gene "pex7 ||| SPAC1834.12 ||| SPAC17D4.01" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4723264 4723416 . + . misc_feature unknown_3875 ; note "nominal overlap with SPAC1834 AL157734 S.pombe chromosome I cosmid c1834." ;
chromosome1 GeneDB misc_feature 4723359 4723375 . + . misc_feature unknown_3876 ; colour "6" ; note "ctaacaatattcgctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4723509 4723514 . + . misc_feature unknown_3877 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4723509 4723637 . + . intron SPAC17D4.01 ; Alias "pex7" ; db_xref "SPD:32/32H11" ; systematic_id "SPAC17D4.01" ; primary_name "pex7" ; gene "pex7 ||| SPAC1834.12 ||| SPAC17D4.01" ; note "intron confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4723621 4723637 . + . misc_feature unknown_3878 ; colour "6" ; note "ctaacgttaaatactag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4724401 4724645 . + . mRNA SPAC17D4.01 ; Alias "pex7" ; ID "SPAC17D4.01" ; db_xref "SPD:32/32H11" ; systematic_id "SPAC17D4.01" ; primary_name "pex7" ; gene "pex7 ||| SPAC1834.12 ||| SPAC17D4.01" ; note "mRNA from AU013449" ;
chromosome1 GeneDB 5'-UTR 4724786 4724802 . + . mRNA SPAC17D4.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17D4.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4724803 4726760 . + . mRNA SPAC17D4.02 ; systematic_id "SPAC17D4.02" ; colour "2" ; gene "cdc45 ||| sna41 ||| goa1 ||| SPAC17D4.02" ; Alias "cdc45" ; db_xref "SPD:39/39F03" ; synonym "sna41 ||| goa1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9619628; date=19700101 ||| term=orthologous to S. cerevisiae YLR103C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human CDC45L ortholog; date=20100630 ||| term=phenotype, cell morphology, elongated cells; allele=sna41-912; qualifier=ts; db_xref=PMID:9619628; date=20100705" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0043596; nuclear replication fork
GO:0000790; nuclear chromatin
GO:0006270; DNA replication initiation
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006271; DNA strand elongation during replication
GO:0071163; DNA replication preinitiation complex assembly
GO:0000790; nuclear chromatin" ; primary_name "cdc45" ; product "DNA replication pre-initiation complex subunit Cdc45" ;
chromosome1 GeneDB CDS 4724803 4726422 . + . mRNA SPAC17D4.02 ; colour "2" ;
chromosome1 GeneDB CDS 4726464 4726760 . + . mRNA SPAC17D4.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 4726423 4726428 . + . misc_feature unknown_3879 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4726423 4726463 . + . intron SPAC17D4.02 ; Alias "cdc45" ; db_xref "SPD:39/39F03" ; systematic_id "SPAC17D4.02" ; primary_name "cdc45" ; gene "cdc45 ||| sna41 ||| goa1 ||| SPAC17D4.02" ; note "confirmed by EST" ;
chromosome1 GeneDB misc_feature 4726451 4726463 . + . misc_feature unknown_3880 ; colour "6" ; note "ctaacacttgaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4726761 4726770 . + . mRNA SPAC17D4.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17D4.02" ; systematic_id "SPAC17D4.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4726782 4726859 . - . mRNA SPAC17D4.03c ; Alias "cis4" ; ID "SPAC17D4.03c" ; db_xref "SPD:33/33F11" ; systematic_id "SPAC17D4.03c" ; primary_name "cis4" ; gene "cis4 ||| SPAC17D4.03c" ; note "mRNA from AU009594" ;
chromosome1 GeneDB CDS_parts 4726860 4729058 . - . mRNA SPAC17D4.03c ; systematic_id "SPAC17D4.03c" ; colour "2" ; gene "cis4 ||| SPAC17D4.03c" ; Alias "cis4" ; db_xref "SPD:33/33F11" ; GO "GO:0000139; Golgi membrane
GO:0006829; zinc ion transport
GO:0005385; zinc ion transmembrane transporter activity
GO:0006882; cellular zinc ion homeostasis
GO:0005515; protein binding
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR205W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "cis4" ; product "cation diffusion family zinc membrane transporter Cis4" ;
chromosome1 GeneDB CDS 4726860 4729058 . - . mRNA SPAC17D4.03c ; colour "2" ;
chromosome1 GeneDB misc_feature 4727354 4727659 . - . misc_feature unknown_3881 ; note "halfwise predicts intron here, but has no consensus branch, and mRNA is unspliced, so omitted from prediction" ;
chromosome1 GeneDB 5'-UTR 4729057 4729300 . - . mRNA SPAC17D4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17D4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4729848 4729887 . + . mRNA SPAC17D4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC17D4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4729888 4731897 . + . mRNA SPAC17D4.04 ; systematic_id "SPAC17D4.04" ; colour "7" ; gene "SPAC17D4.04 ||| SPAC458.01" ; db_xref "SPD:33/33F04" ; synonym "SPAC458.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016428; tRNA (cytosine-5-)-methyltransferase activity
GO:0030488; tRNA methylation
GO:0005634; nucleus" ; product "tRNA (cytosine-5-)-methyltransferase (predicted)" ;
chromosome1 GeneDB CDS 4729888 4730042 . + . mRNA SPAC17D4.04 ; colour "7" ;
chromosome1 GeneDB CDS 4730088 4731897 . + . mRNA SPAC17D4.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 4730043 4730048 . + . misc_feature unknown_3882 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4730072 4730087 . + . misc_feature unknown_3883 ; colour "6" ; note "ctaatcattttaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4730956 4731119 . + . misc_feature unknown_3884 ; note "nominal overlap with SPAC458 AL358272 S.pombe chromosome I cosmid c458." ;
chromosome1 GeneDB 3'-UTR 4731898 4732053 . + . mRNA SPAC17D4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC17D4.04" ; systematic_id "SPAC17D4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4732068 4732191 . - . mRNA SPAC458.02c ; ID "SPAC458.02c" ; db_xref "SPD:26/26A02" ; systematic_id "SPAC458.02c" ; gene "SPAC458.02c" ; note "mRNA from AU006997" ;
chromosome1 GeneDB CDS_parts 4732192 4733815 . - . mRNA SPAC458.02c ; db_xref "SPD:26/26A02" ; systematic_id "SPAC458.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR198C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0030529; ribonucleoprotein complex
GO:0016071; mRNA metabolism" ; gene "SPAC458.02c" ; product "mRNP complex (predicted)" ;
chromosome1 GeneDB CDS 4732192 4733328 . - . mRNA SPAC458.02c ; colour "7" ;
chromosome1 GeneDB CDS 4733426 4733599 . - . mRNA SPAC458.02c ; colour "7" ;
chromosome1 GeneDB CDS 4733720 4733815 . - . mRNA SPAC458.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 4733329 4733343 . - . misc_feature unknown_3885 ; colour "6" ; note "ctgacatacttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4733420 4733425 . - . misc_feature unknown_3886 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4733600 4733611 . - . misc_feature unknown_3887 ; colour "6" ; note "ctaatcaactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4733714 4733719 . - . misc_feature unknown_3888 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4733814 4733868 . - . mRNA SPAC458.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC458.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4734854 4734861 . + . mRNA SPAC458.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC458.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4734862 4737468 . + . mRNA SPAC458.03 ; systematic_id "SPAC458.03" ; colour "2" ; gene "SPAC458.03 ||| tel2" ; Alias "tel2" ; db_xref "SPD:38/38F04" ; GO "GO:0031931; TORC 1 complex
GO:0031932; TORC 2 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0031929; TOR signaling pathway
GO:0009650; UV protection
GO:0001934; positive regulation of protein amino acid phosphorylation
GO:0033261; regulation of progression through S phase
GO:0043111; replication fork blocking
GO:0007004; telomere maintenance via telomerase
GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR099W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17189249; date=20071004 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tel2" ; product "Tel2/Rad-5/Clk-2 family protein Tel2" ;
chromosome1 GeneDB CDS 4734862 4737468 . + . mRNA SPAC458.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4737469 4737491 . + . mRNA SPAC458.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC458.03" ; systematic_id "SPAC458.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4737605 4738854 . - . mRNA SPAC458.04c ; systematic_id "SPAC458.04c" ; colour "2" ; db_xref "SPD:43/43G08" ; Alias "dil1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20071011 ||| term=name description, Dynein Intermediate light chain-Like; db_xref=PMID:20404563; cv=name_description; date=20100219 ||| term=warning, gene structure updated; db_xref=PMID:20404563; cv=warning; date=20100219 ||| term=orthologous to S. cerevisiae YMR299C; date=20100219 ||| term=species distribution, conserved in Fungi; date=20100219 ||| term=species distribution, conserved in Vertebrates; date=20100219 ||| term=species distribution, conserved in Eukaryotes; date=20100219 ||| term=species distribution, conserved in Metazoa; date=20100219 ||| term=modification, acetylated; residue=N_terminal; db_xref=PMID:20404563; cv=pt_mod; date=20100219 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0045143; homologous chromosome segregation
GO:0007131; reciprocal meiotic recombination
GO:0030989; dynein-driven meiotic oscillatory nuclear movement
GO:0045132; meiotic chromosome segregation
GO:0005737; cytoplasm
GO:0015630; microtubule cytoskeleton
GO:0071687; horsetail nucleus leading edge" ; primary_name "dil1" ; product "dynein intermediate light chain Dil1" ;
chromosome1 GeneDB CDS 4737605 4738147 . - . mRNA SPAC458.04c ; colour "2" ;
chromosome1 GeneDB CDS 4738189 4738283 . - . mRNA SPAC458.04c ; colour "2" ;
chromosome1 GeneDB CDS 4738330 4738740 . - . mRNA SPAC458.04c ; colour "2" ;
chromosome1 GeneDB CDS 4738779 4738854 . - . mRNA SPAC458.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 4738148 4738158 . - . misc_feature unknown_3889 ; colour "6" ; note "ctaatttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4738183 4738188 . - . misc_feature unknown_3890 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4738284 4738297 . - . misc_feature unknown_3891 ; colour "6" ; note "ctgatctgctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4738324 4738329 . - . misc_feature unknown_3892 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4740188 4740236 . + . mRNA SPAC458.05 ; Alias "pik3" ; ID "SPAC458.05" ; systematic_id "SPAC458.05" ; primary_name "pik3" ; gene "pik3 ||| vps34 ||| SPAC458.05" ; note "mRNA from SP32583" ;
chromosome1 GeneDB CDS_parts 4740237 4742642 . + . mRNA SPAC458.05 ; systematic_id "SPAC458.05" ; colour "2" ; gene "pik3 ||| vps34 ||| SPAC458.05" ; Alias "pik3" ; db_xref "SPD:28/28F06" ; synonym "vps34" ; GO "GO:0005942; phosphoinositide 3-kinase complex
GO:0016303; phosphatidylinositol 3-kinase activity
GO:0046488; phosphatidylinositol metabolism
GO:0031321; prospore formation
GO:0034613; cellular protein localization
GO:0030476; spore wall assembly (sensu Fungi)
GO:0007033; vacuole organization and biogenesis
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8719881; date=19700101 ||| term=orthologous to S. cerevisiae YLR240W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100705" ; primary_name "pik3" ; product "phosphatidylinositol 3-kinase Pik3" ; EC_number "2.7.1.137" ;
chromosome1 GeneDB CDS 4740237 4742642 . + . mRNA SPAC458.05 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4742643 4742814 . + . mRNA SPAC458.05 ; Alias "pik3" ; ID "SPAC458.05" ; db_xref "SPD:28/28F06" ; systematic_id "SPAC458.05" ; primary_name "pik3" ; gene "pik3 ||| vps34 ||| SPAC458.05" ; note "mRNA from SP32583" ;
chromosome1 GeneDB CDS_parts 4742869 4744167 . + . mRNA SPAC458.06 ; systematic_id "SPAC458.06" ; colour "2" ; gene "SPAC458.06" ; db_xref "SPD:22/22E09" ; synonym "atg18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR223C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0035091; phosphoinositide binding
GO:0005737; cytoplasm
GO:0000324; vacuole (sensu Fungi)
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; product "WD repeat protein involved in autophagy Atg18c" ;
chromosome1 GeneDB CDS 4742869 4742983 . + . mRNA SPAC458.06 ; colour "2" ;
chromosome1 GeneDB CDS 4743035 4743135 . + . mRNA SPAC458.06 ; colour "2" ;
chromosome1 GeneDB CDS 4743184 4743272 . + . mRNA SPAC458.06 ; colour "2" ;
chromosome1 GeneDB CDS 4743329 4743420 . + . mRNA SPAC458.06 ; colour "2" ;
chromosome1 GeneDB CDS 4743470 4744167 . + . mRNA SPAC458.06 ; colour "2" ;
chromosome1 GeneDB misc_feature 4742984 4742989 . + . misc_feature unknown_3893 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4743136 4743141 . + . misc_feature unknown_3894 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4743273 4743278 . + . misc_feature unknown_3895 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4743315 4743328 . + . misc_feature unknown_3896 ; colour "6" ; note "ctaacatatctaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4743421 4743426 . + . misc_feature unknown_3897 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4743452 4743469 . + . misc_feature unknown_3898 ; colour "6" ; note "ctgacttttgaaatgtag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 4744528 4744583 . + . mRNA SPAC458.07 ; Alias "tfa1" ; ID "SPAC458.07" ; db_xref "EMBL:AB176672" ; systematic_id "SPAC458.07" ; gene "tfa1 ||| SPAC458.07 ||| SPAPYUG7.01" ; primary_name "tfa1" ; note "mRNA from SPO310560" ;
chromosome1 GeneDB CDS_parts 4744584 4746099 . + . mRNA SPAC458.07 ; systematic_id "SPAC458.07" ; colour "2" ; gene "tfa1 ||| SPAC458.07 ||| SPAPYUG7.01" ; Alias "tfa1" ; db_xref "SPD:24/24F02" ; synonym "SPAPYUG7.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15743411; date=19700101 ||| term=orthologous to S. cerevisiae YKL028W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0005673; transcription factor TFIIE complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0005515; protein binding
GO:0051290; protein heterotetramerization
GO:0006367; transcription initiation from RNA polymerase II promoter" ; primary_name "tfa1" ; product "transcription factor TFIIE alpha subunit, TFIIEA, Tfa1" ;
chromosome1 GeneDB CDS 4744584 4744828 . + . mRNA SPAC458.07 ; colour "2" ;
chromosome1 GeneDB CDS 4744870 4745011 . + . mRNA SPAC458.07 ; colour "2" ;
chromosome1 GeneDB CDS 4745140 4746099 . + . mRNA SPAC458.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 4744698 4744711 . - . misc_feature unknown_3899 ; colour "6" ; note "ctgatcttgtgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4744733 4744738 . - . misc_feature unknown_3900 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4744812 4744916 . + . misc_feature unknown_3901 ; note "nominal overlap with clone SPAPYUG7 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 4744829 4744834 . + . misc_feature unknown_3902 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 4744829 4744869 . + . intron SPAC458.07 ; Alias "tfa1" ; db_xref "SPD:24/24F02" ; systematic_id "SPAC458.07" ; primary_name "tfa1" ; gene "tfa1 ||| SPAC458.07 ||| SPAPYUG7.01" ; note "confirmed by EST" ;
chromosome1 GeneDB misc_feature 4744858 4744869 . + . misc_feature unknown_3903 ; colour "6" ; note "ctaacctttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4745012 4745017 . + . misc_feature unknown_3904 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4745012 4745139 . + . intron SPAC458.07 ; Alias "tfa1" ; db_xref "SPD:24/24F02" ; systematic_id "SPAC458.07" ; primary_name "tfa1" ; gene "tfa1 ||| SPAC458.07 ||| SPAPYUG7.01" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4745128 4745139 . + . misc_feature unknown_3905 ; colour "6" ; note "ctaacttagcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4746100 4746206 . + . mRNA SPAC458.07 ; Alias "tfa1" ; ID "SPAC458.07" ; db_xref "EMBL:AB176672 ||| SPD:24/24F02" ; systematic_id "SPAC458.07" ; gene "tfa1 ||| SPAC458.07 ||| SPAPYUG7.01" ; primary_name "tfa1" ; note "mRNA from SPO310560" ;
chromosome1 GeneDB CDS_parts 4746193 4748288 . - . mRNA SPAPYUG7.02c ; Alias "sin1" ; systematic_id "SPAPYUG7.02c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL078W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; evidence=IDA; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10428959; date=20100709" ; GO "GO:0005515; protein binding
GO:0045931; positive regulation of progression through mitotic cell cycle
GO:0031098; stress-activated protein kinase signaling pathway
GO:0033554; cellular response to stress
GO:0031929; TOR signaling pathway
GO:0031932; TORC 2 complex" ; gene "sin1 ||| SPAPYUG7.02c" ; primary_name "sin1" ; product "stress activated MAP kinase interacting protein Sin1" ;
chromosome1 GeneDB CDS 4746193 4746283 . - . mRNA SPAPYUG7.02c ; colour "2" ;
chromosome1 GeneDB CDS 4746323 4748206 . - . mRNA SPAPYUG7.02c ; colour "2" ;
chromosome1 GeneDB CDS 4748266 4748288 . - . mRNA SPAPYUG7.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 4746284 4746296 . - . misc_feature unknown_3906 ; colour "6" ; note "ctaacgagttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4746317 4746322 . - . misc_feature unknown_3907 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4748207 4748226 . - . misc_feature unknown_3908 ; colour "6" ; note "ctaatacgtttattttacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4748260 4748265 . - . misc_feature unknown_3909 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4748287 4748438 . - . mRNA SPAPYUG7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPYUG7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4748861 4749138 . - . mRNA SPAPYUG7.03c ; Alias "mid2" ; ID "SPAPYUG7.03c" ; systematic_id "SPAPYUG7.03c" ; primary_name "mid2" ; gene "mid2 ||| SPAPYUG7.03c" ; note "mRNA from AU010872" ;
chromosome1 GeneDB CDS_parts 4749139 4751253 . - . mRNA SPAPYUG7.03c ; Alias "mid2" ; systematic_id "SPAPYUG7.03c" ; colour "2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, cell morphology, elongated and multiseptate; db_xref=PMID:12654901; date=20100727 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:16317047; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YJR092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000920; cell separation during cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0005525; GTP binding
GO:0005940; septin ring
GO:0031106; septin ring organization
GO:0031107; septin ring disassembly
GO:0031097; medial ring" ; gene "mid2 ||| SPAPYUG7.03c" ; primary_name "mid2" ; product "medial ring protein Mid2" ;
chromosome1 GeneDB CDS 4749139 4751253 . - . mRNA SPAPYUG7.03c ; colour "2" ;
chromosome1 GeneDB CDS_parts 4751684 4752332 . - . mRNA SPAPYUG7.04c ; systematic_id "SPAPYUG7.04c" ; colour "2" ; gene "rpb9 ||| SPAPYUG7.04c" ; Alias "rpb9" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020;" ; GO "GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0003899; DNA-directed RNA polymerase activity
GO:0006366; transcription from RNA polymerase II promoter
GO:0006283; transcription-coupled nucleotide- excision repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL070C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpb9" ; product "DNA-directed RNA polymerase II complex subunit Rpb9" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB CDS 4751684 4751734 . - . mRNA SPAPYUG7.04c ; colour "2" ;
chromosome1 GeneDB CDS 4751810 4751942 . - . mRNA SPAPYUG7.04c ; colour "2" ;
chromosome1 GeneDB CDS 4751985 4752034 . - . mRNA SPAPYUG7.04c ; colour "2" ;
chromosome1 GeneDB CDS 4752158 4752224 . - . mRNA SPAPYUG7.04c ; colour "2" ;
chromosome1 GeneDB CDS 4752292 4752332 . - . mRNA SPAPYUG7.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 4751735 4751747 . - . misc_feature unknown_3910 ; colour "6" ; note "ctgacttaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4751804 4751809 . - . misc_feature unknown_3911 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4751943 4751954 . - . misc_feature unknown_3912 ; colour "6" ; note "ctaaatttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4751979 4751984 . - . misc_feature unknown_3913 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4752035 4752047 . - . misc_feature unknown_3914 ; colour "6" ; note "ctaatttgtatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4752152 4752157 . - . misc_feature unknown_3915 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4752225 4752242 . - . misc_feature unknown_3916 ; colour "6" ; note "ctaacatgaaataaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4752286 4752291 . - . misc_feature unknown_3917 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4752331 4752397 . - . mRNA SPAPYUG7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPYUG7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4752728 4752793 . + . mRNA SPAPYUG7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPYUG7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4752794 4753642 . + . mRNA SPAPYUG7.05 ; systematic_id "SPAPYUG7.05" ; colour "7" ; GO "GO:0006561; proline biosynthesis
GO:0004735; pyrroline-5-carboxylate reductase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER023W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPAPYUG7.05" ; product "delta-1-pyrroline-5-carboxylate reductase (predicted)" ; EC_number "1.5.1.2" ;
chromosome1 GeneDB CDS 4752794 4753642 . + . mRNA SPAPYUG7.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4753643 4753830 . + . mRNA SPAPYUG7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPYUG7.05" ; systematic_id "SPAPYUG7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4754160 4754182 . + . mRNA SPAPYUG7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPYUG7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4754183 4754788 . + . mRNA SPAPYUG7.06 ; Alias "mug67" ; systematic_id "SPAPYUG7.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human PPEDE1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAPYUG7.06 ||| mug67" ; primary_name "mug67" ; product "PPPDE peptidase family (predicted)" ;
chromosome1 GeneDB CDS 4754183 4754788 . + . mRNA SPAPYUG7.06 ; colour "10" ;
chromosome1 GeneDB misc_feature 4754593 4755490 . + . misc_feature unknown_3918 ; note "nominal overlap with cosmid SPAC1782 and small insert clone pYUG7" ;
chromosome1 GeneDB CDS_parts 4755007 4760046 . + . mRNA SPAC1782.01 ; systematic_id "SPAC1782.01" ; colour "2" ; db_xref "SPD:48/48G11" ; Alias "ecm29" ; synonym "SPAPYUG7.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YHL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000502; proteasome complex (sensu Eukaryota)
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle
GO:0000502; proteasome complex" ; primary_name "ecm29" ; product "proteasome component Ecm29" ; reserved_name "ecm29" ;
chromosome1 GeneDB CDS 4755007 4760046 . + . mRNA SPAC1782.01 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4760047 4760096 . + . mRNA SPAC1782.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1782.01" ; systematic_id "SPAC1782.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4760104 4760300 . - . mRNA SPAC1782.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1782.02c" ; systematic_id "SPAC1782.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4760301 4760886 . - . mRNA SPAC1782.02c ; db_xref "SPD:06/06D03" ; systematic_id "SPAC1782.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR118C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC1782.02c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 4760301 4760651 . - . mRNA SPAC1782.02c ; colour "10" ;
chromosome1 GeneDB CDS 4760752 4760886 . - . mRNA SPAC1782.02c ; colour "10" ;
chromosome1 GeneDB misc_feature 4760652 4760669 . - . misc_feature unknown_3919 ; colour "6" ; note "ctgaccattataatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4760746 4760751 . - . misc_feature unknown_3920 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4760885 4761088 . - . mRNA SPAC1782.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1782.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4761262 4761806 . + . mRNA SPAC1782.03 ; ID "SPAC1782.03" ; db_xref "EMBL:AU009439" ; systematic_id "SPAC1782.03" ; gene "SPAC1782.03" ;
chromosome1 GeneDB CDS_parts 4761807 4762874 . + . mRNA SPAC1782.03 ; systematic_id "SPAC1782.03" ; colour "10" ; gene "SPAC1782.03" ; db_xref "SPD:16/16D05" ; Alias "saf3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human MFAP1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "saf3" ; product "microfibrillar-associated protein family protein" ; reserved_name "saf3" ;
chromosome1 GeneDB CDS 4761807 4762874 . + . mRNA SPAC1782.03 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4762875 4762908 . + . mRNA SPAC1782.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1782.03" ; systematic_id "SPAC1782.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4763069 4763078 . + . mRNA SPAC1782.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1782.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4763079 4763648 . + . mRNA SPAC1782.04 ; systematic_id "SPAC1782.04" ; colour "7" ; gene "cox24 ||| SPAC1782.04" ; Alias "cox24" ; db_xref "SPD:06/06A06" ; GO "GO:0005739; mitochondrion
GO:0006397; mRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cox24" ; product "mitochondrial mRNA processing protein Cox24 (predicted)" ;
chromosome1 GeneDB CDS 4763079 4763235 . + . mRNA SPAC1782.04 ; colour "7" ;
chromosome1 GeneDB CDS 4763278 4763648 . + . mRNA SPAC1782.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 4763236 4763241 . + . misc_feature unknown_3921 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4763261 4763277 . + . misc_feature unknown_3922 ; colour "6" ; note "ctaacttcattgcgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4763649 4764112 . + . mRNA SPAC1782.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1782.04" ; systematic_id "SPAC1782.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4764447 4764448 . + . mRNA SPAC1782.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1782.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4764449 4765507 . + . mRNA SPAC1782.05 ; db_xref "SPD:16/16C02" ; systematic_id "SPAC1782.05" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0007052; mitotic spindle organization and biogenesis
GO:0072543; phosphatase type 2A activator activity
GO:0003755; peptidyl prolyl cis-trans isomerase activity
GO:0007165; signal transduction" ; gene "SPAC1782.05" ; product "phosphotyrosyl phosphatase activator homolog (predicted)" ;
chromosome1 GeneDB CDS 4764449 4765507 . + . mRNA SPAC1782.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4765508 4765711 . + . mRNA SPAC1782.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1782.05" ; systematic_id "SPAC1782.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4765651 4765965 . - . mRNA SPAC1782.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1782.06c" ; systematic_id "SPAC1782.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4765966 4766814 . - . mRNA SPAC1782.06c ; systematic_id "SPAC1782.06c" ; colour "7" ; db_xref "SPD:11/11B03" ; Alias "phb1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR132C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0000001; mitochondrion inheritance
GO:0005743; mitochondrial inner membrane
GO:0006457; protein folding
GO:0007007; inner mitochondrial membrane organization" ; primary_name "phb1" ; product "prohibitin Phb1 (predicted)" ;
chromosome1 GeneDB CDS 4765966 4766814 . - . mRNA SPAC1782.06c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4767085 4767109 . + . mRNA SPAC1782.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1782.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4767110 4767725 . + . mRNA SPAC1782.07 ; systematic_id "SPAC1782.07" ; colour "2" ; gene "qcr8 ||| SPAC1782.07" ; Alias "qcr8" ; db_xref "SPD:31/31F11" ; GO "GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0048039; ubiquinone binding
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0009060; aerobic respiration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL166W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "qcr8" ; product "ubiquinol-cytochrome-c reductase complex subunit 7" ; EC_number "1.10.2.2" ;
chromosome1 GeneDB CDS 4767110 4767141 . + . mRNA SPAC1782.07 ; colour "2" ;
chromosome1 GeneDB CDS 4767331 4767348 . + . mRNA SPAC1782.07 ; colour "2" ;
chromosome1 GeneDB CDS 4767394 4767607 . + . mRNA SPAC1782.07 ; colour "2" ;
chromosome1 GeneDB CDS 4767711 4767725 . + . mRNA SPAC1782.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 4767142 4767147 . + . misc_feature unknown_3923 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4767142 4767330 . + . intron SPAC1782.07 ; Alias "qcr8" ; db_xref "SPD:31/31F11" ; systematic_id "SPAC1782.07" ; primary_name "qcr8" ; gene "qcr8 ||| SPAC1782.07" ; note "intron confirmed by EST" ;
chromosome1 GeneDB misc_feature 4767316 4767330 . + . misc_feature unknown_3924 ; colour "6" ; note "ctaacacatgaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4767349 4767354 . + . misc_feature unknown_3925 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4767349 4767393 . + . intron SPAC1782.07 ; Alias "qcr8" ; db_xref "SPD:31/31F11" ; systematic_id "SPAC1782.07" ; primary_name "qcr8" ; gene "qcr8 ||| SPAC1782.07" ; note "intron confirmed by EST" ;
chromosome1 GeneDB misc_feature 4767380 4767393 . + . misc_feature unknown_3926 ; colour "6" ; note "cttactttaataag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4767608 4767613 . + . misc_feature unknown_3927 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4767695 4767710 . + . misc_feature unknown_3928 ; colour "6" ; note "ctaatatgtggtttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4767726 4767856 . + . mRNA SPAC1782.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1782.07" ; systematic_id "SPAC1782.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4767907 4769529 . - . mRNA SPAC1782.08c ; systematic_id "SPAC1782.08c" ; colour "7" ; gene "rex3 ||| SPAC1782.08c" ; Alias "rex3" ; db_xref "SPD:26/26A01" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008408; 3'-5' exonuclease activity
GO:0006396; RNA processing
GO:0043628; ncRNA 3'-end processing
GO:0034476; U5 snRNA 3'-end processing
GO:0000467; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR107W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rex3" ; product "exonuclease Rex3 (predicted)" ;
chromosome1 GeneDB CDS 4767907 4769529 . - . mRNA SPAC1782.08c ; colour "7" ;
chromosome1 GeneDB CDS_parts 4769991 4771659 . - . mRNA SPAC1782.09c ; systematic_id "SPAC1782.09c" ; colour "2" ; gene "clp1 ||| flp1 ||| SPAC1782.09c" ; Alias "clp1" ; db_xref "SPD:45/45E07" ; synonym "flp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11683392; date=19700101 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=complementation, functionally complemented by human CDC14; db_xref=PMID:15911625; cv=complementation; date=19700101 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:16085490; cv=localization; date=19700101 ||| term=orthologous to S. cerevisiae YFR028C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; db_xref=PMID:11683392; date=20090213 ||| term=localization of chromosomal passenger complex to spindle midzone; db_xref=PMID:19570910; date=20090707 ||| term=target is Klp9; qualifier=dephosphorylates; db_xref=PMID:19666868; date=20090820 ||| term=target is Ase1; qualifier=dephosphorylates; db_xref=PMID:19666868; date=20090820 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:11448769; date=20101124 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:11448769; date=20101124 ||| term=target is Clp1; date=20101124" ; GO "GO:0000777; condensed chromosome kinetochore
GO:0005826; contractile ring
GO:0005737; cytoplasm
GO:0031097; medail ring
GO:0005730; nucleolus
GO:0005816; spindle pole body
GO:0004721; phosphoprotein phosphatase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004864; protein phosphatase inhibitor activity
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0031566; contractile ring maintenance involved in cytokinesis
GO:0031565; cytokinesis checkpoint
GO:0031565; cytokinesis checkpoint
GO:0000070; mitotic sister chromatid segregation
GO:0045736; negative regulation of cyclin- dependent protein kinase activity
GO:0031031; positive regulation of septation initiation signaling
GO:0006470; protein amino acid dephosphorylation
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0007096; regulation of exit from mitosis
GO:0031134; sister chromatid biorientation" ; primary_name "clp1" ; product "Cdc14-related protein phosphatase Clp1/Flp1" ;
chromosome1 GeneDB CDS 4769991 4771555 . - . mRNA SPAC1782.09c ; colour "2" ;
chromosome1 GeneDB CDS 4771611 4771659 . - . mRNA SPAC1782.09c ; colour "2" ;
chromosome1 GeneDB misc_feature 4771556 4771571 . - . misc_feature unknown_3929 ; colour "6" ; note "ttaacatgttaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4771605 4771610 . - . misc_feature unknown_3930 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4771658 4771708 . - . mRNA SPAC1782.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1782.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4772032 4772681 . - . mRNA SPAC1782.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1782.10c" ; systematic_id "SPAC1782.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4772682 4773146 . - . mRNA SPAC1782.10c ; systematic_id "SPAC1782.10c" ; colour "2" ; gene "nhp2 ||| SPAC1782.10c" ; Alias "nhp2" ; db_xref "SPD:04/04C04" ; GO "GO:0002103; endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding
GO:0031118; rRNA pseudouridine synthesis
GO:0031120; snRNA pseudouridine synthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL208W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "nhp2" ; product "RNA-binding protein Nhp2 (predicted)" ;
chromosome1 GeneDB CDS 4772682 4773146 . - . mRNA SPAC1782.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4773687 4773791 . + . mRNA SPAC1782.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1782.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4773792 4774506 . + . mRNA SPAC1782.11 ; systematic_id "SPAC1782.11" ; colour "2" ; gene "met14 ||| SPAC1782.11" ; Alias "met14" ; db_xref "SPD:08/08E03" ; GO "GO:0000103; sulfate assimilation
GO:0004020; adenylylsulfate kinase activity
GO:0009086; methionine biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL001C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "met14" ; product "adenylyl-sulfate kinase (predicted)" ;
chromosome1 GeneDB CDS 4773792 4774260 . + . mRNA SPAC1782.11 ; colour "2" ;
chromosome1 GeneDB CDS 4774367 4774506 . + . mRNA SPAC1782.11 ; colour "2" ;
chromosome1 GeneDB misc_feature 4774261 4774266 . + . misc_feature unknown_3931 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB intron 4774261 4774366 . + . intron SPAC1782.11 ; Alias "met14" ; db_xref "SPD:08/08E03" ; systematic_id "SPAC1782.11" ; primary_name "met14" ; gene "met14 ||| SPAC1782.11" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4774353 4774366 . + . misc_feature unknown_3932 ; colour "6" ; note "ctaaccggttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4774507 4774561 . + . mRNA SPAC1782.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1782.11" ; systematic_id "SPAC1782.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4774686 4775194 . - . mRNA SPAC1782.12c ; db_xref "SPD:05/05A05" ; systematic_id "SPAC1782.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPAC1782.12c" ; product "DUF423 protein" ;
chromosome1 GeneDB CDS 4774686 4774934 . - . mRNA SPAC1782.12c ; colour "10" ;
chromosome1 GeneDB CDS 4774991 4775067 . - . mRNA SPAC1782.12c ; colour "10" ;
chromosome1 GeneDB CDS 4775164 4775194 . - . mRNA SPAC1782.12c ; colour "10" ;
chromosome1 GeneDB misc_feature 4774935 4774951 . - . misc_feature unknown_3933 ; colour "6" ; note "ttaacataaaattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4774985 4774990 . - . misc_feature unknown_3934 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4775068 4775082 . - . misc_feature unknown_3935 ; colour "6" ; note "ctaacaataaaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4775158 4775163 . - . misc_feature unknown_3936 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4775723 4775837 . + . mRNA SPAC11H11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11H11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4775838 4777340 . + . mRNA SPAC11H11.01 ; systematic_id "SPAC11H11.01" ; colour "2" ; gene "SPAC11H11.01 ||| vps23 ||| sst6" ; Alias "sst6" ; db_xref "SPD:50/50G09" ; synonym "cps23" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=human TGS101 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YCL008C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20090725" ; GO "GO:0000813; ESCRT I complex
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport
GO:0006897; endocytosis" ; primary_name "sst6" ; product "ESCRT I complex subunit Vps23" ;
chromosome1 GeneDB CDS 4775838 4775894 . + . mRNA SPAC11H11.01 ; colour "2" ;
chromosome1 GeneDB CDS 4775934 4777340 . + . mRNA SPAC11H11.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 4775844 4775944 . + . misc_feature unknown_3937 ; note "nominal overlap with cosmid SPAC1782 and cosmid SPAC11H11" ;
chromosome1 GeneDB misc_feature 4775895 4775900 . + . misc_feature unknown_3938 ; colour "6" ; note "gtaccg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4775918 4775933 . + . misc_feature unknown_3939 ; colour "6" ; note "ttaacctgaaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4777341 4777368 . + . mRNA SPAC11H11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11H11.01" ; systematic_id "SPAC11H11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4777439 4778429 . - . mRNA SPAC11H11.02c ; systematic_id "SPAC11H11.02c" ; colour "8" ; gene "SPAC11H11.02c ||| mug162" ; db_xref "SPD:14/14D10" ; Alias "mug162" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug162" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4777439 4777498 . - . mRNA SPAC11H11.02c ; colour "8" ;
chromosome1 GeneDB CDS 4777537 4777956 . - . mRNA SPAC11H11.02c ; colour "8" ;
chromosome1 GeneDB CDS 4778009 4778147 . - . mRNA SPAC11H11.02c ; colour "8" ;
chromosome1 GeneDB CDS 4778254 4778429 . - . mRNA SPAC11H11.02c ; colour "8" ;
chromosome1 GeneDB misc_feature 4777499 4777511 . - . misc_feature unknown_3940 ; colour "6" ; note "ctaacctttctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4777531 4777536 . - . misc_feature unknown_3941 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4777957 4777969 . - . misc_feature unknown_3942 ; colour "6" ; note "ttaatgattgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4778003 4778008 . - . misc_feature unknown_3943 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4778148 4778164 . - . misc_feature unknown_3944 ; colour "6" ; note "ctaactatttcaatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4778248 4778253 . - . misc_feature unknown_3945 ; colour "6" ; note "gtatct, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4778428 4778521 . - . mRNA SPAC11H11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11H11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4779020 4779180 . - . mRNA SPAC11H11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11H11.03c" ; systematic_id "SPAC11H11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4779181 4780249 . - . mRNA SPAC11H11.03c ; db_xref "SPD:16/16D11" ; systematic_id "SPAC11H11.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL199C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human N4BP2 ortholog; date=20091118" ; GO "GO:0006281; DNA repair
GO:0046404; ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0004519; endonuclease activity" ; colour "7" ; gene "SPAC11H11.03c" ; product "SMR and DUF1771 domain protein (predicted)" ;
chromosome1 GeneDB CDS 4779181 4779484 . - . mRNA SPAC11H11.03c ; colour "7" ;
chromosome1 GeneDB CDS 4779523 4779667 . - . mRNA SPAC11H11.03c ; colour "7" ;
chromosome1 GeneDB CDS 4780023 4780185 . - . mRNA SPAC11H11.03c ; colour "7" ;
chromosome1 GeneDB CDS 4780241 4780249 . - . mRNA SPAC11H11.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 4779485 4779499 . - . misc_feature unknown_3946 ; colour "6" ; note "ttaactcttttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4779517 4779522 . - . misc_feature unknown_3947 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4779668 4779681 . - . misc_feature unknown_3948 ; colour "6" ; note "ctaattattgatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4780017 4780022 . - . misc_feature unknown_3949 ; colour "6" ; note "gtaatc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4780186 4780200 . - . misc_feature unknown_3950 ; colour "6" ; note "ctaactttattgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4780235 4780240 . - . misc_feature unknown_3951 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4780248 4780284 . - . mRNA SPAC11H11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11H11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4780688 4781734 . + . mRNA SPAC11H11.04 ; systematic_id "SPAC11H11.04" ; colour "2" ; gene "mam2 ||| SPAC11H11.04" ; Alias "mam2" ; db_xref "SPD:15/15H10" ; GO "GO:0000750; pheromone-dependent signal transduction during conjugation with cellular fusion
GO:0004932; mating-type factor pheromone receptor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YFL026W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1657593; date=20070716 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mam2" ; product "pheromone p-factor receptor" ;
chromosome1 GeneDB CDS 4780688 4781734 . + . mRNA SPAC11H11.04 ; colour "2" ;
chromosome1 GeneDB CDS_parts 4782047 4782273 . - . mRNA SPAC11H11.05c ; systematic_id "SPAC11H11.05c" ; colour "2" ; gene "fta6 ||| SPAC11H11.05c ||| sma6" ; Alias "fta6" ; db_xref "SPD:01/01A12" ; synonym "sma6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; kinetochore" ; primary_name "fta6" ; product "Sim4 and Mal2 associated (4 and 2 associated) protein 6" ;
chromosome1 GeneDB CDS 4782047 4782195 . - . mRNA SPAC11H11.05c ; colour "2" ;
chromosome1 GeneDB CDS 4782243 4782273 . - . mRNA SPAC11H11.05c ; colour "2" ;
chromosome1 GeneDB misc_feature 4782196 4782224 . - . misc_feature unknown_3952 ; colour "6" ; note "ttaatagctcaatacttacgtgtatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4782237 4782242 . - . misc_feature unknown_3953 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4782589 4783842 . + . misc_feature unknown_3954 ; note "nominal overlap with cosmid SPAC22F8 and cosmid SPAC11H11" ;
chromosome1 GeneDB 5'-UTR 4783037 4783054 . + . mRNA SPAC11H11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11H11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4783055 4784277 . + . mRNA SPAC11H11.06 ; systematic_id "SPAC11H11.06" ; colour "2" ; gene "arp2 ||| SPAC11H11.06 ||| SPAC22F8.01" ; Alias "arp2" ; db_xref "SPD:19/19D11" ; synonym "SPAC22F8.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL029W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030100; regulation of endocytosis
GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0000147; actin cortical patch assembly" ; primary_name "arp2" ; product "ARP2/3 actin-organizing complex subunit Arp2" ;
chromosome1 GeneDB CDS 4783055 4783102 . + . mRNA SPAC11H11.06 ; colour "2" ;
chromosome1 GeneDB CDS 4783153 4784277 . + . mRNA SPAC11H11.06 ; colour "2" ;
chromosome1 GeneDB misc_feature 4783103 4783108 . + . misc_feature unknown_3955 ; colour "6" ; note "gtaatc, splice donor sequence" ;
chromosome1 GeneDB intron 4783103 4783152 . + . intron SPAC11H11.06 ; Alias "arp2" ; db_xref "SPD:19/19D11" ; systematic_id "SPAC11H11.06" ; primary_name "arp2" ; gene "arp2 ||| SPAC11H11.06 ||| SPAC22F8.01" ; note "confirmed ||| confirmed intron" ;
chromosome1 GeneDB misc_feature 4783139 4783152 . + . misc_feature unknown_3956 ; colour "6" ; note "ctaacgttagcaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4784278 4784682 . + . mRNA SPAC11H11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11H11.06" ; systematic_id "SPAC11H11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4785162 4786280 . - . mRNA SPAC22F8.02c ; systematic_id "SPAC22F8.02c" ; colour "2" ; gene "pvg5 ||| SPAC22F8.02c ||| mug50" ; Alias "pvg5" ; db_xref "SPD:17/17F02" ; synonym "mug50" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "cell wall biosynthesis (sensu Fungi); GO:0009272; GO:0009272
GO:0051072; 4,6-pyruvylated galactose residue biosynthesis
GO:0009277; fungal-type cell wall" ; primary_name "pvg5" ; product "PvGal biosynthesis protein Pvg5" ;
chromosome1 GeneDB CDS 4785162 4786280 . - . mRNA SPAC22F8.02c ; colour "2" ;
chromosome1 GeneDB misc_RNA 4787154 4787928 . - . misc_RNA SPNCRNA.253 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.253" ; synonym "SPNG905" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB CDS_parts 4788494 4788895 . - . mRNA SPAC22F8.03c ; db_xref "SPD:03/03A11" ; systematic_id "SPAC22F8.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC22F8.03c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4788494 4788895 . - . mRNA SPAC22F8.03c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 4789414 4789788 . + . mRNA SPAC22F8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4789789 4790940 . + . mRNA SPAC22F8.04 ; db_xref "SPD:18/18B11" ; systematic_id "SPAC22F8.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0035436; triose phosphate transmembrane transport
GO:0071917; triose-phosphate transmembrane transporter activity" ; colour "7" ; gene "SPAC22F8.04" ; product "triose phosphate transporter (predicted)" ;
chromosome1 GeneDB CDS 4789789 4790940 . + . mRNA SPAC22F8.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4790941 4791178 . + . mRNA SPAC22F8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F8.04" ; systematic_id "SPAC22F8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4791890 4792307 . + . mRNA SPAC22F8.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F8.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4792308 4794983 . + . mRNA SPAC22F8.05 ; db_xref "SPD:38/38H06" ; systematic_id "SPAC22F8.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR261C and YML100W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0003825; alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0005992; trehalose biosynthesis
GO:0005946; alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)" ; gene "SPAC22F8.05" ; product "alpha,alpha-trehalose-phosphate synthase (predicted)" ;
chromosome1 GeneDB CDS 4792308 4794983 . + . mRNA SPAC22F8.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4794984 4795077 . + . mRNA SPAC22F8.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F8.05" ; systematic_id "SPAC22F8.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4795357 4795478 . + . mRNA SPAC22F8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4795479 4796156 . + . mRNA SPAC22F8.06 ; systematic_id "SPAC22F8.06" ; colour "2" ; gene "pam1 ||| SPAC22F8.06" ; Alias "pam1" ; db_xref "SPD:42/42H07" ; GO "GO:0005634; nucleus
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "pam1" ; product "20S proteasome component beta 6" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB CDS 4795479 4796156 . + . mRNA SPAC22F8.06 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4796157 4796290 . + . mRNA SPAC22F8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F8.06" ; systematic_id "SPAC22F8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 4796977 4797059 . + . tRNA SPATRNAALA.06 ; systematic_id "SPATRNAALA.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033430; CGC codon-amino acid adaptor activity" ; product "tRNA Alanine" ; note "tRNA Ala anticodon CGC, Cove score 69.67" ;
chromosome1 GeneDB intron 4797013 4797023 . + . intron SPATRNAALA.06 ; systematic_id "SPATRNAALA.06" ; note "intron tRNA Ala anticodon CGC" ;
chromosome1 GeneDB 3'-UTR 4797251 4797266 . - . mRNA SPAC22F8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F8.07c" ; systematic_id "SPAC22F8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4797267 4798928 . - . mRNA SPAC22F8.07c ; systematic_id "SPAC22F8.07c" ; colour "2" ; db_xref "SPD:45/45E04" ; Alias "rtf1" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0042802; identical protein binding
GO:0043110; rDNA spacer replication fork barrier binding
GO:0071171; site-specific DNA replication termination at RTS1 barrier" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YBR049C and YDR026c; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=EMBL:AJ627891; date=20070728" ; primary_name "rtf1" ; product "replication termination factor Rtf1" ;
chromosome1 GeneDB CDS 4797267 4797376 . - . mRNA SPAC22F8.07c ; colour "2" ;
chromosome1 GeneDB CDS 4797424 4797575 . - . mRNA SPAC22F8.07c ; colour "2" ;
chromosome1 GeneDB CDS 4797621 4797953 . - . mRNA SPAC22F8.07c ; colour "2" ;
chromosome1 GeneDB CDS 4797992 4798103 . - . mRNA SPAC22F8.07c ; colour "2" ;
chromosome1 GeneDB CDS 4798143 4798230 . - . mRNA SPAC22F8.07c ; colour "2" ;
chromosome1 GeneDB CDS 4798276 4798442 . - . mRNA SPAC22F8.07c ; colour "2" ;
chromosome1 GeneDB CDS 4798490 4798928 . - . mRNA SPAC22F8.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 4797377 4797388 . - . misc_feature unknown_3957 ; colour "6" ; note "ttaacgctttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4797377 4797423 . - . intron SPAC22F8.07c ; db_xref "SPD:45/45E04" ; systematic_id "SPAC22F8.07c" ; note "confirmed by AJ627891" ;
chromosome1 GeneDB misc_feature 4797418 4797423 . - . misc_feature unknown_3958 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB intron 4797576 4797620 . - . intron SPAC22F8.07c ; db_xref "SPD:45/45E04" ; systematic_id "SPAC22F8.07c" ; note "confirmed by AJ627891" ;
chromosome1 GeneDB misc_feature 4797954 4797964 . - . misc_feature unknown_3959 ; colour "6" ; note "ctaactaatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4797954 4797991 . - . intron SPAC22F8.07c ; db_xref "SPD:45/45E04" ; systematic_id "SPAC22F8.07c" ; note "confirmed by AJ627891" ;
chromosome1 GeneDB misc_feature 4797986 4797991 . - . misc_feature unknown_3960 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4798104 4798113 . - . misc_feature unknown_3961 ; colour "6" ; note "ttaataatag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4798104 4798142 . - . intron SPAC22F8.07c ; db_xref "SPD:45/45E04" ; systematic_id "SPAC22F8.07c" ; note "confirmed by AJ627891" ;
chromosome1 GeneDB misc_feature 4798137 4798142 . - . misc_feature unknown_3962 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4798231 4798275 . - . intron SPAC22F8.07c ; db_xref "SPD:45/45E04" ; systematic_id "SPAC22F8.07c" ; note "confirmed by AJ627891" ;
chromosome1 GeneDB misc_feature 4798443 4798457 . - . misc_feature unknown_3963 ; colour "6" ; note "ctaattcaagtctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4798443 4798489 . - . intron SPAC22F8.07c ; db_xref "SPD:45/45E04" ; systematic_id "SPAC22F8.07c" ; note "confirmed by AJ627891" ;
chromosome1 GeneDB misc_feature 4798484 4798489 . - . misc_feature unknown_3964 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4798927 4799334 . - . mRNA SPAC22F8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4799587 4799754 . + . mRNA SPAC22F8.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F8.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4799755 4802535 . + . mRNA SPAC22F8.08 ; systematic_id "SPAC22F8.08" ; colour "2" ; gene "SPAC22F8.08" ; Alias "sec24" ; db_xref "SPD:29/29D08" ; synonym "sfb2" ; GO "GO:0030127; COPII vesicle coat
GO:0006886; intracellular protein transport
GO:0006914; autophagy
GO:0070971; endoplasmic reticulum exit site
GO:0090110; cargo loading into COPII-coated vesicle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL109C and YNL049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec24" ; product "COPII cargo receptor Sec24/Sfb2 subunit" ;
chromosome1 GeneDB CDS 4799755 4802535 . + . mRNA SPAC22F8.08 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4802536 4802640 . + . mRNA SPAC22F8.08 ; ID "SPAC22F8.08" ; db_xref "EMBL:D89149 ||| SPD:29/29D08" ; systematic_id "SPAC22F8.08" ; gene "SPAC22F8.08" ;
chromosome1 GeneDB 5'-UTR 4803166 4803178 . + . mRNA SPAC22F8.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F8.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4803179 4804493 . + . mRNA SPAC22F8.09 ; systematic_id "SPAC22F8.09" ; colour "7" ; gene "rrp16 ||| nop53 ||| SPAC22F8.09" ; Alias "rrp16" ; db_xref "SPD:22/22H08" ; synonym "nop53" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL146C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005730; nucleolus
GO:0000055; ribosomal large subunit export from nucleus
GO:0042254; ribosome biogenesis" ; primary_name "rrp16" ; product "rRNA processing protein Rrp16 (predicted)" ;
chromosome1 GeneDB CDS 4803179 4803315 . + . mRNA SPAC22F8.09 ; colour "7" ;
chromosome1 GeneDB CDS 4803371 4804493 . + . mRNA SPAC22F8.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 4803316 4803321 . + . misc_feature unknown_3965 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4803357 4803370 . + . misc_feature unknown_3966 ; colour "6" ; note "ttaacttaaaacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4804494 4804539 . + . mRNA SPAC22F8.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F8.09" ; systematic_id "SPAC22F8.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4804630 4806435 . - . mRNA SPAC22F8.10c ; systematic_id "SPAC22F8.10c" ; colour "7" ; gene "sap145 ||| SPAC22F8.10c" ; Alias "sap145" ; db_xref "SPD:36/36E05" ; GO "GO:0005686; snRNP U2
GO:0005681; spliceosome complex
GO:0003723; RNA binding
GO:0000245; spliceosome assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YMR240C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sap145" ; product "U2 snRNP-associated protein Sap145 (predicted)" ;
chromosome1 GeneDB CDS 4804630 4806435 . - . mRNA SPAC22F8.10c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4807561 4807785 . + . mRNA SPAC22F8.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F8.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4807786 4810485 . + . mRNA SPAC22F8.11 ; systematic_id "SPAC22F8.11" ; colour "2" ; gene "plc1 ||| SPAC22F8.11" ; Alias "plc1" ; db_xref "SPD:47/47B02" ; GO "GO:0005634; nucleus
GO:0005509; calcium ion binding
GO:0004435; phosphoinositide phospholipase C activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0048017; inositol lipid-mediated signaling
GO:0019220; regulation of phosphate metabolism
GO:0034644; cellular response to UV
GO:0007165; signal transduction
GO:0044242; cellular lipid catabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=C2 domain; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL268W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "plc1" ; product "phosphoinositide phospholipase C Plc1" ; EC_number "3.1.4.11" ;
chromosome1 GeneDB CDS 4807786 4810485 . + . mRNA SPAC22F8.11 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4810486 4810699 . + . mRNA SPAC22F8.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F8.11" ; systematic_id "SPAC22F8.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4810699 4810769 . - . mRNA SPAC22F8.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22F8.12c" ; systematic_id "SPAC22F8.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4810770 4811267 . - . mRNA SPAC22F8.12c ; systematic_id "SPAC22F8.12c" ; colour "2" ; gene "shf1 ||| SPAC22F8.12c" ; Alias "shf1" ; db_xref "SPD:04/04G11" ; GO "GO:0033503; HULC complex
GO:0004842; ubiquitin-protein ligase activity
GO:0006342; chromatin silencing
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL055C; date=20070716 ||| term=species distribution, conserved in Fungi; date=20090825 ||| term=species distribution, conserved in Fungi only; date=20090825 ||| term=misc, possibly related to human/mouse periphilin; cv=misc; date=20100226 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20101115" ; primary_name "shf1" ; product "small histone ubiquitination factor Shf1" ;
chromosome1 GeneDB CDS 4810770 4811267 . - . mRNA SPAC22F8.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4811266 4811301 . - . mRNA SPAC22F8.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22F8.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4811964 4812098 . + . mRNA SPAC20G4.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G4.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4812099 4813065 . + . mRNA SPAC20G4.01 ; systematic_id "SPAC20G4.01" ; colour "7" ; gene "caf16 ||| SPAC22F8.13 ||| SPAC20G4.01" ; Alias "caf16" ; db_xref "SPD:50/50C01" ; synonym "SPAC22F8.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YFL028C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030014; CCR4-NOT complex
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0006354; RNA elongation
GO:0006402; mRNA catabolic process
GO:0006355; regulation of transcription, DNA- dependent
GO:0006367; transcription initiation from RNA polymerasse II promoter
GO:0006368; RNA elongation from RNA polymarase II promoter" ; primary_name "caf16" ; product "CCR4-Not complex subunit Caf16 (predicted)" ;
chromosome1 GeneDB CDS 4812099 4812222 . + . mRNA SPAC20G4.01 ; colour "7" ;
chromosome1 GeneDB CDS 4812302 4812421 . + . mRNA SPAC20G4.01 ; colour "7" ;
chromosome1 GeneDB CDS 4812467 4813065 . + . mRNA SPAC20G4.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 4812174 4812177 . + . misc_feature unknown_3967 ; note "nominal overlap with cosmid SPAC22F8 and SPAC20G4" ;
chromosome1 GeneDB misc_feature 4812223 4812228 . + . misc_feature unknown_3968 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4812268 4812301 . + . misc_feature unknown_3969 ; colour "6" ; note "ctaactgatgtcctcttggaattttgttaaacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4812422 4812427 . + . misc_feature unknown_3970 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4812445 4812466 . + . misc_feature unknown_3971 ; colour "6" ; note "ttactgatgtgtgcgtttgtag, splice branch and acceptor s equence" ;
chromosome1 GeneDB 3'-UTR 4813066 4813117 . + . mRNA SPAC20G4.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20G4.01" ; systematic_id "SPAC20G4.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4813225 4817343 . - . mRNA SPAC20G4.02c ; systematic_id "SPAC20G4.02c" ; colour "2" ; gene "fus1 ||| SPAC20G4.02c" ; Alias "fus1" ; db_xref "SPD:30/30F08" ; GO "GO:0032220; plasma membrane fusion during cytogamy
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0003779; actin binding
GO:0005937; mating projection
GO:0051017; actin cable formation
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL271C and YIL159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fus1" ; product "formin Fus1" ;
chromosome1 GeneDB CDS 4813225 4817343 . - . mRNA SPAC20G4.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4817342 4817740 . - . mRNA SPAC20G4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4818071 4818258 . - . mRNA SPAC20G4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20G4.03c" ; systematic_id "SPAC20G4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4818259 4820373 . - . mRNA SPAC20G4.03c ; systematic_id "SPAC20G4.03c" ; colour "2" ; gene "hri1 ||| SPAC20G4.03c" ; Alias "hri1" ; db_xref "SPD:28/28A04" ; GO "GO:0005524; ATP binding
GO:0004694; eukaryotic translation initiation factor 2alpha kinase activity
; protein binding
GO:0033554; cellular response to stress
GO:0032063; negative regulation of translational initiation in response to osmotic stress
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HRI subfamily; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12242291; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18502752; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Tif211; qualifier=phosphorylates; db_xref=PMID:12242291; date=20100820" ; primary_name "hri1" ; product "eIF2 alpha kinase Hri1" ;
chromosome1 GeneDB CDS 4818259 4820373 . - . mRNA SPAC20G4.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4820372 4820657 . - . mRNA SPAC20G4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4820804 4821352 . + . misc_RNA SPNCRNA.54 ; Alias "prl54" ; db_xref "EMBL:AB084866 ||| PMID:12597277" ; systematic_id "SPNCRNA.54" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl54" ; gene "prl54 ||| SPNCRNA.54" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome1 GeneDB 3'-UTR 4821040 4821490 . - . mRNA SPAC20G4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20G4.04c" ; systematic_id "SPAC20G4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4821491 4822578 . - . mRNA SPAC20G4.04c ; systematic_id "SPAC20G4.04c" ; colour "2" ; db_xref "SPD:17/17A02" ; Alias "hus1" ; GO "GO:0030896; checkpoint clamp complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031574; S-M checkpoint
GO:0031573; intra-S DNA damage checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007095; mitotic cell cycle G2-M transition DNA damage checkpoint" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, phosphorylated; qualifier=during_DNA_damage; cv=pt_mod; db_xref=PMID:9524127; date=20090213 ||| term=orthologous to S. cerevisiae YLR288C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Hydroxy Urea Sensitive; cv=name_description; date=20090729 ||| term=phenotype, sensitive to HU; cv=phenotype; date=20090729" ; primary_name "hus1" ; product "checkpoint clamp complex protein Hus1" ;
chromosome1 GeneDB CDS 4821491 4821594 . - . mRNA SPAC20G4.04c ; colour "2" ;
chromosome1 GeneDB CDS 4821652 4822246 . - . mRNA SPAC20G4.04c ; colour "2" ;
chromosome1 GeneDB CDS 4822301 4822313 . - . mRNA SPAC20G4.04c ; colour "2" ;
chromosome1 GeneDB CDS 4822379 4822487 . - . mRNA SPAC20G4.04c ; colour "2" ;
chromosome1 GeneDB CDS 4822536 4822578 . - . mRNA SPAC20G4.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 4821595 4821614 . - . misc_feature unknown_3972 ; colour "6" ; note "ctaacctttttacattacag, splice branch and acceptor seq uence" ;
chromosome1 GeneDB intron 4821595 4821651 . - . intron SPAC20G4.04c ; db_xref "SPD:17/17A02" ; systematic_id "SPAC20G4.04c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4821646 4821651 . - . misc_feature unknown_3973 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4822247 4822267 . - . misc_feature unknown_3974 ; colour "6" ; note "ctaactaacgtaaacggaaag, splice branch and acceptor se quence" ;
chromosome1 GeneDB intron 4822247 4822300 . - . intron SPAC20G4.04c ; db_xref "SPD:17/17A02" ; systematic_id "SPAC20G4.04c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4822295 4822300 . - . misc_feature unknown_3975 ; colour "6" ; note "gtatag, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4822314 4822328 . - . misc_feature unknown_3976 ; colour "6" ; note "ctaataaagaaacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 4822314 4822378 . - . intron SPAC20G4.04c ; db_xref "SPD:17/17A02" ; systematic_id "SPAC20G4.04c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4822373 4822378 . - . misc_feature unknown_3977 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4822488 4822501 . - . misc_feature unknown_3978 ; colour "6" ; note "ctaatcaaatttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 4822488 4822535 . - . intron SPAC20G4.04c ; db_xref "SPD:17/17A02" ; systematic_id "SPAC20G4.04c" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4822530 4822535 . - . misc_feature unknown_3979 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4822577 4822635 . - . mRNA SPAC20G4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4822906 4822942 . - . mRNA SPAC20G4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC20G4.05c" ; systematic_id "SPAC20G4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4822943 4824649 . - . mRNA SPAC20G4.05c ; db_xref "SPD:35/35D12" ; systematic_id "SPAC20G4.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL222W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC20G4.05c" ; product "UPF0061 family protein" ;
chromosome1 GeneDB CDS 4822943 4824649 . - . mRNA SPAC20G4.05c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4824648 4824831 . - . mRNA SPAC20G4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4825257 4825449 . - . mRNA SPAC20G4.06c ; Alias "adf1" ; ID "SPAC20G4.06c" ; db_xref "SPD:07/07B10" ; systematic_id "SPAC20G4.06c" ; primary_name "adf1" ; gene "adf1 ||| cof1 ||| SPAC20G4.06c" ; note "mRNA from AU010426" ;
chromosome1 GeneDB CDS_parts 4825450 4826077 . - . mRNA SPAC20G4.06c ; systematic_id "SPAC20G4.06c" ; colour "2" ; gene "adf1 ||| cof1 ||| SPAC20G4.06c" ; Alias "adf1" ; db_xref "SPD:07/07B10" ; synonym "cof1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cofilin/tropomyosin family; date=19700101 ||| term=orthologous to S. cerevisiae YLL050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Actin Depolymerizing Factor; cv=name_description; date=20091208 ||| term=name description, Cofilin; cv=name_description; date=20091208" ; GO "GO:0003779; actin binding
GO:0030042; actin filament depolymerization
GO:0030479; actin cortical patch
GO:0000915; cytokinesis, contractile ring formation
GO:0071519; actin filament bundle assembly involved in actomyosin contractile ring formation" ; primary_name "adf1" ; product "actin depolymerizing factor, cofilin" ;
chromosome1 GeneDB CDS 4825450 4825754 . - . mRNA SPAC20G4.06c ; colour "2" ;
chromosome1 GeneDB CDS 4825918 4826023 . - . mRNA SPAC20G4.06c ; colour "2" ;
chromosome1 GeneDB CDS 4826075 4826077 . - . mRNA SPAC20G4.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 4825755 4825773 . - . misc_feature unknown_3980 ; colour "6" ; note "ctaatttttttttgtttag, splice branch and acceptor sequ ence" ;
chromosome1 GeneDB intron 4825755 4825917 . - . intron SPAC20G4.06c ; Alias "adf1" ; db_xref "SPD:07/07B10" ; systematic_id "SPAC20G4.06c" ; primary_name "adf1" ; gene "adf1 ||| cof1 ||| SPAC20G4.06c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4825912 4825917 . - . misc_feature unknown_3981 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4826024 4826037 . - . misc_feature unknown_3982 ; colour "6" ; note "ttaacatacatattag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB intron 4826024 4826074 . - . intron SPAC20G4.06c ; Alias "adf1" ; db_xref "SPD:07/07B10" ; systematic_id "SPAC20G4.06c" ; primary_name "adf1" ; gene "adf1 ||| cof1 ||| SPAC20G4.06c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4826069 4826074 . - . misc_feature unknown_3983 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4826078 4826099 . - . mRNA SPAC20G4.06c ; Alias "adf1" ; ID "SPAC20G4.06c" ; systematic_id "SPAC20G4.06c" ; primary_name "adf1" ; gene "adf1 ||| cof1 ||| SPAC20G4.06c" ; note "mRNA from SPD939" ;
chromosome1 GeneDB CDS_parts 4826230 4826349 . + . mRNA SPAC20G4.09 ; db_xref "PMID:18488015" ; systematic_id "SPAC20G4.09" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "8" ; gene "SPAC20G4.09" ; product "sequence orphan" ; note "intron from Solexa transread data" ;
chromosome1 GeneDB CDS 4826230 4826297 . + . mRNA SPAC20G4.09 ; colour "8" ;
chromosome1 GeneDB CDS 4826343 4826349 . + . mRNA SPAC20G4.09 ; colour "8" ;
chromosome1 GeneDB CDS_parts 4826683 4828044 . - . mRNA SPAC20G4.07c ; systematic_id "SPAC20G4.07c" ; colour "2" ; gene "sts1 ||| SPAC20G4.07c ||| erg4" ; Alias "sts1" ; db_xref "SPD:44/44C10" ; synonym "erg4" ; GO "GO:0006696; ergosterol biosynthesis
GO:0042493; response to drug
GO:0006970; response to osmotic stress
GO:0005789; endoplasmic reticulum membrane
GO:0000246; delta24(24-1) sterol reductase activity
GO:0071473; cellular response to cation stress
GO:0006623; protein targeting to vacuole
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthesis
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane
GO:0030437; ascospore formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1320960; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sensitive to staurosporine; db_xref=PMID:1320960; cv=phenotype; date=20091123 ||| term=phenotype, sensitive to chloramphenicol; db_xref=PMID:1320960; cv=phenotype; date=20091123 ||| term=phenotype, sensitive to caffeine; db_xref=PMID:1320960; cv=phenotype; date=20091123 ||| term=phenotype, sensitive to sorbitol; db_xref=PMID:1320960; cv=phenotype; date=20091123 ||| term=phenotype, pleiotropic effects ; db_xref=PMID:1320960; cv=phenotype; date=20091123 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sporulation defects; db_xref=PMID:18310029; cv=phenotype; date=20091124" ; primary_name "sts1" ; product "C-24(28) sterol reductase Sts1" ; EC_number "1.3.1.71" ;
chromosome1 GeneDB CDS 4826683 4828044 . - . mRNA SPAC20G4.07c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4828045 4828141 . - . mRNA SPAC20G4.07c ; Alias "sts1" ; ID "SPAC20G4.07c" ; systematic_id "SPAC20G4.07c" ; primary_name "sts1" ; gene "sts1 ||| SPAC20G4.07c ||| erg4" ; note "mRNA from AU010943" ;
chromosome1 GeneDB 5'-UTR 4828905 4829056 . + . mRNA SPAC20G4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC20G4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4829057 4832370 . + . mRNA SPAC20G4.08 ; db_xref "SPD:48/48B11" ; systematic_id "SPAC20G4.08" ; synonym "SPAC4F10.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090811 ||| term=species distribution, conserved in Fungi only; date=20090811 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090811" ; colour "10" ; gene "SPAC20G4.08 ||| SPAC4F10.01" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 4829057 4831286 . + . mRNA SPAC20G4.08 ; colour "10" ;
chromosome1 GeneDB CDS 4831328 4831968 . + . mRNA SPAC20G4.08 ; colour "10" ;
chromosome1 GeneDB CDS 4832011 4832370 . + . mRNA SPAC20G4.08 ; colour "10" ;
chromosome1 GeneDB misc_feature 4830560 4830610 . + . misc_feature unknown_3984 ; note "nominal overlap with cosmid SPAC20G4 and cosmid SPAC4F10" ;
chromosome1 GeneDB misc_feature 4831287 4831292 . + . misc_feature unknown_3985 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4831312 4831327 . + . misc_feature unknown_3986 ; colour "6" ; note "ctaattttttaaacag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 4831969 4831974 . + . misc_feature unknown_3987 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4831997 4832010 . + . misc_feature unknown_3988 ; colour "6" ; note "ctaatttattctag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 4832371 4832473 . + . mRNA SPAC20G4.08 ; ID "SPAC20G4.08" ; db_xref "SPD:48/48B11" ; systematic_id "SPAC20G4.08" ; gene "SPAC20G4.08 ||| SPAC4F10.01" ; note "mRNA from AU010290" ;
chromosome1 GeneDB 5'-UTR 4832879 4832928 . + . mRNA SPAC4F10.02 ; ID "SPAC4F10.02" ; systematic_id "SPAC4F10.02" ; gene "SPAC4F10.02" ; note "mRNA from SPD276" ;
chromosome1 GeneDB CDS_parts 4832929 4834428 . + . mRNA SPAC4F10.02 ; systematic_id "SPAC4F10.02" ; colour "2" ; gene "SPAC4F10.02" ; db_xref "SPD:44/44G12" ; Alias "aap1" ; GO "GO:0005737; cytoplasm
GO:0004177; aminopeptidase activity
GO:0006508; proteolysis
GO:0061077; chaperone mediated protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR113W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=misc functional group, chaperone; db_xref=PMID:20044953; date=20100331" ; primary_name "aap1" ; product "aspartyl aminopeptidase Aap1" ; EC_number "3.4.11.-" ;
chromosome1 GeneDB CDS 4832929 4833160 . + . mRNA SPAC4F10.02 ; colour "2" ;
chromosome1 GeneDB CDS 4833257 4834428 . + . mRNA SPAC4F10.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 4833161 4833166 . + . misc_feature unknown_3989 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4833241 4833256 . + . misc_feature unknown_3990 ; colour "6" ; note "ttaacatttatgatag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB 3'-UTR 4834429 4834570 . + . mRNA SPAC4F10.02 ; ID "SPAC4F10.02" ; db_xref "SPD:44/44G12" ; systematic_id "SPAC4F10.02" ; gene "SPAC4F10.02" ; note "mRNA from SPD276" ;
chromosome1 GeneDB CDS_parts 4834870 4835945 . - . mRNA SPAC4F10.03c ; db_xref "SPD:16/16F04" ; systematic_id "SPAC4F10.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0008175; tRNA methyltransferase activity
GO:0030488; tRNA methylation
GO:0006412; translation" ; gene "SPAC4F10.03c" ; product "tRNA 2'-O-ribose methyltransferase (predicted)" ;
chromosome1 GeneDB CDS 4834870 4835703 . - . mRNA SPAC4F10.03c ; colour "7" ;
chromosome1 GeneDB CDS 4835922 4835945 . - . mRNA SPAC4F10.03c ; colour "7" ;
chromosome1 GeneDB misc_feature 4835704 4835723 . - . misc_feature unknown_3991 ; colour "6" ; note "ctaactttacacttttttag, splice branch and acceptor seq uence" ;
chromosome1 GeneDB misc_feature 4835916 4835921 . - . misc_feature unknown_3992 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4836218 4836394 . + . mRNA SPAC4F10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4836395 4837415 . + . mRNA SPAC4F10.04 ; db_xref "SPD:15/15C06" ; systematic_id "SPAC4F10.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL153W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008601; protein phosphatase type 2A regulator activity
GO:0006282; regulation of DNA repair
GO:0060236; regulation of mitotic spindle organization" ; gene "SPAC4F10.04" ; product "protein phosphatase type 2A, intrinsic regulator (predicted)" ;
chromosome1 GeneDB CDS 4836395 4837267 . + . mRNA SPAC4F10.04 ; colour "7" ;
chromosome1 GeneDB CDS 4837311 4837415 . + . mRNA SPAC4F10.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 4837268 4837273 . + . misc_feature unknown_3993 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4837296 4837310 . + . misc_feature unknown_3994 ; colour "6" ; note "ctaattactttcaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 4837416 4837430 . + . mRNA SPAC4F10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.04" ; systematic_id "SPAC4F10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4837650 4838309 . - . mRNA SPAC4F10.05c ; db_xref "SPD:07/07F03" ; systematic_id "SPAC4F10.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR239C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0009249; protein lipoylation
GO:0016874; ligase activity
GO:0005739; mitochondrion" ; gene "SPAC4F10.05c" ; product "mitochondrial lipoate-protein ligase (predicted)" ;
chromosome1 GeneDB CDS 4837650 4838309 . - . mRNA SPAC4F10.05c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4838308 4838311 . - . mRNA SPAC4F10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4838972 4839113 . + . mRNA SPAC4F10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4839114 4840280 . + . mRNA SPAC4F10.06 ; db_xref "SPD:18/18D11" ; systematic_id "SPAC4F10.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005634; nucleus
GO:0042274; ribosome small subunit biogenesis
GO:0030686; 90S preribosome" ; gene "SPAC4F10.06" ; product "ribosome small subunit biogenesis protein, BUD22 family (predicted)" ;
chromosome1 GeneDB CDS 4839114 4840280 . + . mRNA SPAC4F10.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4840281 4840287 . + . mRNA SPAC4F10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.06" ; systematic_id "SPAC4F10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4840677 4840845 . - . mRNA SPAC4F10.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.07c" ; systematic_id "SPAC4F10.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4840846 4843444 . - . mRNA SPAC4F10.07c ; systematic_id "SPAC4F10.07c" ; colour "2" ; db_xref "SPD:38/38E11" ; Alias "atg13" ; synonym "apg13 ||| mug78" ; GO "GO:0006914; autophagy
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032258; CVT pathway
GO:0000747; sexual reproduction
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR185W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; qualifier=predicted; date=20091125 ||| term=target of Tor1; qualifier=phosphorylated_by|predicted; date=20091125" ; primary_name "atg13" ; product "autophagy associated protein kinase regulatory subunit Atg13" ;
chromosome1 GeneDB CDS 4840846 4842891 . - . mRNA SPAC4F10.07c ; colour "2" ;
chromosome1 GeneDB CDS 4843136 4843231 . - . mRNA SPAC4F10.07c ; colour "2" ;
chromosome1 GeneDB CDS 4843310 4843444 . - . mRNA SPAC4F10.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 4842892 4842909 . - . misc_feature unknown_3995 ; colour "6" ; note "ttaattaacaaaatgtag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB misc_feature 4843130 4843135 . - . misc_feature unknown_3996 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4843232 4843248 . - . misc_feature unknown_3997 ; colour "6" ; note "ttaacatttacaaatag, splice branch and acceptor sequen ce" ;
chromosome1 GeneDB misc_feature 4843304 4843309 . - . misc_feature unknown_3998 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4843443 4843586 . - . mRNA SPAC4F10.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4844855 4846129 . + . mRNA SPAC4F10.08 ; systematic_id "SPAC4F10.08" ; colour "8" ; gene "SPAC4F10.08 ||| mug126" ; db_xref "SPD:20/20H03" ; Alias "mug126" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug126" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4844855 4845824 . + . mRNA SPAC4F10.08 ; colour "8" ;
chromosome1 GeneDB CDS 4845863 4846063 . + . mRNA SPAC4F10.08 ; colour "8" ;
chromosome1 GeneDB CDS 4846104 4846129 . + . mRNA SPAC4F10.08 ; colour "8" ;
chromosome1 GeneDB misc_feature 4845825 4845830 . + . misc_feature unknown_3999 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4845851 4845862 . + . misc_feature unknown_4000 ; colour "6" ; note "ctaattttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 4846672 4846796 . - . mRNA SPAC4F10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.09c" ; systematic_id "SPAC4F10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4846797 4849379 . - . mRNA SPAC4F10.09c ; db_xref "SPD:38/38E03" ; systematic_id "SPAC4F10.09c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0030690; Noc1p-Noc2p complex" ; gene "SPAC4F10.09c" ; product "ribosome biogenesis protein Noc1 (predicted)" ;
chromosome1 GeneDB CDS 4846797 4849379 . - . mRNA SPAC4F10.09c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4849378 4849530 . - . mRNA SPAC4F10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4849856 4850307 . - . mRNA SPAC4F10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.10c" ; systematic_id "SPAC4F10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4850308 4851321 . - . mRNA SPAC4F10.10c ; systematic_id "SPAC4F10.10c" ; colour "7" ; gene "mnn9 ||| SPAC4F10.10c" ; Alias "mnn9" ; db_xref "SPD:15/15A10" ; GO "GO:0000136; alpha-1,6-mannosyltransferase complex
GO:0006487; protein amino acid N-linked glycosylation
GO:0000137; Golgi cis cisterna
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL050C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mnn9" ; product "mannosyltransferase complex subunit, Anp family Mnn9 (predicted)" ;
chromosome1 GeneDB CDS 4850308 4851321 . - . mRNA SPAC4F10.10c ; colour "7" ;
chromosome1 GeneDB misc_feature 4850899 4850907 . - . misc_feature unknown_4001 ; note "DxD motif found in the active site of many glycosyltransferases (PMID 12235155)" ;
chromosome1 GeneDB 5'-UTR 4851320 4851781 . - . mRNA SPAC4F10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4853053 4853085 . + . mRNA SPAC4F10.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4853086 4854577 . + . mRNA SPAC4F10.11 ; systematic_id "SPAC4F10.11" ; colour "2" ; gene "spn1 ||| SPAC4F10.11" ; Alias "spn1" ; db_xref "SPD:33/33A11" ; GO "GO:0005525; GTP binding
GO:0005940; septin ring
GO:0031105; septin complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15385632; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; date=20100727 ||| term=orthologous to S. cerevisiae YLR314C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spn1" ; product "septin Spn1" ;
chromosome1 GeneDB CDS 4853086 4853265 . + . mRNA SPAC4F10.11 ; colour "2" ;
chromosome1 GeneDB CDS 4853303 4853899 . + . mRNA SPAC4F10.11 ; colour "2" ;
chromosome1 GeneDB CDS 4853945 4854577 . + . mRNA SPAC4F10.11 ; colour "2" ;
chromosome1 GeneDB misc_feature 4853266 4853271 . + . misc_feature unknown_4002 ; colour "6" ; note "gtaatc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4853292 4853302 . + . misc_feature unknown_4003 ; colour "6" ; note "ctaatatttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4853900 4853905 . + . misc_feature unknown_4004 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4853927 4853944 . + . misc_feature unknown_4005 ; colour "6" ; note "ctaatgaaaaaatgatag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB 3'-UTR 4854578 4855029 . + . mRNA SPAC4F10.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.11" ; systematic_id "SPAC4F10.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4855418 4855542 . + . mRNA SPAC4F10.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4855543 4856385 . + . mRNA SPAC4F10.12 ; systematic_id "SPAC4F10.12" ; colour "2" ; gene "fta1 ||| SPAC4F10.12 ||| sma1" ; Alias "fta1" ; db_xref "SPD:11/11A07" ; synonym "sma1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106 ||| term=species distribution, conserved in Fungi; date=20100723 ||| term=species distribution, conserved in Eukaryotes; date=20100723 ||| term=species distribution, conserved in Vertebrates; date=20100723 ||| term=species distribution, conserved in Metazoa; date=20100723 ||| term=species distribution, conserved in Eukaryotes only; date=20100723 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100723 ||| term=human CENPL ortholog; date=20100723 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; kinetochore" ; primary_name "fta1" ; product "CENP-L homolog Fta1" ;
chromosome1 GeneDB CDS 4855543 4856385 . + . mRNA SPAC4F10.12 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4856386 4856512 . + . mRNA SPAC4F10.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.12" ; systematic_id "SPAC4F10.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4856792 4856872 . - . mRNA SPAC4F10.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.13c" ; systematic_id "SPAC4F10.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4856873 4859968 . - . mRNA SPAC4F10.13c ; systematic_id "SPAC4F10.13c" ; colour "2" ; gene "mpd2 ||| SPAC4F10.13c" ; Alias "mpd2" ; db_xref "SPD:30/30A04" ; GO "GO:0005737; cytoplasm
GO:0006406; mRNA export from nucleus
GO:0006888; ER to Golgi vesicle mediated transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YBR172C and YPL105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mpd2" ; product "GYF domain protein" ;
chromosome1 GeneDB CDS 4856873 4859813 . - . mRNA SPAC4F10.13c ; colour "2" ;
chromosome1 GeneDB CDS 4859931 4859968 . - . mRNA SPAC4F10.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 4859814 4859834 . - . misc_feature unknown_4006 ; colour "6" ; note "ctaacaacttatgttttgtag, splice branch and acceptor se quence" ;
chromosome1 GeneDB misc_feature 4859925 4859930 . - . misc_feature unknown_4007 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4859967 4860032 . - . mRNA SPAC4F10.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4860585 4860618 . - . mRNA SPAC4F10.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.14c" ; systematic_id "SPAC4F10.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4860619 4861232 . - . mRNA SPAC4F10.14c ; systematic_id "SPAC4F10.14c" ; colour "2" ; gene "btf3 ||| SPAC4F10.14c ||| egd1 ||| nac2 ||| btt1" ; Alias "btf3" ; db_xref "SPD:31/31F10" ; synonym "egd1 ||| btt1 ||| nac2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR252W and YPL037C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17211518; date=20070807 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005854; nascent polypeptide-associated complex
GO:0042788; polysomal ribosome
GO:0051082; unfolded protein binding
GO:0051083; cotranslational protein folding
GO:0006613; cotranslational protein targeting to membrane" ; primary_name "btf3" ; product "nascent polypeptide-associated complex beta subunit" ;
chromosome1 GeneDB CDS 4860619 4861028 . - . mRNA SPAC4F10.14c ; colour "2" ;
chromosome1 GeneDB CDS 4861187 4861232 . - . mRNA SPAC4F10.14c ; colour "2" ;
chromosome1 GeneDB misc_feature 4861029 4861047 . - . misc_feature unknown_4008 ; colour "6" ; note "ttaacttatcattgatag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB intron 4861029 4861186 . - . intron SPAC4F10.14c ; Alias "btf3" ; db_xref "SPD:31/31F10" ; systematic_id "SPAC4F10.14c" ; primary_name "btf3" ; gene "btf3 ||| SPAC4F10.14c ||| egd1 ||| nac2 ||| btt1" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4861181 4861186 . - . misc_feature unknown_4009 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 4861530 4863448 . - . mRNA SPAC4F10.15c ; systematic_id "SPAC4F10.15c" ; colour "2" ; gene "wsp1 ||| SPAC4F10.15c" ; Alias "wsp1" ; db_xref "SPD:26/26G03" ; GO "GO:0030479; actin cortical patch
GO:0051286; cell tip
GO:0005826; contractile ring
GO:0005515; protein binding
GO:0000147; actin cortical patch assembly
GO:0000147; actin cortical patch assembly
GO:0045010; actin nucleation
GO:0045010; actin nucleation
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0030041; actin filament polymerization
GO:0000915; cytokinesis, contractile ring formation
GO:0000916; cytokinesis, contractile ring contraction
GO:0070314; G1 to G0 transition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Wiskott- Aldrich syndrome; date=19700101 ||| term=orthologous to S. cerevisiae YOR181W; date=19700101 ||| term=gene expression, promoter contains homolD box; cv=gene_ex; date=20070703 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human WAS ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "wsp1" ; product "WASp homolog" ;
chromosome1 GeneDB CDS 4861530 4861564 . - . mRNA SPAC4F10.15c ; colour "2" ;
chromosome1 GeneDB CDS 4861624 4861756 . - . mRNA SPAC4F10.15c ; colour "2" ;
chromosome1 GeneDB CDS 4861807 4863147 . - . mRNA SPAC4F10.15c ; colour "2" ;
chromosome1 GeneDB CDS 4863233 4863448 . - . mRNA SPAC4F10.15c ; colour "2" ;
chromosome1 GeneDB misc_feature 4861565 4861577 . - . misc_feature unknown_4010 ; colour "6" ; note "ctaattctttcag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4861618 4861623 . - . misc_feature unknown_4011 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4861757 4861770 . - . misc_feature unknown_4012 ; colour "6" ; note "ctaatattttccag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4861801 4861806 . - . misc_feature unknown_4013 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4863148 4863159 . - . misc_feature unknown_4014 ; colour "6" ; note "ctaacgttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4863227 4863232 . - . misc_feature unknown_4015 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4863447 4863502 . - . mRNA SPAC4F10.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4863887 4863960 . - . mRNA SPAC4F10.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.16c" ; systematic_id "SPAC4F10.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4863961 4868110 . - . mRNA SPAC4F10.16c ; db_xref "SPD:30/30F11" ; systematic_id "SPAC4F10.16c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER166W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005886; plasma membrane
GO:0004012; phospholipid-translocating ATPase activity
GO:0006897; endocytosis
GO:0006886; intracellular protein transport
GO:0045332; phospholipid translocation" ; gene "SPAC4F10.16c" ; product "P-type ATPase (predicted)" ; EC_number "3.6.3.1" ;
chromosome1 GeneDB CDS 4863961 4864537 . - . mRNA SPAC4F10.16c ; colour "7" ;
chromosome1 GeneDB CDS 4864584 4868110 . - . mRNA SPAC4F10.16c ; colour "7" ;
chromosome1 GeneDB misc_feature 4864538 4864554 . - . misc_feature unknown_4016 ; colour "6" ; note "ctaaatatttattttag, splice branch and acceptor sequen ce" ;
chromosome1 GeneDB misc_feature 4864578 4864583 . - . misc_feature unknown_4017 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4868109 4869933 . - . mRNA SPAC4F10.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4868588 4868959 . + . mRNA SPAC4F10.17 ; db_xref "SPD:02/02F02" ; systematic_id "SPAC4F10.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL109W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC4F10.17" ; product "conserved fungal protein" ; note "YOL109W tentative , reciprocal blast best hit, size and compositon agree" ;
chromosome1 GeneDB CDS 4868588 4868959 . + . mRNA SPAC4F10.17 ; colour "10" ;
chromosome1 GeneDB misc_RNA 4869147 4870212 . + . misc_RNA SPNCRNA.254 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.254" ; synonym "SPNG919" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 4870372 4870499 . + . mRNA SPAC4F10.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4870500 4871895 . + . mRNA SPAC4F10.18 ; systematic_id "SPAC4F10.18" ; colour "7" ; gene "SPAC4F10.18" ; Alias "nup37" ; db_xref "SPD:21/21F03" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human NUP37 ortholog; date=20100714" ; primary_name "nup37" ; product "WD repeat protein, nucleoporin Nup37 (predicted)" ;
chromosome1 GeneDB CDS 4870500 4870525 . + . mRNA SPAC4F10.18 ; colour "7" ;
chromosome1 GeneDB CDS 4870577 4870653 . + . mRNA SPAC4F10.18 ; colour "7" ;
chromosome1 GeneDB CDS 4870823 4871895 . + . mRNA SPAC4F10.18 ; colour "7" ;
chromosome1 GeneDB misc_feature 4870526 4870531 . + . misc_feature unknown_4018 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4870559 4870576 . + . misc_feature unknown_4019 ; colour "6" ; note "ctaacttctgtttattag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB misc_feature 4870654 4870659 . + . misc_feature unknown_4020 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4870802 4870822 . + . misc_feature unknown_4021 ; colour "6" ; note "ctaatgattaaccttatacag, splice branch and acceptor se quence" ;
chromosome1 GeneDB 3'-UTR 4871896 4871916 . + . mRNA SPAC4F10.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.18" ; systematic_id "SPAC4F10.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4871967 4872175 . - . mRNA SPAC4F10.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4F10.19c" ; systematic_id "SPAC4F10.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4872176 4872753 . - . mRNA SPAC4F10.19c ; db_xref "SPD:06/06C01" ; systematic_id "SPAC4F10.19c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-HIT; date=19700101 ||| term=orthologous to S. cerevisiae YJR055W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human ZNHIT3 ortholog; date=20091004" ; colour "10" ; gene "SPAC4F10.19c" ; product "zf-HIT protein Hit1 (predicted)" ;
chromosome1 GeneDB CDS 4872176 4872572 . - . mRNA SPAC4F10.19c ; colour "10" ;
chromosome1 GeneDB CDS 4872686 4872753 . - . mRNA SPAC4F10.19c ; colour "10" ;
chromosome1 GeneDB misc_feature 4872573 4872590 . - . misc_feature unknown_4022 ; colour "6" ; note "ctaatatagaattaatag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB misc_feature 4872680 4872685 . - . misc_feature unknown_4023 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4872752 4872959 . - . mRNA SPAC4F10.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4874225 4874268 . + . mRNA SPAC4F10.20 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4F10.20" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4874269 4874959 . + . mRNA SPAC4F10.20 ; systematic_id "SPAC4F10.20" ; colour "2" ; gene "grx1 ||| SPAC4F10.20" ; Alias "grx1" ; db_xref "SPD:08/08A07" ; GO "GO:0005829; cytosol
GO:0004602; glutathione peroxidase activity
GO:0004364; glutathione transferase activity
GO:0015035; protein disulfide oxidoreductase activity
GO:0034605; cellular response to heat
GO:0034599; cellular response to oxidative stress
GO:0033554; cellular response to stress
GO:0071294; cellular response to zinc ion
GO:0019430; removal of superoxide radicals" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL035C and YDR513W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=thioredoxin family; date=20081111" ; primary_name "grx1" ; product "glutaredoxin Grx1" ;
chromosome1 GeneDB CDS 4874269 4874289 . + . mRNA SPAC4F10.20 ; colour "2" ;
chromosome1 GeneDB CDS 4874384 4874436 . + . mRNA SPAC4F10.20 ; colour "2" ;
chromosome1 GeneDB CDS 4874605 4874702 . + . mRNA SPAC4F10.20 ; colour "2" ;
chromosome1 GeneDB CDS 4874826 4874959 . + . mRNA SPAC4F10.20 ; colour "2" ;
chromosome1 GeneDB misc_feature 4874290 4874295 . + . misc_feature unknown_4024 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 4874290 4874383 . + . intron SPAC4F10.20 ; Alias "grx1" ; db_xref "SPD:08/08A07" ; systematic_id "SPAC4F10.20" ; primary_name "grx1" ; gene "grx1 ||| SPAC4F10.20" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4874367 4874383 . + . misc_feature unknown_4025 ; colour "6" ; note "ctaacatttctgtatag, splice branch and acceptor sequen ce" ;
chromosome1 GeneDB misc_feature 4874437 4874442 . + . misc_feature unknown_4026 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 4874437 4874604 . + . intron SPAC4F10.20 ; Alias "grx1" ; db_xref "SPD:08/08A07" ; systematic_id "SPAC4F10.20" ; primary_name "grx1" ; gene "grx1 ||| SPAC4F10.20" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4874588 4874604 . + . misc_feature unknown_4027 ; colour "6" ; note "ttaactcttaattttag, splice branch and acceptor sequen ce" ;
chromosome1 GeneDB misc_feature 4874703 4874708 . + . misc_feature unknown_4028 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4874703 4874825 . + . intron SPAC4F10.20 ; Alias "grx1" ; db_xref "SPD:08/08A07" ; systematic_id "SPAC4F10.20" ; primary_name "grx1" ; gene "grx1 ||| SPAC4F10.20" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4874809 4874825 . + . misc_feature unknown_4029 ; colour "6" ; note "ctaacctccttgattag, splice branch and acceptor sequen ce" ;
chromosome1 GeneDB 5'-UTR 4875438 4875574 . + . mRNA SPAC19B12.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19B12.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4875575 4878028 . + . mRNA SPAC19B12.01 ; systematic_id "SPAC19B12.01" ; colour "10" ; gene "SPAC4F10.21 ||| SPAC19B12.01" ; Alias "SPAC4F10.21" ; db_xref "SPD:38/38D07" ; synonym "SPAC4F10.21" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL313C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TTC27 ortholog; date=20100301" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; primary_name "SPAC4F10.21" ; product "TPR repeat protein, TTC27 family" ;
chromosome1 GeneDB CDS 4875575 4878028 . + . mRNA SPAC19B12.01 ; colour "10" ;
chromosome1 GeneDB misc_feature 4876297 4876403 . + . misc_feature unknown_4030 ; note "nominal overlap with cosmid c4F10" ;
chromosome1 GeneDB 3'-UTR 4878029 4878120 . + . mRNA SPAC19B12.01 ; Alias "SPAC4F10.21" ; ID "SPAC19B12.01" ; db_xref "SPD:38/38D07" ; systematic_id "SPAC19B12.01" ; primary_name "SPAC4F10.21" ; gene "SPAC4F10.21 ||| SPAC19B12.01" ; note "mRNA from AU012438" ;
chromosome1 GeneDB CDS_parts 4878241 4878453 . + . mRNA SPAC4F10.22 ; Alias "cmc4" ; systematic_id "SPAC4F10.22" ; synonym "tam2" ; colour "10" ; GO "GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=conserved in Eukaryotes; date=20090720 ||| term=conserved in Eukaryotes only; date=20090720 ||| term=conserved in Vertebrates; date=20090720 ||| term=conserved in Metazoa; date=20090720 ||| term=conserved in Fungi; date=20090720 ||| term=similar to S. cerevisiae YMR194C-B; date=20090720 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; gene "SPAC4F10.22" ; primary_name "cmc4" ; product "mitochondrial intermembrane space protein involved in respiratory growth" ;
chromosome1 GeneDB CDS 4878241 4878453 . + . mRNA SPAC4F10.22 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 4878454 4878604 . + . mRNA SPAC15A10.17 ; db_xref "PMID:21270388" ; systematic_id "SPAC15A10.17" ;
chromosome1 GeneDB 3'-UTR 4878579 4878824 . - . mRNA SPAC19B12.02c ; ID "SPAC19B12.02c" ; db_xref "SPD:45/45D12" ; systematic_id "SPAC19B12.02c" ; gene "SPAC19B12.02c ||| gas1" ; note "mRNA from AU010793" ;
chromosome1 GeneDB CDS_parts 4878825 4880453 . - . mRNA SPAC19B12.02c ; systematic_id "SPAC19B12.02c" ; colour "2" ; gene "SPAC19B12.02c ||| gas1" ; Alias "gas1" ; db_xref "SPD:45/45D12" ; GO "GO:0009277; fungal-type cell wall
GO:0009897; external side of plasma membrane
GO:0005886; plasma membrane
GO:0042124; 1,3-beta-glucanosyltransferase activity
GO:0071852; fungal-type cell wall organization or biogenesis
GO:0071966; fungal-type cell wall polysaccharide biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR307W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; evidence=IDA; db_xref=PMID:17230583; date=20090615" ; primary_name "gas1" ; product "cell wall protein Gas1, 1,3-beta- glucanosyltransferase (predicted)" ;
chromosome1 GeneDB CDS 4878825 4880453 . - . mRNA SPAC19B12.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4880452 4880716 . - . mRNA SPAC19B12.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19B12.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4880454 4883997 . - . misc_feature unknown_4031 ; note "gene free region. possible G-C/G+C stand switCh" ;
chromosome1 GeneDB misc_RNA 4881385 4881949 . + . misc_RNA SPNCRNA.255 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.255" ; synonym "SPNG920" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 4882968 4883997 . + . mRNA SPAC19B12.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19B12.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4883998 4889478 . + . mRNA SPAC19B12.03 ; systematic_id "SPAC19B12.03" ; colour "2" ; gene "bgs3 ||| SPAC19B12.03" ; Alias "bgs3" ; db_xref "SPD:48/48H06" ; GO "GO:0000148; 1,3-beta-glucan synthase complex
GO:0030427; site of polarized growth
GO:0003843; beta-glucan synthase activity
GO:0051274; beta-glucan biosynthetic process
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0009826; unidimensional cell growth
GO:0032878; regulation of establishment or maintenance of cell polarity
GO: SF polarity, and remove parent; regulation of establishment or maintenance of cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061117 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12582133; date=20061117 ||| term=orthologous to S. cerevisiae YLR342W and YGR032W and YMR306W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "bgs3" ; product "1,3-beta-glucan synthase subunit Bgs3" ; EC_number "2.4.1.34" ;
chromosome1 GeneDB CDS 4883998 4889478 . + . mRNA SPAC19B12.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4889479 4889845 . + . mRNA SPAC19B12.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19B12.03" ; systematic_id "SPAC19B12.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4890335 4890572 . + . mRNA SPAC19B12.04 ; systematic_id "SPAC19B12.04" ; colour "7" ; gene "rps3001 ||| rps30-1 ||| SPAC19B12.04" ; Alias "rps3001" ; db_xref "SPD:01/01B04" ; synonym "rps30-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR287C-A and YOR182C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rps3001" ; product "40S ribosomal protein S30 (predicted)" ;
chromosome1 GeneDB CDS 4890335 4890373 . + . mRNA SPAC19B12.04 ; colour "7" ;
chromosome1 GeneDB CDS 4890426 4890572 . + . mRNA SPAC19B12.04 ; colour "7" ;
chromosome1 GeneDB misc_feature 4890374 4890379 . + . misc_feature unknown_4032 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 4890374 4890425 . + . intron SPAC19B12.04 ; Alias "rps3001" ; db_xref "SPD:01/01B04" ; systematic_id "SPAC19B12.04" ; primary_name "rps3001" ; gene "rps3001 ||| rps30-1 ||| SPAC19B12.04" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4890412 4890425 . + . misc_feature unknown_4033 ; colour "6" ; note "ctaactgtttaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4890573 4890778 . + . mRNA SPAC19B12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19B12.04" ; systematic_id "SPAC19B12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4890998 4891042 . - . mRNA SPAC19B12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19B12.05c" ; systematic_id "SPAC19B12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4891043 4893505 . - . mRNA SPAC19B12.05c ; systematic_id "SPAC19B12.05c" ; colour "2" ; gene "fcp1 ||| SPAC19B12.05c" ; Alias "fcp1" ; db_xref "SPD:38/38D09" ; GO "GO:0005515; protein binding
GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0005634; nucleus
GO:0043623; cellular protein complex assembly
GO:0071775; regulation of cell cycle cytokinesis
GO:0070317; negative regulation of G1 to G0 transition
GO:0006357; regulation of trancription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YMR277W; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=target is Rpb4; db_xref=PMID:11934898; date=19700101 ||| term=catalytic activity, active site mapping; db_xref=PMID:12556522; cv=cat_act; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cytokinesis defects; cv=phenotype; db_xref=PMID:17502918; date=20100222 ||| term=warning, gene structure updated; date=20030422" ; primary_name "fcp1" ; product "CTD phosphatase Fcp1" ; EC_number "3.1.3.3" ;
chromosome1 GeneDB CDS 4891043 4891292 . - . mRNA SPAC19B12.05c ; colour "2" ;
chromosome1 GeneDB CDS 4891365 4891669 . - . mRNA SPAC19B12.05c ; colour "2" ;
chromosome1 GeneDB CDS 4891714 4892892 . - . mRNA SPAC19B12.05c ; colour "2" ;
chromosome1 GeneDB CDS 4892966 4893050 . - . mRNA SPAC19B12.05c ; colour "2" ;
chromosome1 GeneDB CDS 4893098 4893184 . - . mRNA SPAC19B12.05c ; colour "2" ;
chromosome1 GeneDB CDS 4893240 4893505 . - . mRNA SPAC19B12.05c ; colour "2" ;
chromosome1 GeneDB misc_feature 4891293 4891307 . - . misc_feature unknown_4034 ; colour "6" ; note "ctaacgcctttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4891359 4891364 . - . misc_feature unknown_4035 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4891670 4891681 . - . misc_feature unknown_4036 ; colour "6" ; note "ctaacaatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4891708 4891713 . - . misc_feature unknown_4037 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4892893 4892908 . - . misc_feature unknown_4038 ; colour "6" ; note "ttaacattatttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4892960 4892965 . - . misc_feature unknown_4039 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4893051 4893067 . - . misc_feature unknown_4040 ; colour "6" ; note "ctaattgtttattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4893092 4893097 . - . misc_feature unknown_4041 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4893185 4893212 . - . misc_feature unknown_4042 ; colour "6" ; note "ttaactgagacatatttattttttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4893234 4893239 . - . misc_feature unknown_4043 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4893504 4893636 . - . mRNA SPAC19B12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19B12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4894026 4894098 . - . mRNA SPAC19B12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19B12.06c" ; systematic_id "SPAC19B12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4894099 4895073 . - . mRNA SPAC19B12.06c ; systematic_id "SPAC19B12.06c" ; colour "10" ; gene "SPAC19B12.06c" ; note "22.04.2003 added exon 18153..18218" ; db_xref "SPD:13/13H12" ; GO "GO:0005794; Golgi apparatus
; COPI-coated vesicle
GO:0004252; serine-type endopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL246C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; product "rhomboid family protease" ;
chromosome1 GeneDB CDS 4894099 4894405 . - . mRNA SPAC19B12.06c ; colour "10" ;
chromosome1 GeneDB CDS 4894449 4894514 . - . mRNA SPAC19B12.06c ; colour "10" ;
chromosome1 GeneDB CDS 4894620 4894836 . - . mRNA SPAC19B12.06c ; colour "10" ;
chromosome1 GeneDB CDS 4894887 4895073 . - . mRNA SPAC19B12.06c ; colour "10" ;
chromosome1 GeneDB misc_feature 4894406 4894420 . - . misc_feature unknown_4044 ; colour "6" ; note "ttaacaatattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4894614 4894619 . - . misc_feature unknown_4045 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4894837 4894852 . - . misc_feature unknown_4046 ; colour "6" ; note "ctgacaaagtacgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4894881 4894886 . - . misc_feature unknown_4047 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4895072 4895179 . - . mRNA SPAC19B12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19B12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4895775 4896843 . - . mRNA SPAC19B12.07c ; db_xref "SPD:16/16D12" ; systematic_id "SPAC19B12.07c" ; GO "GO:0006355; regulation of transcription DNA- dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human ZNF277 ortholog; date=20091004" ; colour "10" ; gene "SPAC19B12.07c" ; product "human ZNF277 ortholog" ;
chromosome1 GeneDB CDS 4895775 4896084 . - . mRNA SPAC19B12.07c ; colour "10" ;
chromosome1 GeneDB CDS 4896125 4896340 . - . mRNA SPAC19B12.07c ; colour "10" ;
chromosome1 GeneDB CDS 4896410 4896843 . - . mRNA SPAC19B12.07c ; colour "10" ;
chromosome1 GeneDB misc_feature 4896085 4896098 . - . misc_feature unknown_4048 ; colour "6" ; note "ttaacattttacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4896119 4896124 . - . misc_feature unknown_4049 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4896341 4896358 . - . misc_feature unknown_4050 ; colour "6" ; note "ctaacatcgtttgataag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4896404 4896409 . - . misc_feature unknown_4051 ; colour "6" ; note "gtaatc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4896842 4896994 . - . mRNA SPAC19B12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19B12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 4897509 4897866 . - . LTR unknown_4052 ; note "1664 (-1) 1 358 Tf1-type LTR" ;
chromosome1 GeneDB 5'-UTR 4898041 4898140 . + . mRNA SPAC19B12.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19B12.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4898141 4899286 . + . mRNA SPAC19B12.08 ; systematic_id "SPAC19B12.08" ; colour "2" ; gene "atg4 ||| SPAC19B12.08" ; Alias "atg4" ; db_xref "SPD:18/18B02" ; GO "GO:0005829; cytosol
GO:0004197; cysteine-type endopeptidase activity
GO:0051697; C-terminal protein delipidation
GO:0000045; autophagic vacuole formation
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032258; CVT pathway
GO:0051605; protein maturation by peptide bond cleavage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL223W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atg4" ; product "Atg8 deconjugator Atg4 (predicted)" ;
chromosome1 GeneDB CDS 4898141 4898565 . + . mRNA SPAC19B12.08 ; colour "2" ;
chromosome1 GeneDB CDS 4898749 4899286 . + . mRNA SPAC19B12.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 4898566 4898571 . + . misc_feature unknown_4053 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4898732 4898748 . + . misc_feature unknown_4054 ; colour "6" ; note "ctaactttttgttaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4899287 4899856 . + . mRNA SPAC19B12.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19B12.08" ; systematic_id "SPAC19B12.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4900517 4900564 . + . mRNA SPAC19B12.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19B12.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4900565 4900977 . + . mRNA SPAC19B12.09 ; systematic_id "SPAC19B12.09" ; colour "2" ; gene "srp14 ||| SPAC19B12.09" ; Alias "srp14" ; db_xref "SPD:03/03C03" ; GO "GO:0005786; signal recognition particle (sensu Eukaryota)
GO:0006617; SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
GO:0030942; endoplasmic reticulum signal peptide binding" ; controlled_curation "term=orthologous to S. cerevisiae YDL092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=experimental tools, structure; db_xref=PMID:19390147; cv=ex_tools; date=20090426 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:19390147; date=20090426" ; primary_name "srp14" ; product "signal recognition particle subunit Srp14" ;
chromosome1 GeneDB CDS 4900565 4900585 . + . mRNA SPAC19B12.09 ; colour "2" ;
chromosome1 GeneDB CDS 4900634 4900712 . + . mRNA SPAC19B12.09 ; colour "2" ;
chromosome1 GeneDB CDS 4900757 4900977 . + . mRNA SPAC19B12.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 4900586 4900591 . + . misc_feature unknown_4055 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 4900586 4900633 . + . intron SPAC19B12.09 ; Alias "srp14" ; db_xref "SPD:03/03C03" ; systematic_id "SPAC19B12.09" ; primary_name "srp14" ; gene "srp14 ||| SPAC19B12.09" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4900622 4900633 . + . misc_feature unknown_4056 ; colour "6" ; note "ttaattaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4900713 4900718 . + . misc_feature unknown_4057 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 4900713 4900756 . + . intron SPAC19B12.09 ; Alias "srp14" ; db_xref "SPD:03/03C03" ; systematic_id "SPAC19B12.09" ; primary_name "srp14" ; gene "srp14 ||| SPAC19B12.09" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4900745 4900756 . + . misc_feature unknown_4058 ; colour "6" ; note "ctaatttaaaag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 4901619 4901670 . + . mRNA SPAC19B12.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19B12.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4901671 4903217 . + . mRNA SPAC19B12.10 ; systematic_id "SPAC19B12.10" ; colour "2" ; gene "sst2 ||| SPAC19B12.10" ; Alias "sst2" ; db_xref "SPD:25/25A12" ; GO "GO:0032153; cell division site
GO:0005768; endosome
GO:0030133; transport vesicle
GO:0004221; ubiquitin thioesterase activity
GO:0004843; ubiquitin-specific protease activity
GO:0045324; late endosome to vacuole transport
GO:0016579; protein deubiquitination
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, AMSH; date=20070110 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human STAMBP ortholog; date=20101001" ; primary_name "sst2" ; product "human AMSH/STAMBP protein homolog, ubiquitin specific-protease" ;
chromosome1 GeneDB CDS 4901671 4901802 . + . mRNA SPAC19B12.10 ; colour "2" ;
chromosome1 GeneDB CDS 4901867 4902001 . + . mRNA SPAC19B12.10 ; colour "2" ;
chromosome1 GeneDB CDS 4902133 4903001 . + . mRNA SPAC19B12.10 ; colour "2" ;
chromosome1 GeneDB CDS 4903046 4903217 . + . mRNA SPAC19B12.10 ; colour "2" ;
chromosome1 GeneDB misc_feature 4901803 4901808 . + . misc_feature unknown_4059 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4901847 4901866 . + . misc_feature unknown_4060 ; colour "6" ; note "ctaacgcttttataaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4902002 4902007 . + . misc_feature unknown_4061 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4902118 4902132 . + . misc_feature unknown_4062 ; colour "6" ; note "ctaacaatgtaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4903002 4903007 . + . misc_feature unknown_4063 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4903032 4903045 . + . misc_feature unknown_4064 ; colour "6" ; note "ttaacgacttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4903218 4904256 . + . mRNA SPAC19B12.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19B12.10" ; systematic_id "SPAC19B12.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4903485 4903742 . - . mRNA SPAC19B12.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19B12.11c" ; systematic_id "SPAC19B12.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4903743 4904176 . - . mRNA SPAC19B12.11c ; db_xref "SPD:03/03F06" ; systematic_id "SPAC19B12.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YLR074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human ZNF593 ortholog; date=20090927" ; colour "10" ; GO "GO:0005634; nucleus" ; gene "SPAC19B12.11c" ; product "zinc finger protein, human ZNF593 ortholog" ;
chromosome1 GeneDB CDS 4903743 4904040 . - . mRNA SPAC19B12.11c ; colour "10" ;
chromosome1 GeneDB CDS 4904100 4904176 . - . mRNA SPAC19B12.11c ; colour "10" ;
chromosome1 GeneDB misc_feature 4904041 4904059 . - . misc_feature unknown_4065 ; colour "6" ; note "ttaacaattggacaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4904094 4904099 . - . misc_feature unknown_4066 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4904175 4904197 . - . mRNA SPAC19B12.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19B12.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4905508 4906394 . - . mRNA SPAC19B12.12c ; systematic_id "SPAC19B12.12c" ; colour "2" ; gene "yip11 ||| yip1 ||| yip1-a ||| SPAC19B12.12c" ; Alias "yip11" ; db_xref "SPD:12/12A03" ; synonym "yip1 ||| yip1-a" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SMN family; date=19700101 ||| term=disease associated, motor neurone disease; date=19700101 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000387; spliceosomal snRNP assembly
GO:0005681; spliceosomal complex" ; primary_name "yip11" ; product "SMN family protein Yip11" ;
chromosome1 GeneDB CDS 4905508 4905699 . - . mRNA SPAC19B12.12c ; colour "2" ;
chromosome1 GeneDB CDS 4905774 4906122 . - . mRNA SPAC19B12.12c ; colour "2" ;
chromosome1 GeneDB CDS 4906228 4906394 . - . mRNA SPAC19B12.12c ; colour "2" ;
chromosome1 GeneDB misc_feature 4905700 4905714 . - . misc_feature unknown_4067 ; colour "6" ; note "ctaacatttttctag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4905700 4905773 . - . intron SPAC19B12.12c ; Alias "yip11" ; db_xref "SPD:12/12A03" ; systematic_id "SPAC19B12.12c" ; primary_name "yip11" ; gene "yip11 ||| yip1 ||| yip1-a ||| SPAC19B12.12c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4905768 4905773 . - . misc_feature unknown_4068 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4906123 4906135 . - . misc_feature unknown_4069 ; colour "6" ; note "ctgacaagttcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4906123 4906227 . - . intron SPAC19B12.12c ; Alias "yip11" ; db_xref "SPD:12/12A03" ; systematic_id "SPAC19B12.12c" ; primary_name "yip11" ; gene "yip11 ||| yip1 ||| yip1-a ||| SPAC19B12.12c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4906222 4906227 . - . misc_feature unknown_4070 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4906898 4906977 . + . mRNA SPAC19B12.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19B12.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4906978 4909239 . + . mRNA SPAC19B12.13 ; systematic_id "SPAC19B12.13" ; colour "7" ; gene "cox1102 ||| cox11-b ||| cox11 ||| SPAPB8E5.01 ||| SPAC19B12.13" ; Alias "cox1102" ; obsolete_name "cox11" ; synonym "cox11 ||| cox11-b ||| SPAPB8E5.01" ; GO "GO:0031304; intrinsic to mitochondrial inner membrane
GO:0005759; mitochondrial matrix
GO:0005763; mitochondrial small ribosomal subunit
GO:0005507; copper ion binding
GO:0008168; methyltransferase activity
GO:0008535; cytochrome c oxidase complex assembly
GO:0032543; mitochondrial translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, proteolytic cleavage; evidence=ISS; cv=pt_mod; date=20060825 ||| term=genome organization, tandem fusion protein; cv=genome_org; evidence=ISS; date=20060825 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; evidence=ISS; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; evidence=ISS; date=20060825 ||| term=target of TIM23 translocase; evidence=ISS; date=20060825 ||| term=orthologous to S. cerevisiae YPL132W (C-term); date=19700101 ||| term=orthologous to S. cerevisiae YKL155C (N-term); date=19700101" ; primary_name "cox1102" ; product "fusion cytochrome c oxidase assembly protein Cox1102, mitochondrial ribosomal protein Rsm2202 (predicted)" ;
chromosome1 GeneDB CDS 4906978 4909239 . + . mRNA SPAC19B12.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 4907040 4907154 . + . misc_feature unknown_4071 ; note "nominal overlap with cosmid c19B12" ;
chromosome1 GeneDB 3'-UTR 4909240 4909314 . + . mRNA SPAC19B12.13 ; Alias "cox1102" ; ID "SPAC19B12.13" ; systematic_id "SPAC19B12.13" ; primary_name "cox1102" ; gene "cox1102 ||| cox11-b ||| cox11 ||| SPAPB8E5.01 ||| SPAC19B12.13" ; note "mRNA from AU007158" ;
chromosome1 GeneDB 3'-UTR 4909426 4909496 . - . mRNA SPAPB8E5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB8E5.02c" ; systematic_id "SPAPB8E5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4909497 4910875 . - . mRNA SPAPB8E5.02c ; systematic_id "SPAPB8E5.02c" ; colour "2" ; gene "rpn502 ||| rpn5-b ||| SPAPB8E5.02c ||| rpn5" ; note "expression level is tightly controlled so that deletion of either copy is compensated (PMID 12783882)" ; Alias "rpn502" ; synonym "rpn5 ||| rpn5-b" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL147W; date=19700101 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; nuclear periphery
GO:0000502; proteasome complex (sensu Eukaryota)
GO:0005515; protein binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0043248; proteasome assembly
GO:0031144; proteasome localization
GO:0000278; mitotic cell cycle" ; primary_name "rpn502" ; product "19S proteasome regulatory subunit Rpn502" ;
chromosome1 GeneDB CDS 4909497 4910744 . - . mRNA SPAPB8E5.02c ; colour "2" ;
chromosome1 GeneDB CDS 4910792 4910875 . - . mRNA SPAPB8E5.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 4910745 4910761 . - . misc_feature unknown_4072 ; colour "6" ; note "ctaacttgtaattgtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 4910745 4910791 . - . intron SPAPB8E5.02c ; Alias "rpn502" ; systematic_id "SPAPB8E5.02c" ; primary_name "rpn502" ; gene "rpn502 ||| rpn5-b ||| SPAPB8E5.02c ||| rpn5" ; note "confirmed" ;
chromosome1 GeneDB misc_feature 4910786 4910791 . - . misc_feature unknown_4073 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4910874 4910910 . - . mRNA SPAPB8E5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB8E5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 4910978 4911115 . + . LTR unknown_4074 ; note "fragment Tf1-type LTR" ;
chromosome1 GeneDB repeat_region 4911432 4911466 . + . repeat_region unknown_4075 ; note "polyT 35" ;
chromosome1 GeneDB 5'-UTR 4911584 4912296 . + . mRNA SPAPB8E5.03 ; Alias "mae1" ; ID "SPAPB8E5.03" ; db_xref "PMID:18488015" ; systematic_id "SPAPB8E5.03" ; primary_name "mae1" ; gene "mae1 ||| SPAPB8E5.03" ; note "From Solexa transcript SPNG926-27" ;
chromosome1 GeneDB repeat_region 4911879 4912274 . + . repeat_region unknown_4076 ; note "duplicated region in cosmid c212" ;
chromosome1 GeneDB 5'-UTR 4912237 4912296 . + . mRNA SPAPB8E5.03 ; Alias "mae1" ; ID "SPAPB8E5.03" ; systematic_id "SPAPB8E5.03" ; primary_name "mae1" ; gene "mae1 ||| SPAPB8E5.03" ; note "mRNA from spc05958" ;
chromosome1 GeneDB CDS_parts 4912297 4913613 . + . mRNA SPAPB8E5.03 ; Alias "mae1" ; systematic_id "SPAPB8E5.03" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0071423; malate transmembrane transport
GO:0071422; succinate transmembrane transport
GO:0015140; malate transmembrane transporter activity
GO:0015141; succinate transmembrane transporter activity" ; gene "mae1 ||| SPAPB8E5.03" ; primary_name "mae1" ; product "malic acid transport protein Mae1" ;
chromosome1 GeneDB CDS 4912297 4913613 . + . mRNA SPAPB8E5.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4913614 4913877 . + . mRNA SPAPB8E5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB8E5.03" ; systematic_id "SPAPB8E5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4914318 4914463 . - . mRNA SPAPB8E5.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB8E5.04c" ; systematic_id "SPAPB8E5.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4914464 4915030 . - . mRNA SPAPB8E5.04c ; systematic_id "SPAPB8E5.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL046W; date=19700101 ||| term=disease associated, Niemann- Pick disease; date=20071202 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000328; lumen of vacuole with cell cycle- correlated morphology
GO:0032366; intracellular sterol transport" ; colour "7" ; gene "SPAPB8E5.04c" ; product "Niemann-Pick disease type C2 protein hE1 homolog (predicted)" ;
chromosome1 GeneDB CDS 4914464 4915030 . - . mRNA SPAPB8E5.04c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4915029 4915420 . - . mRNA SPAPB8E5.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB8E5.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4917099 4917298 . + . mRNA SPAPB8E5.05 ; Alias "mfm1" ; systematic_id "SPAPB8E5.05" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed in M- type mating cells; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, M-factor precursor; cv=name_description; date=20090729 ||| term=gene expression, transcriptionally induced by Mat1-Mc; db_xref=PMID:9233811; cv=gene_ex; date=20100304" ; GO "GO:0000772; mating pheromone activity" ; gene "mfm1 ||| SPAPB8E5.05" ; primary_name "mfm1" ; product "M-factor precursor Mfm1" ;
chromosome1 GeneDB CDS 4917099 4917214 . + . mRNA SPAPB8E5.05 ; colour "2" ;
chromosome1 GeneDB CDS 4917286 4917298 . + . mRNA SPAPB8E5.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 4917215 4917220 . + . misc_feature unknown_4077 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4917215 4917285 . + . intron SPAPB8E5.05 ; Alias "mfm1" ; systematic_id "SPAPB8E5.05" ; primary_name "mfm1" ; gene "mfm1 ||| SPAPB8E5.05" ;
chromosome1 GeneDB misc_feature 4917267 4917285 . + . misc_feature unknown_4078 ; colour "6" ; note "ctaaccgatttcattttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4917555 4917824 . - . mRNA SPAPB8E5.06c ; Alias "rpl302" ; ID "SPAPB8E5.06c" ; systematic_id "SPAPB8E5.06c" ; primary_name "rpl302" ; gene "rpl302 ||| rpl3-2 ||| rpl3-b ||| SPAPB8E5.06c" ; note "mRNA from AU011690" ;
chromosome1 GeneDB CDS_parts 4917825 4918991 . - . mRNA SPAPB8E5.06c ; systematic_id "SPAPB8E5.06c" ; colour "2" ; gene "rpl302 ||| rpl3-2 ||| rpl3-b ||| SPAPB8E5.06c" ; Alias "rpl302" ; synonym "rpl3-2 ||| rpl3-b" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl302" ; product "60S ribosomal protein L3" ;
chromosome1 GeneDB CDS 4917825 4918991 . - . mRNA SPAPB8E5.06c ; colour "2" ;
chromosome1 GeneDB LTR 4919147 4919506 . + . LTR unknown_4079 ; note "725 (+1) 2 358 Tf1-type LTR" ;
chromosome1 GeneDB 3'-UTR 4919710 4919838 . - . mRNA SPAPB8E5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB8E5.07c" ; systematic_id "SPAPB8E5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4919839 4923330 . - . mRNA SPAPB8E5.07c ; systematic_id "SPAPB8E5.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YPL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0000054; ribosome export from nucleus
GO:0005634; nucleus" ; gene "SPAPB8E5.07c" ; product "ribosome biogenesis protein Rrp12 (predicted)" ;
chromosome1 GeneDB CDS 4919839 4923330 . - . mRNA SPAPB8E5.07c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4923329 4923339 . - . mRNA SPAPB8E5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPB8E5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4923580 4923891 . + . mRNA SPAPB8E5.08 ; systematic_id "SPAPB8E5.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "6" ; gene "SPAPB8E5.08" ; product "dubious" ; note "unusual nucleotide composition ||| localization signal likley to be artefact" ;
chromosome1 GeneDB CDS 4923580 4923891 . + . mRNA SPAPB8E5.08 ; colour "6" ;
chromosome1 GeneDB 5'-UTR 4924227 4924263 . + . mRNA SPAPB8E5.09 ; ID "SPAPB8E5.09" ; systematic_id "SPAPB8E5.09" ; gene "SPAPB8E5.09 ||| rvb1" ; note "mRNA from AU007136" ;
chromosome1 GeneDB CDS_parts 4924264 4925687 . + . mRNA SPAPB8E5.09 ; Alias "rvb1" ; systematic_id "SPAPB8E5.09" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDR190C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230" ; GO "GO:0031011; Ino80 complex
GO:0000812; Swr1 complex
GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange" ; gene "SPAPB8E5.09 ||| rvb1" ; primary_name "rvb1" ; product "AAA family ATPase Rvb1" ;
chromosome1 GeneDB CDS 4924264 4924407 . + . mRNA SPAPB8E5.09 ; colour "2" ;
chromosome1 GeneDB CDS 4924461 4925687 . + . mRNA SPAPB8E5.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 4924408 4924413 . + . misc_feature unknown_4080 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB intron 4924408 4924460 . + . intron SPAPB8E5.09 ; systematic_id "SPAPB8E5.09" ; gene "SPAPB8E5.09 ||| rvb1" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4924444 4924460 . + . misc_feature unknown_4081 ; colour "6" ; note "ctaatatattttcttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4925688 4925757 . + . mRNA SPAPB8E5.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPB8E5.09" ; systematic_id "SPAPB8E5.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4926538 4926872 . + . mRNA SPAPB8E5.10 ; systematic_id "SPAPB8E5.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=similar to N. crassa B24N11.210; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090303" ; colour "10" ; GO "GO:0007126; meiosis" ; gene "SPAPB8E5.10" ; product "conserved fungal protein, with meiosis specific splicing" ; note "candidate ortholog S. cerevisiae YJL062W-A" ;
chromosome1 GeneDB CDS 4926538 4926610 . + . mRNA SPAPB8E5.10 ; colour "10" ;
chromosome1 GeneDB CDS 4926659 4926729 . + . mRNA SPAPB8E5.10 ; colour "10" ;
chromosome1 GeneDB CDS 4926795 4926872 . + . mRNA SPAPB8E5.10 ; colour "10" ;
chromosome1 GeneDB misc_feature 4926611 4926616 . + . misc_feature unknown_4082 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome1 GeneDB intron 4926611 4926658 . + . intron SPAPB8E5.10 ; systematic_id "SPAPB8E5.10" ; gene "SPAPB8E5.10" ;
chromosome1 GeneDB misc_feature 4926645 4926658 . + . misc_feature unknown_4083 ; colour "6" ; note "ctaacgaattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4926721 4926827 . + . misc_feature unknown_4084 ; note "nominal overlap with SPAC1B3 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 4926730 4926735 . + . misc_feature unknown_4085 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 4926730 4926794 . + . intron SPAPB8E5.10 ; systematic_id "SPAPB8E5.10" ; gene "SPAPB8E5.10" ;
chromosome1 GeneDB 3'-UTR 4926751 4926945 . - . mRNA SPAC1B3.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.01c" ; systematic_id "SPAC1B3.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4926778 4926794 . + . misc_feature unknown_4086 ; colour "6" ; note "ctgacctatatttacag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 4926946 4927918 . - . mRNA SPAC1B3.01c ; db_xref "SPD:13/13H08" ; systematic_id "SPAC1B3.01c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0008655; pyrimidine salvage
GO:0004845; uracil phosphoribosyltransferase activity
GO:0006223; uracil salvage" ; gene "SPAC1B3.01c" ; product "uracil phosphoribosyltransferase (predicted)" ; EC_number "2.4.2.9" ;
chromosome1 GeneDB CDS 4926946 4927003 . - . mRNA SPAC1B3.01c ; colour "7" ;
chromosome1 GeneDB CDS 4927096 4927598 . - . mRNA SPAC1B3.01c ; colour "7" ;
chromosome1 GeneDB CDS 4927820 4927918 . - . mRNA SPAC1B3.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 4927004 4927021 . - . misc_feature unknown_4087 ; colour "6" ; note "ttaacacatatgatttag, splice branch and acceptor seque nce" ;
chromosome1 GeneDB misc_feature 4927090 4927095 . - . misc_feature unknown_4088 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4927599 4927614 . - . misc_feature unknown_4089 ; colour "6" ; note "ctaacatgatatttag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB intron 4927599 4927819 . - . intron SPAC1B3.01c ; db_xref "SPD:13/13H08" ; systematic_id "SPAC1B3.01c" ; gene "SPAC1B3.01c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4927814 4927819 . - . misc_feature unknown_4090 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4927917 4927964 . - . mRNA SPAC1B3.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B3.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4928402 4928960 . - . mRNA SPAC1B3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.02c" ; systematic_id "SPAC1B3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4928961 4929516 . - . mRNA SPAC1B3.02c ; db_xref "SPD:05/05G07" ; systematic_id "SPAC1B3.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL160W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0008270; zinc ion binding
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006325; establishment and/or maintenance of chromatin architecture
GO:0005634; nucleus" ; gene "SPAC1B3.02c" ; product "transcription elongation factor, Elf1 family (predicted)" ;
chromosome1 GeneDB CDS 4928961 4929100 . - . mRNA SPAC1B3.02c ; colour "7" ;
chromosome1 GeneDB CDS 4929249 4929319 . - . mRNA SPAC1B3.02c ; colour "7" ;
chromosome1 GeneDB CDS 4929363 4929409 . - . mRNA SPAC1B3.02c ; colour "7" ;
chromosome1 GeneDB CDS 4929451 4929516 . - . mRNA SPAC1B3.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 4929101 4929114 . - . misc_feature unknown_4091 ; colour "6" ; note "ctaacattatcaag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4929243 4929248 . - . misc_feature unknown_4092 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4929320 4929334 . - . misc_feature unknown_4093 ; colour "6" ; note "ttaacactttgatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4929357 4929362 . - . misc_feature unknown_4094 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4929410 4929422 . - . misc_feature unknown_4095 ; colour "6" ; note "ctaactttactag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4929445 4929450 . - . misc_feature unknown_4096 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 4929854 4929944 . - . mRNA SPAC1B3.03c ; Alias "wis2" ; ID "SPAC1B3.03c" ; db_xref "SPD:16/16E05" ; systematic_id "SPAC1B3.03c" ; primary_name "wis2" ; gene "wis2 ||| cyp5 ||| SPAC1B3.03c" ; note "mRNA from AU010377" ;
chromosome1 GeneDB CDS_parts 4929945 4931015 . - . mRNA SPAC1B3.03c ; systematic_id "SPAC1B3.03c" ; colour "2" ; gene "wis2 ||| cyp5 ||| SPAC1B3.03c" ; Alias "wis2" ; db_xref "SPD:16/16E05" ; synonym "cyp5" ; GO "GO:0007088; regulation of mitosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=gene expression, expression induced by heat shock; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YLR216C and YJR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "wis2" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Wis2" ; EC_number "5.2.1.8" ;
chromosome1 GeneDB CDS 4929945 4931015 . - . mRNA SPAC1B3.03c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4931014 4931150 . - . mRNA SPAC1B3.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B3.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4931204 4933354 . + . misc_RNA SPNCRNA.564 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.564" ; synonym "SPNG2AF7" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB 3'-UTR 4931421 4931481 . - . mRNA SPAC1B3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.04c" ; systematic_id "SPAC1B3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4931482 4933510 . - . mRNA SPAC1B3.04c ; db_xref "SPD:27/27E11" ; systematic_id "SPAC1B3.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR289W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0043022; ribosome binding
GO:0070131; posivtive regulation of mitochondrial translation" ; gene "SPAC1B3.04c" ; product "mitochondrial GTPase involved in translation Guf1 (predicted)" ;
chromosome1 GeneDB CDS 4931482 4932927 . - . mRNA SPAC1B3.04c ; colour "7" ;
chromosome1 GeneDB CDS 4933016 4933510 . - . mRNA SPAC1B3.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 4932928 4932943 . - . misc_feature unknown_4097 ; colour "6" ; note "ctaacgtattatttag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 4933010 4933015 . - . misc_feature unknown_4098 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4933509 4933677 . - . mRNA SPAC1B3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4934611 4934800 . + . mRNA SPAC1B3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4934801 4936749 . + . mRNA SPAC1B3.05 ; systematic_id "SPAC1B3.05" ; colour "7" ; gene "not3 ||| SPAC1B3.05" ; Alias "not3" ; db_xref "SPD:37/37B01" ; GO "GO:0030015; CCR4-NOT core complex
GO:0005737; cytoplasm
GO:0030528; transcription regulator activity
GO:0006354; RNA elongation
GO:0006402; mRNA catabolism
GO:0000289; poly(A) tail shortening
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL038C and YPR072W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "not3" ; product "CCR4-Not complex subunit Not3/5 (predicted)" ;
chromosome1 GeneDB CDS 4934801 4935025 . + . mRNA SPAC1B3.05 ; colour "7" ;
chromosome1 GeneDB CDS 4935082 4936749 . + . mRNA SPAC1B3.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 4935026 4935031 . + . misc_feature unknown_4099 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4935062 4935081 . + . misc_feature unknown_4100 ; colour "6" ; note "ctaacatatctatgcattag, splice branch and acceptor seq uence" ;
chromosome1 GeneDB 3'-UTR 4936750 4936926 . + . mRNA SPAC1B3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.05" ; systematic_id "SPAC1B3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB intron 4937014 4937169 . - . intron SPSNORNA.42 ; systematic_id "SPSNORNA.42" ; note "confirmed intron" ;
chromosome1 GeneDB snoRNA 4937170 4937394 . - . snoRNA SPSNORNA.42 ; Alias "snR90" ; db_xref "EMBL:AJ632008 ||| PMID:15716270" ; systematic_id "SPSNORNA.42" ; gene "SPSNORNA.42" ; primary_name "snR90" ; product "small nucleolar RNA snR90" ;
chromosome1 GeneDB 3'-UTR 4937808 4937996 . - . mRNA SPAC1B3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.06c" ; systematic_id "SPAC1B3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4937997 4938833 . - . mRNA SPAC1B3.06c ; db_xref "SPD:10/10H06" ; systematic_id "SPAC1B3.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827" ; colour "10" ; gene "SPAC1B3.06c" ; product "UbiE family methyltransferase (predicted)" ; note "possibly vitamin, cofactor or ergosterol metabolism" ;
chromosome1 GeneDB CDS 4937997 4938833 . - . mRNA SPAC1B3.06c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4938832 4938962 . - . mRNA SPAC1B3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 4939621 4939972 . + . LTR unknown_4101 ; note "Tf1-type LTR" ;
chromosome1 GeneDB 3'-UTR 4940553 4940689 . - . mRNA SPAC1B3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.07c" ; systematic_id "SPAC1B3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4940690 4941436 . - . mRNA SPAC1B3.07c ; systematic_id "SPAC1B3.07c" ; colour "2" ; gene "vps28 ||| SPAC1B3.07c" ; Alias "vps28" ; db_xref "SPD:09/09B01" ; GO "GO:0000813; ESCRT I complex
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps28" ; product "ESCRT I complex subunit Vps28" ;
chromosome1 GeneDB CDS 4940690 4941436 . - . mRNA SPAC1B3.07c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4941435 4941486 . - . mRNA SPAC1B3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 4941720 4942068 . + . LTR unknown_4102 ; note "Tf2-type LTR" ;
chromosome1 GeneDB CDS_parts 4942226 4942435 . + . mRNA SPAC1B3.21 ; Alias "tam3" ; systematic_id "SPAC1B3.21" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=orthologous to S. cerevisiae YJL062W-A; date=20090716 ||| term=conserved in Fungi; date=20090716 ||| term=conserved in Fungi only; date=20090716 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "tam3" ; gene "SPAC1B3.21" ; product "mitochondrial conserved protein" ;
chromosome1 GeneDB CDS 4942226 4942435 . + . mRNA SPAC1B3.21 ; colour "10" ;
chromosome1 GeneDB CDS_parts 4942676 4943947 . + . mRNA SPAC1B3.08 ; db_xref "SPD:20/20D03" ; systematic_id "SPAC1B3.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PINT/PCI domain; qualifier=inferred from context; date=19700101 ||| term=IQ domain; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YJR084W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000338; protein deneddylation" ; gene "SPAC1B3.08" ; product "COP9 signalosome complex subunit 12 (predicted)" ;
chromosome1 GeneDB CDS 4942676 4943947 . + . mRNA SPAC1B3.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4943948 4944022 . + . mRNA SPAC1B3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.08" ; systematic_id "SPAC1B3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4944132 4944227 . - . mRNA SPAC1B3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.09c" ; systematic_id "SPAC1B3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4944228 4945814 . - . mRNA SPAC1B3.09c ; db_xref "SPD:25/25E09" ; systematic_id "SPAC1B3.09c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR206W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030691; Noc2p-Noc3p complex
GO:0005730; nucleolus
GO:0042254; ribosome biogenesis
GO:0000054; ribosome export from nucleus
GO:0030690; Noc1p-Noc2p complex" ; gene "SPAC1B3.09c" ; product "Noc2p-Noc3p complex subunit Noc2 family (predicted)" ;
chromosome1 GeneDB CDS 4944228 4945814 . - . mRNA SPAC1B3.09c ; colour "7" ;
chromosome1 GeneDB misc_feature 4945985 4945996 . - . misc_feature unknown_4103 ; colour "6" ; note "ttaatcctacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4946088 4946093 . - . misc_feature unknown_4104 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 4946090 4948084 . - . mRNA SPAC1B3.10c ; db_xref "SPD:37/37F03" ; systematic_id "SPAC1B3.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SEL1 repeat protein; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC1B3.10c" ; product "SEL1 repeat protein, unknown biological role" ;
chromosome1 GeneDB CDS 4946090 4948084 . - . mRNA SPAC1B3.10c ; colour "10" ;
chromosome1 GeneDB CDS_parts 4948616 4948896 . + . mRNA SPAC1B3.20 ; db_xref "SPD:01/01C08" ; systematic_id "SPAC1B3.20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1B3.20" ; product "sequence orphan" ; note "confirmed intron" ;
chromosome1 GeneDB CDS 4948616 4948758 . + . mRNA SPAC1B3.20 ; colour "8" ;
chromosome1 GeneDB CDS 4948803 4948896 . + . mRNA SPAC1B3.20 ; colour "8" ;
chromosome1 GeneDB intron 4948759 4948802 . + . intron SPAC1B3.20 ; db_xref "SPD:01/01C08" ; systematic_id "SPAC1B3.20" ; gene "SPAC1B3.20" ; note "confirmed intron" ;
chromosome1 GeneDB 3'-UTR 4948897 4949022 . + . mRNA SPAC1B3.20 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.20" ; systematic_id "SPAC1B3.20" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4949138 4949269 . - . mRNA SPAC1B3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.11c" ; systematic_id "SPAC1B3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4949270 4950022 . - . mRNA SPAC1B3.11c ; systematic_id "SPAC1B3.11c" ; colour "2" ; gene "ypt4 ||| SPAC1B3.11c" ; Alias "ypt4" ; db_xref "SPD:43/43B04" ; GO "GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0060627; regulation of vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Ypt subfamily; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ypt4" ; product "GTPase Ypt4" ;
chromosome1 GeneDB CDS 4949270 4949874 . - . mRNA SPAC1B3.11c ; colour "2" ;
chromosome1 GeneDB CDS 4949923 4950022 . - . mRNA SPAC1B3.11c ; colour "2" ;
chromosome1 GeneDB misc_feature 4949875 4949888 . - . misc_feature unknown_4105 ; colour "6" ; note "ttaatggaaattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4949917 4949922 . - . misc_feature unknown_4106 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4950021 4950071 . - . mRNA SPAC1B3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4950347 4950639 . - . mRNA SPAC1B3.12c ; Alias "rpb10" ; ID "SPAC1B3.12c" ; db_xref "EMBL:U80219 ||| SPD:06/06E09" ; systematic_id "SPAC1B3.12c" ; gene "rpb10 ||| SPAC1B3.12c" ; primary_name "rpb10" ;
chromosome1 GeneDB CDS_parts 4950640 4951234 . - . mRNA SPAC1B3.12c ; systematic_id "SPAC1B3.12c" ; colour "2" ; gene "rpb10 ||| SPAC1B3.12c" ; Alias "rpb10" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:06/06E09" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
; DNA-directed RNA polymerase III complex
GO:0003899
GO:0005515; protein binding
GO:0006360; transcription from RNA polymerase I promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0006383; transcription from RNA polymerase III promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YOR210W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpb10" ; product "DNA-directed RNA polymerase I, II, and III subunit Rpb10" ;
chromosome1 GeneDB CDS 4950640 4950665 . - . mRNA SPAC1B3.12c ; colour "2" ;
chromosome1 GeneDB CDS 4950729 4950882 . - . mRNA SPAC1B3.12c ; colour "2" ;
chromosome1 GeneDB CDS 4951199 4951234 . - . mRNA SPAC1B3.12c ; colour "2" ;
chromosome1 GeneDB misc_feature 4950666 4950681 . - . misc_feature unknown_4107 ; colour "6" ; note "ctaactcaagtgtttag, splice branch and acceptor sequen ce" ;
chromosome1 GeneDB intron 4950666 4950728 . - . intron SPAC1B3.12c ; Alias "rpb10" ; db_xref "EMBL:U80219 ||| SPD:06/06E09" ; systematic_id "SPAC1B3.12c" ; gene "rpb10 ||| SPAC1B3.12c" ; primary_name "rpb10" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4950723 4950728 . - . misc_feature unknown_4108 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4950883 4950894 . - . misc_feature unknown_4109 ; colour "6" ; note "ctaatacagcag, splice branch and acceptor sequence" ;
chromosome1 GeneDB intron 4950883 4951198 . - . intron SPAC1B3.12c ; Alias "rpb10" ; db_xref "EMBL:U80219 ||| SPD:06/06E09" ; systematic_id "SPAC1B3.12c" ; gene "rpb10 ||| SPAC1B3.12c" ; primary_name "rpb10" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 4951193 4951198 . - . misc_feature unknown_4110 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4951235 4951268 . - . mRNA SPAC1B3.12c ; Alias "rpb10" ; ID "SPAC1B3.12c" ; db_xref "EMBL:U80219" ; systematic_id "SPAC1B3.12c" ; gene "rpb10 ||| SPAC1B3.12c" ; primary_name "rpb10" ;
chromosome1 GeneDB 5'-UTR 4951389 4951449 . + . mRNA SPAC1B3.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B3.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4951450 4954023 . + . mRNA SPAC1B3.13 ; db_xref "SPD:29/29D06" ; systematic_id "SPAC1B3.13" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex" ; gene "SPAC1B3.13" ; product "U3 snoRNP-associated protein Nan1 (predicted)" ;
chromosome1 GeneDB CDS 4951450 4951565 . + . mRNA SPAC1B3.13 ; colour "7" ;
chromosome1 GeneDB CDS 4951737 4954023 . + . mRNA SPAC1B3.13 ; colour "7" ;
chromosome1 GeneDB misc_feature 4951566 4951571 . + . misc_feature unknown_4111 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4951717 4951736 . + . misc_feature unknown_4112 ; colour "6" ; note "ctaatttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 4954024 4954199 . + . mRNA SPAC1B3.13 ; ID "SPAC1B3.13" ; db_xref "SPD:29/29D06" ; systematic_id "SPAC1B3.13" ; gene "SPAC1B3.13" ; note "mRNA from AU009650" ;
chromosome1 GeneDB 5'-UTR 4954578 4954633 . + . mRNA SPAC1B3.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B3.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4954634 4955443 . + . mRNA SPAC1B3.14 ; systematic_id "SPAC1B3.14" ; colour "2" ; gene "vma3 ||| SPAC1B3.14" ; Alias "vma3" ; db_xref "SPD:10/10C12" ; GO "GO:0000220; vacuolar protein-transporting V-type ATPase, V0 domain
GO:0046961; hydrogen ion transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0006897; endocytosis
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "vma3" ; product "V-type ATPase V0 subunit c (proteolipid subunit)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB CDS 4954634 4954650 . + . mRNA SPAC1B3.14 ; colour "2" ;
chromosome1 GeneDB CDS 4954696 4954701 . + . mRNA SPAC1B3.14 ; colour "2" ;
chromosome1 GeneDB CDS 4954748 4954879 . + . mRNA SPAC1B3.14 ; colour "2" ;
chromosome1 GeneDB CDS 4955068 4955392 . + . mRNA SPAC1B3.14 ; colour "2" ;
chromosome1 GeneDB CDS 4955438 4955443 . + . mRNA SPAC1B3.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 4954651 4954656 . + . misc_feature unknown_4113 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4954684 4954695 . + . misc_feature unknown_4114 ; colour "6" ; note "ctaacgttttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4954702 4954707 . + . misc_feature unknown_4115 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4954736 4954747 . + . misc_feature unknown_4116 ; colour "6" ; note "ctgacaatgtag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 4954880 4954885 . + . misc_feature unknown_4117 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4955052 4955067 . + . misc_feature unknown_4118 ; colour "6" ; note "ctaacttatcattcag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 4955393 4955398 . + . misc_feature unknown_4119 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4955424 4955437 . + . misc_feature unknown_4120 ; colour "6" ; note "ctaaccctctttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 4955444 4955621 . + . mRNA SPAC1B3.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.14" ; systematic_id "SPAC1B3.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4955830 4957716 . - . mRNA SPAC1B3.15c ; db_xref "SPD:26/26D09" ; systematic_id "SPAC1B3.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=20061218 ||| term=orthologous to S. cerevisiae YGR065C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0015225; biotin transporter activity
GO:0005887; integral to plasma membrane
GO:0015878; biotin transport" ; gene "SPAC1B3.15c" ; product "vigtamin H transporter (predicted)" ;
chromosome1 GeneDB CDS 4955830 4957716 . - . mRNA SPAC1B3.15c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 4958706 4959093 . - . mRNA SPAC1B3.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.16c" ; systematic_id "SPAC1B3.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4959094 4960800 . - . mRNA SPAC1B3.16c ; systematic_id "SPAC1B3.16c" ; colour "2" ; gene "vht1 ||| SPAC1B3.16c" ; Alias "vht1" ; db_xref "SPD:35/35E01" ; GO "GO:0015225; biotin transporter activity
GO:0005887; integral to plasma membrane
GO:0015878; biotin transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=20061218 ||| term=orthologous to S. cerevisiae YGR065C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=complementation, functionally complements S. cerevisiae VHT1; db_xref=PMID:12557275; date=20101012" ; primary_name "vht1" ; product "vitamin H transporter Vth1" ;
chromosome1 GeneDB CDS 4959094 4960800 . - . mRNA SPAC1B3.16c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4960799 4960962 . - . mRNA SPAC1B3.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B3.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4962521 4963013 . + . misc_RNA SPNCRNA.256 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.256" ; synonym "SPNG937" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 4964590 4965275 . + . mRNA SPAC1B3.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1B3.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4965276 4966889 . + . mRNA SPAC1B3.17 ; systematic_id "SPAC1B3.17" ; colour "2" ; gene "clr2 ||| SPAC1B3.17" ; Alias "clr2" ; db_xref "SPD:45/45D05" ; GO "GO:0030466; chromatin silencing at silent mating- type cassette
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0016575; histone deacetylation
GO:0016581; NuRD complex
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0006342; chromatin silencing
GO:0005721; centric heterochromatin
GO:0031933; telomeric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0033553; rDNA heterochromatin
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Cryptic Loci Regulator; date=20100727" ; primary_name "clr2" ; product "chromatin silencing protein Clr2" ;
chromosome1 GeneDB CDS 4965276 4966889 . + . mRNA SPAC1B3.17 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4966890 4966956 . + . mRNA SPAC1B3.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.17" ; systematic_id "SPAC1B3.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4966955 4967222 . - . mRNA SPAC1B3.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1B3.18c" ; systematic_id "SPAC1B3.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4967223 4967894 . - . mRNA SPAC1B3.18c ; systematic_id "SPAC1B3.18c" ; colour "7" ; gene "SPAC1B3.18c ||| mrps18" ; Alias "mrps18" ; db_xref "SPD:07/07G01" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL306W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mrps18" ; product "mitochondrial ribosomal protein subunit S18 (predicted)" ;
chromosome1 GeneDB CDS 4967223 4967894 . - . mRNA SPAC1B3.18c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4967998 4968145 . + . mRNA SPAC1952.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4968146 4969599 . + . mRNA SPAC1952.01 ; systematic_id "SPAC1952.01" ; colour "7" ; gene "SPAC1B3.19 ||| SPAC1952.01" ; Alias "SPAC1B3.19" ; db_xref "SPD:23/23D09" ; synonym "SPAC1B3.19" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20061211 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061211 ||| term=orthologous to S. cerevisiae YLR459W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0003923; GPI-anchor transamidase activity
GO:0016255; attachment of GPI anchor to protein
GO:0042765; GPI-anchor transamidase complex" ; primary_name "SPAC1B3.19" ; product "Pig-U (predicted)" ;
chromosome1 GeneDB CDS 4968146 4968537 . + . mRNA SPAC1952.01 ; colour "7" ;
chromosome1 GeneDB CDS 4968765 4969599 . + . mRNA SPAC1952.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 4968538 4968543 . + . misc_feature unknown_4121 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4968745 4968764 . + . misc_feature unknown_4122 ; colour "6" ; note "ctaacaaaatattactttag, splice branch and acceptor seq uence" ;
chromosome1 GeneDB misc_feature 4968775 4968869 . + . misc_feature unknown_4123 ; note "nominal overlap with cosmid SPAC1952 and cosmid SPAC1B3" ;
chromosome1 GeneDB 5'-UTR 4969652 4969891 . + . mRNA SPAC1952.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4969892 4970645 . + . mRNA SPAC1952.02 ; db_xref "SPD:10/10E12" ; systematic_id "SPAC1952.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=orthologous to S. cerevisiae YMR269W; date=19700101 ||| term=human GPATCH4 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; gene "SPAC1952.02" ; product "ribosome biogenesis protein (predicted)" ;
chromosome1 GeneDB CDS 4969892 4970005 . + . mRNA SPAC1952.02 ; colour "7" ;
chromosome1 GeneDB CDS 4970087 4970179 . + . mRNA SPAC1952.02 ; colour "7" ;
chromosome1 GeneDB CDS 4970244 4970645 . + . mRNA SPAC1952.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 4970006 4970011 . + . misc_feature unknown_4124 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 4970006 4970086 . + . intron SPAC1952.02 ; db_xref "SPD:10/10E12" ; systematic_id "SPAC1952.02" ; gene "SPAC1952.02" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4970073 4970086 . + . misc_feature unknown_4125 ; colour "6" ; note "ttaacacacggtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4970180 4970185 . + . misc_feature unknown_4126 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB intron 4970180 4970243 . + . intron SPAC1952.02 ; db_xref "SPD:10/10E12" ; systematic_id "SPAC1952.02" ; gene "SPAC1952.02" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 4970228 4970243 . + . misc_feature unknown_4127 ; colour "6" ; note "ctaacatttggaaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4970646 4970737 . + . mRNA SPAC1952.02 ; ID "SPAC1952.02" ; db_xref "SPD:10/10E12" ; systematic_id "SPAC1952.02" ; gene "SPAC1952.02" ; note "mRNA from AU011221" ;
chromosome1 GeneDB 5'-UTR 4970821 4971116 . + . mRNA SPAC1952.03 ; ID "SPAC1952.03" ; systematic_id "SPAC1952.03" ; note "mRNA from AU008375" ;
chromosome1 GeneDB CDS_parts 4971117 4972137 . + . mRNA SPAC1952.03 ; systematic_id "SPAC1952.03" ; colour "2" ; db_xref "SPD:15/15C07" ; Alias "otu2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human OTUD6A and OTUD6B ortholog; date=20100420 ||| term=name description, OTU family; cv=name_description; date=20080908" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005737; cytoplasm" ; primary_name "otu2" ; product "ubiquitin specific cysteine protease, OTU family, Otu2" ;
chromosome1 GeneDB CDS 4971117 4971548 . + . mRNA SPAC1952.03 ; colour "2" ;
chromosome1 GeneDB CDS 4971595 4972137 . + . mRNA SPAC1952.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 4971549 4971554 . + . misc_feature unknown_4128 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4971578 4971594 . + . misc_feature unknown_4129 ; colour "6" ; note "ctaacaaagttaattag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 4972134 4972986 . - . mRNA SPAC1952.04c ; systematic_id "SPAC1952.04c" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1952.04c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 4972134 4972225 . - . mRNA SPAC1952.04c ; colour "8" ;
chromosome1 GeneDB CDS 4972353 4972369 . - . mRNA SPAC1952.04c ; colour "8" ;
chromosome1 GeneDB CDS 4972430 4972662 . - . mRNA SPAC1952.04c ; colour "8" ;
chromosome1 GeneDB CDS 4972852 4972986 . - . mRNA SPAC1952.04c ; colour "8" ;
chromosome1 GeneDB 3'-UTR 4972138 4972238 . + . mRNA SPAC1952.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1952.03" ; systematic_id "SPAC1952.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 4972226 4972237 . - . misc_feature unknown_4130 ; colour "6" ; note "ctaactcgtaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4972347 4972352 . - . misc_feature unknown_4131 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4972370 4972389 . - . misc_feature unknown_4132 ; colour "6" ; note "ctaatgcttccctgatgaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4972424 4972429 . - . misc_feature unknown_4133 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4972672 4973473 . + . misc_feature unknown_4134 ; note "Duplicated in c750 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 4973664 4974115 . + . mRNA SPAC1952.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4974116 4975480 . + . mRNA SPAC1952.05 ; systematic_id "SPAC1952.05" ; colour "2" ; gene "gcn5 ||| SPAC1952.05" ; Alias "gcn5" ; db_xref "SPD:44/44D01" ; synonym "kat2" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=orthologous to S. cerevisiae YGR252W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19056896; date=20090110 ||| term=misc, negatively regulates sexual differentiation in nutrient rich conditions by repression of Ste11; db_xref=PMID:19056896; date=20101207" ; GO "GO:0010484; histone H3 acetyltransferase activity
GO:0006338; chromatin remodeling
GO:0043966; histone H3 acetylation
GO:0007131; meiotic recombination
GO:0000790; nuclear chromatin
GO:0044154; histone H3-K14 acetylation
GO:0043971; histone H3-K18 acetylation
GO:0043972; histone H3-K23 acetylation
GO:0043970; histone H3-K9 acetylation" ; primary_name "gcn5" ; product "SAGA complex histone acetyltransferase catalytic subunit Gcn5" ;
chromosome1 GeneDB CDS 4974116 4975480 . + . mRNA SPAC1952.05 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 4975481 4975589 . + . mRNA SPAC1952.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1952.05" ; systematic_id "SPAC1952.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4975630 4975745 . - . mRNA SPAC1952.06c ; ID "SPAC1952.06c" ; db_xref "SPD:45/45E10" ; systematic_id "SPAC1952.06c" ; gene "SPAC1952.06c" ; note "mRNA from AU009909" ;
chromosome1 GeneDB CDS_parts 4975746 4977440 . - . mRNA SPAC1952.06c ; db_xref "SPD:45/45E10" ; systematic_id "SPAC1952.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPAC1952.06c" ; product "DUF1716 family protein" ;
chromosome1 GeneDB CDS 4975746 4977440 . - . mRNA SPAC1952.06c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 4977439 4977844 . - . mRNA SPAC1952.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 4978507 4978618 . + . mRNA SPAC1952.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4978619 4979759 . + . mRNA SPAC1952.07 ; systematic_id "SPAC1952.07" ; colour "2" ; gene "rad1 ||| SPAC1952.07" ; Alias "rad1" ; db_xref "SPD:32/32E08" ; GO "GO:0030896; checkpoint clamp complex
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007095; mitotic cell cycle G2-M transition DNA damage checkpoint
GO:0006281; DNA repair
GO:0005515; protein binding
GO:0031573; intra-S DNA damage checkpoint" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR368W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rad1" ; product "checkpoint clamp complex protein Rad1" ;
chromosome1 GeneDB CDS 4978619 4978754 . + . mRNA SPAC1952.07 ; colour "2" ;
chromosome1 GeneDB CDS 4978881 4979121 . + . mRNA SPAC1952.07 ; colour "2" ;
chromosome1 GeneDB CDS 4979165 4979759 . + . mRNA SPAC1952.07 ; colour "2" ;
chromosome1 GeneDB misc_feature 4978755 4978760 . + . misc_feature unknown_4135 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB intron 4978755 4978880 . + . intron SPAC1952.07 ; Alias "rad1" ; db_xref "SPD:32/32E08" ; systematic_id "SPAC1952.07" ; primary_name "rad1" ; gene "rad1 ||| SPAC1952.07" ; note "confirmed intron from EST" ;
chromosome1 GeneDB misc_feature 4978868 4978880 . + . misc_feature unknown_4136 ; colour "6" ; note "ctcacacattaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4979122 4979127 . + . misc_feature unknown_4137 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB intron 4979122 4979164 . + . intron SPAC1952.07 ; Alias "rad1" ; db_xref "SPD:32/32E08" ; systematic_id "SPAC1952.07" ; primary_name "rad1" ; gene "rad1 ||| SPAC1952.07" ; note "confirmed intron from EST" ;
chromosome1 GeneDB misc_feature 4979150 4979164 . + . misc_feature unknown_4138 ; colour "6" ; note "ctgacaaaaataaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4979760 4979881 . + . mRNA SPAC1952.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1952.07" ; systematic_id "SPAC1952.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4979881 4980138 . - . mRNA SPAC1952.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1952.08c" ; systematic_id "SPAC1952.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4980139 4980786 . - . mRNA SPAC1952.08c ; db_xref "SPD:07/07D08" ; systematic_id "SPAC1952.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR456W and YPR172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0004733; pyridoxamine-phosphate oxidase activity
GO:0042818; pyridoxamine metabolic process" ; gene "SPAC1952.08c" ; product "pyridoxamine 5'-phosphate oxidase (predicted)" ;
chromosome1 GeneDB CDS 4980139 4980486 . - . mRNA SPAC1952.08c ; colour "7" ;
chromosome1 GeneDB CDS 4980562 4980786 . - . mRNA SPAC1952.08c ; colour "7" ;
chromosome1 GeneDB misc_feature 4980487 4980502 . - . misc_feature unknown_4139 ; colour "6" ; note "ctaacatgatgactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4980556 4980561 . - . misc_feature unknown_4140 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4980785 4980925 . - . mRNA SPAC1952.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4981215 4981333 . - . mRNA SPAC1952.09c ; ID "SPAC1952.09c" ; db_xref "SPD:25/25C06" ; systematic_id "SPAC1952.09c" ; gene "SPAC1952.09c" ; note "mRNA from SPD222" ;
chromosome1 GeneDB CDS_parts 4981334 4982899 . - . mRNA SPAC1952.09c ; db_xref "SPD:25/25C06" ; systematic_id "SPAC1952.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL015W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618 ||| term=species distribution, conserved in Metazoa; date=20090618 ||| term=species distribution, conserved in Bacteria; date=20090618 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; colour "7" ; GO "GO:0005829; cytosol
GO:0005739; mitochondrion
GO:0003986; acetyl-CoA hydrolase activity
GO:0006083; acetate metabolism
GO:0006084; acetyl-CoA metabolism
GO:0006633; fatty acid biosynthetic process" ; gene "SPAC1952.09c" ; product "acetyl-CoA hydrolase (predicted)" ;
chromosome1 GeneDB CDS 4981334 4982899 . - . mRNA SPAC1952.09c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4982898 4983568 . - . mRNA SPAC1952.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4984444 4985093 . - . mRNA SPAC1952.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1952.10c" ; systematic_id "SPAC1952.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4985094 4986294 . - . mRNA SPAC1952.10c ; db_xref "SPD:19/19C01" ; systematic_id "SPAC1952.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC23H3.04; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005886; plasma membrane" ; gene "SPAC1952.10c" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 4985094 4985906 . - . mRNA SPAC1952.10c ; colour "10" ;
chromosome1 GeneDB CDS 4986022 4986294 . - . mRNA SPAC1952.10c ; colour "10" ;
chromosome1 GeneDB misc_feature 4985907 4985927 . - . misc_feature unknown_4141 ; colour "6" ; note "ctaaccgaattatacgtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4986016 4986021 . - . misc_feature unknown_4142 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 4986293 4986370 . - . mRNA SPAC1952.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4986738 4989245 . - . mRNA SPAC1952.11c ; systematic_id "SPAC1952.11c" ; colour "2" ; gene "ure2 ||| SPAC1952.11c" ; db_xref "SPD:29/29B03" ; Alias "ure2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "ure2" ; product "urease Ure2" ; EC_number "3.5.1.5" ;
chromosome1 GeneDB CDS 4986738 4989245 . - . mRNA SPAC1952.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 4989244 4989338 . - . mRNA SPAC1952.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4989781 4990046 . - . mRNA SPAC1952.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1952.12c" ; systematic_id "SPAC1952.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4990047 4990664 . - . mRNA SPAC1952.12c ; systematic_id "SPAC1952.12c" ; colour "7" ; gene "csn71 ||| csn7a ||| csn7 ||| SPAC1952.12c" ; Alias "csn71" ; db_xref "SPD:07/07A02" ; synonym "csn7a ||| csn7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0010388; cullin deneddylation
GO:0008180; signalosome" ; primary_name "csn71" ; product "COP9/signalosome complex subunit 7a (predicted)" ;
chromosome1 GeneDB CDS 4990047 4990664 . - . mRNA SPAC1952.12c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4990663 4990986 . - . mRNA SPAC1952.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4991146 4993334 . + . mRNA SPAC1952.13 ; systematic_id "SPAC1952.13" ; colour "2" ; gene "ned1 ||| SPAC1952.13" ; Alias "ned1" ; db_xref "SPD:37/37H03" ; GO "GO:0005737; cytoplasm
GO:0000287; magnesium ion binding
GO:0008195; phosphatidate phosphatase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0007029; endoplasmic reticulum organization and biogenesis
GO:0006998; nuclear membrane organization and biogenesis
GO:0006997; nuclear organization and biogenesis
GO:0006913; nucleocytoplasmic transport
GO:0071071; regulation of phospholipid biosynthesis
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, nuclear elongation and deformation; cv=name_description; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12376568; date=19700101 ||| term=orthologous to S. cerevisiae YMR165C; db_xref=PMID:12376568; date=19700101 ||| term=disease associated, lipodystrophy; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "ned1" ; product "lipin Ned1" ; EC_number "3.1.3.4" ;
chromosome1 GeneDB CDS 4991146 4991205 . + . mRNA SPAC1952.13 ; colour "2" ;
chromosome1 GeneDB CDS 4991276 4991557 . + . mRNA SPAC1952.13 ; colour "2" ;
chromosome1 GeneDB CDS 4991706 4993334 . + . mRNA SPAC1952.13 ; colour "2" ;
chromosome1 GeneDB misc_feature 4991206 4991211 . + . misc_feature unknown_4143 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 4991206 4991275 . + . intron SPAC1952.13 ; Alias "ned1" ; db_xref "SPD:37/37H03" ; systematic_id "SPAC1952.13" ; primary_name "ned1" ; gene "ned1 ||| SPAC1952.13" ; note "confirmed (PMID:12376568)" ;
chromosome1 GeneDB misc_feature 4991256 4991275 . + . misc_feature unknown_4144 ; colour "6" ; note "ctaacagtgttcgtaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4991558 4991563 . + . misc_feature unknown_4145 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 4991558 4991705 . + . intron SPAC1952.13 ; Alias "ned1" ; db_xref "SPD:37/37H03" ; systematic_id "SPAC1952.13" ; primary_name "ned1" ; gene "ned1 ||| SPAC1952.13" ; note "confirmed (PMID:12376568)" ;
chromosome1 GeneDB misc_feature 4991688 4991705 . + . misc_feature unknown_4146 ; colour "6" ; note "ctaacagtcttgctttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4993335 4993572 . + . mRNA SPAC1952.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1952.13" ; systematic_id "SPAC1952.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 4993743 4993997 . - . mRNA SPAC1952.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1952.14c" ; systematic_id "SPAC1952.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 4993998 4994444 . - . mRNA SPAC1952.14c ; systematic_id "SPAC1952.14c" ; colour "7" ; gene "SPAC1952.14c ||| mrpl25" ; Alias "mrpl25" ; db_xref "SPD:03/03H02" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR076C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mrpl25" ; product "mitochondrial ribosomal protein subunit L25 (predicted)" ;
chromosome1 GeneDB CDS 4993998 4994444 . - . mRNA SPAC1952.14c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 4994443 4994455 . - . mRNA SPAC1952.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 4994799 4995315 . + . misc_RNA SPNCRNA.257 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.257" ; synonym "SPNG944" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 4996030 4997222 . - . mRNA SPAC1952.15c ; systematic_id "SPAC1952.15c" ; colour "2" ; gene "rec24 ||| mug6 ||| SPAC1952.15c" ; Alias "rec24" ; db_xref "SPD:44/44A04" ; synonym "mug6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination" ; primary_name "rec24" ; product "meiotic recombination protein Rec24" ;
chromosome1 GeneDB CDS 4996030 4996763 . - . mRNA SPAC1952.15c ; colour "2" ;
chromosome1 GeneDB CDS 4996904 4997222 . - . mRNA SPAC1952.15c ; colour "2" ;
chromosome1 GeneDB misc_feature 4996764 4996780 . - . misc_feature unknown_4147 ; colour "6" ; note "ttaacaatccaatctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4996898 4996903 . - . misc_feature unknown_4148 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 4997617 4999955 . + . mRNA SPAC1952.16 ; systematic_id "SPAC1952.16" ; colour "7" ; gene "rga9 ||| SPAC1952.16" ; db_xref "SPD:28/28D06" ; Alias "rga9" ; GO "GO:0007264; small GTPase mediated signal transduction
GO:0005096; GTPase activator activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Rho GAp family; db_xref=PMID:14506270; cv=name_description; date=20091230" ; primary_name "rga9" ; product "RhoGAP, GTPase activator towards Rho/Rac/Cdc42- like small GTPases (predicted)" ;
chromosome1 GeneDB CDS 4997617 4997719 . + . mRNA SPAC1952.16 ; colour "7" ;
chromosome1 GeneDB CDS 4997775 4997935 . + . mRNA SPAC1952.16 ; colour "7" ;
chromosome1 GeneDB CDS 4997988 4999017 . + . mRNA SPAC1952.16 ; colour "7" ;
chromosome1 GeneDB CDS 4999068 4999154 . + . mRNA SPAC1952.16 ; colour "7" ;
chromosome1 GeneDB CDS 4999207 4999233 . + . mRNA SPAC1952.16 ; colour "7" ;
chromosome1 GeneDB CDS 4999274 4999672 . + . mRNA SPAC1952.16 ; colour "7" ;
chromosome1 GeneDB CDS 4999708 4999955 . + . mRNA SPAC1952.16 ; colour "7" ;
chromosome1 GeneDB misc_feature 4997720 4997725 . + . misc_feature unknown_4149 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4997759 4997774 . + . misc_feature unknown_4150 ; colour "6" ; note "ttaacaatacgtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4997936 4997941 . + . misc_feature unknown_4151 ; colour "6" ; note "gtatac, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4997972 4997987 . + . misc_feature unknown_4152 ; colour "6" ; note "ctaatatttacaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4999018 4999023 . + . misc_feature unknown_4153 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4999057 4999067 . + . misc_feature unknown_4154 ; colour "6" ; note "ctaacctacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4999155 4999160 . + . misc_feature unknown_4155 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4999194 4999206 . + . misc_feature unknown_4156 ; colour "6" ; note "ctaatataatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4999234 4999239 . + . misc_feature unknown_4157 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4999260 4999273 . + . misc_feature unknown_4158 ; colour "6" ; note "ctaatttttgctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 4999673 4999678 . + . misc_feature unknown_4159 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 4999697 4999707 . + . misc_feature unknown_4160 ; colour "6" ; note "ctaacctctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 4999993 5000023 . - . mRNA SPAC1952.17c ; ID "SPAC1952.17c" ; db_xref "SPD:27/27A02" ; systematic_id "SPAC1952.17c" ; gene "SPAC1952.17c ||| SPAC890.01c" ; note "mRNA from AU007954" ;
chromosome1 GeneDB CDS_parts 5000024 5001976 . - . mRNA SPAC1952.17c ; systematic_id "SPAC1952.17c" ; colour "7" ; gene "SPAC1952.17c ||| SPAC890.01c" ; db_xref "SPD:27/27A02" ; synonym "SPAC890.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB CDS 5000024 5000272 . - . mRNA SPAC1952.17c ; colour "7" ;
chromosome1 GeneDB CDS 5000325 5000891 . - . mRNA SPAC1952.17c ; colour "7" ;
chromosome1 GeneDB CDS 5000933 5001976 . - . mRNA SPAC1952.17c ; colour "7" ;
chromosome1 GeneDB misc_feature 5000273 5000288 . - . misc_feature unknown_4161 ; colour "6" ; note "ttaactcagtttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5000319 5000324 . - . misc_feature unknown_4162 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5000892 5000906 . - . misc_feature unknown_4163 ; colour "6" ; note "ctgaccaaccattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5000927 5000932 . - . misc_feature unknown_4164 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5001624 5001742 . + . misc_feature unknown_4165 ; note "nominal overlap with cosmid SPAC1952 S. pombe chromosome 1" ;
chromosome1 GeneDB 5'-UTR 5001975 5002266 . - . mRNA SPAC1952.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1952.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5002542 5002770 . - . mRNA SPAC890.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC890.02c" ; systematic_id "SPAC890.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5002771 5004195 . - . mRNA SPAC890.02c ; systematic_id "SPAC890.02c" ; colour "2" ; db_xref "SPD:21/21H06" ; Alias "alp7" ; synonym "mia1" ; GO "GO:0070850; TACC/TOG complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005737; cytoplasm
GO:0015630; microtubule cytoskeleton
GO:0015630; microtubule cytoskeleton
GO:0005634; nucleus
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0030953; astral microtubule organization and biogenesis
GO:0034613; cellular protein localization
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0000132; establishment of mitotic spindle orientation
GO:0000226; microtubule cytoskeleton organization
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12360293; date=19700101 ||| term=phenotype, spindle defects, short spindles; qualifier=high_penetrance|deletion|during_mitosis; cv=phenotype; db_xref=PMID:12360293; date=19700101 ||| term=phenotype, chromosome segregation defects; qualifier=during_mitosis; db_xref=PMID:19696784; date=20100909 ||| term=phenotype, microtubule organization defects; allele=Mia1p-MutNES4; cv=phenotype; db_xref=PMID:19206211; date=20090817 ||| term=phenotype, spindle defects; qualifier=during_mitosis; allele=Mia1p-MutNES4; cv=phenotype; db_xref=PMID:19206211; date=20090817 ||| term=phenotype, sensitive to high temperature; cv=phenotype; db_xref=PMID:19696784; date=20091127 ||| term=phenotype, growth defect, slow growth at high temperatures; cv=phenotype; db_xref=PMID:19696784; date=20091127 ||| term=phenotype, chromosome segregation defects; cv=phenotype; db_xref=PMID:19696784; date=20091127 ||| term=human TACC1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:19206211; cv=localization; date=20090817 ||| term=localization, undergoes nucleocytoplasmic shuttling; qualifier=during_mitosis; db_xref=PMID:19696784; cv=localization; date=20090817 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=protein sequence feature, NES; evidence=IMP; cv=sequence_feature; db_xref=PMID:19696784; date=20091127 ||| term=protein sequence feature, NLS; evidence=IMP; cv=sequence_feature; db_xref=PMID:19696784; date=20091127" ; primary_name "alp7" ; product "centrosomal transforming acidic coiled-coil (TACC) protein ortholog Alp7" ;
chromosome1 GeneDB CDS 5002771 5004195 . - . mRNA SPAC890.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5004194 5004467 . - . mRNA SPAC890.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC890.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5004629 5004670 . + . mRNA SPAC890.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC890.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5004671 5006971 . + . mRNA SPAC890.03 ; systematic_id "SPAC890.03" ; colour "2" ; gene "ppk16 ||| SPAC890.03 ||| mug92" ; Alias "ppk16" ; db_xref "SPD:38/38B10" ; synonym "mug92" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YPL150W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "ppk16" ; product "serine/threonine protein kinase Ppk16 (predicted)" ;
chromosome1 GeneDB CDS 5004671 5004694 . + . mRNA SPAC890.03 ; colour "2" ;
chromosome1 GeneDB CDS 5004742 5004835 . + . mRNA SPAC890.03 ; colour "2" ;
chromosome1 GeneDB CDS 5004903 5004952 . + . mRNA SPAC890.03 ; colour "2" ;
chromosome1 GeneDB CDS 5005121 5006971 . + . mRNA SPAC890.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 5004695 5004700 . + . misc_feature unknown_4166 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5004728 5004741 . + . misc_feature unknown_4167 ; colour "6" ; note "ctaatgaatggcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5004836 5004841 . + . misc_feature unknown_4168 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5004883 5004902 . + . misc_feature unknown_4169 ; colour "6" ; note "ctaacaagcatgggttgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5004953 5004958 . + . misc_feature unknown_4170 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5005103 5005120 . + . misc_feature unknown_4171 ; colour "6" ; note "ctaacatttttattaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5006972 5006996 . + . mRNA SPAC890.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC890.03" ; systematic_id "SPAC890.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5007016 5007172 . - . mRNA SPAC890.04c ; ID "SPAC890.04c" ; db_xref "SPD:35/35B12" ; systematic_id "SPAC890.04c" ; gene "SPAC890.04c" ; note "mRNA from AF237708" ;
chromosome1 GeneDB CDS_parts 5007173 5008857 . - . mRNA SPAC890.04c ; db_xref "SPD:35/35B12" ; systematic_id "SPAC890.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR272W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0015630; microtubule cytoskeleton
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0016043; cellular component organization and biogenesis
GO:0042254; ribosome biogenesis" ; gene "SPAC890.04c" ; product "ribosome biogenesis protein Ytm1 (predicted)" ;
chromosome1 GeneDB CDS 5007173 5008344 . - . mRNA SPAC890.04c ; colour "7" ;
chromosome1 GeneDB CDS 5008707 5008857 . - . mRNA SPAC890.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 5008345 5008357 . - . misc_feature unknown_4172 ; colour "6" ; note "ctaactttactag, splice branch and acceptor" ;
chromosome1 GeneDB intron 5008345 5008706 . - . intron SPAC890.04c ; db_xref "SPD:35/35B12" ; systematic_id "SPAC890.04c" ; gene "SPAC890.04c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5008701 5008706 . - . misc_feature unknown_4173 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5009365 5009806 . + . mRNA SPAC890.05 ; ID "SPAC890.05" ; systematic_id "SPAC890.05" ; gene "SPAC890.05" ; note "mRNA from AU010861" ;
chromosome1 GeneDB CDS_parts 5009807 5010661 . + . mRNA SPAC890.05 ; db_xref "SPD:11/11C06" ; systematic_id "SPAC890.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=orthologous to S. cerevisiae YGR280C; date=19700101 ||| term=human PINX1 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0003723; RNA binding" ; gene "SPAC890.05" ; product "ribosome biogenesis protein, G-pathc domain, PINX1 family (predicted)" ;
chromosome1 GeneDB CDS 5009807 5010661 . + . mRNA SPAC890.05 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5010662 5010806 . + . mRNA SPAC890.05 ; ID "SPAC890.05" ; db_xref "SPD:11/11C06" ; systematic_id "SPAC890.05" ; gene "SPAC890.05" ; note "mRNA from AU009538" ;
chromosome1 GeneDB CDS_parts 5011732 5015786 . + . mRNA SPAC890.06 ; systematic_id "SPAC890.06" ; colour "7" ; gene "SPAC890.06" ; note "possible alternative donor for 1st intron at position 10149-10154" ; db_xref "SPD:30/30F01" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER105C and YBL079W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, heart disease; date=20081212 ||| term=human NUP155 ortholog; date=20081212" ; product "nucleoporin Nup157/170 (predicted)" ;
chromosome1 GeneDB CDS 5011732 5011864 . + . mRNA SPAC890.06 ; colour "7" ;
chromosome1 GeneDB CDS 5011916 5012020 . + . mRNA SPAC890.06 ; colour "7" ;
chromosome1 GeneDB CDS 5012077 5015786 . + . mRNA SPAC890.06 ; colour "7" ;
chromosome1 GeneDB misc_feature 5011865 5011870 . + . misc_feature unknown_4174 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5011898 5011915 . + . misc_feature unknown_4175 ; colour "6" ; note "ctaattatttttttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5012021 5012026 . + . misc_feature unknown_4176 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5012057 5012076 . + . misc_feature unknown_4177 ; colour "6" ; note "ctaacttatcatcggtttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5015787 5015960 . + . mRNA SPAC890.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC890.06" ; systematic_id "SPAC890.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5016020 5017829 . - . mRNA SPAC890.07c ; systematic_id "SPAC890.07c" ; colour "2" ; gene "rmt1 ||| prmt1 ||| SPAC890.07c" ; Alias "rmt1" ; db_xref "SPD:36/36B04" ; synonym "prmt1" ; GO "GO:0005634; nucleus
GO:0016274; protein-arginine N-methyltransferase activity
GO:0006406; mRNA export from nucleus
GO:0019919; peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Pab2; db_xref=PMID:17213188; date=20100826" ; primary_name "rmt1" ; product "type I protein arginine N-methyltransferase Rmt1" ; EC_number "2.1.1.-" ;
chromosome1 GeneDB CDS 5016020 5016026 . - . mRNA SPAC890.07c ; colour "2" ;
chromosome1 GeneDB CDS 5016076 5016215 . - . mRNA SPAC890.07c ; colour "2" ;
chromosome1 GeneDB CDS 5016262 5016596 . - . mRNA SPAC890.07c ; colour "2" ;
chromosome1 GeneDB CDS 5016649 5016943 . - . mRNA SPAC890.07c ; colour "2" ;
chromosome1 GeneDB CDS 5016994 5017059 . - . mRNA SPAC890.07c ; colour "2" ;
chromosome1 GeneDB CDS 5017138 5017252 . - . mRNA SPAC890.07c ; colour "2" ;
chromosome1 GeneDB CDS 5017421 5017433 . - . mRNA SPAC890.07c ; colour "2" ;
chromosome1 GeneDB CDS 5017700 5017703 . - . mRNA SPAC890.07c ; colour "2" ;
chromosome1 GeneDB CDS 5017782 5017829 . - . mRNA SPAC890.07c ; colour "2" ;
chromosome1 GeneDB misc_feature 5016216 5016233 . - . misc_feature unknown_4178 ; colour "6" ; note "ctaacaccacttctatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5016256 5016261 . - . misc_feature unknown_4179 ; colour "6" ; note "gtacat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5016597 5016615 . - . misc_feature unknown_4180 ; colour "6" ; note "ctaaccattcatttctcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5016643 5016648 . - . misc_feature unknown_4181 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5016944 5016957 . - . misc_feature unknown_4182 ; colour "6" ; note "ttaacgaaacgtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 5016944 5016993 . - . intron SPAC890.07c ; Alias "rmt1" ; db_xref "SPD:36/36B04" ; systematic_id "SPAC890.07c" ; primary_name "rmt1" ; gene "rmt1 ||| prmt1 ||| SPAC890.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5016988 5016993 . - . misc_feature unknown_4183 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5017060 5017071 . - . misc_feature unknown_4184 ; colour "6" ; note "ctaacctgttag, splice branch and acceptor" ;
chromosome1 GeneDB intron 5017060 5017137 . - . intron SPAC890.07c ; Alias "rmt1" ; db_xref "SPD:36/36B04" ; systematic_id "SPAC890.07c" ; primary_name "rmt1" ; gene "rmt1 ||| prmt1 ||| SPAC890.07c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5017132 5017137 . - . misc_feature unknown_4185 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5017253 5017263 . - . misc_feature unknown_4186 ; colour "6" ; note "ctaattttcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5017415 5017420 . - . misc_feature unknown_4187 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5017434 5017444 . - . misc_feature unknown_4188 ; colour "6" ; note "ctaataaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5017694 5017699 . - . misc_feature unknown_4189 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5017704 5017717 . - . misc_feature unknown_4190 ; colour "6" ; note "ttaactaaacatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5017776 5017781 . - . misc_feature unknown_4191 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5018104 5018125 . + . mRNA SPAC890.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC890.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5018126 5018587 . + . mRNA SPAC890.08 ; systematic_id "SPAC890.08" ; colour "7" ; gene "rpl31 ||| SPAC890.08" ; Alias "rpl31" ; db_xref "SPD:04/04B08" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL075W and YLR406C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl31" ; product "60S ribosomal protein L31 (predicted)" ;
chromosome1 GeneDB CDS 5018126 5018272 . + . mRNA SPAC890.08 ; colour "7" ;
chromosome1 GeneDB CDS 5018393 5018587 . + . mRNA SPAC890.08 ; colour "7" ;
chromosome1 GeneDB misc_feature 5018273 5018278 . + . misc_feature unknown_4192 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 5018273 5018392 . + . intron SPAC890.08 ; Alias "rpl31" ; db_xref "SPD:04/04B08" ; systematic_id "SPAC890.08" ; primary_name "rpl31" ; gene "rpl31 ||| SPAC890.08" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5018374 5018392 . + . misc_feature unknown_4193 ; colour "6" ; note "ctaactgtattttttatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5018588 5018655 . + . mRNA SPAC890.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC890.08" ; systematic_id "SPAC890.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5018722 5019072 . + . misc_RNA SPNCRNA.258 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.258" ; synonym "SPNG950" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5019371 5019491 . + . mRNA SPAC22E12.01 ; Alias "SPAC890.09" ; ID "SPAC22E12.01" ; systematic_id "SPAC22E12.01" ; primary_name "SPAC890.09" ; gene "SPAC890.09 ||| SPAC22E12.01" ; note "mRNA from AU009596" ;
chromosome1 GeneDB CDS_parts 5019492 5020667 . + . mRNA SPAC22E12.01 ; systematic_id "SPAC22E12.01" ; colour "7" ; gene "SPAC890.09 ||| SPAC22E12.01" ; Alias "SPAC890.09" ; db_xref "SPD:18/18F06" ; synonym "SPAC890.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0035436; triose phosphate transmembrane transport
GO:0071917; triose-phosphate transmembrane transporter activity" ; primary_name "SPAC890.09" ; product "triose phosphate transporter (predicted)" ;
chromosome1 GeneDB CDS 5019492 5019670 . + . mRNA SPAC22E12.01 ; colour "7" ;
chromosome1 GeneDB CDS 5019722 5020667 . + . mRNA SPAC22E12.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 5019671 5019676 . + . misc_feature unknown_4194 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB intron 5019671 5019721 . + . intron SPAC22E12.01 ; Alias "SPAC890.09" ; db_xref "SPD:18/18F06" ; systematic_id "SPAC22E12.01" ; primary_name "SPAC890.09" ; gene "SPAC890.09 ||| SPAC22E12.01" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5019702 5019721 . + . misc_feature unknown_4195 ; colour "6" ; note "ctaactggtattgtttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5020227 5020316 . + . misc_feature unknown_4196 ; note "nominal overlap with cosmid SPAC890 and cosmid SPAC22E12" ;
chromosome1 GeneDB 3'-UTR 5020668 5021349 . + . mRNA SPAC22E12.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.01" ; systematic_id "SPAC22E12.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 5021560 5021908 . + . LTR unknown_4197 ; colour "4" ; note "solo tf2 type LTR" ;
chromosome1 GeneDB 5'-UTR 5022119 5022183 . + . mRNA SPAC22E12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5022184 5023077 . + . mRNA SPAC22E12.02 ; db_xref "SPD:12/12B11" ; systematic_id "SPAC22E12.02" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human RBM7 ortholog; date=20100301" ; colour "10" ; gene "SPAC22E12.02" ; product "RNA-binding protein" ;
chromosome1 GeneDB CDS 5022184 5022491 . + . mRNA SPAC22E12.02 ; colour "10" ;
chromosome1 GeneDB CDS 5022726 5023077 . + . mRNA SPAC22E12.02 ; colour "10" ;
chromosome1 GeneDB misc_feature 5022492 5022497 . + . misc_feature unknown_4198 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 5022706 5022725 . + . misc_feature unknown_4199 ; colour "2" ; note "splice branch and acceptor sequence, ctaacatgtagtttt ctag" ;
chromosome1 GeneDB 3'-UTR 5022781 5023078 . - . mRNA SPAC22E12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.03c" ; systematic_id "SPAC22E12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5023078 5024044 . + . mRNA SPAC22E12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.02" ; systematic_id "SPAC22E12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5023079 5023752 . - . mRNA SPAC22E12.03c ; db_xref "SPD:07/07G07" ; systematic_id "SPAC22E12.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Parkinson's disease; db_xref=PMID:17138626; date=20061211 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human PARK7 ortholog; date=20091005 ||| term=disease associated, neurological disorders; date=20100621" ; colour "10" ; gene "SPAC22E12.03c" ; product "ThiJ domain protein" ;
chromosome1 GeneDB CDS 5023079 5023175 . - . mRNA SPAC22E12.03c ; colour "10" ;
chromosome1 GeneDB CDS 5023274 5023752 . - . mRNA SPAC22E12.03c ; colour "10" ;
chromosome1 GeneDB misc_feature 5023176 5023195 . - . misc_feature unknown_4200 ; colour "2" ; note "splice branch and acceptor sequence, ctaacatgttctttc attag" ;
chromosome1 GeneDB misc_feature 5023268 5023273 . - . misc_feature unknown_4201 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB 5'-UTR 5023751 5023824 . - . mRNA SPAC22E12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5023945 5024116 . + . misc_RNA SPNCRNA.52 ; Alias "prl52" ; db_xref "EMBL:AB084864 ||| PMID:12597277" ; systematic_id "SPNCRNA.52" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl52" ; gene "prl52 ||| SPNCRNA.52" ; product "non-coding RNA, poly(A) bearing (predicted)" ;
chromosome1 GeneDB 5'-UTR 5024816 5024935 . + . mRNA SPAC22E12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5024936 5026036 . + . mRNA SPAC22E12.04 ; systematic_id "SPAC22E12.04" ; colour "2" ; gene "ccs1 ||| SPAC22E12.04" ; Alias "ccs1" ; db_xref "SPD:17/17C04" ; synonym "pccs" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR038C; date=19700101 ||| term=complementation, functionally complements S. cerevisiae YMR038C; db_xref=PMID:15107426; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0016532; superoxide dismutase copper chaperone activity
GO:0016531; copper chaperone activity
GO:0006878; copper ion homeostasis
GO:0071248; cellular response to metal ion
GO:0005743; mitochondrial inner membrane
GO:0005829; cytosol" ; primary_name "ccs1" ; product "superoxide dismutase copper chaperone Ccs1" ;
chromosome1 GeneDB CDS 5024936 5024944 . + . mRNA SPAC22E12.04 ; colour "2" ;
chromosome1 GeneDB CDS 5024997 5025123 . + . mRNA SPAC22E12.04 ; colour "2" ;
chromosome1 GeneDB CDS 5025279 5026036 . + . mRNA SPAC22E12.04 ; colour "2" ;
chromosome1 GeneDB misc_feature 5024945 5024950 . + . misc_feature unknown_4202 ; colour "2" ; note "splice donor sequence, gtatgg" ;
chromosome1 GeneDB misc_feature 5024981 5024996 . + . misc_feature unknown_4203 ; colour "2" ; note "splice branch and acceptor sequence, ctaataaaattttta g" ;
chromosome1 GeneDB misc_feature 5025124 5025129 . + . misc_feature unknown_4204 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 5025262 5025278 . + . misc_feature unknown_4205 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgtagattttc ag" ;
chromosome1 GeneDB 3'-UTR 5026037 5026190 . + . mRNA SPAC22E12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.04" ; systematic_id "SPAC22E12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5026190 5026799 . - . mRNA SPAC22E12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.05c" ; systematic_id "SPAC22E12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5026800 5027407 . - . mRNA SPAC22E12.05c ; systematic_id "SPAC22E12.05c" ; colour "7" ; gene "rer1 ||| SPAC22E12.05c" ; Alias "rer1" ; db_xref "SPD:06/06G09" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0000139; Golgi membrane
GO:0006886; intracellular protein transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0030137; COPI-coated vesicle
GO:0030134; ER to Golgi transport vesicle
GO:0006621; protein retention in ER" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rer1" ; product "Rer1 family protein (predicted)" ;
chromosome1 GeneDB CDS 5026800 5027294 . - . mRNA SPAC22E12.05c ; colour "7" ;
chromosome1 GeneDB CDS 5027348 5027407 . - . mRNA SPAC22E12.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 5027295 5027309 . - . misc_feature unknown_4206 ; colour "2" ; note "splice branch and acceptor sequence, ctaacgtgtttttag" ;
chromosome1 GeneDB misc_feature 5027342 5027347 . - . misc_feature unknown_4207 ; colour "2" ; note "splice donor sequence, gtaaga" ;
chromosome1 GeneDB 5'-UTR 5027406 5027454 . - . mRNA SPAC22E12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5028331 5028999 . - . mRNA SPAC22E12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.06c" ; systematic_id "SPAC22E12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5029000 5029998 . - . mRNA SPAC22E12.06c ; systematic_id "SPAC22E12.06c" ; colour "2" ; gene "gmh3 ||| SPAC22E12.06c" ; Alias "gmh3" ; db_xref "SPD:14/14F03" ; GO "GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0006487; protein amino acid N-linked glycosylation
GO:0042125; protein amino acid galactosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "gmh3" ; product "alpha-1,2-galactosyltransferase Gmh3" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB CDS 5029000 5029998 . - . mRNA SPAC22E12.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5029997 5030426 . - . mRNA SPAC22E12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5031784 5032944 . + . mRNA SPAC22E12.07 ; systematic_id "SPAC22E12.07" ; colour "2" ; gene "rna1 ||| SPAC22E12.07" ; Alias "rna1" ; db_xref "SPD:18/18C11" ; GO "GO:0005737; cytoplasm
GO:0005737; cytoplasm
GO:0031965; nuclear membrane
GO:0031965; nuclear membrane
GO:0005096; GTPase activator activity
GO:0005098; Ran GTPase activator activity
GO:0031291; regulation of Ran GTPase activity
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0051383; kinetochore organization and biogenesis
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8374168; date=19700101 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR235C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rna1" ; product "Ran GAP Rna1" ;
chromosome1 GeneDB CDS 5031784 5032944 . + . mRNA SPAC22E12.07 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5032945 5033228 . + . mRNA SPAC22E12.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.07" ; systematic_id "SPAC22E12.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5033448 5033477 . + . mRNA SPAC22E12.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5033478 5033823 . + . mRNA SPAC22E12.08 ; systematic_id "SPAC22E12.08" ; colour "2" ; gene "rrn10 ||| SPAC22E12.08" ; note "was originally annotated as dubious due to small size, no homology, only identified by splice site" ; Alias "rrn10" ; db_xref "SPD:02/02B04" ; GO "GO:0000500; RNA polymerase I upstream activating factor complex
GO:0005730; nucleolus
GO:0003701; RNA polymerase I transcription factor activity
GO:0000182; rDNA binding
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL025W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "rrn10" ; product "RNA polymerase I upstream activation factor complex subunit Rrn10" ;
chromosome1 GeneDB CDS 5033478 5033603 . + . mRNA SPAC22E12.08 ; colour "2" ;
chromosome1 GeneDB CDS 5033656 5033823 . + . mRNA SPAC22E12.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 5033604 5033609 . + . misc_feature unknown_4208 ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB misc_feature 5033637 5033655 . + . misc_feature unknown_4209 ; note "splice branch and acceptor sequence, ctaatctttttatgtttag" ;
chromosome1 GeneDB 3'-UTR 5033824 5034661 . + . mRNA SPAC22E12.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.08" ; systematic_id "SPAC22E12.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5034275 5034439 . - . mRNA SPAC22E12.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.09c" ; systematic_id "SPAC22E12.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5034440 5036569 . - . mRNA SPAC22E12.09c ; systematic_id "SPAC22E12.09c" ; colour "2" ; db_xref "SPD:33/33F09" ; Alias "krp1" ; synonym "krp" ; GO "GO:0009986; cell surface
GO:0004252; serine-type endopeptidase activity
GO:0071432; peptide mating pheromone maturation involved in cojugation with cellular fusion
GO:0006508; proteolysis
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7813430; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL238W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "krp1" ; product "kexin" ; EC_number "3.4.21.-" ;
chromosome1 GeneDB CDS 5034440 5036569 . - . mRNA SPAC22E12.09c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5036570 5036590 . - . mRNA SPAC22E12.09c ; ID "SPAC22E12.09c" ; db_xref "PMID:18488015" ; systematic_id "SPAC22E12.09c" ; synonym "SPNG957" ;
chromosome1 GeneDB 3'-UTR 5036954 5037207 . - . mRNA SPAC22E12.10c ; Alias "etp1" ; ID "SPAC22E12.10c" ; db_xref "SPD:26/26E08" ; systematic_id "SPAC22E12.10c" ; primary_name "etp1" ; gene "etp1 ||| cox15 ||| SPAC22E12.10c" ; note "mRNA from AU010910" ;
chromosome1 GeneDB CDS_parts 5037208 5039103 . - . mRNA SPAC22E12.10c ; systematic_id "SPAC22E12.10c" ; colour "2" ; gene "etp1 ||| cox15 ||| SPAC22E12.10c" ; Alias "etp1" ; db_xref "SPD:26/26E08" ; synonym "cox15" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, proteolytic cleavage; cv=pt_mod; db_xref=PMID:11841224; date=20060531 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060531 ||| term=disease associated, cardimyopathy; qualifier=N_term; date=20060821 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; date=20060825 ||| term=orthologous to S. cerevisiae YER141W (N-term); date=19700101 ||| term=orthologous to S. cerevisiae YPL252C (C-term); date=19700101 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; GO "GO:0031305; integral to mitochondrial inner membrane
GO:0005743; mitochondrial inner membrane
GO:0051537; 2 iron, 2 sulfur cluster binding
GO:0009055; electron carrier activity
GO:0008535; cytochrome c oxidase complex assembly
GO:0006784; heme a biosynthesis
GO:0022900; electron transport chain
GO:0009055; electron carrier activity" ; primary_name "etp1" ; product "mitochondrial type I [2Fe-2S] ferredoxin Etp1/ cytochrome oxidase cofactor Cox15, fusion" ;
chromosome1 GeneDB CDS 5037208 5037446 . - . mRNA SPAC22E12.10c ; colour "2" ;
chromosome1 GeneDB CDS 5037492 5039103 . - . mRNA SPAC22E12.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5039102 5039150 . - . mRNA SPAC22E12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5039661 5039901 . - . mRNA SPAC22E12.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.11c" ; systematic_id "SPAC22E12.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5039902 5042481 . - . mRNA SPAC22E12.11c ; systematic_id "SPAC22E12.11c" ; colour "2" ; gene "set3 ||| SPAC22E12.11c" ; Alias "set3" ; db_xref "SPD:38/38E02" ; GO "GO:0018024; histone-lysine N-methyltransferase activity
GO:0016571; histone methylation
GO:0006338; chromatin remodeling
GO:0034967; Set3 complex
GO:0070210; Rpd3L-Expanded
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YKR029C and YJL105W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "set3" ; product "histone lysine methyltransferase Set3" ;
chromosome1 GeneDB CDS 5039902 5042481 . - . mRNA SPAC22E12.11c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5042480 5042748 . - . mRNA SPAC22E12.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 5043251 5043589 . + . misc_feature SPAC22E12.12 ; db_xref "SPD:02/02A04" ; systematic_id "SPAC22E12.12" ; controlled_curation "term=dubious; date=19700101 ||| term=compositionally biased ORF; date=19700101" ; colour "6" ; gene "SPAC22E12.12" ; product "dubious" ; note "unsupported by Solexa transcript data so deleted" ;
chromosome1 GeneDB 3'-UTR 5043386 5043796 . - . mRNA SPAC22E12.13c ; Alias "rpl2403" ; ID "SPAC22E12.13c" ; db_xref "SPD:11/11H05" ; systematic_id "SPAC22E12.13c" ; primary_name "rpl2403" ; gene "rpl2403 ||| rpl24-3 ||| SPAC22E12.13c" ; note "mRNA from AU006722" ;
chromosome1 GeneDB misc_feature 5043481 5043486 . + . misc_feature unknown_4210 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 5043514 5043528 . + . misc_feature unknown_4211 ; colour "2" ; note "splice branch and acceptor sequence, ttaatctgcacgtag" ;
chromosome1 GeneDB CDS_parts 5043797 5044672 . - . mRNA SPAC22E12.13c ; systematic_id "SPAC22E12.13c" ; colour "2" ; gene "rpl2403 ||| rpl24-3 ||| SPAC22E12.13c" ; Alias "rpl2403" ; db_xref "SPD:11/11H05" ; synonym "rpl24-3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL031C and YGR148C and YLR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl2403" ; product "60S ribosomal protein L24-3 (L30)" ;
chromosome1 GeneDB CDS 5043797 5044231 . - . mRNA SPAC22E12.13c ; colour "2" ;
chromosome1 GeneDB CDS 5044479 5044617 . - . mRNA SPAC22E12.13c ; colour "2" ;
chromosome1 GeneDB CDS 5044668 5044672 . - . mRNA SPAC22E12.13c ; colour "2" ;
chromosome1 GeneDB misc_feature 5044232 5044248 . - . misc_feature unknown_4212 ; colour "2" ; note "splice branch and acceptor sequence, ctaacttcaatgtct ag" ;
chromosome1 GeneDB misc_feature 5044473 5044478 . - . misc_feature unknown_4213 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 5044618 5044632 . - . misc_feature unknown_4214 ; colour "2" ; note "splice branch and acceptor sequence, ctaaccggaaattta g" ;
chromosome1 GeneDB misc_feature 5044662 5044667 . - . misc_feature unknown_4215 ; colour "2" ; note "splice donor sequence, gtttgt" ;
chromosome1 GeneDB 5'-UTR 5044671 5044723 . - . mRNA SPAC22E12.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB tRNA 5045132 5045204 . - . tRNA SPATRNAARG.03 ; systematic_id "SPATRNAARG.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033440; ACG codon-amino acid adaptor activity" ; product "tRNA Arginine" ; note "tRNA Arg anticodon ACG, Cove score 54.83" ;
chromosome1 GeneDB 3'-UTR 5045824 5046576 . - . mRNA SPAC22E12.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.14c" ; systematic_id "SPAC22E12.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5046577 5048517 . - . mRNA SPAC22E12.14c ; systematic_id "SPAC22E12.14c" ; colour "2" ; db_xref "SPD:26/26H06" ; Alias "sck2" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0001320; age-dependent response to reactive oxygen species involved in chronological cell ageing
GO:0019933; cAMP-mediated signaling
GO:0006468; protein amino acid phosphorylation
GO:0031137; regulation of conjugation with cellular fusion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR205W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9560431; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20090820 ||| term=human AKT1 and AKT2 ortholog; date=20090820 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100414" ; primary_name "sck2" ; product "serine/threonine protein kinase Sck2" ;
chromosome1 GeneDB CDS 5046577 5048517 . - . mRNA SPAC22E12.14c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5048516 5049013 . - . mRNA SPAC22E12.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 5049001 5049365 . + . misc_feature unknown_4216 ; note "previously annotated as dubious SPAC22E12.15, but dubious splice prediction, and not confirmed by transcriptome data" ;
chromosome1 GeneDB 3'-UTR 5049232 5049408 . - . mRNA SPAC22E12.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.16c" ; systematic_id "SPAC22E12.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5049409 5052259 . - . mRNA SPAC22E12.16c ; systematic_id "SPAC22E12.16c" ; colour "2" ; gene "pik1 ||| SPAC22E12.16c" ; Alias "pik1" ; db_xref "SPD:29/29F03" ; GO "GO:0005794; Golgi apparatus
GO:0005634; nucleus
GO:0004430; 1-phosphatidylinositol 4-kinase activity
GO:0005515; protein binding
GO:0006661; phosphatidylinositol biosynthetic process
GO:0046854; phosphoinositide phosphorylation
GO:0034613; cellular protein localization
GO:0007165; signal transduction" ; controlled_curation "term=orthologous to S. cerevisiae YNL267W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "pik1" ; product "1-phosphatidylinositol 4-kinase Pik1" ; EC_number "2.7.1.67" ;
chromosome1 GeneDB CDS 5049409 5051779 . - . mRNA SPAC22E12.16c ; colour "2" ;
chromosome1 GeneDB CDS 5051977 5052018 . - . mRNA SPAC22E12.16c ; colour "2" ;
chromosome1 GeneDB CDS 5052068 5052186 . - . mRNA SPAC22E12.16c ; colour "2" ;
chromosome1 GeneDB CDS 5052236 5052259 . - . mRNA SPAC22E12.16c ; colour "2" ;
chromosome1 GeneDB misc_feature 5051780 5051796 . - . misc_feature unknown_4217 ; colour "2" ; note "splice branch and acceptor sequence, ctaatatcatactgt ag" ;
chromosome1 GeneDB misc_feature 5051971 5051976 . - . misc_feature unknown_4218 ; colour "2" ; note "splice donor sequence, gtacgt" ;
chromosome1 GeneDB misc_feature 5052019 5052032 . - . misc_feature unknown_4219 ; colour "2" ; note "splice branch and acceptor sequence, ctaacacatattag" ;
chromosome1 GeneDB misc_feature 5052062 5052067 . - . misc_feature unknown_4220 ; colour "2" ; note "splice donor sequence, gtatgt" ;
chromosome1 GeneDB misc_feature 5052187 5052202 . - . misc_feature unknown_4221 ; colour "2" ; note "splice branch and acceptor sequence, ttaacgctatttcta g" ;
chromosome1 GeneDB misc_feature 5052230 5052235 . - . misc_feature unknown_4222 ; colour "2" ; note "splice donor sequence, gtatga" ;
chromosome1 GeneDB 5'-UTR 5052258 5052370 . - . mRNA SPAC22E12.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5052648 5053106 . - . mRNA SPAC22E12.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.17c" ; systematic_id "SPAC22E12.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5053107 5054673 . - . mRNA SPAC22E12.17c ; systematic_id "SPAC22E12.17c" ; colour "7" ; gene "glo3 ||| SPAC22E12.17c" ; Alias "glo3" ; db_xref "SPD:45/45B05" ; GO "GO:0030126; COPI vesicle coat
GO:0030137; COPI-coated vesicle
GO:0005793; ER-Golgi intermediate compartment
GO:0008060; ARF GTPase activator activity
GO:0048205; COPI coating of Golgi vesicle
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YER122C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "glo3" ; product "ARF GTPase activating protein (predicted)" ;
chromosome1 GeneDB CDS 5053107 5054382 . - . mRNA SPAC22E12.17c ; colour "7" ;
chromosome1 GeneDB CDS 5054436 5054554 . - . mRNA SPAC22E12.17c ; colour "7" ;
chromosome1 GeneDB CDS 5054608 5054673 . - . mRNA SPAC22E12.17c ; colour "7" ;
chromosome1 GeneDB intron 5054374 5054435 . - . intron SPAC22E12.17c ; Alias "glo3" ; db_xref "SPD:45/45B05" ; systematic_id "SPAC22E12.17c" ; primary_name "glo3" ; gene "glo3 ||| SPAC22E12.17c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5054383 5054412 . - . misc_feature unknown_4223 ; colour "2" ; note "splice branch and acceptor sequence, ttaatatgttgggaa caatttgcttactag" ;
chromosome1 GeneDB misc_feature 5054430 5054435 . - . misc_feature unknown_4224 ; colour "2" ; note "splice donor sequence, gtaagg" ;
chromosome1 GeneDB misc_feature 5054555 5054566 . - . misc_feature unknown_4225 ; colour "2" ; note "splice branch and acceptor sequence, ctaattgtgtag" ;
chromosome1 GeneDB intron 5054555 5054607 . - . intron SPAC22E12.17c ; Alias "glo3" ; db_xref "SPD:45/45B05" ; systematic_id "SPAC22E12.17c" ; primary_name "glo3" ; gene "glo3 ||| SPAC22E12.17c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5054602 5054607 . - . misc_feature unknown_4226 ; colour "2" ; note "splice donor sequence, gttggc" ;
chromosome1 GeneDB 5'-UTR 5054672 5054683 . - . mRNA SPAC22E12.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5055175 5055180 . + . mRNA SPAC22E12.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5055181 5056230 . + . mRNA SPAC22E12.18 ; db_xref "SPD:16/16A06" ; systematic_id "SPAC22E12.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR287C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005737; cytoplasm" ; gene "SPAC22E12.18" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 5055181 5055217 . + . mRNA SPAC22E12.18 ; colour "10" ;
chromosome1 GeneDB CDS 5055257 5056230 . + . mRNA SPAC22E12.18 ; colour "10" ;
chromosome1 GeneDB misc_feature 5055218 5055223 . + . misc_feature unknown_4227 ; colour "2" ; note "splice donor sequence, gtacga" ;
chromosome1 GeneDB misc_feature 5055246 5055256 . + . misc_feature unknown_4228 ; colour "2" ; note "splice branch and acceptor sequence, ctaatttgtag" ;
chromosome1 GeneDB 3'-UTR 5056231 5056278 . + . mRNA SPAC22E12.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.18" ; systematic_id "SPAC22E12.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5056658 5056707 . + . mRNA SPAC22E12.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC22E12.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5056708 5058693 . + . mRNA SPAC22E12.19 ; systematic_id "SPAC22E12.19" ; colour "2" ; gene "SPAC2E12.01 ||| SPAC22E12.19 ||| snt1" ; Alias "snt1" ; db_xref "SPD:27/27C07" ; synonym "SPAC2E12.01" ; GO "GO:0034967; Set3 complex
GO:0003677; DNA binding
GO:0016575; histone deacetylation
GO:0006338; chromatin remodeling
GO:0070210; Rpd3L-Expanded" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=SANT subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YCR033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snt1" ; product "Set3 complex subunit Snt1" ;
chromosome1 GeneDB CDS 5056708 5058693 . + . mRNA SPAC22E12.19 ; colour "2" ;
chromosome1 GeneDB misc_feature 5057348 5057398 . + . misc_feature unknown_4229 ; note "nominal overlap with cosmid SPAC2E12 and SPAC22E12" ;
chromosome1 GeneDB 3'-UTR 5058694 5058804 . + . mRNA SPAC22E12.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC22E12.19" ; systematic_id "SPAC22E12.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5058865 5059013 . + . misc_RNA SPNCRNA.91 ; systematic_id "SPNCRNA.91" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.91" ; product "non-coding RNA (predicted)" ; note "mRNA from spc11972 1 149" ;
chromosome1 GeneDB 5'-UTR 5059273 5059474 . + . mRNA SPAC2E12.02 ; Alias "hsf1" ; ID "SPAC2E12.02" ; systematic_id "SPAC2E12.02" ; primary_name "hsf1" ; gene "hsf1 ||| hstf ||| hsf ||| SPAC2E12.02" ; note "mRNA from SPHSF" ;
chromosome1 GeneDB CDS_parts 5059475 5061646 . + . mRNA SPAC2E12.02 ; systematic_id "SPAC2E12.02" ; colour "2" ; gene "hsf1 ||| hstf ||| hsf ||| SPAC2E12.02" ; Alias "hsf1" ; db_xref "SPD:37/37G06" ; synonym "hstf ||| hsf" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression induced by heat shock; cv=gene_ex; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YGL073W and YHR206W and YOR140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=DNA binding specificity, binds HSE 5'-NGAANNTTCNNGAAN-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates ntp1; cv=gene_ex; date=20100302 ||| term=gene expression, transcriptionally regulates pss1; cv=gene_ex; date=20100302" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0033554; cellular response to stress" ; primary_name "hsf1" ; product "transcription factor Hsf1" ;
chromosome1 GeneDB CDS 5059475 5059802 . + . mRNA SPAC2E12.02 ; colour "2" ;
chromosome1 GeneDB CDS 5060145 5061646 . + . mRNA SPAC2E12.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 5059803 5059808 . + . misc_feature unknown_4230 ; colour "2" ; note "splice donor sequence, gtaagt" ;
chromosome1 GeneDB intron 5059803 5060144 . + . intron SPAC2E12.02 ; Alias "hsf1" ; db_xref "SPD:37/37G06" ; systematic_id "SPAC2E12.02" ; primary_name "hsf1" ; gene "hsf1 ||| hstf ||| hsf ||| SPAC2E12.02" ; note "confirmed by mRNA SPHSF" ;
chromosome1 GeneDB misc_feature 5060131 5060144 . + . misc_feature unknown_4231 ; colour "2" ; note "splice branch and acceptor sequence, ctaactttttacag" ;
chromosome1 GeneDB 3'-UTR 5061647 5062056 . + . mRNA SPAC2E12.02 ; Alias "hsf1" ; ID "SPAC2E12.02" ; db_xref "SPD:37/37G06" ; systematic_id "SPAC2E12.02" ; primary_name "hsf1" ; gene "hsf1 ||| hstf ||| hsf ||| SPAC2E12.02" ; note "mRNA from AU008781" ;
chromosome1 GeneDB 3'-UTR 5062104 5062197 . - . mRNA SPAC2E12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2E12.03c" ; systematic_id "SPAC2E12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5062198 5063049 . - . mRNA SPAC2E12.03c ; db_xref "SPD:11/11B11" ; systematic_id "SPAC2E12.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PQ loop; date=19700101 ||| term=orthologous to S. cerevisiae YBR147W and YDR090C and YDR352W and YOL092W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC2E12.03c" ; product "PQ loop protein" ;
chromosome1 GeneDB CDS 5062198 5063049 . - . mRNA SPAC2E12.03c ; colour "10" ;
chromosome1 GeneDB 5'-UTR 5063258 5064304 . + . mRNA SPAC2E12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2E12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5064305 5066231 . + . mRNA SPAC2E12.05 ; Alias "wtf1" ; systematic_id "SPAC2E12.05" ; pseudo "_no_value" ; colour "13" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; gene "wtf1 ||| SPAC2E12.05" ; primary_name "wtf1" ; product "pseudogene wtf element Wtf1" ;
chromosome1 GeneDB CDS 5064305 5066231 . + . mRNA SPAC2E12.05 ; colour "13" ;
chromosome1 GeneDB misc_feature 5066140 5066231 . + . misc_feature unknown_4232 ; note "nominal overlap with cosmid c1006" ;
chromosome1 GeneDB misc_feature 5066140 5066231 . - . misc_feature unknown_4233 ; note "nominal overlap with cosmid c2E12" ;
chromosome1 GeneDB LTR 5066415 5066762 . - . LTR unknown_4234 ; note "TF1 type LTR" ;
chromosome1 GeneDB 5'-UTR 5067551 5067839 . + . mRNA SPAC1006.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1006.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5067840 5069195 . + . mRNA SPAC1006.01 ; systematic_id "SPAC1006.01" ; colour "2" ; gene "psp3 ||| SPAC1006.01" ; Alias "psp3" ; db_xref "SPD:21/21A07" ; GO "GO:0007039; vacuolar protein catabolic process
GO:0000328; fungal-type vacuole lumen
GO:0004252; serine-type endopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=name description, Protease S. Pombe; db_xref=PMID:11115118; date=20100606" ; primary_name "psp3" ; product "vacuolar serine protease Psp3 (predicted)" ; EC_number "3.4.24.-" ;
chromosome1 GeneDB CDS 5067840 5069195 . + . mRNA SPAC1006.01 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5069196 5069307 . + . mRNA SPAC1006.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1006.01" ; systematic_id "SPAC1006.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5069587 5069695 . + . mRNA SPAC1006.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1006.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5069696 5070802 . + . mRNA SPAC1006.02 ; systematic_id "SPAC1006.02" ; colour "2" ; gene "asa1 ||| SPAC1006.02" ; Alias "asa1" ; db_xref "SPD:17/17D08" ; GO "GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR085C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human GNB1L ortholog; date=20081217" ; primary_name "asa1" ; product "Astra associated protein 1 Asa1" ;
chromosome1 GeneDB CDS 5069696 5070802 . + . mRNA SPAC1006.02 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5070803 5070901 . + . mRNA SPAC1006.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1006.02" ; systematic_id "SPAC1006.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5071016 5071211 . - . mRNA SPAC1006.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1006.03c" ; systematic_id "SPAC1006.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5071212 5073872 . - . mRNA SPAC1006.03c ; db_xref "SPD:38/38H01" ; systematic_id "SPAC1006.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=20060226 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CCDc131 ortholog; date=20100704" ; colour "10" ; gene "SPAC1006.03c" ; product "human CCDC131 homolog" ;
chromosome1 GeneDB CDS 5071212 5071417 . - . mRNA SPAC1006.03c ; colour "10" ;
chromosome1 GeneDB CDS 5071456 5073188 . - . mRNA SPAC1006.03c ; colour "10" ;
chromosome1 GeneDB CDS 5073389 5073449 . - . mRNA SPAC1006.03c ; colour "10" ;
chromosome1 GeneDB CDS 5073728 5073872 . - . mRNA SPAC1006.03c ; colour "10" ;
chromosome1 GeneDB misc_feature 5071418 5071432 . - . misc_feature unknown_4235 ; colour "6" ; note "ctaacctttatacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5071450 5071455 . - . misc_feature unknown_4236 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5073189 5073200 . - . misc_feature unknown_4237 ; colour "6" ; note "ctaacacactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5073383 5073388 . - . misc_feature unknown_4238 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5073450 5073461 . - . misc_feature unknown_4239 ; colour "6" ; note "ttaacagtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5073722 5073727 . - . misc_feature unknown_4240 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 5075136 5077994 . - . mRNA SPAC1006.04c ; systematic_id "SPAC1006.04c" ; colour "8" ; gene "mcp3 ||| SPAC1006.04c ||| mug7" ; Alias "mcp3" ; db_xref "SPD:29/29F06" ; synonym "mug7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:12161753; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=19700101" ; GO "GO:0007126; meiosis" ; primary_name "mcp3" ; product "sequence orphan" ; reserved_name "mcp3" ;
chromosome1 GeneDB CDS 5075136 5077994 . - . mRNA SPAC1006.04c ; colour "8" ;
chromosome1 GeneDB 3'-UTR 5078436 5079185 . - . mRNA SPAC1006.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1006.05c" ; systematic_id "SPAC1006.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5079186 5080376 . - . mRNA SPAC1006.05c ; systematic_id "SPAC1006.05c" ; colour "2" ; gene "och1 ||| SPAC1006.05c" ; note "C12N15/09,C07K14/00,C07K14/39,C12N1/00,C12N1/15,C12N1/19,C12N1/21,C12N5/10,C12N9/10,C12P21/02//(C12N15/09,C12R1:645),(C12N1/00,C12R1:645),(C12N9/10,C12R1:645), (C12P21/02,C12R1:645),C12N15/00,C12N5/00, (C12N15/00, C12R1:645)" ; Alias "och1" ; db_xref "SPD:17/17C05" ; GO "GO:0000009; alpha-1,6-mannosyltransferase activity
GO:0006491; N-glycan processing
GO:0000032; cell wall mannoprotein biosynthesis
GO:0000136; alpha-1,6-mannosyltransferase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression induced by salt stress; db_xref=PMID:12784644; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YGL038C and YJR075W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "och1" ; product "alpha-1,6-mannosyltransferase Och1" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB CDS 5079186 5080376 . - . mRNA SPAC1006.05c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5080377 5080499 . - . mRNA SPAC1006.05c ; Alias "och1" ; ID "SPAC1006.05c" ; systematic_id "SPAC1006.05c" ; primary_name "och1" ; gene "och1 ||| SPAC1006.05c" ; note "mRNA from AU011902" ;
chromosome1 GeneDB 5'-UTR 5080753 5081104 . + . mRNA SPAC1006.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1006.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5081105 5084680 . + . mRNA SPAC1006.06 ; systematic_id "SPAC1006.06" ; colour "2" ; gene "rgf2 ||| SPAC1006.06" ; Alias "rgf2" ; db_xref "SPD:30/30E10" ; GO "GO:0000935; barrier septum
GO:0051285; cell cortex of cell tip
GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0005515; protein binding
GO:0051666; actin cortical patch localization
GO:0009272; fungal-type cell wall biogenesis
GO:0032319; regulation of Rho GTPase activity
GO:0035023; regulation of Rho protein signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16324155; date=20060413 ||| term=pleckstrin homology domain; date=20060413 ||| term=orthologous to S. cerevisiae YGR070W and YLR371W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human ARHGEF12 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "rgf2" ; product "RhoGEF Rgf2" ;
chromosome1 GeneDB CDS 5081105 5083607 . + . mRNA SPAC1006.06 ; colour "2" ;
chromosome1 GeneDB CDS 5083663 5084084 . + . mRNA SPAC1006.06 ; colour "2" ;
chromosome1 GeneDB CDS 5084129 5084680 . + . mRNA SPAC1006.06 ; colour "2" ;
chromosome1 GeneDB misc_feature 5083608 5083613 . + . misc_feature unknown_4241 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5083648 5083662 . + . misc_feature unknown_4242 ; colour "6" ; note "ttaacagctctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5084085 5084090 . + . misc_feature unknown_4243 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5084114 5084128 . + . misc_feature unknown_4244 ; colour "6" ; note "ctaacatttttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5084681 5085036 . + . mRNA SPAC1006.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1006.06" ; systematic_id "SPAC1006.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5085532 5085562 . + . mRNA SPAC1006.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1006.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5085563 5086741 . + . mRNA SPAC1006.07 ; systematic_id "SPAC1006.07" ; colour "7" ; gene "SPAC1006.07" ; obsolete_name "tif1" ; db_xref "SPD:32/32F01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YKR059W and YJL138C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human EIF4A2 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; GO "GO:0003743; translation initiation factor activity
GO:0016281; eukaryotic translation initiation factor 4F complex
GO:0006413; translational initiation
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding" ; product "translation initiation factor eIF4A (predicted)" ;
chromosome1 GeneDB CDS 5085563 5086741 . + . mRNA SPAC1006.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5086742 5087031 . + . mRNA SPAC1006.07 ; ID "SPAC1006.07" ; db_xref "SPD:32/32F01" ; systematic_id "SPAC1006.07" ; gene "SPAC1006.07" ; note "mRNA from AU008522" ;
chromosome1 GeneDB 5'-UTR 5088008 5088088 . + . mRNA SPAC1006.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1006.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5088089 5089326 . + . mRNA SPAC1006.08 ; systematic_id "SPAC1006.08" ; colour "2" ; db_xref "SPD:32/32F11" ; Alias "etd1" ; GO "GO:0051285; cell cortex of cell tip
GO:0031097; medial cortex
GO:0031031; positive regulation of septation initiation signaling
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15933715; date=19700101 ||| term=phenotype, sensitive to cold; qualifier=deletion; db_xref=PMID:19736319; date=20101122 ||| term=phenotype, viable at high temperature; qualifier=deletion; db_xref=PMID:19736319; date=20101122 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:15933715; allele=edt1-1; cv=phenotype; date=20100630 ||| term=phenotype, multinucleate; db_xref=PMID:17307401; date=20100705 ||| term=phenotype, cell morphology, swollen cells; db_xref=PMID:17307401; date=20100705 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=species distribution, no apparent orthologs; date=19700101" ; primary_name "etd1" ; product "ethanol-hypersensitive mutant protein Etd1" ;
chromosome1 GeneDB CDS 5088089 5088998 . + . mRNA SPAC1006.08 ; colour "2" ;
chromosome1 GeneDB CDS 5089061 5089326 . + . mRNA SPAC1006.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 5088999 5089004 . + . misc_feature unknown_4245 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5089041 5089060 . + . misc_feature unknown_4246 ; colour "6" ; note "ctaactaaaaacacaaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5089327 5089492 . + . mRNA SPAC1006.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1006.08" ; systematic_id "SPAC1006.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5089826 5090440 . + . mRNA SPAC1006.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1006.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5090441 5094751 . + . mRNA SPAC1006.09 ; systematic_id "SPAC1006.09" ; colour "2" ; gene "win1 ||| SPAC1006.09 ||| SPAC1250.06c ||| SPAPJ730.01" ; Alias "win1" ; db_xref "SPD:48/48G03" ; synonym "SPAC1250.06c ||| SPAPJ730.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:3442828; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=orthologous to S. cerevisiae YCR073C and YNR031C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Wis1; qualifier=phosphorylates|activates; db_xref=PMID:9693384; date=20100427" ; GO "GO:0007346; regulation of progression through mitotic cell cycle
GO:0031098; stress-activated protein kinase signaling pathway
GO:0004709; MAP kinase kinase kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005515; protein binding
GO:0000186; activation of MAPKK activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "win1" ; product "MAP kinase kinase kinase Win1" ;
chromosome1 GeneDB CDS 5090441 5094751 . + . mRNA SPAC1006.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 5092438 5092538 . + . misc_feature unknown_4247 ; note "nominal overlap with SPAC1006 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 5094608 5094708 . + . misc_feature unknown_4248 ; note "nominal overlap with SPAC1250 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 5094752 5094829 . + . mRNA SPAC1006.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1006.09" ; systematic_id "SPAC1006.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5095162 5095210 . - . mRNA SPAC1250.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1250.05" ; systematic_id "SPAC1250.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5095211 5095810 . - . mRNA SPAC1250.05 ; systematic_id "SPAC1250.05" ; colour "7" ; gene "rpl3002 ||| rpl30-2 ||| rpl30 ||| SPAC1250.05" ; Alias "rpl3002" ; db_xref "SPD:31/31F05" ; synonym "rpl30-2 ||| rpl30" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0006364; rRNA processing" ; primary_name "rpl3002" ; product "60S ribosomal protein L30 (predicted)" ;
chromosome1 GeneDB CDS 5095211 5095301 . - . mRNA SPAC1250.05 ; colour "7" ;
chromosome1 GeneDB CDS 5095548 5095810 . - . mRNA SPAC1250.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 5095302 5095316 . - . misc_feature unknown_4249 ; colour "6" ; note "ctaactgttttcaag, splice branch and acceptor" ;
chromosome1 GeneDB intron 5095302 5095547 . - . intron SPAC1250.05 ; Alias "rpl3002" ; db_xref "SPD:31/31F05" ; systematic_id "SPAC1250.05" ; primary_name "rpl3002" ; gene "rpl3002 ||| rpl30-2 ||| rpl30 ||| SPAC1250.05" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5095542 5095547 . - . misc_feature unknown_4250 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5095809 5095875 . - . mRNA SPAC1250.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1250.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB repeat_region 5096443 5096469 . - . repeat_region unknown_4251 ; note "(a)27" ;
chromosome1 GeneDB 5'-UTR 5096867 5097112 . + . mRNA SPAC1250.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1250.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5097113 5097439 . + . mRNA SPAC1250.04c ; systematic_id "SPAC1250.04c" ; colour "2" ; gene "atl1 ||| SPAC1250.04c" ; note "ribonuclease domain present in other eukaryotic homologs is missing" ; Alias "atl1" ; db_xref "SPD:01/01G07" ; GO "GO:0005634; nucleus
GO:0032132; O6-alkylguanine-DNA binding
GO:0003684; damaged DNA binding
GO:0003908; methylated-DNA-[protein]-cysteine S- methyltransferase activity
GO:0006307; DNA dealkylation
GO:0006307; DNA dealkylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL200C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atl1" ; product "alkyltransferase-like protein Atl1" ;
chromosome1 GeneDB CDS 5097113 5097439 . + . mRNA SPAC1250.04c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5097440 5097580 . + . mRNA SPAC1250.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1250.04c" ; systematic_id "SPAC1250.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5097690 5098186 . - . mRNA SPAC1250.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1250.03" ; systematic_id "SPAC1250.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5097850 5098212 . - . mRNA SPAC1250.07 ; Alias "sfc7" ; systematic_id "SPAC1250.07" ; colour "7" ; controlled_curation "term=orthologous to S. cerevisiae YOR110W; db_xref=PMID:17409385; date=20070524 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=warning, new gene; db_xref=PMID:17409385; date=20070412 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; date=20100605" ; GO "GO:0003709; RNA polymerase III transcription factor activity
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0000127; transcription factor TFIIIC complex" ; gene "SPAC1250.07 ||| sfc7" ; primary_name "sfc7" ; product "TFIIIC subunit Sfc7 (predicted)" ;
chromosome1 GeneDB CDS 5097850 5098212 . - . mRNA SPAC1250.07 ; colour "7" ;
chromosome1 GeneDB CDS_parts 5098187 5098816 . - . mRNA SPAC1250.03 ; systematic_id "SPAC1250.03" ; colour "7" ; gene "ubc14 ||| SPAC1250.03" ; Alias "ubc14" ; db_xref "SPD:07/07B12" ; GO "GO:0004842; ubiquitin conjugating enzyme activity
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR133W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "ubc14" ; product "ubiquitin conjugating enzyme Ubc14 (predicted)" ;
chromosome1 GeneDB CDS 5098187 5098405 . - . mRNA SPAC1250.03 ; colour "7" ;
chromosome1 GeneDB CDS 5098507 5098713 . - . mRNA SPAC1250.03 ; colour "7" ;
chromosome1 GeneDB CDS 5098775 5098816 . - . mRNA SPAC1250.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 5098406 5098418 . - . misc_feature unknown_4252 ; colour "6" ; note "ctaacctgtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5098501 5098506 . - . misc_feature unknown_4253 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5098714 5098735 . - . misc_feature unknown_4254 ; colour "6" ; note "ctaatattcaaatggtaaccag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5098769 5098774 . - . misc_feature unknown_4255 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 5099365 5099986 . - . mRNA SPAC1250.02 ; systematic_id "SPAC1250.02" ; colour "8" ; gene "SPAC1250.02 ||| mug95" ; db_xref "SPD:42/42E03" ; Alias "mug95" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug95" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 5099365 5099512 . - . mRNA SPAC1250.02 ; colour "8" ;
chromosome1 GeneDB CDS 5099598 5099986 . - . mRNA SPAC1250.02 ; colour "8" ;
chromosome1 GeneDB misc_feature 5099513 5099525 . - . misc_feature unknown_4256 ; colour "6" ; note "ctaatcatggtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5099592 5099597 . - . misc_feature unknown_4257 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 5100217 5100375 . - . mRNA SPAC1250.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1250.01" ; systematic_id "SPAC1250.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5100376 5104016 . - . mRNA SPAC1250.01 ; systematic_id "SPAC1250.01" ; colour "2" ; gene "snf21 ||| SPAC1250.01" ; Alias "snf21" ; db_xref "SPD:39/39B09" ; synonym "SPAC29A4.21 ||| brg1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=bromodomain; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YOR290C and YIL126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100218 ||| term=human SMARCA4 ortholog; date=20100218" ; GO "GO:0016586; RSC complex
GO:0000790; nuclear chromatin
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0003677; DNA binding
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0006366; transcription from RNA polymerase II promoter" ; primary_name "snf21" ; product "ATP-dependent DNA helicase Snf21" ;
chromosome1 GeneDB CDS 5100376 5103924 . - . mRNA SPAC1250.01 ; colour "2" ;
chromosome1 GeneDB CDS 5103966 5104016 . - . mRNA SPAC1250.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 5102958 5104407 . - . misc_feature unknown_4258 ; note "nominal overlap with cosmid SPAC29A4 and cosmid SPAC1250" ;
chromosome1 GeneDB misc_feature 5103925 5103940 . - . misc_feature unknown_4259 ; colour "6" ; note "ttaactgtttttttag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB misc_feature 5103960 5103965 . - . misc_feature unknown_4260 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5104015 5104180 . - . mRNA SPAC1250.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1250.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5104452 5104523 . - . mRNA SPAC29A4.20 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29A4.20" ; systematic_id "SPAC29A4.20" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5104524 5106253 . - . mRNA SPAC29A4.20 ; systematic_id "SPAC29A4.20" ; colour "7" ; gene "elp3 ||| SPAC29A4.20" ; Alias "elp3" ; db_xref "SPD:35/35G01" ; synonym "kat9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004402; histone acetyltransferase activity
GO:0006400; tRNA modification
GO:0033588; Elongator holoenzyme complex" ; primary_name "elp3" ; product "elongator complex, histone acetyltransferase subunit Elp3 (predicted)" ;
chromosome1 GeneDB CDS 5104524 5104605 . - . mRNA SPAC29A4.20 ; colour "7" ;
chromosome1 GeneDB CDS 5104701 5106253 . - . mRNA SPAC29A4.20 ; colour "7" ;
chromosome1 GeneDB misc_feature 5104606 5104620 . - . misc_feature unknown_4261 ; colour "6" ; note "ctaacattactttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 5104695 5104700 . - . misc_feature unknown_4262 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5106252 5106326 . - . mRNA SPAC29A4.20 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.20" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5106598 5106860 . + . mRNA SPAC29A4.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5106861 5110293 . + . mRNA SPAC29A4.19c ; systematic_id "SPAC29A4.19c" ; colour "2" ; gene "cta5 ||| SPAC29A4.19c" ; Alias "cta5" ; db_xref "SPD:48/48C07" ; GO "GO:0005388; calcium-transporting ATPase activity
GO:0006874; cellular calcium ion homeostasis
GO:0070588; transmembrane calcium ion tranport
GO:0005794; Golgi apparatus
GO:0015693; magnesium ion tranport
GO:0010961; cellular magnesium ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR291W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=phenotype, sensitive to calcium; cv=phenotype; with=GeneDB_Spombe:SPAPB2B4.04c; db_xref=PMID:19168988; date=20090424 ||| term=phenotype, sensitive to amiodarone; cv=phenotype; with=GeneDB_Spombe:SPAPB2B4.04c; db_xref=PMID:19168988; date=20090424 ||| term=phenotype, sensitive to magnesium; cv=phenotype; with=GeneDB_Spombe:SPBC31E1.02c; db_xref=PMID:19168988; date=20090424" ; primary_name "cta5" ; product "Ca2+/Mn2+ transporting P-type ATPase P5 type Cta5" ;
chromosome1 GeneDB CDS 5106861 5107454 . + . mRNA SPAC29A4.19c ; colour "2" ;
chromosome1 GeneDB CDS 5107504 5108309 . + . mRNA SPAC29A4.19c ; colour "2" ;
chromosome1 GeneDB CDS 5108357 5110068 . + . mRNA SPAC29A4.19c ; colour "2" ;
chromosome1 GeneDB CDS 5110115 5110293 . + . mRNA SPAC29A4.19c ; colour "2" ;
chromosome1 GeneDB misc_feature 5107455 5107460 . + . misc_feature unknown_4263 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5107489 5107503 . + . misc_feature unknown_4264 ; colour "6" ; note "cttacaatttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 5108310 5108315 . + . misc_feature unknown_4265 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5108342 5108356 . + . misc_feature unknown_4266 ; colour "6" ; note "ctaactttgtattag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 5110069 5110074 . + . misc_feature unknown_4267 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5110096 5110114 . + . misc_feature unknown_4268 ; colour "6" ; note "ttaacatcttatgatatag, splice branch and acceptor sequ ence" ;
chromosome1 GeneDB 3'-UTR 5110294 5110338 . + . mRNA SPAC29A4.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29A4.19c" ; systematic_id "SPAC29A4.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5110337 5110431 . - . mRNA SPAC29A4.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29A4.18" ; systematic_id "SPAC29A4.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5110432 5111874 . - . mRNA SPAC29A4.18 ; systematic_id "SPAC29A4.18" ; colour "2" ; gene "prw1 ||| SPAC29A4.18" ; Alias "prw1" ; db_xref "SPD:23/23C03" ; GO "GO:0032221; Clr6 histone deacetylase complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0006338; chromatin remodeling
GO:0006342; chromatin silencing
GO:0030261; chromosome condensation
GO:0016575; histone deacetylation
GO:0033698; Clr6 histone deacetylase complex I/I'
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:12773392; date=20100727 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YEL056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; cv=misc; db_xref=PMID:19040720; date=20081230" ; primary_name "prw1" ; product "Clr6 histone deacetylase complex subunit Prw1" ;
chromosome1 GeneDB CDS 5110432 5111536 . - . mRNA SPAC29A4.18 ; colour "2" ;
chromosome1 GeneDB CDS 5111614 5111719 . - . mRNA SPAC29A4.18 ; colour "2" ;
chromosome1 GeneDB CDS 5111790 5111874 . - . mRNA SPAC29A4.18 ; colour "2" ;
chromosome1 GeneDB misc_feature 5111537 5111559 . - . misc_feature unknown_4269 ; colour "6" ; note "cttacattttttgttatag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 5111608 5111613 . - . misc_feature unknown_4270 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5111720 5111733 . - . misc_feature unknown_4271 ; colour "6" ; note "ctaatctgaaacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 5111784 5111789 . - . misc_feature unknown_4272 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5111873 5111932 . - . mRNA SPAC29A4.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5113142 5113696 . + . mRNA SPAC29A4.17c ; db_xref "SPD:05/05F11" ; systematic_id "SPAC29A4.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=human FUNDC1 and FUNDC2 ortholog; date=20100718" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0005741; mitochondrial outer membrane" ; gene "SPAC29A4.17c" ; product "mitocondrial FUN14 family protein" ;
chromosome1 GeneDB CDS 5113142 5113369 . + . mRNA SPAC29A4.17c ; colour "10" ;
chromosome1 GeneDB CDS 5113481 5113696 . + . mRNA SPAC29A4.17c ; colour "10" ;
chromosome1 GeneDB misc_feature 5113370 5113375 . + . misc_feature unknown_4273 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5113460 5113480 . + . misc_feature unknown_4274 ; colour "6" ; note "ctaacacaatacgtttattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5113916 5114503 . - . mRNA SPAC29A4.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29A4.16" ; systematic_id "SPAC29A4.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5114504 5116414 . - . mRNA SPAC29A4.16 ; systematic_id "SPAC29A4.16" ; colour "2" ; gene "hal4 ||| sat4 ||| ppk10 ||| SPAC29A4.16" ; Alias "hal4" ; db_xref "SPD:26/26F07" ; synonym "sat4 ||| ppk10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YCR008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005524; ATP binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0030003; cation homeostasis
GO:0030003; cellular cation homeostasis
GO:0019725; cellular homeostasis
GO:0006468; protein amino acid phosphorylation
GO:0042391; regulation of membrane potential
GO:0071473; cellular response to cation stress
GO:0071473; cellular response to cation stress
GO:0042493; response to drug
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "hal4" ; product "halotolerence protein 4" ;
chromosome1 GeneDB CDS 5114504 5116414 . - . mRNA SPAC29A4.16 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5116413 5116606 . - . mRNA SPAC29A4.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5117470 5117525 . - . mRNA SPAC29A4.15 ; ID "SPAC29A4.15" ; db_xref "SPD:44/44C09" ; systematic_id "SPAC29A4.15" ; gene "SPAC29A4.15" ; note "mRNA from AU010556" ;
chromosome1 GeneDB CDS_parts 5117526 5118878 . - . mRNA SPAC29A4.15 ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:44/44C09" ; systematic_id "SPAC29A4.15" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR023W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004828; serine-tRNA ligase activity
GO:0006434; seryl-tRNA aminoacylation" ; gene "SPAC29A4.15" ; product "cytoplasmic serine-tRNA ligase Srs1 (predicted)" ; EC_number "6.1.1.11" ;
chromosome1 GeneDB CDS 5117526 5118878 . - . mRNA SPAC29A4.15 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5118877 5119031 . - . mRNA SPAC29A4.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5119527 5119672 . + . mRNA SPAC29A4.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5119673 5120876 . + . mRNA SPAC29A4.14c ; db_xref "SPD:11/11C12" ; systematic_id "SPAC29A4.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR329C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; GO "GO:0005778; peroxisomal membrane
GO:0006625; protein targeting to peroxisome
GO:0045046; protein import into peroxisome membrane" ; colour "7" ; gene "SPAC29A4.14c" ; product "peroxin-3 peroxisome import protein (predicted)" ;
chromosome1 GeneDB CDS 5119673 5119830 . + . mRNA SPAC29A4.14c ; colour "7" ;
chromosome1 GeneDB CDS 5119887 5120333 . + . mRNA SPAC29A4.14c ; colour "7" ;
chromosome1 GeneDB CDS 5120441 5120876 . + . mRNA SPAC29A4.14c ; colour "7" ;
chromosome1 GeneDB misc_feature 5120334 5120339 . + . misc_feature unknown_4275 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5120424 5120440 . + . misc_feature unknown_4276 ; colour "6" ; note "ctaacacttcgaactag, splice branch and acceptor sequen ce" ;
chromosome1 GeneDB CDS_parts 5120873 5121580 . - . mRNA SPAC29A4.13 ; db_xref "SPD:08/08D05" ; systematic_id "SPAC29A4.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0019627; urea metabolic process" ; gene "SPAC29A4.13" ; product "urease accessory protein UreF (predicted)" ;
chromosome1 GeneDB CDS 5120873 5121580 . - . mRNA SPAC29A4.13 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5120877 5121673 . + . mRNA SPAC29A4.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29A4.14c" ; systematic_id "SPAC29A4.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5121579 5122055 . - . mRNA SPAC29A4.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 5121581 5124779 . - . misc_feature unknown_4277 ; note "region showing AT composition deviation" ;
chromosome1 GeneDB 3'-UTR 5122934 5125928 . - . mRNA SPAC29A4.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29A4.11" ; systematic_id "SPAC29A4.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5124780 5125232 . + . mRNA SPAC29A4.12c ; systematic_id "SPAC29A4.12c" ; colour "8" ; gene "SPAC29A4.12c ||| mug108" ; db_xref "SPD:42/42B05" ; Alias "mug108" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug108" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 5124780 5125232 . + . mRNA SPAC29A4.12c ; colour "8" ;
chromosome1 GeneDB CDS_parts 5125929 5128838 . - . mRNA SPAC29A4.11 ; systematic_id "SPAC29A4.11" ; colour "2" ; gene "rga3 ||| SPAC29A4.11" ; Alias "rga3" ; db_xref "SPD:47/47D10" ; GO "GO:0000935; barrier septum
GO:0051285; cell cortex of cell tip
GO:0005100; Rho GTPase activator activity
GO:0032319; regulation of Rho GTPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:11737264; date=20100917 ||| term=LIM domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR127W and YDR379W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CHN1 and CHN2 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "rga3" ; product "Rho-type GTPase activating protein Rga3" ;
chromosome1 GeneDB CDS 5125929 5128838 . - . mRNA SPAC29A4.11 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5128837 5128986 . - . mRNA SPAC29A4.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5129371 5130054 . - . mRNA SPAC29A4.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29A4.10" ; systematic_id "SPAC29A4.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5130055 5131725 . - . mRNA SPAC29A4.10 ; systematic_id "SPAC29A4.10" ; colour "2" ; gene "rrn5 ||| SPAC29A4.10" ; Alias "rrn5" ; db_xref "SPD:35/35A02" ; GO "GO:0003701; RNA polymerase I transcription factor activity
GO:0000182; rDNA binding
GO:0006360; transcription from RNA polymerase I promoter
GO:0005730; nucleolus
GO:0000500; RNA polymerase I upstream activating factor complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YLR141W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "rrn5" ; product "RNA polymerase I upstream activation factor complex subunit Rrn5" ;
chromosome1 GeneDB CDS 5130055 5131725 . - . mRNA SPAC29A4.10 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5131724 5131792 . - . mRNA SPAC29A4.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5132013 5132239 . - . mRNA SPAC29A4.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29A4.09" ; systematic_id "SPAC29A4.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5132240 5132938 . - . mRNA SPAC29A4.09 ; db_xref "SPD:08/08C01" ; systematic_id "SPAC29A4.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR412W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006364; rRNA processing
GO:0004527; exonuclease activity
GO:0000967; rRNA 5'-end processing" ; gene "SPAC29A4.09" ; product "rRNA exonuclease Rrp17 (predicted)" ;
chromosome1 GeneDB CDS 5132240 5132641 . - . mRNA SPAC29A4.09 ; colour "7" ;
chromosome1 GeneDB CDS 5132689 5132794 . - . mRNA SPAC29A4.09 ; colour "7" ;
chromosome1 GeneDB CDS 5132835 5132938 . - . mRNA SPAC29A4.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 5132642 5132655 . - . misc_feature unknown_4278 ; colour "6" ; note "ctaacactattcag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 5132683 5132688 . - . misc_feature unknown_4279 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5132795 5132808 . - . misc_feature unknown_4280 ; colour "6" ; note "ctaacttgttacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 5132829 5132834 . - . misc_feature unknown_4281 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5132937 5133056 . - . mRNA SPAC29A4.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5133217 5133241 . + . mRNA SPAC29A4.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5133242 5135233 . + . mRNA SPAC29A4.08c ; systematic_id "SPAC29A4.08c" ; colour "2" ; gene "prp19 ||| cwf8 ||| SPAC29A4.08c" ; Alias "prp19" ; db_xref "SPD:27/27D01" ; synonym "cwf8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=U-box domain; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; date=19700101 ||| term=orthologous to S. cerevisiae YLL036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005681; spliceosome complex
GO:0000151; ubiquitin ligase complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0016567; protein ubiquitination
GO:0006511; ubiquitin-dependent protein catabolism" ; primary_name "prp19" ; product "ubiquitin-protein ligase E4" ;
chromosome1 GeneDB CDS 5133242 5133299 . + . mRNA SPAC29A4.08c ; colour "2" ;
chromosome1 GeneDB CDS 5133340 5133444 . + . mRNA SPAC29A4.08c ; colour "2" ;
chromosome1 GeneDB CDS 5133930 5135233 . + . mRNA SPAC29A4.08c ; colour "2" ;
chromosome1 GeneDB misc_feature 5133300 5133305 . + . misc_feature unknown_4282 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5133326 5133339 . + . misc_feature unknown_4283 ; colour "6" ; note "ctcagtgaatgtag, splice branch and acceptor sequence" ;
chromosome1 GeneDB misc_feature 5133445 5133450 . + . misc_feature unknown_4284 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5133915 5133929 . + . misc_feature unknown_4285 ; colour "6" ; note "ctaacctttaaacag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 5135234 5135342 . + . mRNA SPAC29A4.08c ; Alias "prp19" ; ID "SPAC29A4.08c" ; db_xref "SPD:27/27D01" ; systematic_id "SPAC29A4.08c" ; primary_name "prp19" ; gene "prp19 ||| cwf8 ||| SPAC29A4.08c" ; note "mRNA from AU007706" ;
chromosome1 GeneDB CDS_parts 5135423 5135833 . - . mRNA SPAC29A4.07 ; systematic_id "SPAC29A4.07" ; colour "2" ; gene "srb6 ||| med22 ||| SPAC29A4.07" ; Alias "srb6" ; db_xref "SPD:03/03C01" ; synonym "med22" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR253W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=human MED22 ortholog; date=20110113 ||| term=species distribution, conserved in Vertebrates; date=20110113 ||| term=species distribution, conserved in Metazoa; date=20110113" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex" ; primary_name "srb6" ; product "mediator complex subunit Srb6" ;
chromosome1 GeneDB CDS 5135423 5135833 . - . mRNA SPAC29A4.07 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5135832 5135863 . - . mRNA SPAC29A4.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5136083 5136166 . + . mRNA SPAC29A4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5136167 5137276 . + . mRNA SPAC29A4.06c ; db_xref "SPD:17/17E01" ; systematic_id "SPAC29A4.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CCDC50 ortholog; date=20100704" ; colour "10" ; gene "SPAC29A4.06c" ; product "human CCDC55 ortholog" ;
chromosome1 GeneDB CDS 5136167 5136362 . + . mRNA SPAC29A4.06c ; colour "10" ;
chromosome1 GeneDB CDS 5136405 5137276 . + . mRNA SPAC29A4.06c ; colour "10" ;
chromosome1 GeneDB misc_feature 5136363 5136368 . + . misc_feature unknown_4286 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5136392 5136404 . + . misc_feature unknown_4287 ; colour "6" ; note "ctaactgacttag, splice branch and acceptor sequence" ;
chromosome1 GeneDB 3'-UTR 5137349 5137554 . - . mRNA SPAC29A4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29A4.05" ; systematic_id "SPAC29A4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5137555 5137986 . - . mRNA SPAC29A4.05 ; systematic_id "SPAC29A4.05" ; colour "2" ; gene "cam2 ||| SPAC29A4.05" ; Alias "cam2" ; db_xref "SPD:03/03E11" ; GO "GO:0005509; calcium ion binding
GO:0045160; myosin I complex
GO:0030048; actin filament-based movement
GO:0005515; protein binding
GO:0030437; sporulation (sensu Fungi)
GO:0051286; cell tip
GO:0031097; medial ring
GO:0005628; forespore membrane
GO:0043332; mating projection tip
GO:0032120; prospore membrane formation
GO:0005737; cytoplasm
GO:0005938; cell cortex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:17202724; date=20070115 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17202724; date=20070115 ||| term=calmodulin family; qualifier=predicted; date=19700101 ||| term=EF hand; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cam2" ; product "myosin I light chain Cam2" ; reserved_name "cam2" ;
chromosome1 GeneDB CDS 5137555 5137986 . - . mRNA SPAC29A4.05 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5137985 5138112 . - . mRNA SPAC29A4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5140369 5140406 . + . mRNA SPAC29A4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29A4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5140407 5141831 . + . mRNA SPAC29A4.04c ; db_xref "SPD:21/21H07" ; systematic_id "SPAC29A4.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PUA domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0004730; pseudouridylate synthase activity
GO:0006364; 35S primary transcript processing
GO:0000154; rRNA modification" ; gene "SPAC29A4.04c" ; product "pseudouridylate synthase (predicted)" ;
chromosome1 GeneDB CDS 5140407 5141831 . + . mRNA SPAC29A4.04c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5141832 5142190 . + . mRNA SPAC29A4.04c ; ID "SPAC29A4.04c" ; db_xref "SPD:21/21H07" ; systematic_id "SPAC29A4.04c" ; gene "SPAC29A4.04c" ; note "mRNA from AU013353" ;
chromosome1 GeneDB CDS_parts 5142407 5143224 . + . mRNA SPAC29A4.03c ; db_xref "SPD:03/03A08" ; systematic_id "SPAC29A4.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR146W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131 ||| term=warning, frameshifted; date=20110131 ||| term=warning, sequence error in genomic data; date=20110131 ||| term=error confirmed http://www.sanger.ac.uk/Projects/S_pombe/ sequence_discrepancies.shtml; date=20110131" ; colour "7" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; gene "SPAC29A4.03c" ; product "mitochondrial ribosomal protein subunit Mrps9 (predicted)" ;
chromosome1 GeneDB CDS 5142407 5142628 . + . mRNA SPAC29A4.03c ; colour "7" ;
chromosome1 GeneDB CDS 5142631 5143224 . + . mRNA SPAC29A4.03c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5143225 5143558 . + . mRNA SPAC29A4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29A4.03c" ; systematic_id "SPAC29A4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5143818 5145340 . + . mRNA SPAC29A4.02c ; systematic_id "SPAC29A4.02c" ; colour "2" ; gene "SPAC29A4.02c" ; obsolete_name "tef3" ; db_xref "SPD:24/24F12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR201C and YKL081W and YPL048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111 ||| term=warning, ncRNA in intron; cv=warning; date=20100217" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; product "translation elongation factor EF-1 gamma subunit" ;
chromosome1 GeneDB CDS 5143818 5144034 . + . mRNA SPAC29A4.02c ; colour "2" ;
chromosome1 GeneDB CDS 5144328 5145340 . + . mRNA SPAC29A4.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 5144035 5144040 . + . misc_feature unknown_4288 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 5144035 5144327 . + . intron SPAC29A4.02c ; db_xref "SPD:24/24F12" ; systematic_id "SPAC29A4.02c" ; gene "SPAC29A4.02c" ; note "confirmed intron" ;
chromosome1 GeneDB snoRNA 5144133 5144206 . + . snoRNA SPSNORNA.15 ; Alias "snoR38" ; synonym "snR38" ; systematic_id "SPSNORNA.15" ; controlled_curation "term=orthologous to S. cerevisiae snR38; date=20070125 ||| term=warning, ncRNA in intron; date=20100426" ; primary_name "snoR38" ; gene "snoR38 ||| SPSNORNA.15" ; product "small nucleolar RNA snR38 (predicted)" ;
chromosome1 GeneDB misc_feature 5144311 5144327 . + . misc_feature unknown_4289 ; colour "6" ; note "ctaattgtaattttag, splice branch and acceptor sequenc e" ;
chromosome1 GeneDB 3'-UTR 5145341 5145515 . + . mRNA SPAC29A4.02c ; ID "SPAC29A4.02c" ; db_xref "SPD:24/24F12" ; systematic_id "SPAC29A4.02c" ; gene "SPAC29A4.02c" ; note "mRNA from AU012329" ;
chromosome1 GeneDB 5'-UTR 5146199 5146272 . + . mRNA SPAC26F1.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26F1.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5146273 5148000 . + . mRNA SPAC26F1.14c ; systematic_id "SPAC26F1.14c" ; colour "7" ; gene "SPAC29A4.01c ||| SPAC26F1.14c ||| aif1" ; Alias "aif1" ; db_xref "SPD:35/35F12" ; synonym "SPAC29A4.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005634; nucleus
GO:0005739; mitochondrion
GO:0016668; oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor
GO:0071452; cellular response to singlet oxygen" ; primary_name "aif1" ; product "apoptosis-inducing factor homolog Aif1 (predicted)" ;
chromosome1 GeneDB CDS 5146273 5148000 . + . mRNA SPAC26F1.14c ; colour "7" ;
chromosome1 GeneDB misc_feature 5146936 5147039 . + . misc_feature unknown_4290 ; note "nominal overlap with cosmid SPAC26F1 and cosmid SPAC29A4" ;
chromosome1 GeneDB 3'-UTR 5148001 5148454 . + . mRNA SPAC26F1.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26F1.14c" ; systematic_id "SPAC26F1.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snoRNA 5148474 5148555 . - . snoRNA SPSNORNA.16 ; Alias "snoR56" ; systematic_id "SPSNORNA.16" ; controlled_curation "term=orthologous to S. cerevisiae snR56; date=20070104" ; primary_name "snoR56" ; gene "sn0R56 ||| SPSNORNA.16" ; product "small nucleolar RNA snR56 (predicted)" ;
chromosome1 GeneDB 5'-UTR 5148843 5148943 . + . mRNA SPAC26F1.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26F1.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5148944 5152279 . + . mRNA SPAC26F1.13c ; systematic_id "SPAC26F1.13c" ; colour "7" ; gene "SPAC26F1.13c ||| lrs1" ; Alias "lrs1" ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:30/30D04" ; GO "GO:0005737; cytoplasm
GO:0004823; leucine-tRNA ligase activity
GO:0006429; leucyl-tRNA aminoacylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL160W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "lrs1" ; product "cytoplasmic leucine-tRNA ligase Lrs1 (predicted)" ; EC_number "6.1.1.4" ;
chromosome1 GeneDB CDS 5148944 5152279 . + . mRNA SPAC26F1.13c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5152280 5152414 . + . mRNA SPAC26F1.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26F1.13c" ; systematic_id "SPAC26F1.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB repeat_region 5152492 5153331 . + . repeat_region unknown_4291 ; note "duplicated region in c569 & 1884" ;
chromosome1 GeneDB 5'-UTR 5153841 5153931 . + . mRNA SPAC26F1.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26F1.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5153932 5155093 . + . mRNA SPAC26F1.12c ; db_xref "SPD:18/18D03" ; systematic_id "SPAC26F1.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR187C; date=19700101 ||| term=human BRP16 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human c8orf30A ortholog; date=20100718" ; colour "10" ; GO "GO:0005737; cytoplasm" ; gene "SPAC26F1.12c" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB CDS 5153932 5153949 . + . mRNA SPAC26F1.12c ; colour "10" ;
chromosome1 GeneDB CDS 5153990 5154942 . + . mRNA SPAC26F1.12c ; colour "10" ;
chromosome1 GeneDB CDS 5154994 5155093 . + . mRNA SPAC26F1.12c ; colour "10" ;
chromosome1 GeneDB misc_feature 5153950 5153955 . + . misc_feature unknown_4292 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5153977 5153989 . + . misc_feature unknown_4293 ; colour "6" ; note "ttaacataattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5154943 5154948 . + . misc_feature unknown_4294 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5154980 5154993 . + . misc_feature unknown_4295 ; colour "6" ; note "ctaattcaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5155094 5155228 . + . mRNA SPAC26F1.12c ; ID "SPAC26F1.12c" ; db_xref "SPD:18/18D03" ; systematic_id "SPAC26F1.12c" ; gene "SPAC26F1.12c" ; note "mRNA from AU013145" ;
chromosome1 GeneDB misc_feature 5155229 5161473 . - . misc_feature unknown_4296 ; note "gene free region, low complexity" ;
chromosome1 GeneDB misc_feature 5156411 5157172 . + . misc_feature unknown_4297 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG979 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 5158023 5158340 . - . mRNA SPAC26F1.11 ; db_xref "SPD:42/42A05" ; systematic_id "SPAC26F1.11" ; colour "6" ; gene "SPAC26F1.11" ; product "dubious" ; note "ORF in predicted gene free region with (G-C)/(G+C) strand switch ||| 28-11-07, returned to dubious, has no transcript from Affeymetrix or Solexa, very unlikely to be coding" ;
chromosome1 GeneDB CDS 5158023 5158340 . - . mRNA SPAC26F1.11 ; colour "6" ;
chromosome1 GeneDB 5'-UTR 5161474 5161511 . + . mRNA SPAC26F1.10c ; Alias "pyp1" ; ID "SPAC26F1.10c" ; systematic_id "SPAC26F1.10c" ; primary_name "pyp1" ; gene "pyp1 ||| SPAC26F1.10c" ; note "mRNA from SPPYP" ;
chromosome1 GeneDB CDS_parts 5161512 5163164 . + . mRNA SPAC26F1.10c ; systematic_id "SPAC26F1.10c" ; colour "2" ; gene "pyp1 ||| SPAC26F1.10c" ; Alias "pyp1" ; db_xref "SPD:34/34F11" ; GO "GO:0045930; negative regulation of progression through mitotic cell cycle
GO:0006470; protein amino acid dephosphorylation
GO:0045014; negative regulation of transcription by glucose
GO:0004725; protein tyrosine phosphatase activity
GO:0032873; negative regulation of stress- activated MAPK cascade" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR208W and YER075C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Sty1; db_xref=PMID:8649397; date=20100823 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:1448087; date=20101126" ; primary_name "pyp1" ; product "tyrosine phosphatase Pyp1" ; EC_number "3.1.3.48" ;
chromosome1 GeneDB CDS 5161512 5163164 . + . mRNA SPAC26F1.10c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5163165 5163360 . + . mRNA SPAC26F1.10c ; Alias "pyp1" ; ID "SPAC26F1.10c" ; db_xref "SPD:34/34F11" ; systematic_id "SPAC26F1.10c" ; primary_name "pyp1" ; gene "pyp1 ||| SPAC26F1.10c" ; note "mRNA from SPPYP" ;
chromosome1 GeneDB 3'-UTR 5163555 5163740 . - . mRNA SPAC26F1.09 ; ID "SPAC26F1.09" ; db_xref "SPD:30/30A05" ; systematic_id "SPAC26F1.09" ; gene "SPAC26F1.09 ||| gyp51" ; note "mRNA from AU007631" ;
chromosome1 GeneDB CDS_parts 5163741 5166836 . - . mRNA SPAC26F1.09 ; systematic_id "SPAC26F1.09" ; colour "7" ; gene "SPAC26F1.09 ||| gyp51" ; Alias "gyp51" ; db_xref "SPD:30/30A05" ; GO "GO:0005097; Rab GTPase activator activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005798; Golgi-associated vesicle
GO:0005886; plasma membrane
GO:0005829; cytosol
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL249C and YMR192W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gyp51" ; product "GTPase activating protein Gyp51 (predicted)" ; reserved_name "gyp51" ;
chromosome1 GeneDB CDS 5163741 5166836 . - . mRNA SPAC26F1.09 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5166835 5166987 . - . mRNA SPAC26F1.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26F1.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5167041 5167498 . + . mRNA SPAC26F1.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26F1.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5167499 5170475 . + . mRNA SPAC26F1.08c ; db_xref "SPD:29/29G09" ; systematic_id "SPAC26F1.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=orthologous to S. cerevisiae YDL231C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20090105 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0016021; integral to membrane" ; gene "SPAC26F1.08c" ; product "conserved protein" ;
chromosome1 GeneDB CDS 5167499 5167871 . + . mRNA SPAC26F1.08c ; colour "10" ;
chromosome1 GeneDB CDS 5167915 5170475 . + . mRNA SPAC26F1.08c ; colour "10" ;
chromosome1 GeneDB misc_feature 5167872 5167877 . + . misc_feature unknown_4298 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5167899 5167914 . + . misc_feature unknown_4299 ; colour "6" ; note "ctaacatttatcttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5170842 5170882 . - . mRNA SPAC26F1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26F1.07" ; systematic_id "SPAC26F1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5170883 5171848 . - . mRNA SPAC26F1.07 ; db_xref "SPD:13/13G02" ; systematic_id "SPAC26F1.07" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR368W and YOR120W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0042843; D-xylose catabolism
GO:0019568; arabinose catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0047935; glucose 1-dehydrogenase (NADP+) activity" ; gene "SPAC26F1.07" ; product "glucose 1-dehydrogenase (NADP+) (predicted)" ; EC_number "1.1.1.21" ;
chromosome1 GeneDB CDS 5170883 5171848 . - . mRNA SPAC26F1.07 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5171847 5172047 . - . mRNA SPAC26F1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26F1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5172196 5172341 . + . misc_RNA SPNCRNA.90 ; systematic_id "SPNCRNA.90" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.90" ; product "non-coding RNA (predicted)" ; note "highly similar to region downstream of S.pombe rps13 gene for ribosomal protein S13- no open reading frame , putative misc_RNA" ;
chromosome1 GeneDB 3'-UTR 5173864 5173971 . - . mRNA SPAC26F1.06 ; Alias "gpm1" ; ID "SPAC26F1.06" ; db_xref "SPD:07/07C08" ; systematic_id "SPAC26F1.06" ; primary_name "gpm1" ; gene "gpm1 ||| SPAC26F1.06" ; note "mRNA from AU010092" ;
chromosome1 GeneDB CDS_parts 5173972 5174607 . - . mRNA SPAC26F1.06 ; systematic_id "SPAC26F1.06" ; colour "2" ; gene "gpm1 ||| SPAC26F1.06" ; Alias "gpm1" ; db_xref "SPD:07/07C08" ; GO "GO:0006096; glycolysis
GO:0005829; cytosol
GO:0004619; phosphoglycerate mutase activity
GO:0006094; gluconeogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL152C and YDL021W and YOL056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "gpm1" ; product "monomeric 2,3-bisphosphoglycerate (BPG)- dependent phosphoglycerate mutase (PGAM), Gpm1" ; EC_number "5.4.2.1" ;
chromosome1 GeneDB CDS 5173972 5174607 . - . mRNA SPAC26F1.06 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5174608 5174644 . - . mRNA SPAC26F1.06 ; Alias "gpm1" ; ID "SPAC26F1.06" ; systematic_id "SPAC26F1.06" ; primary_name "gpm1" ; gene "gpm1 ||| SPAC26F1.06" ; note "mRNA from AU008110" ;
chromosome1 GeneDB CDS_parts 5174979 5175326 . - . mRNA SPAC26F1.05 ; systematic_id "SPAC26F1.05" ; colour "8" ; gene "SPAC26F1.05 ||| mug106" ; db_xref "SPD:02/02B07" ; Alias "mug106" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug106" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 5174979 5175326 . - . mRNA SPAC26F1.05 ; colour "8" ;
chromosome1 GeneDB LTR 5175815 5176226 . + . LTR unknown_4300 ; colour "4" ; note "tf2 ltr" ;
chromosome1 GeneDB misc_RNA 5177861 5178194 . + . misc_RNA SPNCRNA.260 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.260" ; synonym "SPNG987" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5178318 5178324 . + . mRNA SPAC26F1.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26F1.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5178325 5179443 . + . mRNA SPAC26F1.04c ; systematic_id "SPAC26F1.04c" ; colour "7" ; gene "SPAC26F1.04c ||| etr1" ; Alias "etr1" ; db_xref "SPD:17/17F03" ; GO "GO:0016631; enoyl-[acyl-carrier-protein] reductase activity
GO:0006633; fatty acid biosynthesis
GO:0009060; aerobic respiration
GO:0004024; alcohol dehydrogenase activity, zinc- dependent
GO:0008270; zinc ion binding
GO:0005739; mitochondrion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "etr1" ; product "enoyl-[acyl-carrier protein] reductase (predicted)" ; EC_number "1.3.1.-" ;
chromosome1 GeneDB CDS 5178325 5179443 . + . mRNA SPAC26F1.04c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5179652 5179830 . - . mRNA SPAC26F1.03 ; Alias "pda1" ; ID "SPAC26F1.03" ; db_xref "SPD:22/22C01" ; systematic_id "SPAC26F1.03" ; primary_name "pda1" ; gene "pda1 ||| SPAC26F1.03" ; note "mRNA from AU013273" ;
chromosome1 GeneDB CDS_parts 5179831 5181060 . - . mRNA SPAC26F1.03 ; systematic_id "SPAC26F1.03" ; colour "7" ; gene "pda1 ||| SPAC26F1.03" ; Alias "pda1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00290; ||| KEGG:MAP00620; ||| KEGG:MAP00650; ||| SPD:22/22C01" ; GO "GO:0006086; acetyl-CoA biosynthesis from pyruvate
GO:0004739; pyruvate dehydrogenase (acetyl- transferring) activity
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, lactic acidosis; date=20060725 ||| term=orthologous to S. cerevisiae YER178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "pda1" ; product "pyruvate dehydrogenase e1 component alpha subunit Pda1 (predicted)" ; EC_number "1.2.4.1" ;
chromosome1 GeneDB CDS 5179831 5181060 . - . mRNA SPAC26F1.03 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5181059 5181232 . - . mRNA SPAC26F1.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26F1.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5181563 5181981 . - . mRNA SPAC26F1.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26F1.02" ; systematic_id "SPAC26F1.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5181982 5182731 . - . mRNA SPAC26F1.02 ; systematic_id "SPAC26F1.02" ; colour "7" ; gene "SPAC26F1.02 ||| pnn1" ; Alias "pnn1" ; db_xref "SPD:09/09B08" ; GO "GO:0005634; nucleus
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosomal complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human PNN ortholog; date=20100704" ; primary_name "pnn1" ; product "pinin ortholog, involved in splicing Pnn1 (predicted)" ; reserved_name "pnn1" ;
chromosome1 GeneDB CDS 5181982 5182122 . - . mRNA SPAC26F1.02 ; colour "7" ;
chromosome1 GeneDB CDS 5182191 5182632 . - . mRNA SPAC26F1.02 ; colour "7" ;
chromosome1 GeneDB CDS 5182721 5182731 . - . mRNA SPAC26F1.02 ; colour "7" ;
chromosome1 GeneDB misc_feature 5182123 5182143 . - . misc_feature unknown_4301 ; colour "6" ; note "ctaactttccaatttatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5182185 5182190 . - . misc_feature unknown_4302 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5182633 5182659 . - . misc_feature unknown_4303 ; colour "6" ; note "ctaatgaccgacgcaaactgtaactag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5182715 5182720 . - . misc_feature unknown_4304 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 3'-UTR 5182826 5182921 . - . mRNA SPAC26F1.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC26F1.01" ; systematic_id "SPAC26F1.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5182922 5185708 . - . mRNA SPAC26F1.01 ; systematic_id "SPAC26F1.01" ; colour "7" ; gene "sec74 ||| SPAC26F1.01 ||| SPAPJ691.01c" ; Alias "sec74" ; db_xref "SPD:29/29D09" ; synonym "SPAPJ691.01c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YPR095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005086; ARF guanyl-nucleotide exchange factor activity
GO:0006886; intracellular protein transport
GO:0006887; exocytosis
GO:0016192; vesicle-mediated transport" ; primary_name "sec74" ; product "guanyl-nucleotide exchange factor Sec74 (predicted)" ;
chromosome1 GeneDB CDS 5182922 5185708 . - . mRNA SPAC26F1.01 ; colour "7" ;
chromosome1 GeneDB misc_feature 5184787 5184895 . + . misc_feature unknown_4305 ; note "nominal overlap with cosmid c26F1" ;
chromosome1 GeneDB 5'-UTR 5185707 5186127 . - . mRNA SPAC26F1.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC26F1.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5188171 5188566 . + . mRNA SPAPJ691.02 ; systematic_id "SPAPJ691.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, DiGeorge syndrome; date=20060725 ||| term=orthologous to S. cerevisiae YBL049W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0008270; zinc ion binding" ; gene "SPAPJ691.02" ; product "yippee-like protein" ;
chromosome1 GeneDB CDS 5188171 5188566 . + . mRNA SPAPJ691.02 ; colour "10" ;
chromosome1 GeneDB 5'-UTR 5189599 5189726 . + . mRNA SPAPJ691.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPJ691.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5189727 5190258 . + . mRNA SPAPJ691.03 ; systematic_id "SPAPJ691.03" ; GO "GO:0005759; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCL057C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human C1orf151 ortholog; date=20100704" ; colour "10" ; gene "SPAPJ691.03" ; product "mitochondrial conserved eukaryotic protein" ;
chromosome1 GeneDB CDS 5189727 5189768 . + . mRNA SPAPJ691.03 ; colour "10" ;
chromosome1 GeneDB CDS 5189969 5190053 . + . mRNA SPAPJ691.03 ; colour "10" ;
chromosome1 GeneDB CDS 5190125 5190258 . + . mRNA SPAPJ691.03 ; colour "10" ;
chromosome1 GeneDB misc_feature 5189769 5189774 . + . misc_feature unknown_4306 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5189948 5189968 . + . misc_feature unknown_4307 ; colour "6" ; note "ctaacaacattgctgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5190054 5190059 . + . misc_feature unknown_4308 ; colour "6" ; note "gtattg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5190103 5190124 . + . misc_feature unknown_4309 ; colour "6" ; note "ttaacgaaatttttttgttcag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5190259 5190362 . + . mRNA SPAPJ691.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPJ691.03" ; systematic_id "SPAPJ691.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 5190745 5191106 . - . LTR Tf2-7 ; systematic_id "Tf2-7" ; note "TF2 LTR" ;
chromosome1 GeneDB CDS_parts 5191144 5195145 . - . mRNA SPAC13D1.01c ; Alias "Tf2-7" ; systematic_id "SPAC13D1.01c" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "Tf2-7 ||| SPAC13D1.01c" ; primary_name "Tf2-7" ; product "retrotransposable element" ;
chromosome1 GeneDB CDS 5191144 5195145 . - . mRNA SPAC13D1.01c ; colour "4" ;
chromosome1 GeneDB misc_feature 5194995 5200227 . + . misc_feature unknown_4310 ; note "tandemly repeated tf2 transposon" ;
chromosome1 GeneDB LTR 5195312 5195667 . - . LTR unknown_4311 ; colour "4" ; note "1019 (-1) 12 358 Tf1-type LTR ||| Identical to tf2 LTR" ;
chromosome1 GeneDB CDS_parts 5195711 5199712 . - . mRNA SPAC19D5.09c ; Alias "Tf2-8" ; systematic_id "SPAC19D5.09c" ; synonym "SPAC13D1.02c" ; colour "4" ; controlled_curation "term=tf2-type transposon; date=19700101" ; gene "Tf2-8 ||| SPAC19D5.09c" ; primary_name "Tf2-8" ; product "retrotransposable element" ;
chromosome1 GeneDB CDS 5195711 5199712 . - . mRNA SPAC19D5.09c ; colour "4" ;
chromosome1 GeneDB LTR 5199879 5200227 . - . LTR unknown_4312 ; colour "4" ; note "identical to tf2 LTR" ;
chromosome1 GeneDB LTR 5200296 5200657 . - . LTR unknown_4313 ; note "512 (-1) 1 356 TF1" ;
chromosome1 GeneDB 5'-UTR 5202366 5202822 . + . mRNA SPAC19D5.01 ; Alias "pyp2" ; ID "SPAC19D5.01" ; systematic_id "SPAC19D5.01" ; primary_name "pyp2" ; gene "pyp2 ||| SPAC19D5.01" ; note "mRNA from SPPYP2" ;
chromosome1 GeneDB CDS_parts 5202823 5204958 . + . mRNA SPAC19D5.01 ; systematic_id "SPAC19D5.01" ; colour "2" ; gene "pyp2 ||| SPAC19D5.01" ; Alias "pyp2" ; db_xref "SPD:37/37E03" ; GO "GO:0005737; cytoplasm
GO:0004725; protein tyrosine phosphatase activity
GO:0045835; negative regulation of meiosis
GO:0006470; protein amino acid dephosphorylation
GO:0005515; protein binding
GO:0051403; stress-activated MAPK cascade
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:1448087; date=20101126 ||| term=orthologous to S. cerevisiae YOR208W and YER075C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Sty1; qualifier=dephosphorylates; db_xref=PMID:7657164; date=20100823" ; primary_name "pyp2" ; product "tyrosine phosphatase Pyp2" ; EC_number "3.1.3.48" ;
chromosome1 GeneDB CDS 5202823 5204958 . + . mRNA SPAC19D5.01 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5204959 5205202 . + . mRNA SPAC19D5.01 ; Alias "pyp2" ; ID "SPAC19D5.01" ; db_xref "SPD:37/37E03" ; systematic_id "SPAC19D5.01" ; primary_name "pyp2" ; gene "pyp2 ||| SPAC19D5.01" ; note "mRNA from spc03110" ;
chromosome1 GeneDB 3'-UTR 5205272 5205463 . - . mRNA SPAC19D5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19D5.02c" ; systematic_id "SPAC19D5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5205464 5206135 . - . mRNA SPAC19D5.02c ; db_xref "SPD:07/07G02" ; systematic_id "SPAC19D5.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL055W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0006625; protein targeting to peroxisome
GO:0005777; peroxisome" ; gene "SPAC19D5.02c" ; product "peroxisomal membrane protein Pex22 (predicted)" ;
chromosome1 GeneDB CDS 5205464 5206135 . - . mRNA SPAC19D5.02c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5206134 5206205 . - . mRNA SPAC19D5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19D5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5206595 5206712 . + . mRNA SPAC19D5.03 ; Alias "cid1" ; ID "SPAC19D5.03" ; systematic_id "SPAC19D5.03" ; primary_name "cid1" ; gene "cid1 ||| SPAC19D5.03" ; note "mRNA from AF105076" ;
chromosome1 GeneDB CDS_parts 5206713 5208135 . + . mRNA SPAC19D5.03 ; systematic_id "SPAC19D5.03" ; colour "2" ; gene "cid1 ||| SPAC19D5.03" ; Alias "cid1" ; db_xref "SPD:21/21H05" ; GO "GO:0005737; cytoplasm
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0043631; RNA polyadenylation
GO:0071076; RNA 3' uridylation
GO:0050265; RNA uridylyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cid1" ; product "poly(A) polymerase Cid1" ; EC_number "2.7.7.52" ;
chromosome1 GeneDB CDS 5206713 5206956 . + . mRNA SPAC19D5.03 ; colour "2" ;
chromosome1 GeneDB CDS 5207061 5207201 . + . mRNA SPAC19D5.03 ; colour "2" ;
chromosome1 GeneDB CDS 5207303 5208135 . + . mRNA SPAC19D5.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 5206957 5206962 . + . misc_feature unknown_4314 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB intron 5206957 5207060 . + . intron SPAC19D5.03 ; Alias "cid1" ; db_xref "SPD:21/21H05" ; systematic_id "SPAC19D5.03" ; primary_name "cid1" ; gene "cid1 ||| SPAC19D5.03" ; note "confirmed intron" ;
chromosome1 GeneDB intron 5207202 5207302 . + . intron SPAC19D5.03 ; Alias "cid1" ; db_xref "SPD:21/21H05" ; systematic_id "SPAC19D5.03" ; primary_name "cid1" ; gene "cid1 ||| SPAC19D5.03" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5207289 5207302 . + . misc_feature unknown_4315 ; colour "6" ; note "ctaatgatatgtgacttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5208136 5208422 . + . mRNA SPAC19D5.03 ; Alias "cid1" ; ID "SPAC19D5.03" ; db_xref "SPD:21/21H05" ; systematic_id "SPAC19D5.03" ; primary_name "cid1" ; gene "cid1 ||| SPAC19D5.03" ; note "mRNA from AF105076" ;
chromosome1 GeneDB 5'-UTR 5208683 5208775 . + . mRNA SPAC19D5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19D5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5208776 5218459 . + . mRNA SPAC19D5.04 ; systematic_id "SPAC19D5.04" ; colour "2" ; gene "ptr1 ||| SPAC19D5.04" ; Alias "ptr1" ; db_xref "SPD:34/34D06" ; GO "GO:0006406; mRNA export from nucleus
GO:0004842; ubiquitin-protein ligase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; db_xref=PMID:15094387; date=19700101 ||| term=orthologous to S. cerevisiae YDR457W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ptr1" ; product "HECT-type ubiquitin ligase E3 Ptr1" ;
chromosome1 GeneDB CDS 5208776 5218459 . + . mRNA SPAC19D5.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5218460 5218745 . + . mRNA SPAC19D5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19D5.04" ; systematic_id "SPAC19D5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5218745 5218898 . - . mRNA SPAC19D5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC19D5.05c" ; systematic_id "SPAC19D5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5218899 5219535 . - . mRNA SPAC19D5.05c ; db_xref "SPD:07/07C11" ; systematic_id "SPAC19D5.05c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR148W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0030532; small nuclear ribonucleoprotein complex
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding" ; gene "SPAC19D5.05c" ; product "U3 snoRNP-associated protein Imp3 (predicted)" ;
chromosome1 GeneDB CDS 5218899 5218922 . - . mRNA SPAC19D5.05c ; colour "7" ;
chromosome1 GeneDB CDS 5218962 5219470 . - . mRNA SPAC19D5.05c ; colour "7" ;
chromosome1 GeneDB CDS 5219517 5219535 . - . mRNA SPAC19D5.05c ; colour "7" ;
chromosome1 GeneDB misc_feature 5218923 5218934 . - . misc_feature unknown_4316 ; colour "6" ; note "ctaaccttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5218956 5218961 . - . misc_feature unknown_4317 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5219471 5219487 . - . misc_feature unknown_4318 ; colour "6" ; note "ctaattgcaaaatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5219511 5219516 . - . misc_feature unknown_4319 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 5219635 5220013 . - . mRNA SPAC19D5.11c ; systematic_id "SPAC19D5.11c" ; colour "7" ; db_xref "SPD:52/52C02" ; Alias "ctf8" ; GO "GO:0031390; Ctf18 RFC-like complex
GO:0003689; DNA clamp loader activity
GO:0000790; nuclear chromatin
GO:0007062; sister chromatid cohesion
GO:0031390; nuclear replication fork" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16040599; date=19700101 ||| term=orthologous to S. cerevisiae YHR191C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, new gene; attribution=pers. comm. S. MacNeill; date=20100505" ; primary_name "ctf8" ; product "DNA replication factor C complex subunit Ctf8 (predicted)" ;
chromosome1 GeneDB CDS 5219635 5219847 . - . mRNA SPAC19D5.11c ; colour "7" ;
chromosome1 GeneDB CDS 5219897 5220013 . - . mRNA SPAC19D5.11c ; colour "7" ;
chromosome1 GeneDB CDS_parts 5220220 5221278 . - . mRNA SPAC19D5.06c ; systematic_id "SPAC19D5.06c" ; colour "2" ; gene "din1 ||| SPAC19D5.06c" ; Alias "din1" ; db_xref "SPD:16/16C03" ; synonym "rai1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL246C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human DOM3Z ortholog; date=20100902" ; GO "GO:0005634; nucleus
GO:0006364; rRNA processing
GO:0030846; transcription termination from Pol II promoter, RNA polymerase(A) coupled" ; primary_name "din1" ; product "Dhp1p-interacting protein Din1" ;
chromosome1 GeneDB CDS 5220220 5221278 . - . mRNA SPAC19D5.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5221277 5221383 . - . mRNA SPAC19D5.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC19D5.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5221387 5221719 . - . mRNA SPAC19D5.10c ; db_xref "SPD:52/52C01" ; systematic_id "SPAC19D5.10c" ; colour "6" ; gene "SPAC19D5.10c" ; product "dubious" ;
chromosome1 GeneDB CDS 5221387 5221641 . - . mRNA SPAC19D5.10c ; colour "6" ;
chromosome1 GeneDB CDS 5221711 5221719 . - . mRNA SPAC19D5.10c ; colour "6" ;
chromosome1 GeneDB CDS_parts 5223184 5224608 . + . mRNA SPAC19D5.07 ; systematic_id "SPAC19D5.07" ; colour "2" ; gene "SPAC19D5.07 ||| uga1" ; Alias "uga1" ; db_xref "SPD:21/21H08" ; GO "GO:0005739; mitochondrion
GO:0003867; 4-aminobutyrate transaminase activity
GO:0030170; pyridoxal phosphate binding
GO:0009450; gamma-aminobutyric acid catabolic process
GO:0006536; glutamate metabolic process
GO:0019740; nitrogen utilization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "uga1" ; product "4-aminobutyrate aminotransferase (GABA transaminase)" ; EC_number "2.6.1.19" ;
chromosome1 GeneDB CDS 5223184 5224608 . + . mRNA SPAC19D5.07 ; colour "2" ;
chromosome1 GeneDB CDS_parts 5225237 5225971 . - . mRNA SPAC14C4.01c ; db_xref "SPD:08/08H02" ; systematic_id "SPAC14C4.01c" ; synonym "SPAC19D5.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; product "DUF1770 family protein" ;
chromosome1 GeneDB CDS 5225237 5225971 . - . mRNA SPAC14C4.01c ; colour "10" ;
chromosome1 GeneDB misc_feature 5225287 5225383 . + . misc_feature unknown_4320 ; note "nominal overlap with cosmid SPAC14C4 and cosmid SPAC19D5" ;
chromosome1 GeneDB 3'-UTR 5226278 5226405 . - . mRNA SPAC14C4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC14C4.02c" ; systematic_id "SPAC14C4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5226406 5229652 . - . mRNA SPAC14C4.02c ; systematic_id "SPAC14C4.02c" ; colour "2" ; gene "smc5 ||| SPAC14C4.02c" ; Alias "smc5" ; db_xref "SPD:30/30C03" ; synonym "spr18" ; controlled_curation "term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YOL034W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10747036; date=20100727" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0005634; nucleus
GO:0046982; protein heterodimerization activity
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0048478; replication fork protection
GO:0005524; ATP binding" ; primary_name "smc5" ; product "Smc5-6 complex SMC subunit Smc5" ;
chromosome1 GeneDB CDS 5226406 5229417 . - . mRNA SPAC14C4.02c ; colour "2" ;
chromosome1 GeneDB CDS 5229467 5229652 . - . mRNA SPAC14C4.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 5229418 5229429 . - . misc_feature unknown_4321 ; colour "6" ; note "ttaacgatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5229461 5229466 . - . misc_feature unknown_4322 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5229651 5229747 . - . mRNA SPAC14C4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC14C4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5229798 5229825 . + . mRNA SPAC14C4.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC14C4.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5229826 5230123 . + . mRNA SPAC14C4.16 ; systematic_id "SPAC14C4.16" ; colour "2" ; gene "dad3 ||| SPAC14C4.16" ; Alias "dad3" ; db_xref "SPD:52/52C08" ; GO "GO:0042729; DASH complex
GO:0007052; mitotic spindle organization and biogenesis
GO:0031134; sister chromatid biorientation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR233W-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "dad3" ; product "DASH complex subunit Dad3" ;
chromosome1 GeneDB CDS 5229826 5229903 . + . mRNA SPAC14C4.16 ; colour "2" ;
chromosome1 GeneDB CDS 5229941 5230123 . + . mRNA SPAC14C4.16 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5230124 5230900 . + . mRNA SPAC14C4.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC14C4.16" ; systematic_id "SPAC14C4.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5231140 5232566 . + . mRNA SPAC14C4.03 ; systematic_id "SPAC14C4.03" ; colour "2" ; gene "mek1 ||| SPAC14C4.03" ; Alias "mek1" ; db_xref "SPD:44/44F05" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0051598; meiotic recombination checkpoint
GO:0051598; meiotic recombination checkpoint
GO:0090006; regulation of linear element formation
GO:0030998; linear element
GO:0005524; ATP binding
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:12482912; date=19700101 ||| term=target is Cdc25; qualifier=inhibits; db_xref=PMID:12482912; date=19700101 ||| term=orthologous to S. cerevisiae YOR351C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12032093; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mek1" ; product "Cds1/Rad53/Chk2 family protein kinase Mek1" ; EC_number "2.7.11.1" ;
chromosome1 GeneDB CDS 5231140 5231296 . + . mRNA SPAC14C4.03 ; colour "2" ;
chromosome1 GeneDB CDS 5231337 5231871 . + . mRNA SPAC14C4.03 ; colour "2" ;
chromosome1 GeneDB CDS 5231921 5232566 . + . mRNA SPAC14C4.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 5231297 5231302 . + . misc_feature unknown_4323 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5231323 5231336 . + . misc_feature unknown_4324 ; colour "6" ; note "ttgacatatattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5231872 5231877 . + . misc_feature unknown_4325 ; colour "6" ; note "gtaagt, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5231907 5231920 . + . misc_feature unknown_4326 ; colour "6" ; note "ttaatattccttag, splice donor sequence" ;
chromosome1 GeneDB tRNA 5232917 5232987 . - . tRNA SPATRNAASP.02 ; systematic_id "SPATRNAASP.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033450; GTC codon-amino acid adaptor activity" ; product "tRNA Aspartic acid" ; note "tRNA Asp anticodon GTC, Cove score 70.49" ;
chromosome1 GeneDB 5'-UTR 5234088 5234292 . + . mRNA SPAC14C4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC14C4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5234293 5235096 . + . mRNA SPAC14C4.04 ; systematic_id "SPAC14C4.04" ; colour "12" ; gene "B22918-2 ||| SPAC14C4.04" ; db_xref "SPD:10/10B12" ; Alias "B22918-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, identified in S. pombe only; date=20081110" ; primary_name "B22918-2" ; product "hypothetical protein" ;
chromosome1 GeneDB CDS 5234293 5235096 . + . mRNA SPAC14C4.04 ; colour "12" ;
chromosome1 GeneDB 3'-UTR 5235097 5235521 . + . mRNA SPAC14C4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC14C4.04" ; systematic_id "SPAC14C4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5235682 5235783 . - . mRNA SPAC14C4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC14C4.05c" ; systematic_id "SPAC14C4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5235784 5238318 . - . mRNA SPAC14C4.05c ; systematic_id "SPAC14C4.05c" ; colour "7" ; db_xref "SPD:29/29C08" ; Alias "heh2" ; synonym "man1 ||| mug61" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR458C and YML034W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Lap-Emerin- Man domain protein; date=20090625 ||| term=LEM domain; date=20090625" ; GO "; nuclear membrane
GO:0000070; mitotic sister chromatid segregation" ; primary_name "heh2" ; product "LEM domain protein Man1, Sad1 interacting factor (predicted)" ; reserved_name "heh2" ;
chromosome1 GeneDB CDS 5235784 5238318 . - . mRNA SPAC14C4.05c ; colour "7" ;
chromosome1 GeneDB CDS_parts 5238805 5239817 . - . mRNA SPAC14C4.06c ; systematic_id "SPAC14C4.06c" ; colour "7" ; gene "SPAC14C4.06c" ; note "novel or divergent zinc finger, no family identified but similar to zf-CCCH" ; db_xref "SPD:15/15A09" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0008143; poly(A) binding
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; qualifier=inferred from context; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YGL122C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "poly(A) binding protein Nab2 (predicted)" ;
chromosome1 GeneDB CDS 5238805 5239047 . - . mRNA SPAC14C4.06c ; colour "7" ;
chromosome1 GeneDB CDS 5239094 5239192 . - . mRNA SPAC14C4.06c ; colour "7" ;
chromosome1 GeneDB CDS 5239236 5239817 . - . mRNA SPAC14C4.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 5239048 5239060 . - . misc_feature unknown_4327 ; colour "6" ; note "ctaacgtatacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5239088 5239093 . - . misc_feature unknown_4328 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5239193 5239204 . - . misc_feature unknown_4329 ; colour "6" ; note "ctaactctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5239230 5239235 . - . misc_feature unknown_4330 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5239816 5240194 . - . mRNA SPAC14C4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC14C4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5240466 5240791 . + . mRNA SPAC14C4.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC14C4.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5240792 5242726 . + . mRNA SPAC14C4.07 ; db_xref "SPD:26/26H04" ; systematic_id "SPAC14C4.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL163C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0016021; integral to membrane
GO:0055085; transmembrane transport" ; gene "SPAC14C4.07" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB CDS 5240792 5242726 . + . mRNA SPAC14C4.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5242727 5242915 . + . mRNA SPAC14C4.07 ; ID "SPAC14C4.07" ; db_xref "SPD:26/26H04" ; systematic_id "SPAC14C4.07" ; gene "SPAC14C4.07" ; note "mRNA from spc03287" ;
chromosome1 GeneDB CDS_parts 5243071 5243610 . + . mRNA SPAC14C4.08 ; systematic_id "SPAC14C4.08" ; colour "2" ; gene "mug5 ||| SPAC14C4.08" ; Alias "mug5" ; db_xref "SPD:42/42C06" ; GO "GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug5" ; product "meiotically upregulated gene Mug5" ;
chromosome1 GeneDB CDS 5243071 5243610 . + . mRNA SPAC14C4.08 ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5243953 5244206 . + . mRNA SPAC14C4.09 ; Alias "agn1" ; ID "SPAC14C4.09" ; systematic_id "SPAC14C4.09" ; primary_name "agn1" ; gene "agn1 ||| SPAC14C4.09" ; note "mRNA from spc11473 399 269" ;
chromosome1 GeneDB CDS_parts 5244207 5245481 . + . mRNA SPAC14C4.09 ; systematic_id "SPAC14C4.09" ; colour "2" ; gene "agn1 ||| SPAC14C4.09" ; db_xref "SPD:22/22B03" ; Alias "agn1" ; GO "GO:0043188; cell septum edging
GO:0009986; cell surface
GO:0005576; extracellular region
GO:0051118; glucan endo-1,3-alpha-glucosidase activity
GO:0030995; cell septum edging catabolism
GO:0044247; cellular polysaccharide catabolic process
GO:0046379; extracellular polysaccharide metabolic process
GO:0009313; oligosaccharide catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15194814; cv=gene_ex; date=20060818 ||| term=subunit composition, monomeric; cv=subunit_composition; db_xref=PMID:15194814; date=20060818 ||| term=gene expression, promoter contains UAS; qualifier=required; db_xref=PMID:16678171; cv=gene_ex; date=20060818 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; db_xref=PMID:15194814; cv=warning; date=20100123 ||| term=phenotype, colony morphology, clumped cells; db_xref=PMID:15194814; date=20100917" ; primary_name "agn1" ; product "glucan endo-1,3-alpha-glucosidase Agn1" ; EC_number "3.2.1.59" ;
chromosome1 GeneDB CDS 5244207 5245481 . + . mRNA SPAC14C4.09 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5245482 5245903 . + . mRNA SPAC14C4.09 ; Alias "agn1" ; ID "SPAC14C4.09" ; db_xref "PMID:15194814 ||| SPD:22/22B03" ; systematic_id "SPAC14C4.09" ; primary_name "agn1" ; gene "agn1 ||| SPAC14C4.09" ;
chromosome1 GeneDB CDS_parts 5246039 5247090 . - . mRNA SPAC14C4.10c ; db_xref "SPD:16/16A10" ; systematic_id "SPAC14C4.10c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0009134; nucleoside diphosphate catabolism
GO:0016787; hydrolase activity" ; gene "SPAC14C4.10c" ; product "Nudix family hydrolase" ; EC_number "3.-.-.-" ;
chromosome1 GeneDB CDS 5246039 5246610 . - . mRNA SPAC14C4.10c ; colour "10" ;
chromosome1 GeneDB CDS 5246673 5247090 . - . mRNA SPAC14C4.10c ; colour "10" ;
chromosome1 GeneDB misc_feature 5246611 5246630 . - . misc_feature unknown_4331 ; colour "6" ; note "ctaactttatacttccacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5246667 5246672 . - . misc_feature unknown_4332 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5247730 5247755 . + . mRNA SPAC14C4.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC14C4.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5247756 5250167 . + . mRNA SPAC14C4.11 ; db_xref "SPD:28/28F08" ; systematic_id "SPAC14C4.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL004W and YPL019C; date=19700101 ||| term=SPX domain protein; date=19700101 ||| term=EXS family protein; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0000329; vacuolar membrane
GO:0006797; polyphosphate metabolism
GO:0007034; vacuolar transport
GO:0042144; vacuole fusion, non-autophagic
GO:0006914; autophagy" ; gene "SPAC14C4.11" ; product "polyphosphate synthetase (predicted)" ;
chromosome1 GeneDB CDS 5247756 5247923 . + . mRNA SPAC14C4.11 ; colour "7" ;
chromosome1 GeneDB CDS 5248131 5250167 . + . mRNA SPAC14C4.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 5247924 5247929 . + . misc_feature unknown_4333 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5248115 5248130 . + . misc_feature unknown_4334 ; colour "6" ; note "ctaacattttctgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5250168 5250537 . + . mRNA SPAC14C4.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC14C4.11" ; systematic_id "SPAC14C4.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5250647 5251140 . - . mRNA SPAC14C4.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC14C4.12c" ; systematic_id "SPAC14C4.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5251141 5252034 . - . mRNA SPAC14C4.12c ; systematic_id "SPAC14C4.12c" ; colour "2" ; gene "laf1 ||| SPAC14C4.12c" ; Alias "laf1" ; db_xref "SPD:12/12B12" ; GO "GO:0006338; chromatin remodeling
GO:0006355; regulation of transcription, DNA- dependent
GO:0003677; DNA binding
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL034C and YOR338W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "laf1" ; product "clr6 L associated factor 1 Laf1" ;
chromosome1 GeneDB CDS 5251141 5252034 . - . mRNA SPAC14C4.12c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5252033 5252241 . - . mRNA SPAC14C4.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC14C4.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5252427 5252941 . + . misc_RNA SPNCRNA.261 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.261" ; synonym "SPNG996" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5253235 5253357 . + . mRNA SPAC14C4.13 ; Alias "rad17" ; ID "SPAC14C4.13" ; systematic_id "SPAC14C4.13" ; primary_name "rad17" ; gene "rad17 ||| SPAC14C4.13" ; note "mRNA from AU007898 165 1" ;
chromosome1 GeneDB CDS_parts 5253358 5255278 . + . mRNA SPAC14C4.13 ; systematic_id "SPAC14C4.13" ; colour "2" ; gene "rad17 ||| SPAC14C4.13" ; Alias "rad17" ; db_xref "SPD:26/26G07" ; GO "GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0005524; ATP binding
GO:0003689; DNA clamp loader activity
GO:0031573; intra-S DNA damage checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007095; mitotic cell cycle G2/M tansition DNA damage checkpoint" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER173W; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rad17" ; product "RFC related checkpoint protein Rad17" ;
chromosome1 GeneDB CDS 5253358 5253568 . + . mRNA SPAC14C4.13 ; colour "2" ;
chromosome1 GeneDB CDS 5253612 5253715 . + . mRNA SPAC14C4.13 ; colour "2" ;
chromosome1 GeneDB CDS 5253773 5255278 . + . mRNA SPAC14C4.13 ; colour "2" ;
chromosome1 GeneDB misc_feature 5253569 5253574 . + . misc_feature unknown_4335 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5253596 5253611 . + . misc_feature unknown_4336 ; colour "6" ; note "ttaacggtgcgcatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5253716 5253721 . + . misc_feature unknown_4337 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5253758 5253772 . + . misc_feature unknown_4338 ; colour "6" ; note "ctaacaaaatcatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5255279 5255892 . + . mRNA SPAC14C4.13 ; Alias "rad17" ; ID "SPAC14C4.13" ; db_xref "SPD:26/26G07" ; systematic_id "SPAC14C4.13" ; primary_name "rad17" ; gene "rad17 ||| SPAC14C4.13" ; note "mRNA from spc02754 1 156" ;
chromosome1 GeneDB 5'-UTR 5256747 5256780 . + . mRNA SPAC14C4.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC14C4.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5256781 5258829 . + . mRNA SPAC14C4.14 ; systematic_id "SPAC14C4.14" ; colour "2" ; gene "atp1 ||| SPAC14C4.14" ; Alias "atp1" ; db_xref "SPD:37/37C03" ; GO "GO:0005754; proton-transporting ATP synthase, catalytic core (sensu Eukaryota)
GO:0005524; ATP binding
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL099W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp1" ; product "F1-ATPase alpha subunit" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB CDS 5256781 5256843 . + . mRNA SPAC14C4.14 ; colour "2" ;
chromosome1 GeneDB CDS 5257013 5257072 . + . mRNA SPAC14C4.14 ; colour "2" ;
chromosome1 GeneDB CDS 5257342 5258829 . + . mRNA SPAC14C4.14 ; colour "2" ;
chromosome1 GeneDB misc_feature 5256844 5256849 . + . misc_feature unknown_4339 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5256999 5257012 . + . misc_feature unknown_4340 ; colour "6" ; note "ctaattgtccctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5257073 5257078 . + . misc_feature unknown_4341 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5257324 5257341 . + . misc_feature unknown_4342 ; colour "6" ; note "ctaatcgataatttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5258830 5259282 . + . mRNA SPAC14C4.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC14C4.14" ; systematic_id "SPAC14C4.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5259148 5261753 . - . mRNA SPAC14C4.15c ; systematic_id "SPAC14C4.15c" ; colour "7" ; gene "SPAC14C4.15c ||| SPAPJ760.01c" ; db_xref "SPD:38/38F03" ; synonym "SPAPJ760.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR028C and YOR219C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0008239; dipeptidyl-peptidase activity
GO:0016021; integral to membrane" ; product "dipeptidyl peptidase (predicted)" ;
chromosome1 GeneDB CDS 5259148 5260252 . - . mRNA SPAC14C4.15c ; colour "7" ;
chromosome1 GeneDB CDS 5260297 5261753 . - . mRNA SPAC14C4.15c ; colour "7" ;
chromosome1 GeneDB misc_feature 5260253 5260267 . - . misc_feature unknown_4343 ; colour "6" ; note "ctaactttattacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5260291 5260296 . - . misc_feature unknown_4344 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5261318 5261424 . + . misc_feature unknown_4345 ; note "nominal overlap with cosmid SPAC14C4 and PCR product SPAPJ760" ;
chromosome1 GeneDB 5'-UTR 5261752 5261759 . - . mRNA SPAC14C4.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC14C4.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5261936 5262391 . - . mRNA SPAPJ760.02c ; Alias "app1" ; ID "SPAPJ760.02c" ; db_xref "EMBL:D89164" ; systematic_id "SPAPJ760.02c" ; gene "app1 ||| SPAPJ760.02c" ; primary_name "app1" ;
chromosome1 GeneDB CDS_parts 5262392 5265030 . - . mRNA SPAPJ760.02c ; systematic_id "SPAPJ760.02c" ; colour "2" ; gene "app1 ||| SPAPJ760.02c" ; note "divergent repeat containing consensus PVVPE[VA]PSVPQPP[AV][AV] (10)" ; Alias "abp1" ; obsolete_name "app1" ; GO "GO:0003779; actin binding
GO:0030479; actin cortical patch
GO:0030036; actin cytoskeleton organization and biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cofilin/tropomyosin family; date=19700101 ||| term=orthologous to S. cerevisiae YCR088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, repeat containing; date=20100608" ; primary_name "abp1" ; product "cofilin/tropomyosin family, drebrin ortholog Abp1" ;
chromosome1 GeneDB CDS 5262392 5264817 . - . mRNA SPAPJ760.02c ; colour "2" ;
chromosome1 GeneDB CDS 5264883 5265030 . - . mRNA SPAPJ760.02c ; colour "2" ;
chromosome1 GeneDB misc_feature 5264818 5264836 . - . misc_feature unknown_4346 ; colour "6" ; note "ctaactttataattttaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5264877 5264882 . - . misc_feature unknown_4347 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5265029 5265053 . - . mRNA SPAPJ760.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPJ760.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5265443 5265852 . - . mRNA SPAPJ760.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAPJ760.03c" ; systematic_id "SPAPJ760.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5265853 5266353 . - . mRNA SPAPJ760.03c ; systematic_id "SPAPJ760.03c" ; colour "8" ; gene "adg1 ||| SPAPJ760.03c" ; note "ace2 dependent gene" ; Alias "adg1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; cv=gene_ex; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; primary_name "adg1" ; product "sequence orphan" ; reserved_name "adg1" ;
chromosome1 GeneDB CDS 5265853 5266353 . - . mRNA SPAPJ760.03c ; colour "8" ;
chromosome1 GeneDB 5'-UTR 5266352 5266427 . - . mRNA SPAPJ760.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAPJ760.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 5266502 5266614 . + . misc_feature unknown_4348 ; note "nominal overlap with PCR product SPAPJ760 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 5266502 5266615 . + . misc_feature unknown_4349 ; note "nominal overlap with cosmid SPAC2H10, EM:AL034486 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 5266502 5274170 . + . misc_feature unknown_4350 ; note "Low complexity gene free region" ;
chromosome1 GeneDB 5'-UTR 5273084 5274170 . + . mRNA SPAC2H10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2H10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5274171 5275613 . + . mRNA SPAC2H10.01 ; db_xref "SPD:23/23C04" ; systematic_id "SPAC2H10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC2H10.01" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome1 GeneDB CDS 5274171 5275613 . + . mRNA SPAC2H10.01 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5275614 5275942 . + . mRNA SPAC2H10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC2H10.01" ; systematic_id "SPAC2H10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5276195 5276907 . - . mRNA SPAC2H10.02c ; db_xref "SPD:08/08D12" ; systematic_id "SPAC2H10.02c" ; GO "GO:0070682; proteasome regulatory particle assembly
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PDZ domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; gene "SPAC2H10.02c" ; product "26S proteasome regulatory particle assembly protein (predicted)" ;
chromosome1 GeneDB CDS 5276195 5276755 . - . mRNA SPAC2H10.02c ; colour "7" ;
chromosome1 GeneDB CDS 5276827 5276907 . - . mRNA SPAC2H10.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 5276756 5276771 . - . misc_feature unknown_4351 ; colour "6" ; note "ttaataagtgctatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5276821 5276826 . - . misc_feature unknown_4352 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5276906 5276934 . - . mRNA SPAC2H10.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC2H10.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 5277079 5278079 . + . misc_feature unknown_4353 ; note "nominal overlap with cosmid SPAC11E3 and cosmid SPAC2H10" ;
chromosome1 GeneDB 3'-UTR 5277489 5277497 . - . mRNA SPAC11E3.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11E3.01c" ; systematic_id "SPAC11E3.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5277498 5281364 . - . mRNA SPAC11E3.01c ; systematic_id "SPAC11E3.01c" ; colour "2" ; gene "SPAC2H10.03c ||| SPAC11E3.01c ||| swr1" ; Alias "swr1" ; db_xref "SPD:39/39D03" ; synonym "SPAC2H10.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR334W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:cccccccc; date=20090110" ; GO "GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange
GO:0004003; ATP-dependent DNA helicase activity
GO:0005524; ATP binding" ; primary_name "swr1" ; product "SNF2 family helicase Swr1" ;
chromosome1 GeneDB CDS 5277498 5281364 . - . mRNA SPAC11E3.01c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5281363 5281390 . - . mRNA SPAC11E3.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5281940 5285699 . - . mRNA SPAC11E3.02c ; db_xref "SPD:39/39C07" ; systematic_id "SPAC11E3.02c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR296W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC11E3.02c" ; product "C2 domain protein" ;
chromosome1 GeneDB CDS 5281940 5285570 . - . mRNA SPAC11E3.02c ; colour "10" ;
chromosome1 GeneDB CDS 5285617 5285699 . - . mRNA SPAC11E3.02c ; colour "10" ;
chromosome1 GeneDB misc_feature 5285571 5285587 . - . misc_feature unknown_4354 ; colour "6" ; note "ttaaccaacgtatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5285611 5285616 . - . misc_feature unknown_4355 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5285698 5285792 . - . mRNA SPAC11E3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5286117 5286288 . + . mRNA SPAC11E3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 5286182 5286187 . + . misc_feature unknown_4356 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5286207 5286220 . + . misc_feature unknown_4357 ; colour "6" ; note "ctgacatatcaaag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 5286289 5287055 . + . mRNA SPAC11E3.03 ; systematic_id "SPAC11E3.03" ; colour "2" ; gene "pcs1 ||| SPAC11E3.03" ; Alias "pcs1" ; db_xref "SPD:12/12F02" ; GO "GO:0000775; chromosome, pericentric region
GO:0000778; condensed nuclear chromosome kinetochore
GO:0033551; monopolin complex
GO:0005730; nucleolus
GO:0051456; attachment of spindle microtubules to kinetochore during meiosis II
GO:0051315; attachment of spindle microtubules to kinetochore during mitosis
GO:0045144; meiotic sister chromatid segregation
GO:0045144; meiotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YCR086W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; db_xref=PMID:12689592; date=20100709" ; primary_name "pcs1" ; product "chromosome segregation protein Pcs1" ;
chromosome1 GeneDB CDS 5286289 5286562 . + . mRNA SPAC11E3.03 ; colour "2" ;
chromosome1 GeneDB CDS 5286606 5286821 . + . mRNA SPAC11E3.03 ; colour "2" ;
chromosome1 GeneDB CDS 5286877 5287055 . + . mRNA SPAC11E3.03 ; colour "2" ;
chromosome1 GeneDB misc_feature 5286563 5286568 . + . misc_feature unknown_4358 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5286594 5286605 . + . misc_feature unknown_4359 ; colour "6" ; note "cttacattcaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5286822 5286827 . + . misc_feature unknown_4360 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5286856 5286876 . + . misc_feature unknown_4361 ; colour "6" ; note "ctaacaggatattattatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5287056 5287169 . + . mRNA SPAC11E3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11E3.03" ; systematic_id "SPAC11E3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5287180 5287383 . - . mRNA SPAC11E3.04c ; Alias "ubc13" ; ID "SPAC11E3.04c" ; db_xref "SPD:52/52A04" ; systematic_id "SPAC11E3.04c" ; primary_name "ubc13" ; gene "ubc13 ||| spu13 ||| SPAC11E3.04c" ; note "mRNA from AF470232" ;
chromosome1 GeneDB CDS_parts 5287384 5288081 . - . mRNA SPAC11E3.04c ; systematic_id "SPAC11E3.04c" ; colour "2" ; gene "ubc13 ||| spu13 ||| SPAC11E3.04c" ; Alias "ubc13" ; db_xref "SPD:52/52A04" ; synonym "spu13" ; GO "GO:0004842; ubiquitin conjugating enzyme activity
GO:0016567; protein ubiquitination
GO:0006301; postreplication repair
GO:0005515; protein binding
GO:0042803; protein homodimerization activity" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ubc13" ; product "ubiquitin conjugating enzyme Ubc13" ; EC_number "6.3.2.19" ;
chromosome1 GeneDB CDS 5287384 5287556 . - . mRNA SPAC11E3.04c ; colour "2" ;
chromosome1 GeneDB CDS 5287614 5287698 . - . mRNA SPAC11E3.04c ; colour "2" ;
chromosome1 GeneDB CDS 5287851 5288012 . - . mRNA SPAC11E3.04c ; colour "2" ;
chromosome1 GeneDB CDS 5288055 5288081 . - . mRNA SPAC11E3.04c ; colour "2" ;
chromosome1 GeneDB misc_feature 5287557 5287574 . - . misc_feature unknown_4362 ; colour "6" ; note "ctaacattaataaatcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 5287557 5287613 . - . intron SPAC11E3.04c ; Alias "ubc13" ; db_xref "SPD:52/52A04" ; systematic_id "SPAC11E3.04c" ; primary_name "ubc13" ; gene "ubc13 ||| spu13 ||| SPAC11E3.04c" ; note "confirmed by mRNA AF470232" ;
chromosome1 GeneDB misc_feature 5287608 5287613 . - . misc_feature unknown_4363 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5287699 5287712 . - . misc_feature unknown_4364 ; colour "6" ; note "ttaacaactattag, splice branch and acceptor" ;
chromosome1 GeneDB intron 5287699 5287850 . - . intron SPAC11E3.04c ; Alias "ubc13" ; db_xref "SPD:52/52A04" ; systematic_id "SPAC11E3.04c" ; primary_name "ubc13" ; gene "ubc13 ||| spu13 ||| SPAC11E3.04c" ; note "confirmed by mRNA AF470232" ;
chromosome1 GeneDB misc_feature 5287845 5287850 . - . misc_feature unknown_4365 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5288013 5288026 . - . misc_feature unknown_4366 ; colour "6" ; note "ctaataattggtag, splice branch and acceptor" ;
chromosome1 GeneDB intron 5288013 5288054 . - . intron SPAC11E3.04c ; Alias "ubc13" ; db_xref "SPD:52/52A04" ; systematic_id "SPAC11E3.04c" ; primary_name "ubc13" ; gene "ubc13 ||| spu13 ||| SPAC11E3.04c" ; note "confirmed by mRNA AF470232" ;
chromosome1 GeneDB misc_feature 5288049 5288054 . - . misc_feature unknown_4367 ; colour "6" ; note "gtttgc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5288080 5288102 . - . mRNA SPAC11E3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5288265 5288391 . + . mRNA SPAC11E3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5288392 5292363 . + . mRNA SPAC11E3.05 ; db_xref "SPD:52/52B09" ; systematic_id "SPAC11E3.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); qualifier=inferred from context; date=20060726 ||| term=WD repeat protein; date=19700101 ||| term=RWD domain; date=19700101 ||| term=coronin family; date=19700101 ||| term=orthologous to S. cerevisiae YDR128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human WDR559 ortholog; date=20100704" ; colour "10" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0000329; vacuolar membrane (sensu Fungi)" ; gene "SPAC11E3.05" ; product "ubiquitin-protein ligase E3, human WDR559 ortholog" ;
chromosome1 GeneDB CDS 5288392 5292363 . + . mRNA SPAC11E3.05 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 5292364 5292446 . + . mRNA SPAC11E3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11E3.05" ; systematic_id "SPAC11E3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5292795 5294344 . + . mRNA SPAC11E3.06 ; systematic_id "SPAC11E3.06" ; colour "2" ; gene "map1 ||| SPAC11E3.06" ; Alias "map1" ; db_xref "SPD:52/52B03" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0003677; DNA binding
GO:0007532; regulation of transcription, mating- type specific
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is mam2; date=19700101 ||| term=orthologous to S. cerevisiae YMR043W and YMR042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "map1" ; product "MADS-box transcription factor Map1" ;
chromosome1 GeneDB CDS 5292795 5292938 . + . mRNA SPAC11E3.06 ; colour "2" ;
chromosome1 GeneDB CDS 5293023 5293191 . + . mRNA SPAC11E3.06 ; colour "2" ;
chromosome1 GeneDB CDS 5293461 5294344 . + . mRNA SPAC11E3.06 ; colour "2" ;
chromosome1 GeneDB misc_feature 5292939 5292944 . + . misc_feature unknown_4368 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5293009 5293022 . + . misc_feature unknown_4369 ; colour "6" ; note "ctaataattattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5293192 5293197 . + . misc_feature unknown_4370 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5293448 5293460 . + . misc_feature unknown_4371 ; colour "6" ; note "ctaattaccatag, splice branch and acceptor" ;
chromosome1 GeneDB 5'-UTR 5294976 5295020 . + . mRNA SPAC11E3.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5295021 5295704 . + . mRNA SPAC11E3.07 ; systematic_id "SPAC11E3.07" ; colour "7" ; gene "vma4 ||| SPAC11E3.07" ; Alias "vma4" ; db_xref "SPD:52/52A03" ; GO "GO:0000221; vacuolar proton-translocating V-type ATPase, V1 domain
GO:0005524; ATP binding
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR332W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "vma4" ; product "V-type ATPase V1 subunit E (predicted)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB CDS 5295021 5295704 . + . mRNA SPAC11E3.07 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5296049 5296164 . - . mRNA SPAC11E3.08c ; Alias "nse6" ; ID "SPAC11E3.08c" ; db_xref "EMBL:AJ002494 ||| SPD:52/52B04" ; systematic_id "SPAC11E3.08c" ; gene "nse6 ||| cor1 ||| SPAC11E3.08c" ; primary_name "nse6" ; note "mRNA from SPAJ2494" ;
chromosome1 GeneDB CDS_parts 5296165 5297733 . - . mRNA SPAC11E3.08c ; systematic_id "SPAC11E3.08c" ; colour "2" ; gene "nse6 ||| cor1 ||| SPAC11E3.08c" ; Alias "nse6" ; db_xref "SPD:52/52B04" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0048478; replication fork protection
GO:0048478; replication fork protection
GO:0042803; protein homodimerization activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16478984; date=20060504 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; db_xref=PMID:16478984; date=20100727 ||| term=orthologous to S. cerevisiae YER038C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "nse6" ; product "Smc5-6 complex non-SMC subunit Nse6" ;
chromosome1 GeneDB CDS 5296165 5297733 . - . mRNA SPAC11E3.08c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5297734 5297794 . - . mRNA SPAC11E3.08c ; Alias "nse6" ; ID "SPAC11E3.08c" ; db_xref "EMBL:AJ002494" ; systematic_id "SPAC11E3.08c" ; gene "nse6 ||| cor1 ||| SPAC11E3.08c" ; primary_name "nse6" ; note "mRNA from SPAJ2494" ;
chromosome1 GeneDB 5'-UTR 5298771 5298837 . + . mRNA SPAC11E3.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5298838 5299854 . + . mRNA SPAC11E3.09 ; systematic_id "SPAC11E3.09" ; colour "2" ; gene "pyp3 ||| SPAC11E3.09" ; Alias "pyp3" ; db_xref "SPD:52/52A10" ; GO "GO:0004725; protein tyrosine phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0007346; regulation of progression through mitotic cell cycle
GO:0005737; cytoplasm
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:1464318; date=20101124 ||| term=phenotype, cell morphology, small cells; qualifier=overexpression; db_xref=PMID:1464318; date=20101124 ||| term=target is Cdc2; db_xref=PMID:1464318; date=19700101 ||| term=orthologous to S. cerevisiae YDL230W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pyp3" ; product "protein-tyrosine phosphatase Pyp3" ; EC_number "3.1.3.48" ;
chromosome1 GeneDB CDS 5298838 5299125 . + . mRNA SPAC11E3.09 ; colour "2" ;
chromosome1 GeneDB CDS 5299231 5299854 . + . mRNA SPAC11E3.09 ; colour "2" ;
chromosome1 GeneDB misc_feature 5299126 5299131 . + . misc_feature unknown_4372 ; colour "6" ; note "gttagg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5299204 5299230 . + . misc_feature unknown_4373 ; colour "6" ; note "cttacttagtcttctttatttatatag, splice branch and accep tor" ;
chromosome1 GeneDB 3'-UTR 5299855 5300086 . + . mRNA SPAC11E3.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11E3.09" ; systematic_id "SPAC11E3.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5300696 5300781 . + . mRNA SPAC11E3.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5300782 5301642 . + . mRNA SPAC11E3.10 ; db_xref "SPD:52/52A07" ; systematic_id "SPAC11E3.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR112W-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC11E3.10" ; product "VanZ-like family protein" ;
chromosome1 GeneDB CDS 5300782 5300843 . + . mRNA SPAC11E3.10 ; colour "10" ;
chromosome1 GeneDB CDS 5300925 5300948 . + . mRNA SPAC11E3.10 ; colour "10" ;
chromosome1 GeneDB CDS 5301116 5301302 . + . mRNA SPAC11E3.10 ; colour "10" ;
chromosome1 GeneDB CDS 5301350 5301379 . + . mRNA SPAC11E3.10 ; colour "10" ;
chromosome1 GeneDB CDS 5301457 5301642 . + . mRNA SPAC11E3.10 ; colour "10" ;
chromosome1 GeneDB misc_feature 5300844 5300849 . + . misc_feature unknown_4374 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5300905 5300924 . + . misc_feature unknown_4375 ; colour "6" ; note "ctaaccaattttcactttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5300949 5300954 . + . misc_feature unknown_4376 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5301015 5301040 . + . misc_feature unknown_4377 ; colour "6" ; note "cttattattactttatcgaaattcag, splice branch and accept or" ;
chromosome1 GeneDB misc_feature 5301303 5301308 . + . misc_feature unknown_4378 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5301333 5301349 . + . misc_feature unknown_4379 ; colour "6" ; note "ctaacttctctatatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5301380 5301385 . + . misc_feature unknown_4380 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5301442 5301456 . + . misc_feature unknown_4381 ; colour "6" ; note "ctaatgctatgccag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5301643 5301901 . + . mRNA SPAC11E3.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11E3.10" ; systematic_id "SPAC11E3.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5302349 5302568 . - . mRNA SPAC11E3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11E3.11c" ; systematic_id "SPAC11E3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5302569 5305397 . - . mRNA SPAC11E3.11c ; db_xref "SPD:52/52B08" ; systematic_id "SPAC11E3.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YBL060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0005085; guanyl-nucleotide exchange factor activity" ; gene "SPAC11E3.11c" ; product "guanyl-nucleotide exchange factor (predicted)" ;
chromosome1 GeneDB CDS 5302569 5305397 . - . mRNA SPAC11E3.11c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5305396 5305648 . - . mRNA SPAC11E3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5305699 5305837 . + . mRNA SPAC11E3.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5305838 5306434 . + . mRNA SPAC11E3.12 ; db_xref "SPD:52/52A01" ; systematic_id "SPAC11E3.12" ; controlled_curation "term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC11E3.12" ; product "conserved eukaryotic protein" ; note "this coding sequence was previously annotated to the NADH dehydrogenase of the mitochondrial respiratory chain complex I. This annotation was removed due to lack of the other 40 subunits that are present in that complex in mammals (PMID:1518044). It is suggested that this protein may have an alternative role in fatty acid biosynthesis (PMID:1518044)." ;
chromosome1 GeneDB CDS 5305838 5306043 . + . mRNA SPAC11E3.12 ; colour "10" ;
chromosome1 GeneDB CDS 5306103 5306265 . + . mRNA SPAC11E3.12 ; colour "10" ;
chromosome1 GeneDB CDS 5306315 5306434 . + . mRNA SPAC11E3.12 ; colour "10" ;
chromosome1 GeneDB misc_feature 5306044 5306049 . + . misc_feature unknown_4382 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5306089 5306102 . + . misc_feature unknown_4383 ; colour "6" ; note "ctaaccaaatgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5306266 5306271 . + . misc_feature unknown_4384 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5306295 5306314 . + . misc_feature unknown_4385 ; colour "6" ; note "ctaatttctattgcttttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5306855 5307064 . - . mRNA SPAC11E3.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11E3.13c" ; systematic_id "SPAC11E3.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5307065 5308597 . - . mRNA SPAC11E3.13c ; systematic_id "SPAC11E3.13c" ; colour "2" ; gene "SPAC11E3.13c ||| gas5" ; Alias "gas5" ; db_xref "SPD:52/52B02" ; GO "GO:0009277; fungal type cell wall
GO:0042124; 1,3-beta-glucanosyltransferase activity
GO:0031505; cell wall organization and biogenesis
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL030W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; primary_name "gas5" ; product "cell wall protein Gas5, 1,3-beta- glucanosyltransferase (predicted)" ;
chromosome1 GeneDB CDS 5307065 5308597 . - . mRNA SPAC11E3.13c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5308596 5309051 . - . mRNA SPAC11E3.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_feature 5308597 5312420 . + . misc_feature unknown_4386 ; note "low complexity gene free region" ;
chromosome1 GeneDB misc_feature 5309416 5311185 . + . misc_feature unknown_4387 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG1015 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5311529 5312419 . + . mRNA SPAC11E3.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5312420 5314186 . + . mRNA SPAC11E3.14 ; db_xref "SPD:52/52B06" ; systematic_id "SPAC11E3.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL082W and YKR018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC11E3.14" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB CDS 5312420 5314186 . + . mRNA SPAC11E3.14 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 5314187 5314362 . + . mRNA SPAC11E3.14 ; ID "SPAC11E3.14" ; db_xref "SPD:52/52B06" ; systematic_id "SPAC11E3.14" ; gene "SPAC11E3.14" ; note "mRNA from SPD214" ;
chromosome1 GeneDB misc_feature 5314581 5315510 . + . misc_feature unknown_4388 ; note "nominal overlap with plasmid SPAP8A3 and SPAC11E3" ;
chromosome1 GeneDB promoter 5314752 5314761 . + . promoter unknown_4389 ; colour "4" ; note "Homol E box" ;
chromosome1 GeneDB promoter 5314772 5314779 . + . promoter unknown_4390 ; colour "4" ; note "Homol D box" ;
chromosome1 GeneDB 5'-UTR 5314828 5314861 . + . mRNA SPAC11E3.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC11E3.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5314862 5315317 . + . mRNA SPAC11E3.15 ; systematic_id "SPAC11E3.15" ; colour "7" ; db_xref "SPD:04/04A11" ; Alias "rpl22" ; synonym "SPAP8A3.01" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=orthologous to S. cerevisiae YLR061W and YFL034C-A; date=19700101 ||| term=human RPL22 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; primary_name "rpl22" ; product "60S ribosomal protein L22 (predicted)" ;
chromosome1 GeneDB CDS 5314862 5314867 . + . mRNA SPAC11E3.15 ; colour "7" ;
chromosome1 GeneDB CDS 5314914 5315165 . + . mRNA SPAC11E3.15 ; colour "7" ;
chromosome1 GeneDB CDS 5315222 5315317 . + . mRNA SPAC11E3.15 ; colour "7" ;
chromosome1 GeneDB misc_feature 5314868 5314873 . + . misc_feature unknown_4391 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 5314868 5314913 . + . intron SPAC11E3.15 ; Alias "rpl22" ; db_xref "SPD:04/04A11" ; systematic_id "SPAC11E3.15" ; primary_name "rpl22" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5314900 5314913 . + . misc_feature unknown_4392 ; colour "6" ; note "ctaactgtcaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5314900 5314919 . + . misc_feature unknown_4393 ; colour "6" ; note "ctaactgtcaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5315166 5315171 . + . misc_feature unknown_4394 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB intron 5315166 5315221 . + . intron SPAC11E3.15 ; Alias "rpl22" ; db_xref "EMBL:AB178219 ||| SPD:04/04A11" ; systematic_id "SPAC11E3.15" ; primary_name "rpl22" ; note "confirmed by mRNA" ;
chromosome1 GeneDB misc_feature 5315205 5315221 . + . misc_feature unknown_4395 ; colour "6" ; note "ctaaccaaaatccgtag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5315318 5315379 . + . mRNA SPAC11E3.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC11E3.15" ; systematic_id "SPAC11E3.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5315814 5316491 . - . mRNA SPAP8A3.02c ; Alias "ofd2" ; systematic_id "SPAP8A3.02c" ; colour "2" ; GO "GO:0071456; cellular response to hypoxia" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulated by Sre1; db_xref=PMID:18418381; cv=gene_ex; date=20080430 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPAP8A3.02c ||| ofd2" ; primary_name "ofd2" ; product "2 OG-Fe(II) oxygenase superfamily protein Ofd2" ;
chromosome1 GeneDB CDS 5315814 5316491 . - . mRNA SPAP8A3.02c ; colour "2" ;
chromosome1 GeneDB misc_RNA 5317424 5317575 . + . misc_RNA SPNCRNA.263 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.263" ; synonym "SPNG1019" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5317910 5317938 . + . mRNA SPAP8A3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP8A3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5317939 5319300 . + . mRNA SPAP8A3.03 ; systematic_id "SPAP8A3.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060611 ||| term=orthologous to S. cerevisiae YIL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; colour "7" ; GO "GO:0006829; zinc ion transport
GO:0006882; zinc ion homeostasis
GO:0005385; zinc ion transporter activity
GO:0030176; integral to endoplasmic reticulum membrane" ; gene "SPAP8A3.03" ; product "ZIP zinc transporter 1 (predicted)" ;
chromosome1 GeneDB CDS 5317939 5319300 . + . mRNA SPAP8A3.03 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5319301 5319504 . + . mRNA SPAP8A3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP8A3.03" ; systematic_id "SPAP8A3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5320106 5320398 . - . mRNA SPAP8A3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP8A3.04c" ; systematic_id "SPAP8A3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5320399 5320605 . - . mRNA SPAP8A3.04c ; systematic_id "SPAP8A3.04c" ; colour "2" ; gene "hsp9 ||| scf1 ||| SPAP8A3.04c" ; Alias "hsp9" ; synonym "scf1" ; GO "GO:0000915; cytokinesis, contractile ring formation
GO:0034605; cellular response to heat
GO:0007009; plasma membrane organization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL014W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure conflict; db_xref=PMID:8654972; date=20100810" ; primary_name "hsp9" ; product "heat shock protein Hsp9" ;
chromosome1 GeneDB CDS 5320399 5320605 . - . mRNA SPAP8A3.04c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5322202 5322526 . + . mRNA SPAP8A3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP8A3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5322527 5324806 . + . mRNA SPAP8A3.05 ; systematic_id "SPAP8A3.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR076C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005525; GTP binding
GO:0006402; mRNA catabolic process
GO:0000178; exosome (RNase complex)" ; gene "SPAP8A3.05" ; product "ski complex interacting GTPase (predicted)" ;
chromosome1 GeneDB CDS 5322527 5322722 . + . mRNA SPAP8A3.05 ; colour "7" ;
chromosome1 GeneDB CDS 5322778 5323251 . + . mRNA SPAP8A3.05 ; colour "7" ;
chromosome1 GeneDB CDS 5323312 5324283 . + . mRNA SPAP8A3.05 ; colour "7" ;
chromosome1 GeneDB CDS 5324324 5324408 . + . mRNA SPAP8A3.05 ; colour "7" ;
chromosome1 GeneDB CDS 5324446 5324806 . + . mRNA SPAP8A3.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 5322723 5322728 . + . misc_feature unknown_4396 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5322765 5322777 . + . misc_feature unknown_4397 ; colour "6" ; note "ttaacattcatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5323252 5323257 . + . misc_feature unknown_4398 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5323297 5323311 . + . misc_feature unknown_4399 ; colour "6" ; note "ctaattgttaaacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5324284 5324289 . + . misc_feature unknown_4400 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5324311 5324323 . + . misc_feature unknown_4401 ; colour "6" ; note "ttaatcaaaaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5324409 5324414 . + . misc_feature unknown_4402 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5324435 5324445 . + . misc_feature unknown_4403 ; colour "6" ; note "ctaataaatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5324807 5325009 . + . mRNA SPAP8A3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP8A3.05" ; systematic_id "SPAP8A3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 5325149 5325497 . - . LTR unknown_4404 ; note "TF2 LTR" ;
chromosome1 GeneDB CDS_parts 5325611 5326261 . + . mRNA SPAP8A3.06 ; systematic_id "SPAP8A3.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15121844; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; qualifier=required; date=19700101 ||| term=rrm RNA recognition motif ; qualifier=required; date=19700101 ||| term=complementation, functionally complemented by human U2AF35; cv=complementation; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "2" ; GO "GO:0000243; commitment complex
GO:0000349; generation of catalytic spliceosome for first transesterification step
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0003723; RNA binding
GO:0005686; snRNP U2" ; gene "SPAP8A3.06" ; product "U2AF small subunit, U2AF-23" ;
chromosome1 GeneDB CDS 5325611 5326261 . + . mRNA SPAP8A3.06 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5326262 5326328 . + . mRNA SPAP8A3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP8A3.06" ; systematic_id "SPAP8A3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5326439 5326719 . - . mRNA SPAP8A3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP8A3.07c" ; systematic_id "SPAP8A3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5326720 5328109 . - . mRNA SPAP8A3.07c ; systematic_id "SPAP8A3.07c" ; colour "7" ; GO "GO:0003849; 3-deoxy-7-phosphoheptulonate synthase activity
GO:0009073; aromatic amino acid family biosynthesis
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR035W and YBR249C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPAP8A3.07c" ; product "phospho-2-dehydro-3-deoxyheptonate aldolase (predicted)" ; EC_number "2.5.1.54" ;
chromosome1 GeneDB CDS 5326720 5327829 . - . mRNA SPAP8A3.07c ; colour "7" ;
chromosome1 GeneDB CDS 5328101 5328109 . - . mRNA SPAP8A3.07c ; colour "7" ;
chromosome1 GeneDB misc_feature 5327830 5327847 . - . misc_feature unknown_4405 ; colour "6" ; note "ctaacattattcaattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5328095 5328100 . - . misc_feature unknown_4406 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5328108 5328194 . - . mRNA SPAP8A3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP8A3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5328400 5329064 . + . misc_RNA SPNCRNA.525 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.525" ; synonym "SPNG1024-25" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5329186 5329217 . + . mRNA SPAP8A3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP8A3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5329218 5329906 . + . mRNA SPAP8A3.08 ; Alias "cdc4" ; systematic_id "SPAP8A3.08" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11087750; date=19700101 ||| term=phenotype, cell morphology, elongated dumbbell; qualifier=deletion; db_xref=PMID:958201; date=20100802 ||| term=EF hand; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15195092; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YGL106W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0005515; protein binding
GO:0016460; myosin II complex
GO:0005509; calcium ion binding" ; gene "cdc4 ||| SPAP8A3.08" ; primary_name "cdc4" ; product "myosin II light chain" ;
chromosome1 GeneDB CDS 5329218 5329248 . + . mRNA SPAP8A3.08 ; colour "2" ;
chromosome1 GeneDB CDS 5329301 5329432 . + . mRNA SPAP8A3.08 ; colour "2" ;
chromosome1 GeneDB CDS 5329506 5329646 . + . mRNA SPAP8A3.08 ; colour "2" ;
chromosome1 GeneDB CDS 5329713 5329805 . + . mRNA SPAP8A3.08 ; colour "2" ;
chromosome1 GeneDB CDS 5329878 5329906 . + . mRNA SPAP8A3.08 ; colour "2" ;
chromosome1 GeneDB misc_feature 5329249 5329254 . + . misc_feature unknown_4407 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5329286 5329300 . + . misc_feature unknown_4408 ; colour "6" ; note "ttaacgaaaagatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5329433 5329438 . + . misc_feature unknown_4409 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5329495 5329505 . + . misc_feature unknown_4410 ; colour "6" ; note "ctaattggtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5329647 5329652 . + . misc_feature unknown_4411 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5329700 5329712 . + . misc_feature unknown_4412 ; colour "6" ; note "ctaattgtatcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5329806 5329811 . + . misc_feature unknown_4413 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5329861 5329877 . + . misc_feature unknown_4414 ; colour "6" ; note "ctaactgcttcctttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5330229 5330518 . - . mRNA SPAP8A3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP8A3.09c" ; systematic_id "SPAP8A3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5330519 5332665 . - . mRNA SPAP8A3.09c ; systematic_id "SPAP8A3.09c" ; colour "2" ; gene "paa1 ||| SPAP8A3.09c" ; note "we predict MQTEN at N terminus instead of MLDNS" ; Alias "paa1" ; GO "GO:0000159; protein phosphatase type 2A complex
GO:0030952; establishment and/or maintenance of cytoskeleton polarity
GO:0006470; protein amino acid dephosphorylation
GO:0019888; protein phosphatase regulator activity
GO:0006417; regulation of translation
GO:0007094; mitotic cell cycle spindle assembly checkpoint" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9078365O; date=19700101 ||| term=orthologous to S. cerevisiae YAL016W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "paa1" ; product "protein phosphatase regulatory subunit Paa1" ;
chromosome1 GeneDB CDS 5330519 5330779 . - . mRNA SPAP8A3.09c ; colour "2" ;
chromosome1 GeneDB CDS 5330825 5331162 . - . mRNA SPAP8A3.09c ; colour "2" ;
chromosome1 GeneDB CDS 5331218 5331318 . - . mRNA SPAP8A3.09c ; colour "2" ;
chromosome1 GeneDB CDS 5331380 5332283 . - . mRNA SPAP8A3.09c ; colour "2" ;
chromosome1 GeneDB CDS 5332392 5332497 . - . mRNA SPAP8A3.09c ; colour "2" ;
chromosome1 GeneDB CDS 5332552 5332599 . - . mRNA SPAP8A3.09c ; colour "2" ;
chromosome1 GeneDB CDS 5332651 5332665 . - . mRNA SPAP8A3.09c ; colour "2" ;
chromosome1 GeneDB misc_feature 5330780 5330793 . - . misc_feature unknown_4415 ; colour "6" ; note "ctaacgtattttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5330819 5330824 . - . misc_feature unknown_4416 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5331163 5331176 . - . misc_feature unknown_4417 ; colour "6" ; note "ctaactcactttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5331212 5331217 . - . misc_feature unknown_4418 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5331319 5331335 . - . misc_feature unknown_4419 ; colour "6" ; note "ctaatcgttatatttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5331374 5331379 . - . misc_feature unknown_4420 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5332284 5332303 . - . misc_feature unknown_4421 ; colour "6" ; note "ctaacattccttgaatacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5332386 5332391 . - . misc_feature unknown_4422 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5332498 5332513 . - . misc_feature unknown_4423 ; colour "6" ; note "ctgactattgttaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5332546 5332551 . - . misc_feature unknown_4424 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5332600 5332619 . - . misc_feature unknown_4425 ; colour "6" ; note "ttaaccacgactatttatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5332645 5332650 . - . misc_feature unknown_4426 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5332664 5332706 . - . mRNA SPAP8A3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP8A3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5334103 5334177 . + . mRNA SPAP8A3.10 ; ID "SPAP8A3.10" ; systematic_id "SPAP8A3.10" ; gene "SPAP8A3.10" ; note "mRNA from AU009702" ;
chromosome1 GeneDB CDS_parts 5334178 5334760 . + . mRNA SPAP8A3.10 ; systematic_id "SPAP8A3.10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR193C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0006627; mitochondrial protein processing during import
GO:0031314; extrinsic to mitochondrial inner membrane" ; gene "SPAP8A3.10" ; product "mitochondrial intermembrane space protein sorting protein (predicted)" ;
chromosome1 GeneDB CDS 5334178 5334260 . + . mRNA SPAP8A3.10 ; colour "7" ;
chromosome1 GeneDB CDS 5334328 5334760 . + . mRNA SPAP8A3.10 ; colour "7" ;
chromosome1 GeneDB misc_feature 5334261 5334266 . + . misc_feature unknown_4427 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 5334261 5334327 . + . intron SPAP8A3.10 ; systematic_id "SPAP8A3.10" ; gene "SPAP8A3.10" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5334314 5334327 . + . misc_feature unknown_4428 ; colour "6" ; note "ttaacaatagttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5334761 5334807 . + . mRNA SPAP8A3.10 ; ID "SPAP8A3.10" ; systematic_id "SPAP8A3.10" ; gene "SPAP8A3.10" ; note "mRNA from AU014341" ;
chromosome1 GeneDB 3'-UTR 5334956 5334979 . - . mRNA SPAP8A3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP8A3.11c" ; systematic_id "SPAP8A3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5334980 5336298 . - . mRNA SPAP8A3.11c ; systematic_id "SPAP8A3.11c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=orthologous to S. cerevisiae YHR168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0043022; ribosome binding
GO:0006412; protein biosynthesis
GO:0005743; mitochondrial inner membrane
GO:0019898; extrinsic to membrane
GO:0031314; extrinsic to mitochondrial inner membrane" ; gene "SPAP8A3.11c" ; product "mitochondrial GTPase Mtg2 (predicted)" ;
chromosome1 GeneDB CDS 5334980 5336152 . - . mRNA SPAP8A3.11c ; colour "7" ;
chromosome1 GeneDB CDS 5336212 5336298 . - . mRNA SPAP8A3.11c ; colour "7" ;
chromosome1 GeneDB misc_feature 5336153 5336167 . - . misc_feature unknown_4429 ; colour "6" ; note "ctaattgtgtaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5336206 5336211 . - . misc_feature unknown_4430 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5336297 5336389 . - . mRNA SPAP8A3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP8A3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5336723 5336814 . - . mRNA SPAP8A3.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP8A3.12c" ; systematic_id "SPAP8A3.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5336815 5340639 . - . mRNA SPAP8A3.12c ; Alias "tpp2" ; systematic_id "SPAP8A3.12c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TPP II homolog; date=20090108 ||| term=phenotype, no obvious phenotype; cv=phenotype; db_xref=PMID:aaaaaaaa; date=20090216" ; GO "GO:0005829; cytosol
GO:0008240; tripeptidyl-peptidase" ; gene "tpp2 ||| SPAP8A3.12c" ; primary_name "tpp2" ; product "tripeptidyl-peptidase II Tpp2" ; EC_number "3.4.14.10" ;
chromosome1 GeneDB CDS 5336815 5340639 . - . mRNA SPAP8A3.12c ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5341006 5341026 . - . mRNA SPAP8A3.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP8A3.13c" ; systematic_id "SPAP8A3.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5341027 5342670 . - . mRNA SPAP8A3.13c ; systematic_id "SPAP8A3.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016192; vesicle mediated transport" ; colour "7" ; gene "SPAP8A3.13c" ; product "Vid24 family protein (predicted)" ;
chromosome1 GeneDB CDS 5341027 5342670 . - . mRNA SPAP8A3.13c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5342669 5343372 . - . mRNA SPAP8A3.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP8A3.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5343763 5343873 . - . mRNA SPAP8A3.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP8A3.14c" ; systematic_id "SPAP8A3.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5343874 5345907 . - . mRNA SPAP8A3.14c ; systematic_id "SPAP8A3.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR139C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0042645; mitochondrial nucleoid
GO:0009060; aerobic respiration
GO:0032543; mitochondrial translation" ; gene "SPAP8A3.14c" ; product "mitochondrial inner membrane protein (predicted)" ;
chromosome1 GeneDB CDS 5343874 5345907 . - . mRNA SPAP8A3.14c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5345906 5345959 . - . mRNA SPAP8A3.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAP8A3.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5346202 5346323 . - . mRNA SPAC4D7.01c ; Alias "sec71" ; ID "SPAC4D7.01c" ; db_xref "SPD:48/48H07" ; systematic_id "SPAC4D7.01c" ; primary_name "sec71" ; gene "sec71 ||| SPAP8A3.15c ||| SPAC4D7.01c ||| sec7a" ; note "mRNA from AU011864" ;
chromosome1 GeneDB CDS_parts 5346324 5351808 . - . mRNA SPAC4D7.01c ; systematic_id "SPAC4D7.01c" ; colour "7" ; gene "sec71 ||| SPAP8A3.15c ||| SPAC4D7.01c ||| sec7a" ; Alias "sec71" ; db_xref "SPD:48/48H07" ; obsolete_name "sec7a" ; synonym "sec7a ||| SPAP8A3.15c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR170C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005798; Golgi-associated vesicle
GO:0005086; ARF guanyl-nucleotide exchange factor activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; primary_name "sec71" ; product "Sec7 domain protein, ARF GEF (predicted)" ;
chromosome1 GeneDB CDS 5346324 5350780 . - . mRNA SPAC4D7.01c ; colour "7" ;
chromosome1 GeneDB CDS 5350830 5351808 . - . mRNA SPAC4D7.01c ; colour "7" ;
chromosome1 GeneDB misc_feature 5347049 5352179 . + . misc_feature unknown_4431 ; note "nominal overlap with plasmid SPAP8A3 and cosmid SPAC4D7" ;
chromosome1 GeneDB misc_feature 5350781 5350797 . - . misc_feature unknown_4432 ; colour "6" ; note "ctaacttattgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5350824 5350829 . - . misc_feature unknown_4433 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5351807 5351847 . - . mRNA SPAC4D7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4D7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5352391 5352605 . - . mRNA SPAC4D7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4D7.02c" ; systematic_id "SPAC4D7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5352606 5353672 . - . mRNA SPAC4D7.02c ; db_xref "SPD:16/16D02" ; systematic_id "SPAC4D7.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL206C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0008889; glycerophosphodiester phosphodiesterase activity
GO:0006071; glycerol metabolism
GO:0005739; mitochondrion
GO:0005783; endoplasmic reticulum" ; gene "SPAC4D7.02c" ; product "glycerophosphoryl diester phosphodiesterase (predicted)" ; EC_number "3.1.4.46" ;
chromosome1 GeneDB CDS 5352606 5353449 . - . mRNA SPAC4D7.02c ; colour "7" ;
chromosome1 GeneDB CDS 5353557 5353672 . - . mRNA SPAC4D7.02c ; colour "7" ;
chromosome1 GeneDB misc_feature 5353450 5353478 . - . misc_feature unknown_4434 ; colour "6" ; note "ttaattgtcaaaatccttctccaatttag, splice branch and acc eptor" ;
chromosome1 GeneDB misc_feature 5353551 5353556 . - . misc_feature unknown_4435 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 5353938 5354219 . - . mRNA SPAC4D7.15 ; Alias "new12" ; systematic_id "SPAC4D7.15" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "new12" ; gene "SPAC4D7.15" ; product "sequence orphan" ; note "conserved in japonicus; possibly CAIB/BAIF family protein" ;
chromosome1 GeneDB CDS 5353938 5354219 . - . mRNA SPAC4D7.15 ; colour "8" ;
chromosome1 GeneDB 5'-UTR 5354220 5354307 . - . mRNA SPAC4D7.15 ; db_xref "PMID:21270388" ; systematic_id "SPAC4D7.15" ;
chromosome1 GeneDB 5'-UTR 5354817 5355130 . + . mRNA SPAC4D7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4D7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5355131 5357242 . + . mRNA SPAC4D7.03 ; systematic_id "SPAC4D7.03" ; colour "2" ; gene "pop2 ||| sud1 ||| SPAC4D7.03" ; Alias "pop2" ; db_xref "SPD:27/27H09" ; synonym "sud1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=deletion; date=20100730 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9990507; date=20100730 ||| term=F-box protein; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YFL009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Cig2; db_xref=PMID:14970237; date=20100823" ; GO "GO:0006511; ubiquitin-dependent protein catabolism
GO:0019005; SCF ubiquitin ligase complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030674; protein binding, bridging
GO:0032876; negative regulation of DNA endoreduplication
GO:0005635; nucleus
GO:0007346; regulation of mitotic cell cycle" ; primary_name "pop2" ; product "F-box/WD repeat protein Pop2" ;
chromosome1 GeneDB CDS 5355131 5357242 . + . mRNA SPAC4D7.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5357243 5357293 . + . mRNA SPAC4D7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4D7.03" ; systematic_id "SPAC4D7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5357341 5357391 . - . mRNA SPAC4D7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4D7.04c" ; systematic_id "SPAC4D7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5357392 5358399 . - . mRNA SPAC4D7.04c ; db_xref "SPD:14/14H05" ; systematic_id "SPAC4D7.04c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR002C and YMR101C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005783; endoplasmic reticulum
GO:0004659; prenyltransferase activity
GO:0019408; dolichol biosynthesis
GO:0006487; protein amino acid N-linked glycosylation
GO:0006486; protein amino acid glycosylation" ; gene "SPAC4D7.04c" ; product "cis-prenyltransferase (predicted)" ; EC_number "2.5.1.-" ;
chromosome1 GeneDB CDS 5357392 5357502 . - . mRNA SPAC4D7.04c ; colour "7" ;
chromosome1 GeneDB CDS 5357558 5357774 . - . mRNA SPAC4D7.04c ; colour "7" ;
chromosome1 GeneDB CDS 5357821 5358080 . - . mRNA SPAC4D7.04c ; colour "7" ;
chromosome1 GeneDB CDS 5358193 5358399 . - . mRNA SPAC4D7.04c ; colour "7" ;
chromosome1 GeneDB misc_feature 5357503 5357515 . - . misc_feature unknown_4436 ; colour "6" ; note "ctaattttatcag, splice branch and acceptor" ;
chromosome1 GeneDB intron 5357503 5357557 . - . intron SPAC4D7.04c ; db_xref "SPD:14/14H05" ; systematic_id "SPAC4D7.04c" ; gene "SPAC4D7.04c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5357552 5357557 . - . misc_feature unknown_4437 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5357775 5357790 . - . misc_feature unknown_4438 ; colour "6" ; note "ctaattgacatcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5357815 5357820 . - . misc_feature unknown_4439 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5358081 5358095 . - . misc_feature unknown_4440 ; colour "6" ; note "ctaaccctgcgtaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5358187 5358192 . - . misc_feature unknown_4441 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5358398 5358774 . - . mRNA SPAC4D7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4D7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5358944 5358955 . + . mRNA SPAC4D7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4D7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5358956 5360353 . + . mRNA SPAC4D7.05 ; systematic_id "SPAC4D7.05" ; colour "2" ; gene "sum1 ||| SPAC4D7.05 ||| tif34" ; Alias "sum1" ; db_xref "SPD:40/40E05" ; synonym "tif34" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9560390; date=19700101 ||| term=orthologous to S. cerevisiae YMR146C; date=19700101 ||| term=localization dependent on 26S proteasome; db_xref=PMID:12006658; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Suppressor of Uncontrolled Mitosis; cv=name_description; date=20100607" ; GO "GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
GO:0034399; nuclear periphery
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003743; translation initiation factor activity
GO:0071470; cellular response to osmotic stress
GO:0006413; translational initiation" ; primary_name "sum1" ; product "translation initiation factor eIF3i" ;
chromosome1 GeneDB CDS 5358956 5359018 . + . mRNA SPAC4D7.05 ; colour "2" ;
chromosome1 GeneDB CDS 5359074 5359194 . + . mRNA SPAC4D7.05 ; colour "2" ;
chromosome1 GeneDB CDS 5359551 5360353 . + . mRNA SPAC4D7.05 ; colour "2" ;
chromosome1 GeneDB misc_feature 5359019 5359024 . + . misc_feature unknown_4442 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome1 GeneDB intron 5359019 5359073 . + . intron SPAC4D7.05 ; Alias "sum1" ; db_xref "SPD:40/40E05" ; systematic_id "SPAC4D7.05" ; primary_name "sum1" ; gene "sum1 ||| SPAC4D7.05 ||| tif34" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5359057 5359073 . + . misc_feature unknown_4443 ; colour "6" ; note "ctaatttttgtgtgtag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5359195 5359200 . + . misc_feature unknown_4444 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB intron 5359195 5359550 . + . intron SPAC4D7.05 ; Alias "sum1" ; db_xref "SPD:40/40E05" ; systematic_id "SPAC4D7.05" ; primary_name "sum1" ; gene "sum1 ||| SPAC4D7.05 ||| tif34" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5359538 5359550 . + . misc_feature unknown_4445 ; colour "6" ; note "ctaactgaaacag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5360354 5360504 . + . mRNA SPAC4D7.05 ; Alias "sum1" ; ID "SPAC4D7.05" ; db_xref "SPD:40/40E05" ; systematic_id "SPAC4D7.05" ; primary_name "sum1" ; gene "sum1 ||| SPAC4D7.05 ||| tif34" ; note "mRNA from SPSUM1" ;
chromosome1 GeneDB polyA_site 5360498 5360498 . + . mRNA SPAC4D7.05 ; temporary_systematic_id "SPAC4D7.05" ;
chromosome1 GeneDB CDS_parts 5360572 5361537 . - . mRNA SPAC4D7.06c ; db_xref "SPD:13/13G03" ; systematic_id "SPAC4D7.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR213W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0019354; siroheme biosynthesis
GO:0004325; ferrochelatase activity
GO:0043115; precorrin-2 dehydrogenase activity
GO:0000103; sulfate assimilation" ; gene "SPAC4D7.06c" ; product "siroheme synthase (predicted)" ; EC_number "1.3.1.76 ||| 4.99.1.4" ;
chromosome1 GeneDB CDS 5360572 5361331 . - . mRNA SPAC4D7.06c ; colour "7" ;
chromosome1 GeneDB CDS 5361503 5361537 . - . mRNA SPAC4D7.06c ; colour "7" ;
chromosome1 GeneDB misc_feature 5361332 5361347 . - . misc_feature unknown_4446 ; colour "6" ; note "ctaatctaagctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5361497 5361502 . - . misc_feature unknown_4447 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 5361908 5363710 . - . mRNA SPAC4D7.07c ; db_xref "SPD:45/45H08" ; systematic_id "SPAC4D7.07c" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC4D7.07c" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 5361908 5363710 . - . mRNA SPAC4D7.07c ; colour "8" ;
chromosome1 GeneDB 3'-UTR 5363988 5364359 . - . mRNA SPAC4D7.08c ; Alias "ade4" ; ID "SPAC4D7.08c" ; db_xref "SPD:25/25F11" ; systematic_id "SPAC4D7.08c" ; primary_name "ade4" ; gene "ade4 ||| min13 ||| aza1 ||| SPAC4D7.08c" ; note "mRNA from AU011122" ;
chromosome1 GeneDB CDS_parts 5364360 5365961 . - . mRNA SPAC4D7.08c ; systematic_id "SPAC4D7.08c" ; colour "2" ; gene "ade4 ||| min13 ||| aza1 ||| SPAC4D7.08c" ; Alias "ade4" ; db_xref "SPD:25/25F11" ; synonym "min13 ||| aza1" ; controlled_curation "term=orthologous to S. cerevisiae YMR300C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0009113; purine base biosynthesis
GO:0006164; purine nucleotide biosynthesis
GO:0005737; cytoplasm
GO:0004044; amidophosphoribosyltransferase activity
GO:0006189; 'de novo' IMP biosynthesis" ; primary_name "ade4" ; product "amidophosphoribosyltransferase Ade4" ; EC_number "2.4.2.14" ;
chromosome1 GeneDB CDS 5364360 5365961 . - . mRNA SPAC4D7.08c ; colour "2" ;
chromosome1 GeneDB snoRNA 5366223 5366297 . - . snoRNA SPSNORNA.17 ; Alias "snoR58" ; db_xref "EMBL:AJ617312" ; systematic_id "SPSNORNA.17" ; controlled_curation "term=orthologous to S. cerevisiae snR58; date=20070104" ; primary_name "snoR58" ; gene "snoR58 ||| SPSNORNA.17" ; product "small nucleolar RNA snR58 (predicted)" ;
chromosome1 GeneDB misc_RNA 5366784 5367314 . + . misc_RNA SPNCRNA.264 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.264" ; synonym "SPNG1028" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5367411 5367547 . + . mRNA SPAC4D7.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4D7.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5367548 5369286 . + . mRNA SPAC4D7.09 ; systematic_id "SPAC4D7.09" ; colour "7" ; gene "tif223 ||| SPAC4D7.09" ; Alias "tif223" ; db_xref "SPD:35/35H04" ; GO "; eukaryotic translation initiation factor 2B complex
GO:0006413; translational initiation
GO:0003743; translation initiation factor activity
GO:0005840; ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, leukoencephalopathy; date=20060926 ||| term=disease associated, neurological disorders; date=20060926 ||| term=orthologous to S. cerevisiae YOR260W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tif223" ; product "translation initiation factor eIF2B gamma subunit (predicted)" ;
chromosome1 GeneDB CDS 5367548 5367696 . + . mRNA SPAC4D7.09 ; colour "7" ;
chromosome1 GeneDB CDS 5367821 5368091 . + . mRNA SPAC4D7.09 ; colour "7" ;
chromosome1 GeneDB CDS 5368188 5368659 . + . mRNA SPAC4D7.09 ; colour "7" ;
chromosome1 GeneDB CDS 5368701 5368843 . + . mRNA SPAC4D7.09 ; colour "7" ;
chromosome1 GeneDB CDS 5368915 5369286 . + . mRNA SPAC4D7.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 5367697 5367702 . + . misc_feature unknown_4448 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5367806 5367820 . + . misc_feature unknown_4449 ; colour "6" ; note "ctaaccatgttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5368092 5368097 . + . misc_feature unknown_4450 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5368169 5368187 . + . misc_feature unknown_4451 ; colour "6" ; note "ttaattactcgtcttaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5368660 5368665 . + . misc_feature unknown_4452 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5368688 5368700 . + . misc_feature unknown_4453 ; colour "6" ; note "ctaacaattaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5368844 5368849 . + . misc_feature unknown_4454 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5368900 5368914 . + . misc_feature unknown_4455 ; colour "6" ; note "ctaacagcaaactag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5369287 5369378 . + . mRNA SPAC4D7.09 ; Alias "tif223" ; ID "SPAC4D7.09" ; db_xref "SPD:35/35H04" ; systematic_id "SPAC4D7.09" ; primary_name "tif223" ; gene "tif223 ||| SPAC4D7.09" ; note "mRNA from AU013778" ;
chromosome1 GeneDB 3'-UTR 5369400 5370179 . - . mRNA SPAC4D7.10c ; ID "SPAC4D7.10c" ; db_xref "SPD:25/25F03" ; systematic_id "SPAC4D7.10c" ; gene "SPAC4D7.10c ||| spt20" ; note "mRNA from AU009903" ;
chromosome1 GeneDB intron 5369560 5369727 . - . intron SPAC4D7.10c ; db_xref "SPD:25/25F03" ; systematic_id "SPAC4D7.10c" ; note "confirmed intron" ;
chromosome1 GeneDB snoRNA 5369640 5369686 . - . snoRNA SPSNORNA.18 ; Alias "snoU24" ; systematic_id "SPSNORNA.18" ; primary_name "snoU24" ; gene "snoU24 ||| SPSNORNA.18" ; product "small nucleolar RNA U24" ;
chromosome1 GeneDB intron 5369783 5369973 . - . intron SPAC4D7.10c ; db_xref "SPD:25/25F03" ; systematic_id "SPAC4D7.10c" ; note "confirmed intron" ;
chromosome1 GeneDB CDS_parts 5370180 5371770 . - . mRNA SPAC4D7.10c ; systematic_id "SPAC4D7.10c" ; colour "2" ; gene "SPAC4D7.10c ||| spt20" ; Alias "spt20" ; db_xref "SPD:25/25F03" ; GO "GO:0003712; transcription cofactor activity
GO:0016573; histone acetylation
GO:0006366; transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL148C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=human FAM48A and FAM48B1 and FAM48B2 ortholog; date=20110113 ||| term=warning, ncRNA in intron; date=20110131" ; primary_name "spt20" ; product "SAGA complex subunit Spt20" ;
chromosome1 GeneDB CDS 5370180 5370466 . - . mRNA SPAC4D7.10c ; colour "2" ;
chromosome1 GeneDB CDS 5370554 5371540 . - . mRNA SPAC4D7.10c ; colour "2" ;
chromosome1 GeneDB CDS 5371623 5371770 . - . mRNA SPAC4D7.10c ; colour "2" ;
chromosome1 GeneDB misc_feature 5370467 5370479 . - . misc_feature unknown_4456 ; colour "6" ; note "ctaacagctttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5370548 5370553 . - . misc_feature unknown_4457 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5371541 5371561 . - . misc_feature unknown_4458 ; colour "6" ; note "ctaactgacataatactcaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5371617 5371622 . - . misc_feature unknown_4459 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5371769 5371812 . - . mRNA SPAC4D7.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4D7.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5372031 5372200 . + . mRNA SPAC4D7.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4D7.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5372201 5373204 . + . mRNA SPAC4D7.11 ; systematic_id "SPAC4D7.11" ; colour "10" ; gene "SPAC4D7.11" ; db_xref "SPD:14/14G06" ; Alias "dsc4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, protein coding overlap with adjacent gene; date=20110131" ; primary_name "dsc4" ; product "conserved fungal protein" ; reserved_name "dsc4" ;
chromosome1 GeneDB CDS 5372201 5372301 . + . mRNA SPAC4D7.11 ; colour "10" ;
chromosome1 GeneDB CDS 5372356 5372398 . + . mRNA SPAC4D7.11 ; colour "10" ;
chromosome1 GeneDB CDS 5372503 5373204 . + . mRNA SPAC4D7.11 ; colour "10" ;
chromosome1 GeneDB misc_feature 5372302 5372307 . + . misc_feature unknown_4460 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5372342 5372355 . + . misc_feature unknown_4461 ; colour "6" ; note "ctaattcttgtcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5372399 5372404 . + . misc_feature unknown_4462 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5372486 5372502 . + . misc_feature unknown_4463 ; colour "6" ; note "ttaacataaattgctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5372646 5373190 . - . mRNA SPAC4D7.14 ; db_xref "PMID:21270388" ; systematic_id "SPAC4D7.14" ;
chromosome1 GeneDB CDS_parts 5373191 5373636 . - . mRNA SPAC4D7.14 ; Alias "new13" ; systematic_id "SPAC4D7.14" ; controlled_curation "term=orthologous to S. cerevisiae YGL108C; date=20090814 ||| term=conserved in Fungi; date=20100427 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=warning, protein coding overlap with adjacent gene; date=20110131" ; colour "10" ; primary_name "new13" ; product "conserved fungal protein of unknown function" ;
chromosome1 GeneDB CDS 5373191 5373331 . - . mRNA SPAC4D7.14 ; colour "10" ;
chromosome1 GeneDB CDS 5373412 5373636 . - . mRNA SPAC4D7.14 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 5373205 5373736 . + . mRNA SPAC4D7.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4D7.11" ; systematic_id "SPAC4D7.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5373637 5373658 . - . mRNA SPAC4D7.14 ; db_xref "PMID:21270388" ; systematic_id "SPAC4D7.14" ;
chromosome1 GeneDB 3'-UTR 5374067 5374116 . - . mRNA SPAC4D7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC4D7.12c" ; systematic_id "SPAC4D7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5374117 5374992 . - . mRNA SPAC4D7.12c ; systematic_id "SPAC4D7.12c" ; colour "7" ; gene "fet5 ||| SPAC4D7.12c" ; db_xref "SPD:32/32A05" ; Alias "fet5" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR243W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fet5" ; product "ATP binding protein Fet5 (predicted)" ;
chromosome1 GeneDB CDS 5374117 5374281 . - . mRNA SPAC4D7.12c ; colour "7" ;
chromosome1 GeneDB CDS 5374327 5374992 . - . mRNA SPAC4D7.12c ; colour "7" ;
chromosome1 GeneDB misc_feature 5374282 5374292 . - . misc_feature unknown_4464 ; colour "6" ; note "ctaatgactag, splice branch and acceptor" ;
chromosome1 GeneDB intron 5374282 5374326 . - . intron SPAC4D7.12c ; Alias "fet5" ; db_xref "SPD:32/32A05" ; systematic_id "SPAC4D7.12c" ; primary_name "fet5" ; gene "fet5 ||| SPAC4D7.12c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_feature 5374321 5374326 . - . misc_feature unknown_4465 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5374991 5375000 . - . mRNA SPAC4D7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4D7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5375602 5375611 . + . mRNA SPAC4D7.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC4D7.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5375612 5377699 . + . mRNA SPAC4D7.13 ; systematic_id "SPAC4D7.13" ; colour "2" ; gene "usp104 ||| prp40 ||| SPAC4D7.13" ; Alias "usp104" ; db_xref "SPD:27/27G08" ; synonym "prp40" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=orthologous to S. cerevisiae YKL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0003723; RNA binding
GO:0000243; commitment complex
GO:0005685; snRNP U1
GO:0000395; nuclear mRNA 5'-splice site recognition" ; primary_name "usp104" ; product "U1 snRNP-associated protein Usp104" ;
chromosome1 GeneDB CDS 5375612 5377699 . + . mRNA SPAC4D7.13 ; colour "2" ;
chromosome1 GeneDB misc_feature 5377940 5378001 . + . misc_feature unknown_4466 ; note "nominal overlap with cosmid SPAC3G6, EM:Z99167 S.pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 5378427 5382650 . + . mRNA SPAC3G6.01 ; systematic_id "SPAC3G6.01" ; colour "2" ; gene "hrp3 ||| SPAC3G6.01" ; Alias "hrp3" ; db_xref "SPD:30/30G04" ; GO "GO:0031934; mating-type region heterochromatin
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0003677; DNA binding
GO:0008094; DNA-dependent ATPase activity
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0000070; mitotic sister chromatid segregation
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0005515; protein binding
GO:0000790; nuclear chromatin
GO:0060303; regulation of nucleosome density" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=helicase C-terminal domain; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=chromodomain protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12127990; date=19700101 ||| term=orthologous to S. cerevisiae YER164W; date=19700101 ||| term=misc, targets correlated with Clr3 and Sir2 targets; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=misc, overlapping genome wide occupancy in coding regions Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=misc, overlapping genome wide occupancy in promoters Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Helicase- Related protein from S. Pombe; cv=name_description; date=20100126 ||| term=human CHD1 and CHD2 ortholog; date=20100908" ; primary_name "hrp3" ; product "ATP-dependent DNA helicase Hrp3" ;
chromosome1 GeneDB CDS 5378427 5378618 . + . mRNA SPAC3G6.01 ; colour "2" ;
chromosome1 GeneDB CDS 5378676 5382650 . + . mRNA SPAC3G6.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 5378619 5378624 . + . misc_feature unknown_4467 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5378663 5378675 . + . misc_feature unknown_4468 ; colour "6" ; note "ctaatcattatag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5382651 5382811 . + . mRNA SPAC3G6.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G6.01" ; systematic_id "SPAC3G6.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5383082 5383092 . + . mRNA SPAC3G6.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G6.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5383093 5383454 . + . mRNA SPAC3G6.02 ; systematic_id "SPAC3G6.02" ; colour "2" ; gene "dss1 ||| SPAC3G6.02" ; Alias "dss1" ; db_xref "SPD:02/02D11" ; GO "GO:0005737; cytoplasm
GO:0005643; nuclear pore
GO:0005634; nucleus
GO:0008541; proteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0031144; proteasome localization
GO:0006974; response to DNA damage stimulus
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10373512; date=19700101 ||| term=orthologous to S. cerevisiae YDR363W-A; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, developmental disorders; date=20091124 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:10373512; date=20100727" ; primary_name "dss1" ; product "mRNA export protein Dss1" ;
chromosome1 GeneDB CDS 5383093 5383123 . + . mRNA SPAC3G6.02 ; colour "2" ;
chromosome1 GeneDB CDS 5383230 5383271 . + . mRNA SPAC3G6.02 ; colour "2" ;
chromosome1 GeneDB CDS 5383312 5383454 . + . mRNA SPAC3G6.02 ; colour "2" ;
chromosome1 GeneDB misc_feature 5383124 5383129 . + . misc_feature unknown_4469 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5383214 5383229 . + . misc_feature unknown_4470 ; colour "6" ; note "ctaacataatgcttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5383272 5383277 . + . misc_feature unknown_4471 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5383298 5383311 . + . misc_feature unknown_4472 ; colour "6" ; note "ttaacatcaaaaag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5383455 5383744 . + . mRNA SPAC3G6.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G6.02" ; systematic_id "SPAC3G6.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5383803 5383954 . - . mRNA SPAC3G6.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G6.03c" ; systematic_id "SPAC3G6.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5383955 5385138 . - . mRNA SPAC3G6.03c ; db_xref "SPD:18/18G08" ; systematic_id "SPAC3G6.03c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human c2orf76 ortholog; date=20100718" ; colour "10" ; gene "SPAC3G6.03c" ; product "Maf-like protein" ;
chromosome1 GeneDB CDS 5383955 5384083 . - . mRNA SPAC3G6.03c ; colour "10" ;
chromosome1 GeneDB CDS 5384207 5384530 . - . mRNA SPAC3G6.03c ; colour "10" ;
chromosome1 GeneDB CDS 5384630 5384758 . - . mRNA SPAC3G6.03c ; colour "10" ;
chromosome1 GeneDB CDS 5385010 5385138 . - . mRNA SPAC3G6.03c ; colour "10" ;
chromosome1 GeneDB misc_feature 5384084 5384097 . - . misc_feature unknown_4473 ; colour "6" ; note "ctgactaagtttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5384201 5384206 . - . misc_feature unknown_4474 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5384531 5384552 . - . misc_feature unknown_4475 ; colour "6" ; note "ttaacgcattttttctacttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5384624 5384629 . - . misc_feature unknown_4476 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5384759 5384778 . - . misc_feature unknown_4477 ; colour "6" ; note "ctaatgttgatttaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5385004 5385009 . - . misc_feature unknown_4478 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5385139 5385561 . - . mRNA SPAC3G6.03c ; ID "SPAC3G6.03c" ; systematic_id "SPAC3G6.03c" ; gene "SPAC3G6.03c" ; note "mRNA from AU008941" ;
chromosome1 GeneDB 5'-UTR 5385779 5385882 . + . mRNA SPAC3G6.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G6.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5385883 5386992 . + . mRNA SPAC3G6.04 ; systematic_id "SPAC3G6.04" ; colour "2" ; gene "rnp24 ||| SPAC3G6.04" ; Alias "rnp24" ; db_xref "SPD:43/43G09" ; GO "GO:0003723; RNA binding
GO:0005730; nucleolus
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8598051; date=19700101 ||| term=orthologous to S. cerevisiae YNL175C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rnp24" ; product "RNA-binding protein Rnp24" ;
chromosome1 GeneDB CDS 5385883 5386992 . + . mRNA SPAC3G6.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5386993 5387043 . + . mRNA SPAC3G6.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G6.04" ; systematic_id "SPAC3G6.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB snoRNA 5387559 5387641 . + . snoRNA SPSNORNA.19 ; Alias "snoR69" ; systematic_id "SPSNORNA.19" ; controlled_curation "term=orthologous to S. cerevisiae Yeast snR71 and snR69; date=20070104" ; primary_name "snoR69" ; gene "snoR69 ||| SPSNORNA.19" ; product "small nucleolar RNA" ;
chromosome1 GeneDB misc_RNA 5387957 5388056 . + . misc_RNA SPNCRNA.265 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.265" ; synonym "SPNG1030" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5388367 5388585 . + . mRNA SPAC3G6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5388586 5389395 . + . mRNA SPAC3G6.05 ; db_xref "SPD:43/43C11" ; systematic_id "SPAC3G6.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR251W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006067; ethanol metabolism
GO:0005743; mitochondrial inner membrane
GO:0000002; mitochondrial genome maintenance" ; gene "SPAC3G6.05" ; product "Mvp17/PMP22 family protein 1 (predicted)" ;
chromosome1 GeneDB CDS 5388586 5388963 . + . mRNA SPAC3G6.05 ; colour "7" ;
chromosome1 GeneDB CDS 5389020 5389091 . + . mRNA SPAC3G6.05 ; colour "7" ;
chromosome1 GeneDB CDS 5389156 5389253 . + . mRNA SPAC3G6.05 ; colour "7" ;
chromosome1 GeneDB CDS 5389323 5389395 . + . mRNA SPAC3G6.05 ; colour "7" ;
chromosome1 GeneDB misc_feature 5388964 5388969 . + . misc_feature unknown_4479 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5389003 5389019 . + . misc_feature unknown_4480 ; colour "6" ; note "ctaacactaaaccgcag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5389092 5389097 . + . misc_feature unknown_4481 ; colour "6" ; note "gtacac, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5389143 5389155 . + . misc_feature unknown_4482 ; colour "6" ; note "ctaacatttaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5389254 5389259 . + . misc_feature unknown_4483 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5389309 5389322 . + . misc_feature unknown_4484 ; colour "6" ; note "ctaatttcaattag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5389396 5389571 . + . mRNA SPAC3G6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G6.05" ; systematic_id "SPAC3G6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5389631 5389668 . - . mRNA SPAC3G6.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G6.06c" ; systematic_id "SPAC3G6.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5389669 5391261 . - . mRNA SPAC3G6.06c ; systematic_id "SPAC3G6.06c" ; colour "2" ; db_xref "SPD:25/25F04" ; Alias "rad2" ; synonym "fen1" ; GO "GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0017108; 5'-flap endonuclease activity
GO:0005515; protein binding
GO:0045145; single-stranded DNA specific 5'-3' exodeoxyribonuclease activity
GO:0043137; DNA replication, removal of RNA primer
GO:0000731; DNA synthesis during DNA repair
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=XP-G family; date=19700101 ||| term=phenotype, sensitive to MMS; qualifier=hyper|deletion; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YKL113C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20071114 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rad2" ; product "FEN-1 endonuclease Rad2" ;
chromosome1 GeneDB CDS 5389669 5390707 . - . mRNA SPAC3G6.06c ; colour "2" ;
chromosome1 GeneDB CDS 5391089 5391179 . - . mRNA SPAC3G6.06c ; colour "2" ;
chromosome1 GeneDB CDS 5391249 5391261 . - . mRNA SPAC3G6.06c ; colour "2" ;
chromosome1 GeneDB misc_feature 5390708 5390726 . - . misc_feature unknown_4485 ; colour "6" ; note "ctaatttcgtatattacag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5391083 5391088 . - . misc_feature unknown_4486 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5391180 5391193 . - . misc_feature unknown_4487 ; colour "6" ; note "ctaatctgggttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5391243 5391248 . - . misc_feature unknown_4488 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5391260 5391386 . - . mRNA SPAC3G6.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G6.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5392273 5392650 . + . mRNA SPAC3G6.07 ; db_xref "SPD:02/02G04" ; systematic_id "SPAC3G6.07" ; colour "6" ; gene "SPAC3G6.07" ; product "dubious" ;
chromosome1 GeneDB CDS 5392273 5392650 . + . mRNA SPAC3G6.07 ; colour "6" ;
chromosome1 GeneDB 5'-UTR 5393586 5393687 . + . mRNA SPAC3G6.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G6.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5393688 5394236 . + . mRNA SPAC3G6.08 ; systematic_id "SPAC3G6.08" ; colour "7" ; gene "erv1 ||| SPAC3G6.08" ; Alias "erv1" ; db_xref "SPD:05/05F04" ; GO "GO:0016972; thiol oxidase activity
GO:0006879; iron ion homeostasis
GO:0007005; mitochondrion organization and biogenesis
GO:0005758; mitochondrial intermembrane space
GO:0045041; protein import into mitochondrial intermembrane space
GO:0006467; protein thiol-disulphide exchange" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR029W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "erv1" ; product "mitochondrial sulfhydryl oxidase (predicted)" ;
chromosome1 GeneDB CDS 5393688 5394236 . + . mRNA SPAC3G6.08 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5394237 5394307 . + . mRNA SPAC3G6.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G6.08" ; systematic_id "SPAC3G6.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5394528 5394645 . - . mRNA SPAC3G6.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G6.09c" ; systematic_id "SPAC3G6.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5394646 5397195 . - . mRNA SPAC3G6.09c ; systematic_id "SPAC3G6.09c" ; colour "7" ; gene "tps2 ||| SPAC3G6.09c" ; Alias "tps2" ; db_xref "SPD:29/29D02" ; GO "GO:0004805; trehalose-phosphatase activity
GO:0005946; alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)
GO:0005992; trehalose biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR074W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "tps2" ; product "trehalose-phosphate synthase Tps2 (predicted)" ; EC_number "3.1.3.12" ;
chromosome1 GeneDB CDS 5394646 5397195 . - . mRNA SPAC3G6.09c ; colour "7" ;
chromosome1 GeneDB CDS_parts 5397600 5398079 . - . mRNA SPAC3G6.10c ; systematic_id "SPAC3G6.10c" ; colour "7" ; gene "SPAC3G6.10c ||| vps51" ; Alias "vps51" ; db_xref "SPD:42/42B09" ; GO "GO:0000938; GARP complex
GO:0006623; protein targeting to vacuole
GO:0042147; retrograde transport, endosome to Golgi" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR020W; date=20070814 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human c11orf2 ortholog; date=20100125" ; primary_name "vps51" ; product "GARP complex subunit Vps51 (predicted)" ;
chromosome1 GeneDB CDS 5397600 5398079 . - . mRNA SPAC3G6.10c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5398078 5398153 . - . mRNA SPAC3G6.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G6.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5398266 5398698 . + . misc_RNA SPNCRNA.266 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.266" ; synonym "SPNG1033" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5398819 5399113 . + . mRNA SPAC3G6.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC3G6.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5399114 5401772 . + . mRNA SPAC3G6.11 ; systematic_id "SPAC3G6.11" ; colour "7" ; db_xref "SPD:38/38G11" ; Alias "chl1" ; GO "GO:0005634; nucleus
GO:0007064; mitotic sister chromatid cohesion
GO:0004003; ATP-dependent DNA helicase activity
GO:0006342; chromatin silencing
GO:0045910; negative regulation of DNA recombination
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YPL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human DDX11 and DDX12 ortholog; date=20100331" ; primary_name "chl1" ; product "ATP-dependent DNA helicase Chl1 (predicted)" ;
chromosome1 GeneDB CDS 5399114 5399752 . + . mRNA SPAC3G6.11 ; colour "7" ;
chromosome1 GeneDB CDS 5399818 5400010 . + . mRNA SPAC3G6.11 ; colour "7" ;
chromosome1 GeneDB CDS 5400070 5401772 . + . mRNA SPAC3G6.11 ; colour "7" ;
chromosome1 GeneDB misc_feature 5399753 5399758 . + . misc_feature unknown_4489 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5399803 5399817 . + . misc_feature unknown_4490 ; colour "6" ; note "ctaacctactgctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5400011 5400016 . + . misc_feature unknown_4491 ; colour "6" ; note "gtactt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5400052 5400069 . + . misc_feature unknown_4492 ; colour "6" ; note "ttaacttttacattttag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5401773 5401897 . + . mRNA SPAC3G6.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G6.11" ; systematic_id "SPAC3G6.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5401951 5402103 . - . mRNA SPAC3G6.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC3G6.13c" ; systematic_id "SPAC3G6.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5402104 5402233 . - . mRNA SPAC3G6.13c ; systematic_id "SPAC3G6.13c" ; colour "2" ; gene "rpl4101 ||| rpl41-1 ||| SPAC3G6.13c" ; Alias "rpl4101" ; db_xref "SPD:01/01A03" ; synonym "rpl41-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL184C and YDL133C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl4101" ; product "60S ribosomal protein L41" ;
chromosome1 GeneDB CDS 5402104 5402110 . - . mRNA SPAC3G6.13c ; colour "2" ;
chromosome1 GeneDB CDS 5402163 5402233 . - . mRNA SPAC3G6.13c ; colour "2" ;
chromosome1 GeneDB intron 5402111 5402162 . - . intron SPAC3G6.13c ; Alias "rpl4101" ; db_xref "SPD:01/01A03" ; systematic_id "SPAC3G6.13c" ; primary_name "rpl4101" ; gene "rpl4101 ||| rpl41-1 ||| SPAC3G6.13c" ; note "confirmed intron" ;
chromosome1 GeneDB misc_RNA 5402653 5403044 . + . misc_RNA SPNCRNA.267 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.267" ; synonym "SPNG1034" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5403214 5403240 . + . mRNA SPAC29B12.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29B12.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5403241 5408055 . + . mRNA SPAC29B12.01 ; systematic_id "SPAC29B12.01" ; colour "2" ; gene "ino80 ||| SPAC3G6.12 ||| SPAC29B12.01" ; Alias "ino80" ; db_xref "SPD:31/31A05" ; synonym "SPAC3G6.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YGL150C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling
GO:0006281; DNA repair
GO:0043140; ATP-dependent 3' to 5' DNA helicase activity" ; primary_name "ino80" ; product "SNF2 family helicase Ino80" ;
chromosome1 GeneDB CDS 5403241 5408055 . + . mRNA SPAC29B12.01 ; colour "2" ;
chromosome1 GeneDB misc_feature 5406342 5406430 . + . misc_feature unknown_4493 ; note "nominal overlap with cosmid SPAC3G6 and cosmid SPAC29B12" ;
chromosome1 GeneDB 3'-UTR 5408056 5408167 . + . mRNA SPAC29B12.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29B12.01" ; systematic_id "SPAC29B12.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5408386 5408417 . - . mRNA SPAC29B12.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29B12.02c" ; systematic_id "SPAC29B12.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5408418 5410814 . - . mRNA SPAC29B12.02c ; systematic_id "SPAC29B12.02c" ; colour "2" ; gene "set2 ||| SPAC29B12.02c" ; Alias "set2" ; db_xref "SPD:28/28F02" ; synonym "kmt3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YJL168C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human SETD2 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; GO "GO:0046975; histone lysine N-methyltransferase activity (H3-K36 specific)
GO:0016571; histone methylation
GO:0000790; nuclear chromatin
; DNA-directed RNA polymerase II, core complex
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "set2" ; product "histone lysine methyltransferase Set2" ;
chromosome1 GeneDB CDS 5408418 5410814 . - . mRNA SPAC29B12.02c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5410813 5411023 . - . mRNA SPAC29B12.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29B12.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5411152 5411543 . + . misc_RNA SPNCRNA.268 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.268" ; synonym "SPNG1035" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5412457 5412488 . + . mRNA SPAC29B12.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29B12.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5412489 5412863 . + . mRNA SPAC29B12.03 ; systematic_id "SPAC29B12.03" ; colour "2" ; gene "spd1 ||| SPAC29B12.03" ; Alias "spd1" ; db_xref "SPD:02/02F08" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004857; enzyme inhibitor activity
GO:0004857; enzyme inhibitor activity
GO:0043495; protein anchor
GO:0043495; protein anchor
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0045749; negative regulation of S phase of mitotic cell cycle
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, degradation is promoted by two separate CSN-dependent mechanisms; db_xref=PMID:12695334; date=19700101 ||| term=modification, ubiquitinated; cv=pt_mod; date=19700101 ||| term=orthologous to S. cerevisiae YLR437C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "spd1" ; product "ribonucleotide reductase (RNR) inhibitor" ;
chromosome1 GeneDB CDS 5412489 5412863 . + . mRNA SPAC29B12.03 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5412864 5413219 . + . mRNA SPAC29B12.03 ; Alias "spd1" ; ID "SPAC29B12.03" ; db_xref "SPD:02/02F08" ; systematic_id "SPAC29B12.03" ; primary_name "spd1" ; gene "spd1 ||| SPAC29B12.03" ; note "mRNA from AU008577" ;
chromosome1 GeneDB misc_RNA 5413747 5414846 . + . misc_RNA SPNCRNA.269 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.269" ; synonym "SPNG1039" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5414984 5415185 . + . mRNA SPAC29B12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29B12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5415186 5416076 . + . mRNA SPAC29B12.04 ; systematic_id "SPAC29B12.04" ; colour "2" ; gene "snz1 ||| SPAC29B12.04" ; private "vitamin biosynthetic process hardwired for Boolean" ; Alias "snz1" ; db_xref "SPD:12/12B02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR096W and YFL059W and YNL333W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0008615; pyridoxine biosynthesis
GO:0008615; pyridoxine biosynthesis" ; primary_name "snz1" ; product "pyridoxine biosynthesis protein" ;
chromosome1 GeneDB CDS 5415186 5416076 . + . mRNA SPAC29B12.04 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5416077 5416193 . + . mRNA SPAC29B12.04 ; Alias "snz1" ; ID "SPAC29B12.04" ; db_xref "SPD:12/12B02" ; systematic_id "SPAC29B12.04" ; primary_name "snz1" ; gene "snz1 ||| SPAC29B12.04" ; note "mRNA from AU012044" ;
chromosome1 GeneDB CDS_parts 5416351 5417280 . - . mRNA SPAC29B12.05c ; db_xref "SPD:13/13A06" ; systematic_id "SPAC29B12.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0005739; mitochondrion
GO:0032543; mitochondrial translation" ; gene "SPAC29B12.05c" ; product "mitochondrial S-adenosylmethionine-dependent methyltransferase (predicted)" ;
chromosome1 GeneDB CDS 5416351 5417280 . - . mRNA SPAC29B12.05c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5417460 5417959 . - . mRNA SPAC29B12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29B12.06c" ; systematic_id "SPAC29B12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5417960 5418811 . - . mRNA SPAC29B12.06c ; systematic_id "SPAC29B12.06c" ; colour "2" ; gene "rcd1 ||| SPAC29B12.06c" ; Alias "rcd1" ; db_xref "SPD:11/11B12" ; GO "GO:0030014; CCR4-NOT complex
GO:0003723; RNA binding
GO:0006354; RNA elongation
GO:0010515; negative regulation of induction of conjugation upon nitrogen starvation
GO:0006402; mRNA catabolism
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0000122; negative regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL288W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rcd1" ; product "RNA-binding protein, CCR4-NOT complex subunit Rcd1" ;
chromosome1 GeneDB CDS 5417960 5418811 . - . mRNA SPAC29B12.06c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5418812 5418973 . - . mRNA SPAC29B12.06c ; Alias "rcd1" ; ID "SPAC29B12.06c" ; systematic_id "SPAC29B12.06c" ; primary_name "rcd1" ; gene "rcd1 ||| SPAC29B12.06c" ; note "mRNA from AU010091" ;
chromosome1 GeneDB 5'-UTR 5419772 5419996 . + . mRNA SPAC29B12.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29B12.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5419997 5425984 . + . mRNA SPAC29B12.07 ; systematic_id "SPAC29B12.07" ; colour "7" ; gene "sec16 ||| SPAC29B12.07" ; Alias "sec16" ; db_xref "SPD:34/34C01" ; GO "GO:0030127; COPII vesicle coat
GO:0005789; endoplasmic reticulum membrane
GO:0016192; vesicle-mediated transport
GO:0006914; autophagy
GO:0006901; vesicle coating" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec16" ; product "multidomain vesicle coat component Sec16 (predicted)" ;
chromosome1 GeneDB CDS 5419997 5425984 . + . mRNA SPAC29B12.07 ; colour "7" ;
chromosome1 GeneDB misc_feature 5421988 5421994 . + . misc_feature unknown_4494 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5422035 5422065 . + . misc_feature unknown_4495 ; colour "6" ; note "ctaactctttcaattcctatccagcgtctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5425985 5426201 . + . mRNA SPAC29B12.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29B12.07" ; systematic_id "SPAC29B12.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5426943 5428044 . + . misc_RNA SPNCRNA.270 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.270" ; synonym "SPNG1041" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5428237 5428785 . + . mRNA SPAC29B12.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29B12.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5429038 5431072 . + . mRNA SPAC29B12.08 ; db_xref "SPD:34/34F07" ; systematic_id "SPAC29B12.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, gene structure updated; cv=warning; date=20091214" ; colour "8" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 5429038 5429045 . + . mRNA SPAC29B12.08 ; colour "8" ;
chromosome1 GeneDB CDS 5429119 5431072 . + . mRNA SPAC29B12.08 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 5431073 5431485 . + . mRNA SPAC29B12.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29B12.08" ; systematic_id "SPAC29B12.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5431599 5431857 . - . mRNA SPAC29B12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29B12.10c" ; systematic_id "SPAC29B12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5431858 5434413 . - . mRNA SPAC29B12.10c ; systematic_id "SPAC29B12.10c" ; colour "2" ; gene "SPAC29B12.10c ||| pgt1" ; Alias "pgt1" ; db_xref "SPD:46/46H11" ; GO "GO:0005887; integral to plasma membrane
GO:0034634; glutathione transmembrane transporter activity
GO:0033554; cellular response to stress
GO:0034775; glutathione transmembrane transport
GO:0034775; glutathione transmembrane transport
GO:0071276; cellular response to cadmium ion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL212C and YPR194C; date=19700101 ||| term=gene expression, expression induced by sulfur limitation; db_xref=PMID:18662319; cv=gene_ex; date=20080731 ||| term=catalytic activity, K(m)=63 microM; db_xref=PMID:18662319; cv=cat_act; date=20100123 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "pgt1" ; product "glutathione transporter Pgt1" ;
chromosome1 GeneDB CDS 5431858 5434413 . - . mRNA SPAC29B12.10c ; colour "2" ;
chromosome1 GeneDB 5'-UTR 5434412 5434838 . - . mRNA SPAC29B12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29B12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5436052 5436677 . - . mRNA SPAC29B12.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29B12.11c" ; systematic_id "SPAC29B12.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5436678 5437202 . - . mRNA SPAC29B12.11c ; db_xref "SPD:05/05C04" ; systematic_id "SPAC29B12.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GRAM domain; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC29B12.11c" ; product "human WW domain binding protein-2 ortholog" ;
chromosome1 GeneDB CDS 5436678 5437202 . - . mRNA SPAC29B12.11c ; colour "10" ;
chromosome1 GeneDB tRNA 5437747 5437828 . + . tRNA SPATRNASER.04 ; systematic_id "SPATRNASER.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033447; AGA codon-amino acid adaptor activity" ; product "tRNA Serine" ; note "tRNA Ser anticodon AGA, Cove score 80.47" ;
chromosome1 GeneDB CDS_parts 5438212 5438553 . + . mRNA SPAC29B12.12 ; db_xref "SPD:02/02A11" ; systematic_id "SPAC29B12.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CHY; date=19700101 ||| term=orthologous to S. cerevisiae YKL084W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0045041; protein import into mitochondrial intermembrane space" ; gene "SPAC29B12.12" ; product "helper of TIM (predicted)" ;
chromosome1 GeneDB CDS 5438212 5438553 . + . mRNA SPAC29B12.12 ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5438961 5439048 . + . mRNA SPAC29B12.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29B12.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5439049 5439462 . + . mRNA SPAC29B12.13 ; db_xref "SPD:03/03C04" ; systematic_id "SPAC29B12.13" ; GO "GO:0051907; S-(hydroxymethyl)glutathione synthase activity
GO:0046294; formaldehyde catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "7" ; gene "SPAC29B12.13" ; product "S-(hydroxymethyl)glutathione synthase activity (predicted)" ;
chromosome1 GeneDB CDS 5439049 5439462 . + . mRNA SPAC29B12.13 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5439793 5439848 . - . mRNA SPAC29B12.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC29B12.14c" ; systematic_id "SPAC29B12.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5439849 5441594 . - . mRNA SPAC29B12.14c ; db_xref "SPD:45/45G04" ; systematic_id "SPAC29B12.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR021W and YIR028W and YBL042C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0015505; uracil permease activity
GO:0015857; uracil transport
GO:0005886; plasma membrane" ; gene "SPAC29B12.14c" ; product "purine transporter (predicted)" ;
chromosome1 GeneDB CDS 5439849 5441594 . - . mRNA SPAC29B12.14c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5441593 5441990 . - . mRNA SPAC29B12.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC29B12.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5441748 5442341 . - . misc_RNA SPNCRNA.28 ; Alias "prl28" ; db_xref "PMID:12597277 ||| EMBL:AB084839" ; systematic_id "SPNCRNA.28" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl28" ; gene "prl28 ||| SPNCRNA.28" ; product "non-coding RNA, poly(A) bearing (predicted)" ;
chromosome1 GeneDB misc_RNA 5442521 5442742 . + . misc_RNA SPNCRNA.271 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.271" ; synonym "SPNG1044" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_RNA 5442999 5443180 . + . misc_RNA SPNCRNA.272 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.272" ; synonym "SPNG1045" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_feature 5443976 5444024 . + . misc_feature unknown_4496 ; note "nominal overlap with cosmid SPAC29B12 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_RNA 5444019 5444123 . + . misc_RNA SPNCRNA.273 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.273" ; synonym "SPNG1046" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 5445350 5447053 . + . mRNA SPAC1039.01 ; db_xref "SPD:45/45F01" ; systematic_id "SPAC1039.01" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; gene "SPAC1039.01" ; product "amino acid permease (predicted)" ;
chromosome1 GeneDB CDS 5445350 5447053 . + . mRNA SPAC1039.01 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5447054 5447435 . + . mRNA SPAC1039.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1039.01" ; systematic_id "SPAC1039.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5449717 5451522 . + . mRNA SPAC1039.02 ; db_xref "SPD:36/36E06" ; systematic_id "SPAC1039.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR202W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC1039.02" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome1 GeneDB CDS 5449717 5451522 . + . mRNA SPAC1039.02 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 5451523 5451560 . + . mRNA SPAC1039.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1039.02" ; systematic_id "SPAC1039.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5452217 5452728 . + . mRNA SPAC1039.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1039.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5452729 5453754 . + . mRNA SPAC1039.03 ; db_xref "SPD:15/15D09" ; systematic_id "SPAC1039.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC1039.03" ; product "esterase/lipase (predicted)" ;
chromosome1 GeneDB CDS 5452729 5453754 . + . mRNA SPAC1039.03 ; colour "10" ;
chromosome1 GeneDB 3'-UTR 5453755 5453812 . + . mRNA SPAC1039.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1039.03" ; systematic_id "SPAC1039.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5454229 5454498 . - . misc_RNA SPNCRNA.21 ; Alias "prl21" ; db_xref "PMID:12597277 ||| EMBL:AB084833" ; systematic_id "SPNCRNA.21" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl21" ; gene "prl21 ||| SPNCRNA.21" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB 5'-UTR 5454643 5454900 . + . mRNA SPAC1039.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1039.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5454901 5456424 . + . mRNA SPAC1039.04 ; db_xref "SPD:24/24G02" ; systematic_id "SPAC1039.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR260W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0015663; nicotinamide mononucleotide transmembrane transporter activity
GO:0035353; nicotinamide mononucleotide transmembrane transport" ; gene "SPAC1039.04" ; product "nicotinic acid plasma membrane transporter (predicted)" ;
chromosome1 GeneDB CDS 5454901 5456424 . + . mRNA SPAC1039.04 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5456425 5456619 . + . mRNA SPAC1039.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1039.04" ; systematic_id "SPAC1039.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5456727 5456744 . - . mRNA SPAC1039.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1039.05c" ; systematic_id "SPAC1039.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5456745 5459395 . - . mRNA SPAC1039.05c ; systematic_id "SPAC1039.05c" ; colour "2" ; gene "SPAC1039.05c ||| klf1" ; db_xref "SPD:38/38G08" ; Alias "klf1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YPR022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "klf1" ; product "zinc finger protein Klf1" ;
chromosome1 GeneDB CDS 5456745 5456788 . - . mRNA SPAC1039.05c ; colour "2" ;
chromosome1 GeneDB CDS 5456840 5457472 . - . mRNA SPAC1039.05c ; colour "2" ;
chromosome1 GeneDB CDS 5457528 5457826 . - . mRNA SPAC1039.05c ; colour "2" ;
chromosome1 GeneDB CDS 5457872 5457993 . - . mRNA SPAC1039.05c ; colour "2" ;
chromosome1 GeneDB CDS 5458047 5459173 . - . mRNA SPAC1039.05c ; colour "2" ;
chromosome1 GeneDB CDS 5459275 5459395 . - . mRNA SPAC1039.05c ; colour "2" ;
chromosome1 GeneDB misc_feature 5456789 5456801 . - . misc_feature unknown_4497 ; colour "6" ; note "ctaacagttttag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5456834 5456839 . - . misc_feature unknown_4498 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5457473 5457488 . - . misc_feature unknown_4499 ; colour "6" ; note "ctaactggttttaaag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5457522 5457527 . - . misc_feature unknown_4500 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5457827 5457839 . - . misc_feature unknown_4501 ; colour "6" ; note "ttaacactattag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5457866 5457871 . - . misc_feature unknown_4502 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5457994 5458003 . - . misc_feature unknown_4503 ; colour "6" ; note "ctaattctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5458041 5458046 . - . misc_feature unknown_4504 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5459174 5459183 . - . misc_feature unknown_4505 ; colour "6" ; note "ctaattatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5459269 5459274 . - . misc_feature unknown_4506 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB 5'-UTR 5459394 5459483 . - . mRNA SPAC1039.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1039.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5459453 5459867 . + . misc_RNA SPNCRNA.274 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.274" ; synonym "SPNG1047" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5460195 5460566 . + . mRNA SPAC1039.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC1039.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5460567 5461814 . + . mRNA SPAC1039.06 ; systematic_id "SPAC1039.06" ; colour "7" ; gene "SPAC1039.06" ; note "S. cerevisiae YGL196W is either pseudo, or has 3 frameshifts" ; db_xref "SPD:19/19H08" ; GO "GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0008784; alanine racemase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL196W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "alanine racemase (predicted)" ;
chromosome1 GeneDB CDS 5460567 5461814 . + . mRNA SPAC1039.06 ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5461815 5461900 . + . mRNA SPAC1039.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1039.06" ; systematic_id "SPAC1039.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5462177 5462442 . - . mRNA SPAC1039.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC1039.07c" ; systematic_id "SPAC1039.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5462443 5463789 . - . mRNA SPAC1039.07c ; db_xref "SPD:20/20G12" ; systematic_id "SPAC1039.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "10" ; gene "SPAC1039.07c" ; product "aminotransferase class-III, unknown specificity" ;
chromosome1 GeneDB CDS 5462443 5463789 . - . mRNA SPAC1039.07c ; colour "10" ;
chromosome1 GeneDB CDS_parts 5464248 5465060 . + . mRNA SPAC1039.08 ; db_xref "KEGG:MAP00272; ||| KEGG:MAP00920; ||| SPD:22/22A09" ; systematic_id "SPAC1039.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0006535; cysteine biosynthesis from serine
GO:0009001; serine O-acetyltransferase activity" ; gene "SPAC1039.08" ; product "serine acetyltransferase (predicted)" ; EC_number "2.3.1.30" ;
chromosome1 GeneDB CDS 5464248 5465060 . + . mRNA SPAC1039.08 ; colour "7" ;
chromosome1 GeneDB misc_RNA 5465093 5465740 . + . misc_RNA SPNCRNA.275 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.275" ; synonym "SPNG1049" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| longest ORF with methionine is 68 amino acids" ;
chromosome1 GeneDB CDS_parts 5466778 5468520 . + . mRNA SPAC1039.09 ; systematic_id "SPAC1039.09" ; colour "2" ; gene "isp5 ||| SPAC1039.09" ; Alias "isp5" ; db_xref "SPD:35/35H09" ; GO "GO:0000747; conjugation with cellular fusion
GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "isp5" ; product "amino acid permease Isp5" ;
chromosome1 GeneDB CDS 5466778 5468520 . + . mRNA SPAC1039.09 ; colour "2" ;
chromosome1 GeneDB 3'-UTR 5468521 5468649 . + . mRNA SPAC1039.09 ; Alias "isp5" ; ID "SPAC1039.09" ; db_xref "SPD:35/35H09" ; systematic_id "SPAC1039.09" ; primary_name "isp5" ; gene "isp5 ||| SPAC1039.09" ; note "mRNA from SPORF3" ;
chromosome1 GeneDB misc_feature 5470660 5471868 . + . misc_feature unknown_4507 ; note "nominal overlap with cosmid SPAC922 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 5470660 5471868 . - . misc_feature unknown_4508 ; note "nominal overlap with cosmid c1039 S. pombe chromosome 1" ;
chromosome1 GeneDB CDS_parts 5470914 5471350 . + . mRNA SPAC1039.10 ; systematic_id "SPAC1039.10" ; colour "10" ; gene "mmf2 ||| hpm1 ||| SPAC1039.10 ||| SPAC922.01" ; Alias "mmf2" ; db_xref "SPD:03/03G02" ; synonym "hpm1 ||| SPAC922.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER057C and YIL051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human HRSP12 ortholog; date=20100718" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0009097; isoleucine biosynthetic process" ; primary_name "mmf2" ; product "homologous Pmf1 factor 1, implicated in isoleucine biosynthesis (predicted)" ;
chromosome1 GeneDB CDS 5470914 5471227 . + . mRNA SPAC1039.10 ; colour "10" ;
chromosome1 GeneDB CDS 5471284 5471350 . + . mRNA SPAC1039.10 ; colour "10" ;
chromosome1 GeneDB misc_feature 5471228 5471233 . + . misc_feature unknown_4509 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5471272 5471283 . + . misc_feature unknown_4510 ; colour "6" ; note "ctaattatctag, splice branch and acceptor" ;
chromosome1 GeneDB CDS_parts 5471561 5474548 . - . mRNA SPAC1039.11c ; systematic_id "SPAC1039.11c" ; colour "7" ; gene "SPAC922.02c ||| SPAC1039.11c" ; Alias "SPAC922.02c" ; db_xref "SPD:29/29G11" ; synonym "SPAC922.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe agl1 and SPAC30D11.01c; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20100104" ; GO "GO:0004558; alpha-glucosidase activity
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "SPAC922.02c" ; product "alpha-glucosidase (predicted)" ; EC_number "3.2.1.20" ;
chromosome1 GeneDB CDS 5471561 5474548 . - . mRNA SPAC1039.11c ; colour "7" ;
chromosome1 GeneDB misc_RNA 5474747 5475378 . - . misc_RNA SPNCRNA.276 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.276" ; synonym "SPNG1050" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "could be 5' UTR of SPAC1039.11c" ;
chromosome1 GeneDB misc_RNA 5475433 5475848 . + . misc_RNA SPNCRNA.30 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.30" ; synonym "SPNGAF530" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB 5'-UTR 5476698 5476876 . + . mRNA SPAC922.03 ; ID "SPAC922.03" ; systematic_id "SPAC922.03" ; gene "SPAC922.03" ; note "mRNA from AU011195" ;
chromosome1 GeneDB CDS_parts 5476877 5477957 . + . mRNA SPAC922.03 ; db_xref "SPD:16/16G11" ; systematic_id "SPAC922.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0008660; 1-aminocyclopropane-1-carboxylate deaminase activity
GO:0019541; propionote metabolic process" ; gene "SPAC922.03" ; product "1-aminocyclopropane-1-carboxylate deaminase (predicted)" ;
chromosome1 GeneDB CDS 5476877 5477883 . + . mRNA SPAC922.03 ; colour "7" ;
chromosome1 GeneDB CDS 5477948 5477957 . + . mRNA SPAC922.03 ; colour "7" ;
chromosome1 GeneDB misc_feature 5477884 5477889 . + . misc_feature unknown_4511 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome1 GeneDB misc_feature 5477925 5477947 . + . misc_feature unknown_4512 ; colour "6" ; note "ctaactctttgtcacacatctag, splice branch and acceptor" ;
chromosome1 GeneDB 3'-UTR 5477958 5478012 . + . mRNA SPAC922.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC922.03" ; systematic_id "SPAC922.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB misc_RNA 5478402 5479098 . + . misc_RNA SPNCRNA.277 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.277" ; synonym "SPNG1054" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5479853 5479977 . + . mRNA SPAC922.04 ; ID "SPAC922.04" ; systematic_id "SPAC922.04" ; gene "SPAC922.04" ; note "mRNA from AU006605" ;
chromosome1 GeneDB CDS_parts 5479978 5480331 . + . mRNA SPAC922.04 ; db_xref "SPD:02/02C10" ; systematic_id "SPAC922.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC922.04" ; product "sequence orphan" ;
chromosome1 GeneDB CDS 5479978 5480331 . + . mRNA SPAC922.04 ; colour "8" ;
chromosome1 GeneDB 3'-UTR 5480332 5480485 . + . mRNA SPAC922.04 ; ID "SPAC922.04" ; db_xref "SPD:02/02C10" ; systematic_id "SPAC922.04" ; gene "SPAC922.04" ; note "mRNA from AU008744" ;
chromosome1 GeneDB misc_RNA 5481585 5482068 . + . misc_RNA SPNCRNA.278 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.278" ; synonym "SPNG1057" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 3'-UTR 5482969 5483048 . - . mRNA SPAC922.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC922.05c" ; systematic_id "SPAC922.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5483049 5484563 . - . mRNA SPAC922.05c ; db_xref "SPD:24/24E10" ; systematic_id "SPAC922.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022857; transmembrane transporter activity" ; colour "7" ; gene "SPAC922.05c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB CDS 5483049 5484563 . - . mRNA SPAC922.05c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5484562 5484784 . - . mRNA SPAC922.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC922.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 5'-UTR 5485106 5485370 . + . mRNA SPAC922.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC922.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5485371 5486147 . + . mRNA SPAC922.06 ; systematic_id "SPAC922.06" ; colour "7" ; gene "SPAC922.06" ; note "YNL202W, but possibly not functional orthologs as pombe seems to be missing this peroxisomal beta oxidation pathway" ; db_xref "SPD:09/09F09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=orthologous to S. cerevisiae YNL202W; date=20070723" ; GO "GO:0004316; 3-oxoacyl-[acyl-carrier- protein]reductase activity
GO:0006633; fatty acid biosynthetic process
GO:0009105; lipoic acid biosynthetic process
GO:0009060; aerobic respiration" ; product "3-oxoacyl-[acyl-carrier-protein]reductase(predicted)" ; EC_number "1.1.1.100" ;
chromosome1 GeneDB CDS 5485371 5486147 . + . mRNA SPAC922.06 ; colour "7" ;
chromosome1 GeneDB CDS_parts 5487116 5488606 . - . mRNA SPAC922.07c ; db_xref "SPD:24/24A10" ; systematic_id "SPAC922.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR170C and YMR169C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004028; 3-chloroallyl aldehyde dehydrogenase activity
GO:0006081; aldehyde metabolism
GO:0019483; beta-alanine biosynthesis
GO:0006598; polyamine catabolism" ; gene "SPAC922.07c" ; product "aldehyde dehydrogenase (predicted)" ; EC_number "1.2.1.5" ;
chromosome1 GeneDB CDS 5487116 5488606 . - . mRNA SPAC922.07c ; colour "7" ;
chromosome1 GeneDB 5'-UTR 5488605 5488740 . - . mRNA SPAC922.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC922.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB 3'-UTR 5489181 5489384 . - . mRNA SPAC869.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC869.11" ; systematic_id "SPAC869.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5489385 5491127 . - . mRNA SPAC869.11 ; systematic_id "SPAC869.11" ; colour "2" ; gene "cat1 ||| SPAC869.11 ||| SPAC922.08c" ; Alias "cat1" ; db_xref "SPD:35/35H10" ; synonym "SPAC922.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:18219492; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=complementation, functionally complements S. cerevisiae CAN1; db_xref=PMID:18219492; date=20101012" ; GO "GO:0005887; integral to plasma membrane
GO:0015189; L-lysine transmembrane transporter activity
GO:0015181; arginine transmembrane transporter activity
GO:0015181; arginine transmembrane transporter activity
GO:0043091; L-arginine import
GO:0034226; lysine import
GO:0003333; amino acid transmembbrane transport" ; primary_name "cat1" ; product "cationic amino acid transporter Cat1" ;
chromosome1 GeneDB CDS 5489385 5491127 . - . mRNA SPAC869.11 ; colour "2" ;
chromosome1 GeneDB misc_feature 5489518 5490658 . + . misc_feature unknown_4513 ; note "nominal overlap with cosmid SPAC922 and cosmid SPAC869" ;
chromosome1 GeneDB 5'-UTR 5491126 5491437 . - . mRNA SPAC869.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC869.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5493222 5494880 . + . mRNA SPAC869.10c ; systematic_id "SPAC869.10c" ; colour "7" ; db_xref "SPD:34/34G09" ; Alias "put4" ; GO "GO:0005886; plasma membrane
GO:0015193; L-proline permease activity
GO:0035524; proline transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR348C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, expression induced by proline; db_xref=PMID:????????; date=20100504" ; primary_name "put4" ; product "proline specific plasma membrane permease Put4 (predicted)" ;
chromosome1 GeneDB CDS 5493222 5494880 . + . mRNA SPAC869.10c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5494881 5494899 . + . mRNA SPAC869.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC869.10c" ; systematic_id "SPAC869.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB LTR 5496305 5496655 . - . LTR unknown_4514 ; note "TF1 LTR" ;
chromosome1 GeneDB CDS_parts 5497041 5497391 . - . mRNA SPAC869.09 ; db_xref "SPD:02/02C03" ; systematic_id "SPAC869.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa conidiation-specific protein 6; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC22G7.11C and SPAC11D3.01C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC869.09" ; product "conserved fungal protein" ;
chromosome1 GeneDB CDS 5497041 5497391 . - . mRNA SPAC869.09 ; colour "10" ;
chromosome1 GeneDB CDS_parts 5498273 5498965 . - . mRNA SPAC869.08 ; systematic_id "SPAC869.08" ; colour "10" ; gene "SPAC869.08 ||| pcm2" ; Alias "pcm2" ; db_xref "SPD:08/08A11" ; GO "GO:0004719; protein-L-isoaspartate (D-aspartate) O- methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Protein Carboxyl Methyltransferase; date=20100301 ||| term=human PCMT1 ortholog; date=20100715" ; primary_name "pcm2" ; product "protein-L-isoaspartate O-methyltransferase Pcm2 (predicted)" ; EC_number "2.1.1.77" ; reserved_name "pcm2" ;
chromosome1 GeneDB CDS 5498273 5498965 . - . mRNA SPAC869.08 ; colour "10" ;
chromosome1 GeneDB CDS_parts 5499782 5501092 . + . mRNA SPAC869.07c ; systematic_id "SPAC869.07c" ; colour "2" ; gene "mel1 ||| SPAC869.07c" ; note "MEL genes are absent from S. cerevisiaie sequenced strain" ; Alias "mel1" ; db_xref "SPD:44/44C02" ; GO "GO:0004557; alpha-galactosidase activity
GO:0005995; melibiose catabolism
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=experimental tools, gene reporter system; db_xref=PMID:15580593; cv=ex_tools; date=20060222 ||| term=orthologous to S. cerevisiae MEL2 and MEL5 and MEL6 and MEL1; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mel1" ; product "alpha-galactosidase, melibiase" ; EC_number "3.2.1.22" ;
chromosome1 GeneDB CDS 5499782 5501092 . + . mRNA SPAC869.07c ; colour "2" ;
chromosome1 GeneDB CDS_parts 5502575 5503186 . + . mRNA SPAC869.06c ; db_xref "SPD:06/06H01" ; systematic_id "SPAC869.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0043169; cation binding" ; gene "SPAC869.06c" ; product "HHE domain cation binding protein (predicted)" ;
chromosome1 GeneDB CDS 5502575 5503186 . + . mRNA SPAC869.06c ; colour "10" ;
chromosome1 GeneDB misc_RNA 5504488 5505476 . + . misc_RNA SPNCRNA.279 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.279" ; synonym "SPNG1066" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5505621 5505899 . + . mRNA SPAC869.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC869.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5505900 5508422 . + . mRNA SPAC869.05c ; db_xref "SPD:29/29B12" ; systematic_id "SPAC869.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR294W and YLR092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0008272; sulfate transport
GO:0005886; plasma membrane
GO:0015116; sulfate transporter activity" ; gene "SPAC869.05c" ; product "sulfate transporter (predicted)" ;
chromosome1 GeneDB CDS 5505900 5508422 . + . mRNA SPAC869.05c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5508423 5508487 . + . mRNA SPAC869.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC869.05c" ; systematic_id "SPAC869.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5511137 5512369 . - . mRNA SPAC869.04 ; db_xref "SPD:19/19F07" ; systematic_id "SPAC869.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004328; formamidase activity
GO:0034641; cellular nitrogen compound metabolic process" ; colour "7" ; gene "SPAC869.04" ; product "formamidase-like protein (predicted)" ;
chromosome1 GeneDB CDS 5511137 5512369 . - . mRNA SPAC869.04 ; colour "7" ;
chromosome1 GeneDB CDS_parts 5512757 5514742 . + . mRNA SPAC869.03c ; db_xref "SPD:46/46C05" ; systematic_id "SPAC869.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL016C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0015204; urea transporter activity
GO:0071918; urea transmembrane transport
GO:0005886; plasma membrane" ; gene "SPAC869.03c" ; product "urea transporter (predicted)" ;
chromosome1 GeneDB CDS 5512757 5514742 . + . mRNA SPAC869.03c ; colour "7" ;
chromosome1 GeneDB misc_RNA 5516040 5516265 . + . misc_RNA SPNCRNA.280 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.280" ; synonym "SPNG1068" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_RNA 5516331 5516951 . + . misc_RNA SPNCRNA.281 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.281" ; synonym "SPNG1069" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB misc_RNA 5517028 5517494 . + . misc_RNA SPNCRNA.282 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.282" ; synonym "SPNG1070" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5517865 5517958 . + . mRNA SPAC869.02c ; ID "SPAC869.02c" ; systematic_id "SPAC869.02c" ; gene "SPAC869.02c" ; note "mRNA from AU010057" ;
chromosome1 GeneDB CDS_parts 5517959 5519242 . + . mRNA SPAC869.02c ; systematic_id "SPAC869.02c" ; colour "7" ; gene "SPAC869.02c" ; note "closest S. cerevisiae protein is YGR234W, but this does not appear to be a true ortholog as clustering shows closer relationship with bacterial and other fungal oxidoreductases, phyletic pattern could be a result of lineage specific gene losses or horizontal transfer in both or either organisms, although they are likely to be functionally equivalent; annotated to 1.14.12.17 from similarity to FHP_CANNO, but could be 1.7.99.7 reverse reaction" ; db_xref "SPD:22/22C04" ; GO "GO:0008941; nitric oxide dioxygenase activity
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0051409; response to nitrosative stress
GO:0070458; cellular detoxification of nitrogen compound
GO:0050660; FAD binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "nitric oxide dioxygenase (predicted)" ; EC_number "1.14.12.17" ;
chromosome1 GeneDB CDS 5517959 5519242 . + . mRNA SPAC869.02c ; colour "7" ;
chromosome1 GeneDB 3'-UTR 5519243 5519323 . + . mRNA SPAC869.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC869.02c" ; systematic_id "SPAC869.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5521357 5523108 . - . mRNA SPAC869.01 ; db_xref "SPD:36/36A07" ; systematic_id "SPAC869.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827" ; colour "10" ; gene "SPAC869.01" ; product "amidase (predicted)" ;
chromosome1 GeneDB CDS 5521357 5523108 . - . mRNA SPAC869.01 ; colour "10" ;
chromosome1 GeneDB misc_feature 5524764 5524863 . + . misc_feature unknown_4515 ; note "nominal overlap with cosmid c869" ;
chromosome1 GeneDB misc_feature 5524764 5524863 . - . misc_feature unknown_4516 ; note "nominal overlap with cosmid SPAC186, EM:AL157811 S. pombe chromosome 1" ;
chromosome1 GeneDB misc_feature 5524764 5527692 . + . misc_feature unknown_4517 ; note "gene free region" ;
chromosome1 GeneDB misc_RNA 5524889 5525299 . - . misc_RNA SPNCRNA.283 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.283" ; synonym "SPNG1072" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome1 GeneDB misc_RNA 5525499 5525873 . + . misc_RNA SPNCRNA.284 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.284" ; synonym "SPNG1073" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB 5'-UTR 5527572 5527691 . + . mRNA SPAC186.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC186.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5527692 5528672 . + . mRNA SPAC186.01 ; db_xref "SPD:14/14B06" ; systematic_id "SPAC186.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=DIPSY domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; qualifier=O-linked; evidence=ISS; cv=pt_mod; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; colour "12" ; gene "SPAC186.01" ; product "cell surface glycoprotein (predicted), DIPSY family" ;
chromosome1 GeneDB CDS 5527692 5528672 . + . mRNA SPAC186.01 ; colour "12" ;
chromosome1 GeneDB CDS_parts 5529962 5530960 . - . mRNA SPAC186.02c ; db_xref "SPD:14/14F04" ; systematic_id "SPAC186.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC186.07C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=20070719 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "10" ; gene "SPAC186.02c" ; product "hydroxyacid dehydrogenase (predicted)" ;
chromosome1 GeneDB CDS 5529962 5530960 . - . mRNA SPAC186.02c ; colour "10" ;
chromosome1 GeneDB misc_RNA 5531267 5531539 . + . misc_RNA SPNCRNA.96 ; db_xref "EMBL:AU008985" ; systematic_id "SPNCRNA.96" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU008985; date=20050412 ||| term=genome organization, low complexity gene free region; qualifier=predicted; db_xref=EMBL:AU008985; cv=genome_org; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU008985; date=20050412" ; gene "SPNCRNA.96" ; product "non-coding RNA (predicted)" ; note "mRNA from AU008985; not associated with an ORF; possible 5' UTR for SPAC186.02" ;
chromosome1 GeneDB misc_feature 5531540 5535197 . + . misc_feature unknown_4518 ; note "gene free region" ;
chromosome1 GeneDB CDS_parts 5535198 5536280 . + . mRNA SPAC186.03 ; db_xref "SPD:16/16H02" ; systematic_id "SPAC186.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR155C and YLR157C and YLR158C and YLR160C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006530; asparagine catabolic process
GO:0009986; cell surface" ; colour "7" ; gene "SPAC186.03" ; product "L-asparaginase (predicted)" ;
chromosome1 GeneDB CDS 5535198 5536280 . + . mRNA SPAC186.03 ; colour "7" ;
chromosome1 GeneDB repeat_region 5538038 5538097 . - . repeat_region unknown_4519 ; note "duplicated region in c977 S. pombe chromosome 1: sub telomeric region" ;
chromosome1 GeneDB CDS_parts 5538574 5539017 . - . mRNA SPAC186.04c ; db_xref "SPD:05/05C09" ; systematic_id "SPAC186.04c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC186.04c" ; product "pseudogene, similar to N-terminal of transmembrane channel" ;
chromosome1 GeneDB CDS 5538574 5539017 . - . mRNA SPAC186.04c ; colour "13" ;
chromosome1 GeneDB repeat_region 5538601 5539019 . - . repeat_region unknown_4520 ; note "duplicated region in c977 S. pombe chromosome 1: sub telomeric region" ;
chromosome1 GeneDB CDS_parts 5540350 5541138 . - . mRNA SPAC186.05c ; db_xref "SPD:09/09H08" ; systematic_id "SPAC186.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR187W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC186.05c" ; product "human TMEM165 homolog" ;
chromosome1 GeneDB CDS 5540350 5541138 . - . mRNA SPAC186.05c ; colour "10" ;
chromosome1 GeneDB LTR 5541543 5541852 . - . LTR unknown_4521 ; note "719 (-1) 44 349 Tf2-type LTR" ;
chromosome1 GeneDB misc_feature 5542073 5542973 . + . misc_feature SPAC186.06 ; systematic_id "SPAC186.06" ; note "extended gene which now appear to be pseudo" ;
chromosome1 GeneDB CDS_parts 5542419 5542973 . + . mRNA SPAC186.06 ; db_xref "SPD:05/05F12" ; systematic_id "SPAC186.06" ; GO "GO:0030968; endoplasmic reticulum unfolded protein response" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human MAWBP ortholog; date=20091004 ||| term=warning, proteomics data indicates an N terminally extended version of this gene which would contain and upstream stop codon and a frameshift; db_xref=PMID:21270388; date=20110201" ; colour "7" ; gene "SPAC186.06" ; product "ER unfolded protein response protein (predicted)" ;
chromosome1 GeneDB CDS 5542419 5542973 . + . mRNA SPAC186.06 ; colour "7" ;
chromosome1 GeneDB misc_RNA 5543364 5543438 . + . misc_RNA SPNCRNA.310 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.310" ; synonym "SPNG1077" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome1 GeneDB CDS_parts 5545615 5546613 . - . mRNA SPAC186.07c ; db_xref "SPD:14/14F05" ; systematic_id "SPAC186.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC186.02C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=20070913 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "10" ; gene "SPAC186.07c" ; product "hydroxyacid dehydrogenase (predicted)" ;
chromosome1 GeneDB CDS 5545615 5546613 . - . mRNA SPAC186.07c ; colour "10" ;
chromosome1 GeneDB misc_RNA 5546205 5546648 . + . misc_RNA SPNCRNA.61 ; Alias "prl61" ; db_xref "EMBL:AB084873 ||| PMID:12597277" ; systematic_id "SPNCRNA.61" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl61" ; gene "prl61 ||| SPNCRNA.61" ; product "antisense RNA (predicted)" ;
chromosome1 GeneDB repeat_region 5547479 5547622 . + . repeat_region unknown_4522 ; note "region duplicated in c16A3; c5G8; c569; putative telomere associated fragment" ;
chromosome1 GeneDB CDS_parts 5548884 5550012 . - . mRNA SPAC186.08c ; db_xref "SPD:17/17G04" ; systematic_id "SPAC186.08c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100827 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0004459; L-lactate dehydrogenase activity
GO:0006089; lactate metabolic process" ; gene "SPAC186.08c" ; product "L-lactate dehydrogenase (predicted)" ; EC_number "1.1.1.27" ;
chromosome1 GeneDB CDS 5548884 5549819 . - . mRNA SPAC186.08c ; colour "7" ;
chromosome1 GeneDB CDS 5549956 5550012 . - . mRNA SPAC186.08c ; colour "7" ;
chromosome1 GeneDB misc_feature 5549820 5549836 . - . misc_feature unknown_4523 ; colour "6" ; note "ctaacttaatattctag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5549950 5549955 . - . misc_feature unknown_4524 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome1 GeneDB CDS_parts 5552811 5554529 . + . mRNA SPAC186.09 ; db_xref "SPD:45/45F03" ; systematic_id "SPAC186.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC1F8.07C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004737; pyruvate decarboxylase activity
GO:0009063; amino acid catabolic process
GO:0006091; generation of precursor metabolites and energy
GO:0006090; pyruvate metabolic process" ; colour "7" ; gene "SPAC186.09" ; product "pyruvate decarboxylase (predicted)" ;
chromosome1 GeneDB CDS 5552811 5554529 . + . mRNA SPAC186.09 ; colour "7" ;
chromosome1 GeneDB misc_feature 5554844 5554939 . + . misc_feature unknown_4525 ; note "nominal overlap with SPAC186 S. pombe chromosome 1" ;
chromosome1 GeneDB repeat_region 5555691 5556879 . + . repeat_region unknown_4526 ; note "duplicated region in 977" ;
chromosome1 GeneDB CDS_parts 5555716 5556768 . + . mRNA SPAC750.01 ; systematic_id "SPAC750.01" ; pseudo "_no_value" ; colour "13" ; gene "SPAC750.01" ; product "pseudogene" ; note "no initiator Methionine; " ;
chromosome1 GeneDB CDS 5555716 5556768 . + . mRNA SPAC750.01 ; colour "13" ;
chromosome1 GeneDB LTR 5558866 5559091 . - . LTR unknown_4527 ; note "251 (-1) 56 275 Tf2-type LTR" ;
chromosome1 GeneDB repeat_region 5559353 5560691 . + . repeat_region unknown_4528 ; note "duplicated region in c977 " ;
chromosome1 GeneDB repeat_region 5559366 5570144 . + . repeat_region unknown_4529 ; note "duplicated region in c1348" ;
chromosome1 GeneDB CDS_parts 5560189 5561646 . - . mRNA SPAC750.02c ; db_xref "SPD:51/51D10" ; systematic_id "SPAC750.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=similar to S. pombe SPBC1348.05 and SPAPB1A11.01 and SPBPB2B2.16c and SPCC1529.01; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; gene "SPAC750.02c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB CDS 5560189 5561646 . - . mRNA SPAC750.02c ; colour "7" ;
chromosome1 GeneDB repeat_region 5562559 5567158 . + . repeat_region unknown_4530 ; note "duplicated region in c977" ;
chromosome1 GeneDB CDS_parts 5562608 5563045 . - . mRNA SPAC750.03c ; systematic_id "SPAC750.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC1348.04 and SPAC977.03; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=warning, possible horizontal transfer; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100902" ; colour "10" ; gene "SPAC750.03c" ; product "methyltransferase (predicted)" ;
chromosome1 GeneDB CDS 5562608 5563045 . - . mRNA SPAC750.03c ; colour "10" ;
chromosome1 GeneDB CDS_parts 5564211 5564651 . - . mRNA SPAC750.04c ; systematic_id "SPAC750.04c" ; controlled_curation "term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPAC750.04c" ; product "S. pombe specific 5Tm protein family" ;
chromosome1 GeneDB CDS 5564211 5564651 . - . mRNA SPAC750.04c ; colour "12" ;
chromosome1 GeneDB repeat_region 5564531 5565349 . - . repeat_region unknown_4531 ; note "region duplicated in SPAC1952 S. pombe chromosome 1" ;
chromosome1 GeneDB 3'-UTR 5565881 5566205 . - . mRNA SPAC750.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAC750.05c" ; systematic_id "SPAC750.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB CDS_parts 5566206 5567240 . - . mRNA SPAC750.05c ; systematic_id "SPAC750.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAC977.01 and SPBC1348.02 and SPBPB2B2.19C; date=19700101 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104" ; colour "12" ; gene "SPAC750.05c" ; product "S. pombe specific 5Tm protein family" ;
chromosome1 GeneDB CDS 5566206 5567240 . - . mRNA SPAC750.05c ; colour "12" ;
chromosome1 GeneDB 5'-UTR 5567239 5567565 . - . mRNA SPAC750.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPAC750.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome1 GeneDB repeat_region 5568686 5579133 . + . repeat_region unknown_4532 ; note "duplicated region in c212" ;
chromosome1 GeneDB CDS_parts 5568903 5569803 . - . mRNA SPAC750.06c ; db_xref "SPD:52/52E01" ; systematic_id "SPAC750.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; gene "SPAC750.06c" ; product "S. pombe specific DUF999 protein family 4" ;
chromosome1 GeneDB CDS 5568903 5569255 . - . mRNA SPAC750.06c ; colour "12" ;
chromosome1 GeneDB CDS 5569314 5569803 . - . mRNA SPAC750.06c ; colour "12" ;
chromosome1 GeneDB misc_feature 5569256 5569272 . - . misc_feature unknown_4533 ; colour "6" ; note "ctaataatttaaaatag, splice branch and acceptor" ;
chromosome1 GeneDB misc_feature 5569308 5569313 . - . misc_feature unknown_4534 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome1 GeneDB LTR 5570061 5570383 . - . LTR unknown_4535 ; note "698 (-1) 24 345 Tf2-type LTR" ;
chromosome1 GeneDB misc_feature 5570402 5575163 . - . misc_feature unknown_4536 ; note "low complexity gene free region" ;
chromosome1 GeneDB misc_feature 5572332 5573749 . + . misc_feature unknown_4537 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG1082 ||| warning, this transcript could be on either strand" ;
chromosome1 GeneDB repeat_region 5573224 5573335 . + . repeat_region unknown_4538 ; note "region duplicated in c1676, c21B10 x2, c28F2, c233 x2, c1676, p4C9, c21B10, c1719, c794" ;
chromosome1 GeneDB CDS_parts 5575193 5575564 . - . mRNA SPAC750.07c ; systematic_id "SPAC750.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; colour "12" ; GO "GO:0009986; cell surface" ; gene "SPAC750.07c" ; product "S. pombe specific GPI anchored protein family 1" ; note "term=truncated" ;
chromosome1 GeneDB CDS 5575193 5575564 . - . mRNA SPAC750.07c ; colour "12" ;
chromosome1 GeneDB CDS_parts 5578447 5579133 . - 0 mRNA SPAC750.08c ; systematic_id "SPAC750.08c" ; codon_start "1" ; controlled_curation "term=orthologous to S. cerevisiae YKL029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0004470; malic enzyme activity
GO:0006520; amino acid metabolism
GO:0006090; pyruvate metabolism
GO:0005739; mitochondrion
GO:0006108; malate metabolism
GO:0051287; NAD binding" ; gene "SPAC750.08c" ; product "NAD-dependent malic enzyme (predicted), partial" ;
chromosome1 GeneDB CDS 5578447 5579133 . - 0 mRNA SPAC750.08c ; colour "7" ;
chromosome1 GeneDB RealContig 1 5579133 . . . RealContig chromosome1
chromosome1 GeneDB 5'-UTR 1089307 1089673 . - . mRNA SPAC1A6.09c ; systematic_id "SPAC1A6.09c" ;
chromosome1 GeneDB 5'-UTR 1920607 1920663 . - . mRNA SPAC110.04c ; systematic_id "SPAC110.04c" ;
chromosome1 GeneDB 5'-UTR 2215792 2215814 . + . mRNA SPAC18G6.03 ; systematic_id "SPAC18G6.03" ;
chromosome1 GeneDB 3'-UTR 2594879 2594921 . - . mRNA SPAC823.09c ; systematic_id "SPAC823.09c" ;
chromosome1 GeneDB 5'-UTR 3524205 3524339 . - . mRNA SPAC16E8.12c ; systematic_id "SPAC16E8.12c" ;
chromosome1 GeneDB 5'-UTR 4138980 4139080 . - . mRNA SPAC26H5.09c ; systematic_id "SPAC26H5.09c" ;
chromosome1 GeneDB 5'-UTR 4300022 4300065 . + . mRNA SPAC25G10.03 ; systematic_id "SPAC25G10.03" ;
chromosome1 GeneDB 5'-UTR 5036664 5036918 . - . mRNA SPAC22E12.09c ; systematic_id "SPAC22E12.09c" ;
chromosome1 GeneDB mRNA 4955830 4957716 . - . mRNA SPAC1B3.15c ; db_xref "SPD:26/26D09" ; systematic_id "SPAC1B3.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=20061218 ||| term=orthologous to S. cerevisiae YGR065C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0015225; biotin transporter activity
GO:0005887; integral to plasma membrane
GO:0015878; biotin transport" ; gene "SPAC1B3.15c" ; product "vigtamin H transporter (predicted)" ;
chromosome1 GeneDB mRNA 1362175 1364122 . + . mRNA SPAC19E9.03 ; systematic_id "SPAC19E9.03" ; colour "2" ; gene "pas1 ||| SPAC57A10.01 ||| SPAC19E9.03" ; Alias "pas1" ; db_xref "SPD:19/19D07" ; synonym "SPAC57A10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; db_xref=PMID:10982385; date=19700101 ||| term=orthologous to S. cerevisiae YHR071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000307; cyclin dependent protein kinase holoenzyme complex
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0005515; protein binding
GO:2000045; regulation of G1/S transition of mitotic cell cycle
GO:0043433; negative regulation of transcription factor activity
GO:0000083; positive regulation of transcription involved in G1/S-phase of mitotic cell cycle
GO:0006468; protein phosphorylation
GO:0010963; regulation of L-arginine import
GO:0010963; regulation of L-arginine import
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0031647; regulation of protein stability
GO:0007165; signal transduction
GO:0007089; traversing start control point of mitotic cell cycle" ; primary_name "pas1" ; product "cyclin Pas1" ;
chromosome1 GeneDB mRNA 1798347 1799015 . + . mRNA SPAC1002.01 ; systematic_id "SPAC1002.01" ; colour "10" ; gene "SPAC1610.05 ||| SPAC1002.01" ; Alias "SPAC1610.05" ; db_xref "SPD:04/04F03" ; synonym "SPAC1610.05" ; controlled_curation "term=orthologous to S. cerevisiae YPL041C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; date=20040210" ; primary_name "SPAC1610.05" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 4235124 4237706 . + . mRNA SPAC1F7.08 ; systematic_id "SPAC1F7.08" ; colour "2" ; gene "fio1 ||| SPAC1F7.08" ; Alias "fio1" ; db_xref "SPD:46/46A07" ; GO "GO:0005886; plasma membrane
GO:0004322; ferroxidase activity
GO:0005515; protein binding
GO:0070627; ferrous iron import
GO:0033215; iron assimilation by reduction and transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR058W and YFL041W and YDR506C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "fio1" ; product "iron transport multicopper oxidase Fio1" ;
chromosome1 GeneDB mRNA 2700453 2700950 . + . mRNA SPAC644.15 ; systematic_id "SPAC644.15" ; colour "2" ; gene "rpp101 ||| rpp1-1 ||| SPAC644.15" ; Alias "rpp101" ; db_xref "SPD:04/04C05" ; synonym "rpp1-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL081C and YDL130W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0006414; translational elongation
GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; primary_name "rpp101" ; product "60S acidic ribosomal protein Rpp1-1" ;
chromosome1 GeneDB mRNA 3205962 3206534 . - . mRNA SPAC1486.07c ; systematic_id "SPAC1486.07c" ; colour "7" ; gene "SPAC1486.07c ||| mrpl19" ; Alias "mrpl19" ; db_xref "SPD:03/03F07" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL185C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl19" ; product "mitochondrial ribosomal protein subunit L19 (predicted)" ;
chromosome1 GeneDB mRNA 1925065 1926495 . + . mRNA SPAP14E8.03 ; Alias "bos1" ; systematic_id "SPAP14E8.03" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005484; SNAP receptor activity
GO:0005789; endoplasmic reticulum membrane" ; gene "bos1 ||| SPAP14E8.03" ; primary_name "bos1" ; product "SNARE Bos1 (predicted)" ;
chromosome1 GeneDB mRNA 1390637 1392999 . + . mRNA SPAC20G8.02 ; db_xref "SPD:46/46G07" ; systematic_id "SPAC20G8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0046872; metal ion binding
GO:0004620; phospholipase activity
GO:0044242; cellular lipid catabolic process" ; gene "SPAC20G8.02" ; product "mitochondrial DDHD family phospholipase (predicted)" ;
chromosome1 GeneDB mRNA 1791482 1792460 . - . mRNA SPAC1610.02c ; db_xref "SPD:09/09D03" ; systematic_id "SPAC1610.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR116C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; gene "SPAC1610.02c" ; product "mitochondrial ribosomal protein subunit L1 (predicted)" ;
chromosome1 GeneDB mRNA 5517865 5519323 . + . mRNA SPAC869.02c ; systematic_id "SPAC869.02c" ; colour "7" ; gene "SPAC869.02c" ; note "closest S. cerevisiae protein is YGR234W, but this does not appear to be a true ortholog as clustering shows closer relationship with bacterial and other fungal oxidoreductases, phyletic pattern could be a result of lineage specific gene losses or horizontal transfer in both or either organisms, although they are likely to be functionally equivalent; annotated to 1.14.12.17 from similarity to FHP_CANNO, but could be 1.7.99.7 reverse reaction" ; db_xref "SPD:22/22C04" ; GO "GO:0008941; nitric oxide dioxygenase activity
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0051409; response to nitrosative stress
GO:0070458; cellular detoxification of nitrogen compound
GO:0050660; FAD binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "nitric oxide dioxygenase (predicted)" ; EC_number "1.14.12.17" ;
chromosome1 GeneDB mRNA 537910 539847 . + . mRNA SPAC2F7.04 ; systematic_id "SPAC2F7.04" ; colour "2" ; gene "pmc2 ||| SPAC2F7.04 ||| med1" ; Alias "pmc2" ; db_xref "SPD:23/23D07" ; synonym "med1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR070W; date=20080620 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter" ; primary_name "pmc2" ; product "mediator complex subunit Pmc2/Med1" ;
chromosome1 GeneDB mRNA 2255781 2259193 . - . mRNA SPAC4G9.04c ; db_xref "SPD:37/37B04" ; systematic_id "SPAC4G9.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR228C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005849; mRNA cleavage factor complex
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation
GO:0006369; transcription termination from RNA polymerase II promoter" ; gene "SPAC4G9.04c" ; product "cleavage and polyadenylation specificity factor (predicted)" ;
chromosome1 GeneDB mRNA 4882968 4889845 . + . mRNA SPAC19B12.03 ; systematic_id "SPAC19B12.03" ; colour "2" ; gene "bgs3 ||| SPAC19B12.03" ; Alias "bgs3" ; db_xref "SPD:48/48H06" ; GO "GO:0000148; 1,3-beta-glucan synthase complex
GO:0030427; site of polarized growth
GO:0003843; beta-glucan synthase activity
GO:0051274; beta-glucan biosynthetic process
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0009826; unidimensional cell growth
GO:0032878; regulation of establishment or maintenance of cell polarity
GO: SF polarity, and remove parent; regulation of establishment or maintenance of cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061117 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12582133; date=20061117 ||| term=orthologous to S. cerevisiae YLR342W and YGR032W and YMR306W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "bgs3" ; product "1,3-beta-glucan synthase subunit Bgs3" ; EC_number "2.4.1.34" ;
chromosome1 GeneDB mRNA 4190304 4191344 . + . mRNA SPAC25B8.17 ; db_xref "SPD:12/12A07" ; systematic_id "SPAC25B8.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL100C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0004175; endopeptidase activity
GO:0016021; integral to membrane" ; gene "SPAC25B8.17" ; product "peptidase family A22" ;
chromosome1 GeneDB mRNA 386307 387816 . + . mRNA SPAC1751.03 ; systematic_id "SPAC1751.03" ; colour "2" ; note "was incorrectly annotated as COP9/signalosome complex, updated 8 Sept 2000, (PMID:15904532)" ; obsolete_name "csn7 ||| csn72 ||| csn7b" ; db_xref "SPD:23/23C02" ; synonym "SPAC31A2.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15904532; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation
GO:0016282; eukaryotic 43S preinitiation complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex" ; product "translation initiation factor eIF3m" ;
chromosome1 GeneDB mRNA 2777017 2780978 . + . mRNA SPAC1805.04 ; systematic_id "SPAC1805.04" ; colour "2" ; gene "nup132 ||| SPAC1805.04" ; Alias "nup132" ; db_xref "SPD:48/48D07" ; synonym "Nup133b" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YKR082W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0031080; Nup107-160 complex
GO:0031965; nuclear membrane
GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0005643; nuclear pore
GO:0005515; protein binding
GO:0051301; cell division
GO:0007094; mitotic spindle checkpoint
GO:0031081; nuclear pore distribution
GO:0006913; nucleocytoplasmic transport
GO:0016973; poly(A)+ mRNA export from nucleus" ; primary_name "nup132" ; product "nucleoporin Nup132" ;
chromosome1 GeneDB mRNA 1995130 1996683 . - . mRNA SPAC9G1.13c ; systematic_id "SPAC9G1.13c" ; colour "2" ; gene "SPAC9G1.13c ||| swc4" ; db_xref "SPD:44/44G09" ; Alias "swc4" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0006338; chromatin remodeling
GO:0006281; DNA repair
GO:0000812; Swr1 complex
GO:0035267; NuA4 histone acetyltransferase complex
GO:0043486; histone exchange
GO:0016573; histone acetylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YGR002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230" ; primary_name "swc4" ; product "Swr1 complex subunit Swc4" ;
chromosome1 GeneDB mRNA 2637653 2639518 . + . mRNA SPAC7D4.02c ; systematic_id "SPAC7D4.02c" ; colour "2" ; db_xref "SPD:45/45B09" ; Alias "sfp47" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, SH3 domain ubp Four Partner; cv=name_description; db_xref=PMID:20838651; date=20100415 ||| term=target is Ubp4; db_xref=PMID:20838651; date=20101001" ; GO "GO:2000158; negative regulation of ubiquitin- specific protease
GO:0005515; protein binding
GO:0034613; cellular protein localization" ; primary_name "sfp47" ; product "Ubp4 interactor Sfp47" ;
chromosome1 GeneDB mRNA 2199448 2200122 . - . mRNA SPAC1783.06c ; systematic_id "SPAC1783.06c" ; colour "2" ; db_xref "SPD:05/05B01" ; Alias "atg12" ; synonym "apg12" ; GO "GO:0005737; cytoplasm
GO:0019776; Atg8 ligase activity
GO:0031386; protein tag
GO:0006501; C-terminal protein lipidation
GO:0030437; ascospore formation
GO:0000045; autophagic vacuole formation
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032258; CVT pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR217W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Atg5; qualifier=predicted; date=20091125 ||| term=phenotype, sporulation defects; db_xref=PMID:19778961; cv=phenotype; date=20091126" ; primary_name "atg12" ; product "autophagy associated ubiquitin-like modifier Atg12" ;
chromosome1 GeneDB mRNA 4458813 4460858 . - . mRNA SPAC9E9.10c ; systematic_id "SPAC9E9.10c" ; colour "2" ; gene "cbh1 ||| cbh ||| SPAC9E9.10c" ; Alias "cbh1" ; db_xref "SPD:25/25A09" ; synonym "cbh" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CENP-B box; date=19700101 ||| term=orthologous to S. cerevisiae YDR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000790; nuclear chromatin
GO:0000780; condensed nuclear chromosome, pericentric region
GO:0019237; centromeric DNA binding
GO:0046983; protein dimerization activity
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0016570; histone modification
GO:0005515; protein binding" ; primary_name "cbh1" ; product "CENP-B homolog Cbh1" ;
chromosome1 GeneDB mRNA 2174878 2176360 . - . mRNA SPAC13F5.03c ; systematic_id "SPAC13F5.03c" ; colour "2" ; gene "SPAC13F5.03c ||| gld1" ; Alias "gld1" ; db_xref "SPD:20/20H10" ; GO "GO:0008270; zinc ion binding
GO:0008888; glycerol dehydrogenase activity
GO:0008888; glycerol dehydrogenase activity
GO:0006071; glycerol metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, regulated by glucose; db_xref=PMID:20396879; date=20100622 ||| term=warning, possible horizontal transfer; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100902" ; primary_name "gld1" ; product "mitochondrial glycerol dehydrogenase Gld1" ;
chromosome1 GeneDB mRNA 608972 610703 . + . mRNA SPAC3H8.10 ; systematic_id "SPAC3H8.10" ; colour "2" ; gene "spo20 ||| sec14 ||| SPAC3H8.10" ; Alias "spo20" ; db_xref "SPD:18/18E01" ; synonym "sec14" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11294895; date=19700101 ||| term=orthologous to S. cerevisiae YMR079W and YKL091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; GO "GO:0032153; cell division site
GO:0051286; cell tip
GO:0005829; cytosol
GO:0005634; nucleus
GO:0005628; prospore membrane
GO:0008525; phosphatidylcholine transporter activity
GO:0006893; Golgi to plasma membrane transport
GO:0033205; cell cycle cytokinesis
GO:0015914; phospholipid transport
GO:0031321; prospore formation
GO:0030437; sporulation (sensu Fungi)
GO:0008526; phosphatidylinositol transporter activity
GO:0010570; regulation of filamentous growth" ; primary_name "spo20" ; product "sec14 cytosolic factor family Sec14" ;
chromosome1 GeneDB mRNA 1156487 1159466 . - . mRNA SPAC22A12.01c ; systematic_id "SPAC22A12.01c" ; colour "2" ; gene "pso2 ||| SPAC56F8.17c ||| SPAC22A12.01c" ; Alias "pso2" ; db_xref "SPD:35/35B10" ; synonym "snm1 ||| SPAC56F8.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR137C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005634; nucleus
GO:0006281; DNA repair
GO:0003684; damaged DNA binding
GO:0008409; 5'-3' exonuclease activity" ; primary_name "pso2" ; product "DNA 5' exonuclease (predicted)" ;
chromosome1 GeneDB mRNA 1486881 1488203 . - . mRNA SPAC9.12c ; systematic_id "SPAC9.12c" ; colour "7" ; gene "atp12 ||| SPAC9.12c" ; Alias "atp12" ; db_xref "SPD:12/12H06" ; GO "GO:0005759; mitochondrial matrix
GO:0051082; unfolded protein binding
GO:0033615; mitochondrial proton-transporting ATP synthase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, ATPAF2 deficiency; date=20061010 ||| term=orthologous to S. cerevisiae YJL180C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp12" ; product "F1-ATPase chaperone Atp12 (predicted)" ;
chromosome1 GeneDB mRNA 5243071 5243610 . + . mRNA SPAC14C4.08 ; systematic_id "SPAC14C4.08" ; colour "2" ; gene "mug5 ||| SPAC14C4.08" ; Alias "mug5" ; db_xref "SPD:42/42C06" ; GO "GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug5" ; product "meiotically upregulated gene Mug5" ;
chromosome1 GeneDB mRNA 3969833 3970789 . - . mRNA SPAC11G7.05c ; db_xref "SPD:13/13E07" ; systematic_id "SPAC11G7.05c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR221C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004314; [acyl-carrier-protein] S- malonyltransferase activity
GO:0006631; fatty acid metabolism
GO:0009060; aerobic respiration
GO:0006633; fatty acid biosynthesis" ; gene "SPAC11G7.05c" ; product "mitochondrial [acyl-carrier protein] S- malonyltransferase Mct1 (predicted)" ; EC_number "2.3.1.39" ;
chromosome1 GeneDB mRNA 5394528 5397195 . - . mRNA SPAC3G6.09c ; systematic_id "SPAC3G6.09c" ; colour "7" ; gene "tps2 ||| SPAC3G6.09c" ; Alias "tps2" ; db_xref "SPD:29/29D02" ; GO "GO:0004805; trehalose-phosphatase activity
GO:0005946; alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)
GO:0005992; trehalose biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR074W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "tps2" ; product "trehalose-phosphate synthase Tps2 (predicted)" ; EC_number "3.1.3.12" ;
chromosome1 GeneDB mRNA 4878579 4880716 . - . mRNA SPAC19B12.02c ; systematic_id "SPAC19B12.02c" ; colour "2" ; gene "SPAC19B12.02c ||| gas1" ; Alias "gas1" ; db_xref "SPD:45/45D12" ; GO "GO:0009277; fungal-type cell wall
GO:0009897; external side of plasma membrane
GO:0005886; plasma membrane
GO:0042124; 1,3-beta-glucanosyltransferase activity
GO:0071852; fungal-type cell wall organization or biogenesis
GO:0071966; fungal-type cell wall polysaccharide biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR307W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; evidence=IDA; db_xref=PMID:17230583; date=20090615" ; primary_name "gas1" ; product "cell wall protein Gas1, 1,3-beta- glucanosyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 2766283 2770704 . + . mRNA SPAC6F6.17 ; systematic_id "SPAC6F6.17" ; colour "2" ; gene "rif1 ||| tap1 ||| SPAC6F6.17 ||| SPAPJ736.01 ||| tap11" ; Alias "rif1" ; db_xref "SPD:30/30G03" ; synonym "tap1 ||| tap11 ||| SPAPJ736.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YBR275C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005724; nuclear telomeric heterochromatin
GO:0005634; nucleus
GO:0000783; telomere cap complex
GO:0005515; protein binding
GO:0031848; protection from non-homologous end joining at telomere
GO:0000723; telomere maintenance
GO:0031860; telomeric 3' overhang formation" ; primary_name "rif1" ; product "telomere length regulator protein Rif1" ;
chromosome1 GeneDB mRNA 565083 569426 . - . mRNA SPAC2F7.16c ; systematic_id "SPAC2F7.16c" ; colour "2" ; gene "SPAC2F7.16c" ; Alias "pld1" ; db_xref "SPD:30/30F07" ; GO "GO:0005628; prospore membrane
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0004630; phospholipase D activity
GO:0006887; exocytosis
GO:0046488; phosphatidylinositol metabolic process
GO:0031321; prospore formation
GO:0048015; phophoinositide-mediated signaling" ; controlled_curation "term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YKR031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=misc, regulated by oleic acid; db_xref=PMID:20579016; date=20101021" ; primary_name "pld1" ; product "phospholipase D, Pld1" ; EC_number "3.1.4.4" ;
chromosome1 GeneDB mRNA 1242076 1243012 . - . mRNA SPAC56E4.02c ; systematic_id "SPAC56E4.02c" ; colour "7" ; gene "alg13 ||| SPAC56E4.02c" ; Alias "alg13" ; db_xref "SPD:04/04F02" ; GO "GO:0005783; endoplasmic reticulum
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0004577; N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL047W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "alg13" ; product "N-acetylglucosaminyldiphosphodolichol N- acetylglucosaminyltransferase Alg13 (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB mRNA 3019456 3020336 . - . mRNA SPAC31G5.17c ; systematic_id "SPAC31G5.17c" ; colour "7" ; gene "rps1001 ||| rps10-1 ||| SPAC31G5.17c" ; Alias "rps1001" ; db_xref "SPD:07/07E09" ; synonym "rps10-1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR293W and YMR230W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000054; ribosome export from nucleus" ; primary_name "rps1001" ; product "40S ribosomal protein S10 (predicted)" ;
chromosome1 GeneDB mRNA 1670355 1672122 . + . mRNA SPAC343.13 ; db_xref "SPD:35/35F01" ; systematic_id "SPAC343.13" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL080C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0032543; mitochondrial translation
GO:0006400; tRNA modification" ; gene "SPAC343.13" ; product "mitochondrial glutamyl-tRNA amidotransferase beta subunit (predicted)" ;
chromosome1 GeneDB mRNA 3680502 3683145 . - . mRNA SPAC15A10.03c ; systematic_id "SPAC15A10.03c" ; colour "2" ; gene "rhp54 ||| rad54 ||| SPAC15A10.03c" ; Alias "rhp54" ; db_xref "SPD:39/39G01" ; synonym "rad54" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; qualifier=deletion; cv=phenotype; db_xref=PMID:8834792; date=19700101 ||| term=phenotype, sensitive to IR; qualifier=deletion; cv=phenotype; db_xref=PMID:8834792; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=high_penetrance|deletion; cv=phenotype; db_xref=PMID:8834792; date=19700101 ||| term=phenotype, nuclear morphology defects; qualifier=low_penetrance|deletion; cv=phenotype; db_xref=PMID:8834792; date=19700101 ||| term=phenotype, chromosome segregation defects, chromosome loss; qualifier=high_penetrance|deletion; cv=phenotype; db_xref=PMID:8834792; date=19700101 ||| term=phenotype, DNA recombination defects, meiotic; db_xref=PMID:18426916; residue=KEN26AAA; cv=phenotype; date=20091124 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:18426916; residue=KEN26AAA; qualifier=diploid; cv=phenotype; date=20091124 ||| term=disease associated, cancer; date=20060920 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YGL163C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, accumulation and persistence of Sfr1 foci in rhp54 delta cells; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, accumulation and persistence of Swi5 foci in rhp54 delta cells; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=modification, ubiquitinated; evidence=TAS; cv=pt_mod; db_xref=PMID:18426916; date=20091124 ||| term=protein sequence feature, KEN box; evidence=ISS; cv=sequence_feature; db_xref=PMID:18426916; date=20091124" ; GO "GO:0005524; ATP binding
GO:0003677; DNA binding
GO:0015616; DNA translocase activity
GO:0033170; DNA-protein loading ATPase activity
GO:0006281; DNA repair
GO:0006338; chromatin remodeling
GO:0000724; double-strand break repair via homologous recombination
GO:0030491; heteroduplex formation
GO:0006311; meiotic gene conversion
GO:0007131; reciprocal meiotic recombination" ; primary_name "rhp54" ; product "Rad54 homolog Rhp54" ;
chromosome1 GeneDB mRNA 5527572 5528672 . + . mRNA SPAC186.01 ; db_xref "SPD:14/14B06" ; systematic_id "SPAC186.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=DIPSY domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; qualifier=O-linked; evidence=ISS; cv=pt_mod; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; colour "12" ; gene "SPAC186.01" ; product "cell surface glycoprotein (predicted), DIPSY family" ;
chromosome1 GeneDB mRNA 4584536 4585199 . - . mRNA SPAC12B10.06c ; db_xref "SPD:04/04D05" ; systematic_id "SPAC12B10.06c" ; GO "GO:0005749; mitochondrial respiratory chain complex II
GO:0008177; succinate dehydrogenase (ubiquinone) activity
GO:0045333; cellular respiration
GO:0006121; mitochondrial electorn transport, succinate to ubiquinone
GO:0006099; tricarboxylic acid cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=disease associated, paraganglioma; date=20090905 ||| term=disease associated, pheochromocytoma; date=20091120 ||| term=human SDH5 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; gene "SPAC12B10.06c" ; product "succinate dehydrogenase subunit Emi5 (predicted)" ;
chromosome1 GeneDB mRNA 3586182 3588288 . + . mRNA SPAC17A2.14 ; systematic_id "SPAC17A2.14" ; colour "2" ; gene "SPAC17G6.01 ||| SPAC17A2.14" ; Alias "SPAC17G6.01" ; db_xref "SPD:26/26C02" ; synonym "SPAC17G6.01" ; GO "GO:0005887; integral to plasma membrane
GO:0015095; magnesium ion transporter activity
GO:0015693; magnesium ion transport
GO:0010045; response to nickel ion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL064W and YOL130W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "SPAC17G6.01" ; product "CorA family magnesium ion transporter" ;
chromosome1 GeneDB mRNA 3369700 3371298 . + . mRNA SPAC26A3.16 ; systematic_id "SPAC26A3.16" ; colour "2" ; note "CARE dhp1 is in same cosmid" ; Alias "dph1" ; db_xref "SPD:16/16C12" ; synonym "ucp5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR276W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene name conflict; cv=warning; date=20100120 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; GO "GO:0005634; nucleus
GO:0031593; polyubiquitin binding
GO:0030433; ER-associated protein catabolism
GO:0042177; negative regulation of protein catabolism
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0030474; spindle pole body duplication" ; primary_name "dph1" ; product "UBA domain protein Dph1" ;
chromosome1 GeneDB mRNA 4195642 4195959 . + . mRNA SPAC683.03 ; db_xref "SPD:51/51G03" ; systematic_id "SPAC683.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC683.03" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3023308 3028037 . + . mRNA SPAC31G5.19 ; db_xref "SPD:48/48D10" ; systematic_id "SPAC31G5.19" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=bromodomain; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YGR270W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016887; ATPase activity
GO:0005524; ATP binding" ; gene "SPAC31G5.19" ; product "ATPase with bromodomain protein (predicted)" ;
chromosome1 GeneDB mRNA 3528159 3529446 . + . mRNA SPAC16E8.15 ; systematic_id "SPAC16E8.15" ; colour "2" ; gene "tif45 ||| tif1 ||| SPAC16E8.15" ; Alias "tif45" ; db_xref "SPD:11/11D12" ; synonym "tif1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; evidence=ISS; residue=208; cv=pt_mod; date=20091216" ; GO "GO:0000339; RNA cap binding
GO:0016281; eukaryotic translation initiation factor 4F complex
GO:0006413; translational initiation
GO:0003743; translation initiation factor activity
GO:0000184; mRNA catabolism, nonsense-mediated decay" ; primary_name "tif45" ; product "translation initiation factor eIF4E, 4F complex subunit" ;
chromosome1 GeneDB mRNA 191928 194075 . - . mRNA SPAC13G6.10c ; systematic_id "SPAC13G6.10c" ; colour "2" ; db_xref "SPD:45/45C06" ; Alias "asl1" ; GO "GO:0010339; external side of cell wall
GO:0004553; hydrolase activity, hydrolyzing O- glycosyl compounds
GO:0046379; extracellular polysaccharide metabolic process
GO:0071966; fungal-type cell wall polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to N. crassa B24p11.210; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=name description, alkali- sensitive linkage; db_xref=PMID:17230583; date=20090615" ; primary_name "asl1" ; product "cell wall protein Asl1, predicted O-glucosyl hydrolase" ;
chromosome1 GeneDB mRNA 2025993 2026982 . - . mRNA SPAC17H9.12c ; db_xref "SPD:10/10B02" ; systematic_id "SPAC17H9.12c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL150W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0005741; mitochondrial outer membrane
GO:0004128; cytochrome-b5 reductase activity
GO:0006696; ergosterol biosynthesis
GO:0034599; cellular response to oxidative stress" ; gene "SPAC17H9.12c" ; product "NADH-cytochrome reductase (predicted)" ; EC_number "1.6.2.2" ;
chromosome1 GeneDB mRNA 1993707 1995083 . + . mRNA SPAC9G1.12 ; systematic_id "SPAC9G1.12" ; colour "2" ; gene "cpd1 ||| SPAC9G1.12" ; Alias "cpd1" ; db_xref "SPD:17/17B09" ; GO "GO:0005634; nucleus
GO:0031515; tRNA (m1A) methyltransferase complex
GO:0016429; tRNA (adenine-N1-)-methyltransferase activity
GO:0030488; tRNA methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL125C; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "cpd1" ; product "tRNA (m1A) methyltransferase complex catalytic subunit Cpd1" ; EC_number "2.1.1.36" ;
chromosome1 GeneDB mRNA 1439274 1440543 . - . mRNA SPAC3A12.11c ; systematic_id "SPAC3A12.11c" ; colour "2" ; gene "cwf2 ||| prp3 ||| SPAC3A12.11c" ; Alias "cwf2" ; db_xref "SPD:20/20C12" ; synonym "prp3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YDL209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005681; spliceosome complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "cwf2" ; product "RNA-binding protein Cwf2" ;
chromosome1 GeneDB mRNA 1911851 1915897 . + . mRNA SPAC110.02 ; systematic_id "SPAC110.02" ; colour "2" ; gene "pds5 ||| SPAC110.02" ; Alias "pds5" ; db_xref "SPD:49/49G06" ; GO "GO:0000794; condensed nuclear chromosome
GO:0030892; mitotic cohesin complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0000070; mitotic sister chromatid segregation
GO:0006974; response to DNA damage stimulus
GO:0007062; sister chromatid cohesion
GO:0034501; protein localization to kinetochore
GO:2000281; regulation of localization of chromosome passenger complex to kinetochore
GO:2000281; regulation of histone H3-T3 phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11861765; date=19700101 ||| term=orthologous to S. cerevisiae YMR076C; date=19700101 ||| term=CUE domain protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Hrk1; qualifier=localization_target; db_xref=PMID:20929775; date=20101115" ; primary_name "pds5" ; product "cohesin-associated protein Pds5" ;
chromosome1 GeneDB mRNA 555290 558220 . + . mRNA SPAC2F7.11 ; systematic_id "SPAC2F7.11" ; colour "2" ; gene "nrd1 ||| msa2 ||| SPAC2F7.11" ; Alias "nrd1" ; db_xref "SPD:25/25F01" ; synonym "msa2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15277777; date=19700101 ||| term=orthologous to S. cerevisiae YPL184C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Ste11; qualifier=mRNA; db_xref=PMID:9671458; date=20100823" ; GO "GO:0003723; RNA binding
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0005515; protein binding" ; primary_name "nrd1" ; product "RNA-binding protein Nrd1" ;
chromosome1 GeneDB mRNA 1525031 1526151 . - . mRNA SPAC57A7.09 ; db_xref "SPD:17/17F01" ; systematic_id "SPAC57A7.09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20070212 ||| term=zinc finger protein; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPAC57A7.09" ; product "human RNF family homolog" ; note "human r31343_1 has the same domain combiantion" ;
chromosome1 GeneDB mRNA 1985757 1987228 . + . mRNA SPAC9G1.09 ; systematic_id "SPAC9G1.09" ; colour "2" ; gene "sid1 ||| SPAC9G1.09" ; Alias "sid1" ; db_xref "SPD:23/23F12" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0071775; regulation of cell cycle cytokinesis
GO:0005515; protein binding
GO:0005816; spindle pole body
GO:0031028; septation initiation signaling
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9649519; date=19700101 ||| term=phenotype, septum initiation defective; cv=phenotype; db_xref=PMID:9649519; date=20091006 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10459013; date=20100709 ||| term=phenotype, multinucleate; qualifier=deletion; db_xref=PMID:10459013; date=20100709 ||| term=GCK subfamily; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Septum Initiation Defective; db_xref=PMID:9649519; cv=name_description; date=20091006" ; primary_name "sid1" ; product "PAK-related GC kinase Sid1" ;
chromosome1 GeneDB mRNA 1100128 1101551 . - . mRNA SPAC30D11.10 ; systematic_id "SPAC30D11.10" ; colour "2" ; gene "rad22 ||| SPAC30D11.10" ; Alias "rad22" ; db_xref "SPD:23/23B03" ; synonym "rad22A" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, sumoylated; cv=pt_mod; date=19700101 ||| term=orthologous to S. cerevisiae YML032C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0003684; damaged DNA binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003697; single-stranded DNA binding
GO:0000730; DNA recombinase assembly
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000734; gene conversion at mating-type locus, DNA repair synthesis
GO:0007533; mating type switching
GO:0000711; meiotic DNA repair synthesis
GO:0051260; protein homooligomerization
GO:0005515; protein binding" ; primary_name "rad22" ; product "DNA recombination protein Rad22" ;
chromosome1 GeneDB mRNA 3884544 3886031 . + . mRNA SPAC926.02 ; db_xref "SPD:24/24A04" ; systematic_id "SPAC926.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL193W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC926.02" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 1635933 1638240 . - . mRNA SPAP27G11.14c ; systematic_id "SPAP27G11.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAP27G11.14c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 315655 317472 . + . mRNA SPAC12G12.16c ; systematic_id "SPAC12G12.16c" ; colour "7" ; gene "SPAC18B11.01c ||| SPAC12G12.16c" ; Alias "SPAC18B11.01c" ; db_xref "SPD:24/24A09" ; synonym "SPAC18B11.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=XP-G family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0006281; DNA repair
GO:0004518; nuclease activity" ; primary_name "SPAC18B11.01c" ; product "Fen1 family nuclease, XP-G family (predicted)" ;
chromosome1 GeneDB mRNA 3233633 3236215 . + . mRNA SPAC6G10.09 ; db_xref "SPD:28/28H08" ; systematic_id "SPAC6G10.09" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0004573; mannosyl-oligosaccharide glucosidase activity
GO:0009272; fungal-type cell wall biogenesis
GO:0006487; protein amino acid N-linked glycosylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC6G10.09" ; product "alpha glucosidase I Gls1 (predicted)" ; EC_number "3.2.1.106" ;
chromosome1 GeneDB mRNA 5174979 5175326 . - . mRNA SPAC26F1.05 ; systematic_id "SPAC26F1.05" ; colour "8" ; gene "SPAC26F1.05 ||| mug106" ; db_xref "SPD:02/02B07" ; Alias "mug106" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug106" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1294381 1295317 . + . mRNA SPAC1565.03 ; db_xref "SPD:04/04H02" ; systematic_id "SPAC1565.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1565.03" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4585255 4586351 . + . mRNA SPAC12B10.07 ; systematic_id "SPAC12B10.07" ; colour "2" ; gene "acp1 ||| SPAC12B10.07" ; Alias "acp1" ; db_xref "SPD:41/41G03" ; GO "GO:0008290; F-actin capping protein complex
GO:0051016; barbed-end actin filament capping
GO:0051015; actin filament binding
GO:0008360; regulation of cell shape
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0030835; negative regulation of actin filament depolymerization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030479; actin cortical patch
GO:0005884; actin filament
GO:0051286; cell tip
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL007W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15743909; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "acp1" ; product "F-actin capping protein alpha subunit" ;
chromosome1 GeneDB mRNA 1055957 1057550 . - . mRNA SPAC23C4.16c ; systematic_id "SPAC23C4.16c" ; colour "2" ; db_xref "SPD:20/20D06" ; Alias "atg15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR068W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=phenotype, sporulation defects; db_xref=PMID:19778961; cv=phenotype; date=20091126" ; GO "GO:0016298; lipase activity
GO:0030397; membrane disassembly
GO:0005775; vacuolar lumen
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0030437; ascospore formation" ; primary_name "atg15" ; product "autophagy associated lipase Atg15" ;
chromosome1 GeneDB mRNA 2382778 2385153 . + . mRNA SPAC22H10.07 ; systematic_id "SPAC22H10.07" ; colour "2" ; gene "scd2 ||| ral3 ||| SPAC22H10.07" ; Alias "scd2" ; db_xref "SPD:34/34H02" ; synonym "ral3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, stubby cells; qualifier=deletion; cv=phenotype; db_xref=PMID:7923372; date=20090217 ||| term=orthologous to S. cerevisiae YBR200W; date=19700101 ||| term=PX domain protein; date=19700101 ||| term=pathway, Ras1-Scd; cv=pathway; date=20080718 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0035091; phosphoinositide binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032878; regulation of establishment and/or maintenance of cell polarity
GO:0031137; regulation of conjugation with cellular fusion
GO:0032488; Cdc42 protein signal tansduction
GO:0071521; Cdc42 GTPase complex" ; primary_name "scd2" ; product "scaffold protein Scd2" ;
chromosome1 GeneDB mRNA 2119327 2120316 . - . mRNA SPAC20H4.05c ; db_xref "SPD:41/41G10" ; systematic_id "SPAC20H4.05c" ; GO "GO:0005737; cytoplasm
GO:0046570; methylthioribulose-1-phosphate dehydratase activity
GO:0019509; L-methionine salvage from methylthioadenosine" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; gene "SPAC20H4.05c" ; product "5'-methylthioribulose-1-phosphate dehydratase, adducin (predicted)" ;
chromosome1 GeneDB mRNA 4008511 4008693 . + . mRNA SPAC27E2.13 ; systematic_id "SPAC27E2.13" ; controlled_curation "term=warning, longest ORF in feature; cv=warning; date=20060721" ; colour "6" ; gene "SPAC27E2.13" ; product "dubious" ;
chromosome1 GeneDB mRNA 5113142 5113696 . + . mRNA SPAC29A4.17c ; db_xref "SPD:05/05F11" ; systematic_id "SPAC29A4.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=human FUNDC1 and FUNDC2 ortholog; date=20100718" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0005741; mitochondrial outer membrane" ; gene "SPAC29A4.17c" ; product "mitocondrial FUN14 family protein" ;
chromosome1 GeneDB mRNA 4928402 4929516 . - . mRNA SPAC1B3.02c ; db_xref "SPD:05/05G07" ; systematic_id "SPAC1B3.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL160W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0008270; zinc ion binding
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006325; establishment and/or maintenance of chromatin architecture
GO:0005634; nucleus" ; gene "SPAC1B3.02c" ; product "transcription elongation factor, Elf1 family (predicted)" ;
chromosome1 GeneDB mRNA 3822569 3824385 . + . mRNA SPAC4H3.01 ; db_xref "SPD:20/20G10" ; systematic_id "SPAC4H3.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER048C and YIR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding" ; gene "SPAC4H3.01" ; product "DNAJ domain protein Caj1/Djp1 type (predicted)" ;
chromosome1 GeneDB mRNA 144862 146358 . - . mRNA SPAC11D3.18c ; db_xref "SPD:24/24B10" ; systematic_id "SPAC11D3.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR260W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0015663; nicotinamide mononucleotide permease activity
GO:0035353; nicotinamide mononucleotide transmembrane transport" ; gene "SPAC11D3.18c" ; product "nicotinic acid plasma membrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 5034275 5036590 . - . mRNA SPAC22E12.09c ; systematic_id "SPAC22E12.09c" ; colour "2" ; db_xref "SPD:33/33F09" ; Alias "krp1" ; synonym "krp" ; GO "GO:0009986; cell surface
GO:0004252; serine-type endopeptidase activity
GO:0071432; peptide mating pheromone maturation involved in cojugation with cellular fusion
GO:0006508; proteolysis
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7813430; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL238W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "krp1" ; product "kexin" ; EC_number "3.4.21.-" ;
chromosome1 GeneDB mRNA 4186506 4187272 . - . mRNA SPAC25B8.15c ; db_xref "SPD:08/08E01" ; systematic_id "SPAC25B8.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL050W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0031591; wybutosine biosynthetic process
GO:0008175; tRNA methyltransferase activity
GO:0030488; tRNA methylation" ; gene "SPAC25B8.15c" ; product "wybutosine biosynthesis protein Tyw3 (predicted)" ;
chromosome1 GeneDB mRNA 3346160 3346859 . - . mRNA SPAC26A3.07c ; systematic_id "SPAC26A3.07c" ; colour "7" ; gene "rpl1101 ||| rpl11-1 ||| rpl11 ||| SPAC26A3.07c" ; Alias "rpl1101" ; db_xref "SPD:05/05C03" ; synonym "rpl11-1 ||| rpl11" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR102C and YGR085C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1101" ; product "60S ribosomal protein L11 (predicted)" ;
chromosome1 GeneDB mRNA 4155473 4156147 . + . mRNA SPAC25B8.01 ; systematic_id "SPAC25B8.01" ; colour "2" ; gene "SPAC26H5.15 ||| SPAC25B8.01 ||| dap1" ; Alias "dap1" ; db_xref "SPD:04/04H03" ; synonym "SPAC26H5.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=20061113 ||| term=name description, Damage Assistance Protein; cv=name_description; date=20061113 ||| term=gene expression, transcriptionally regulated by Sre1; db_xref=PMID:15797383; cv=gene_ex; date=20070216 ||| term=orthologous to S. cerevisiae YPL170W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0016020; membrane
GO:0008047; enzyme activator activity
GO:0020037; heme binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005496; steroid binding
GO:0006696; ergosterol biosynthesis
GO:0006696; ergosterol biosynthesis" ; primary_name "dap1" ; product "cytochrome P450 regulator Dap1" ;
chromosome1 GeneDB mRNA 4871967 4872959 . - . mRNA SPAC4F10.19c ; db_xref "SPD:06/06C01" ; systematic_id "SPAC4F10.19c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-HIT; date=19700101 ||| term=orthologous to S. cerevisiae YJR055W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human ZNHIT3 ortholog; date=20091004" ; colour "10" ; gene "SPAC4F10.19c" ; product "zf-HIT protein Hit1 (predicted)" ;
chromosome1 GeneDB mRNA 3173734 3176316 . - . mRNA SPAC3G9.05 ; db_xref "SPD:28/28A01" ; systematic_id "SPAC3G9.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YLL021W and YLR313C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0030427; site of polarized growth
GO:0005519; cytoskeletal regulatory protein binding
GO:0007266; Rho protein signal transduction
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0030010; establishment of cell polarity (sensu Fungi)
GO:0007015; actin filament organization" ; gene "SPAC3G9.05" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB mRNA 991715 993752 . - . mRNA SPAC821.07c ; systematic_id "SPAC821.07c" ; colour "2" ; gene "moc3 ||| SPAC821.07c" ; db_xref "SPD:24/24B03" ; Alias "moc3" ; GO "GO:0005634; nucleus
GO:0005634; nucleus
GO:0031137; regulation of conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0008270; zinc ion binding
GO:0003677; DNA binding
GO:0006974; response to DNA damage stimulus
GO:0071277; cellular response to calcium ion
GO:0033554; cellular response to stress
GO:0030437; sporulation (sensu Fungi)
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16273369; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Multicopy suppressor of Overexpressed Cyr1; cv=name_description; date=20100126" ; primary_name "moc3" ; product "transcription factor Moc3" ;
chromosome1 GeneDB mRNA 2961153 2962421 . - . mRNA SPAPB24D3.08c ; systematic_id "SPAPB24D3.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML131W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm" ; gene "SPAPB24D3.08c" ; product "NADP-dependent oxidoreductase (predicted)" ;
chromosome1 GeneDB mRNA 1214788 1215952 . - . mRNA SPAC10F6.05c ; systematic_id "SPAC10F6.05c" ; colour "7" ; gene "ubc6 ||| SPAC10F6.05c" ; Alias "ubc6" ; db_xref "SPD:10/10C08" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0004842; ubiquitin-protein ligase activity
GO:0030433; ER-associated protein catabolic process
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ubc6" ; product "ubiquitin conjugating enzyme Ubc6 (predicted)" ; EC_number "6.3.2.19" ;
chromosome1 GeneDB mRNA 1074331 1077518 . - . mRNA SPAC1A6.04c ; systematic_id "SPAC1A6.04c" ; colour "2" ; gene "plb1 ||| SPAC1A6.04c" ; Alias "plb1" ; db_xref "SPD:36/36G12" ; GO "GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region
GO:0004622; lysophospholipase activity
GO:0046475; glycerophospholipid catabolism
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0031670; cellular response to nutrient
GO:0071470; cellular response to osmotic stress
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "plb1" ; product "phospholipase B homolog Plb1" ; EC_number "3.1.1.5" ;
chromosome1 GeneDB mRNA 4650573 4651091 . - . mRNA SPAC144.01 ; db_xref "SPD:03/03A04" ; systematic_id "SPAC144.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC144.01" ; product "sequence orphan" ; note "confirmed intron" ;
chromosome1 GeneDB mRNA 4979881 4980925 . - . mRNA SPAC1952.08c ; db_xref "SPD:07/07D08" ; systematic_id "SPAC1952.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR456W and YPR172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0004733; pyridoxamine-phosphate oxidase activity
GO:0042818; pyridoxamine metabolic process" ; gene "SPAC1952.08c" ; product "pyridoxamine 5'-phosphate oxidase (predicted)" ;
chromosome1 GeneDB mRNA 3456707 3459015 . + . mRNA SPAC3A11.07 ; db_xref "SPD:34/34G01" ; systematic_id "SPAC3A11.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR145C and YDL085W and YML120C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; colour "7" ; GO "GO:0006116; NADH oxidation
GO:0003954; NADH dehydrogenase activity
GO:0005743; mitochondrial inner membrane" ; gene "SPAC3A11.07" ; product "NADH dehydrogenase (predicted)" ;
chromosome1 GeneDB mRNA 4774686 4775194 . - . mRNA SPAC1782.12c ; db_xref "SPD:05/05A05" ; systematic_id "SPAC1782.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPAC1782.12c" ; product "DUF423 protein" ;
chromosome1 GeneDB mRNA 648301 649393 . - . mRNA SPAC1D4.06c ; systematic_id "SPAC1D4.06c" ; colour "2" ; gene "csk1 ||| SPAC1D4.06c" ; Alias "csk1" ; db_xref "SPD:17/17B06" ; GO "; cyclin-dependent protein kinase activating kinase activity
GO:0019912; cyclin-dependent protein kinase activating kinase activity
GO:0005524; ATP binding
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0007346; regulation of mitotic cell cycle
GO:0007165; signal transduction
GO:0045903; positive regulation of translational fidelity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL139W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8467814; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Cdc2; db_xref=PMID:10226032; date=20100823" ; primary_name "csk1" ; product "cyclin-dependent kinase activating kinase Csk1" ; EC_number "2.7.1.-" ;
chromosome1 GeneDB mRNA 211714 213522 . - . mRNA SPAC24B11.08c ; db_xref "SPD:18/18E10" ; systematic_id "SPAC24B11.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL042W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005789; endoplasmic reticulum membrane
GO:0000139; Golgi membrane
GO:0006886; intracellular protein transport
GO:0030134; ER to Golgi transport vesicle" ; gene "SPAC24B11.08c" ; product "COPII-coated vesicle component Erv46 (predicted)" ;
chromosome1 GeneDB mRNA 2474717 2475727 . + . mRNA SPAC19A8.07c ; db_xref "SPD:11/11G02" ; systematic_id "SPAC19A8.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL075W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0006364; rRNA processing
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0003723; RNA binding" ; gene "SPAC19A8.07c" ; product "U3 snoRNP-associated protein Imp4 (predicted)" ;
chromosome1 GeneDB mRNA 2052831 2057065 . + . mRNA SPAC607.10 ; systematic_id "SPAC607.10" ; colour "2" ; gene "spo3 ||| SPAC607.10" ; Alias "spo3" ; db_xref "SPD:29/29H12" ; GO "GO:0031321; prospore formation
GO:0005628; prospore membrane
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "spo3" ; product "sporulation protein Spo3" ;
chromosome1 GeneDB mRNA 3915615 3917531 . - . mRNA SPAC323.06c ; systematic_id "SPAC323.06c" ; colour "7" ; gene "uba5 ||| SPAC323.06c" ; Alias "uba5" ; db_xref "SPD:26/26G01" ; GO "GO:0019781; NEDD8 activating enzyme activity
GO:0045116; protein neddylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "uba5" ; product "NEDD8 activating enzyme (predicted)" ;
chromosome1 GeneDB mRNA 2658044 2661022 . - . mRNA SPAC4F8.11 ; db_xref "SPD:29/29C10" ; systematic_id "SPAC4F8.11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOL138C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human WDR24 ortholog; date=20100718" ; colour "10" ; gene "SPAC4F8.11" ; product "WD repeat protein, human WDR24 family" ;
chromosome1 GeneDB mRNA 1174536 1175781 . + . mRNA SPAC22A12.10 ; db_xref "SPD:22/22B04" ; systematic_id "SPAC22A12.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR123W and YNL130C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006646; phosphatidylethanolamine biosynthesis
GO:0004307; ethanolaminephosphotransferase activity
GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane
GO:0004142; diacylglycerol cholinephosphotransferase activity" ; gene "SPAC22A12.10" ; product "diacylglycerol cholinephosphotranferase/ diacylglycerol ethanolaminesphotranferase (predicted)" ; EC_number "2.7.8.1 ||| 2.7.8.2" ;
chromosome1 GeneDB mRNA 1521641 1524778 . + . mRNA SPAC57A7.10c ; systematic_id "SPAC57A7.10c" ; colour "7" ; gene "sec21 ||| SPAC57A7.10c" ; Alias "sec21" ; db_xref "SPD:29/29E05" ; GO "GO:0030126; COPI vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YNL287W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sec21" ; product "coatomer gamma subunit Sec21 (predicted)" ;
chromosome1 GeneDB mRNA 3071584 3072124 . - . mRNA SPAC24C9.13c ; systematic_id "SPAC24C9.13c" ; colour "7" ; gene "mrp10 ||| SPAC24C9.13c" ; Alias "mrp10" ; db_xref "SPD:01/01F10" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CHCH domain; date=19700101 ||| term=orthologous to S. cerevisiae YDL045W-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mrp10" ; product "mitochondrial ribosomal protein subunit Mrp10 (predicted)" ;
chromosome1 GeneDB mRNA 2241748 2242523 . - . mRNA SPAC18G6.14c ; systematic_id "SPAC18G6.14c" ; colour "7" ; gene "rps7 ||| SPAC18G6.14c" ; Alias "rps7" ; db_xref "SPD:06/06D07" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0042254; ribosome biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR096W and YNL096C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps7" ; product "40S ribosomal protein S7 (predicted)" ;
chromosome1 GeneDB mRNA 5247730 5250537 . + . mRNA SPAC14C4.11 ; db_xref "SPD:28/28F08" ; systematic_id "SPAC14C4.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL004W and YPL019C; date=19700101 ||| term=SPX domain protein; date=19700101 ||| term=EXS family protein; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0000329; vacuolar membrane
GO:0006797; polyphosphate metabolism
GO:0007034; vacuolar transport
GO:0042144; vacuole fusion, non-autophagic
GO:0006914; autophagy" ; gene "SPAC14C4.11" ; product "polyphosphate synthetase (predicted)" ;
chromosome1 GeneDB mRNA 2477876 2479951 . + . mRNA SPAC19A8.05c ; systematic_id "SPAC19A8.05c" ; colour "2" ; gene "vps27 ||| SPAC19A8.05c ||| sst4" ; Alias "sst4" ; db_xref "SPD:36/36G01" ; synonym "vps27" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=orthologous to S. cerevisiae YNR006W; date=19700101 ||| term=ENTH/VHS domain protein; date=20080505 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0033565; ESCRT-0 complex
GO:0005628; prospore membrane
GO:0035091; phosphatidylinositol 3-phosphate binding
GO:0043130; ubiquitin binding
GO:0006897; endocytosis
GO:0045324; late endosome to vacuole transport
GO:0031321; prospore formation
GO:0031321; prospore formation
GO:0045053; protein retention in Golgi
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway" ; primary_name "sst4" ; product "sorting receptor for ubiquitinated membrane proteins, ESCRT 0 complex subunit Sst4" ;
chromosome1 GeneDB mRNA 5261936 5265053 . - . mRNA SPAPJ760.02c ; systematic_id "SPAPJ760.02c" ; colour "2" ; gene "app1 ||| SPAPJ760.02c" ; note "divergent repeat containing consensus PVVPE[VA]PSVPQPP[AV][AV] (10)" ; Alias "abp1" ; obsolete_name "app1" ; GO "GO:0003779; actin binding
GO:0030479; actin cortical patch
GO:0030036; actin cytoskeleton organization and biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cofilin/tropomyosin family; date=19700101 ||| term=orthologous to S. cerevisiae YCR088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, repeat containing; date=20100608" ; primary_name "abp1" ; product "cofilin/tropomyosin family, drebrin ortholog Abp1" ;
chromosome1 GeneDB mRNA 248680 250867 . - . mRNA SPAC806.08c ; systematic_id "SPAC806.08c" ; colour "2" ; gene "SPAC806.08c ||| mod21" ; Alias "mod21" ; db_xref "SPD:36/36H04" ; GO "GO:0005816; spindle pole body
GO:0000923; equatorial microtubule organizing center
GO:0000930; gamma-tubulin complex
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human GPC5 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mod21" ; product "gamma tubulin complex subunit Mod21" ; reserved_name "mod21" ;
chromosome1 GeneDB mRNA 3844743 3846645 . - . mRNA SPAC4H3.10c ; systematic_id "SPAC4H3.10c" ; colour "7" ; gene "pyk1 ||| SPAC4H3.10c" ; Alias "pyk1" ; db_xref "SPD:24/24H01" ; GO "GO:0004743; pyruvate kinase activity
GO:0006090; pyruvate metabolism
GO:0006096; glycolysis
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL038W and YOR347C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pyk1" ; product "pyruvate kinase (predicted)" ; EC_number "2.7.1.40" ;
chromosome1 GeneDB mRNA 1319736 1320947 . + . mRNA SPAC6F12.06 ; db_xref "SPD:06/06H12" ; systematic_id "SPAC6F12.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL135C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005094; Rho GDP-dissociation inhibitor activity
GO:0007264; small GTPase mediated signal transduction
GO:0007015; actin filament organization
GO:0005829; cytosol" ; gene "SPAC6F12.06" ; product "Rho GDP dissociation inhibitor Rdi1 (predicted)" ;
chromosome1 GeneDB mRNA 4112086 4113627 . - . mRNA SPAC23A1.18c ; systematic_id "SPAC23A1.18c" ; colour "7" ; gene "SPAC23A1.18c ||| mrp51" ; Alias "mrp51" ; db_xref "SPD:11/11H04" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0070124; mitochondrial translational initiation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL118W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mrp51" ; product "mitochondrial ribosomal protein subunit L51-b (predicted)" ;
chromosome1 GeneDB mRNA 3110201 3113396 . + . mRNA SPAC589.12 ; systematic_id "SPAC589.12" ; colour "7" ; gene "SPAC589.12 ||| SPAC688.01" ; db_xref "SPD:49/49F09" ; synonym "SPAC688.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR017C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; GO "GO:0032153; cell division site
GO:0051286; cell tip
GO:0005887; integral to plasma membrane
GO:0006506; GPI anchor biosynthetic process
GO:0031505; cell wall organization and biogenesis
GO:0060237; regulation of fungal-type cell wall organization and biogenesis" ; product "glycosylceramide biosynthesis protein (predicted)" ;
chromosome1 GeneDB mRNA 58277 59105 . - . mRNA SPAC977.13c ; systematic_id "SPAC977.13c" ; pseudo "_no_value" ; controlled_curation "term=warning, frameshifted; date=20091223" ; colour "13" ; gene "SPAC977.13c" ; product "hydrolase, pseudogene" ; note "4 frameshifts" ;
chromosome1 GeneDB mRNA 1512764 1514711 . - . mRNA SPAC57A7.13 ; db_xref "SPD:46/46A06" ; systematic_id "SPAC57A7.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=G-patch domain; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0008270; zinc ion binding
GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; gene "SPAC57A7.13" ; product "RNA-binding protein, involved in splicing (predicted)" ;
chromosome1 GeneDB mRNA 5276195 5276934 . - . mRNA SPAC2H10.02c ; db_xref "SPD:08/08D12" ; systematic_id "SPAC2H10.02c" ; GO "GO:0070682; proteasome regulatory particle assembly
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PDZ domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; gene "SPAC2H10.02c" ; product "26S proteasome regulatory particle assembly protein (predicted)" ;
chromosome1 GeneDB mRNA 4984444 4986370 . - . mRNA SPAC1952.10c ; db_xref "SPD:19/19C01" ; systematic_id "SPAC1952.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC23H3.04; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005886; plasma membrane" ; gene "SPAC1952.10c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 1192545 1193756 . + . mRNA SPAC4C5.01 ; db_xref "SPD:16/16D10" ; systematic_id "SPAC4C5.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL033W-A; date=19700101 ||| term=haloacid dehalogenase-like hydrolase; date=20080529 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC4C5.01" ; product "haloacid dehalogenase-like hydrolase" ;
chromosome1 GeneDB mRNA 899536 901902 . - . mRNA SPAC22H12.05c ; db_xref "SPD:46/46F07" ; systematic_id "SPAC22H12.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR001C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPAC22H12.05c" ; product "fasciclin domain protein" ;
chromosome1 GeneDB mRNA 506543 507496 . + . mRNA SPAC227.06 ; db_xref "SPD:09/09B06" ; systematic_id "SPAC227.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Yip1 family; date=19700101 ||| term=orthologous to S. cerevisiae YGL161C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0016192; vesicle-mediated transport
GO:0005794; Golgi apparatus
GO:0017137; Rab GTPase binding" ; gene "SPAC227.06" ; product "Rab GTPase binding (predicted)" ;
chromosome1 GeneDB mRNA 739167 746099 . - . mRNA SPAC22G7.06c ; systematic_id "SPAC22G7.06c" ; colour "2" ; gene "ura1 ||| SPAC22G7.06c" ; Alias "ura1" ; db_xref "KEGG:MAP00240; ||| KEGG:MAP00251; ||| KEGG:MAP00252; ||| SPD:34/34C07" ; GO "GO:0004070; aspartate carbamoyltransferase activity
GO:0004088; carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0004151; dihydroorotase activity
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0006541; glutamine metabolic process
GO:0003922; GMP synthase (glutamine-hydrolyzing) activity
GO:0000050; urea cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hyperammonemia; date=20060725 ||| term=orthologous to S. cerevisiae YJL130C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target of UTP; qualifier=inhibited_by; db_xref=PMID:8590465; date=20090223 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ura1" ; product "carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate carbamoyltransferase Ura1" ; EC_number "6.3.5.5 ||| 2.1.3.2 ||| 3.5.2.3" ;
chromosome1 GeneDB mRNA 1166615 1169587 . - . mRNA SPAC22A12.07c ; systematic_id "SPAC22A12.07c" ; colour "2" ; db_xref "SPD:47/47B01" ; Alias "ogm1" ; synonym "oma1" ; GO "GO:0004169; dolichyl-phosphate-mannose-protein mannosyltransferase activity
GO:0035269; protein amino acid O-linked mannosylation
GO:0035269; protein amino acid O-linked mannosylation
GO:0005789; endoplasmic reticulum membrane
GO:0000752; agglutination during conjugation with cellular fusion
GO:0012505; endomembrane system
GO:0031502; dolichyl-phosphate-mannose-protein mannosyltransferase complex
GO:0046982; protein heterodimerization activity
GO:0000032; cell wall mannoprotein biosynthesis
GO:0071937; barrier septum formation involved in cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PMT family; date=19700101 ||| term=PMT1 subfamily; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15809069; date=19700101 ||| term=orthologous to S. cerevisiae YDL095W and YDL093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, O-glycoside mannosyltransferase; date=20100126 ||| term=target is Wsc1; db_xref=PMID:15948957; date=20100823" ; primary_name "ogm1" ; product "protein O-mannosyltransferase Ogm1" ; EC_number "2.4.1.109" ;
chromosome1 GeneDB mRNA 4795357 4796290 . + . mRNA SPAC22F8.06 ; systematic_id "SPAC22F8.06" ; colour "2" ; gene "pam1 ||| SPAC22F8.06" ; Alias "pam1" ; db_xref "SPD:42/42H07" ; GO "GO:0005634; nucleus
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "pam1" ; product "20S proteasome component beta 6" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB mRNA 4001704 4004069 . + . mRNA SPAC27E2.01 ; db_xref "SPD:26/26A07" ; systematic_id "SPAC27E2.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0009986; cell surface
GO:0004556; alpha-amylase activity
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; gene "SPAC27E2.01" ; product "alpha-amylase homolog (predicted)" ; EC_number "3.2.1.1" ;
chromosome1 GeneDB mRNA 2998998 2999843 . + . mRNA SPAC31G5.08 ; systematic_id "SPAC31G5.08" ; colour "2" ; gene "ups1 ||| ups ||| SPAC31G5.08" ; Alias "ups1" ; db_xref "SPD:31/31H07" ; synonym "ups" ; GO "GO:0004852; uroporphyrinogen-III synthase activity
GO:0006783; heme biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060725 ||| term=orthologous to S. cerevisiae YOR278W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, alternative transcripts, alternative polyadenylation; db_xref=EMBL:AB084886; date=20100606" ; primary_name "ups1" ; product "uroporphyrinogen-III synthase Ups1" ; EC_number "4.2.1.75" ;
chromosome1 GeneDB mRNA 2770704 2773440 . - . mRNA SPAC1805.01c ; systematic_id "SPAC1805.01c" ; colour "7" ; gene "SPAPJ736.02c ||| SPAC1805.01c ||| ppk6" ; Alias "ppk6" ; db_xref "SPD:29/29B06" ; synonym "SPAPJ736.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YOL045W and YAL017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0045719; negative regulation of 1,6-beta-glucan biosynthetic process
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "ppk6" ; product "serine/threonine protein kinase Ppk6 (predicted)" ;
chromosome1 GeneDB mRNA 1852627 1854432 . + . mRNA SPAC1399.01c ; db_xref "SPD:49/49C09" ; systematic_id "SPAC1399.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; colour "7" ; gene "SPAC1399.01c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 2155405 2156507 . - . mRNA SPAC23C11.13c ; systematic_id "SPAC23C11.13c" ; colour "7" ; gene "hpt1 ||| SPAC23C11.13c" ; Alias "hpt1" ; db_xref "SPD:12/12C02" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004422; hypoxanthine phosphoribosyltransferase activity
GO:0032261; purine nucleoside salvage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Lesch-Nyhan syndrome and Kelley-Seegmiller syndrome; date=20060821 ||| term=orthologous to S. cerevisiae YDR399W and YJR133W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hpt1" ; product "xanthine phosphoribosyltransferase (predicted)" ; EC_number "2.4.2.8" ;
chromosome1 GeneDB mRNA 1591873 1593083 . - . mRNA SPAC23H4.09 ; systematic_id "SPAC23H4.09" ; colour "10" ; gene "cdb4 ||| SPAC23H4.09" ; Alias "cdb4" ; db_xref "SPD:18/18B01" ; GO "GO:0008237; metallopeptidase
GO:0003677; DNA binding
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human PA2G4 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cdb4" ; product "curved DNA-binding protein Cdb4, peptidase family" ;
chromosome1 GeneDB mRNA 1036639 1038192 . - . mRNA SPAC23C4.05c ; db_xref "SPD:20/20H06" ; systematic_id "SPAC23C4.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML128C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC23C4.05c" ; product "LEA domain protein" ;
chromosome1 GeneDB mRNA 194119 195626 . - . mRNA SPAC13G6.11c ; systematic_id "SPAC13G6.11c" ; colour "7" ; gene "erg12 ||| SPAC13G6.11c" ; Alias "erg12" ; db_xref "SPD:44/44G04" ; GO "GO:0006696; ergosterol biosynthesis
GO:0004496; mevalonate kinase activity
GO:0042803; protein homodimerization activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, mevalonicaciduria; date=20060724 ||| term=orthologous to S. cerevisiae YMR208W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "erg12" ; product "mevalonate kinase Erg12 (predicted)" ; EC_number "2.7.1.36" ; reserved_name "erg12" ;
chromosome1 GeneDB mRNA 3858268 3861679 . + . mRNA SPAC1071.02 ; db_xref "SPD:30/30C05" ; systematic_id "SPAC1071.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=20070403 ||| term=orthologous to S. cerevisiae YIL128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human MMS19L ortholog; date=20110113" ; colour "7" ; GO "GO:0006289; nucleotide-excision repair
GO:0006366; transcription from RNA polymerase II promoter
GO:0005654; nucleoplasm" ; gene "SPAC1071.02" ; product "TFIIH regulator (predicted)" ;
chromosome1 GeneDB mRNA 1283105 1284428 . + . mRNA SPAPB17E12.11 ; systematic_id "SPAPB17E12.11" ; colour "7" ; gene "ost3 ||| SPAPB17E12.11" ; Alias "ost3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR085W and YML019W; date=19700101 ||| term=human TUSC3 ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=thioredoxin family; date=20081111" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation
GO:0004579; dolichyl-diphosphooligosaccharide- protein glycotransferase activity" ; primary_name "ost3" ; product "oligosaccharyltransferase gamma subunit Ost3 (predicted)" ; EC_number "2.4.1.119" ;
chromosome1 GeneDB mRNA 548768 550726 . - . mRNA SPAC2F7.09c ; db_xref "SPD:23/23G10" ; systematic_id "SPAC2F7.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR205C; date=20081110 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618 ||| term=species distribution, conserved in Vertebrates; date=20090618 ||| term=species distribution, conserved in Metazoa; date=20090618 ||| term=species distribution, conserved in Eukaryotes only; date=20090618 ||| term=human c4orf14 ortholog; date=20100821 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0005739; mitochondrion" ; colour "10" ; product "mitochondrial GTPase related protein (prediected)" ;
chromosome1 GeneDB mRNA 1115961 1118412 . - . mRNA SPAC30D11.03 ; systematic_id "SPAC30D11.03" ; colour "7" ; gene "drs1 ||| SPAC30D11.03 ||| ddx27" ; Alias "ddx27" ; db_xref "SPD:38/38C09" ; synonym "drs1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YLL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005730; nucleolus
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0003723; RNA binding
GO:0006364; rRNA processing" ; primary_name "ddx27" ; product "ATP-dependent RNA helicase Ddx27/Drs1 (predicted)" ;
chromosome1 GeneDB mRNA 2288395 2289990 . - . mRNA SPAC4G9.20c ; db_xref "SPD:14/14H11" ; systematic_id "SPAC4G9.20c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YPR058W and YBR104W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0005215; transporter activity" ; gene "SPAC4G9.20c" ; product "mitochondrial carrier with solute carrier repeats (predicted)" ; note "may use upstream Met with alternative intron" ;
chromosome1 GeneDB mRNA 4117287 4119188 . - . mRNA SPAC26H5.02c ; db_xref "SPD:26/26A03" ; systematic_id "SPAC26H5.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YNL218W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; attribution=pers. comm. S. MacNeill; date=20050419 ||| term=human WRNIP ortholog; date=20100820 ||| term=modification, ubiquitinated; evidence=ISS; date=20100820 ||| term=modification, sumoylated; evidence=ISS; date=20100820" ; colour "7" ; GO "GO:0043142; single-stranded DNA-dependent ATPase activity
GO:0005634; nucleus
GO:0033567; DNA replication, Okazaki fragment processing
GO:0000731; DNA synthesis involved in DNA repair" ; gene "SPAC26H5.02c" ; product "DNA replication ATPase (predicted)" ;
chromosome1 GeneDB mRNA 208955 211275 . - . mRNA SPAC24B11.07c ; db_xref "SPD:35/35C01" ; systematic_id "SPAC24B11.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR251W and YPL032C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPAC24B11.07c" ; product "oxidoreductase (predicted)" ;
chromosome1 GeneDB mRNA 1680205 1681471 . + . mRNA SPAC343.18 ; systematic_id "SPAC343.18" ; colour "2" ; gene "SPAC343.18 ||| rfp2" ; Alias "rfp2" ; db_xref "SPD:42/42H04" ; GO "GO:0033768; SUMO-targeted ubiquitin ligase complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006281; DNA repair
GO:0033234; negative regulation of protein sumoylation
GO:0033234; negative regulation of protein sumoylation
GO:0007346; regulation of mitotic cell cycle
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDL013W; date=20070716 ||| term=human RNF4 family; db_xref=PMID:17502373; date=20070716 ||| term=SUMO interaction motif; db_xref=PMID:17762865; date=20071123 ||| term=complementation, functionally complemented by human RNF4; db_xref=PMID:17762865; cv=complementation; date=20071123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rfp2" ; product "SUMO-targeted ubiquitin-protein ligase subunit Rfp2" ;
chromosome1 GeneDB mRNA 3356720 3357817 . + . mRNA SPAC26A3.11 ; db_xref "SPD:15/15B10" ; systematic_id "SPAC26A3.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR351C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0016810; hydrolase activity, acting on carbon- nitrogen (but not peptide) bonds" ; gene "SPAC26A3.11" ; product "amidohydrolase" ;
chromosome1 GeneDB mRNA 3053472 3059282 . - . mRNA SPAC24C9.07c ; systematic_id "SPAC24C9.07c" ; colour "2" ; db_xref "SPD:39/39E08" ; Alias "bgs2" ; synonym "meu21 ||| pgs2" ; GO "GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0030476; spore wall assembly (sensu Fungi)
GO:0000148; 1,3-beta-glucan synthase complex
GO:0003843; 1,3-beta-glucan synthase activity
GO:0005628; prospore membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061117 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:11069657; date=19700101 ||| term=orthologous to S. cerevisiae YLR342W and YGR032W and YMR306W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101" ; primary_name "bgs2" ; product "1,3-beta-glucan synthase subunit Bgs2" ; EC_number "2.4.1.34" ;
chromosome1 GeneDB mRNA 5414984 5416193 . + . mRNA SPAC29B12.04 ; systematic_id "SPAC29B12.04" ; colour "2" ; gene "snz1 ||| SPAC29B12.04" ; private "vitamin biosynthetic process hardwired for Boolean" ; Alias "snz1" ; db_xref "SPD:12/12B02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR096W and YFL059W and YNL333W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0008615; pyridoxine biosynthesis
GO:0008615; pyridoxine biosynthesis" ; primary_name "snz1" ; product "pyridoxine biosynthesis protein" ;
chromosome1 GeneDB mRNA 5375602 5377699 . + . mRNA SPAC4D7.13 ; systematic_id "SPAC4D7.13" ; colour "2" ; gene "usp104 ||| prp40 ||| SPAC4D7.13" ; Alias "usp104" ; db_xref "SPD:27/27G08" ; synonym "prp40" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=orthologous to S. cerevisiae YKL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0003723; RNA binding
GO:0000243; commitment complex
GO:0005685; snRNP U1
GO:0000395; nuclear mRNA 5'-splice site recognition" ; primary_name "usp104" ; product "U1 snRNP-associated protein Usp104" ;
chromosome1 GeneDB mRNA 2853647 2853919 . - . mRNA SPAC3F10.18c ; systematic_id "SPAC3F10.18c" ; colour "7" ; gene "rpl4102 ||| rpl41-2 ||| rpl41 ||| SPAC8F11.01c ||| SPAC3F10.18c" ; Alias "rpl4102" ; db_xref "SPD:31/31C01" ; synonym "rpl41-2 ||| rpl41 ||| SPAC8F11.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL184C and YDL133C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl4102" ; product "60S ribosomal protein L41 (predicted)" ;
chromosome1 GeneDB mRNA 1790537 1791278 . + . mRNA SPAC1610.01 ; db_xref "SPD:07/07E07" ; systematic_id "SPAC1610.01" ; synonym "SPAC17A5.17" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 4546865 4548841 . - . mRNA SPAC637.05c ; systematic_id "SPAC637.05c" ; colour "2" ; gene "vma2 ||| SPAC637.05c" ; Alias "vma2" ; db_xref "SPD:33/33D05" ; GO "GO:0000221; hydrogen-transporting ATPase V1 domain
GO:0046961; hydrogen ion transporting ATPase activity, rotational mechanism
GO:0007035; vacuolar acidification
GO:0015991; ATP hydrolysis coupled proton transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, renal tubular acidosis; date=20061010 ||| term=disease associated, deafness; date=20080105 ||| term=orthologous to S. cerevisiae YBR127C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "vma2" ; product "V-type ATPase V1 subunit B" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB mRNA 2794057 2794781 . - . mRNA SPAC1805.12c ; systematic_id "SPAC1805.12c" ; colour "2" ; gene "uep1 ||| ubi2 ||| SPAC1805.12c" ; Alias "uep1" ; db_xref "SPD:51/51A12" ; synonym "ubi2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ribosomal-ubiquitin fusion protein; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL148W and YKR094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis and assembly
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; protein biosynthesis" ; primary_name "uep1" ; product "ribosomal-ubiquitin fusion protein Ubi2" ;
chromosome1 GeneDB mRNA 2788022 2788718 . + . mRNA SPAC1805.08 ; systematic_id "SPAC1805.08" ; colour "2" ; gene "dlc1 ||| SPAC1805.08" ; Alias "dlc1" ; db_xref "SPD:05/05H04" ; GO "GO:0030989; horsetail nuclear movement
GO:0000235; astral microtubule
GO:0000742; karyogamy during conjugation with cellular fusion
GO:0007131; meiotic recombination
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0030286; dynein complex
GO:0030981; cortical microtubule cytoskeleton
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER071C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dlc1" ; product "dynein light chain Dlc1" ;
chromosome1 GeneDB mRNA 2147100 2150190 . + . mRNA SPAC23C11.09 ; systematic_id "SPAC23C11.09" ; colour "7" ; gene "SPAC23C11.09 ||| ars1 ||| ala1" ; Alias "ala1" ; db_xref "KEGG:MAP00252; ||| KEGG:MAP00970; ||| SPD:29/29F10" ; synonym "ars1" ; GO "GO:0006419; alanyl-tRNA aminoacylation
GO:0004813; alanine-tRNA ligase activity
GO:0005737; cytoplasm
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR335C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ala1" ; product "mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted)" ; EC_number "6.1.1.7" ;
chromosome1 GeneDB mRNA 1309726 1313429 . + . mRNA SPAC6F12.02 ; systematic_id "SPAC6F12.02" ; colour "2" ; gene "rst2 ||| SPAC6F12.02" ; Alias "rst2" ; db_xref "SPD:35/35D09" ; GO "GO:0031670; cellular response to nutrient
GO:0006111; regulation of gluconeogenesis
GO:0005634; nucleus
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0005515; protein binding
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0051039; positive regulation of transcription, meiotic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=gene expression, transcriptionally regulates ste11; qualifier=activates; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulates fbp1; qualifier=activates; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulates rsv1; qualifier=activates; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDR216W and YML081W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; evidence=IDA; qualifier=in_vitro; db_xref=PMID:11739717; date=20100826 ||| term=target of Pka1; qualifier=phosphorylated_by|in_vitro; db_xref=PMID:11739717; date=20100826 ||| term=DNA binding specificity, binds STREP motif; db_xref=PMID:11739717; date=20100826" ; primary_name "rst2" ; product "transcription factor Rst2" ;
chromosome1 GeneDB mRNA 2089304 2091278 . + . mRNA SPAC3C7.12 ; systematic_id "SPAC3C7.12" ; colour "2" ; gene "tip1 ||| noc1 ||| SPAC3C7.12" ; Alias "tip1" ; db_xref "SPD:44/44D06" ; synonym "noc1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, plus end tracking protein; cv=m_f_g; date=20060411 ||| term=orthologous to S. cerevisiae YCL029C; date=19700101 ||| term=gene expression, expression induced by heat shock; db_xref=PMID:9714741; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, filament morphology aberrant; qualifier=deletion; db_xref=PMID:19542312; date=20090706" ; GO "GO:0051285; cell cortex of cell tip
GO:0015630; microtubule cytoskleton
GO:0051010; microtubule plus-end binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0030010; establishment of cell polarity (sensu Fungi)
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0046785; microtubule polymerization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030437; sporulation (sensu Fungi)
GO:0010570; regulation of filamentous growth
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "tip1" ; product "CLIP170 family protein Tip1" ;
chromosome1 GeneDB mRNA 5055175 5056278 . + . mRNA SPAC22E12.18 ; db_xref "SPD:16/16A06" ; systematic_id "SPAC22E12.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR287C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005737; cytoplasm" ; gene "SPAC22E12.18" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 5336723 5340639 . - . mRNA SPAP8A3.12c ; Alias "tpp2" ; systematic_id "SPAP8A3.12c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TPP II homolog; date=20090108 ||| term=phenotype, no obvious phenotype; cv=phenotype; db_xref=PMID:aaaaaaaa; date=20090216" ; GO "GO:0005829; cytosol
GO:0008240; tripeptidyl-peptidase" ; gene "tpp2 ||| SPAP8A3.12c" ; primary_name "tpp2" ; product "tripeptidyl-peptidase II Tpp2" ; EC_number "3.4.14.10" ;
chromosome1 GeneDB mRNA 1411695 1415162 . - . mRNA SPAC20G8.08c ; systematic_id "SPAC20G8.08c" ; colour "7" ; gene "fft1 ||| SPAC20G8.08c" ; Alias "fft1" ; db_xref "SPD:47/47F12" ; GO "GO:0016585; chromatin remodeling complex
GO:0006338; chromatin remodeling
GO:0005634; nucleus
GO:0004003; ATP-dependent DNA helicase activity
GO:0005524; ATP binding
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=similar to S. pombe SPCC1235.05C and SPAC25A8.01C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fft1" ; product "fun thirty related protein Fft1 (predicted)" ; reserved_name "fft1" ;
chromosome1 GeneDB mRNA 3790667 3791710 . + . mRNA SPAP4C9.02 ; systematic_id "SPAP4C9.02" ; colour "7" ; gene "SPAP4C9.02 ||| emc1" ; Alias "emc5" ; db_xref "PMID:18488015" ; obsolete_name "SPNG750-51 ||| SPNCRNA.235" ; controlled_curation "term=orthologous to S. cerevisiae YIL027C; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Metazoa; date=20091228 ||| term=species distribution, conserved in Vertebrates; date=20091228 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; GO "GO:0034975; protein folding in the endoplasmic reticulum
GO:0072546; ER membrane protein complex" ; primary_name "emc5" ; product "ER membrane protein complex subunit 5 (predicted)" ;
chromosome1 GeneDB mRNA 3288629 3292753 . - . mRNA SPAPB1E7.04c ; systematic_id "SPAPB1E7.04c" ; colour "7" ; GO "GO:0009986; cell surface
GO:0009277; cell wall (sensu Fungi)
GO:0004568; chitinase activity
GO:0000920; cell separation during cytokinesis
GO:0034232; spore wall chitin catabolic process
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR286C and YDR371W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; gene "SPAPB1E7.04c" ; product "chitinase (predicted)" ; EC_number "3.2.1.14" ;
chromosome1 GeneDB mRNA 3039688 3040468 . - . mRNA SPAC24C9.02c ; db_xref "SPD:09/09A03" ; systematic_id "SPAC24C9.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0004408; holocytochrome-c synthase activity
GO:0018063; cytochrome c-heme linkage" ; gene "SPAC24C9.02c" ; product "cytochrome c1 heme lyase (predicted)" ;
chromosome1 GeneDB mRNA 641885 643512 . - . mRNA SPAC1D4.03c ; systematic_id "SPAC1D4.03c" ; colour "7" ; gene "aut12 ||| SPAC1D4.03c" ; Alias "aut12" ; db_xref "SPD:45/45D11" ; GO "GO:0000329; vacuolar membrane (sensu Fungi)
GO:0005829; cytosol
GO:0006623; protein targeting to vacuole
GO:0006914; autophagy" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "aut12" ; product "autophagy associated protein Aut12 (predicted)" ;
chromosome1 GeneDB mRNA 4763069 4764112 . + . mRNA SPAC1782.04 ; systematic_id "SPAC1782.04" ; colour "7" ; gene "cox24 ||| SPAC1782.04" ; Alias "cox24" ; db_xref "SPD:06/06A06" ; GO "GO:0005739; mitochondrion
GO:0006397; mRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cox24" ; product "mitochondrial mRNA processing protein Cox24 (predicted)" ;
chromosome1 GeneDB mRNA 879147 880452 . - . mRNA SPAC23G3.07c ; systematic_id "SPAC23G3.07c" ; colour "2" ; gene "snf30 ||| SPAC23G3.07c" ; note "candidate ortholog for S. cerevisiae YDR073W (SNF11)" ; Alias "snf30" ; db_xref "SPD:32/32B10" ; GO "GO:0000790; nuclear chromatin
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0016514; SWI/SNF complex
GO:0010551; regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=20071106 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "snf30" ; product "SWI/SNF complex subunit Snf30" ; reserved_name "snf30" ;
chromosome1 GeneDB mRNA 844948 846142 . + . mRNA SPAC521.03 ; db_xref "SPD:43/43B12" ; systematic_id "SPAC521.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR226C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPAC521.03" ; product "short chain dehydrogenase (predicted)" ;
chromosome1 GeneDB mRNA 4635526 4636846 . + . mRNA SPAC30C2.02 ; systematic_id "SPAC30C2.02" ; colour "2" ; gene "mmd1 ||| SPAC30C2.02" ; Alias "mmd1" ; db_xref "SPD:13/13E08" ; GO "GO:0005737; cytoplasm
GO:0019135; deoxyhypusine monooxygenase activity
GO:0008612; hypusine biosynthesis from peptidyl- lysine
GO:0007018; microtubule-based movement
GO:0048311; mitochondrion distribution" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14767070; date=20061127 ||| term=HEAT repeat; cv=protein_family; date=20061127 ||| term=name description, mitochondrial morphology and distribution; cv=name_description; date=20061127 ||| term=orthologous to S. cerevisiae YJR070C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=complementation, functionally complemented by S. cerevisiae YJR070C; db_xref=PMID:14767070; date=20100923" ; primary_name "mmd1" ; product "deoxyhypusine hydroxylase (predicted)" ;
chromosome1 GeneDB mRNA 932535 933965 . - . mRNA SPAC1687.16c ; systematic_id "SPAC1687.16c" ; colour "2" ; gene "SPAC1687.16c" ; Alias "erg31" ; db_xref "SPD:12/12D08" ; synonym "erg3" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0000248; C-5 sterol desaturase activity
GO:0005506; iron ion binding
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthetic process
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane
GO:0006623; protein targeting to vacuole" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=orthologous to S. cerevisiae YLR056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "erg31" ; product "C-5 sterol desaturase Erg31" ; EC_number "1.14.21.6" ;
chromosome1 GeneDB mRNA 2947519 2949992 . + . mRNA SPAPB24D3.01 ; systematic_id "SPAPB24D3.01" ; colour "7" ; gene "SPAPB2C8.02 ||| SPAPB24D3.01" ; Alias "SPAPB2C8.02" ; synonym "SPAPB2C8.02" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPBC1773.16C and SPAC11D3.07c and SPBC1773.12; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "SPAPB2C8.02" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB mRNA 3316899 3317528 . + . mRNA SPAPB1E7.10 ; Alias "rpc17" ; systematic_id "SPAPB1E7.10" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL011C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; DNA-directed RNA polymerase III complex
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003899; DNA-directed RNA polymerase activity" ; gene "rpc17 ||| SPAPB1E7.10" ; primary_name "rpc17" ; product "DNA-directed RNA polymerase III complex subunit Rpc17" ;
chromosome1 GeneDB mRNA 2512905 2514941 . - . mRNA SPAC23H3.11c ; db_xref "SPD:26/26E03" ; systematic_id "SPAC23H3.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR143W and YPR159W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0015926; glucosidase activity
GO:0006078; 1,6-beta-glucan biosynthesis
GO:0031505; cell wall organization and biogenesis
GO:0016021; integral to membrane" ; gene "SPAC23H3.11c" ; product "glucosidase (predicted)" ;
chromosome1 GeneDB mRNA 3443944 3445981 . + . mRNA SPAC3A11.12c ; systematic_id "SPAC3A11.12c" ; colour "7" ; gene "rpt5 ||| pam2 ||| tbp1 ||| SPAC3A11.12c" ; Alias "rpt5" ; db_xref "SPD:24/24D01" ; obsolete_name "SPAC3H5.01c ||| tbp1" ; synonym "pam2 ||| tbp1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YOR117W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0004175; endopeptidase activity
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; primary_name "rpt5" ; product "19S proteasome regulatory subunit Rpt5 (predicted)" ;
chromosome1 GeneDB mRNA 3145214 3145728 . + . mRNA SPAC3G9.16c ; systematic_id "SPAC3G9.16c" ; colour "7" ; gene "bet5 ||| SPAC688.15 ||| SPAC3G9.16c" ; Alias "bet5" ; db_xref "SPD:05/05A10" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030008; TRAPP complex
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML077W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bet5" ; product "TRAPP complex subunit Bet5 (predicted)" ;
chromosome1 GeneDB mRNA 2416235 2416706 . + . mRNA SPAC6B12.18 ; systematic_id "SPAC6B12.18" ; colour "7" ; db_xref "EMBL:AB084867 ||| PMID:12597277" ; Alias "gon7" ; synonym "prl55 ||| SPNCRNA.55" ; GO "GO:0000408; EKC/KEOPS complex
GO:0000790; nuclear chromatin
GO:0006357; regulation of transcription form RNA polymerase II
GO:0000723; telomere maintenance" ; controlled_curation "term=species distribution, conserved in Fungi; date=20091022 ||| term=species distribution, conserved in Fungi only; date=20091022 ||| term=orthologous to S. cerevisiae YJL184W; date=20091022 ||| term=warning, new gene; date=20100909" ; primary_name "gon7" ; product "EKC/KEOPS complex subunit Gon7 (predicted)" ;
chromosome1 GeneDB mRNA 3325263 3326138 . - . mRNA SPAC2E1P5.02c ; systematic_id "SPAC2E1P5.02c" ; colour "10" ; gene "SPAC2E1P5.02c ||| mug109" ; Alias "mug109" ; db_xref "SPD:04/04F11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; GO "GO:0017137; Rab GTPase binding
GO:0016192; vesicle-mediated transport" ; primary_name "mug109" ; product "Rab GTPase binding protein upregulated in meiosis II (predicted)" ;
chromosome1 GeneDB mRNA 1576697 1577912 . + . mRNA SPAC23H4.17c ; systematic_id "SPAC23H4.17c" ; colour "2" ; db_xref "SPD:16/16C01" ; Alias "srb10" ; synonym "prk1 ||| cdk8" ; GO "GO:0016592; Srb-mediator complex
GO:0005524; ATP binding
GO:0004693; cyclin-dependent protein kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0032569; specific transcription from RNA polymerase II promoter
; RNA polymerase II CTD terminal phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL042C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=gene expression, transcriptionally represses genes involved in cell surface adhesion; db_xref=PMID:18310102; cv=gene_ex; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "srb10" ; product "cyclin-dependent protein Srb mediator subunit kinase Srb10" ;
chromosome1 GeneDB mRNA 4543838 4546811 . + . mRNA SPAC637.04 ; db_xref "SPD:38/38H10" ; systematic_id "SPAC637.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006897; endocytosis
GO:0005737; cytoplasm
GO:0006886; intracellular protein transport" ; gene "SPAC637.04" ; product "cargo-transport protein Ypp1 (predicted)" ;
chromosome1 GeneDB mRNA 815442 817916 . - . mRNA SPAC2G11.05c ; db_xref "SPD:46/46E08" ; systematic_id "SPAC2G11.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR275C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0030437; sporulation (sensu Fungi)
GO:0005768; endosome
GO:0009268; response to pH
GO:0016485; protein processing" ; gene "SPAC2G11.05c" ; product "BRO1 domain protein (predicted)" ;
chromosome1 GeneDB mRNA 3081002 3082320 . + . mRNA SPAC16A10.02 ; systematic_id "SPAC16A10.02" ; colour "2" ; gene "SPAC16A10.02 ||| sub1" ; Alias "sub1" ; db_xref "SPD:04/04B05" ; GO "GO:0005634; nucleus
GO:0003690; double-stranded DNA binding
GO:0003697; single-stranded DNA binding
GO:0003713; transcription coactivator activity
GO:0060261; positive regulation of transcription initiation from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sub1" ; product "transcription coactivator PC4" ;
chromosome1 GeneDB mRNA 4089813 4092079 . - . mRNA SPAC23A1.06c ; systematic_id "SPAC23A1.06c" ; colour "2" ; db_xref "SPD:26/26G08" ; Alias "cmk2" ; synonym "mkp2" ; GO "GO:0030428; cell septum
GO:0005737; cytoplasm
GO:0005509; calcium ion binding
GO:0004683; calcium- and calmodulin-dependent protein kinase activity
GO:0005516; calmodulin binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0034599; cellular response to oxidative stress
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarityh
GO:0031098; stress-activated protein kinase signaling pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12135745; date=19700101 ||| term=orthologous to S. cerevisiae YGL158W and YLR248W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; evidence=IDA: db_xref=PMID:11886858; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Sty1; qualifier=phosphorylated_by; residue=THR411; db_xref=PMID:11886858; date=20100122" ; primary_name "cmk2" ; product "MAPK-activated protein kinase Cmk2" ; EC_number "2.7.11.17" ;
chromosome1 GeneDB mRNA 2018369 2019349 . + . mRNA SPAC17H9.08 ; db_xref "SPD:14/14B03" ; systematic_id "SPAC17H9.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Graves' disease; date=19700101 ||| term=orthologous to S. cerevisiae YHR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=19700101" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0035349; coenzyme A transmembrane transport
GO:0015228; coenzyme A transporter activity
GO:0006839; mitochondrial transport" ; gene "SPAC17H9.08" ; product "mitochondrial coenzyme A transporter (predicted)" ;
chromosome1 GeneDB mRNA 4822906 4824831 . - . mRNA SPAC20G4.05c ; db_xref "SPD:35/35D12" ; systematic_id "SPAC20G4.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL222W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC20G4.05c" ; product "UPF0061 family protein" ;
chromosome1 GeneDB mRNA 4807561 4810699 . + . mRNA SPAC22F8.11 ; systematic_id "SPAC22F8.11" ; colour "2" ; gene "plc1 ||| SPAC22F8.11" ; Alias "plc1" ; db_xref "SPD:47/47B02" ; GO "GO:0005634; nucleus
GO:0005509; calcium ion binding
GO:0004435; phosphoinositide phospholipase C activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0048017; inositol lipid-mediated signaling
GO:0019220; regulation of phosphate metabolism
GO:0034644; cellular response to UV
GO:0007165; signal transduction
GO:0044242; cellular lipid catabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=C2 domain; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL268W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "plc1" ; product "phosphoinositide phospholipase C Plc1" ; EC_number "3.1.4.11" ;
chromosome1 GeneDB mRNA 1267830 1270260 . - . mRNA SPAC1420.04c ; systematic_id "SPAC1420.04c" ; colour "7" ; gene "cox1101 ||| SPAC1420.04c ||| SPAPB17E12.01c ||| cox11" ; note "pre-rsm22-cox11" ; Alias "cox1101" ; db_xref "SPD:51/51A06" ; synonym "cox11 ||| SPAPB17E12.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, proteolytic cleavage; db_xref=PMID:16835444; residue=549; cv=pt_mod; date=20060825 ||| term=genome organization, tandem fusion protein; db_xref=PMID:16835444; date=20060825 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; db_xref=PMID:16835444; cv=genome_org; date=20060825 ||| term=target of TIM23 translocase; db_xref=PMID:16835444; date=20060825 ||| term=orthologous to S. cerevisiae YPL132W (C-term); date=19700101 ||| term=orthologous to S. cerevisiae YKL155C (N-term); date=19700101" ; GO "GO:0031304; intrinsic to mitochondrial inner membrane
GO:0005759; mitochondrial matrix
GO:0005763; mitochondrial small ribosomal subunit
GO:0005507; copper ion binding
GO:0008168; methyltransferase activity
GO:0008535; cytochrome c oxidase complex assembly
GO:0032543; mitochondrial translation" ; primary_name "cox1101" ; product "fusion cytochrome c oxidase assembly protein Cox1101, mitochondrial ribosomal protein Rsm22 (predicted)" ;
chromosome1 GeneDB mRNA 2433377 2435577 . + . mRNA SPAC6B12.12 ; systematic_id "SPAC6B12.12" ; colour "7" ; gene "tom70 ||| SPAC6B12.12" ; Alias "tom70" ; db_xref "SPD:36/36H11" ; GO "GO:0015450; protein translocase activity
GO:0005742; mitochondrial outer membrane translocase complex
GO:0045039; protein import into mitochondrial inner membrane
GO:0005047; signal recognition particle binding
GO:0008565; protein transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL121C and YHR117W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tom70" ; product "mitochondrial TOM complex subunit Tom70 (predicted)" ;
chromosome1 GeneDB mRNA 2283556 2284216 . - . mRNA SPAC4G9.16c ; systematic_id "SPAC4G9.16c" ; colour "2" ; gene "rpl901 ||| rpl9-1 ||| SPAC4G9.16c" ; Alias "rpl901" ; db_xref "SPD:06/06B01" ; synonym "rpl9-1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL147C and YNL067W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl901" ; product "60S ribosomal protein L9" ;
chromosome1 GeneDB mRNA 2282230 2283556 . + . mRNA SPAC4G9.15 ; db_xref "SPD:17/17H02" ; systematic_id "SPAC4G9.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "7" ; GO "GO:0030497; fatty acid elongation
GO:0045703; ketoreductase activity
GO:0005783; endoplasmic reticulum" ; gene "SPAC4G9.15" ; product "ketoreductase (predicted)" ;
chromosome1 GeneDB mRNA 3627703 3628913 . - . mRNA SPAC1142.02c ; systematic_id "SPAC1142.02c" ; colour "7" ; gene "SPAC17G6.19c ||| SPAC1142.02c" ; Alias "SPAC17G6.19c" ; db_xref "SPD:15/15G10" ; synonym "SPAC17G6.19c" ; GO "GO:0016192; vesicle mediated transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR007C; date=19700101 ||| term=TPR repeat protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "SPAC17G6.19c" ; product "TPR repeat protein, SGT2 family (predicted)" ;
chromosome1 GeneDB mRNA 2124938 2125927 . + . mRNA SPAC20H4.08 ; systematic_id "SPAC20H4.08" ; colour "7" ; gene "SPAC20H4.08" ; obsolete_name "SPAC145.02" ; db_xref "SPD:10/10D06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR043W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0019211; phosphatase activator activity
GO:0033554; cellular response to stress
GO:0007165; signal transduction
GO:0009966; regulation of signal transduction" ; product "phosphatase activator (predicted)" ;
chromosome1 GeneDB mRNA 5117470 5119031 . - . mRNA SPAC29A4.15 ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:44/44C09" ; systematic_id "SPAC29A4.15" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR023W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004828; serine-tRNA ligase activity
GO:0006434; seryl-tRNA aminoacylation" ; gene "SPAC29A4.15" ; product "cytoplasmic serine-tRNA ligase Srs1 (predicted)" ; EC_number "6.1.1.11" ;
chromosome1 GeneDB mRNA 3649425 3650629 . + . mRNA SPAC8C9.05 ; db_xref "SPD:12/12E04" ; systematic_id "SPAC8C9.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL219W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0006412; translation
GO:0019478; D-amino acid catabolism
GO:0016788; hydrolase activity, acting on ester bonds
GO:0005737; cytoplasm
GO:0051499; D-aminoacyl-tRNA deacylase activity" ; gene "SPAC8C9.05" ; product "D-Tyr-tRNA deacylase (predicted)" ;
chromosome1 GeneDB mRNA 1968845 1973467 . + . mRNA SPAC9G1.02 ; systematic_id "SPAC9G1.02" ; colour "2" ; db_xref "SPD:39/39E02" ; Alias "wis4" ; synonym "wak1 ||| wik1" ; GO "GO:0007346; regulation of progression through mitotic cell cycle
GO:0004709; MAP kinase kinase kinase activity
GO:0031098; stress-activated protein kinase signaling pathway
GO:0000165; MAPKKK cascade
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0051403; stress-activated MAPK cascade
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR073C and YNR031C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Wis1; qualifier=activates; db_xref=PMID:17072883; date=20100427" ; primary_name "wis4" ; product "MAP kinase kinase kinase Wis4" ;
chromosome1 GeneDB mRNA 1545348 1545813 . - . mRNA SPAC57A7.15c ; db_xref "PMID:18488015" ; systematic_id "SPAC57A7.15c" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "8" ; gene "SPAC57A7.15c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 218417 221498 . - . mRNA SPAC24B11.10c ; systematic_id "SPAC24B11.10c" ; colour "10" ; gene "chr3 ||| SPAC24B11.10c ||| cfh1" ; db_xref "SPD:29/29D12" ; Alias "chr3" ; synonym "cfh1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SEL1 repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL061C and YDL203C and YER096W; date=19700101 ||| term=name description, Chs Four Homologue; attribution=pers. comm. Henar Montero; date=20091017 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=warning, gene structure may be incorrect; date=20110117 ||| term=warning, possible splicing; date=20110117" ; primary_name "chr3" ; product "chitin synthase regulatory factor-like Chr3 (predicted)" ; reserved_name "chr3" ;
chromosome1 GeneDB mRNA 3863001 3863504 . - . mRNA SPAC1071.04c ; systematic_id "SPAC1071.04c" ; colour "7" ; gene "SPAC1071.04c" ; Alias "spc2" ; db_xref "SPD:42/42B12" ; GO "GO:0005787; signal peptidase complex
GO:0045047; protein targeting to ER
GO:0006465; signal peptide processing" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML055W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spc2" ; product "signal peptidase subunit Spc2 (predicted)" ;
chromosome1 GeneDB mRNA 2529085 2529901 . + . mRNA SPAC25H1.04 ; systematic_id "SPAC25H1.04" ; colour "10" ; gene "SPAC25H1.04 ||| mug105" ; db_xref "SPD:08/08G12" ; Alias "mug105" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0070647; protein modification by small-protein conjugation or removal" ; primary_name "mug105" ; product "ubiquitin-fold modifier-specific protease (predicted)" ;
chromosome1 GeneDB mRNA 4905508 4906394 . - . mRNA SPAC19B12.12c ; systematic_id "SPAC19B12.12c" ; colour "2" ; gene "yip11 ||| yip1 ||| yip1-a ||| SPAC19B12.12c" ; Alias "yip11" ; db_xref "SPD:12/12A03" ; synonym "yip1 ||| yip1-a" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SMN family; date=19700101 ||| term=disease associated, motor neurone disease; date=19700101 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000387; spliceosomal snRNP assembly
GO:0005681; spliceosomal complex" ; primary_name "yip11" ; product "SMN family protein Yip11" ;
chromosome1 GeneDB mRNA 419991 423903 . + . mRNA SPAC31A2.16 ; systematic_id "SPAC31A2.16" ; colour "2" ; gene "gef2 ||| SPAC31A2.16" ; Alias "gef2" ; db_xref "SPD:48/48C09" ; GO "GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0032319; regulation of Rho GTPase activity
GO:0035023; regulation of Rho protein signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14637133; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "gef2" ; product "RhoGEF Gef2" ;
chromosome1 GeneDB mRNA 3601742 3603671 . + . mRNA SPAC17G6.08 ; systematic_id "SPAC17G6.08" ; colour "7" ; gene "pep7 ||| vac1 ||| SPAC17G6.08" ; Alias "pep7" ; db_xref "SPD:25/25H01" ; synonym "vac1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=orthologous to S. cerevisiae YDR323C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0006896; Golgi to vacuole transport
GO:0006904; vesicle docking during exocytosis
GO:0006906; vesicle fusion" ; primary_name "pep7" ; product "prevacuole/endosomal FYVE tethering component Pep7 (predicted)" ;
chromosome1 GeneDB mRNA 2763686 2765433 . - . mRNA SPAC6F6.16c ; systematic_id "SPAC6F6.16c" ; colour "2" ; db_xref "SPD:11/11A11" ; Alias "tpz1" ; synonym "SPAC6F6.18c ||| mug169" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; cv=phenotype; db_xref=PMID:18535244; date=20080609 ||| term=human TPP1 homolog; db_xref=PMID:18535244; date=20080609 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080609 ||| term=OB fold; db_xref=PMID:18535244; date=20080609 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; date=200090806" ; GO "GO:0000781; chromosome,telomeric region
GO:0070187; telosome
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0071573; telosome complex assembly
GO:0016233; telomere end protection" ; primary_name "tpz1" ; product "Tppl homolog Tpz1" ;
chromosome1 GeneDB mRNA 4275060 4275902 . + . mRNA SPAC2C4.08 ; db_xref "SPD:08/08G08" ; systematic_id "SPAC2C4.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL036W and YDR514C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0005634; nucleus" ; gene "SPAC2C4.08" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 2745941 2746658 . - . mRNA SPAC6F6.07c ; systematic_id "SPAC6F6.07c" ; colour "7" ; gene "rps13 ||| SPAC6F6.07c" ; Alias "rps13" ; db_xref "SPD:07/07H12" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR064W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps13" ; product "40S ribosomal protein S13 (predicted)" ;
chromosome1 GeneDB mRNA 3921018 3921711 . + . mRNA SPAC323.08 ; db_xref "SPD:07/07C07" ; systematic_id "SPAC323.08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR145W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000172; ribonuclease MRP complex
GO:0006364; rRNA processing
GO:0006379; mRNA cleavage" ; gene "SPAC323.08" ; product "ribonuclease MRP complex subunit (predicted)" ;
chromosome1 GeneDB mRNA 2331628 2335475 . - . mRNA SPAC6C3.06c ; db_xref "SPD:39/39B06" ; systematic_id "SPAC6C3.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL048W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; colour "7" ; GO "GO:0005388; calcium-transporting ATPase activity
GO:0004012; phospholipid-translocating ATPase activity
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005789; endoplasmic reticulum membrane
GO:0070588; transmembrane calcium ion transport" ; gene "SPAC6C3.06c" ; product "P-type ATPase, calcium transporting (predicted)" ;
chromosome1 GeneDB mRNA 5018104 5018655 . + . mRNA SPAC890.08 ; systematic_id "SPAC890.08" ; colour "7" ; gene "rpl31 ||| SPAC890.08" ; Alias "rpl31" ; db_xref "SPD:04/04B08" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL075W and YLR406C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl31" ; product "60S ribosomal protein L31 (predicted)" ;
chromosome1 GeneDB mRNA 2077140 2078793 . - . mRNA SPAC3C7.07c ; db_xref "SPD:44/44F12" ; systematic_id "SPAC3C7.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004057; arginyltransferase activity
GO:0016598; protein arginylation
GO:0006399; tRNA metabolism" ; gene "SPAC3C7.07c" ; product "arginine-tRNA protein transferase (predicted)" ; EC_number "2.3.2.8" ;
chromosome1 GeneDB mRNA 5080753 5085036 . + . mRNA SPAC1006.06 ; systematic_id "SPAC1006.06" ; colour "2" ; gene "rgf2 ||| SPAC1006.06" ; Alias "rgf2" ; db_xref "SPD:30/30E10" ; GO "GO:0000935; barrier septum
GO:0051285; cell cortex of cell tip
GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0005515; protein binding
GO:0051666; actin cortical patch localization
GO:0009272; fungal-type cell wall biogenesis
GO:0032319; regulation of Rho GTPase activity
GO:0035023; regulation of Rho protein signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16324155; date=20060413 ||| term=pleckstrin homology domain; date=20060413 ||| term=orthologous to S. cerevisiae YGR070W and YLR371W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human ARHGEF12 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "rgf2" ; product "RhoGEF Rgf2" ;
chromosome1 GeneDB mRNA 259611 270885 . + . mRNA SPAC1F5.11c ; systematic_id "SPAC1F5.11c" ; colour "2" ; gene "SPAC1F5.11c ||| tra2" ; note "possibly lacks protein kinase activity ||| not detected in SAGA (pers. comm. Dom Helmlinger)" ; Alias "tra2" ; db_xref "SPD:34/34D08" ; GO "GO:0004428; inositol or phosphatidylinositol kinase activity
GO:0005515; protein binding
GO:0048017; inositol lipid-mediated signaling
GO:0046854; phosphoinositide phosphorylation
GO:0035267; NuA4 histone acetyltransferase complex
GO:0016573; histone acetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR099W; date=19700101 ||| term=TRRAP family protein; db_xref=PMID:18076567; date=20080104 ||| term=phosphoinositide 3-kinase family protein; date=20080104 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TRRAP ortholog; date=20110113" ; primary_name "tra2" ; product "phosphatidylinositol kinase-related protein Tra2" ;
chromosome1 GeneDB mRNA 5075136 5077994 . - . mRNA SPAC1006.04c ; systematic_id "SPAC1006.04c" ; colour "8" ; gene "mcp3 ||| SPAC1006.04c ||| mug7" ; Alias "mcp3" ; db_xref "SPD:29/29F06" ; synonym "mug7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:12161753; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=19700101" ; GO "GO:0007126; meiosis" ; primary_name "mcp3" ; product "sequence orphan" ; reserved_name "mcp3" ;
chromosome1 GeneDB mRNA 3241386 3242370 . - . mRNA SPAC6G9.01c ; db_xref "SPD:43/43B10" ; systematic_id "SPAC6G9.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAC6G9.01c" ; product "conserved protein" ;
chromosome1 GeneDB mRNA 4698773 4699544 . - . mRNA SPAC1834.03c ; systematic_id "SPAC1834.03c" ; colour "2" ; gene "hhf1 ||| h4.1 ||| SPAC1834.03c" ; Alias "hhf1" ; db_xref "SPD:01/01F02" ; synonym "h4.1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR009C and YNL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K20; cv=pt_mod; date=20100311" ; GO "GO:0003677; DNA binding
GO:0006333; chromatin assembly or disassembly
GO:0000788; nuclear nucleosome" ; primary_name "hhf1" ; product "histone H4 h4.1" ;
chromosome1 GeneDB mRNA 2698420 2700128 . - . mRNA SPAC644.14c ; systematic_id "SPAC644.14c" ; colour "2" ; gene "rhp51 ||| rad51 ||| SPAC644.14c" ; Alias "rhp51" ; db_xref "SPD:17/17B11" ; synonym "rad51" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RecA family; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=helix-hairpin-helix;date=19700101 ||| term=orthologous to S. cerevisiae YER095W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, assembly at damage sites is facilitated by Swi5 independently of Rhp57; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, assembly at damage sites is facilitated by Rhp57 independently of Swi5; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, gene conversion, reduced; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, crossover, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, long tract gene conversion, increased; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant produced each recombination class (gene conversion, crossover and long tract gene conversion) at frequencies similar to that of the rhp51delta single mutant; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, increased frequency of long tract gene conversion in the rhp57 delta single mutant was suppressed in the swi5delta rhp57delta double mutant, to a level similar to that observed in the rhp51 mutant; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant showed a repair profile very similar to that to the rhp51deltasingle mutant; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=gene expression, promoter contains DRE element; db_xref=PMID:11073995; date=20091230 ||| term=gene expression, transcriptionally regulated by Deb1; db_xref=PMID:11073995; date=20100303" ; GO "GO:0000794; condensed nuclear chromosome
GO:0030998; linear element
GO:0000790; nuclear chromatin
GO:0005524; ATP binding
GO:0033170; DNA-protein loading ATPase activity
GO:0003691; double-stranded telomeric DNA binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043047; single-stranded telomeric DNA binding
GO:0000724; double-strand break repair via homologous recombination
GO:0007533; mating type switching
GO:0042138; meiotic DNA double-strand break formation
GO:0000711; meiotic DNA repair synthesis
GO:0006311; meiotic gene conversion
GO:0006312; mitotic recombination
GO:0042148; strand invasion
GO:0000723; telomere maintenance" ; primary_name "rhp51" ; product "recombinase Rhp51" ;
chromosome1 GeneDB mRNA 1830685 1831731 . - . mRNA SPAC1002.17c ; systematic_id "SPAC1002.17c" ; colour "7" ; gene "SPAC1002.17c ||| urg2" ; Alias "urg2" ; db_xref "SPD:06/06A05" ; GO "GO:0004845; uracil phosphoribosyltransferase activity
GO:0008655; pyrimidine salvage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR128W; date=19700101 ||| term=name description, Uracil Regulatable Gene; cv=name_description; date=20060912 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "urg2" ; product "uracil phosphoribosyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 2273823 2275417 . + . mRNA SPAC4G9.10 ; systematic_id "SPAC4G9.10" ; colour "2" ; gene "arg3 ||| SPAC4G9.10" ; Alias "arg3" ; db_xref "SPD:14/14C03" ; GO "GO:0042450; arginine biosynthetic process via ornithine
GO:0006591; ornithine metabolism
GO:0005739; mitochondrion
GO:0004585; ornithine carbamoyltransferase activity
GO:0000050; urea cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arg3" ; product "ornithine carbamoyltransferase Arg3" ; EC_number "2.1.3.3" ;
chromosome1 GeneDB mRNA 2902104 2903133 . + . mRNA SPACUNK4.06c ; systematic_id "SPACUNK4.06c" ; colour "2" ; gene "rpb7 ||| SPACUNK4.06c ||| SPAPYUK71.02" ; Alias "rpb7" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:06/06D02" ; synonym "SPAPYUK71.02" ; GO "GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003723; RNA binding
GO:0031123; RNA 3' end processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR404C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpb7" ; product "DNA-directed RNA polymerase complex II subunit Rpb7" ;
chromosome1 GeneDB mRNA 4472557 4474595 . + . mRNA SPAC17C9.16c ; systematic_id "SPAC17C9.16c" ; colour "7" ; gene "SPAC9E9.16 ||| SPAC17C9.16c ||| mfs1" ; Alias "SPAC9E9.16" ; db_xref "SPD:34/34F06" ; synonym "SPAC9E9.16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005886; plasma membrane
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport" ; primary_name "SPAC9E9.16" ; product "MFS family transmembrane transporter Mfs1 (predicted)" ; reserved_name "mfs1" ;
chromosome1 GeneDB mRNA 3615585 3617100 . + . mRNA SPAC17G6.13 ; systematic_id "SPAC17G6.13" ; colour "8" ; gene "SPAC17G6.13" ; Alias "slt1" ; db_xref "SPD:22/22F04" ; GO "GO:0007126; meiosis
GO:0034605; cellular response to heat" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "slt1" ; product "sequence orphan Slt1" ;
chromosome1 GeneDB mRNA 2430847 2432720 . + . mRNA SPAC6B12.11 ; systematic_id "SPAC6B12.11" ; colour "2" ; gene "drc1 ||| SPAC6B12.11 ||| sld1" ; Alias "drc1" ; db_xref "SPD:17/17D11" ; synonym "sld2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:11937031; date=20100826" ; GO "GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006261; DNA replication
GO:0006271; DNA strand elongation
GO:0031574; S-M checkpoint
GO:0031261; DNA replication preinitiation complex
GO:0071163; DNA replication preinitiation complex assembly" ; primary_name "drc1" ; product "DNA replication checkpoint protein Drc1" ;
chromosome1 GeneDB mRNA 1740543 1743622 . - . mRNA SPAC105.01c ; systematic_id "SPAC105.01c" ; colour "7" ; gene "SPAC105.01c" ; Alias "kha1" ; db_xref "SPD:47/47E10" ; GO "GO:0015386; potassium:hydrogen antiporter activity
GO:0071805; potassium ion transmembrane transport
GO:0005886; plasma membrane
GO:0030007; potassium ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL094C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=name description, named from cerevisiae; db_xref=PMID:9428701; date=20100918" ; primary_name "kha1" ; product "potassium ion/proton antiporter Kha1 (predicted)" ;
chromosome1 GeneDB mRNA 1024168 1025761 . - . mRNA SPAC139.04c ; systematic_id "SPAC139.04c" ; colour "2" ; gene "fap2 ||| SPAC139.04c" ; Alias "fap2" ; db_xref "SPD:44/44B12" ; GO "GO:0051698; saccharopine oxidase activity
GO:0019477; L-lysine catabolism
GO:0050660; FAD binding
GO:0051700; fructosyl-amino acid oxidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fap2" ; product "L-saccharopine oxidase" ;
chromosome1 GeneDB mRNA 2150624 2151601 . + . mRNA SPAC23C11.10 ; db_xref "SPD:42/42A03" ; systematic_id "SPAC23C11.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20020618 ||| term=human c16orf57 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YLR132C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; date=20100629" ; colour "10" ; gene "SPAC23C11.10" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB mRNA 777259 778283 . + . mRNA SPAC4G8.08 ; db_xref "SPD:15/15D04" ; systematic_id "SPAC4G8.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YJL133W and YKR052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0031305; integral to mitochondrial inner membrane
GO:0005381; iron ion transmembrane transporter activity
GO:0048250; mitochondrial iron ion transport" ; gene "SPAC4G8.08" ; product "mitochondrial iron ion transporter (predicted)" ;
chromosome1 GeneDB mRNA 328196 329545 . - . mRNA SPAC12G12.10 ; systematic_id "SPAC12G12.10" ; colour "2" ; gene "SPAC12G12.10" ; Alias "wdr21" ; db_xref "SPD:20/20B09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DDB-box; db_xref=PMID:18794354; date=20090909 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18794354; date=20090909 ||| term=name description, after human WDR21; db_xref=PMID:18794354; cv=name_description; date=20090909" ; GO "GO:0070913; Ddb1-Wdr21 complex" ; primary_name "wdr21" ; product "WD repeat protein, human WDR21 family" ;
chromosome1 GeneDB mRNA 4810699 4811301 . - . mRNA SPAC22F8.12c ; systematic_id "SPAC22F8.12c" ; colour "2" ; gene "shf1 ||| SPAC22F8.12c" ; Alias "shf1" ; db_xref "SPD:04/04G11" ; GO "GO:0033503; HULC complex
GO:0004842; ubiquitin-protein ligase activity
GO:0006342; chromatin silencing
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL055C; date=20070716 ||| term=species distribution, conserved in Fungi; date=20090825 ||| term=species distribution, conserved in Fungi only; date=20090825 ||| term=misc, possibly related to human/mouse periphilin; cv=misc; date=20100226 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20101115" ; primary_name "shf1" ; product "small histone ubiquitination factor Shf1" ;
chromosome1 GeneDB mRNA 1931588 1934911 . - . mRNA SPAC3H1.02c ; db_xref "SPD:30/30A09" ; systematic_id "SPAC3H1.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL098C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; colour "7" ; GO "GO:0004222; metalloendopeptidase activity
GO:0006508; proteolysis
GO:0005737; cytoplasm" ; gene "SPAC3H1.02c" ; product "metallopeptidase (predicted)" ;
chromosome1 GeneDB mRNA 1774258 1776351 . + . mRNA SPAC17A5.12 ; systematic_id "SPAC17A5.12" ; colour "2" ; gene "ucp7 ||| SPAC17A5.12" ; note "possibly needs N-terminal truncating" ; Alias "ucp7" ; db_xref "SPD:27/27G12" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0030544; Hsp70 protein binding
GO:0031593; polyubiquitin binding
GO:0043130; ubiquitin binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDR320C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ucp7" ; product "UBA/TPR/DNAJ domain protein Ucp7" ;
chromosome1 GeneDB mRNA 591040 591555 . + . mRNA SPAC3H8.03 ; systematic_id "SPAC3H8.03" ; colour "7" ; gene "SPAC3H8.03" ; Alias "img2" ; db_xref "SPD:04/04F01" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0000002; mitochondrial genome maintenance
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR071C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "img2" ; product "mitochondrial ribosomal protein subunit Img2 (predicted)" ;
chromosome1 GeneDB mRNA 29764 30716 . + 2 mRNA SPAC977.01 ; systematic_id "SPAC977.01" ; codon_start "3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=similar to S. pombe SPAC750.05C and SPBC1348.02 and SPBPB2B2.19C; date=19700101" ; colour "12" ; gene "SPAC977.01" ; product "S. pombe specific 5Tm protein family" ;
chromosome1 GeneDB mRNA 3273942 3276580 . + . mRNA SPAC6G9.14 ; db_xref "SPD:27/27H03" ; systematic_id "SPAC6G9.14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=; date=19700101 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YGL014W and YGL178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0003729; mRNA binding
GO:0005737; cytoplasm" ; gene "SPAC6G9.14" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB mRNA 2502843 2505923 . + . mRNA SPAC23H3.06 ; systematic_id "SPAC23H3.06" ; colour "7" ; gene "apl6 ||| SPAC23H3.06" ; Alias "apl6" ; db_xref "SPD:28/28C01" ; GO "GO:0030123; AP-3 adaptor complex
GO:0006896; Golgi to vacuole transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=adaptin family; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGR261C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "apl6" ; product "AP-3 adaptor complex subunit Apl6 (predicted)" ;
chromosome1 GeneDB mRNA 136191 140284 . + . mRNA SPAC11D3.15 ; db_xref "SPD:48/48F05" ; systematic_id "SPAC11D3.15" ; GO "GO:0017168; 5-oxoprolinase (ATP-hydrolizing) activity
GO:0006749; glutathione metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, divergent duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YKL215C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPAC11D3.15" ; product "5-oxoprolinase (ATP-hydrolizing) (predicted)" ;
chromosome1 GeneDB mRNA 3620829 3623644 . - . mRNA SPAC17G6.16c ; systematic_id "SPAC17G6.16c" ; colour "2" ; gene "ysh1 ||| SPAC17G6.16c" ; Alias "ysh1" ; db_xref "SPD:47/47A07" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation
GO:0004521; endoribonuclease activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR277C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ysh1" ; product "mRNA cleavage and polyadenylation specificity factor complex endoribonuclease subunit Ysh1" ;
chromosome1 GeneDB mRNA 3272150 3272699 . - . mRNA SPAC6G9.13c ; systematic_id "SPAC6G9.13c" ; colour "2" ; gene "bqt1 ||| mug23 ||| rec26 ||| SPAC6G9.13c" ; Alias "bqt1" ; db_xref "SPD:01/01E06" ; synonym "mug23 ||| rec26" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed in response to mating pheromone; db_xref=PMID:16615890; cv=gene_ex; date=20060517 ||| term=gene expression, promoter contains MCB; db_xref=PMID:16615890; date=20060517 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0045132; meiotic chromosome segregation
GO:0045141; telomere clustering
GO:0032121; attachment of telomeres to spindle pole body
GO:0045141; telomere clustering
GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination
GO:0030437; sporulation (sensu Fungi)
; spindle pole body
GO:0000781; chromosome, telomeric region
GO:0034613; cellular protein localization
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding" ; primary_name "bqt1" ; product "bouquet formation protein Bqt1" ;
chromosome1 GeneDB mRNA 5085532 5087031 . + . mRNA SPAC1006.07 ; systematic_id "SPAC1006.07" ; colour "7" ; gene "SPAC1006.07" ; obsolete_name "tif1" ; db_xref "SPD:32/32F01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YKR059W and YJL138C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human EIF4A2 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; GO "GO:0003743; translation initiation factor activity
GO:0016281; eukaryotic translation initiation factor 4F complex
GO:0006413; translational initiation
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding" ; product "translation initiation factor eIF4A (predicted)" ;
chromosome1 GeneDB mRNA 2704253 2705900 . - . mRNA SPAC644.18c ; systematic_id "SPAC644.18c" ; colour "7" ; gene "bet3 ||| SPAC644.18c" ; Alias "bet3" ; db_xref "SPD:08/08B12" ; GO "GO:0030008; TRAPP complex
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR068C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bet3" ; product "TRAPP complex subunit Bet3 (predicted)" ;
chromosome1 GeneDB mRNA 4861530 4863502 . - . mRNA SPAC4F10.15c ; systematic_id "SPAC4F10.15c" ; colour "2" ; gene "wsp1 ||| SPAC4F10.15c" ; Alias "wsp1" ; db_xref "SPD:26/26G03" ; GO "GO:0030479; actin cortical patch
GO:0051286; cell tip
GO:0005826; contractile ring
GO:0005515; protein binding
GO:0000147; actin cortical patch assembly
GO:0000147; actin cortical patch assembly
GO:0045010; actin nucleation
GO:0045010; actin nucleation
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0030041; actin filament polymerization
GO:0000915; cytokinesis, contractile ring formation
GO:0000916; cytokinesis, contractile ring contraction
GO:0070314; G1 to G0 transition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Wiskott- Aldrich syndrome; date=19700101 ||| term=orthologous to S. cerevisiae YOR181W; date=19700101 ||| term=gene expression, promoter contains homolD box; cv=gene_ex; date=20070703 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human WAS ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "wsp1" ; product "WASp homolog" ;
chromosome1 GeneDB mRNA 4353704 4355246 . - . mRNA SPAC23D3.09 ; systematic_id "SPAC23D3.09" ; colour "2" ; gene "arp42 ||| arp4 ||| SPAC23D3.09" ; Alias "arp42" ; db_xref "SPD:22/22D12" ; synonym "arp4" ; GO "GO:0016586; RSC complex
GO:0016514; SWI/SNF complex
GO:0006338; chromatin remodeling
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0010551; regulation of specific transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL081C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to Brefeldin A; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706" ; primary_name "arp42" ; product "SWI/SNF and RSC complex subunit Arp42" ;
chromosome1 GeneDB mRNA 1949598 1951137 . + . mRNA SPAC3H1.10 ; db_xref "SPD:19/19H04" ; systematic_id "SPAC3H1.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "2" ; GO "GO:0016756; glutathione gamma- glutamylcysteinyltransferase activity
GO:0071276; cellular response to cadmium ion
GO:0071276; cellular response to cadmium ion
GO:0046938; phytochelatin biosynthesis" ; gene "SPAC3H1.10" ; product "phytochelatin synthetase" ;
chromosome1 GeneDB mRNA 4327249 4328451 . - . mRNA SPAC27F1.06c ; db_xref "SPD:17/17A05" ; systematic_id "SPAC27F1.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR449W and YML074C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Eukaryotes only; date=20100827 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC27F1.06c" ; product "FKBP-type peptidyl-prolyl cis-trans isomerase (predicted)" ; EC_number "5.2.1.8" ;
chromosome1 GeneDB mRNA 3415567 3416041 . - . mRNA SPAC3H5.10 ; systematic_id "SPAC3H5.10" ; colour "7" ; gene "rpl3202 ||| rpl32-2 ||| rpl32 ||| SPAC3H5.10" ; Alias "rpl3202" ; db_xref "SPD:41/41B04" ; synonym "rpl32-2 ||| rpl32" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL092W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl3202" ; product "60S ribosomal protein L32 (predicted)" ;
chromosome1 GeneDB mRNA 498111 498862 . + . mRNA SPAPB21F2.03 ; systematic_id "SPAPB21F2.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR081C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0030515; snoRNA binding
GO:0006364; rRNA processing
GO:0030686; 90S preribosome" ; gene "SPAPB21F2.03" ; product "ribosome biogenesis protein (predicted)" ; note "confirmed intron" ;
chromosome1 GeneDB mRNA 1245816 1253559 . - . mRNA SPAC56E4.04c ; systematic_id "SPAC56E4.04c" ; colour "2" ; gene "cut6 ||| SPAC56E4.04c" ; db_xref "SPD:34/34C12" ; Alias "cut6" ; GO "GO:0005829; cytosol
GO:0005524; ATP binding
GO:0003989; acetyl-CoA carboxylase activity
GO:0004075; biotin carboxylase activity
GO:0000920; cell separation during cytokinesis
GO:0042759; long-chain fatty acid biosynthesis
GO:0000280; nuclear division" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8769419; date=19700101 ||| term=orthologous to S. cerevisiae YNR016C and YMR207C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, biotinylated; attribution=pers. comm. J. Stolz; date=20100304" ; primary_name "cut6" ; product "acetyl-CoA/biotin carboxylase" ; EC_number "6.3.4.14" ;
chromosome1 GeneDB mRNA 5431599 5434838 . - . mRNA SPAC29B12.10c ; systematic_id "SPAC29B12.10c" ; colour "2" ; gene "SPAC29B12.10c ||| pgt1" ; Alias "pgt1" ; db_xref "SPD:46/46H11" ; GO "GO:0005887; integral to plasma membrane
GO:0034634; glutathione transmembrane transporter activity
GO:0033554; cellular response to stress
GO:0034775; glutathione transmembrane transport
GO:0034775; glutathione transmembrane transport
GO:0071276; cellular response to cadmium ion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL212C and YPR194C; date=19700101 ||| term=gene expression, expression induced by sulfur limitation; db_xref=PMID:18662319; cv=gene_ex; date=20080731 ||| term=catalytic activity, K(m)=63 microM; db_xref=PMID:18662319; cv=cat_act; date=20100123 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "pgt1" ; product "glutathione transporter Pgt1" ;
chromosome1 GeneDB mRNA 4797251 4799334 . - . mRNA SPAC22F8.07c ; systematic_id "SPAC22F8.07c" ; colour "2" ; db_xref "SPD:45/45E04" ; Alias "rtf1" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0042802; identical protein binding
GO:0043110; rDNA spacer replication fork barrier binding
GO:0071171; site-specific DNA replication termination at RTS1 barrier" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YBR049C and YDR026c; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=EMBL:AJ627891; date=20070728" ; primary_name "rtf1" ; product "replication termination factor Rtf1" ;
chromosome1 GeneDB mRNA 4775723 4777368 . + . mRNA SPAC11H11.01 ; systematic_id "SPAC11H11.01" ; colour "2" ; gene "SPAC11H11.01 ||| vps23 ||| sst6" ; Alias "sst6" ; db_xref "SPD:50/50G09" ; synonym "cps23" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=human TGS101 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YCL008C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20090725" ; GO "GO:0000813; ESCRT I complex
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport
GO:0006897; endocytosis" ; primary_name "sst6" ; product "ESCRT I complex subunit Vps23" ;
chromosome1 GeneDB mRNA 2494595 2495318 . - . mRNA SPAC23H3.02c ; systematic_id "SPAC23H3.02c" ; colour "2" ; gene "ini1 ||| SPAC23H3.02c" ; Alias "ini1" ; db_xref "SPD:04/04H12" ; GO "GO:0005634; nucleus
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14762117; date=20070321 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:14762117; date=20100705 ||| term=orthologous to S. cerevisiae YPR094W; date=19700101 ||| term=complementation, functionally complemented by human Ini1; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ini1" ; product "RING finger-like protein Ini1" ;
chromosome1 GeneDB mRNA 2461205 2462134 . - . mRNA SPAC19A8.13 ; systematic_id "SPAC19A8.13" ; colour "2" ; gene "usp101 ||| SPAC19A8.13 ||| snp1" ; Alias "usp101" ; db_xref "SPD:09/09G10" ; synonym "snp1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17264129; date=20070201 ||| term=orthologous to S. cerevisiae YIL061C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000243; commitment complex
GO:0005685; snRNP U1
GO:0030619; U1 snRNA binding
GO:0003729; mRNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000395; nuclear mRNA 5'-splice site recognition" ; primary_name "usp101" ; product "U1 snRNP-associated protein Usp101 (predicted)" ;
chromosome1 GeneDB mRNA 4036533 4037620 . - . mRNA SPAPJ698.02c ; systematic_id "SPAPJ698.02c" ; colour "2" ; gene "rps002 ||| rpsa-2 ||| rps0-2 ||| rps0 ||| SPAPJ698.02c" ; Alias "rps002" ; synonym "rpsa-2 ||| rps0-2 ||| rps0" ; GO "GO:0015935; small ribosomal subunit
GO:0005515; protein binding
GO:0042274; ribosomal small subunit biogenesis
GO:0006412; translation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14623272; date=19700101 ||| term=orthologous to S. cerevisiae YGR214W and YLR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps002" ; product "40S ribosomal protein S0B" ;
chromosome1 GeneDB mRNA 1635111 1635536 . - . mRNA SPAP27G11.13c ; Alias "nop10" ; systematic_id "SPAP27G11.13c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR072W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0006364; 35S primary transcript processing
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0001522; pseudouridine synthesis" ; gene "nop10 ||| SPAP27G11.13c" ; primary_name "nop10" ; product "small nucleolar ribonucleoprotein Nop10 (predicted)" ;
chromosome1 GeneDB mRNA 1286916 1289210 . - . mRNA SPAPB17E12.14c ; systematic_id "SPAPB17E12.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; GO "GO:0003873; 6-phosphofructo-2-kinase activity
GO:0006003; fructose 2,6-bisphosphate metabolic process
GO:0006110; regulation of glycolysis
GO:0005737; cytoplasm" ; colour "7" ; gene "SPAPB17E12.14c" ; product "6-phosphofructo-2-kinase (predicted)" ;
chromosome1 GeneDB mRNA 693780 697082 . + . mRNA SPAC22F3.06c ; systematic_id "SPAC22F3.06c" ; colour "7" ; gene "lon1 ||| SPAC22F3.06c" ; Alias "lon1" ; db_xref "SPD:48/48A06" ; GO "GO:0005759; mitochondrial matrix
GO:0004176; ATP-dependent peptidase activity
GO:0005524; ATP binding
GO:0006515; misfolded or incompletely synthesized protein catabolic process
GO:0004252; serine-type endopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=AAA family ATPase; date=20081222" ; primary_name "lon1" ; product "Lon protease homolog Lon1 (predicted)" ; EC_number "3.4.21.-" ;
chromosome1 GeneDB mRNA 5298771 5300086 . + . mRNA SPAC11E3.09 ; systematic_id "SPAC11E3.09" ; colour "2" ; gene "pyp3 ||| SPAC11E3.09" ; Alias "pyp3" ; db_xref "SPD:52/52A10" ; GO "GO:0004725; protein tyrosine phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0007346; regulation of progression through mitotic cell cycle
GO:0005737; cytoplasm
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:1464318; date=20101124 ||| term=phenotype, cell morphology, small cells; qualifier=overexpression; db_xref=PMID:1464318; date=20101124 ||| term=target is Cdc2; db_xref=PMID:1464318; date=19700101 ||| term=orthologous to S. cerevisiae YDL230W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pyp3" ; product "protein-tyrosine phosphatase Pyp3" ; EC_number "3.1.3.48" ;
chromosome1 GeneDB mRNA 2179936 2181257 . + . mRNA SPAC13F5.05 ; db_xref "SPD:17/17A11" ; systematic_id "SPAC13F5.05" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YOR288C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005788; endoplasmic reticulum lumen
GO:0003756; protein disulfide isomerase activity
GO:0006457; protein folding
GO:0034605; cellular response to heat
GO:0015035; protein disulfide oxidoreductase activity" ; gene "SPAC13F5.05" ; product "thioredoxin family protein (predicted)" ; EC_number "5.3.4.1" ;
chromosome1 GeneDB mRNA 3725837 3727255 . - . mRNA SPAC15E1.05c ; db_xref "SPD:18/18B12" ; systematic_id "SPAC15E1.05c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR007W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004306; ethanolamine-phosphate cytidylyltransferase activity
GO:0006646; phosphatidylethanolamine biosynthesis" ; gene "SPAC15E1.05c" ; product "ethanolamine-phosphate cytidylyltransferase (predicted)" ; EC_number "2.7.7.14" ;
chromosome1 GeneDB mRNA 2678568 2679061 . - . mRNA SPAC644.05c ; db_xref "SPD:03/03D10" ; systematic_id "SPAC644.05c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR252W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004170; dUTP diphosphatase activity
GO:0009213; pyrimidine deoxyribonucleoside triphosphate catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC644.05c" ; product "deoxyuridine 5'-triphosphate nucleotidohydrolase (predicted)" ; EC_number "3.6.1.23" ;
chromosome1 GeneDB mRNA 574760 577181 . - . mRNA SPAC13A11.02c ; systematic_id "SPAC13A11.02c" ; colour "7" ; gene "erg11 ||| SPAC13A11.02c" ; note "source of the name cyp51 unknown" ; Alias "erg11" ; db_xref "SPD:24/24A02" ; obsolete_name "cyp51" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cholesterinosis; date=20060920 ||| term=gene expression, transcriptionally regulated by Sre1; db_xref=PMID:15797383; cv=gene_ex; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0008398 ; sterol 14-demethylase activity
GO:0006696; ergosterol biosynthesis
GO:0005789; endoplasmic reticulum membrane
GO:0005515; protein binding" ; primary_name "erg11" ; product "sterol 14-demethylase (predicted)" ; EC_number "1.14.13.70" ; reserved_name "erg11" ;
chromosome1 GeneDB mRNA 2172457 2173777 . - . mRNA SPAC13F5.02c ; systematic_id "SPAC13F5.02c" ; colour "2" ; gene "ptr6 ||| taf7 ||| SPAC13F5.02c" ; Alias "ptr6" ; db_xref "SPD:22/22B07" ; synonym "taf7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR227C; date=19700101 ||| term=human TAFI55 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016973; poly(A)+ mRNA export from nucleus
GO:0005669; transcription factor TFIID complex
GO:0005634; nucleus
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity" ; primary_name "ptr6" ; product "transcription factor TFIID complex subunit Taf7" ;
chromosome1 GeneDB mRNA 4773687 4774561 . + . mRNA SPAC1782.11 ; systematic_id "SPAC1782.11" ; colour "2" ; gene "met14 ||| SPAC1782.11" ; Alias "met14" ; db_xref "SPD:08/08E03" ; GO "GO:0000103; sulfate assimilation
GO:0004020; adenylylsulfate kinase activity
GO:0009086; methionine biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL001C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "met14" ; product "adenylyl-sulfate kinase (predicted)" ;
chromosome1 GeneDB mRNA 1101741 1103754 . - . mRNA SPAC30D11.09 ; systematic_id "SPAC30D11.09" ; colour "2" ; gene "cwf19 ||| SPAC30D11.09" ; Alias "cwf19" ; db_xref "SPD:27/27D08" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human CWF19L2 homolog; date=20080312 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080312 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "cwf19" ; product "complexed with Cdc5 protein Cwf19" ;
chromosome1 GeneDB mRNA 4226982 4229989 . + . mRNA SPAC1F7.05 ; systematic_id "SPAC1F7.05" ; colour "2" ; gene "cdc22 ||| SPAC1F7.05" ; Alias "cdc22" ; db_xref "SPD:47/47B09" ; GO "GO:0005737; cytoplasm
GO:0005971; ribonucleoside-diphosphate reductase complex
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0004748; ribonucleoside-diphosphate reductase activity
GO:0009216; purine deoxyribonucleoside triphosphate biosynthesis
GO:0042278; purine nucleoside metabolism
GO:0009212; pyrimidine deoxyribonucleoside triphosphate biosynthesis
GO:0006213; pyrimidine nucleoside metabolism
GO:0090329; regulation of DNA-dependent DNA replication
GO:0007090; regulation of S phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8479429; date=19700101 ||| term=orthologous to S. cerevisiae YER070W and YIL066C; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; db_xref=PMID:14648198; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, promoter contains MCB; db_xref=PMID:14648198; date=20100630 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705" ; primary_name "cdc22" ; product "ribonucleoside reductase large subunit Cdc22" ; EC_number "1.17.4.1" ;
chromosome1 GeneDB mRNA 3841540 3842647 . + . mRNA SPAC4H3.08 ; db_xref "SPD:11/11E05" ; systematic_id "SPAC4H3.08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0006631; fatty acid metabolism
GO:0003857; 3-hydroxyacyl-CoA dehydrogenase activity
GO:0004300; enoyl-CoA hydratase activity
GO:0006635; fatty acid beta-oxidation
GO:0005782; peroxisomal matrix" ; gene "SPAC4H3.08" ; product "3-hydroxyacyl-CoA dehydrogenase (predicted)" ;
chromosome1 GeneDB mRNA 3014286 3017806 . + . mRNA SPAC31G5.15 ; literature "PMID:19286980" ; systematic_id "SPAC31G5.15" ; colour "2" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00561; ||| SPD:30/30B11" ; Alias "psd3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for ethanolamine; cv=phenotype; db_xref=PMID:198286980; qualifier=deletion; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPBC16E9.18; date=20090727 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19286980; date=20090727 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPBC16E9.18; date=20090727 ||| term=phenotype, cell morphology, misshapen cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPBC16E9.18; date=20090727 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YGR170W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0006656; phosphatidylcholine biosynthesis
GO:0004609; phosphatidylserine decarboxylase activity
GO:0000139; Golgi membrane
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0004609; phosphatidylserine decarboxylase activity
GO:0006646; phosphatidylethanolamine biosynthetic process
GO:0071775; regulation of cell cycle cytokinesis
GO:0008360; regulation of cell shape
GO:0005543; phospholipid binding" ; primary_name "psd3" ; product "phosphatidylserine decarboxylase Psd3" ; EC_number "4.1.1.65" ;
chromosome1 GeneDB mRNA 2643533 2645254 . + . mRNA SPAC4F8.14c ; systematic_id "SPAC4F8.14c" ; colour "2" ; gene "hcs1 ||| hcs ||| SPAC4F8.14c" ; Alias "hcs1" ; db_xref "SPD:24/24F06" ; synonym "hcs" ; GO "GO:0004421; hydroxymethylglutaryl-CoA synthase activity
GO:0005783; endoplasmic reticulum
GO:0006696; ergosterol biosynthesis
GO:0010142; farnesyl diphosphate biosynthesis, mevalonate pathway
GO:0006084; acetyl-CoA metabolism
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML126C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "hcs1" ; product "3-hydroxy-3-methylglutaryl-CoA synthase" ; EC_number "2.3.3.10" ;
chromosome1 GeneDB mRNA 3446366 3447964 . + . mRNA SPAC3A11.11c ; db_xref "SPD:14/14G09" ; systematic_id "SPAC3A11.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPAC9E9.11; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC3A11.11c" ; product "pyridoxal reductase (predicted)" ;
chromosome1 GeneDB mRNA 4870372 4871916 . + . mRNA SPAC4F10.18 ; systematic_id "SPAC4F10.18" ; colour "7" ; gene "SPAC4F10.18" ; Alias "nup37" ; db_xref "SPD:21/21F03" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human NUP37 ortholog; date=20100714" ; primary_name "nup37" ; product "WD repeat protein, nucleoporin Nup37 (predicted)" ;
chromosome1 GeneDB mRNA 4197560 4198600 . - . mRNA SPAC683.02c ; db_xref "SPD:31/31G06" ; systematic_id "SPAC683.02c" ; synonym "SPAC694.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=orthologous to S. cerevisiae YNL255C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human ZCCH9C ortholog; date=20100718" ; colour "10" ; gene "SPAC683.02c ||| SPAC694.01c" ; product "zf-CCHC type zinc finger protein" ;
chromosome1 GeneDB mRNA 2031108 2032097 . + . mRNA SPAC17H9.16 ; systematic_id "SPAC17H9.16" ; colour "7" ; gene "tom22 ||| SPAC17H9.16" ; Alias "tom22" ; db_xref "SPD:04/04G09" ; GO "GO:0015450; protein translocase activity
GO:0030150; protein import into mitochondrial matrix
GO:0005742; mitochondrial outer membrane translocase complex
GO:0005047; signal recognition particle binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL131W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tom22" ; product "mitochondrial TOM complex subunit Tom22 (predicted)" ;
chromosome1 GeneDB mRNA 4890998 4893636 . - . mRNA SPAC19B12.05c ; systematic_id "SPAC19B12.05c" ; colour "2" ; gene "fcp1 ||| SPAC19B12.05c" ; Alias "fcp1" ; db_xref "SPD:38/38D09" ; GO "GO:0005515; protein binding
GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0005634; nucleus
GO:0043623; cellular protein complex assembly
GO:0071775; regulation of cell cycle cytokinesis
GO:0070317; negative regulation of G1 to G0 transition
GO:0006357; regulation of trancription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YMR277W; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=target is Rpb4; db_xref=PMID:11934898; date=19700101 ||| term=catalytic activity, active site mapping; db_xref=PMID:12556522; cv=cat_act; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cytokinesis defects; cv=phenotype; db_xref=PMID:17502918; date=20100222 ||| term=warning, gene structure updated; date=20030422" ; primary_name "fcp1" ; product "CTD phosphatase Fcp1" ; EC_number "3.1.3.3" ;
chromosome1 GeneDB mRNA 5182826 5186127 . - . mRNA SPAC26F1.01 ; systematic_id "SPAC26F1.01" ; colour "7" ; gene "sec74 ||| SPAC26F1.01 ||| SPAPJ691.01c" ; Alias "sec74" ; db_xref "SPD:29/29D09" ; synonym "SPAPJ691.01c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YPR095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005086; ARF guanyl-nucleotide exchange factor activity
GO:0006886; intracellular protein transport
GO:0006887; exocytosis
GO:0016192; vesicle-mediated transport" ; primary_name "sec74" ; product "guanyl-nucleotide exchange factor Sec74 (predicted)" ;
chromosome1 GeneDB mRNA 5493222 5494899 . + . mRNA SPAC869.10c ; systematic_id "SPAC869.10c" ; colour "7" ; db_xref "SPD:34/34G09" ; Alias "put4" ; GO "GO:0005886; plasma membrane
GO:0015193; L-proline permease activity
GO:0035524; proline transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR348C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, expression induced by proline; db_xref=PMID:????????; date=20100504" ; primary_name "put4" ; product "proline specific plasma membrane permease Put4 (predicted)" ;
chromosome1 GeneDB mRNA 4837650 4838311 . - . mRNA SPAC4F10.05c ; db_xref "SPD:07/07F03" ; systematic_id "SPAC4F10.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR239C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0009249; protein lipoylation
GO:0016874; ligase activity
GO:0005739; mitochondrion" ; gene "SPAC4F10.05c" ; product "mitochondrial lipoate-protein ligase (predicted)" ;
chromosome1 GeneDB mRNA 2178651 2179482 . - . mRNA SPAC13F5.08 ; Alias "vts1" ; systematic_id "SPAC13F5.08" ; synonym "new6" ; colour "7" ; GO "GO:0005768; endosome
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathhway" ; controlled_curation "term=conserved in Fungi; date=20090716 ||| term=conserved in Eukaryotes; date=20090716 ||| term=conserved in Eukaryotes only; date=20090716 ||| term=conserved in Metazoa; date=20090716 ||| term=conserved in Vertebrates; date=20090716 ||| term=similar to S. cerevisiae YLR181C; date=20090716 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; gene "SPAC13F5.08" ; primary_name "vts1" ; product "Vps20 associated proten Vts1 (predicted)" ;
chromosome1 GeneDB mRNA 826538 828090 . - . mRNA SPAC2G11.10c ; db_xref "SPD:23/23G06" ; systematic_id "SPAC2G11.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0042292; URM1 activating enzyme activity
GO:0034599; cellular response to oxidative stress
GO:0005737; cytoplasm
GO:0032447; protein urmylation" ; gene "SPAC2G11.10c" ; product "URM1 activating enzyme (predicted)" ;
chromosome1 GeneDB mRNA 4097334 4098062 . + . mRNA SPAC23A1.11 ; systematic_id "SPAC23A1.11" ; colour "7" ; gene "rpl1602 ||| rpl16-2 ||| SPAC23A1.11" ; Alias "rpl1602" ; db_xref "SPD:42/42F09" ; obsolete_name "rpl13a-2" ; synonym "rpl16-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL133C and YNL069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; primary_name "rpl1602" ; product "60S ribosomal protein L13/L16 (predicted)" ;
chromosome1 GeneDB mRNA 4469204 4470356 . + . mRNA SPAC9E9.14 ; systematic_id "SPAC9E9.14" ; colour "2" ; gene "vps24 ||| SPAC9E9.14" ; Alias "vps24" ; db_xref "SPD:08/08B04" ; GO "GO:0000815; ESCRT III complex
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps24" ; product "vacuolar sorting protein Vps24" ;
chromosome1 GeneDB mRNA 3093708 3094885 . - . mRNA SPAC16A10.08c ; systematic_id "SPAC16A10.08c" ; colour "8" ; gene "SPAC16A10.08c ||| SPAC589.01c ||| mug74" ; Alias "mug74" ; db_xref "SPD:41/41G07" ; synonym "SPAC589.01c" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug74" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1764336 1766721 . - . mRNA SPAC17A5.07c ; systematic_id "SPAC17A5.07c" ; colour "7" ; gene "ulp2 ||| SPAC17A5.07c" ; Alias "ulp2" ; db_xref "SPD:38/38C10" ; GO "GO:0016926; protein desumoylation
GO:0016929; SUMO-specific protease activity
GO:0005634; nucleus
GO:0030261; chromosome condensation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ulp2" ; product "SUMO deconjugating cysteine peptidase Ulp2 (predicted)" ;
chromosome1 GeneDB mRNA 1776500 1777371 . + . mRNA SPAC17A5.13 ; db_xref "SPD:43/43E03" ; systematic_id "SPAC17A5.13" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0003934; GTP cyclohydrolase I activity
GO:0009396; folic acid and derivative biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR267C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC17A5.13" ; product "GTP cyclohydrolase (predicted)" ; EC_number "3.5.4.16" ;
chromosome1 GeneDB mRNA 3953802 3956829 . + . mRNA SPAC2F3.15 ; systematic_id "SPAC2F3.15" ; colour "2" ; gene "lsk1 ||| SPAC2F3.15" ; Alias "lsk1" ; db_xref "SPD:46/46B09" ; GO "GO:0032806; carboxy-terminal domain protein kinase complex
GO:0005634; nucleus
GO:0008024; positive transcription elongation factor complex b
GO:0008353; RNA polymerase II carboxy-terminal domain kinase activity
GO:0004693; cyclin-dependent protein kinase activity
GO:0005634; nucleus
GO:0005515; protein binding
GO:0070816; RNA polymerase II CTD terminal phosphorylation
GO:0008353; RNA polymerase II carboxy-terminal domain kinase activity
GO:0031565; cytokinesis checkpoint
GO:0031566; cytokinesis, contractile ring maintenance
GO:0031566; cytokinesis, contractile ring maintenance
GO:0070816; phosphorlyation of RNA polymerase II C- terminal domain
GO:0031031; positive regulation of septation initiation signaling
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL139W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Latrunculin Sensitive Kinase; cv=name_description; date=20090712 ||| term=phenotype, sensitive to latrunculin A; cv=phenotype; date=20090712 ||| term=target is Rpb1; qualifier=phosphorylates; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Rpb1; db_xref=PMID:17502918; date=20100222" ; primary_name "lsk1" ; product "P-TEFb-associated cyclin-dependent protein kinase Lsk1" ;
chromosome1 GeneDB mRNA 4374384 4382741 . + . mRNA SPAC1527.01 ; systematic_id "SPAC1527.01" ; colour "2" ; gene "mok11 ||| SPAC23D3.15 ||| SPAC1527.01" ; Alias "mok11" ; db_xref "SPD:34/34B10" ; synonym "SPAC23D3.15" ; GO "GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0031233; intrinsic to external side of plasma membrane
GO:0030979; alpha-glucan biosynthesis
GO:0047657; alpha-1,3-glucan synthase activity
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20070309 ||| term=similar to S. pombe Mok1 and Mok12 and Mok13 and Mok14; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:16420355; date=20080430 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mok11" ; product "alpha-1,3-glucan synthase Mok11" ; EC_number "2.4.1.183" ;
chromosome1 GeneDB mRNA 3494658 3497628 . + . mRNA SPAC328.09 ; db_xref "SPD:18/18E03" ; systematic_id "SPAC328.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YOR222W and YPL134C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0005215; intracellular transporter activity
GO:0005342; organic acid transporter activity" ; gene "SPAC328.09" ; product "mitochondrial 2-oxoadipate and 2-oxoglutarate transporter (predicted)" ;
chromosome1 GeneDB mRNA 1704900 1707322 . - . mRNA SPAC664.02c ; systematic_id "SPAC664.02c" ; colour "2" ; gene "arp8 ||| SPAC664.02c" ; Alias "arp8" ; db_xref "SPD:27/27H07" ; GO "GO:0005634; nucleus
GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR141C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "arp8" ; product "actin-like protein Arp8" ;
chromosome1 GeneDB mRNA 1658428 1663321 . - . mRNA SPAC343.11c ; systematic_id "SPAC343.11c" ; colour "2" ; gene "msc1 ||| SPAC343.11c" ; db_xref "SPD:31/31A04" ; Alias "msc1" ; GO "GO:0000790; nuclear chromatin
GO:0000118; histone deacetylase complex
GO:0032452; histone demethylase activity
GO:0005515; protein binding
GO:0016568 ; chromatin modification
GO:0016573; histone acetylation
GO:0016577; histone demethylation
GO:0007126; meiosis
GO:0007126; meiosis
GO:0006355; regulation of transcription, DNA- dependent
GO:0006974; response to DNA damage stimulus
GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C5HC2 type; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=jmjC domain; date=19700101 ||| term=jmjN domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15082762; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Multi copy Suppressor of Chk1; cv=name_description; db_xref=PMID:15082762; date=20090717" ; primary_name "msc1" ; product "multi-copy suppressor of Chk1" ;
chromosome1 GeneDB mRNA 4034149 4035805 . - . mRNA SPAC27E2.10c ; systematic_id "SPAC27E2.10c" ; colour "2" ; gene "rfc3 ||| SPAC27E2.10c ||| SPAPJ698.01c" ; Alias "rfc3" ; db_xref "SPD:39/39E11" ; synonym "SPAPJ698.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YNL290W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005663; DNA replication factor C complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0000077; DNA damage checkpoint
GO:0006261; DNA replication
GO:0031390; Ctf18 RFC-like complex
GO:0031391; Elg1 RFC-like complex
GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0003689; DNA clamp loader activity
GO:0043596; nuclear relication fork" ; primary_name "rfc3" ; product "DNA replication factor C complex subunit Rfc3" ;
chromosome1 GeneDB mRNA 966250 967591 . + . mRNA SPAC222.11 ; systematic_id "SPAC222.11" ; colour "7" ; gene "hem13 ||| SPAC222.11" ; Alias "hem13" ; db_xref "SPD:13/13B07" ; GO "GO:0004109; coproporphyrinogen oxidase activity
GO:0006783; heme biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR044W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hem13" ; product "coproporphyrinogen III oxidase (predicted)" ; EC_number "1.3.3.3" ; reserved_name "hem13" ;
chromosome1 GeneDB mRNA 1611513 1612669 . + . mRNA SPAP27G11.02 ; systematic_id "SPAP27G11.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL133C and YMR115W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006515; misfolded or incompletely synthesized protein catabolic process
GO:0051787; misfolded protein binding
GO:0005743; mitochondrial inner membrane
GO:0031942; iAAA complex" ; gene "SPAP27G11.02" ; product "TPR repeat protein, involved in mitochondrial protein turnover (predicted)" ;
chromosome1 GeneDB mRNA 4510983 4514964 . - . mRNA SPAC27D7.03c ; systematic_id "SPAC27D7.03c" ; colour "2" ; gene "mei2 ||| SPAC27D7.03c" ; Alias "mei2" ; db_xref "SPD:33/33G01" ; GO "GO:0033620; Mei2 nuclear dot
GO:0034064; Tor2-Mei2-Ste11 complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004860; protein kinase inhibitor
GO:0007127; meiosis I
GO:0045836; positive regulation of meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:11423126; cv=localization; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=modification, ubiquitinated; cv=pt_mod; db_xref=PMID:11702950; date=20071120 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:11702950; date=20090213 ||| term=target of Ran1; qualifier=phosphorylated_by; date=20100826 ||| term=target of Pat1; qualifier=phosphorylated_by; residue=Ser438|Ser527; date=19700101 ||| term=gene expression, transcriptionally regulated by Ste11; cv=gene_ex; date=19700101" ; primary_name "mei2" ; product "RNA-binding protein involved in meiosis Mei2" ;
chromosome1 GeneDB mRNA 2511091 2512846 . + . mRNA SPAC23H3.10 ; systematic_id "SPAC23H3.10" ; colour "2" ; gene "ssr2 ||| SPAC23H3.10" ; Alias "ssr2" ; db_xref "SPD:24/24E03" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0006338; chromatin remodeling
GO:0016514; SWI/SNF complex
GO:0016586; RSC complex
GO:0010551; regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Swi/Snf RSC; cv=name_description; date=20061009 ||| term=zinc finger protein; date=19700101 ||| term=zf-ZZ type; date=19700101 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YJL176C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ssr2" ; product "SWI/SNF and RSC complex subunit Ssr2" ;
chromosome1 GeneDB mRNA 1838497 1840293 . + . mRNA SPAC1399.05c ; db_xref "SPD:49/49B03" ; systematic_id "SPAC1399.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC1399.05c" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome1 GeneDB mRNA 4785162 4786280 . - . mRNA SPAC22F8.02c ; systematic_id "SPAC22F8.02c" ; colour "2" ; gene "pvg5 ||| SPAC22F8.02c ||| mug50" ; Alias "pvg5" ; db_xref "SPD:17/17F02" ; synonym "mug50" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "cell wall biosynthesis (sensu Fungi); GO:0009272; GO:0009272
GO:0051072; 4,6-pyruvylated galactose residue biosynthesis
GO:0009277; fungal-type cell wall" ; primary_name "pvg5" ; product "PvGal biosynthesis protein Pvg5" ;
chromosome1 GeneDB mRNA 4533443 4534378 . - . mRNA SPAC27D7.12c ; systematic_id "SPAC27D7.12c" ; colour "2" ; db_xref "SPD:08/08G09" ; Alias "but1" ; synonym "SPAC27D7.12 ||| mug107" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14623327; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=thioredoxin family; date=20081111 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:14623327; date=20081111 ||| term=species distribution, orthologs cannot be distinguished; date=20091020" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:0005634; nucleus" ; primary_name "but1" ; product "neddylation pathway protein But1" ;
chromosome1 GeneDB mRNA 3832309 3835593 . + . mRNA SPAC4H3.05 ; systematic_id "SPAC4H3.05" ; colour "2" ; gene "srs2 ||| SPAC4H3.05" ; Alias "srs2" ; db_xref "SPD:47/47C06" ; GO "GO:0004003; ATP-dependent DNA helicase activity
GO:0031297; collapsed replication fork processing
GO:0006301; postreplication repair
GO:0000725; recombinational repair
GO:0000725; recombinational repair
GO:0034644; cellular response to UV" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL092W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618" ; primary_name "srs2" ; product "ATP-dependent DNA helicase, UvrD subfamily" ; EC_number "3.6.1.-" ;
chromosome1 GeneDB mRNA 34298 34816 . + . mRNA SPAC977.04 ; systematic_id "SPAC977.04" ; pseudo "_no_value" ; colour "13" ; gene "SPAC977.04" ; product "pseudogene" ;
chromosome1 GeneDB mRNA 365485 366362 . + . mRNA SPAC630.10 ; db_xref "SPD:10/10D04" ; systematic_id "SPAC630.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR141C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Eukaryotes only; date=20100802 ||| term=species distribution, conserved in Vertebrates; date=20100802 ||| term=species distribution, conserved in Metazoa; date=20100802 ||| term=human c7orf60 ortholog; date=20100802" ; colour "10" ; gene "SPAC630.10" ; product "conserved eukaryotic protein, DUF3321 family" ;
chromosome1 GeneDB mRNA 361557 361874 . + . mRNA SPAC630.15 ; systematic_id "SPAC630.15" ; colour "8" ; gene "SPAC630.15 ||| mug177" ; db_xref "SPD:51/51G04" ; Alias "mug177" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug177" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3412288 3413566 . + . mRNA SPAC3H5.13 ; Alias "new4" ; systematic_id "SPAC3H5.13" ; controlled_curation "term=conserved in Eukaryotes; date=20100419 ||| term=conserved in Eukaryotes only; date=20100419 ||| term=conserved in Metazoa; date=20100419 ||| term=conserved in Vertebrates; date=20100419 ||| term=conserved in Fungi; date=20100419 ||| term=no apparent S. cerevisiae ortholog; date=20100419 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "10" ; primary_name "new4" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB mRNA 5357341 5358774 . - . mRNA SPAC4D7.04c ; db_xref "SPD:14/14H05" ; systematic_id "SPAC4D7.04c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR002C and YMR101C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005783; endoplasmic reticulum
GO:0004659; prenyltransferase activity
GO:0019408; dolichol biosynthesis
GO:0006487; protein amino acid N-linked glycosylation
GO:0006486; protein amino acid glycosylation" ; gene "SPAC4D7.04c" ; product "cis-prenyltransferase (predicted)" ; EC_number "2.5.1.-" ;
chromosome1 GeneDB mRNA 3869103 3869594 . + . mRNA SPAC1071.08 ; systematic_id "SPAC1071.08" ; colour "2" ; gene "rpp203 ||| rpp2-3 ||| rla6 ||| SPAC1071.08" ; Alias "rpp203" ; db_xref "SPD:03/03E03" ; synonym "rpp2-3 ||| rla6" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL039W and YDR382W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006414; translational elongation" ; primary_name "rpp203" ; product "60S acidic ribosomal protein P2C subunit" ;
chromosome1 GeneDB mRNA 276881 278530 . + . mRNA SPAC1F5.07c ; systematic_id "SPAC1F5.07c" ; colour "7" ; gene "hem14 ||| SPAC1F5.07c" ; Alias "hem14" ; db_xref "SPD:44/44G07" ; GO "GO:0004729; protoporphyrinogen oxidase activity
GO:0006783; heme biosynthesis
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060725 ||| term=orthologous to S. cerevisiae YER014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; primary_name "hem14" ; product "protoporphyrinogen oxidase (predicted)" ; EC_number "1.3.3.4" ; reserved_name "hem14" ;
chromosome1 GeneDB mRNA 908839 911074 . + . mRNA SPAC1687.05 ; systematic_id "SPAC1687.05" ; colour "2" ; gene "pli1 ||| SPAC1687.05" ; Alias "pli1" ; db_xref "SPD:28/28A05" ; GO "GO:0019789; SUMO ligase activity
GO:0051983; regulation of chromosome segregation
GO:0016925; protein sumoylation
GO:0032204; regulation of telomere maintenance
GO:0000019; regulation of mitotic recombination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-MIZ; date=19700101 ||| term=SAP domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR156C and YDR409W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pli1" ; product "SUMO E3 ligase Pli1" ;
chromosome1 GeneDB mRNA 4344572 4346170 . - . mRNA SPAC23D3.05c ; systematic_id "SPAC23D3.05c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC23D3.05c" ; product "alcohol dehydrogenase pseudogene" ; note "shows stress induced expression on microarray, but has 4 frameshifts" ;
chromosome1 GeneDB mRNA 585597 587312 . + . mRNA SPAC13A11.06 ; systematic_id "SPAC13A11.06" ; colour "7" ; gene "SPAC13A11.06 ||| SPAC3H8.01" ; db_xref "SPD:35/35E10" ; synonym "SPAC3H8.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR087C and YLR134W and YLR044C and YDL080C; date=19700101 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004737; pyruvate decarboxylase activity
GO:0000949; aromatic amino acid family catabolic process to alcohol via Ehrlich pathway
GO:0019655; glucose catabolic process to ethanol
GO:0006090; pyruvate metabolic process" ; product "pyruvate decarboxylase (predicted)" ; EC_number "4.1.1.1" ;
chromosome1 GeneDB mRNA 2748910 2749547 . + . mRNA SPAC6F6.09 ; systematic_id "SPAC6F6.09" ; colour "7" ; db_xref "SPD:04/04D11" ; Alias "eaf6" ; GO "GO:0043189; H4/H2A histone acetyltransferase complex
GO:0005634; nucleus
GO:0006350; transcription
GO:0006281; DNA repair
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR082C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "eaf6" ; product "NuA4 histone acetyltransferase complex subunit Eaf6 (predicted)" ;
chromosome1 GeneDB mRNA 201971 203236 . - . mRNA SPAC13G6.15c ; systematic_id "SPAC13G6.15c" ; colour "7" ; gene "SPAC13G6.15c ||| SPAC24B11.04c" ; db_xref "SPD:04/04F09" ; synonym "SPAC24B11.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL159C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008597; calcium-dependent protein serine/threonine phosphatase regulator activity
GO:0030346; protein phosphatase 2B binding
GO:0019722; calcium-mediated signaling" ; product "calcipressin (predicted)" ;
chromosome1 GeneDB mRNA 1441012 1441969 . + . mRNA SPAC3A12.12 ; systematic_id "SPAC3A12.12" ; colour "7" ; gene "atp11 ||| SPAC3A12.12" ; Alias "atp11" ; db_xref "SPD:11/11E03" ; GO "GO:0005759; mitochondrial matrix
GO:0006461; protein complex assembly
GO:0043461; F-type ATPase complex assembly
GO:0007005; mitochondrion organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL315C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atp11" ; product "F1-ATPase chaperone Atp11 (predicted)" ;
chromosome1 GeneDB mRNA 2452132 2456477 . - . mRNA SPAC32A11.03c ; systematic_id "SPAC32A11.03c" ; colour "2" ; gene "phx1 ||| SPAC32A11.03c" ; db_xref "SPD:29/29E08" ; Alias "phx1" ; GO "GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pombe HomeoboX; cv=name_description; date=20100104" ; primary_name "phx1" ; product "homeobox transcription factor Phx1" ;
chromosome1 GeneDB mRNA 170732 174635 . - . mRNA SPAC13G6.01c ; systematic_id "SPAC13G6.01c" ; colour "2" ; gene "rad8 ||| SPAC5H10.14c ||| SPAC13G6.01c" ; Alias "rad8" ; db_xref "SPD:48/48C04" ; synonym "SPAC5H10.14c" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20070129 ||| term=zinc finger protein; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR032W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8290359; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=20080528 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004842; ubiquitin-protein ligase activity
GO:0006281; DNA repair
GO:0006281; DNA repair
GO:0006281; DNA repair
GO:0009650; UV protection
GO:0006289; nucleotide-excision repair
GO:0006301; postreplication repair
GO:0006974; response to DNA damage stimulus" ; primary_name "rad8" ; product "ubiquitin-protein ligase E3 Rad8" ;
chromosome1 GeneDB mRNA 514552 515659 . - . mRNA SPAC227.11c ; db_xref "SPD:22/22B09" ; systematic_id "SPAC227.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR057W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; db_xref=PMID:12077121; qualifier=predicted; date=20090213 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0030433; ER-associated protein catabolism
GO:0005529; sugar binding
GO:0001948; glycoprotein binding" ; gene "SPAC227.11c" ; product "sensor for misfolded ER glycoproteins Yos9 (predicted)" ;
chromosome1 GeneDB mRNA 1927872 1928365 . - . mRNA SPAP14E8.05c ; systematic_id "SPAP14E8.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR085C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human tMEM14A and TMEM14c ortholog; date=20100718" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAP14E8.05c" ; product "UPF0136 family protein" ;
chromosome1 GeneDB mRNA 3247766 3252656 . + . mRNA SPAC6G9.04 ; systematic_id "SPAC6G9.04" ; colour "2" ; gene "mug79 ||| SPAC6G9.04" ; Alias "mug79" ; db_xref "SPD:48/48F06" ; GO "GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug79" ; product "meiotically upregulated gene Mug79" ;
chromosome1 GeneDB mRNA 116392 118152 . + . mRNA SPAC11D3.06 ; db_xref "SPD:21/21B09" ; systematic_id "SPAC11D3.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR338C and YHR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; gene "SPAC11D3.06" ; product "MatE family transporter (predicted)" ;
chromosome1 GeneDB mRNA 2544866 2546979 . + . mRNA SPAC4A8.04 ; systematic_id "SPAC4A8.04" ; colour "2" ; db_xref "SPD:21/21F12" ; Alias "isp6" ; synonym "prb1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed in response to nitrogen starvation; cv=gene_ex; db_xref=PMID:11872168; date=20060516 ||| term=orthologous to S. cerevisiae YEL060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008236; serine-type peptidase activity
GO:0006401; RNA catabolism
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0006995; cellular response to nitrogen starvation
GO:0000747; conjugation with cellular fusion
GO:0051603; proteolysis during cellular protein catabolism
GO:0051171; regulation of nitrogen metabolism
GO:0007033; vacuole organization and biogenesis
GO:0000324; vacuole" ; primary_name "isp6" ; product "vacuolar serine protease Isp6" ; EC_number "3.4.24.- ||| 3.4.21.-" ;
chromosome1 GeneDB mRNA 3385923 3388070 . + . mRNA SPAC8E11.01c ; systematic_id "SPAC8E11.01c" ; colour "7" ; gene "SPAC8E11.01c ||| SPAC959.01" ; db_xref "SPD:24/24G07" ; synonym "SPAC959.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL162W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0004564; beta-fructofuranosidase activity
GO:0044275; cellular carbohydrate catabolism
GO:0034484; raffinose catabolic process
GO:0005987; sucrose catabolic process" ; product "beta-fructofuranosidase (predicted)" ; EC_number "3.2.1.26" ;
chromosome1 GeneDB mRNA 1041491 1043033 . + . mRNA SPAC23C4.08 ; systematic_id "SPAC23C4.08" ; colour "2" ; gene "rho3 ||| SPAC23C4.08" ; db_xref "SPD:18/18D04" ; Alias "rho3" ; GO "GO:0005525; GTP binding
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0005515; protein binding
GO:0003924; GTPase activity
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0010590; regulation of cell separation during cytokinesis
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0007264; small GTPase mediated signal transduction
GO:0017157; regulation of exocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Rho family; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YIL118W; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; residue=202-205; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090426" ; primary_name "rho3" ; product "Rho family GTPase Rho3" ;
chromosome1 GeneDB mRNA 5403214 5408167 . + . mRNA SPAC29B12.01 ; systematic_id "SPAC29B12.01" ; colour "2" ; gene "ino80 ||| SPAC3G6.12 ||| SPAC29B12.01" ; Alias "ino80" ; db_xref "SPD:31/31A05" ; synonym "SPAC3G6.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YGL150C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling
GO:0006281; DNA repair
GO:0043140; ATP-dependent 3' to 5' DNA helicase activity" ; primary_name "ino80" ; product "SNF2 family helicase Ino80" ;
chromosome1 GeneDB mRNA 2094110 2094963 . - . mRNA SPAC3C7.14c ; systematic_id "SPAC3C7.14c" ; colour "2" ; gene "obr1 ||| uhp1 ||| apt1 ||| SPAC3C7.14c" ; Alias "obr1" ; db_xref "SPD:06/06G10" ; synonym "apt1 ||| uhp1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, ubiquitinated; cv=pt_mod; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7769002; date=19700101 ||| term=orthologous to S. cerevisiae YBR052C and YCR004C and YDR032C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, gene name conflict; cv=warning; date=20100126 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0030466; chromatin silencing at silent mating- type cassette
GO:0005515; protein binding
GO:0042393; histone binding
GO:0071238; cellular response to brefeldin A
GO:0071238; cellular response to brefeldin A
GO:0005634; nucleus" ; primary_name "obr1" ; product "ubiquitinated histone-like protein Uhp1" ;
chromosome1 GeneDB mRNA 4068863 4070840 . - . mRNA SPAC19G12.13c ; systematic_id "SPAC19G12.13c" ; colour "2" ; gene "poz1 ||| SPAC19G12.13c" ; db_xref "SPD:11/11H09" ; Alias "poz1" ; GO "GO:0000781; chromosome,telomeric region
GO:0070187; telosome
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051974; negative regulation of telomerase activity
GO:0032211; negative regulation of telomere maintenance via telomerase
GO:0032211; negative regulation of telomere maintenance via telomerase
GO:0016233; telomere end protection
GO:0048239; negative regulation of DNA recombination at telomere" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=20080609 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "poz1" ; product "Pot1 associated protein Poz1" ;
chromosome1 GeneDB mRNA 1887555 1889755 . + . mRNA SPAPB1A10.13 ; systematic_id "SPAPB1A10.13" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, no apparent orthologs; date=20090303" ; GO "GO:0005737; cytoplasm" ; colour "8" ; gene "SPAPB1A10.13" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1672285 1673655 . - . mRNA SPAC343.14c ; db_xref "SPD:44/44B07" ; systematic_id "SPAC343.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, leukoencephalopathy; date=20060821 ||| term=orthologous to S. cerevisiae YLR291C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, neurological disorders; date=20060926" ; colour "7" ; GO "GO:0006413; translational initiation
; eukaryotic translation initiation factor 2B complex
GO:0003743; translation initiation factor activity" ; gene "SPAC343.14c" ; product "translation initiation factor eIF2B beta subunit (predicted)" ;
chromosome1 GeneDB mRNA 4019912 4021558 . + . mRNA SPAC27E2.07 ; systematic_id "SPAC27E2.07" ; colour "2" ; gene "pvg2 ||| SPAC27E2.07 ||| mug53" ; Alias "pvg2" ; db_xref "SPD:18/18E06" ; synonym "mug53" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0051286; cell tip
cell wall biosynthesis (sensu Fungi); GO:0009272; GO:0009272
GO:0051072; 4,6-pyruvylated galactose residue biosynthesis
GO:0009986; cell surface
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "pvg2" ; product "galactose residue biosynthesis protein Pvg2" ;
chromosome1 GeneDB mRNA 3552358 3554117 . - . mRNA SPAC17A2.02c ; db_xref "SPD:11/11G10" ; systematic_id "SPAC17A2.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR114W and YJR116W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TMEM165 ortholog; date=20100718" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; gene "SPAC17A2.02c" ; product "DUF887 family protein" ;
chromosome1 GeneDB mRNA 2261963 2262436 . - . mRNA SPAC4G9.06c ; systematic_id "SPAC4G9.06c" ; colour "7" ; gene "SPAC4G9.06c ||| chz1" ; Alias "chz1" ; db_xref "SPD:04/04A02" ; GO "GO:0005678; chromatin assembly complex
GO:0005634; nucleus
GO:0042393; histone binding
GO:0006338; chromatin remodeling
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER030W; date=20070814 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "chz1" ; product "histone chaperone Chz1 (predicted)" ;
chromosome1 GeneDB mRNA 362248 363714 . - . mRNA SPAC630.09c ; systematic_id "SPAC630.09c" ; colour "8" ; gene "SPAC630.09c ||| mug58" ; Alias "mug58" ; db_xref "SPD:43/43D04" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR205W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "mug58" ; product "glycerate kinase (predicted)" ;
chromosome1 GeneDB mRNA 4901619 4904256 . + . mRNA SPAC19B12.10 ; systematic_id "SPAC19B12.10" ; colour "2" ; gene "sst2 ||| SPAC19B12.10" ; Alias "sst2" ; db_xref "SPD:25/25A12" ; GO "GO:0032153; cell division site
GO:0005768; endosome
GO:0030133; transport vesicle
GO:0004221; ubiquitin thioesterase activity
GO:0004843; ubiquitin-specific protease activity
GO:0045324; late endosome to vacuole transport
GO:0016579; protein deubiquitination
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, AMSH; date=20070110 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human STAMBP ortholog; date=20101001" ; primary_name "sst2" ; product "human AMSH/STAMBP protein homolog, ubiquitin specific-protease" ;
chromosome1 GeneDB mRNA 5202366 5205202 . + . mRNA SPAC19D5.01 ; systematic_id "SPAC19D5.01" ; colour "2" ; gene "pyp2 ||| SPAC19D5.01" ; Alias "pyp2" ; db_xref "SPD:37/37E03" ; GO "GO:0005737; cytoplasm
GO:0004725; protein tyrosine phosphatase activity
GO:0045835; negative regulation of meiosis
GO:0006470; protein amino acid dephosphorylation
GO:0005515; protein binding
GO:0051403; stress-activated MAPK cascade
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:1448087; date=20101126 ||| term=orthologous to S. cerevisiae YOR208W and YER075C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Sty1; qualifier=dephosphorylates; db_xref=PMID:7657164; date=20100823" ; primary_name "pyp2" ; product "tyrosine phosphatase Pyp2" ; EC_number "3.1.3.48" ;
chromosome1 GeneDB mRNA 103941 104953 . + . mRNA SPAC1F8.08 ; db_xref "SPD:51/51H03" ; systematic_id "SPAC1F8.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1F8.08" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4047633 4049222 . + . mRNA SPAC19G12.03 ; systematic_id "SPAC19G12.03" ; colour "2" ; gene "cda1 ||| SPAC19G12.03" ; Alias "cda1" ; db_xref "SPD:13/13F08" ; GO "GO:0005631; chitosan layer of spore wall
GO:0005619; spore wall (sensu Fungi)
GO:0004099; chitin deacetylase activity
GO:0034232; spore wall chitin catabolic process
GO:0030476; spore wall assembly (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR307W and YLR308W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "cda1" ; product "chitin deacetylase Cda1" ; EC_number "3.5.1.41" ;
chromosome1 GeneDB mRNA 3017918 3018798 . - . mRNA SPAC31G5.16c ; systematic_id "SPAC31G5.16c" ; colour "2" ; gene "dpm1 ||| SPAC31G5.16c" ; Alias "dpm1" ; db_xref "SPD:10/10H03" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006487; protein amino acid N-linked glycosylation
GO:0006493; protein amino acid O-linked glycosylation
GO:0006506; GPI anchor biosynthesis
; dolichyl-phosphate beta-D- mannosyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR183W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dpm1" ; product "dolichol-phosphate mannosyltransferase catalytic subunit Dpm1" ; EC_number "2.4.1.83" ;
chromosome1 GeneDB mRNA 469981 472957 . - . mRNA SPAC24H6.09 ; systematic_id "SPAC24H6.09" ; colour "2" ; db_xref "SPD:38/38C05" ; Alias "gef1" ; GO "GO:0032153; cell division site
GO:0030428; cell septum
GO:0005737; cytoplasm
GO:0031097; medial ring
GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0005515; protein binding
GO:0032488; Cdc42 protein signal tansduction
GO:0032319; regulation of Rho GTPase activity
GO:0035023; regulation of Rho protein signal transduction
GO:0032955; regulation of barrier septum formation
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12529446; date=19700101 ||| term=phenotype, cell morphology, round cells; qualifier=overexpression; db_xref=PMID:12972551; cv=phenotype; date=20090426 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12972551; cv=phenotype; date=20090426 ||| term=pathway, Ras1-Scd; db_xref=PMID:12529446; date=19700101 ||| term=human DNMBP ortholog; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gef1" ; product "RhoGEF Gef1" ;
chromosome1 GeneDB mRNA 3536511 3538545 . + . mRNA SPAC1B1.01 ; systematic_id "SPAC1B1.01" ; colour "2" ; gene "SPAC1B1.01" ; Alias "deb1" ; db_xref "SPD:26/26A12" ; synonym "rdp1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=gene expression, transcriptionally regulates rhp51; db_xref=PMID:11073995; cv=gene_ex; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DNA binding specificity, binds DRE 5'-NG[GT]T[G/A]-3'; db_xref=PMID:11073995; cv=DNA_binding_specificity; date=20100302 ||| term=name description, DRE Element Binding; cv=name_description; date=20100302 ||| term=warning, gene name conflict; cv=warning; date=20100302" ; GO "GO:0000790; nuclear chromatin
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent" ; primary_name "deb1" ; product "transcription factor Deb1/Rdp1" ;
chromosome1 GeneDB mRNA 2564629 2566806 . + . mRNA SPAC4A8.10 ; db_xref "SPD:49/49D09" ; systematic_id "SPAC4A8.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL109C and YDR444W and YGL144C and YOR059C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0005811; lipid particle
GO:0016298; lipase activity
GO:0006629; lipid metabolism
GO:0044242; cellular lipid catabolic process" ; gene "SPAC4A8.10" ; product "lipase (predicted)" ;
chromosome1 GeneDB mRNA 5106598 5110338 . + . mRNA SPAC29A4.19c ; systematic_id "SPAC29A4.19c" ; colour "2" ; gene "cta5 ||| SPAC29A4.19c" ; Alias "cta5" ; db_xref "SPD:48/48C07" ; GO "GO:0005388; calcium-transporting ATPase activity
GO:0006874; cellular calcium ion homeostasis
GO:0070588; transmembrane calcium ion tranport
GO:0005794; Golgi apparatus
GO:0015693; magnesium ion tranport
GO:0010961; cellular magnesium ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR291W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=phenotype, sensitive to calcium; cv=phenotype; with=GeneDB_Spombe:SPAPB2B4.04c; db_xref=PMID:19168988; date=20090424 ||| term=phenotype, sensitive to amiodarone; cv=phenotype; with=GeneDB_Spombe:SPAPB2B4.04c; db_xref=PMID:19168988; date=20090424 ||| term=phenotype, sensitive to magnesium; cv=phenotype; with=GeneDB_Spombe:SPBC31E1.02c; db_xref=PMID:19168988; date=20090424" ; primary_name "cta5" ; product "Ca2+/Mn2+ transporting P-type ATPase P5 type Cta5" ;
chromosome1 GeneDB mRNA 4478332 4479931 . - . mRNA SPAC17C9.12 ; db_xref "SPD:20/20D01" ; systematic_id "SPAC17C9.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER120W and YBL091C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006020; myo-inositol metabolism
GO:0005789; endoplasmic reticulum membrane
GO:0045047; protein targeting to ER" ; gene "SPAC17C9.12" ; product "MSP domain (predicted)" ;
chromosome1 GeneDB mRNA 5476698 5478012 . + . mRNA SPAC922.03 ; db_xref "SPD:16/16G11" ; systematic_id "SPAC922.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0008660; 1-aminocyclopropane-1-carboxylate deaminase activity
GO:0019541; propionote metabolic process" ; gene "SPAC922.03" ; product "1-aminocyclopropane-1-carboxylate deaminase (predicted)" ;
chromosome1 GeneDB mRNA 2914463 2918147 . + . mRNA SPAC513.05 ; systematic_id "SPAC513.05" ; colour "7" ; gene "ams1 ||| SPAC513.05" ; Alias "ams1" ; db_xref "SPD:30/30B12" ; GO "GO:0009313; oligosaccharide catabolism
GO:0000329; vacuolar membrane
GO:0004559; alpha-mannosidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL156W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "ams1" ; product "alpha-mannosidase (predicted)" ; reserved_name "ams1" ;
chromosome1 GeneDB mRNA 2890158 2890887 . + . mRNA SPACUNK4.11c ; db_xref "SPD:07/07A07" ; systematic_id "SPACUNK4.11c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Eukaryotes; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20091106 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106" ; colour "10" ; gene "SPACUNK4.11c" ; product "M-phase phosphoprotein 6 family protein" ;
chromosome1 GeneDB mRNA 1619483 1620131 . - . mRNA SPAP27G11.06c ; Alias "vas2" ; systematic_id "SPAP27G11.06c" ; synonym "aps1" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:19624755; allele=vas2-1; cv=phenotype; date=20090817 ||| term=phenotype, sensitive to FK605; allele=vas2-1; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=orthologous to S. cerevisiae YLR170C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030121; AP-1 adaptor complex
GO:0005794; Golgi apparatus
GO:0005768; endosome
GO:0030276; clathrin binding
GO:0016197; endosome transport
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport" ; gene "SPAP27G11.06c" ; primary_name "vas2" ; product "AP-1 adaptor complex sigma subunit Aps1" ;
chromosome1 GeneDB mRNA 4764447 4765711 . + . mRNA SPAC1782.05 ; db_xref "SPD:16/16C02" ; systematic_id "SPAC1782.05" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0007052; mitotic spindle organization and biogenesis
GO:0072543; phosphatase type 2A activator activity
GO:0003755; peptidyl prolyl cis-trans isomerase activity
GO:0007165; signal transduction" ; gene "SPAC1782.05" ; product "phosphotyrosyl phosphatase activator homolog (predicted)" ;
chromosome1 GeneDB mRNA 1749891 1753080 . + . mRNA SPAC17A5.01 ; systematic_id "SPAC17A5.01" ; colour "7" ; gene "SPAC17A5.01 ||| pex6" ; Alias "pex6" ; db_xref "SPD:29/29F12" ; GO "GO:0016887; ATPase activity
GO:0007031; peroxisome organization and biogenesis
GO:0005777; peroxisome
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Zellweger syndrome; date=20060920 ||| term=disease associated, peroxisomal defects; date=20080601 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YNL329C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pex6" ; product "peroxin-6 (predicted)" ;
chromosome1 GeneDB mRNA 3570007 3572345 . - . mRNA SPAC17A2.09c ; systematic_id "SPAC17A2.09c" ; colour "2" ; gene "csx1 ||| SPAC17A2.09c" ; Alias "csx1" ; db_xref "SPD:39/39F02" ; GO "GO:0005737; cytoplasm
GO:0010610; regulation or mRNA stability in response to oxidative stress
GO:0003729; mRNA binding
GO:0000932; cytoplasmic mRNA processing body
GO:0070935; 3' UTR mediated mRNA stabilization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YBR212W and YHR086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:14633985; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "csx1" ; product "RNA-binding protein Csx1" ;
chromosome1 GeneDB mRNA 4606321 4611543 . + . mRNA SPAC1093.01 ; systematic_id "SPAC1093.01" ; colour "10" ; gene "SPAC12B10.18 ||| SPAC1093.01" ; Alias "SPAC12B10.18" ; db_xref "SPD:49/49G11" ; synonym "SPAC12B10.18" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PPR domains; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "SPAC12B10.18" ; product "PPR repeat protein" ;
chromosome1 GeneDB mRNA 5119527 5121673 . + . mRNA SPAC29A4.14c ; db_xref "SPD:11/11C12" ; systematic_id "SPAC29A4.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR329C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; GO "GO:0005778; peroxisomal membrane
GO:0006625; protein targeting to peroxisome
GO:0045046; protein import into peroxisome membrane" ; colour "7" ; gene "SPAC29A4.14c" ; product "peroxin-3 peroxisome import protein (predicted)" ;
chromosome1 GeneDB mRNA 109829 110455 . - . mRNA SPAC11D3.02c ; db_xref "SPD:04/04A01" ; systematic_id "SPAC11D3.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible horizontal transfer; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100902" ; colour "10" ; gene "SPAC11D3.02c" ; product "ELLA family acetyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 3196998 3202485 . + . mRNA SPAC1486.05 ; systematic_id "SPAC1486.05" ; colour "2" ; gene "SPAC1486.05 ||| nup189" ; Alias "nup189" ; db_xref "SPD:48/48H04" ; GO "GO:0031080; Nup107-160 complex
; nuclear membrane
GO:0005643; nuclear pore
GO:0008233; peptidase activity
GO:0005515; protein binding
GO:0051301; cell division
GO:0006997; nuclear organization and biogenesis
GO:0006913; nucleocytoplasmic transport
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=FG repeat; date=19700101 ||| term=orthologous to S. cerevisiae YGL092W and YKL068W and YMR047C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human NUP98 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "nup189" ; product "nucleoporin Nup189" ;
chromosome1 GeneDB mRNA 5487116 5488740 . - . mRNA SPAC922.07c ; db_xref "SPD:24/24A10" ; systematic_id "SPAC922.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR170C and YMR169C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004028; 3-chloroallyl aldehyde dehydrogenase activity
GO:0006081; aldehyde metabolism
GO:0019483; beta-alanine biosynthesis
GO:0006598; polyamine catabolism" ; gene "SPAC922.07c" ; product "aldehyde dehydrogenase (predicted)" ; EC_number "1.2.1.5" ;
chromosome1 GeneDB mRNA 4405990 4409338 . - . mRNA SPAC29E6.03c ; systematic_id "SPAC29E6.03c" ; colour "7" ; db_xref "SPD:48/48D02" ; Alias "uso1" ; synonym "SPAC30.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=armadillo repeat protein; qualifier=inferred from context; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YDL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030134; ER to Golgi transport vesicle membrane
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0035493; SNARE complex assembly" ; primary_name "uso1" ; product "ER to Golgi tethering factor Uso1 (predicted)" ;
chromosome1 GeneDB mRNA 2831579 2832622 . - . mRNA SPAC3F10.08c ; db_xref "SPD:09/09G04" ; systematic_id "SPAC3F10.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL019W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing
GO:0005737; cytoplasm" ; gene "SPAC3F10.08c" ; product "rRNA processing protein Faf1 (predicted)" ;
chromosome1 GeneDB mRNA 2428020 2428979 . + . mRNA SPAC6B12.09 ; systematic_id "SPAC6B12.09" ; colour "7" ; gene "trm10 ||| SPAC6B12.09" ; Alias "trm10" ; db_xref "SPD:12/12F10" ; GO "GO:0009019; tRNA (guanine-N1-)-methyltransferase activity
GO:0030488; tRNA methylation
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=19700101 ||| term=orthologous to S. cerevisiae YOL093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trm10" ; product "tRNA m(1)G methyltransferase Trm10 (predicted)" ;
chromosome1 GeneDB mRNA 247897 248560 . + . mRNA SPAC806.07 ; systematic_id "SPAC806.07" ; colour "2" ; gene "ndk1 ||| SPAC806.07" ; Alias "ndk1" ; db_xref "SPD:04/04A08" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0004550; nucleoside diphosphate kinase activity
GO:0005829; cytosol
GO:0006183; GTP biosynthesis
GO:0006228; UTP biosynthesis
GO:0006241; CTP biosynthesis
GO:0005524; ATP binding
GO:0000747; conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060920 ||| term=orthologous to S. cerevisiae YKL067W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "ndk1" ; product "nucleoside diphosphate kinase Ndk1" ; EC_number "2.7.4.6" ;
chromosome1 GeneDB mRNA 600826 601485 . - . mRNA SPAC3H8.07c ; systematic_id "SPAC3H8.07c" ; colour "7" ; gene "SPAC3H8.07c ||| pac10" ; Alias "pac10" ; db_xref "SPD:42/42D03" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex
GO:0000226; microtubule cytoskeleton organization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pac10" ; product "prefoldin subunit 3 Pac10 (predicted)" ;
chromosome1 GeneDB mRNA 1895420 1896631 . + . mRNA SPAC140.01 ; systematic_id "SPAC140.01" ; colour "7" ; gene "sdh2 ||| SPAC140.01" ; Alias "sdh2" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00190; ||| SPD:09/09C12" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006121; mitochondrial electron transport, succinate to ubiquinone
GO:0008177; succinate dehydrogenase (ubiquinone) activity
GO:0005749; respiratory chain complex II (sensu Eukaryota)
GO:0006105; succinate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, pheochromocytoma; date=20091120 ||| term=human SDHB ortholog; date=20091120 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "sdh2" ; product "succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit (predicted)" ; EC_number "1.3.5.1" ;
chromosome1 GeneDB mRNA 3625574 3627544 . + . mRNA SPAC1142.01 ; systematic_id "SPAC1142.01" ; colour "10" ; gene "SPAC17G6.18 ||| SPAC1142.01" ; Alias "SPAC17G6.18" ; db_xref "SPD:46/46E07" ; synonym "SPAC17G6.18" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR333C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human TCF25 ortholog; date=20100718 ||| term=warning, gene structure updated; date=20080502" ; primary_name "SPAC17G6.18" ; product "DUF654 family protein" ;
chromosome1 GeneDB mRNA 4259985 4261207 . + . mRNA SPAC21E11.07 ; systematic_id "SPAC21E11.07" ; colour "7" ; gene "SPAC21E11.07 ||| SPAC2C4.01" ; db_xref "SPD:15/15F05" ; synonym "SPAC2C4.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR122W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005759; mitochondrial matrix
GO:0016226; iron-sulfur cluster assembly" ; product "iron-sulphur cluster biogenesis protein (predicted)" ;
chromosome1 GeneDB mRNA 4934611 4936926 . + . mRNA SPAC1B3.05 ; systematic_id "SPAC1B3.05" ; colour "7" ; gene "not3 ||| SPAC1B3.05" ; Alias "not3" ; db_xref "SPD:37/37B01" ; GO "GO:0030015; CCR4-NOT core complex
GO:0005737; cytoplasm
GO:0030528; transcription regulator activity
GO:0006354; RNA elongation
GO:0006402; mRNA catabolism
GO:0000289; poly(A) tail shortening
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL038C and YPR072W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "not3" ; product "CCR4-Not complex subunit Not3/5 (predicted)" ;
chromosome1 GeneDB mRNA 1861934 1862944 . + . mRNA SPAPB1A10.02 ; Alias "scm3" ; systematic_id "SPAPB1A10.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL139C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19217403; date=20090422 ||| term=phenotype, chromosome segregation defects; allele=Scm3-6|Scm3-19; cv=phenotype; db_xref=PMID:19217403; date=20090422 ||| term=target is Cnp1; qualifier=localization_target; db_xref=PMID:19217403; date=20090422 ||| term=species distribution, conserved in Metazoa; db_xref=PMID:19563746; date=20090720 ||| term=species distribution, conserved in Vertebrates; db_xref=PMID:19563746; date=20090720 ||| term=species distribution, conserved in Eukaryotes only; date=20090720" ; colour "2" ; GO "GO:0000780; condensed nuclear chromosome, pericentric region
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0034501; protein localization to kinetochore
GO:0031066; regulation of histone deacetyation at centromere" ; gene "scm3 ||| SPAPB1A10.02" ; primary_name "scm3" ; product "CENP-A chaperone Scm3" ;
chromosome1 GeneDB mRNA 3898301 3899687 . - . mRNA SPAC926.08c ; db_xref "SPD:17/17C12" ; systematic_id "SPAC926.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0042254; ribosome biogenesis and assembly
GO:0006364; rRNA processing
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0003723; RNA binding" ; gene "SPAC926.08c" ; product "Brix domain protein Rpf2 (predicted)" ;
chromosome1 GeneDB mRNA 200121 201255 . + . mRNA SPAC13G6.14 ; systematic_id "SPAC13G6.14" ; colour "2" ; gene "aps1 ||| SPAC13G6.14 ||| SPAC24B11.03" ; Alias "aps1" ; db_xref "SPD:07/07C02" ; synonym "SPAC24B11.03" ; GO "GO:0008486; diphosphoinositol-polyphosphate diphosphatase activity
GO:0015959; diadenosine polyphosphate catabolic process
GO:0071544; diphosphoinositol catabolic process
GO:0071544; diphosphoinositol catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12387729; date=19700101 ||| term=orthologous to S. cerevisiae YOR163W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "aps1" ; product "diadenosine 5',5'''-p1,p6-hexaphosphate hydrolase Aps1" ; EC_number "3.6.1.52" ;
chromosome1 GeneDB mRNA 4986738 4989338 . - . mRNA SPAC1952.11c ; systematic_id "SPAC1952.11c" ; colour "2" ; gene "ure2 ||| SPAC1952.11c" ; db_xref "SPD:29/29B03" ; Alias "ure2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "ure2" ; product "urease Ure2" ; EC_number "3.5.1.5" ;
chromosome1 GeneDB mRNA 5471561 5474548 . - . mRNA SPAC1039.11c ; systematic_id "SPAC1039.11c" ; colour "7" ; gene "SPAC922.02c ||| SPAC1039.11c" ; Alias "SPAC922.02c" ; db_xref "SPD:29/29G11" ; synonym "SPAC922.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe agl1 and SPAC30D11.01c; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20100104" ; GO "GO:0004558; alpha-glucosidase activity
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "SPAC922.02c" ; product "alpha-glucosidase (predicted)" ; EC_number "3.2.1.20" ;
chromosome1 GeneDB mRNA 4224081 4225665 . + . mRNA SPAC1F7.04 ; systematic_id "SPAC1F7.04" ; colour "2" ; gene "rho1 ||| SPAC1F7.04" ; Alias "rho1" ; db_xref "SPD:32/32B05" ; GO "GO:0000935; barrier septum
GO:0051286; cell tip
GO:0031234; extrinsic to internal side of plasma membrane
GO:0030427; site of polarized growth
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0007266; Rho protein signal transduction
GO:0060583; regulation of actin cortical patch localization
GO:0032956; regulation of actin cytoskeleton organization
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0090334; regulation of 1,3-beta-glucan biosynthetic process
GO:0032949; regulation of alpha-glucan biosynthetic process
GO:0032955; regulation of barrier septum formation
; regulation of establishment and/or maintenance of cell polarity
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0030100; regulation of endocytosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9491802; date=19700101 ||| term=orthologous to S. cerevisiae YPR165W; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=Rho family; date=19700101 ||| term=target is Pck1; db_xref=PMID:10504305; date=20100823 ||| term=target is Pck2; db_xref=PMID:10504305; date=20100823 ||| term=target of Rgf2; db_xref=PMID:16324155; date=20100823 ||| term=target of Rgf1; db_xref=PMID:16324155; date=20100823 ||| term=target of Rgf3; db_xref=PMID:15546915; date=20100823" ; primary_name "rho1" ; product "Rho family GTPase Rho1" ;
chromosome1 GeneDB mRNA 5265443 5266427 . - . mRNA SPAPJ760.03c ; systematic_id "SPAPJ760.03c" ; colour "8" ; gene "adg1 ||| SPAPJ760.03c" ; note "ace2 dependent gene" ; Alias "adg1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; cv=gene_ex; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; primary_name "adg1" ; product "sequence orphan" ; reserved_name "adg1" ;
chromosome1 GeneDB mRNA 4305949 4306399 . + . mRNA SPAC25G10.06 ; systematic_id "SPAC25G10.06" ; colour "7" ; gene "rps2801 ||| rps28-1 ||| SPAC25G10.06" ; Alias "rps2801" ; db_xref "SPD:02/02D04" ; synonym "rps28-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR167C and YLR264W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; primary_name "rps2801" ; product "40S ribosomal protein S28 (predicted)" ;
chromosome1 GeneDB mRNA 488742 489402 . + . mRNA SPAC24H6.02c ; db_xref "SPD:06/06A11" ; systematic_id "SPAC24H6.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-DNL; date=19700101 ||| term=orthologous to S. cerevisiae YNL310C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005744; mitochondrial inner membrane presequence translocase complex
GO:0005759; mitochondrial matrix
GO:0030544; Hsp70 protein binding
GO:0030150; protein import into mitochondrial matrix
GO:0051082; unfolded protein binding" ; gene "SPAC24H6.02c" ; product "TIM23 translocase complex subunit Tim15 (predicted)" ;
chromosome1 GeneDB mRNA 1229151 1230250 . - . mRNA SPAC10F6.12c ; systematic_id "SPAC10F6.12c" ; colour "2" ; gene "mam4 ||| SPAC10F6.12c" ; Alias "mam4" ; db_xref "SPD:43/43A01" ; GO "GO:0004671; protein-S-isoprenylcysteine O- methyltransferase activity
GO:0071432; peptide mating pheromone maturation involved in conjugation with cellular fusion
GO:0005789; endoplasmic reticulum membrane
GO:0034613; cellular protein localization
GO:0000749; response to pheromone during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR410C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "mam4" ; product "protein-S isoprenylcysteine O-methyltransferase Mam4" ; EC_number "2.1.1.100" ;
chromosome1 GeneDB mRNA 5389631 5391386 . - . mRNA SPAC3G6.06c ; systematic_id "SPAC3G6.06c" ; colour "2" ; db_xref "SPD:25/25F04" ; Alias "rad2" ; synonym "fen1" ; GO "GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0017108; 5'-flap endonuclease activity
GO:0005515; protein binding
GO:0045145; single-stranded DNA specific 5'-3' exodeoxyribonuclease activity
GO:0043137; DNA replication, removal of RNA primer
GO:0000731; DNA synthesis during DNA repair
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=XP-G family; date=19700101 ||| term=phenotype, sensitive to MMS; qualifier=hyper|deletion; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YKL113C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20071114 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rad2" ; product "FEN-1 endonuclease Rad2" ;
chromosome1 GeneDB mRNA 1494670 1495077 . + . mRNA SPAC5D6.10c ; systematic_id "SPAC5D6.10c" ; colour "8" ; gene "SPAC5D6.10c ||| mug116" ; db_xref "SPD:03/03B07" ; Alias "mug116" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, ORF in compositionally biased region; cv=warning; date=20070104 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug116" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2673837 2674883 . + . mRNA SPAC4F8.02c ; systematic_id "SPAC4F8.02c" ; colour "7" ; gene "SPAC4F8.02c ||| SPAC644.02 ||| mrpl40" ; Alias "mrpl40" ; db_xref "SPD:43/43D06" ; synonym "SPAC644.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL173W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; primary_name "mrpl40" ; product "mitochondrial ribosomal protein subunit L40 (predicted)" ;
chromosome1 GeneDB mRNA 1430231 1432655 . - . mRNA SPAC3A12.06c ; db_xref "SPD:46/46G06" ; systematic_id "SPAC3A12.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDL206W and YJR106W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; colour "7" ; gene "SPAC3A12.06c" ; product "sodium/calcium exchanger (predicted)" ;
chromosome1 GeneDB mRNA 4699763 4700560 . + . mRNA SPAC1834.04 ; systematic_id "SPAC1834.04" ; colour "2" ; gene "hht1 ||| SPAC1834.04" ; Alias "hht1" ; db_xref "SPD:03/03B12" ; GO "GO:0000788; nuclear nucleosome
GO:0003677; DNA binding
GO:0006333; chromatin assembly or disassembly
GO:0030702; chromatin silencing at centromere
GO:0030702; chromatin silencing at centromere
GO:0030702; chromatin silencing at centromere
GO:0032015; regulation of Ran protein signal transduction
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR010W and YNL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; residue=S10; cv=pt_mod; date=20090213 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K4|K9; cv=pt_mod; date=20100311 ||| term=target of Hrk1; qualifier=phosphorylated_by; db_xref=PMID:20929775; date=20101115" ; primary_name "hht1" ; product "histone H3 h3.1" ;
chromosome1 GeneDB mRNA 446491 450627 . + . mRNA SPAC23E2.02 ; systematic_id "SPAC23E2.02" ; colour "2" ; gene "lsd2 ||| SPAC23E2.02 ||| swm2 ||| saf140" ; Alias "lsd2" ; db_xref "SPD:48/48F11" ; synonym "swm2 ||| saf140" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16990277; date=20070421 ||| term=HMG box; qualifier=inferred from context; date=20070421 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070421 ||| term=human KDM1B ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0033193; Lsd1/2 complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005634; nucleus
GO:0034649; histone demethylase activity (H3- monomethyl-K4 specific)
GO:0032452; histone demethylase activity
GO:0031491; nucleosome binding
GO:0003714; transcription corepressor activity
GO:0006338; chromatin remodeling
GO:0033169; histone H3-K9 demethylation
GO:0045892; negative regulation of transcription, DNA-dependent
GO:0045893; positive regulation of transcription, DNA-dependent
GO:0040020; regulation of meiosis
GO:0034605; cellular response to heat" ; primary_name "lsd2" ; product "histone demethylase SWIRM2 (predicted)" ;
chromosome1 GeneDB mRNA 3033581 3033916 . - . mRNA SPAC1786.04 ; db_xref "SPD:51/51G11" ; systematic_id "SPAC1786.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC1786.04" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 675466 678271 . - . mRNA SPAC22F3.13 ; systematic_id "SPAC22F3.13" ; colour "2" ; gene "tsc1 ||| SPAC22F3.13" ; Alias "tsc1" ; db_xref "SPD:39/39A02" ; GO "GO:0033596; TSC1-TSC2 complex
GO:0005096; GTPase activator activity
GO:0005515; protein binding
GO:0043091; L-arginine import
GO:0031929; TOR signaling pathway
GO:0006995; cellular response to nitrogen starvation
GO:0033157; regulation of intracellular protein transport
GO:0000747; conjugation woth cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, conjugation defects; db_xref=PMID:12136010; cv=phenotype; date=20100204 ||| term=human TSC1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=disease associated, tumor suppressor syndrome, tuberous sclereosis; date=19700101 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "tsc1" ; product "hamartin" ;
chromosome1 GeneDB mRNA 5178318 5179443 . + . mRNA SPAC26F1.04c ; systematic_id "SPAC26F1.04c" ; colour "7" ; gene "SPAC26F1.04c ||| etr1" ; Alias "etr1" ; db_xref "SPD:17/17F03" ; GO "GO:0016631; enoyl-[acyl-carrier-protein] reductase activity
GO:0006633; fatty acid biosynthesis
GO:0009060; aerobic respiration
GO:0004024; alcohol dehydrogenase activity, zinc- dependent
GO:0008270; zinc ion binding
GO:0005739; mitochondrion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "etr1" ; product "enoyl-[acyl-carrier protein] reductase (predicted)" ; EC_number "1.3.1.-" ;
chromosome1 GeneDB mRNA 3514019 3515173 . + . mRNA SPAC16E8.08 ; db_xref "SPD:11/11F04" ; systematic_id "SPAC16E8.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC16E8.08" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 62989 63732 . + . mRNA SPAC977.15 ; db_xref "SPD:41/41E11" ; systematic_id "SPAC977.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL049C; date=19700101 ||| term=human CMBL ortholog; date=20100827 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Vertebrates; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827" ; colour "10" ; gene "SPAC977.15" ; product "dienelactone hydrolase family" ;
chromosome1 GeneDB mRNA 1206875 1210561 . - . mRNA SPAC10F6.02c ; systematic_id "SPAC10F6.02c" ; colour "2" ; gene "prp22 ||| SPAC10F6.02c" ; Alias "prp22" ; db_xref "SPD:48/48D08" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0000390; spliceosome disassembly
GO:0005681; spliceosome complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YER013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "prp22" ; product "ATP-dependent RNA helicase Prp22" ;
chromosome1 GeneDB mRNA 1021690 1024112 . + . mRNA SPAC139.03 ; db_xref "SPD:27/27A07" ; systematic_id "SPAC139.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC139.03" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome1 GeneDB mRNA 3179343 3179992 . - . mRNA SPAC3G9.03 ; systematic_id "SPAC3G9.03" ; colour "2" ; gene "rpl2301 ||| rpl23-1 ||| SPAC3G9.03" ; Alias "rpl2301" ; db_xref "SPD:31/31E06" ; synonym "rpl23-1" ; controlled_curation "term=orthologous to S. cerevisiae YBL087C and YER117W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl2301" ; product "60S ribosomal protein L23" ;
chromosome1 GeneDB mRNA 5575193 5575564 . - . mRNA SPAC750.07c ; systematic_id "SPAC750.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; colour "12" ; GO "GO:0009986; cell surface" ; gene "SPAC750.07c" ; product "S. pombe specific GPI anchored protein family 1" ; note "term=truncated" ;
chromosome1 GeneDB mRNA 4578323 4580633 . + . mRNA SPAC12B10.03 ; systematic_id "SPAC12B10.03" ; colour "2" ; gene "SPAC12B10.03" ; Alias "bun62" ; db_xref "SPD:26/26A10" ; synonym "wdr20" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:2000158; positive regulation of ubiquitin- specific protease activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Binding Upb Nine of 62 kDa; cv=name_description; date=20100415" ; primary_name "bun62" ; product "WD repeat protein, human WDR20 family, Bun62" ;
chromosome1 GeneDB mRNA 929159 929473 . - . mRNA SPAC1687.23c ; db_xref "SPD:51/51G01" ; systematic_id "SPAC1687.23c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC1687.23c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1329091 1333323 . - . mRNA SPAC6F12.10c ; systematic_id "SPAC6F12.10c" ; colour "7" ; gene "ade3 ||| min11 ||| SPAC6F12.10c" ; Alias "ade3" ; db_xref "SPD:39/39D08" ; synonym "min11" ; GO "GO:0005737; cytoplasm
GO:0006189; 'de novo' IMP biosynthesis
GO:0004642; phosphoribosylformylglycinamidine synthase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, inferred from genetic map position; cv=warning; date=20100326" ; primary_name "ade3" ; product "phosphoribosylformylglycinamidine synthase Ade3 (predicted)" ; EC_number "6.3.5.3" ;
chromosome1 GeneDB mRNA 270941 272323 . - . mRNA SPAC1F5.10 ; db_xref "SPD:22/22F09" ; systematic_id "SPAC1F5.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing" ; gene "SPAC1F5.10" ; product "ATP-dependent RNA helicase, eIF4A related (predicted)" ;
chromosome1 GeneDB mRNA 715377 716827 . + . mRNA SPAC1296.04 ; systematic_id "SPAC1296.04" ; colour "7" ; gene "SPAC1296.04 ||| mug65" ; note "similarity is *very low* but they are reciprocal best hits, also both seem to contain novel dysferlin-C terminal domain" ; Alias "mug65" ; db_xref "SPD:06/06G02" ; GO "GO:0030476; spore wall assembly (sensu Fungi)
GO:0005829; cytosol" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER046W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; date=20020429" ; primary_name "mug65" ; product "spore wall assembly protein (predicted)" ;
chromosome1 GeneDB mRNA 4674575 4675126 . + . mRNA SPAC144.11 ; systematic_id "SPAC144.11" ; colour "7" ; gene "rps1102 ||| rps11-2 ||| rps11 ||| SPAC144.11" ; Alias "rps1102" ; synonym "rps11-2 ||| rps11" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR025W and YBR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1102" ; product "40S ribosomal protein S11 (predicted)" ;
chromosome1 GeneDB mRNA 4328953 4330665 . + . mRNA SPAC27F1.07 ; systematic_id "SPAC27F1.07" ; colour "7" ; db_xref "SPD:21/21A01" ; Alias "ost1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=human RPN1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation" ; primary_name "ost1" ; product "dolichyl-diphospho-oligosaccharide-protein glycosyltransferase Ost1 (predicted)" ; EC_number "2.4.1.119" ;
chromosome1 GeneDB mRNA 5113916 5116606 . - . mRNA SPAC29A4.16 ; systematic_id "SPAC29A4.16" ; colour "2" ; gene "hal4 ||| sat4 ||| ppk10 ||| SPAC29A4.16" ; Alias "hal4" ; db_xref "SPD:26/26F07" ; synonym "sat4 ||| ppk10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YCR008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005524; ATP binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0030003; cation homeostasis
GO:0030003; cellular cation homeostasis
GO:0019725; cellular homeostasis
GO:0006468; protein amino acid phosphorylation
GO:0042391; regulation of membrane potential
GO:0071473; cellular response to cation stress
GO:0071473; cellular response to cation stress
GO:0042493; response to drug
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "hal4" ; product "halotolerence protein 4" ;
chromosome1 GeneDB mRNA 3162172 3163101 . - . mRNA SPAC3G9.17 ; Alias "new8" ; systematic_id "SPAC3G9.17" ; GO "GO:0008897; holo-[acyl-carrier-protein] synthase activy
GO:0018070; peptidyl-serine phosphopantetheinylation" ; controlled_curation "term=conserved in Fungi; date=20090721 ||| term=no apparent S. cerevisiae ortholog; date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=phenotype, growth defect, slow growth; qualifier=deletion; db_xref=PMID:21270388; date=20110131" ; colour "7" ; primary_name "new8" ; product "holo-[acyl-carrier-protein] synthase (predicted)" ; note "absence from S. cerevisiae and involvement in phosphopantotheonine attachment suggest a role in siderophore /ferrichrome biosynthesis in the same pathway as sib1 and sib2, alternatively YPL148C (PPT2) could be the S. cerevisiae ortholog (this is the only S. cerevisiae ACPS domain protein without a pombe ortholog)" ;
chromosome1 GeneDB mRNA 1688787 1690107 . - . mRNA SPAC824.03c ; db_xref "SPD:09/09A06" ; systematic_id "SPAC824.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR305W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC824.03c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 5226278 5229747 . - . mRNA SPAC14C4.02c ; systematic_id "SPAC14C4.02c" ; colour "2" ; gene "smc5 ||| SPAC14C4.02c" ; Alias "smc5" ; db_xref "SPD:30/30C03" ; synonym "spr18" ; controlled_curation "term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YOL034W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10747036; date=20100727" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0005634; nucleus
GO:0046982; protein heterodimerization activity
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0048478; replication fork protection
GO:0005524; ATP binding" ; primary_name "smc5" ; product "Smc5-6 complex SMC subunit Smc5" ;
chromosome1 GeneDB mRNA 4113815 4117202 . - . mRNA SPAC23A1.19c ; systematic_id "SPAC23A1.19c" ; colour "7" ; gene "SPAC23A1.19c ||| SPAC26H5.01c" ; db_xref "SPD:48/48C02" ; synonym "SPAC26H5.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RecQ family; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDR291W; date=19700101 ||| term=human RECQL4 ortholog; qualifier=predicted; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, Rothmund- Thomsom syndrome; date=20100820 ||| term=disease associated, RAPADILINO syndrome; date=20100820 ||| term=disease associated, cancer; date=20100820 ||| term=disease associated, ageing; date=20100820" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0043140; ATP-dependent 3'-5' DNA helicase activity
GO:0000739; DNA strand annealing activity
GO:0000405; bubble DNA binding
GO:0000733; DNA strand renaturation
GO:0000731; DNA synthesis involved in DNA repair" ; product "RecQ type DNA helicase Hrq1 (predicted)" ;
chromosome1 GeneDB mRNA 3947912 3949019 . - . mRNA SPAC2F3.12c ; systematic_id "SPAC2F3.12c" ; colour "7" ; gene "SPAC2F3.12c ||| plp1" ; Alias "plp1" ; obsolete_name "SPAC2F3.17c" ; db_xref "SPD:52/52A09" ; GO "GO:0006457; protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR183W; date=19700101 ||| term=human TXNDC9 ortholog; date=20080428 ||| term=thioredoxin family; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=thioredoxin family; date=20090410 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, new gene; date=20020631 ||| term=warning, gene structure updated; date=20020631" ; primary_name "plp1" ; product "thioredoxin fold protein Plp1 (predicted)" ;
chromosome1 GeneDB mRNA 4734854 4737491 . + . mRNA SPAC458.03 ; systematic_id "SPAC458.03" ; colour "2" ; gene "SPAC458.03 ||| tel2" ; Alias "tel2" ; db_xref "SPD:38/38F04" ; GO "GO:0031931; TORC 1 complex
GO:0031932; TORC 2 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0031929; TOR signaling pathway
GO:0009650; UV protection
GO:0001934; positive regulation of protein amino acid phosphorylation
GO:0033261; regulation of progression through S phase
GO:0043111; replication fork blocking
GO:0007004; telomere maintenance via telomerase
GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR099W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17189249; date=20071004 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tel2" ; product "Tel2/Rad-5/Clk-2 family protein Tel2" ;
chromosome1 GeneDB mRNA 5489181 5491437 . - . mRNA SPAC869.11 ; systematic_id "SPAC869.11" ; colour "2" ; gene "cat1 ||| SPAC869.11 ||| SPAC922.08c" ; Alias "cat1" ; db_xref "SPD:35/35H10" ; synonym "SPAC922.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:18219492; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=complementation, functionally complements S. cerevisiae CAN1; db_xref=PMID:18219492; date=20101012" ; GO "GO:0005887; integral to plasma membrane
GO:0015189; L-lysine transmembrane transporter activity
GO:0015181; arginine transmembrane transporter activity
GO:0015181; arginine transmembrane transporter activity
GO:0043091; L-arginine import
GO:0034226; lysine import
GO:0003333; amino acid transmembbrane transport" ; primary_name "cat1" ; product "cationic amino acid transporter Cat1" ;
chromosome1 GeneDB mRNA 2598266 2599970 . + . mRNA SPAC823.11 ; db_xref "SPD:20/20G06" ; systematic_id "SPAC823.11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR053C and YJL134W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0030148; sphingolipid biosynthesis" ; gene "SPAC823.11" ; product "sphingosine-1-phosphate phosphatase (predicted)" ;
chromosome1 GeneDB mRNA 1255497 1256377 . + . mRNA SPAC56E4.05 ; systematic_id "SPAC56E4.05" ; colour "10" ; gene "SPAC56E4.05 ||| mug69" ; db_xref "SPD:07/07C10" ; Alias "mug69" ; GO "GO:0016020; membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR065C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug69" ; product "ENV10 family protein (predicted)" ;
chromosome1 GeneDB mRNA 4690144 4691628 . + . mRNA SPAC144.18 ; systematic_id "SPAC144.18" ; colour "7" ; db_xref "SPD:15/15G03" ; Alias "vrg4" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER039C and YGL225W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SLC34D1 and SLC34D2 ortholog; date=20091106 ||| term=disease associated, Schneckenbecken dysplasia; date=20091106 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0005338; nucleotide-sugar transporter activity
GO:0015780; nucleotide-sugar transport
GO:0006487; protein amino acid N-linked glycosylation
GO:0005794; Golgi apparatus" ; primary_name "vrg4" ; product "Golgi GDP-mannose transporter Vrg4 (predicted)" ;
chromosome1 GeneDB mRNA 4716570 4717636 . + . mRNA SPAC1834.09 ; systematic_id "SPAC1834.09" ; colour "10" ; gene "SPAC1834.09 ||| mug51" ; db_xref "SPD:43/43E12" ; Alias "mug51" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Vertebrates; date=20100513 ||| term=species distribution, conserved in Metazoa; date=20100513 ||| term=species distribution, conserved in Eukaryotes only; date=20100513" ; primary_name "mug51" ; product "variant protein kinase 19 family protein" ;
chromosome1 GeneDB mRNA 3562948 3566829 . - . mRNA SPAC17A2.06c ; systematic_id "SPAC17A2.06c" ; colour "7" ; gene "vps8 ||| SPAC17A2.06c" ; Alias "vps8" ; db_xref "SPD:39/39C10" ; GO "GO:0045324; late endosome to vacuole transport
GO:0016567; protein ubiquitination
GO:0033263; CORVET complex
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YAL002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps8" ; product "WD repeat protein Vps8 (predicted)" ;
chromosome1 GeneDB mRNA 1767787 1768593 . + . mRNA SPAC17A5.08 ; db_xref "SPD:07/07C03" ; systematic_id "SPAC17A5.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL007C and YOR016C and YDL018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle" ; gene "SPAC17A5.08" ; product "COPII-coated vesicle component Erp2/3/4 (predicted)" ;
chromosome1 GeneDB mRNA 5564211 5564651 . - . mRNA SPAC750.04c ; systematic_id "SPAC750.04c" ; controlled_curation "term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPAC750.04c" ; product "S. pombe specific 5Tm protein family" ;
chromosome1 GeneDB mRNA 3969009 3969527 . + . mRNA SPAC11G7.04 ; Alias "ubi1" ; systematic_id "SPAC11G7.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ribosomal-ubiquitin fusion protein; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL148W and YKR094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis and assembly
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; protein biosynthesis
GO:0016567; protein ubiquitination" ; gene "ubi1 ||| SPAC11G7.04" ; primary_name "ubi1" ; product "ribosomal-ubiquitin fusion protein Ubi1 (predicted)" ;
chromosome1 GeneDB mRNA 870772 872695 . + . mRNA SPAC23G3.03 ; systematic_id "SPAC23G3.03" ; colour "2" ; gene "sib2 ||| SPAC23G3.03" ; Alias "sib2" ; db_xref "SPD:32/32G08" ; GO "GO:0031169; ferrichrome biosynthesis
GO:0031172; ornithine N5-monooxygenase activity
GO:0006879; iron ion homeostasis
GO:0050660; FAD binding
GO:0050661; NADP binding
GO:0033214; iron assimilation by chelation and transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=genome organization, divergently orientated to functionally related gene; cv=genome_org; db_xref=PMID:15689108; date=20061027 ||| term=gene expression, co-transcribed with divergently orientated functionally related gene; db_xref=PMID:15689108; date=20061027 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=species distribution, conserved in Eukaryotes; date=20070115" ; primary_name "sib2" ; product "ornithine N5 monooxygenase (predicted)" ; EC_number "1.14.13.-" ;
chromosome1 GeneDB mRNA 196090 198715 . - . mRNA SPAC13G6.12c ; systematic_id "SPAC13G6.12c" ; colour "2" ; gene "chs1 ||| SPAC13G6.12c ||| SPAC24B11.01c" ; Alias "chs1" ; db_xref "SPD:38/38F11" ; synonym "SPAC24B11.01c" ; GO "GO:0004100; chitin synthase activity
GO:0034217; spore wall chitin biosynthetic process
GO:0030476; spore wall assembly (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)
GO:0005887; integral to plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15277753; date=19700101 ||| term=orthologous to S. cerevisiae YBR038W and YNL192W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "chs1" ; product "chitin synthase I" ; EC_number "2.4.1.16" ;
chromosome1 GeneDB mRNA 1530055 1531115 . + . mRNA SPAC57A7.07c ; db_xref "SPD:43/43F02" ; systematic_id "SPAC57A7.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL062C and YPL273W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0008898; homocysteine S-methyltransferase activity
GO:0000096; sulfur amino acid metabolism
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC57A7.07c" ; product "homocysteine methyltransferase (predicted)" ; EC_number "2.1.1.10" ;
chromosome1 GeneDB mRNA 4553904 4555164 . + . mRNA SPAC637.08 ; db_xref "SPD:13/13D10" ; systematic_id "SPAC637.08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YGL091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "7" ; GO "GO:0016226; iron-sulfur cluster assembly
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0016887; ATPase activity
GO:0051539; 4 iron, 4 sulfur cluster binding
GO:0005524; ATPase binding" ; gene "SPAC637.08" ; product "iron-sulfur cluster assembly ATPase Nbp35 (predicted)" ;
chromosome1 GeneDB mRNA 2869691 2871451 . - . mRNA SPAC8F11.10c ; systematic_id "SPAC8F11.10c" ; colour "2" ; gene "pvg1 ||| SPAC8F11.10c ||| SPACUNK4.18" ; Alias "pvg1" ; db_xref "SPD:22/22B02" ; synonym "SPACUNK4.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Bacteria; date=19700101 ||| term=warning, possible horizontal transfer; date=20100820" ; GO "GO:0051072; 4,6-pyruvylated galactose residue biosynthesis
cell wall biosynthesis (sensu Fungi); GO:0009272; GO:0009272
GO:0046919; pyruvyltransferase activity
GO:0009898; internal side of plasma membrane" ; primary_name "pvg1" ; product "pyruvyltransferase Pvg1" ;
chromosome1 GeneDB mRNA 5470914 5471350 . + . mRNA SPAC1039.10 ; systematic_id "SPAC1039.10" ; colour "10" ; gene "mmf2 ||| hpm1 ||| SPAC1039.10 ||| SPAC922.01" ; Alias "mmf2" ; db_xref "SPD:03/03G02" ; synonym "hpm1 ||| SPAC922.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER057C and YIL051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human HRSP12 ortholog; date=20100718" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0009097; isoleucine biosynthetic process" ; primary_name "mmf2" ; product "homologous Pmf1 factor 1, implicated in isoleucine biosynthesis (predicted)" ;
chromosome1 GeneDB mRNA 3220849 3222141 . - . mRNA SPAC6G10.04c ; db_xref "SPD:16/16H06" ; systematic_id "SPAC6G10.04c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0000278; regulation of mitotic cell cycle
GO:0043161; proteasomal ubiquitin-dependent protein catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR314W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC6G10.04c" ; product "20S proteasome component alpha 6 subunit Pre5 (predicted)" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB mRNA 2837121 2841809 . - . mRNA SPAC3F10.11c ; systematic_id "SPAC3F10.11c" ; colour "2" ; gene "SPAC3F10.11c ||| abc2" ; Alias "abc2" ; db_xref "SPD:48/48G05" ; GO "GO:0000329; vacuolar membrane
GO:0071997; glutathione S-conjugate-transporting ATPase activity
GO:0071992; phytochelatin transmembrane transporter
GO:0071276; cellular response to cadmium ion
GO:0071996; glutathione import into vacuole
GO:0071995; phytochelatin import into vacuole" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=MDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YLL048C and YDR135C and YLL015W and YHL035C and YGR281W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "abc2" ; product "glutathione S-conjugate-exporting ATPase Abc2" ;
chromosome1 GeneDB mRNA 4015037 4016557 . + . mRNA SPAC27E2.05 ; systematic_id "SPAC27E2.05" ; colour "2" ; gene "cdc1 ||| mis1 ||| SPAC27E2.05" ; Alias "cdc1" ; db_xref "SPD:23/23B11" ; synonym "mis1" ; controlled_curation "term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:958201; qualifier=ts; date=20100705 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:8887553; date=20100630 ||| term=orthologous to S. cerevisiae YJR006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0043625; delta DNA polymerase complex
GO:0006271; DNA strand elongation
GO:0000731; DNA synthesis during DNA repair
GO:0003887; DNA-directed DNA polymerase activity
GO:0043596; nuclear replication fork
GO:0008408; 3'-5' exonuclease activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000723; telomere maintenance
GO:0043137; DNA replication, removal of RNA primer
GO:0005515; protein binding
GO:0007346; regulation of mitotic cell cycle" ; primary_name "cdc1" ; product "DNA polymerase delta small subunit Cdc1" ; EC_number "2.7.7.7" ;
chromosome1 GeneDB mRNA 1907300 1911700 . + . mRNA SPAC110.01 ; systematic_id "SPAC110.01" ; colour "7" ; gene "ppk1 ||| SPAC140.05 ||| SPAC110.01" ; Alias "ppk1" ; db_xref "SPD:49/49F07" ; synonym "SPAC140.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YOR233W and YPL141C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation" ; primary_name "ppk1" ; product "serine/threonine protein kinase Ppk1 (predicted)" ;
chromosome1 GeneDB mRNA 3211850 3214432 . + . mRNA SPAC1486.10 ; systematic_id "SPAC1486.10" ; colour "2" ; gene "thi1 ||| ntf1 ||| SPAC1486.10 ||| SPAC6G10.01" ; Alias "thi1" ; db_xref "SPD:28/28D02" ; synonym "ntf1 ||| SPAC6G10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; db_xref=PMID:8163491; date=20060804 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=20060804 ||| term=gene expression, transcriptionally regulates nmt1; db_xref=PMID:8163491; cv=gene_ex; date=20060804 ||| term=similar to S. pombe SPAC3C7.04 and SPBP8B7.30c and SPCC417.09C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulates genes involved in thiamin biosynthesis; cv=gene_ex; date=20071202 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0008270; zinc ion binding
GO:0031139; positive regulation of conjugation with cellular fusion
GO:0034307; regulation of ascospore formation
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0006355; regulation of transcription, DNA- dependent" ; primary_name "thi1" ; product "transcription factor Thi1" ;
chromosome1 GeneDB mRNA 3297520 3299904 . - . mRNA SPAPB1E7.06c ; systematic_id "SPAPB1E7.06c" ; colour "2" ; gene "eme1 ||| SPAPB1E7.06c" ; Alias "eme1" ; synonym "mms4 ||| slx2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA damage checkpoint defects, S-phase ; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=orthologous to S. cerevisiae YBR098W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006281; DNA repair
GO:0007131; meiotic recombination
GO:0031297; collapsed replication fork processing
GO:0048476; Holliday junction resolvase complex
GO:0008821; crossover junction endodeoxyribonuclease activity
GO:0005634; nucleus
GO:0000709; meiotic joint molecule formation
GO:0031573; intra-S DNA damage checkpoint" ; primary_name "eme1" ; product "Holliday junction resolvase subunit Eme1" ; EC_number "3.1.22.4" ;
chromosome1 GeneDB mRNA 1322266 1324520 . - . mRNA SPAC6F12.08c ; db_xref "SPD:46/46A12" ; systematic_id "SPAC6F12.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR102C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human EXOC8 ortholog; date=20100923" ; colour "7" ; GO "GO:0000145; exocyst
GO:0006887; exocytosis" ; gene "SPAC6F12.08c" ; product "exocyst complex subunit Exo84 (predicted)" ;
chromosome1 GeneDB mRNA 1465847 1469848 . + . mRNA SPAC9.04 ; Alias "Tf2-1" ; systematic_id "SPAC9.04" ; colour "4" ; controlled_curation "term=tf2-type transposon; date=19700101" ; GO "GO:0005634; nucleus" ; gene "Tf2-1 ||| SPAC9.04" ; primary_name "Tf2-1" ; product "retrotransposable element" ;
chromosome1 GeneDB mRNA 1721953 1724813 . + . mRNA SPAC664.10 ; systematic_id "SPAC664.10" ; colour "2" ; gene "klp2 ||| SPAC664.10" ; note "first exon possibly incorrect; may use MKLNFSNTLQYPHVFGEKEK as alternative first exon" ; Alias "klp2" ; db_xref "SPD:29/29A08" ; GO "GO:0005737; cytoplasm
GO:0000778; kinetochore
GO:0005875; microtubule associated complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0003777; microtubule motor activity
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0030951; establishment and/or maintenance of microtubule cytoskeleton polarity
GO:0000741; karyogamy
GO:0051012; microtubule sliding
GO:0031534; minus-end directed microtubule sliding
GO:0000022; mitotic spindle elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kinesin Kar3 subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11694582; date=19700101 ||| term=orthologous to S. cerevisiae YPR141C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201" ; primary_name "klp2" ; product "kinesin-like protein Klp2" ;
chromosome1 GeneDB mRNA 4834870 4835945 . - . mRNA SPAC4F10.03c ; db_xref "SPD:16/16F04" ; systematic_id "SPAC4F10.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0008175; tRNA methyltransferase activity
GO:0030488; tRNA methylation
GO:0006412; translation" ; gene "SPAC4F10.03c" ; product "tRNA 2'-O-ribose methyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 1827871 1829370 . - . mRNA SPAC1002.16c ; db_xref "SPD:24/24C10" ; systematic_id "SPAC1002.16c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR260W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0015663; nicotinamide mononucleotide permease activity
GO:0035353; nicotinamide mononucleotide transmembrane transport" ; gene "SPAC1002.16c" ; product "nicotinic acid plasma membrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 3687959 4878604 . + . mRNA SPAC15A10.17 ; Alias "coa2" ; synonym "new5" ; systematic_id "SPAC15A10.17" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0033617; mitochondrial respiratory chain complex IV assembly" ; controlled_curation "term=orthologous to S. cerevisiae YPL189C-A; date=20090716 ||| term=conserved in Fungi; date=20100427 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "coa2" ; product "cytochrome C oxidase assembly factor Coa2 (predicted)" ;
chromosome1 GeneDB mRNA 4838972 4840287 . + . mRNA SPAC4F10.06 ; db_xref "SPD:18/18D11" ; systematic_id "SPAC4F10.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005634; nucleus
GO:0042274; ribosome small subunit biogenesis
GO:0030686; 90S preribosome" ; gene "SPAC4F10.06" ; product "ribosome small subunit biogenesis protein, BUD22 family (predicted)" ;
chromosome1 GeneDB mRNA 4462987 4467663 . - . mRNA SPAC9E9.12c ; systematic_id "SPAC9E9.12c" ; colour "2" ; gene "ybt1 ||| abc1 ||| SPAC9E9.12c" ; Alias "ybt1" ; db_xref "SPD:48/48G02" ; synonym "abc1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=MDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797|PMID:9037770; date=20070216 ||| term=orthologous to S. cerevisiae YLL048C and YDR135C and YLL015W and YHL035C and YGR281W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=warning, gene name conflict; cv=warning; date=20100317" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005524; ATP binding
GO:0042626; ATPase activity, coupled to transmembrane movement of substances" ; primary_name "ybt1" ; product "ABC transporter Ybt1" ;
chromosome1 GeneDB mRNA 667875 669636 . + . mRNA SPAC1D4.13 ; systematic_id "SPAC1D4.13" ; colour "2" ; gene "byr1 ||| ste1 ||| ste3 ||| SPAC1D4.13" ; Alias "byr1" ; db_xref "SPD:15/15C10" ; synonym "ste1 ||| ste3" ; GO "GO:0032005; signal transduction during conjugation with cellular fusion
GO:0000751; cell cycle arrest in response to pheromone
GO:0004708; MAP kinase kinase activity
GO:0006995; cellular response to nitrogen starvation
GO:0005515; protein binding
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=phenotype, sterile; db_xref=PMID:3185514; date=20101013 ||| term=name description, STErile; db_xref=PMID:3185514; date=20101013" ; primary_name "byr1" ; product "MAP kinase kinase Byr1" ; EC_number "2.7.1.-" ;
chromosome1 GeneDB mRNA 2029143 2030361 . - . mRNA SPAC17H9.14c ; db_xref "SPD:16/16G04" ; systematic_id "SPAC17H9.14c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YOL088C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0015035; protein disulfide oxidoreductase activity
GO:0003756; protein disulfide isomerase activity
GO:0005783; endoplasmic reticulum
GO:0006457; protein folding
GO:0034599; cellular response to oxidative stress" ; gene "SPAC17H9.14c" ; product "protein disulfide isomerase" ; EC_number "5.3.4.1" ;
chromosome1 GeneDB mRNA 1957462 1961475 . + . mRNA SPAC3H1.11 ; systematic_id "SPAC3H1.11" ; colour "2" ; gene "hsr1 ||| SPAC3H1.11" ; Alias "hsr1" ; db_xref "SPD:36/36A04" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0043619; regulation of transcription from RNA polymerase II promoter in response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20061206 ||| term=zf-C2H2 type; date=20070129 ||| term=orthologous to S. cerevisiae YER130C and YMR037C and YKL062W; date=19700101 ||| term=gene expression, transcriptionally regulated by Pap1; evidence=IEP; db_xref=PMID:18003976; cv=gene_ex; date=20080512 ||| term=gene expression, transcriptionally regulated by Prr1; evidence=IEP; db_xref=PMID:18003976; cv=gene_ex; date=20080512 ||| term=gene expression, transcriptionally regulated by Atf1; evidence=IEP; db_xref=PMID:18003976; date=20080512 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "hsr1" ; product "transcription factor Hsr1" ;
chromosome1 GeneDB mRNA 2775258 2776907 . - . mRNA SPAC1805.03c ; systematic_id "SPAC1805.03c" ; colour "7" ; gene "trm13 ||| SPAC1805.03c" ; note "first intron may be incorrect" ; Alias "trm13" ; db_xref "SPD:25/25A04" ; GO "GO:0008175; tRNA methyltransferase activity
GO:0030488; tRNA methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "trm13" ; product "tRNA 2'-O-methyltransferase Trm13 (predicted)" ;
chromosome1 GeneDB mRNA 2278221 2279377 . - . mRNA SPAC4G9.13c ; systematic_id "SPAC4G9.13c" ; colour "2" ; gene "vps26 ||| pep8 ||| SPAC4G9.13c" ; Alias "vps26" ; db_xref "SPD:14/14D12" ; synonym "pep8" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL053W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030904; retromer complex
GO:0030904; retromer complex
GO:0006886; intracellular protein transport
GO:0030437; sporulation (sensu Fungi)
GO:0016787; hydrolase activity
GO:0042147; retrograde transport, endosome to Golgi
GO:0005768; endosome
GO:0005768; endosome" ; primary_name "vps26" ; product "retromer complex subunit Vps26" ;
chromosome1 GeneDB mRNA 1856893 1860663 . - . mRNA SPAP11E10.02c ; systematic_id "SPAP11E10.02c" ; colour "2" ; gene "mam3 ||| SPAP11E10.02c ||| SPAPB1A10.01c" ; Alias "mam3" ; synonym "SPAPB1A10.01c" ; GO "GO:0009986; cell surface
GO:0000752; agglutination during conjugation with cellular fusion
GO:0010339; external side of cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20071106 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; primary_name "mam3" ; product "cell agglutination protein Mam3" ;
chromosome1 GeneDB mRNA 1297186 1299711 . + . mRNA SPAC1565.05 ; db_xref "SPD:28/28C09" ; systematic_id "SPAC1565.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1565.05" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1473692 1474539 . - . mRNA SPAC9.06c ; db_xref "SPD:11/11A08" ; systematic_id "SPAC9.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0046570; methylthioribulose-1-phosphate dehydratase activity
GO:0019509; L-methionine salvage from methylthioadenosine" ; gene "SPAC9.06c" ; product "5'-methylthioribulose-1-phosphate dehydratase, adducin (predicted)" ;
chromosome1 GeneDB mRNA 2192092 2193631 . - . mRNA SPAC1783.04c ; systematic_id "SPAC1783.04c" ; colour "2" ; gene "hst4 ||| SPAC1783.04c" ; Alias "hst4" ; db_xref "SPD:21/21C06" ; GO "GO:0000790; nuclear chromatin
GO:0016585; chromatin remodeling complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0017136; NAD-dependent histone deacetylase activity
GO:0016566; specific transcriptional repressor activity
GO:0003714; transcription corepressor activity
; DNA damage checkpoint
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0006348; chromatin silencing at telomere
GO:0071572; histone H3-K56 deactylation
GO:0016575; histone deacetylation
GO:0000070; mitotic sister chromatid segregation
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0060303; regulation of nucleosome density
GO:0006974; response to DNA damage stimulus
GO:2000283; negative regulation of cellular amino acid biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth defect, slow growth; cv=phenotype; db_xref=PMID:10512858; date=20091221 ||| term=phenotype, DNA fragmentation; cv=phenotype; db_xref=PMID:18344406; date=20091221 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|low_penetrance; cv=phenotype; db_xref=PMID:10512858; date=20091221 ||| term=phenotype, chromosome segregation defects, chromosome loss; cv=phenotype; db_xref=PMID:10512858; date=20091221 ||| term=phenotype, sensitive to MMS; cv=phenotype; db_xref=PMID:18344406; date=20091221 ||| term=phenotype, DNA damage checkpoint defects; cv=phenotype; db_xref=PMID:18344406; date=20091221 ||| term=orthologous to S. cerevisiae YDR191W and YOR025W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, cell cycle regulated; cv=gene_ex; db_xref=PMID:18344406; date=20091221" ; primary_name "hst4" ; product "Sir2 family histone deacetylase Hst4" ;
chromosome1 GeneDB mRNA 4640583 4642286 . - . mRNA SPAC30C2.06c ; systematic_id "SPAC30C2.06c" ; colour "7" ; gene "dml1 ||| SPAC30C2.06c" ; Alias "dml1" ; db_xref "SPD:44/44E02" ; GO "GO:0005737; cytoplasm
GO:0005741; mitochondrial outer membrane
GO:0005739; mitochondrion
GO:0005198; GTPase activity
GO:0000002; mitochondrial genome maintenance
GO:0000001; mitochondrion inheritance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR211W; date=19700101 ||| term=human Misato ortholog; date=20071123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "dml1" ; product "mitochondrial inheritance GTPase (predicted)" ;
chromosome1 GeneDB mRNA 182500 186242 . - . mRNA SPAC13G6.06c ; systematic_id "SPAC13G6.06c" ; colour "7" ; gene "SPAC13G6.06c ||| gcv2" ; Alias "gcv2" ; db_xref "KEGG:MAP00260; ||| SPD:29/29H09" ; GO "GO:0005960; glycine cleavage complex
GO:0005739; mitochondrion
GO:0004375; glycine dehydrogenase (decarboxylating) activity
GO:0019464; glycine decarboxylation via glycine cleavage system" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hyperglycinemia; date=20060920 ||| term=orthologous to S. cerevisiae YMR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gcv2" ; product "glycine cleavage complex subunit P (predicted)" ; EC_number "1.4.4.2" ;
chromosome1 GeneDB mRNA 1601508 1602933 . - . mRNA SPAC23H4.04 ; db_xref "SPD:21/21D02" ; systematic_id "SPAC23H4.04" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL033C; date=19700101 ||| term=disease associated, epilepsy; date=20070822 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004808; tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase activity
GO:0005739; mitochondrion
GO:0008033; tRNA modification
GO:0032543; mitochondrial translation" ; gene "SPAC23H4.04" ; product "mitochondrialtRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase(predicted)" ; EC_number "2.1.1.61" ;
chromosome1 GeneDB mRNA 4477511 4478830 . + . mRNA SPAC17C9.13c ; systematic_id "SPAC17C9.13c" ; colour "2" ; gene "cut8 ||| SPAC17C9.13c" ; Alias "cut8" ; db_xref "SPD:09/09H07" ; GO "GO:0031965; nuclear membrane
GO:0005634; nucleus
GO:0031593; polyubiquitin binding
GO:0043495; protein anchor
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0000070; mitotic sister chromatid segregation
GO:0030071; fregulation of mitotic metaphase/anaphase transition
GO:0007052; mitotic spindle organization
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0031144; proteasome localization
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11084332; date=19700101 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=orthologous to S. cerevisiae YIR011C; date=19700101 ||| term=target of proteasome; db_xref=PMID:16096059; date=19700101 ||| term=target of Rhp6; db_xref=PMID:16096059; date=19700101 ||| term=target of Rhp18; db_xref=PMID:16096059; date=19700101 ||| term=target of Ubr1; db_xref=PMID:16096059; date=19700101 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "cut8" ; product "tethering factor for nuclear proteasome Cut8" ;
chromosome1 GeneDB mRNA 3352377 3356226 . + . mRNA SPAC26A3.10 ; systematic_id "SPAC26A3.10" ; colour "7" ; gene "SPAC26A3.10 ||| cnt6" ; note "SPAC26A3.09c and SPAC26A3.10 are convergent and very close, functionally related, perhaps co-regulated?" ; Alias "cnt6" ; db_xref "SPD:30/30A07" ; GO "GO:0005096; GTPase activator activity
GO:0043087; regulation of GTPase activity
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=similar to S. pombe SPBC17G9.08c; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=centaurin ADOP ribosylation factor GTPase activating protein family; date=20090108" ; primary_name "cnt6" ; product "centaurin ADOP ribosylation factor GTPase activating protein family (predicted)" ;
chromosome1 GeneDB mRNA 5287180 5288102 . - . mRNA SPAC11E3.04c ; systematic_id "SPAC11E3.04c" ; colour "2" ; gene "ubc13 ||| spu13 ||| SPAC11E3.04c" ; Alias "ubc13" ; db_xref "SPD:52/52A04" ; synonym "spu13" ; GO "GO:0004842; ubiquitin conjugating enzyme activity
GO:0016567; protein ubiquitination
GO:0006301; postreplication repair
GO:0005515; protein binding
GO:0042803; protein homodimerization activity" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ubc13" ; product "ubiquitin conjugating enzyme Ubc13" ; EC_number "6.3.2.19" ;
chromosome1 GeneDB mRNA 5191144 5195145 . - . mRNA SPAC13D1.01c ; Alias "Tf2-7" ; systematic_id "SPAC13D1.01c" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "Tf2-7 ||| SPAC13D1.01c" ; primary_name "Tf2-7" ; product "retrotransposable element" ;
chromosome1 GeneDB mRNA 2792839 2793476 . - . mRNA SPAC1805.11c ; systematic_id "SPAC1805.11c" ; colour "7" ; gene "rps2602 ||| rps26-2 ||| SPAC1805.11c" ; Alias "rps2602" ; db_xref "SPD:04/04B03" ; synonym "rps26-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL189C and YER131W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps2602" ; product "40S ribosomal protein S26 (predicted)" ;
chromosome1 GeneDB mRNA 2138064 2139438 . - . mRNA SPAC23C11.04c ; systematic_id "SPAC23C11.04c" ; colour "2" ; gene "pnk1 ||| SPAC23C11.04c" ; Alias "pnk1" ; db_xref "SPD:21/21C11" ; GO "GO:0005634; nucleus
GO:0046404; ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0000718; nucleotide-excision repair, DNA damage removal
GO:0046403; polynucleotide 3'-phosphatase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR156C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pnk1" ; product "DNA kinase/phosphatase Pnk1" ; EC_number "3.1.3.32 ||| 2.7.1.78" ;
chromosome1 GeneDB mRNA 3604059 3605487 . + . mRNA SPAC17G6.09 ; systematic_id "SPAC17G6.09" ; colour "7" ; gene "sec62 ||| SPAC17G6.09" ; Alias "sec62" ; db_xref "SPD:10/10F01" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006620; posttranslational protein targeting to membrane
GO:0031207; Sec62/Sec63 complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec62" ; product "ER protein translocation subcomplex subunit Sec62 (predicted)" ;
chromosome1 GeneDB mRNA 3239354 3241160 . - . mRNA SPAC6G10.12c ; systematic_id "SPAC6G10.12c" ; colour "2" ; gene "ace2 ||| SPAC6G10.12c" ; Alias "ace2" ; db_xref "SPD:25/25F09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000920; cell separation during cytokinesis
GO:0045896; regulation of transcription, mitotic
GO:0045896; regulation of transcription, mitotic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, ubiquitinated; cv=pt_mod; date=20060818 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates adg1; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates adg2; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates adg3; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates eng1; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates agn1; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates rgf3; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates mid2; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates chr1; cv=gene_ex; date=20060818 ||| term=gene expression, transcriptionally regulates cfh4; cv=gene_ex; date=20100302 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YLR131C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15195092; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:16317047; date=20090213 ||| term=gene expression, target genes transcriptionally co-regulated by Mcs6; db_xref=PMID:19328067; cv=gene_ex; date=20090712 ||| term=gene expression, target genes transcriptionally co-regulated by Cdk9; db_xref=PMID:19328067; cv=gene_ex; date=20090712 ||| term=DNA binding specificity, binds UAS 5'-CCAGCC-3'; cv=DNA_binding_specificity; date=20100302" ; primary_name "ace2" ; product "transcription factor Ace2" ;
chromosome1 GeneDB mRNA 1441967 1443128 . - . mRNA SPAC3A12.13c ; db_xref "SPD:11/11F11" ; systematic_id "SPAC3A12.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR192C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "2" ; GO "GO:0019843; rRNA binding
GO:0003743; translation initiation factor activity
GO:0030490; processing of 20S pre-rRNA
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0006412; translation
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex" ; gene "SPAC3A12.13c" ; product "translation initiation factor eIF3j (p35)" ;
chromosome1 GeneDB mRNA 3925751 3927292 . - . mRNA SPAC2F3.03c ; systematic_id "SPAC2F3.03c" ; colour "7" ; gene "rpa49 ||| rpa51 ||| SPAC2F3.03c" ; Alias "rpa49" ; db_xref "SPD:20/20D11" ; synonym "rpa51" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0006360; transcription from RNA polymerase I promoter
GO:0005736; DNA-directed RNA polymerase I complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL248C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpa49" ; product "DNA-directed RNA polymerase I complex subunit Rpa49 (predicted)" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB mRNA 1770131 1770865 . + . mRNA SPAC17A5.10 ; db_xref "SPD:07/07G08" ; systematic_id "SPAC17A5.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR268C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC17A5.10" ; product "conserved fungal protein" ; note "possily DNAJ needs checking**" ;
chromosome1 GeneDB mRNA 5067551 5069307 . + . mRNA SPAC1006.01 ; systematic_id "SPAC1006.01" ; colour "2" ; gene "psp3 ||| SPAC1006.01" ; Alias "psp3" ; db_xref "SPD:21/21A07" ; GO "GO:0007039; vacuolar protein catabolic process
GO:0000328; fungal-type vacuole lumen
GO:0004252; serine-type endopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=name description, Protease S. Pombe; db_xref=PMID:11115118; date=20100606" ; primary_name "psp3" ; product "vacuolar serine protease Psp3 (predicted)" ; EC_number "3.4.24.-" ;
chromosome1 GeneDB mRNA 3824487 3825927 . - . mRNA SPAC4H3.02c ; systematic_id "SPAC4H3.02c" ; colour "2" ; gene "SPAC4H3.02c ||| swc3" ; db_xref "SPD:19/19F06" ; Alias "swc3" ; GO "GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL011W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "swc3" ; product "Swr1 complex subunit Swc3" ;
chromosome1 GeneDB mRNA 91915 93871 . - . mRNA SPAC1F8.04c ; db_xref "SPD:21/21E05" ; systematic_id "SPAC1F8.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPAC1F8.04c" ; product "hydrolase (predicted)" ;
chromosome1 GeneDB mRNA 3939665 3942029 . + . mRNA SPAC2F3.09 ; systematic_id "SPAC2F3.09" ; colour "7" ; gene "SPAC2F3.09 ||| hem1" ; Alias "hem1" ; db_xref "KEGG:MAP00260; ||| SPD:35/35B01" ; GO "GO:0006783; heme biosynthesis
GO:0003870; 5-aminolevulinate synthase activity
GO:0005759; mitochondrial matrix
GO:0008483; transaminase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR232W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hem1" ; product "5-aminolevulinate synthase (predicted)" ; EC_number "2.3.1.37" ; reserved_name "hem1" ;
chromosome1 GeneDB mRNA 1162217 1162655 . - . mRNA SPAC22A12.04c ; systematic_id "SPAC22A12.04c" ; colour "7" ; gene "rps2201 ||| rps22-1 ||| rps15a-1 ||| SPAC22A12.04c" ; Alias "rps2201" ; db_xref "SPD:51/51B01" ; synonym "rps22-1 ||| rps15a-1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL190C and YLR367W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; primary_name "rps2201" ; product "40S ribosomal protein S15a (predicted)" ;
chromosome1 GeneDB mRNA 456950 459865 . - . mRNA SPAC24H6.13 ; db_xref "SPD:38/38F07" ; systematic_id "SPAC24H6.13" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL084W and YMR266W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0006893; Golgi to plasma membrane transport" ; gene "SPAC24H6.13" ; product "DUF221 family protein implicated in Golgi to plasma membrane transport (predicted)" ;
chromosome1 GeneDB mRNA 2989317 2990691 . + . mRNA SPAC31G5.01 ; systematic_id "SPAC31G5.01" ; colour "2" ; gene "sap49 ||| SPAPB1A11.05 ||| SPAC31G5.01" ; Alias "sap49" ; db_xref "SPD:50/50C03" ; synonym "SPAPB1A11.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YOR319W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0003723; RNA binding" ; primary_name "sap49" ; product "RNA-binding protein Sap49" ;
chromosome1 GeneDB mRNA 5341006 5343372 . - . mRNA SPAP8A3.13c ; systematic_id "SPAP8A3.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016192; vesicle mediated transport" ; colour "7" ; gene "SPAP8A3.13c" ; product "Vid24 family protein (predicted)" ;
chromosome1 GeneDB mRNA 1082474 1083391 . - . mRNA SPAC1A6.06c ; Alias "meu31" ; db_xref "SPD:42/42D08" ; systematic_id "SPAC1A6.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "meu31" ; product "sequence orphan Meu31" ;
chromosome1 GeneDB mRNA 904045 905132 . + . mRNA SPAC1687.02 ; db_xref "SPD:11/11F05" ; systematic_id "SPAC1687.02" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR274C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0004222; metalloendopeptidase activity
GO:0071586; CAAX-box protein processing
GO:0007323; peptide pheromone maturation" ; gene "SPAC1687.02" ; product "CAAX prenyl protease (predicted)" ; EC_number "3.4.22.-" ;
chromosome1 GeneDB mRNA 3441613 3442297 . - . mRNA SPAC3A11.13 ; db_xref "SPD:06/06F10" ; systematic_id "SPAC3A11.13" ; synonym "SPAC3H5.02" ; colour "7" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR200W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "prefoldin subunit 6 (predicted)" ;
chromosome1 GeneDB mRNA 3623742 3625170 . + . mRNA SPAC17G6.17 ; systematic_id "SPAC17G6.17" ; colour "2" ; gene "pof8 ||| SPAC17G6.17" ; note "Pof8 F-box is very degenerate, but is detectable by sequence similarty and confirmed by Skp1 binding assay PMID:15147268" ; Alias "pof8" ; db_xref "SPD:44/44A06" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0031146; SCF-dependent proteasomal ubiquitin- dependent protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; db_xref=PMID:15147268; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pof8" ; product "F-box protein Pof8" ;
chromosome1 GeneDB mRNA 3518894 3519812 . - . mRNA SPAC16E8.10c ; systematic_id "SPAC16E8.10c" ; colour "7" ; gene "SPAC16E8.10c" ; note "extended to include potential mitochondrial signal peptide 11-08-04" ; db_xref "SPD:10/10D08" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR113C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, gene structure updated; date=20041108" ; product "mitochondrial ribosomal protein subunit S7 (predicted)" ;
chromosome1 GeneDB mRNA 2414229 2415137 . - . mRNA SPAC6B12.03c ; db_xref "SPD:43/43E09" ; systematic_id "SPAC6B12.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=orthologous to S. cerevisiae YBR270C and YJL058C; date=20091107 ||| term=species distribution, conserved in Vertebrates; date=20091107 ||| term=species distribution, conserved in Metazoa; date=20091107 ||| term=species distribution, conserved in Eukaryotes only; date=20091107" ; colour "10" ; gene "SPAC6B12.03c" ; product "HbrB family protein" ;
chromosome1 GeneDB mRNA 4591855 4593567 . + . mRNA SPAC12B10.11 ; systematic_id "SPAC12B10.11" ; colour "2" ; gene "exg2 ||| SPAC12B10.11" ; Alias "exg2" ; db_xref "SPD:49/49B07" ; GO "GO:0004338; glucan 1,3-beta-glucosidase activity
GO:0046557; glucan endo-1,6-beta-glucosidase activity
GO:0016021; integral to membrane
GO:0008360; regulation of cell shape
GO:0008422; beta glucosidase activity
GO:0070880; fungal-type cell wall beta-glucan biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR190W and YLR300W and YDR261C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "exg2" ; product "glucan glucosidase Exg2, unknown specificity" ; EC_number "3.2.1.58" ;
chromosome1 GeneDB mRNA 3152121 3157288 . - . mRNA SPAC3G9.12 ; systematic_id "SPAC3G9.12" ; colour "2" ; gene "peg1 ||| SPAC3G9.12 ||| cls1" ; Alias "peg1" ; db_xref "SPD:30/30H09" ; synonym "cls1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, plus end tracking protein; cv=m_f_g; date=20060411 ||| term=HEAT repeat; date=20060411 ||| term=orthologous to S. cerevisiae YBL034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005875; microtubule associated complex
GO:0005876; spindle microtubule
GO:0051233; spindle midzone
GO:0005515; protein binding
GO:0005515; protein binding
GO:0007020; microtubule nucleation
GO:0090307; spindle assembly involved in mitosis
GO:0032932; negative regulation of astral microtubule depolymerization
GO:0032932; negative regulation of astral microtubule depolymerization
GO:0032932; negative regulation of astral microtubule depolymerization
GO:0032932; negative regulation of astral microtubule depolymerization
GO:0032932; negative regulation of astral microtubule depolymerization
GO:0007026; negative regulation of microtubule depolymerization" ; primary_name "peg1" ; product "CLASP family microtubule-associated protein" ;
chromosome1 GeneDB mRNA 2091521 2092942 . - . mRNA SPAC3C7.13c ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00480; ||| SPD:44/44E11" ; systematic_id "SPAC3C7.13c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, chronic non- spherocytic hemolytic anemia; date=20061122 ||| term=orthologous to S. cerevisiae YNL241C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009051; pentose-phosphate shunt, oxidative branch
GO:0051156; glucose 6-phosphate metabolic process
GO:0004345; glucose-6-phosphate 1-dehydrogenase activity
GO:0005737; cytoplasm" ; gene "SPAC3C7.13c" ; product "glucose-6-phosphate 1-dehydrogenase (predicted)" ; EC_number "1.1.1.49" ;
chromosome1 GeneDB mRNA 3499049 3503841 . + . mRNA SPAC16E8.01 ; systematic_id "SPAC16E8.01" ; colour "7" ; gene "shd1 ||| sla1 ||| SPAC16E8.01" ; Alias "shd1" ; db_xref "SPD:30/30G12" ; synonym "sla1" ; GO "GO:0006897; endocytosis
GO:0031505; cell wall organization and biogenesis
GO:0000147; actin cortical patch assembly
GO:0007015; actin filament organization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL007C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=name description, Sh3 Homology Domain; date=20100715" ; primary_name "shd1" ; product "cytoskeletal protein binding protein Sla1 family, Shd1 (predicted)" ; reserved_name "shd1" ;
chromosome1 GeneDB mRNA 5401951 5402233 . - . mRNA SPAC3G6.13c ; systematic_id "SPAC3G6.13c" ; colour "2" ; gene "rpl4101 ||| rpl41-1 ||| SPAC3G6.13c" ; Alias "rpl4101" ; db_xref "SPD:01/01A03" ; synonym "rpl41-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL184C and YDL133C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl4101" ; product "60S ribosomal protein L41" ;
chromosome1 GeneDB mRNA 18042 18557 . + . mRNA SPAC212.06c ; systematic_id "SPAC212.06c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC212.06c" ; product "pseudogene" ; note "term=truncated C terminal of DNA helicase in rearranged telomeric region" ;
chromosome1 GeneDB mRNA 4729848 4732053 . + . mRNA SPAC17D4.04 ; systematic_id "SPAC17D4.04" ; colour "7" ; gene "SPAC17D4.04 ||| SPAC458.01" ; db_xref "SPD:33/33F04" ; synonym "SPAC458.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016428; tRNA (cytosine-5-)-methyltransferase activity
GO:0030488; tRNA methylation
GO:0005634; nucleus" ; product "tRNA (cytosine-5-)-methyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 501334 502384 . - . mRNA SPAC227.02c ; db_xref "SPD:06/06H10" ; systematic_id "SPAC227.02c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0005634; nucleus" ; gene "SPAC227.02c" ; product "rRNA processing protein Rrp15 (predicted)" ;
chromosome1 GeneDB mRNA 2158659 2160086 . + . mRNA SPAC23C11.14 ; systematic_id "SPAC23C11.14" ; colour "2" ; gene "zhf1 ||| SPAC23C11.14" ; Alias "zhf1" ; db_xref "SPD:18/18D05" ; synonym "zhf" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR243C and YOR316C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006882; zinc ion homeostasis
GO:0006876; cadmium ion homeostasis
GO:0006877; cobalt ion homeostasis
GO:0005789; endoplasmic reticulum membrane
GO:0005385; zinc ion transporter activity
GO:0071577; zinc ion transmembrane transport" ; primary_name "zhf1" ; product "zinc ion transporter Zhf1" ;
chromosome1 GeneDB mRNA 1796091 1797963 . + . mRNA SPAC1610.04 ; systematic_id "SPAC1610.04" ; colour "2" ; gene "mug99 ||| SPAC1610.04" ; note "localization was additionally determined through the presence of CCCTCTC downstream sequence significantly overrepresented in mitochondrial proteins" ; Alias "mug99" ; db_xref "SPD:25/25D11" ; GO "GO:0045132; meiotic chromosome segregation
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug99" ; product "meiotically upregulated gene Mug99" ;
chromosome1 GeneDB mRNA 5026190 5027454 . - . mRNA SPAC22E12.05c ; systematic_id "SPAC22E12.05c" ; colour "7" ; gene "rer1 ||| SPAC22E12.05c" ; Alias "rer1" ; db_xref "SPD:06/06G09" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0000139; Golgi membrane
GO:0006886; intracellular protein transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0030137; COPI-coated vesicle
GO:0030134; ER to Golgi transport vesicle
GO:0006621; protein retention in ER" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rer1" ; product "Rer1 family protein (predicted)" ;
chromosome1 GeneDB mRNA 4804630 4806435 . - . mRNA SPAC22F8.10c ; systematic_id "SPAC22F8.10c" ; colour "7" ; gene "sap145 ||| SPAC22F8.10c" ; Alias "sap145" ; db_xref "SPD:36/36E05" ; GO "GO:0005686; snRNP U2
GO:0005681; spliceosome complex
GO:0003723; RNA binding
GO:0000245; spliceosome assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YMR240C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sap145" ; product "U2 snRNP-associated protein Sap145 (predicted)" ;
chromosome1 GeneDB mRNA 5181563 5182731 . - . mRNA SPAC26F1.02 ; systematic_id "SPAC26F1.02" ; colour "7" ; gene "SPAC26F1.02 ||| pnn1" ; Alias "pnn1" ; db_xref "SPD:09/09B08" ; GO "GO:0005634; nucleus
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosomal complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human PNN ortholog; date=20100704" ; primary_name "pnn1" ; product "pinin ortholog, involved in splicing Pnn1 (predicted)" ; reserved_name "pnn1" ;
chromosome1 GeneDB mRNA 1845648 1848341 . - . mRNA SPAC1399.02 ; db_xref "SPD:49/49C02" ; systematic_id "SPAC1399.02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCL069W and YGR224W and YPR198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; gene "SPAC1399.02" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 1436007 1437462 . - . mRNA SPAC3A12.09c ; db_xref "SPD:11/11G08" ; systematic_id "SPAC3A12.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0019627; urea metabolic process" ; gene "SPAC3A12.09c" ; product "urease accessory protein UreD (predicted)" ;
chromosome1 GeneDB mRNA 4439887 4442513 . + . mRNA SPAC9E9.03 ; systematic_id "SPAC9E9.03" ; colour "7" ; gene "leu2 ||| SPAC9E9.03" ; Alias "leu2" ; db_xref "SPD:40/40H05" ; GO "GO:0003861; 3-isopropylmalate dehydratase activity
GO:0009098; leucine biosynthesis
GO:0005829; cytosol" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL009C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "leu2" ; product "3-isopropylmalate dehydratase Leu2 (predicted)" ; EC_number "4.2.1.33" ;
chromosome1 GeneDB mRNA 4296936 4297905 . - . mRNA SPAC25G10.02 ; systematic_id "SPAC25G10.02" ; colour "2" ; gene "cce1 ||| ydc2 ||| SPAC25G10.02" ; Alias "cce1" ; db_xref "SPD:09/09F08" ; synonym "ydc2" ; GO "GO:0005739; mitochondrion
GO:0003677; DNA binding
GO:0008821; crossover junction endodeoxyribonuclease activity
GO:0004520; endodeoxyribonuclease activity
GO:0006310; DNA recombination
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SAP domain; date=19700101 ||| term=orthologous to S. cerevisiae YKL011C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "cce1" ; product "mitochondrial cruciform cutting endonuclease Cce1" ; EC_number "3.1.22.4" ;
chromosome1 GeneDB mRNA 1691977 1694783 . + . mRNA SPAC824.05 ; systematic_id "SPAC824.05" ; colour "7" ; gene "vps16 ||| SPAC824.05" ; Alias "vps16" ; db_xref "SPD:39/39A06" ; GO "GO:0030897; HOPS complex
GO:0042144; vacuole fusion, non-autophagic
GO:0048278; vesicle docking
GO:0007033; vacuole organization and biogenesis
GO:0045324; late endosome to vacuole transport
GO:0006895; Golgi to endosome transport
GO:0006623; protein targeting to vacuole" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL045W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps16" ; product "HOPS complex subunit Vps16 (predicted)" ;
chromosome1 GeneDB mRNA 2328657 2330289 . + . mRNA SPAC6C3.04 ; systematic_id "SPAC6C3.04" ; colour "2" ; gene "cit1 ||| SPAC6C3.04" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00630; ||| SPD:21/21H01" ; Alias "cit1" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006101; citrate metabolism
GO:0004108; citrate (Si)-synthase activity
GO:0044275; cellular carbohydrate catabolic process
GO:0005759; mitochondrial matrix
GO:0006537; glutamate biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR001C and YCR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=catalytic activity, 2.6 umil/min/mg; cv=cat_act; db_xref=PMID:17072883; date=20100126 ||| term=experimental tools, substrate for chaperone activity assay; cv=ex_tools; db_xref=PMID:17072883; date=20100126" ; primary_name "cit1" ; product "citrate synthase Cit1" ; EC_number "2.3.3.1" ;
chromosome1 GeneDB mRNA 2927204 2931205 . - . mRNA SPAC2E1P3.03c ; Alias "Tf2-3" ; systematic_id "SPAC2E1P3.03c" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "SPAC2E1P3.03c ||| Tf2-3" ; primary_name "Tf2-3" ; product "retrotransposable element" ;
chromosome1 GeneDB mRNA 1976875 1979130 . + . mRNA SPAC9G1.05 ; db_xref "SPD:37/37F11" ; systematic_id "SPAC9G1.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030042; actin filament depolymerization
GO:0030479; actin cortical patch
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC9G1.05" ; product "actin cortical patch component Aip1 (predicted)" ;
chromosome1 GeneDB mRNA 854453 869670 . - . mRNA SPAC23G3.02c ; systematic_id "SPAC23G3.02c" ; colour "2" ; gene "sib1 ||| SPAC23G3.02c" ; note "possible FRAMESHIFT; base-check of problem region in progress" ; Alias "sib1" ; db_xref "SPD:50/50A04" ; GO "GO:0016879; ligase activity, forming carbon- nitrogen bonds
GO:0031177; phosphopantetheine binding
GO:0031169; ferrichrome biosynthesis
GO:0006880; intracellular sequestering of iron ion
GO:0033214; iron assimilation by chelation and transport
GO:0006879; iron ion homeostasis
GO:0019184; nonribosomal peptide biosynthesis
GO:0019290; siderophore biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, phosphopantetheine attachment site; db_xref=PMID:15689108; cv=pt_mod; date=20050207 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=genome organization, divergently orientated to functionally related gene; cv=genome_org; db_xref=PMID:15689108; date=20061027 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=gene expression, co-transcribed with divergently orientated functionally related gene; db_xref=PMID:15689108; date=20061027" ; primary_name "sib1" ; product "ferrichrome synthetase Sib1" ;
chromosome1 GeneDB mRNA 770560 772595 . + . mRNA SPAC4G8.05 ; systematic_id "SPAC4G8.05" ; colour "2" ; gene "ppk14 ||| SPAC4G8.05" ; Alias "ppk14" ; db_xref "SPD:35/35D07" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0019236; response to pheromone
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNR047W and YCR091W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk14" ; product "serine/threonine protein kinase Ppk14 (predicted)" ;
chromosome1 GeneDB mRNA 5100217 5104180 . - . mRNA SPAC1250.01 ; systematic_id "SPAC1250.01" ; colour "2" ; gene "snf21 ||| SPAC1250.01" ; Alias "snf21" ; db_xref "SPD:39/39B09" ; synonym "SPAC29A4.21 ||| brg1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=bromodomain; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YOR290C and YIL126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100218 ||| term=human SMARCA4 ortholog; date=20100218" ; GO "GO:0016586; RSC complex
GO:0000790; nuclear chromatin
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0003677; DNA binding
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0006366; transcription from RNA polymerase II promoter" ; primary_name "snf21" ; product "ATP-dependent DNA helicase Snf21" ;
chromosome1 GeneDB mRNA 4267080 4268016 . + . mRNA SPAC2C4.05 ; db_xref "SPD:04/04F12" ; systematic_id "SPAC2C4.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR210W and YGL054C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005789; endoplasmic reticulum membrane
GO:0006886; intracellular protein transport
GO:0030134; ER to Golgi transport vesicle" ; gene "SPAC2C4.05" ; product "cornichon family protein (predicted)" ;
chromosome1 GeneDB mRNA 1620498 1621262 . - . mRNA SPAP27G11.07c ; systematic_id "SPAP27G11.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR262C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000408; EKC/KEOPS protein complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0000723; telomere maintenance" ; gene "SPAP27G11.07c" ; product "serine/threonine protein kinase (predicted)" ;
chromosome1 GeneDB mRNA 2962954 2967425 . - . mRNA SPAPB24D3.09c ; Alias "pdr1" ; systematic_id "SPAPB24D3.09c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=PDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YDR011W and YNR070W and YPL058C and YOR328W and YOR153W and YDR406W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005886; plasma membrane
GO:0055085; tranmembrane transport
GO:0005789; endoplasmic reticulum membrane
GO:0043492; ATPase activity, coupled to movement of substances
GO:0005524; ATP binding" ; gene "pdr1 ||| SPAPB24D3.09c" ; primary_name "pdr1" ; product "ABC transporter Pdr1" ;
chromosome1 GeneDB mRNA 4434861 4435201 . + . mRNA SPAC9E9.01 ; db_xref "SPD:02/02A08" ; systematic_id "SPAC9E9.01" ; colour "6" ; gene "SPAC9E9.01" ; product "dubious" ;
chromosome1 GeneDB mRNA 2439532 2441027 . + . mRNA SPAC6B12.15 ; systematic_id "SPAC6B12.15" ; colour "2" ; gene "cpc2 ||| rkp1 ||| SPAC6B12.15" ; Alias "cpc2" ; db_xref "SPD:21/21E12" ; synonym "rkp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15277777; date=20060503 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:11263963; date=20100705 ||| term=WD repeat protein; date=20060503 ||| term=pathway, protein kinase C-Pck2- signaling pathway; db_xref=PMID:11263963; date=20060503 ||| term=orthologous to S. cerevisiae YMR116C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Receptor for activated protein Kinase of S. Pombe; date=20090710 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target of Ran1; qualifier=phosphorylated_by; db_xref=PMID:10805744; date=20100826 ||| term=warning, ncRNA in intron; cv=warning; date=20100122" ; GO "GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
; protein binding
GO:0005080; protein kinase C binding
GO:0043022; ribosome binding
GO:0032956; regulation of actin cytoskeleton organization
GO:0032995; regulation of fungal-type cell wall organization and biogenesis
GO:0034613; cellular protein localization
GO:0023034; intracellular signaling cascade
GO:0031139; positive regulation of conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion
GO:0017148; negative regulation of translation" ; primary_name "cpc2" ; product "RACK1 ortholog Cpc2" ;
chromosome1 GeneDB mRNA 1426054 1429956 . - . mRNA SPAC3A12.05c ; systematic_id "SPAC3A12.05c" ; colour "7" ; gene "taf2 ||| SPAC3A12.05c" ; Alias "taf2" ; db_xref "SPD:48/48C10" ; GO "GO:0016251; general RNA polymerase II transcription factor activity
GO:0005669; transcription factor TFIID complex
GO:0006367; transcription initiation from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YCR042C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "taf2" ; product "TATA-binding protein associated factor Taf2 (predicted)" ;
chromosome1 GeneDB mRNA 1395856 1398222 . - . mRNA SPAC20G8.04c ; db_xref "SPD:46/46B01" ; systematic_id "SPAC20G8.04c" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0051539; 4 iron, 4 sulfur cluster binding
GO:0004174; electron-transferring-flavoprotein dehydrogenase activity
GO:0006116; NADH oxidation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR356W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAC20G8.04c" ; product "mitochondrial electron transfer flavoprotein- ubiquinone oxidoreductase (predicted)" ; EC_number "1.5.5.1" ;
chromosome1 GeneDB mRNA 4659230 4663739 . + . mRNA SPAC144.05 ; db_xref "SPD:30/30G08" ; systematic_id "SPAC144.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR247C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0008094; DNA-dependent ATPase activity
GO:0006281; DNA repair
GO:0004842; ubiquitin-protein ligase activity
GO:0005634; nucleus
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0000790; nuclear chromatin" ; gene "SPAC144.05" ; product "ATP-dependent DNA helicase (predicted)" ;
chromosome1 GeneDB mRNA 390455 391173 . - . mRNA SPAC31A2.04c ; db_xref "SPD:06/06C11" ; systematic_id "SPAC31A2.04c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005634; nucleus
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism" ; gene "SPAC31A2.04c" ; product "20S proteasome component beta 4 (predicted)" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB mRNA 530322 531807 . + . mRNA SPAC227.18 ; systematic_id "SPAC227.18" ; colour "2" ; gene "lys3 ||| SPAC227.18 ||| SPAC2F7.01" ; Alias "lys3" ; db_xref "SPD:17/17D06" ; synonym "SPAC2F7.01" ; GO "GO:0019878; lysine biosynthesis via aminoadipic acid
GO:0004754; saccharopine dehydrogenase (NAD+, L- lysine-forming) activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for lysine; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=orthologous to S. cerevisiae YIR034C; date=19700101 ||| term=experimental tools, selectable marker; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lys3" ; product "saccharopine dehydrogenase Lys3" ; EC_number "1.5.1.7" ;
chromosome1 GeneDB mRNA 126951 129316 . - . mRNA SPAC11D3.11c ; obsolete_name "SPAC11D3.12c" ; db_xref "SPD:27/27E08" ; systematic_id "SPAC11D3.11c" ; colour "10" ; controlled_curation "term=similar to S. pombe SPCC757.04; date=19700101 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131 ||| term=warning, previously annotated as pseudogene; db_xref=PMID:21270388; date=20110131" ; gene "SPAC11D3.11c" ; product "zinc finger protein, truncated" ;
chromosome1 GeneDB mRNA 5452217 5453812 . + . mRNA SPAC1039.03 ; db_xref "SPD:15/15D09" ; systematic_id "SPAC1039.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC1039.03" ; product "esterase/lipase (predicted)" ;
chromosome1 GeneDB mRNA 3671978 3673350 . - . mRNA SPAC8C9.16c ; systematic_id "SPAC8C9.16c" ; colour "10" ; gene "SPAC8C9.16c ||| mug63" ; Alias "mug63" ; db_xref "SPD:06/06A01" ; GO "GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL196W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug63" ; product "TLDc domain protein 1" ;
chromosome1 GeneDB mRNA 1697918 1700118 . + . mRNA SPAC824.08 ; systematic_id "SPAC824.08" ; colour "2" ; gene "gda1 ||| SPAC824.08 ||| gdp1" ; Alias "gda1" ; db_xref "SPD:34/34H12" ; synonym "gdp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL042W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=complementation, functionally complements S. cerevisiae GDA1; db_xref=PMID:14612233; date=20101012" ; GO "GO:0005794; Golgi apparatus
GO:0004382; guanosine-diphosphatase activity
GO:0004551; nucleotide diphosphatase activity
GO:0006486; protein amino acid glycosylation" ; primary_name "gda1" ; product "guanosine-diphosphatase Gda1" ;
chromosome1 GeneDB mRNA 3986648 3986920 . - . mRNA SPAPB18E9.05c ; systematic_id "SPAPB18E9.05c" ; controlled_curation "term=warning, below 100 amino acid size threshold; cv=warning; date=19700101" ; colour "6" ; gene "SPAPB18E9.05c" ; product "dubious" ;
chromosome1 GeneDB mRNA 1673882 1675367 . + . mRNA SPAC343.15 ; systematic_id "SPAC343.15" ; colour "7" ; gene "SPAC343.15 ||| tit1 ||| mod5" ; Alias "tit1" ; db_xref "SPD:22/22F11" ; synonym "mod5" ; GO "GO:0005829; cytosol
GO:0005739; mitochondrion
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0052381; tRNA dimethylallytransferase activity
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR274W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tit1" ; product "tRNA isopentenyltransferase (predicted)" ; reserved_name "tit1" ;
chromosome1 GeneDB mRNA 216483 216962 . + . mRNA SPAC24B11.09 ; db_xref "SPD:02/02D06" ; systematic_id "SPAC24B11.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR243W and YHR162W; date=19700101 ||| term=human BRP44 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0005739; mitochondrion" ; gene "SPAC24B11.09" ; product "mitochondrial protein, predicted, human BRP44 ortholog" ;
chromosome1 GeneDB mRNA 3909300 3910407 . - . mRNA SPAC323.02c ; systematic_id "SPAC323.02c" ; colour "7" ; gene "pup2 ||| SPAC323.02c" ; Alias "pup2" ; db_xref "SPD:14/14C01" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR253C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pup2" ; product "20S proteasome component alpha 5, Pup2 (predicted)" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB mRNA 3276638 3278510 . - . mRNA SPAC6G9.15c ; db_xref "SPD:24/24C02" ; systematic_id "SPAC6G9.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC6G9.15c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3106304 3106910 . - . mRNA SPAC589.08c ; systematic_id "SPAC589.08c" ; colour "2" ; gene "dam1 ||| SPAC589.08c" ; Alias "dam1" ; db_xref "SPD:41/41C05" ; GO "GO:0007052; mitotic spindle organization and biogenesis
GO:0042729; DASH complex
GO:0031134; sister chromatid biorientation
GO:0005816; spindle pole body
GO:0000778; condensed nuclear chromosome kinetochore
GO:0071470; cellular response to osmotic stress
GO:0090007; regulation of mitotic anaphase
GO:0007094; mitotic spindle checkpoint
GO:0051314; attachment of spindle microtubules to mitotic chromosome
GO:0051314; attachment of spindle microtubules to mitotic chromosome
GO:0000779; condensed chromosome, pericentric region" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR113W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "dam1" ; product "DASH complex subunit Dam1" ;
chromosome1 GeneDB mRNA 3425907 3428910 . + . mRNA SPAC3H5.08c ; db_xref "SPD:49/49E11" ; systematic_id "SPAC3H5.08c" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR102C and YKL121W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human WDR44 ortholog; date=20100622" ; colour "10" ; gene "SPAC3H5.08c" ; product "WD repeat protein, human WDR44 family" ;
chromosome1 GeneDB mRNA 2363568 2365394 . + . mRNA SPAC17G8.12 ; db_xref "SPD:36/36F09" ; systematic_id "SPAC17G8.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC17G8.12" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 299375 301797 . - . mRNA SPAC18B11.10 ; systematic_id "SPAC18B11.10" ; colour "2" ; gene "tup11 ||| SPAC18B11.10" ; note "a number of genes are differentially affected by mutations in tup11 and tup12 in cellular response to cation stress (PMID 156320722)" ; Alias "tup11" ; db_xref "SPD:27/27G06" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0042393; histone binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003714; transcription corepressor activity
GO:0003714; transcription corepressor activity
GO:0006342; chromatin silencing
GO:0045014; negative regulation of transcription by glucose
GO:0033554; cellular response to stress
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCR084C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "tup11" ; product "transcriptional corepressor Tup11" ;
chromosome1 GeneDB mRNA 156430 157970 . - . mRNA SPAC5H10.06c ; systematic_id "SPAC5H10.06c" ; colour "2" ; gene "adh4 ||| SPAC5H10.06c" ; Alias "adh4" ; db_xref "SPD:44/44B03" ; GO "GO:0005739; mitochondrion
GO:0004023; alcohol dehydrogenase activity, metal ion-independent
GO:0004024; alcohol dehydrogenase activity, zinc- dependent
GO:0034224; cellular response to zinc ion starvation
GO:0019655; glucose catabolism to ethanol
GO:0071276; cellular response to cadmium ion
GO:0055069; zinc ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL256W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "adh4" ; product "alcohol dehydrogenase Adh4" ; EC_number "1.1.1.1" ;
chromosome1 GeneDB mRNA 15993 16226 . + . mRNA SPAC212.12 ; db_xref "PMID:18488015" ; synonym "SPNG7" ; systematic_id "SPAC212.12" ; pseudo "_no_value" ; colour "13" ; gene "SPAC212.12 ||| SPNG7" ; product "pseudogene" ; note "duplicated open reading frame with truncated N- term" ;
chromosome1 GeneDB mRNA 2538102 2540002 . + . mRNA SPAC25H1.09 ; systematic_id "SPAC25H1.09" ; colour "2" ; db_xref "SPD:25/25A03" ; Alias "mde5" ; synonym "meu30 ||| SPAC4A8.01" ; GO "GO:0009986; cell surface
GO:0004556; alpha-amylase activity
GO:0005509; calcium ion binding
GO:0044275; cellular carbohydrate catabolism
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "mde5" ; product "alpha-amylase homolog Mde5" ; EC_number "3.2.1.1" ;
chromosome1 GeneDB mRNA 2116520 2119933 . + . mRNA SPAC20H4.04 ; systematic_id "SPAC20H4.04" ; colour "7" ; gene "SPAC20H4.04 ||| mfh2" ; Alias "fml2" ; db_xref "SPD:49/49E05" ; synonym "mfh2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YIR002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0043138; 3' to 5' DNA helicase activity
GO:0006281; DNA repair
GO:0005634; nucleus
GO:0043140; ATP-dependent 3' to 5' DNA helicase activity
GO:0033567; DNA replication, Okazaki fragment processing" ; primary_name "fml2" ; product "ATP-dependent 3' to 5' DNA helicase (predicted)" ;
chromosome1 GeneDB mRNA 1213726 1214781 . + . mRNA SPAC10F6.04 ; db_xref "SPD:16/16B05" ; systematic_id "SPAC10F6.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=regulator of condensation (RCC1) domains; date=19700101 ||| term=orthologous to S. cerevisiae YAL020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0007017; microtubule-based process
GO:0006400; tRNA modification" ; gene "SPAC10F6.04" ; product "RCC domain protein Ats1 (predicted)" ;
chromosome1 GeneDB mRNA 5022119 5024044 . + . mRNA SPAC22E12.02 ; db_xref "SPD:12/12B11" ; systematic_id "SPAC22E12.02" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human RBM7 ortholog; date=20100301" ; colour "10" ; gene "SPAC22E12.02" ; product "RNA-binding protein" ;
chromosome1 GeneDB mRNA 2585176 2587430 . + . mRNA SPAC823.03 ; systematic_id "SPAC823.03" ; colour "2" ; gene "ppk15 ||| SPAC823.03" ; Alias "ppk15" ; db_xref "SPD:34/34F09" ; obsolete_name "SPAC1E11.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YJL141C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "ppk15" ; product "serine/threonine protein kinase Ppk15 (predicted)" ;
chromosome1 GeneDB mRNA 329810 332816 . - . mRNA SPAC12G12.09 ; db_xref "SPD:47/47E06" ; systematic_id "SPAC12G12.09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20090811 ||| term=species distribution, conserved in Fungi only; date=20090811 ||| term=related to S. pombe SPAC20G4.08; date=20090811 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20091123" ; colour "10" ; gene "SPAC12G12.09" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 2339836 2341195 . + . mRNA SPAC6C3.09 ; db_xref "SPD:20/20B04" ; systematic_id "SPAC6C3.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005655; nucleolar ribonuclease P complex
GO:0001682; tRNA 5'-leader removal
GO:0004526; ribonuclease P activity" ; gene "SPAC6C3.09" ; product "RNase P subunit (predicted)" ;
chromosome1 GeneDB mRNA 4409773 4410391 . + . mRNA SPAC29E6.04 ; systematic_id "SPAC29E6.04" ; colour "2" ; gene "nnf1 ||| SPAC30.08 ||| SPAC29E6.04" ; note "extra G at 4410193" ; Alias "nnf1" ; db_xref "SPD:03/03G04" ; synonym "SPAC30.08" ; GO "GO:0000818; MIND complex
GO:0031617; NMS complex
GO:0000779; condensed chromosome, pericentric region
GO:0005634; nucleus
GO:0000070; mitotic sister chromatid segregation
GO:0019236; response to pheromone
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:17035632; date=20090202 ||| term=warning, frameshifted; date=20090202 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; primary_name "nnf1" ; product "kinetochore protein Nnf1" ;
chromosome1 GeneDB mRNA 5456727 5459483 . - . mRNA SPAC1039.05c ; systematic_id "SPAC1039.05c" ; colour "2" ; gene "SPAC1039.05c ||| klf1" ; db_xref "SPD:38/38G08" ; Alias "klf1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YPR022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "klf1" ; product "zinc finger protein Klf1" ;
chromosome1 GeneDB mRNA 4931421 4933677 . - . mRNA SPAC1B3.04c ; db_xref "SPD:27/27E11" ; systematic_id "SPAC1B3.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR289W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0043022; ribosome binding
GO:0070131; posivtive regulation of mitochondrial translation" ; gene "SPAC1B3.04c" ; product "mitochondrial GTPase involved in translation Guf1 (predicted)" ;
chromosome1 GeneDB mRNA 4853053 4855029 . + . mRNA SPAC4F10.11 ; systematic_id "SPAC4F10.11" ; colour "2" ; gene "spn1 ||| SPAC4F10.11" ; Alias "spn1" ; db_xref "SPD:33/33A11" ; GO "GO:0005525; GTP binding
GO:0005940; septin ring
GO:0031105; septin complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15385632; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; date=20100727 ||| term=orthologous to S. cerevisiae YLR314C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spn1" ; product "septin Spn1" ;
chromosome1 GeneDB mRNA 3949057 3950178 . - . mRNA SPAC2F3.13c ; systematic_id "SPAC2F3.13c" ; colour "7" ; gene "SPAC2F3.13c" ; note "31.06.02 split to create SPAC2F3.13c and SPAC2F3.12c" ; db_xref "SPD:28/28A12" ; GO "GO:0008479; queuine tRNA-ribosyltransferase activity
GO:0008616; queuosine biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "queuine tRNA-ribosyltransferase (predicted)" ; EC_number "2.4.2.29" ;
chromosome1 GeneDB mRNA 2691326 2692150 . + . mRNA SPAC644.10 ; systematic_id "SPAC644.10" ; colour "7" ; db_xref "SPD:03/03B11" ; Alias "med11" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
; RNA polymerase II transcription mediator activity
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR112C; date=20080807 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "med11" ; product "mediator complex subunit Med11 (predicted)" ;
chromosome1 GeneDB mRNA 4147676 4151468 . + . mRNA SPAC26H5.12 ; systematic_id "SPAC26H5.12" ; colour "2" ; gene "SPAC26H5.12 ||| rpo41" ; Alias "rpo41" ; db_xref "SPD:30/30D10" ; GO "GO:0005759; mitochondrial matrix
GO:0003899; DNA-directed RNA polymerase activity
GO:0000002; mitochondrial genome maintenance
GO:0006390; transcription from mitochondrial promoter
GO:0001044; mitochondrial RNA polymerase regulatory region sequence-specific DNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpo41" ; product "mitochondrial RNA polymerase Rpo41" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB mRNA 4520244 4521012 . - . mRNA SPAC27D7.07c ; systematic_id "SPAC27D7.07c" ; colour "2" ; gene "smd1 ||| SPAC27D7.07c" ; Alias "smd1" ; db_xref "SPD:04/04A04" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000243; commitment complex
GO:0005685; snRNP U1
GO:0003729; mRNA binding
GO:0000395; nuclear mRNA 5'-splice site recognition
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YGR074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "smd1" ; product "Sm snRNP core protein Smd1" ;
chromosome1 GeneDB mRNA 2751440 2752818 . - . mRNA SPAC6F6.11c ; db_xref "SPD:17/17H04" ; systematic_id "SPAC6F6.11c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR027W and YEL029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008478; pyridoxal kinase activity" ; gene "SPAC6F6.11c" ; product "pyridoxine-pyridoxal-pyridoxamine kinase (predicted)" ; EC_number "2.7.1.35" ;
chromosome1 GeneDB mRNA 2521543 2523281 . + . mRNA SPAC23H3.14 ; db_xref "SPD:25/25E03" ; systematic_id "SPAC23H3.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR114C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006892; post-Golgi vesicle-mediated transport" ; gene "SPAC23H3.14" ; product "LAlv9 family protein, involved in post Golgi transport (predicted)" ;
chromosome1 GeneDB mRNA 13665 14555 . + . mRNA SPAC212.07c ; systematic_id "SPAC212.07c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC212.07c" ; product "pseudogene" ;
chromosome1 GeneDB mRNA 3629015 3631448 . - . mRNA SPAC1142.03c ; systematic_id "SPAC1142.03c" ; colour "2" ; gene "swi2 ||| SPAC17G6.20c ||| SPAC1142.03c" ; Alias "swi2" ; db_xref "SPD:46/46F03" ; synonym "SPAC17G6.20c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=related to S. pombe Sfr1 (C- term); date=19700101 ||| term=misc, focus formation at heterochromatic regions, Swi5_dependent; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=misc, focus formation at heterochromatic regions, Swi6_dependent; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0007533; mating type switching
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000790; nuclear chromatin
GO:0034974; Swi5-Swi2 complex" ; primary_name "swi2" ; product "Swi5 complex subunit Swi2" ;
chromosome1 GeneDB mRNA 2773773 2774928 . - . mRNA SPAC1805.02c ; db_xref "SPD:10/10H05" ; systematic_id "SPAC1805.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR207C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human ETFB ortholog; date=20100718" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0009055; electron carrier activity" ; gene "SPAC1805.02c" ; product "electron transfer flavoprotein beta subunit (predicted)" ;
chromosome1 GeneDB mRNA 411850 414216 . + . mRNA SPAC31A2.12 ; db_xref "SPD:45/45H06" ; systematic_id "SPAC31A2.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=PY motif; qualifier=predicted; db_xref=PMID:12163175; date=19700101 ||| term=orthologous to S. cerevisiae YOR018W and YFR022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005509; calcium ion binding
GO:0009966; regulation of signal transduction" ; gene "SPAC31A2.12" ; product "arrestin/PY protein 1 (predicted)" ;
chromosome1 GeneDB mRNA 1559466 1563472 . - . mRNA SPAC167.01 ; systematic_id "SPAC167.01" ; colour "2" ; gene "ppk4 ||| SPAC167.01 ||| ire1" ; Alias "ire1" ; db_xref "SPD:48/48B07" ; synonym "ppk4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=PQQ repeat; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR079C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005524; ATP binding
GO:0004521; endoribonuclease activity
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0030968; unfolded protein response
GO:0006916; anti-apoptosis" ; primary_name "ire1" ; product "serine/threonine protein kinase Ppk4/ sensor for unfolded proteins in the ER (predicted)" ;
chromosome1 GeneDB mRNA 120556 123705 . - . mRNA SPAC11D3.08c ; db_xref "SPD:34/34F10" ; systematic_id "SPAC11D3.08c" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; colour "7" ; gene "SPAC11D3.08c" ; product "amino acid permease, unknown 1 (predicted)" ;
chromosome1 GeneDB mRNA 4301402 4303777 . - . mRNA SPAC25G10.04c ; systematic_id "SPAC25G10.04c" ; colour "2" ; gene "rec10 ||| SPAC25G10.04c ||| rec20" ; note "orthology prediction from" ; Alias "rec10" ; db_xref "SPD:33/33G11" ; synonym "rec20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR263W; db_xref=PMID:15226405; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, sumoylated; evidence=ISS; qualifier=predicted; cv=pt_mod; date=20091207" ; GO "GO:0007131; meiotic recombination
GO:0007131; meiotic recombination
GO:0051177; meiotic sister chromatid cohesion
GO:0045144; meiotic sister chromatid segregation
GO:0030999; linear element formation
GO:0030999; linear element formation
GO:0030998; linear element
GO:0051177; meiotic sister chromatid cohesion
GO:0042138; meiotic DNA double-strand break formation
GO:0042138; meiotic DNA double-strand break formation
GO:0034613; cellular protein localization" ; primary_name "rec10" ; product "meiotic recombination protein Rec10" ;
chromosome1 GeneDB mRNA 3237910 3238362 . - . mRNA SPAC6G10.11c ; systematic_id "SPAC6G10.11c" ; colour "7" ; gene "ubi3 ||| SPAC6G10.11c" ; Alias "ubi3" ; db_xref "SPD:04/04A03" ; GO "GO:0005737; cytoplasm
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis and assembly
GO:0022627; cytosolic small ribosomal subunit" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ribosomal-ubiquitin fusion protein; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=warning, identical paralog; cv=warning; date=19700101 ||| term=orthologous to S. cerevisiae YLR167W; date=19700101 ||| term=phenotype, cell cycle defects; qualifier=overexpression; cv=phenotype; db_xref=PMID:12237855; date=20080728 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ubi3" ; product "ribosomal-ubiquitin fusion protein Ubi3 (predicted)" ;
chromosome1 GeneDB mRNA 2061688 2063777 . - . mRNA SPAC3C7.01c ; systematic_id "SPAC3C7.01c" ; colour "7" ; gene "SPAC732.03c ||| SPAC3C7.01c" ; Alias "SPAC732.03c" ; db_xref "SPD:36/36G05" ; synonym "SPAC732.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000139; Golgi membrane
GO:0005789; endoplasmic reticulum membrane
GO:0005739; mitochondrion
GO:0004437; inositol or phosphatidylinositol phosphatase activity
GO:0006887; exocytosis
GO:0046856; phosphoinositide dephosphorylation
GO:0046488; phosphatidylinositol metabolic process" ; primary_name "SPAC732.03c" ; product "inositol polyphosphate phosphatase (predicted)" ;
chromosome1 GeneDB mRNA 3987033 3991477 . - . mRNA SPAPB15E9.01c ; systematic_id "SPAPB15E9.01c" ; colour "8" ; gene "SPAPB18E9.06c ||| SPAPB15E9.01c" ; Alias "SPAPB18E9.06c" ; synonym "SPAPB18E9.06c" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "SPAPB18E9.06c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1587146 1588577 . - . mRNA SPAC23H4.12 ; systematic_id "SPAC23H4.12" ; colour "2" ; gene "alp13 ||| SPAC23H4.12" ; Alias "alp13" ; db_xref "SPD:16/16C09" ; GO "GO:0032221; Clr6 histone deacetylase complex
GO:0032221; Clr6 histone deacetylase complex II'
GO:0035267; NuA4 histone acetyltransferase complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0030261; chromosome condensation
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0016575; histone deacetylation
GO:0016575; histone deacetylation
GO:0006974; response to DNA damage stimulus
GO:0016573; histone acetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=chromodomain protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; cv=misc; db_xref=PMID:19040720; date=20081230 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "alp13" ; product "MRG family Clr6 histone deacetylase complex subunit Alp13" ;
chromosome1 GeneDB mRNA 3631536 3633874 . + . mRNA SPAC1142.04 ; db_xref "SPD:37/37D08" ; systematic_id "SPAC1142.04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR206W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030691; Noc2p-Noc3p complex
GO:0005730; nucleolus
GO:0042254; ribosome biogenesis
GO:0000054; ribosome export from nucleus
GO:0030690; Noc1p-Noc2p complex" ; gene "SPAC1142.04" ; product "Noc complex subunit Noc2 family (predicted)" ;
chromosome1 GeneDB mRNA 4340057 4342048 . - . mRNA SPAC23D3.03c ; db_xref "SPD:44/44E08" ; systematic_id "SPAC23D3.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TBC1D12 and TBC1D14 ortholog; date=20100908" ; colour "7" ; GO "GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; gene "SPAC23D3.03c" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB mRNA 1917845 1920201 . - . mRNA SPAC110.04c ; systematic_id "SPAC110.04c" ; colour "2" ; db_xref "SPD:49/49D08" ; Alias "pss1" ; synonym "ssp1 ||| SPAP14E8.01c" ; GO "GO:0005737; cytoplasm
GO:0034605; cellular response to heat
GO:0000774; adenyl-nucleotide exchange factor activity
GO:0006457; protein folding
GO:0042026; protein refolding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL106C and YBR169C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "pss1" ; product "heat shock protein Pss1" ;
chromosome1 GeneDB mRNA 339766 342080 . - . mRNA SPAC12G12.04 ; systematic_id "SPAC12G12.04" ; colour "2" ; gene "mcp60 ||| hsp60 ||| SPAC12G12.04" ; Alias "mcp60" ; db_xref "SPD:36/36A03" ; synonym "hsp60" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, chaperone; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YLR259C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8566770; evidence=IMP; date=20080714 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0042645; mitochondrial nucleoid
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0003697; single-stranded DNA binding
GO:0006457; protein folding
GO:0030150; protein import into mitochondrial matrix
GO:0034605; cellular response to heat
GO:0061077; chaperone-mediated protein folding" ; primary_name "mcp60" ; product "mitochondrial heat shock protein Hsp60/Mcp60" ;
chromosome1 GeneDB mRNA 5363988 5365961 . - . mRNA SPAC4D7.08c ; systematic_id "SPAC4D7.08c" ; colour "2" ; gene "ade4 ||| min13 ||| aza1 ||| SPAC4D7.08c" ; Alias "ade4" ; db_xref "SPD:25/25F11" ; synonym "min13 ||| aza1" ; controlled_curation "term=orthologous to S. cerevisiae YMR300C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0009113; purine base biosynthesis
GO:0006164; purine nucleotide biosynthesis
GO:0005737; cytoplasm
GO:0004044; amidophosphoribosyltransferase activity
GO:0006189; 'de novo' IMP biosynthesis" ; primary_name "ade4" ; product "amidophosphoribosyltransferase Ade4" ; EC_number "2.4.2.14" ;
chromosome1 GeneDB mRNA 39431 40050 . + . mRNA SPAC977.06 ; systematic_id "SPAC977.06" ; controlled_curation "term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; gene "SPAC977.06" ; product "S. pombe specific DUF999 family protein 3" ;
chromosome1 GeneDB mRNA 799380 800981 . + . mRNA SPAC16C9.05 ; systematic_id "SPAC16C9.05" ; colour "2" ; gene "SPAC16C9.05 ||| cph1" ; Alias "cph1" ; db_xref "SPD:19/19C10" ; GO "GO:0032221; Clr6 histone deacetylase complex II'
GO:0032221; Clr6 histone deacetylase complex II'
GO:0019787; small conjugating protein ligase activity
GO:0006368; RNA elongation from RNA polymersase II promoter
GO:0006338; chromatin remodeling
GO:0016575; histone deacetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YMR075W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "cph1" ; product "Clr6 histone deacetylase associated PHD protein- 1 Cph1" ;
chromosome1 GeneDB mRNA 3927436 3928377 . - . mRNA SPAC2F3.04c ; systematic_id "SPAC2F3.04c" ; colour "2" ; gene "SPAC2F3.04c ||| rim1" ; Alias "rim1" ; db_xref "SPD:05/05D08" ; GO "GO:0042645; mitochondrial nucleoid
GO:0003697; single-stranded DNA binding
GO:0006264; mitochondrial DNA replication
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR028C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rim1" ; product "mitochondrial single-stranded DNA binding protein Rim1" ;
chromosome1 GeneDB mRNA 3063731 3065217 . + . mRNA SPAC24C9.09 ; systematic_id "SPAC24C9.09" ; colour "7" ; gene "SPAC24C9.09" ; note "Has been mapped to YKL194C rather than YIL078W due to domain combination" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:44/44E12" ; GO "GO:0006435; threonyl-tRNA aminoacylation
GO:0004829; threonine-tRNA ligase activity
GO:0005739; mitochondrion
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL194C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "mitochondrial threonine-tRNA ligase (predicted)" ; EC_number "6.1.1.3" ;
chromosome1 GeneDB mRNA 5548884 5550012 . - . mRNA SPAC186.08c ; db_xref "SPD:17/17G04" ; systematic_id "SPAC186.08c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100827 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0004459; L-lactate dehydrogenase activity
GO:0006089; lactate metabolic process" ; gene "SPAC186.08c" ; product "L-lactate dehydrogenase (predicted)" ; EC_number "1.1.1.27" ;
chromosome1 GeneDB mRNA 1036033 1036508 . + . mRNA SPAC23C4.04c ; systematic_id "SPAC23C4.04c" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; colour "8" ; gene "SPAC23C4.04c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2310288 2311891 . - . mRNA SPAC13G7.08c ; systematic_id "SPAC13G7.08c" ; colour "2" ; gene "crb3 ||| SPAC13G7.08c" ; Alias "crb3" ; db_xref "SPD:24/24D08" ; GO "GO:0005634; nucleus
GO:0006364; 35S primary transcript processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=EMBL:AB008572; date=20060221 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL182C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "crb3" ; product "WD repeat protein Crb3" ;
chromosome1 GeneDB mRNA 2059209 2060861 . - . mRNA SPAC732.02c ; db_xref "SPD:19/19E06" ; systematic_id "SPAC732.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL155C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004331; fructose-2,6-bisphosphate 2- phosphatase activity
GO:0006006; glucose metabolic process
GO:0005829; cytosol" ; colour "7" ; gene "SPAC732.02c" ; product "fructose-2,6-bisphosphate 2-phosphatase activity (predicted)" ;
chromosome1 GeneDB mRNA 1864565 1865777 . - . mRNA SPAPB1A10.04c ; Alias "cwp1" ; systematic_id "SPAPB1A10.04c" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005953; CAAX-protein geranylgeranyltransferase complex
GO:0004663; Rab-protein geranylgeranyltransferase activity
GO:0005515; protein binding
GO:0004661; protein geranylgeranyltransferase activity
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0018344; protein geranylgeranylation" ; gene "cwp1 ||| SPAPB1A10.04c" ; primary_name "cwp1" ; product "geranylgeranyltransferase I alpha subunit Cwp1" ;
chromosome1 GeneDB mRNA 1615804 1618884 . - . mRNA SPAP27G11.05c ; Alias "vps41" ; systematic_id "SPAP27G11.05c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR080W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, neurological disorders; date=20100621 ||| term=disease associated, Parkinson's disease; date=20100621 ||| term=human VPS41 ortholog; date=20100621" ; GO "GO:0030897; HOPS complex
GO:0042144; vacuole fusion, non-autophagic
GO:0048278; vesicle docking
GO:0007033; vacuole organization and biogenesis
GO:0045324; late endosome to vacuole transport
GO:0006895; Golgi to endosome transport
GO:0006623; protein targeting to vacuole" ; gene "vps41 ||| SPAP27G11.05c" ; primary_name "vps41" ; product "HOPS complex subunit Vps41 (predicted)" ;
chromosome1 GeneDB mRNA 4972134 4972986 . - . mRNA SPAC1952.04c ; systematic_id "SPAC1952.04c" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1952.04c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3744164 3744829 . + . mRNA SPAP7G5.05 ; systematic_id "SPAP7G5.05" ; colour "2" ; gene "rpl1002 ||| rpl10-2 ||| SPAP7G5.05 ||| rpl10" ; Alias "rpl1002" ; synonym "rpl10-2 ||| rpl10" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR075W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpl1002" ; product "60S ribosomal protein L10" ;
chromosome1 GeneDB mRNA 125582 126886 . + . mRNA SPAC11D3.10 ; db_xref "SPD:22/22F10" ; systematic_id "SPAC11D3.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPCC777.03c (paralog); date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=warning, possible horizontal transfer; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC11D3.10" ; product "nifs homolog, possible cysteine desulfurase" ;
chromosome1 GeneDB mRNA 5120873 5122055 . - . mRNA SPAC29A4.13 ; db_xref "SPD:08/08D05" ; systematic_id "SPAC29A4.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0019627; urea metabolic process" ; gene "SPAC29A4.13" ; product "urease accessory protein UreF (predicted)" ;
chromosome1 GeneDB mRNA 1444864 1446238 . + . mRNA SPAC3A12.14 ; systematic_id "SPAC3A12.14" ; colour "2" ; gene "cam1 ||| SPAC3A12.14" ; Alias "cam1" ; db_xref "SPD:06/06C03" ; GO "GO:0030427; site of polarized growth
GO:0005816; spindle pole body
GO:0005816; spindle pole body
GO:0005509; calcium ion binding
GO:0005515; protein binding
GO:0031322; ascospore-type prospore-specific spindle pole body remodelling
GO:0071990; maintenance of protein localization at spindle pole body
GO:0033047; regulation of mitotic sister chromatid segregation
GO:0031647; regulation of protein stability
GO:0090307; spindle assembly involved in mitosis
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=calmodulin family; date=19700101 ||| term=EF hand; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9264467; date=19700101 ||| term=orthologous to S. cerevisiae YBR109C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, chromosome segregation defects; qualifier=during_mitosis|required; db_xref=PMID:9264467; date=20100909 ||| term=phenotype, sporulation defects; db_xref=PMID:2690071; date=20101020 ||| term=localization target Spo15; db_xref=PMID:20833892; date=20101111" ; primary_name "cam1" ; product "calmodulin Cam1" ;
chromosome1 GeneDB mRNA 4973664 4975589 . + . mRNA SPAC1952.05 ; systematic_id "SPAC1952.05" ; colour "2" ; gene "gcn5 ||| SPAC1952.05" ; Alias "gcn5" ; db_xref "SPD:44/44D01" ; synonym "kat2" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=orthologous to S. cerevisiae YGR252W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19056896; date=20090110 ||| term=misc, negatively regulates sexual differentiation in nutrient rich conditions by repression of Ste11; db_xref=PMID:19056896; date=20101207" ; GO "GO:0010484; histone H3 acetyltransferase activity
GO:0006338; chromatin remodeling
GO:0043966; histone H3 acetylation
GO:0007131; meiotic recombination
GO:0000790; nuclear chromatin
GO:0044154; histone H3-K14 acetylation
GO:0043971; histone H3-K18 acetylation
GO:0043972; histone H3-K23 acetylation
GO:0043970; histone H3-K9 acetylation" ; primary_name "gcn5" ; product "SAGA complex histone acetyltransferase catalytic subunit Gcn5" ;
chromosome1 GeneDB mRNA 5288265 5292446 . + . mRNA SPAC11E3.05 ; db_xref "SPD:52/52B09" ; systematic_id "SPAC11E3.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); qualifier=inferred from context; date=20060726 ||| term=WD repeat protein; date=19700101 ||| term=RWD domain; date=19700101 ||| term=coronin family; date=19700101 ||| term=orthologous to S. cerevisiae YDR128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human WDR559 ortholog; date=20100704" ; colour "10" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0000329; vacuolar membrane (sensu Fungi)" ; gene "SPAC11E3.05" ; product "ubiquitin-protein ligase E3, human WDR559 ortholog" ;
chromosome1 GeneDB mRNA 4271099 4274116 . - . mRNA SPAC2C4.07c ; db_xref "SPD:47/47C04" ; systematic_id "SPAC2C4.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0003723; RNA binding
GO:0004540; ribonuclease activity
GO:0006401; RNA catabolic process" ; gene "SPAC2C4.07c" ; product "ribonuclease II (RNB) family (predicted)" ;
chromosome1 GeneDB mRNA 2734031 2736205 . - . mRNA SPAC6F6.03c ; db_xref "SPD:27/27E06" ; systematic_id "SPAC6F6.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR053C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=ncRNA in intron; date=20110201" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005525; GTP binding
GO:0005730; nucleolus
GO:0000055; ribosomal large subunit export from nucleus
GO:0003924; GTPase activity" ; gene "SPAC6F6.03c" ; product "ribosome export GTPase (predicted)" ;
chromosome1 GeneDB mRNA 1196723 1198185 . + . mRNA SPAC4C5.03 ; db_xref "SPD:43/43E08" ; systematic_id "SPAC4C5.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=PQ loop; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC4C5.03" ; product "CTNS domain protein (SMART)" ;
chromosome1 GeneDB mRNA 5036954 5039150 . - . mRNA SPAC22E12.10c ; systematic_id "SPAC22E12.10c" ; colour "2" ; gene "etp1 ||| cox15 ||| SPAC22E12.10c" ; Alias "etp1" ; db_xref "SPD:26/26E08" ; synonym "cox15" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, proteolytic cleavage; cv=pt_mod; db_xref=PMID:11841224; date=20060531 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060531 ||| term=disease associated, cardimyopathy; qualifier=N_term; date=20060821 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; date=20060825 ||| term=orthologous to S. cerevisiae YER141W (N-term); date=19700101 ||| term=orthologous to S. cerevisiae YPL252C (C-term); date=19700101 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; GO "GO:0031305; integral to mitochondrial inner membrane
GO:0005743; mitochondrial inner membrane
GO:0051537; 2 iron, 2 sulfur cluster binding
GO:0009055; electron carrier activity
GO:0008535; cytochrome c oxidase complex assembly
GO:0006784; heme a biosynthesis
GO:0022900; electron transport chain
GO:0009055; electron carrier activity" ; primary_name "etp1" ; product "mitochondrial type I [2Fe-2S] ferredoxin Etp1/ cytochrome oxidase cofactor Cox15, fusion" ;
chromosome1 GeneDB mRNA 2590238 2590780 . + . mRNA SPAC823.06 ; systematic_id "SPAC823.06" ; colour "7" ; gene "taf3 ||| SPAC823.06" ; Alias "taf3" ; db_xref "SPD:04/04C06" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YPL011C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "taf3" ; product "transcription factor TFIID complex subunit Taf3 (predicted)" ;
chromosome1 GeneDB mRNA 5436052 5437202 . - . mRNA SPAC29B12.11c ; db_xref "SPD:05/05C04" ; systematic_id "SPAC29B12.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GRAM domain; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC29B12.11c" ; product "human WW domain binding protein-2 ortholog" ;
chromosome1 GeneDB mRNA 1474765 1476147 . - . mRNA SPAC9.07c ; db_xref "SPD:34/34E01" ; systematic_id "SPAC9.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL036C; date=19700101 ||| term=GTP1/OBG family; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005525; GTP binding
GO:0005737; cytoplasm
GO:0003924; GTPase activity
GO:0007264; small GTPase mediated signal transduction" ; gene "SPAC9.07c" ; product "GTPase Rbg1 (predicted)" ;
chromosome1 GeneDB mRNA 2794903 2795607 . + . mRNA SPAC1805.13 ; systematic_id "SPAC1805.13" ; colour "7" ; gene "rpl14 ||| SPAC1805.13" ; Alias "rpl14" ; db_xref "SPD:42/42F08" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL006W and YHL001W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl14" ; product "60S ribosomal protein L14 (predicted)" ;
chromosome1 GeneDB mRNA 5398819 5401897 . + . mRNA SPAC3G6.11 ; systematic_id "SPAC3G6.11" ; colour "7" ; db_xref "SPD:38/38G11" ; Alias "chl1" ; GO "GO:0005634; nucleus
GO:0007064; mitotic sister chromatid cohesion
GO:0004003; ATP-dependent DNA helicase activity
GO:0006342; chromatin silencing
GO:0045910; negative regulation of DNA recombination
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YPL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human DDX11 and DDX12 ortholog; date=20100331" ; primary_name "chl1" ; product "ATP-dependent DNA helicase Chl1 (predicted)" ;
chromosome1 GeneDB mRNA 397497 399420 . + . mRNA SPAC31A2.06 ; systematic_id "SPAC31A2.06" ; colour "7" ; gene "atp25 ||| SPAC31A2.06" ; Alias "atp25" ; db_xref "SPD:26/26A06" ; GO "GO:0005743; mitochondrial inner membrane
GO:0005739; mitochondrion
GO:0033615; mitochondrial proton-transporting ATP synthase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR098C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "atp25" ; product "mitochondrial ATP synthase complex assembly protein Atp25 (predicted)" ;
chromosome1 GeneDB mRNA 1729505 1729858 . + . mRNA SPAC664.13 ; db_xref "SPD:02/02C08" ; systematic_id "SPAC664.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC664.13" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 5238805 5240194 . - . mRNA SPAC14C4.06c ; systematic_id "SPAC14C4.06c" ; colour "7" ; gene "SPAC14C4.06c" ; note "novel or divergent zinc finger, no family identified but similar to zf-CCCH" ; db_xref "SPD:15/15A09" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0008143; poly(A) binding
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; qualifier=inferred from context; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YGL122C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "poly(A) binding protein Nab2 (predicted)" ;
chromosome1 GeneDB mRNA 2313641 2315063 . + . mRNA SPAC13G7.10 ; systematic_id "SPAC13G7.10" ; colour "7" ; gene "SPAC13G7.10 ||| mug152" ; Alias "mug152" ; db_xref "SPD:22/22H12" ; synonym "tay1" ; GO "GO:0000781; chromosome, telomeric region
GO:0000783; nuclear telomere cap complex
GO:0003691; double-stranded telomeric DNA binding
GO:0032205; negative regulation of telomere maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, expressed during meiosis; db_xref=PMID:16303567; date=20101008 ||| term=name description, Meiotically Upregulated Gene; db_xref=PMID:16303567; date=20101008 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20101008 ||| term=human TERF1 and TERF2 ortholog; qualifier=predicted; db_xref=PMID:20923774; date=20101008 ||| term=name description, Telomere- associated in Yarrowia lipolytica; db_xref=PMID:20923774; date=20101008 ||| term=modification, ubiquitinated; qualifier=predicted; date=20101008" ; primary_name "mug152" ; product "Myb family telomere binding protein (predicted)" ;
chromosome1 GeneDB mRNA 2032009 2033308 . - . mRNA SPAC17H9.17c ; systematic_id "SPAC17H9.17c" ; colour "7" ; gene "mdm10 ||| SPAC17H9.17c" ; Alias "mdm10" ; db_xref "SPD:44/44A08" ; GO "GO:0032865; Mdm10/Mdm12/Mmm1 complex
GO:0005741; mitochondrial outer membrane
GO:0001401; mitochondrial sorting and assembly machinery complex
GO:0000002; mitochondrial genome maintenance
GO:0000001; mitochondrion inheritance
GO:0007005; mitochondrion organization and biogenesis
GO:0045040; protein import into mitochondrial outer membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL010C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mdm10" ; product "Mdm10/Mdm12/Mmm1 complex subunit Mdm10 (predicted)" ;
chromosome1 GeneDB mRNA 1454707 1456870 . + . mRNA SPAC3A12.18 ; systematic_id "SPAC3A12.18" ; colour "7" ; gene "zwf1 ||| SPAC3A12.18 ||| SPAC9.01" ; Alias "zwf1" ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00480; ||| SPD:25/25H07" ; synonym "SPAC9.01" ; GO "GO:0009051; pentose-phosphate shunt, oxidative branch
GO:0051156; glucose 6-phosphate metabolic process
GO:0004345; glucose-6-phosphate dehydrogenase activity
GO:0005737; cytoplasm
GO:0033554; cellular response to stress
GO:0006091; generation of precursor metabolites and energy" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, chronic non- spherocytic hemolytic anemia; date=20060920 ||| term=orthologous to S. cerevisiae YNL241C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "zwf1" ; product "glucose-6-phosphate 1-dehydrogenase (predicted)" ; EC_number "1.1.1.49" ;
chromosome1 GeneDB mRNA 3475189 3477279 . + . mRNA SPAC328.02 ; db_xref "SPD:24/24E09" ; systematic_id "SPAC328.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YKR017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human Ariadne homolog; date=20100222 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; colour "2" ; GO "GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; gene "SPAC328.02" ; product "ubiquitin-protein ligase involed in sporulation" ;
chromosome1 GeneDB mRNA 1070061 1072343 . - . mRNA SPAC1A6.03c ; db_xref "SPD:26/26D01" ; systematic_id "SPAC1A6.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104 ||| term=warning, gene structure updated; date=20030422" ; GO "GO:0004620; phospholipase activity
GO:0046475; glycerophospholipid catabolism
GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region" ; gene "SPAC1A6.03c" ; product "phospholipase (predicted)" ; EC_number "3.1.1.5" ;
chromosome1 GeneDB mRNA 4542132 4543396 . + . mRNA SPAC637.03 ; db_xref "SPD:10/10C11" ; systematic_id "SPAC637.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0016021; integral to membrane" ; colour "10" ; gene "SPAC637.03" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 3449835 3452805 . - . mRNA SPAC3A11.09 ; systematic_id "SPAC3A11.09" ; colour "2" ; gene "sod22 ||| SPAC3A11.09" ; Alias "sod22" ; db_xref "SPD:29/29A05" ; GO "GO:0071435; potassium ion export
GO:0015992; proton transport
GO:0071436; sodium ion export
GO:0005886; plasma membrane
GO:0015079; potassium ion transporter activity
GO:0015385; sodium:hydrogen antiporter activity
GO:0030007; potassium ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR138W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sod22" ; product "plasma membrane alkali metal cation/H+ antiporter Sod22" ;
chromosome1 GeneDB mRNA 4523380 4524743 . - . mRNA SPAC27D7.09c ; db_xref "SPD:51/51F03" ; systematic_id "SPAC27D7.09c" ; synonym "SPAC27D7.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe and SPAC27D7.11c and SPBC3D6.02 (paralogs); date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070723 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=warning, sequence error in genomic data; date=20090202 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, the sequence previously referred to as SPAC27D7.10c was a duplication caused by missassembly of the cosmid; cv=warning; date=20100125" ; colour "10" ; product "But2 family protein" ;
chromosome1 GeneDB mRNA 3527051 3528157 . - . mRNA SPAC16E8.14c ; systematic_id "SPAC16E8.14c" ; colour "7" ; gene "SPAC16E8.14c" ; db_xref "SPD:14/14C09" ; Alias "tae1" ; GO "GO:0005737; cytoplasm
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0008276; protein methyltransferase activity
GO:0071891; N-terminal peptidyl-proline dimethylation involved in translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR261C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tae1" ; product "AdoMet dependent proline dimethyltransferase involved in translation Tea1 (predicted)" ; reserved_name "tae1" ;
chromosome1 GeneDB mRNA 5273084 5275942 . + . mRNA SPAC2H10.01 ; db_xref "SPD:23/23C04" ; systematic_id "SPAC2H10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC2H10.01" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome1 GeneDB mRNA 3143922 3144329 . + . mRNA SPAC688.16 ; db_xref "PMID:18488015" ; systematic_id "SPAC688.16" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "8" ; gene "SPAC688.16" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4386956 4392480 . - . mRNA SPAC30.01c ; systematic_id "SPAC30.01c" ; colour "2" ; db_xref "SPD:48/48H05" ; obsolete_name "sec702" ; Alias "sec72" ; synonym "sec7b" ; GO "GO:0005798; Golgi-associated vesicle
GO:0005086; ARF guanyl-nucleotide exchange factor activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0005938; cell cortex
GO:0005635; nuclear envelope
GO:0000137; Golgi cis cisterna
GO:0000138; Golgi trans cisterna" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YDR170C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "sec72" ; product "Sec7 domain protein, ARF GEF Sec72" ;
chromosome1 GeneDB mRNA 4101303 4103183 . - . mRNA SPAC23A1.14c ; db_xref "SPD:19/19B05" ; systematic_id "SPAC23A1.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR112C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPAC23A1.14c" ; product "uncharacterised trans-sulfuration enzyme (predicted)" ;
chromosome1 GeneDB mRNA 3697508 3699837 . + . mRNA SPAC15A10.10 ; systematic_id "SPAC15A10.10" ; colour "7" ; gene "mde6 ||| SPAC15A10.10" ; Alias "mde6" ; db_xref "SPD:28/28D04" ; GO "GO:0045132; meiotic chromosome segregation
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kelch repeat protein; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; primary_name "mde6" ; product "Muskelin homolog (predicted)" ;
chromosome1 GeneDB mRNA 3991878 3992444 . - . mRNA SPAPB15E9.02c ; systematic_id "SPAPB15E9.02c" ; colour "6" ; gene "SPAPB15E9.02c" ; product "dubious" ;
chromosome1 GeneDB mRNA 1753207 1753659 . - . mRNA SPAC17A5.18c ; systematic_id "SPAC17A5.18c" ; colour "2" ; gene "rec25 ||| mug19 ||| SPAC17A5.18c" ; Alias "rec25" ; db_xref "SPD:51/51H10" ; synonym "mug19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination" ; primary_name "rec25" ; product "meiotic recombination protein Rec25" ;
chromosome1 GeneDB mRNA 5300696 5301901 . + . mRNA SPAC11E3.10 ; db_xref "SPD:52/52A07" ; systematic_id "SPAC11E3.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR112W-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC11E3.10" ; product "VanZ-like family protein" ;
chromosome1 GeneDB mRNA 3452965 3455556 . + . mRNA SPAC3A11.08 ; systematic_id "SPAC3A11.08" ; colour "2" ; gene "pcu4 ||| cul4 ||| Cul-4 ||| SPAC3A11.08" ; Alias "pcu4" ; db_xref "SPD:37/37H12" ; synonym "cul4 ||| Cul-4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10880460; date=20100708 ||| term=phenotype, chromosome condensation defects; qualifier=deletion; db_xref=PMID:10880460; date=20100708 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=deletion; db_xref=PMID:12695334; date=20100730 ||| term=modification, neddylated; cv=pt_mod; date=20060517 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Spd1; db_xref=PMID:12695334; date=20100823" ; GO "GO:0043494; Rik1-E3 ubiquitin ligase complex
GO:0031618; nuclear centric heterochromatin
GO:0005634; nucleus
GO:0008180; signalosome complex
GO:0004842; ubiquitin-protein ligase activity
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0000070; mitotic sister chromatid segregation
GO:0007535; donor selection
GO:0031507; heterochromatin formation
GO:0032876; negative regulation of DNA endoreduplication
GO:0032876; negative regulation of DNA endoreduplication
GO:0008156; negative regulation of DNA replication
GO:0045836; positive regulation of meiosis
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0051570; regulation of histone H3-K9 methylation
GO:0031060; regulation of histone methylation
GO:0006974; response to DNA damage stimulus
GO:0031048; small RNA-mediated chromatin silencing
GO:0006283; transcription-coupled nucleotide- excision repair" ; primary_name "pcu4" ; product "cullin 4" ;
chromosome1 GeneDB mRNA 3283073 3285745 . - . mRNA SPAPB1E7.02c ; systematic_id "SPAPB1E7.02c" ; colour "2" ; gene "mcl1 ||| slr3 ||| SPAPB1E7.02c" ; Alias "mcl1" ; synonym "slr3" ; GO "GO:0005658; alpha DNA polymerase:primase complex
GO:0000228; nuclear chromosome
GO:0003682; chromatin binding
GO:0005515; protein binding
GO:0006261; DNA-dependent DNA replication
GO:0000082; G1/S transition of mitotic cell cycle
GO:0007090; regulation S phase of mitotic cell cycle
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15915339; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15643072; date=19700101 ||| term=phenotype, cut; allele=mcl1-1; qualifier=low_penetrance; db_xref=PMID:12455694; date=20100727 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human WDHD1 ortholog; date=20091111 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:12455694; date=20101004" ; primary_name "mcl1" ; product "DNA polymerase alpha accessory factor Mcl1" ;
chromosome1 GeneDB mRNA 2135357 2135826 . - . mRNA SPAC23C11.02c ; systematic_id "SPAC23C11.02c" ; colour "7" ; gene "rps23 ||| SPAC23C11.02c" ; Alias "rps23" ; db_xref "SPD:03/03E10" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR118W and YPR132W; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps23" ; product "40S ribosomal protein S23 (predicted)" ;
chromosome1 GeneDB mRNA 2580100 2582976 . - . mRNA SPAC4A8.16c ; systematic_id "SPAC4A8.16c" ; colour "2" ; gene "tif33 ||| SPAC4A8.16c ||| SPAC823.01c" ; Alias "tif33" ; db_xref "SPD:49/49F04" ; obsolete_name "SPAC1E11.01c" ; synonym "SPAC823.01c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR309C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
; translation initiation factor activity
GO:0006413; translational initiation" ; primary_name "tif33" ; product "translation initiation factor eIF3c" ;
chromosome1 GeneDB mRNA 1514942 1516914 . - . mRNA SPAC57A7.12 ; db_xref "SPD:46/46A01" ; systematic_id "SPAC57A7.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR064C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "7" ; GO "GO:0051082; unfolded protein binding
GO:0006412; protein biosynthesis
GO:0005737; cytoplasm
GO:0030433; ER-associated protein catabolic process" ; gene "SPAC57A7.12" ; product "heat shock protein Pdr13 (predicted)" ;
chromosome1 GeneDB mRNA 4488616 4490376 . - . mRNA SPAC17C9.06 ; systematic_id "SPAC17C9.06" ; colour "7" ; gene "sam50 ||| SPAC17C9.06" ; Alias "sam50" ; db_xref "SPD:24/24D12" ; GO "GO:0001401; mitochondrial sorting and assembly machinery complex
GO:0043623; cellular protein complex assembly
GO:0045040; protein import into mitochondrial outer membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "sam50" ; product "mitochondrial sorting and assembly machinery complex subunit Sam50 (predicted)" ;
chromosome1 GeneDB mRNA 3722471 3723019 . + . mRNA SPAC15E1.03 ; systematic_id "SPAC15E1.03" ; colour "2" ; gene "rpl36a ||| SPAC15E1.03 ||| rpl42" ; Alias "rpl42" ; db_xref "SPD:42/42C01" ; synonym "rpl36a" ; controlled_curation "term=orthologous to S. cerevisiae YNL162W and YHR141C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=target of Set13; qualifier=methylated_by; db_xref=PMID:20444689; date=20100628 ||| term=modification, methylated; residue=lys55; db_xref=PMID:20444689; evidence=IDA; date=20100628" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl42" ; product "60S ribosomal protein L36/L42" ;
chromosome1 GeneDB mRNA 4923580 4923891 . + . mRNA SPAPB8E5.08 ; systematic_id "SPAPB8E5.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "6" ; gene "SPAPB8E5.08" ; product "dubious" ; note "unusual nucleotide composition ||| localization signal likley to be artefact" ;
chromosome1 GeneDB mRNA 55059 56308 . + . mRNA SPAC977.11 ; db_xref "SPD:41/41G12" ; systematic_id "SPAC977.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YOR390W and YPL279C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC977.11" ; product "CRCB domain protein" ;
chromosome1 GeneDB mRNA 1235667 1236965 . + . mRNA SPAC10F6.15 ; db_xref "SPD:22/22E08" ; systematic_id "SPAC10F6.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "12" ; gene "SPAC10F6.15" ; product "S. pombe specific UPF0300 family protein 1" ;
chromosome1 GeneDB mRNA 1568838 1569449 . + . mRNA SPAC1705.02 ; db_xref "SPD:42/42B02" ; obsolete_name "SPAC1F2.02c" ; systematic_id "SPAC1705.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL085C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SERF1A ortholog; date=20100718" ; colour "10" ; gene "SPAC1705.02" ; product "human 4F5S homolog" ;
chromosome1 GeneDB mRNA 4337097 4338471 . + . mRNA SPAC23D3.01 ; db_xref "SPD:19/19E01" ; systematic_id "SPAC23D3.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR455W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005634; nucleus
GO:0006338; chromatin remodeling
GO:0000790; nuclear chromatin
GO:0034770; histone H4-K20 methylation
GO:0035064; methylated histone residue binding" ; gene "SPAC23D3.01 ||| pdp3" ; product "PWWP domain protein, involved in chromatin remodeling (predicted)" ; reserved_name "pdp3" ;
chromosome1 GeneDB mRNA 3739076 3743421 . - . mRNA SPAP7G5.04c ; Alias "lys1" ; systematic_id "SPAP7G5.04c" ; colour "2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR115C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004043; L-aminoadipate-semialdehyde dehydrogenase activity
GO:0009085; lysine biosynthesis
GO:0000062; acyl-CoA binding
GO:0005737; cytoplasm" ; gene "lys1 ||| SPAP7G5.04c" ; primary_name "lys1" ; product "aminoadipate-semialdehyde dehydrogenase" ; EC_number "1.2.1.31" ;
chromosome1 GeneDB mRNA 513820 514921 . + . mRNA SPAC227.10 ; db_xref "SPD:05/05A09" ; systematic_id "SPAC227.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex" ; gene "SPAC227.10" ; product "prefoldin subunit 2 (predicted)" ;
chromosome1 GeneDB mRNA 1734600 1737187 . + . mRNA SPAC664.15 ; systematic_id "SPAC664.15" ; colour "7" ; gene "caf4 ||| SPAC664.15" ; Alias "caf4" ; obsolete_name "SPACUNK12.01 ||| SPAC25D11.02C" ; db_xref "SPD:37/37B02" ; GO "GO:0030014; CCR4-NOT complex
GO:0005741; mitochondrial outer membrane
GO:0051020; GTPase binding
GO:0006354; RNA elongation
GO:0000266; mitochondrial fission
GO:0000002; mitochondrial genome maintenance
GO:0006355; regulation of transcription, DNA- dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKR036C and YJL112W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "caf4" ; product "CCR4-Not complex subunit Caf4/Mdv1 (predicted)" ;
chromosome1 GeneDB mRNA 3637054 3638390 . + . mRNA SPAC1142.06 ; systematic_id "SPAC1142.06" ; colour "7" ; gene "SPAC1142.06 ||| get3" ; Alias "get3" ; db_xref "SPD:14/14D05" ; GO "GO:0006875; metal ion homeostasis
GO:0071248; cellular response to metal ion
GO:0005783; endoplasmic reticulum
GO:0016887; ATPase activity
GO:0043529; GET complex
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0045048; protein insertion into ER membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL100c; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "get3" ; product "GET complex ATPase subunit Get3 (predicted)" ;
chromosome1 GeneDB mRNA 2344552 2345982 . + . mRNA SPAC17G8.02 ; db_xref "SPD:14/14E01" ; systematic_id "SPAC17G8.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR400W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0070635; nicotinamide riboside hydrolase activity
GO:0070636; nicotinic acid riboside hydrolase activity
GO:0050263; ribosylpyrimidine nucleosidase activity
GO:0045437; uridine nucleosidase activity
GO:0034356; NAD biosynthesis via nicotinamide riboside salvage pathway
GO:0019358; nicotinate nucleoside salvage
GO:0046135; pyrimidine nucleoside catabolic process
GO:0008655; pyrimidine salvage" ; gene "SPAC17G8.02" ; product "uridine ribohydrolase (predicted)" ;
chromosome1 GeneDB mRNA 1511592 1512345 . - . mRNA SPAC5D6.01 ; systematic_id "SPAC5D6.01" ; colour "7" ; gene "rps2202 ||| rps22-2 ||| rps15a-2 ||| SPAC5D6.01" ; Alias "rps2202" ; synonym "rps22-2 ||| rps15a-2" ; GO "GO:0022627; cytosolic small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL190C and YLR367W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps2202" ; product "40S ribosomal protein S15a (predicted)" ;
chromosome1 GeneDB mRNA 2468576 2471987 . - . mRNA SPAC19A8.08 ; systematic_id "SPAC19A8.08" ; colour "2" ; gene "upf2 ||| SPAC19A8.08" ; Alias "upf2" ; db_xref "SPD:30/30B05" ; GO "GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "upf2" ; product "nonsense-mediated decay protein Upf2" ;
chromosome1 GeneDB mRNA 4444401 4445402 . + . mRNA SPAC9E9.05 ; db_xref "SPD:13/13B11" ; systematic_id "SPAC9E9.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC9E9.05" ; product "sequence orphan" ; note "candidate ortholog of S. cerevisiae YPR171W, similarity is low but reciprocal best hits" ;
chromosome1 GeneDB mRNA 2096336 2097985 . - . mRNA SPAC25A8.03c ; systematic_id "SPAC25A8.03c" ; colour "10" ; gene "SPAC3C7.15c ||| SPAC25A8.03c" ; Alias "SPAC3C7.15c" ; db_xref "SPD:01/01A11" ; synonym "SPAC3C7.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL162C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MIDA ortholog; date=20100728" ; GO "GO:0005739; mitochondrion" ; primary_name "SPAC3C7.15c" ; product "DUF185 protein, mitochondrial" ;
chromosome1 GeneDB mRNA 2746710 2748140 . - . mRNA SPAC6F6.08c ; systematic_id "SPAC6F6.08c" ; colour "2" ; gene "cdc16 ||| bub2 ||| SPAC6F6.08c" ; Alias "cdc16" ; db_xref "SPD:44/44A11" ; synonym "bub2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; qualifier=ts; db_xref=PMID:762020; date=20100705 ||| term=target is Spg1; db_xref=PMID:9742395; date=19700101 ||| term=orthologous to S. cerevisiae YMR055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; spindle pole body
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0007094; mitotic spindle checkpoint
GO:0005515; protein binding
GO:0005096; GTPase activator activity
GO:0031030; negative regulation of septation initiation signaling" ; primary_name "cdc16" ; product "two-component GAP Cdc16" ;
chromosome1 GeneDB mRNA 846331 848976 . - . mRNA SPAC521.04c ; db_xref "SPD:38/38G04" ; systematic_id "SPAC521.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL321W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0006812; cation transport
GO:0016021; integral to membrane
GO:0008324; cation transporter activity" ; gene "SPAC521.04c" ; product "calcium permease (predicted)" ;
chromosome1 GeneDB mRNA 1509597 1511278 . + . mRNA SPAC5D6.02c ; systematic_id "SPAC5D6.02c" ; colour "8" ; gene "SPAC5D6.02c ||| mug165" ; note "chromatin association inferred from composition, localization and low similarity to transcriptional regulators" ; Alias "mug165" ; db_xref "SPD:12/12D09" ; GO "GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug165" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2885255 2886721 . + . mRNA SPACUNK4.13c ; db_xref "SPD:21/21D04" ; systematic_id "SPACUNK4.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=orthologous to S. cerevisiae YBR025C and YHL014c; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005737; cytoplasm
GO:0005525; GTP binding
GO:0007264; small GTPase mediated signal transduction" ; gene "SPACUNK4.13c" ; product "GTPase Ylf2 (predicted)" ;
chromosome1 GeneDB mRNA 3656449 3657570 . - . mRNA SPAC8C9.09c ; systematic_id "SPAC8C9.09c" ; colour "8" ; gene "SPAC8C9.09c ||| mug129" ; db_xref "SPD:12/12E08" ; Alias "mug129" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug129" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1678182 1680097 . - . mRNA SPAC343.17c ; db_xref "SPD:45/45H03" ; systematic_id "SPAC343.17c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0000132; establishment of mitotic spindle orientation" ; gene "SPAC343.17c" ; product "WD repeat protein, human WDR70 family" ;
chromosome1 GeneDB mRNA 4313118 4318670 . - . mRNA SPAC25G10.09c ; systematic_id "SPAC25G10.09c" ; colour "7" ; gene "SPAC25G10.09c ||| SPAC27F1.01c ||| pan1" ; Alias "pan1" ; db_xref "SPD:48/48H03" ; synonym "SPAC27F1.01c" ; GO "GO:0005509; calcium ion binding
GO:0006897; endocytosis
GO:0005938; cell cortex
GO:0005634; nucleus
GO:0000147; actin cortical patch assembly
GO:0030479; actin cortical patch
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YIR006C; date=19700101 ||| term=target of Ark1/Prk1 family kinases; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pan1" ; product "actin cortical patch component, with EF hand and WH2 motif Panl (predicted)" ; reserved_name "pan1" ;
chromosome1 GeneDB mRNA 3448352 3449837 . + . mRNA SPAC3A11.10c ; db_xref "SPD:19/19E11" ; systematic_id "SPAC3A11.10c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPAC3A11.10c" ; product "dipeptidyl peptidase (predicted)" ; EC_number "3.4.13.19" ;
chromosome1 GeneDB mRNA 4821040 4822635 . - . mRNA SPAC20G4.04c ; systematic_id "SPAC20G4.04c" ; colour "2" ; db_xref "SPD:17/17A02" ; Alias "hus1" ; GO "GO:0030896; checkpoint clamp complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031574; S-M checkpoint
GO:0031573; intra-S DNA damage checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007095; mitotic cell cycle G2-M transition DNA damage checkpoint" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, phosphorylated; qualifier=during_DNA_damage; cv=pt_mod; db_xref=PMID:9524127; date=20090213 ||| term=orthologous to S. cerevisiae YLR288C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Hydroxy Urea Sensitive; cv=name_description; date=20090729 ||| term=phenotype, sensitive to HU; cv=phenotype; date=20090729" ; primary_name "hus1" ; product "checkpoint clamp complex protein Hus1" ;
chromosome1 GeneDB mRNA 2133242 2135021 . + . mRNA SPAC23C11.01 ; db_xref "SPD:25/25E01" ; systematic_id "SPAC23C11.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL090W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane" ; gene "SPAC23C11.01" ; product "ER membrane protein, ICE2 family" ;
chromosome1 GeneDB mRNA 4445830 4447486 . - . mRNA SPAC9E9.06c ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00750; ||| SPD:25/25G02" ; systematic_id "SPAC9E9.06c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR053W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009088; threonine biosynthesis
GO:0004795; threonine synthase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC9E9.06c" ; product "threonine synthase (predicted)" ; EC_number "4.2.3.1" ;
chromosome1 GeneDB mRNA 5022781 5023824 . - . mRNA SPAC22E12.03c ; db_xref "SPD:07/07G07" ; systematic_id "SPAC22E12.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Parkinson's disease; db_xref=PMID:17138626; date=20061211 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human PARK7 ortholog; date=20091005 ||| term=disease associated, neurological disorders; date=20100621" ; colour "10" ; gene "SPAC22E12.03c" ; product "ThiJ domain protein" ;
chromosome1 GeneDB mRNA 4619684 4622156 . + . mRNA SPAC1093.05 ; db_xref "SPD:46/46F09" ; systematic_id "SPAC1093.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YJL033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human DDX10 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; GO "GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus
GO:0004004; ATP-dependent RNA helicase activity" ; gene "SPAC1093.05" ; product "ATP-dependent RNA helicase Hca4 (predicted)" ;
chromosome1 GeneDB mRNA 4208450 4208847 . - . mRNA SPAC694.05c ; systematic_id "SPAC694.05c" ; colour "7" ; gene "rps2502 ||| rps25-2 ||| rps25 ||| SPAC694.05c" ; Alias "rps2502" ; db_xref "SPD:02/02F03" ; synonym "rps25-2 ||| rps25" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR027C and YLR333C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rps2502" ; product "40S ribosomal protein S25 (predicted)" ;
chromosome1 GeneDB mRNA 3507605 3508277 . - . mRNA SPAC16E8.05c ; systematic_id "SPAC16E8.05c" ; colour "8" ; gene "mde1 ||| SPAC16E8.05c" ; Alias "mde1" ; db_xref "SPD:07/07G05" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mde1" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2697418 2698145 . - . mRNA SPAC644.13c ; db_xref "SPD:07/07G10" ; systematic_id "SPAC644.13c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Yip1 family; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0016192; vesicle-mediated transport
GO:0017137; Rab GTPase binding
GO:0012505; endomembrane system
GO:0006886; intracellular protein transport" ; gene "SPAC644.13c" ; product "Rab GTPase binding (predicted)" ;
chromosome1 GeneDB mRNA 1145443 1146598 . + . mRNA SPAC56F8.11 ; systematic_id "SPAC56F8.11" ; colour "7" ; gene "spc3 ||| SPAC56F8.11" ; Alias "spc3" ; db_xref "SPD:10/10E04" ; GO "GO:0005787; signal peptidase complex
GO:0045047; protein targeting to ER
GO:0006465; signal peptide processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR066W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spc3" ; product "signal peptidase subunit Spc3 (predicted)" ;
chromosome1 GeneDB mRNA 2443937 2445037 . - . mRNA SPAC32A11.04c ; systematic_id "SPAC32A11.04c" ; colour "7" ; gene "tif212 ||| tif22 ||| SPAC6B12.17c ||| SPAC32A11.04c" ; Alias "tif212" ; db_xref "SPD:15/15H05" ; synonym "tif22 ||| SPAC6B12.17c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL237W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005850; eukaryotic translation initiation factor 2 complex
GO:0043614; multi-eIF complex
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation" ; primary_name "tif212" ; product "translation initiation factor eIF2 beta subunit (predicted)" ;
chromosome1 GeneDB mRNA 3246488 3247705 . - . mRNA SPAC6G9.03c ; systematic_id "SPAC6G9.03c" ; colour "7" ; gene "SPAC6G9.03c ||| mug183" ; Alias "mug183" ; db_xref "SPD:17/17C11" ; GO "GO:0005634; nucleus
GO:0006342; chromatin silencing
GO:0006334; nucleosome assembly
GO:0042393; histone binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, histone chaperone; cv=m_f_g; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YNL206C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug183" ; product "histone chaperone Rtt106-like (predicted)" ;
chromosome1 GeneDB mRNA 2576377 2577916 . + . mRNA SPAC4A8.14 ; systematic_id "SPAC4A8.14" ; colour "7" ; gene "SPAC4A8.14" ; note "prs1 is the primary name for SPBC19C7.06 using unified nomenclature for tRNA ligases" ; obsolete_name "prs1" ; db_xref "SPD:50/50E09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL068W and YER099C and YHL011C and YKL181W and YOL061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0005737; cytoplasm
GO:0004749; ribose phosphate diphosphokinase activity
GO:0006189; 'de novo' IMP biosynthesis
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0000105; histidine biosynthesis
GO:0006166; purine ribonucleoside salvage
GO:0000162; tryptophan biosynthesis" ; product "ribose-phosphate pyrophosphokinase (predicted)" ; EC_number "2.7.6.1" ;
chromosome1 GeneDB mRNA 4791890 4795077 . + . mRNA SPAC22F8.05 ; db_xref "SPD:38/38H06" ; systematic_id "SPAC22F8.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR261C and YML100W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0003825; alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0005992; trehalose biosynthesis
GO:0005946; alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)" ; gene "SPAC22F8.05" ; product "alpha,alpha-trehalose-phosphate synthase (predicted)" ;
chromosome1 GeneDB mRNA 21587 22508 . + . mRNA SPAC212.04c ; systematic_id "SPAC212.04c" ; colour "12" ; gene "SPAC212.04c" ; note "repeat expansion SQRSQRS" ; db_xref "SPD:52/52D12" ; GO "GO:0009897; external side of plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; product "S. pombe specific DUF999 family protein 1" ;
chromosome1 GeneDB mRNA 5505621 5508487 . + . mRNA SPAC869.05c ; db_xref "SPD:29/29B12" ; systematic_id "SPAC869.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR294W and YLR092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0008272; sulfate transport
GO:0005886; plasma membrane
GO:0015116; sulfate transporter activity" ; gene "SPAC869.05c" ; product "sulfate transporter (predicted)" ;
chromosome1 GeneDB mRNA 4027058 4034046 . + . mRNA SPAC27E2.09 ; systematic_id "SPAC27E2.09" ; colour "2" ; gene "mak2 ||| phk1 ||| SPAC27E2.09" ; Alias "mak2" ; db_xref "SPD:34/34C08" ; synonym "phk1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11758939; date=19700101 ||| term=PAC domain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Sty1; qualifier=phosphorylates; db_xref=PMID:17072883; date=20100820" ; GO "GO:0005737; cytoplasm
GO:0004673; protein histidine kinase activity
GO:0000155; two-component sensor activity
GO:0006468; protein amino acid phosphorylation
GO:0031137; regulation of conjugation with cellular fusion
GO:0007346; regulation of progression through mitotic cell cycle
GO:0034599; cellular response to oxidative stress
GO:0031098; stress-activated protein kinase signaling pathway
GO:0000160; two-component signal transduction system (phosphorelay)" ; primary_name "mak2" ; product "histidine kinase Mak2" ;
chromosome1 GeneDB mRNA 5485106 5486147 . + . mRNA SPAC922.06 ; systematic_id "SPAC922.06" ; colour "7" ; gene "SPAC922.06" ; note "YNL202W, but possibly not functional orthologs as pombe seems to be missing this peroxisomal beta oxidation pathway" ; db_xref "SPD:09/09F09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=orthologous to S. cerevisiae YNL202W; date=20070723" ; GO "GO:0004316; 3-oxoacyl-[acyl-carrier- protein]reductase activity
GO:0006633; fatty acid biosynthetic process
GO:0009105; lipoic acid biosynthetic process
GO:0009060; aerobic respiration" ; product "3-oxoacyl-[acyl-carrier-protein]reductase(predicted)" ; EC_number "1.1.1.100" ;
chromosome1 GeneDB mRNA 4200185 4205538 . + . mRNA SPAC694.02 ; db_xref "SPD:48/48G12" ; systematic_id "SPAC694.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=helicase C-terminal domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPAC694.02" ; product "DEAD/DEAH box helicase" ;
chromosome1 GeneDB mRNA 2102331 2103980 . + . mRNA SPAC25A8.02 ; db_xref "SPD:18/18E11" ; systematic_id "SPAC25A8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC25A8.02" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 168810 170017 . - . mRNA SPAC5H10.13c ; systematic_id "SPAC5H10.13c" ; colour "7" ; gene "gmh2 ||| SPAC5H10.13c" ; Alias "gmh2" ; db_xref "SPD:15/15G07" ; GO "GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0042125; protein amino acid galactosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "gmh2" ; product "alpha-1,2-galactosyltransferase Gmh2 (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB mRNA 366801 367531 . + . mRNA SPAC630.11 ; systematic_id "SPAC630.11" ; colour "7" ; gene "vps55 ||| SPAC630.11" ; Alias "vps55" ; db_xref "SPD:43/43A05" ; GO "GO:0006886; intracellular protein transport
GO:0045324; late endosome to vacuole transport
GO:0005770; late endosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR044C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps55" ; product "vacuolar sorting protein Vps55 (predicted)" ;
chromosome1 GeneDB mRNA 4940553 4941486 . - . mRNA SPAC1B3.07c ; systematic_id "SPAC1B3.07c" ; colour "2" ; gene "vps28 ||| SPAC1B3.07c" ; Alias "vps28" ; db_xref "SPD:09/09B01" ; GO "GO:0000813; ESCRT I complex
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps28" ; product "ESCRT I complex subunit Vps28" ;
chromosome1 GeneDB mRNA 625415 631303 . - . mRNA SPAC1F3.06c ; systematic_id "SPAC1F3.06c" ; colour "2" ; gene "spo15 ||| SPAC1F3.06c" ; note "possible ortholog of S. cerevisiae SPO21" ; Alias "spo15" ; db_xref "SPD:48/48H10" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0031322; prospore-specific spindle pole body modification
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030437; ascospore formation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "spo15" ; product "sporulation protein Spo15" ;
chromosome1 GeneDB mRNA 190258 191291 . + . mRNA SPAC13G6.09 ; db_xref "SPD:13/13G11" ; systematic_id "SPAC13G6.09" ; GO "GO:0030490; maturation of SSU-rRNA" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL022C; date=19700101 ||| term=human PDCD2 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; product "SSU-rRNA maturation protein Tsr4 homolog 2 (predicted)" ;
chromosome1 GeneDB mRNA 5219635 5220013 . - . mRNA SPAC19D5.11c ; systematic_id "SPAC19D5.11c" ; colour "7" ; db_xref "SPD:52/52C02" ; Alias "ctf8" ; GO "GO:0031390; Ctf18 RFC-like complex
GO:0003689; DNA clamp loader activity
GO:0000790; nuclear chromatin
GO:0007062; sister chromatid cohesion
GO:0031390; nuclear replication fork" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16040599; date=19700101 ||| term=orthologous to S. cerevisiae YHR191C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, new gene; attribution=pers. comm. S. MacNeill; date=20100505" ; primary_name "ctf8" ; product "DNA replication factor C complex subunit Ctf8 (predicted)" ;
chromosome1 GeneDB mRNA 2614767 2617321 . + . mRNA SPAC7D4.12c ; db_xref "SPD:38/38B05" ; systematic_id "SPAC7D4.12c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL107C; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20081203" ; colour "10" ; gene "SPAC7D4.12c" ; product "DUF1212 family protein" ;
chromosome1 GeneDB mRNA 5726 6331 . - . mRNA SPAC212.10 ; systematic_id "SPAC212.10" ; pseudo "_no_value" ; controlled_curation "term=warning, appears to be truncated; date=20091223" ; colour "13" ; gene "SPAC212.10" ; product "pseudogene malic acid transport protein" ; note "removed as part of UTR of SPAC212.11 and truncted with respect to paralogs" ;
chromosome1 GeneDB mRNA 3882010 3883261 . + . mRNA SPAC1071.11 ; db_xref "SPD:08/08H01" ; systematic_id "SPAC1071.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; gene "SPAC1071.11" ; product "NADH-dependent flavin oxidoreductase (predicted)" ;
chromosome1 GeneDB mRNA 5578447 5579133 . - 0 mRNA SPAC750.08c ; systematic_id "SPAC750.08c" ; codon_start "1" ; controlled_curation "term=orthologous to S. cerevisiae YKL029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0004470; malic enzyme activity
GO:0006520; amino acid metabolism
GO:0006090; pyruvate metabolism
GO:0005739; mitochondrion
GO:0006108; malate metabolism
GO:0051287; NAD binding" ; gene "SPAC750.08c" ; product "NAD-dependent malic enzyme (predicted), partial" ;
chromosome1 GeneDB mRNA 159880 160945 . - . mRNA SPAC5H10.08c ; systematic_id "SPAC5H10.08c" ; colour "2" ; gene "SPAC5H10.08c ||| pan6" ; note "possibly coexpressed with SPAC5H10.09c which is also involved in pantothenate biosynthesis" ; Alias "pan6" ; db_xref "SPD:11/11B08" ; GO "GO:0015940; pantothenate biosynthesis
GO:0004592; pantoate-beta-alanine ligase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL145C; date=19700101 ||| term=warning, co-expressed with adjacent gene; qualifier=predicted; date=20100821 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "pan6" ; product "pantoate-beta-alanine ligase" ; EC_number "6.3.2.1" ;
chromosome1 GeneDB mRNA 1564216 1568217 . - . mRNA SPAC167.08 ; Alias "Tf2-2" ; systematic_id "SPAC167.08" ; synonym "SPAC1705.01c" ; colour "4" ; controlled_curation "term=tf2-type transposon; date=19700101" ; gene "SPAC167.08 ||| Tf2-2" ; primary_name "Tf2-2" ; product "retrotransposable element" ;
chromosome1 GeneDB mRNA 1938900 1940411 . + . mRNA SPAC3H1.05 ; db_xref "SPD:24/24B09" ; systematic_id "SPAC3H1.05" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR117W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human ZMPSTE24 ortholog; date=20091106 ||| term=disease associated, progeroid disorders; date=20091106" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0004222; metalloendopeptidase activity
GO:0071586; CAAX-box protein processing" ; gene "SPAC3H1.05" ; product "CAAX prenyl protease (predicted)" ; EC_number "3.4.24.-" ;
chromosome1 GeneDB mRNA 2891049 2892803 . - . mRNA SPACUNK4.10 ; db_xref "SPD:22/22H01" ; systematic_id "SPACUNK4.10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL274C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0009436; glyoxylate catabolic process
GO:0047964; glyoxylate reductase activity
GO:0006111; regulation of gluconeogenesis" ; gene "SPACUNK4.10" ; product "glyoxylate reductase (predicted)" ;
chromosome1 GeneDB mRNA 935012 936001 . - . mRNA SPAC1687.17c ; db_xref "SPD:08/08H12" ; systematic_id "SPAC1687.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YDR411C and YBR201W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0030433; ER-associated protein catabolism" ; gene "SPAC1687.17c" ; product "Der1-like (degradation in the ER) family (predicted)" ;
chromosome1 GeneDB mRNA 2348345 2349747 . - . mRNA SPAC17G8.04c ; systematic_id "SPAC17G8.04c" ; colour "2" ; gene "arc15 ||| SPAC17G8.04c ||| arc5" ; Alias "arc5" ; db_xref "SPD:08/08E06" ; synonym "arc15" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; contractile ring
GO:0031097; medial ring
GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0000147; actin cortical patch assembly
GO:0006897; endocytosis" ; primary_name "arc5" ; product "ARP2/3 actin-organizing complex subunit Arc5" ;
chromosome1 GeneDB mRNA 2789063 2789590 . + . mRNA SPAC1805.18 ; Alias "new2" ; systematic_id "SPAC1805.18" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "new2" ; gene "SPAC1805.18" ; product "sequence orphan" ; note "conserved in japonicus" ;
chromosome1 GeneDB mRNA 2263667 2265208 . + . mRNA SPAC4G9.07 ; systematic_id "SPAC4G9.07" ; colour "12" ; gene "SPAC4G9.07 ||| mug133" ; Alias "mug133" ; obsolete_name "B8647-3" ; db_xref "SPD:44/44H10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; primary_name "mug133" ; product "S. pombe specific UPF0300 family protein 2" ;
chromosome1 GeneDB mRNA 2355278 2356541 . - . mRNA SPAC17G8.08c ; db_xref "SPD:17/17H03" ; systematic_id "SPAC17G8.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR187W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC17G8.08c" ; product "human TMEM165 homolog" ;
chromosome1 GeneDB mRNA 3108393 3108885 . - . mRNA SPAC589.10c ; db_xref "SPD:41/41C01" ; systematic_id "SPAC589.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ribosomal-ubiquitin fusion protein; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=warning, identical paralog; cv=warning; date=19700101 ||| term=orthologous to S. cerevisiae YLR167W; date=19700101 ||| term=phenotype, cell cycle defects; qualifier=overexpression; db_xref=PMID:12237855; cv=phenotype; date=20080728 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0003735; structural constituent of ribosome
GO:0016567; protein ubiquitination
GO:0042254; ribosome biogenesis and assembly" ; gene "SPAC589.10c" ; product "ribomal-ubiquitin fusion protein Ubi5 (predicted)" ;
chromosome1 GeneDB mRNA 2814305 2815405 . + . mRNA SPAC1B2.04 ; systematic_id "SPAC1B2.04" ; colour "7" ; gene "cox6 ||| SPAC1B2.04" ; Alias "cox6" ; db_xref "SPD:10/10G12" ; GO "GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration
GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0006123; mitochondrial electron transport, cytochrome c to oxygen" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cox6" ; product "cytochrome c oxidase subunit VI (predicted)" ;
chromosome1 GeneDB mRNA 1979243 1982155 . - . mRNA SPAC9G1.06c ; systematic_id "SPAC9G1.06c" ; colour "7" ; gene "cyk3 ||| SPAC9G1.06c" ; db_xref "SPD:47/47B08" ; Alias "cyk3" ; GO "GO:0005826; contractile ring
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL117W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "cyk3" ; product "cytokinesis protein Cyk3 (predicted)" ;
chromosome1 GeneDB mRNA 1354204 1357138 . + . mRNA SPAC19E9.02 ; systematic_id "SPAC19E9.02" ; colour "2" ; gene "fin1 ||| SPAC19E9.02" ; Alias "fin1" ; db_xref "SPD:28/28H11" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0007076; mitotic chromosome condensation
GO:0031030; negative regulation of septation initiation signaling
GO:0006468; protein amino acid phosphorylation
GO:0034613; cellular protein localization
GO:0007346; regulation of progression through mitotic cell cycle
GO:0031028; septation initiation signaling
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YAR018C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9490640; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "fin1" ; product "serine/threonine protein kinase, NIMA related Fin1" ;
chromosome1 GeneDB mRNA 418175 419827 . - . mRNA SPAC31A2.15c ; systematic_id "SPAC31A2.15c" ; colour "2" ; db_xref "SPD:19/19B01" ; Alias "dcc1" ; GO "GO:0007062; sister chromatid cohesion
GO:0031390; Ctf18 RFC-like complex
GO:0003689; DNA clamp loader activity
GO:0045132; meiotic chromosome segregation
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16040599; date=19700101 ||| term=orthologous to S. cerevisiae YCL016C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dcc1" ; product "Ctf18 RFC-like complex subunit Dcc1" ;
chromosome1 GeneDB mRNA 5052648 5054683 . - . mRNA SPAC22E12.17c ; systematic_id "SPAC22E12.17c" ; colour "7" ; gene "glo3 ||| SPAC22E12.17c" ; Alias "glo3" ; db_xref "SPD:45/45B05" ; GO "GO:0030126; COPI vesicle coat
GO:0030137; COPI-coated vesicle
GO:0005793; ER-Golgi intermediate compartment
GO:0008060; ARF GTPase activator activity
GO:0048205; COPI coating of Golgi vesicle
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YER122C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "glo3" ; product "ARF GTPase activating protein (predicted)" ;
chromosome1 GeneDB mRNA 2504766 2505868 . - . mRNA SPAC23H3.07c ; systematic_id "SPAC23H3.07c" ; colour "7" ; gene "SPAC23H3.07c ||| mrp2" ; Alias "mrp2" ; db_xref "SPD:03/03B08" ; GO "GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrp2" ; product "mitochondrial ribosomal protein subunit S14 (predicted)" ;
chromosome1 GeneDB mRNA 3596472 3598799 . - . mRNA SPAC17G6.05c ; db_xref "SPD:28/28D03" ; systematic_id "SPAC17G6.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL084W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006511; ubiquitin-dependent protein catabolism
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolism via the MVB pathway
GO:0005737; cytoplasm
GO:0005768; endosome" ; gene "SPAC17G6.05c" ; product "Rhophilin-2 homolog (predicted)" ;
chromosome1 GeneDB mRNA 1415452 1418750 . - . mRNA SPAC20G8.09c ; db_xref "SPD:48/48A10" ; obsolete_name "nat10" ; systematic_id "SPAC20G8.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL132W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005730; nucleolus
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0042274; ribosome small subunit biogenesis
GO:0030686; 90S preribosome
GO:0070317; negative regulation of G1 to G0 transition" ; product "ribosome biogenesis ATPase (predicted)" ;
chromosome1 GeneDB mRNA 2740496 2741269 . + . mRNA SPAC6F6.05 ; systematic_id "SPAC6F6.05" ; colour "7" ; gene "SPAC6F6.05" ; Alias "ost2" ; db_xref "SPD:03/03D08" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR103C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ost2" ; product "oligosaccharyltransferase epsilon subunit Ost2 (predicted)" ; EC_number "2.4.1.119" ;
chromosome1 GeneDB mRNA 2674992 2675981 . - . mRNA SPAC4F8.01 ; systematic_id "SPAC4F8.01" ; colour "2" ; gene "SPAC4F8.01 ||| SPAC644.03c ||| did4 ||| vps2" ; Alias "did4" ; db_xref "SPD:11/11G06" ; synonym "SPAC644.03c ||| vps2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport
GO:0000815; ESCRT III complex
GO:0045053; protein retention in Golgi" ; primary_name "did4" ; product "vacuolar sorting protein Did4" ;
chromosome1 GeneDB mRNA 2378706 2380300 . - . mRNA SPAC22H10.05c ; db_xref "SPD:24/24F01" ; systematic_id "SPAC22H10.05c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR250C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human HEAB ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; GO "GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation
GO:0005849; mRNA cleavage factor complex
GO:0031124; mRNA 3'-end processing" ; gene "SPAC22H10.05c" ; product "mRNA cleavage and polyadenylation specificity factor complex subunit (predicted)" ;
chromosome1 GeneDB mRNA 4248768 4250088 . + . mRNA SPAC1F7.12 ; systematic_id "SPAC1F7.12" ; colour "2" ; gene "yak3 ||| SPAC1F7.12 ||| yakC ||| SPAC21E11.01" ; Alias "yak3" ; db_xref "SPD:15/15C12" ; synonym "yakC ||| SPAC21E11.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100927 ||| term=species distribution, conserved in Eukaryotes; date=20100927 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100927" ; GO "GO:0016614; oxidoreductase activity, acting on CH- OH group of donors
GO:0050235; pyridoxal 4-dehydrogenase activity" ; primary_name "yak3" ; product "aldose reductase ARK13 family YakC" ;
chromosome1 GeneDB mRNA 4691803 4693384 . + . mRNA SPAC1834.01 ; systematic_id "SPAC1834.01" ; colour "2" ; gene "sup45 ||| SPAC1834.01" ; Alias "sup45" ; db_xref "SPD:32/32G12" ; GO "GO:0005829; cytosol
GO:0018444; translation release factor complex
GO:0016149; translation release factor activity, codon specific
GO:0006415; translational termination" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR143C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "sup45" ; product "translation release factor eRF1" ;
chromosome1 GeneDB mRNA 237212 237430 . - . mRNA SPAC806.11 ; systematic_id "SPAC806.11" ; controlled_curation "term=warning, longest ORF in feature; cv=warning; date=20060721" ; colour "6" ; gene "SPAC806.11" ; product "dubious" ;
chromosome1 GeneDB mRNA 3185470 3186249 . + . mRNA SPAC1486.01 ; systematic_id "SPAC1486.01" ; colour "7" ; gene "SPAC1486.01" ; obsolete_name "sod2" ; db_xref "SPD:09/09G05" ; GO "GO:0005759; mitochondrial matrix
GO:0030145; manganese ion binding
GO:0004784; superoxide dismutase activity
GO:0034614; cellular response to reactive oxygen species
GO:0006801; superoxide metabolism
GO:0001320; age-dependent response to reactive oxygen species during chronological cell aging" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR008C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; product "manganese superoxide dismutase (predicted)" ; EC_number "1.15.1.1" ;
chromosome1 GeneDB mRNA 3818668 3820526 . + . mRNA SPAC1F12.09 ; systematic_id "SPAC1F12.09" ; colour "7" ; gene "gpi17 ||| SPAC1F12.09" ; Alias "gpi17" ; db_xref "SPD:36/36A11" ; GO "GO:0016255; attachment of GPI anchor to protein
GO:0042765; GPI-anchor transamidase complex
GO:0003923; GPI-anchor transamidase activity" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR434W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gpi17" ; product "pig-S (predicted)" ;
chromosome1 GeneDB mRNA 2607835 2609156 . + . mRNA SPAC823.15 ; systematic_id "SPAC823.15" ; colour "2" ; gene "ppa1 ||| SPAC823.15" ; Alias "ppa1" ; db_xref "SPD:13/13A05" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0007346; regulation of mitotic cell cycle
GO:0006417; regulation of translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PP2A; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:2170029; date=19700101 ||| term=orthologous to S. cerevisiae YDL134C and YDL188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppa1" ; product "minor serine/threonine protein phosphatase Ppa1" ; EC_number "3.1.3.16" ;
chromosome1 GeneDB mRNA 5438212 5438553 . + . mRNA SPAC29B12.12 ; db_xref "SPD:02/02A11" ; systematic_id "SPAC29B12.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CHY; date=19700101 ||| term=orthologous to S. cerevisiae YKL084W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0045041; protein import into mitochondrial intermembrane space" ; gene "SPAC29B12.12" ; product "helper of TIM (predicted)" ;
chromosome1 GeneDB mRNA 2573294 2574506 . - . mRNA SPAC4A8.12c ; systematic_id "SPAC4A8.12c" ; colour "2" ; gene "sds22 ||| SPAC4A8.12c" ; Alias "sds22" ; db_xref "SPD:49/49A05" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008287; protein serine/threonine phosphatase complex
GO:0071862; protein phosphatase type1 activator activity
GO:0051457; maintenance of protein location in nucleus
GO:0000070; mitotic sister chromatid segregation
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; db_xref=PMID:1846086; date=19700101 ||| term=orthologous to S. cerevisiae YKL193C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "sds22" ; product "protein phosphatase regulatory subunit Sds22" ;
chromosome1 GeneDB mRNA 2381320 2381601 . - . mRNA SPAC22H10.06c ; db_xref "SPD:01/01C09" ; systematic_id "SPAC22H10.06c" ; colour "6" ; gene "SPAC22H10.06c" ; product "dubious" ;
chromosome1 GeneDB mRNA 2845983 2848571 . + . mRNA SPAC3F10.13 ; systematic_id "SPAC3F10.13" ; colour "2" ; gene "ucp6 ||| SPAC3F10.13" ; Alias "ucp6" ; db_xref "SPD:36/36G08" ; GO "GO:0043130; ubiquitin binding
GO:0031593; polyubiquitin binding
GO:0016579; protein deubiquitination
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR138c; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "ucp6" ; product "UBA domain protein Ucp6" ;
chromosome1 GeneDB mRNA 2679468 2682362 . - . mRNA SPAC644.06c ; systematic_id "SPAC644.06c" ; colour "2" ; db_xref "SPD:36/36C10" ; Alias "cdr1" ; synonym "nim1" ; GO "GO:0005737; cytoplasm
GO:0071341; medial cortical node
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0045736; negative regulation of cyclin- dependent protein kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0007089; traversing start control point of mitotic cell cycle
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL024W and YDR507C and YKL101W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:3448096; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=localization dependent on Cdr2; db_xref=PMID:19474789; date=20090826 ||| term=target is Wee1; qualifier=phosphorylates; db_xref=PMID:7681363; date=20091213 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:3448096; date=20100708 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:3453113; date=20100708 ||| term=phenotype, cell morphology, small cells; db_xref=PMID:3453113; qualifier=overexpression; date=20101124" ; primary_name "cdr1" ; product "NIM1 familiy serine/threonine protein kinase Cdr1/Nim1" ;
chromosome1 GeneDB mRNA 1092423 1094290 . + . mRNA SPAC30D11.14c ; systematic_id "SPAC30D11.14c" ; colour "7" ; gene "SPAC30D11.14c" ; note "involved in mRNA splicing (pers. comm. J.A. Potashkin)" ; db_xref "SPD:25/25G04" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=KH domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB mRNA 698033 702533 . - . mRNA SPAC22F3.04 ; systematic_id "SPAC22F3.04" ; colour "10" ; gene "SPAC22F3.04 ||| mug62" ; db_xref "SPD:30/30H07" ; Alias "mug62" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR093C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "mug62" ; product "AMP binding enzyme (predicted)" ;
chromosome1 GeneDB mRNA 3533705 3535127 . - . mRNA SPAC16E8.18c ; systematic_id "SPAC16E8.18c" ; colour "8" ; note "reinstated old SPAC16E8.18c but added splice site and exon; matches transcriptome data; no homology" ; obsolete_name "SPNCRNA.223" ; Alias "tam5" ; synonym "SPNG664 ||| SPNGAF2" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; primary_name "tam5" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1387944 1390522 . + . mRNA SPAC20G8.01 ; systematic_id "SPAC20G8.01" ; colour "2" ; gene "cdc17 ||| SPAC20G8.01" ; Alias "cdc17" ; obsolete_name "SPAC57A10.13c" ; db_xref "SPD:28/28F07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705 ||| term=orthologous to S. cerevisiae YDL164C; date=19700101 ||| term=complementation, functionally complemented by S. cerevisiae CDC9; db_xref=PMID:6347688; cv=complementation; date=19700101 ||| term=complementation, does not functionally complement S. cerevisiae CDC9; db_xref=PMID:3011605; cv=complementation; date=19700101 ||| term=gene expression, expression induced by UV; db_xref=PMID:3329047; cv=gene_ex; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14752051; date=20071210 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, alternative translation; cv=gene_ex; date=20090908 ||| term=disease associated, immunodeficiency; date=20090908 ||| term=disease associated, cancer; date=20090908 ||| term=protein sequence feature, mitochondrial signal sequence; cv=sequence_feature; residue=1-20; db_xref=PMID:14752051; date=20091216" ; GO "GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0003910; DNA ligase (ATP) activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006310; DNA recombination
GO:0043137; DNA replication, removal of RNA primer
GO:0006284; base-excision repair
GO:0006273; lagging strand elongation
GO:0006289; nucleotide-excision repair
GO:0000723; telomere maintenance
GO:0007090; regulation of S-phase of mitotic cell cycle" ; primary_name "cdc17" ; product "ATP-dependent DNA ligase Cdc17" ; EC_number "6.5.1.1" ;
chromosome1 GeneDB mRNA 4342209 4344025 . - . mRNA SPAC23D3.04c ; systematic_id "SPAC23D3.04c" ; colour "2" ; gene "gpd2 ||| SPAC23D3.04c" ; Alias "gpd2" ; db_xref "SPD:17/17F06" ; GO "GO:0005737; cytoplasm
GO:0004367; glycerol-3-phosphate dehydrogenase (NAD+) activity
GO:0006116; NADH oxidation
GO:0006114; glycerol biosynthesis
GO:0051287; NAD or NADPH binding
GO:0046168; glycerol-3-phosphate catabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "gpd2" ; product "glycerol-3-phosphate dehydrogenase Gpd2" ; EC_number "1.1.1.8" ;
chromosome1 GeneDB mRNA 2630448 2633520 . - . mRNA SPAC7D4.04 ; systematic_id "SPAC7D4.04" ; colour "2" ; gene "taf1 ||| SPAC7D4.04" ; Alias "taf1" ; db_xref "SPD:29/29D07" ; synonym "cvt9 ||| atg11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YPR049C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Metazoa; date=20090202 ||| term=species distribution, conserved in Vertebrates; date=20090202" ; GO "GO:0019898; extrinsic to membrane
GO:0000407; pre-autophagosomal structure
GO:0005515; protein binding
GO:0032258; CVT pathway
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0030242; peroxisome degradation
GO:0034497; protein localization to pre- autophagosomal structure
GO:0006623; protein targeting to vacuole
GO:0000723; telomere maintenance" ; primary_name "taf1" ; product "Taz1 interacting factor 1, autophagy protein" ;
chromosome1 GeneDB mRNA 2977811 2979298 . + . mRNA SPAPB1A11.01 ; systematic_id "SPAPB1A11.01" ; colour "7" ; gene "SPAPB24D3.11 ||| SPAPB1A11.01" ; Alias "mfc1" ; synonym "SPAPB24D3.11" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPBC1348.05 and SPCC1529.01 and SPBPB2B2.16c and SPAC750.02c; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0055085; transmembrane transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; primary_name "mfc1" ; product "membrane transporter (predicted)" ; reserved_name "mfc1" ;
chromosome1 GeneDB mRNA 4958706 4960962 . - . mRNA SPAC1B3.16c ; systematic_id "SPAC1B3.16c" ; colour "2" ; gene "vht1 ||| SPAC1B3.16c" ; Alias "vht1" ; db_xref "SPD:35/35E01" ; GO "GO:0015225; biotin transporter activity
GO:0005887; integral to plasma membrane
GO:0015878; biotin transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=20061218 ||| term=orthologous to S. cerevisiae YGR065C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=complementation, functionally complements S. cerevisiae VHT1; db_xref=PMID:12557275; date=20101012" ; primary_name "vht1" ; product "vitamin H transporter Vth1" ;
chromosome1 GeneDB mRNA 756479 757087 . - . mRNA SPAC4G8.02c ; systematic_id "SPAC4G8.02c" ; colour "7" ; gene "sss1 ||| SPAC4G8.02c" ; Alias "sss1" ; db_xref "SPD:04/04E12" ; GO "GO:0005784; translocon complex
GO:0006616; SRP-dependent cotranslational protein targeting to membrane, translocation
GO:0008565; protein transporter activity
GO:0006620; posttranslational protein targeting to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "sss1" ; product "translocon gamma subunit Sss1 (predicted)" ; reserved_name "sss1" ;
chromosome1 GeneDB mRNA 579435 581417 . - . mRNA SPAC13A11.04c ; systematic_id "SPAC13A11.04c" ; colour "2" ; gene "SPAC13A11.04c ||| ubp8" ; Alias "ubp8" ; db_xref "SPD:34/34H11" ; GO "GO:0005654; nucleoplasm
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0000124; SAGA complex
GO:0004221; ubiquitin thiolesterase activity
GO:0035616; histone H2B conserved C-terminal lysine deubiquitinatio
GO:0006338; chromatin remodeling
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0016573; histone acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-UBP type; date=19700101 ||| term=orthologous to S. cerevisiae YMR223W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human USP22 ortholog; date=20101001" ; primary_name "ubp8" ; product "SAGA complex ubiquitin C-terminal hydrolase Ubp8" ;
chromosome1 GeneDB mRNA 4600263 4600817 . - . mRNA SPAC12B10.15c ; systematic_id "SPAC12B10.15c" ; colour "7" ; gene "SPAC12B10.15c" ; note "S. cerevisiae orthology prediction pers. comm Charly Chahwan" ; db_xref "SPD:41/41B11" ; GO "GO:0004523; ribonuclease H activity
GO:0004523; ribonuclease H activity
GO:0043137; DNA replication, removal of RNA primer
GO:0032299; ribonuclease H2 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR154C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "ribonuclease H2 complex subunit (predicted)" ;
chromosome1 GeneDB mRNA 3104101 3105908 . - . mRNA SPAC589.07c ; systematic_id "SPAC589.07c" ; colour "2" ; gene "SPAC589.07c" ; Alias "atg18" ; db_xref "SPD:50/50H05" ; synonym "atg18a" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=WD repeat protein WIPI family; date=19700101 ||| term=orthologous to S. cerevisiae YFR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0005829; cytosol
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0035091; phosphoinositide binding
GO:0006623; protein targeting to vacuole
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; primary_name "atg18" ; product "WD repeat protein involved in autophagy Atg18a" ;
chromosome1 GeneDB mRNA 77578 77931 . - . mRNA SPAPJ695.01c ; systematic_id "SPAPJ695.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20071122 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPAPJ695.01c" ; product "S. pombe specific UPF0321 family protein 3" ;
chromosome1 GeneDB mRNA 4840677 4843586 . - . mRNA SPAC4F10.07c ; systematic_id "SPAC4F10.07c" ; colour "2" ; db_xref "SPD:38/38E11" ; Alias "atg13" ; synonym "apg13 ||| mug78" ; GO "GO:0006914; autophagy
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032258; CVT pathway
GO:0000747; sexual reproduction
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR185W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; qualifier=predicted; date=20091125 ||| term=target of Tor1; qualifier=phosphorylated_by|predicted; date=20091125" ; primary_name "atg13" ; product "autophagy associated protein kinase regulatory subunit Atg13" ;
chromosome1 GeneDB mRNA 3006138 3007531 . + . mRNA SPAC31G5.11 ; systematic_id "SPAC31G5.11" ; colour "2" ; gene "pac2 ||| SPAC31G5.11" ; Alias "pac2" ; db_xref "SPD:08/08D02" ; GO "GO:0031139; positive regulation of conjugation with cellular fusion
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL007W and YHR177W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "pac2" ; product "cAMP-independent regulatory protein Pac2" ;
chromosome1 GeneDB mRNA 2950048 2952135 . - . mRNA SPAPB24D3.02c ; systematic_id "SPAPB24D3.02c" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; gene "SPAPB24D3.02c" ; product "amino acid permease, unknown 3 (predicted)" ;
chromosome1 GeneDB mRNA 148213 148935 . - . mRNA SPAC5H10.02c ; db_xref "SPD:08/08E11" ; systematic_id "SPAC5H10.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR533C and YPL280W and YOR391C and YMR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0034599; cellular response to oxidative stress" ; gene "SPAC5H10.02c" ; product "ThiJ domain protein" ;
chromosome1 GeneDB mRNA 338315 338883 . + . mRNA SPAC12G12.05c ; systematic_id "SPAC12G12.05c" ; colour "2" ; gene "taf9 ||| SPAC12G12.05c" ; Alias "taf9" ; db_xref "SPD:04/04F10" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YMR236W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "taf9" ; product "SAGA complex/ transcription initiation factor Taf9" ;
chromosome1 GeneDB mRNA 5305699 5306434 . + . mRNA SPAC11E3.12 ; db_xref "SPD:52/52A01" ; systematic_id "SPAC11E3.12" ; controlled_curation "term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC11E3.12" ; product "conserved eukaryotic protein" ; note "this coding sequence was previously annotated to the NADH dehydrogenase of the mitochondrial respiratory chain complex I. This annotation was removed due to lack of the other 40 subunits that are present in that complex in mammals (PMID:1518044). It is suggested that this protein may have an alternative role in fatty acid biosynthesis (PMID:1518044)." ;
chromosome1 GeneDB mRNA 1799061 1800053 . + . mRNA SPAC1002.02 ; systematic_id "SPAC1002.02" ; colour "7" ; gene "SPAC1002.02 ||| mug31" ; Alias "mug31" ; db_xref "SPD:08/08A04" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0005643; nuclear pore" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR018C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mug31" ; product "nucleoporin Pom34 (predicted)" ;
chromosome1 GeneDB mRNA 4788494 4788895 . - . mRNA SPAC22F8.03c ; db_xref "SPD:03/03A11" ; systematic_id "SPAC22F8.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC22F8.03c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1153593 1156443 . + . mRNA SPAC56F8.16 ; systematic_id "SPAC56F8.16" ; colour "2" ; gene "esc1 ||| SPAC56F8.16" ; Alias "esc1" ; db_xref "SPD:19/19H01" ; GO "GO:0031142; induction of conjugation upon nitrogen starvation
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0045893; positive regulation of transcription, DNA-dependent
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "esc1" ; product "transcription factor Esc1 (predicted)" ;
chromosome1 GeneDB mRNA 3207482 3208106 . + . mRNA SPAC1486.08 ; db_xref "SPD:04/04B06" ; systematic_id "SPAC1486.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0008535; cytochrome c oxidase complex assembly
GO:0007005; mitochondrion organization and biogenesis" ; gene "SPAC1486.08" ; product "mitochondrial inner membrane protein involved in cytochrome c oxidase assembly Cox16 (predicted)" ;
chromosome1 GeneDB mRNA 936222 938107 . - . mRNA SPAC1687.18c ; systematic_id "SPAC1687.18c" ; colour "2" ; gene "ssl3 ||| SPAC1687.18c" ; Alias "ssl3" ; db_xref "SPD:36/36G07" ; GO "GO:0032116; cohesin loading complex
GO:0000794; condensed nuclear chromosome
GO:0005515; protein binding
GO:0034087; establishment of mitotic sister chromatid cohesion
GO:0007064; mitotic sister chromatid cohesion
GO:0034184; positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0034613; cellular protein localization
GO:0071921; cohesin localization to chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; db_xref=InterPro:IPR011990; date=20060524 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16682348; date=20060524 ||| term=orthologous to S. cerevisiae YER147C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090105 ||| term=species distribution, conserved in Vertebrates; date=20090105 ||| term=species distribution, conserved in Eukaryotes only; date=20090105" ; primary_name "ssl3" ; product "cohesin loading factor Ssl3" ;
chromosome1 GeneDB mRNA 1975212 1976603 . + . mRNA SPAC9G1.04 ; systematic_id "SPAC9G1.04" ; colour "2" ; db_xref "SPD:20/20C03" ; Alias "oxa101" ; synonym "oxa1 ||| oxa1-1 ||| oxa1sp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER154W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008535; cytochrome c oxidase complex assembly
GO:0005743; mitochondrial inner membrane
GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane" ; primary_name "oxa101" ; product "mitochondrial inner membrane translocase Oxa101" ;
chromosome1 GeneDB mRNA 3169663 3171414 . + . mRNA SPAC3G9.07c ; systematic_id "SPAC3G9.07c" ; colour "2" ; gene "hos2 ||| hda1 ||| SPAC3G9.07c ||| phd1" ; Alias "hos2" ; db_xref "SPD:22/22F12" ; synonym "hda1 ||| phd1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL194C; date=19700101 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16079916; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0034967; Set3 complex
GO:0034739; histone deacetylase activity (H3-K16 specific)
GO:0004407; histone deacetylase activity
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0016575; histone deacetylation
GO:0060303; regulation of nucleosome density
GO:0006357; regulation of transcription from polymerase II promoter
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling
GO:0006338; chromatin remodeling" ; primary_name "hos2" ; product "histone deacetylase (class I) Hos2" ;
chromosome1 GeneDB mRNA 1073534 1073854 . + . mRNA SPAC1A6.11 ; db_xref "SPD:51/51G05" ; systematic_id "SPAC1A6.11" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPAC1A6.11" ; product "dubious" ;
chromosome1 GeneDB mRNA 4425136 4426967 . - . mRNA SPAC16.02c ; systematic_id "SPAC16.02c" ; colour "2" ; gene "srp2 ||| SPAC16.02c" ; Alias "srp2" ; db_xref "SPD:33/33D01" ; GO "GO:0005634; nucleus
GO:0003723; RNA binding
GO:0003729; mRNA binding
GO:0008143; poly(A) binding
GO:0046982; protein heterodimerization activity
GO:0006406; mRNA export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SR family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YDR432W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:12186627; date=20090213 ||| term=human TAF15 ortholog; date=20100203 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "srp2" ; product "mRNA export factor Srp2" ;
chromosome1 GeneDB mRNA 2033768 2035673 . - . mRNA SPAC17H9.19c ; systematic_id "SPAC17H9.19c" ; colour "2" ; gene "cdt2 ||| SPAC17H9.19c ||| sev2" ; Alias "cdt2" ; db_xref "SPD:23/23G01" ; synonym "sev1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12871901; date=19700101 ||| term=phenotype, sensitive to HU; qualifier=deletion; cv=phenotype; db_xref=PMID:12871901; date=20050413 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:12871901; date=20100727 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; db_xref=PMID:8313888; cv=gene_ex; date=20050413 ||| term=misc, degradation is independent of association with Pcu4-DDb1-CSN complex; db_xref=PMID:8313888; date=20050413 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, ubiquitinated; db_xref=PMID:16252005; cv=pt_mod; date=19700101 ||| term=phenotype, sporulation defects; db_xref=PMID:12871901; date=20101022" ; GO "GO:0031464; Cul4A-RING ubiquitin ligase complex
GO:0032403; protein complex binding
GO:0005634; nucleus
GO:0008180; signalosome complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000077; DNA damage checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006261; DNA replication
GO:0006261; DNA replication
GO:0051443; positive regulation of ubiquitin ligase activity
GO:0034613; cellular protein localization
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0006974; response to DNA damage stimulus
GO:0006279; premeiotic DNA synthesis" ; primary_name "cdt2" ; product "WD repeat protein Cdt2" ;
chromosome1 GeneDB mRNA 1403170 1409763 . + . mRNA SPAC20G8.06 ; systematic_id "SPAC20G8.06" ; colour "7" ; gene "not1 ||| SPAC20G8.06" ; Alias "not1" ; db_xref "SPD:34/34C04" ; GO "GO:0030015; CCR4-NOT core complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006354; RNA elongation
GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0006402; mRNA catabolism
GO:0000289; poly(A) tail shortening" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "not1" ; product "CCR4-Not complex subunit Not1 (predicted)" ;
chromosome1 GeneDB mRNA 2553825 2555915 . - . mRNA SPAC4A8.06c ; db_xref "SPD:35/35G12" ; systematic_id "SPAC4A8.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC4A8.06c" ; product "esterase/lipase (predicted)" ;
chromosome1 GeneDB mRNA 1639232 1641213 . - . mRNA SPAC343.01c ; systematic_id "SPAC343.01c" ; colour "7" ; gene "SPAC343.01c ||| erg8" ; Alias "erg8" ; db_xref "SPD:20/20G11" ; GO "GO:0004631; phosphomevalonate kinase activity
GO:0006696; ergosterol biosynthesis
GO:0005829; cytosol" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR220W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "erg8" ; product "phosphomevalonate kinase (predicted)" ; EC_number "2.7.4.2" ; reserved_name "erg8" ;
chromosome1 GeneDB mRNA 4415547 4417066 . + . mRNA SPAC29E6.08 ; systematic_id "SPAC29E6.08" ; colour "2" ; gene "tbp1 ||| tdf1 ||| tbp ||| SPAC29E6.08 ||| SPAC30.12" ; Alias "tbp1" ; db_xref "SPD:43/43G03" ; synonym "tdf1 ||| tbp ||| SPAC30.12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER148W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0005669; transcription factor TFIID complex
GO:0000126; transcription factor TFIIIB complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0003709; RNA polymerase III transcription factor activity
GO:0003701; RNA polymerase I transcription factor activity
GO:0006360; transcription from RNA polymerase I promoter
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0000120; RNA polymerase I transcription factor complex" ; primary_name "tbp1" ; product "TATA-binding protein (TBP)" ;
chromosome1 GeneDB mRNA 1124101 1128995 . + . mRNA SPAC56F8.02 ; db_xref "SPD:30/30H11" ; systematic_id "SPAC56F8.02" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR093C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC56F8.02" ; product "AMP binding enzyme (predicted)" ;
chromosome1 GeneDB mRNA 1295537 1296580 . - . mRNA SPAC1565.04c ; systematic_id "SPAC1565.04c" ; colour "2" ; gene "ste4 ||| SPAC1565.04c" ; Alias "ste4" ; db_xref "SPD:13/13D07" ; GO "GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0019887; protein kinase regulator activity
GO:0006995; cellular response to nitrogen starvation
GO:0000750; pheromone-dependent signal transduction during conjugation with cellular fusion
GO:0019236; response to pheromone
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is Byr2; date=19700101 ||| term=orthologous to S. cerevisiae YCL032W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=phenotype, sterile; db_xref=PMID:3185514; date=20101013 ||| term=name description, STErile; db_xref=PMID:3185514; date=20101013" ; primary_name "ste4" ; product "adaptor protein Ste4" ;
chromosome1 GeneDB mRNA 1761552 1764319 . + . mRNA SPAC17A5.06 ; systematic_id "SPAC17A5.06" ; colour "2" ; gene "ptr8 ||| SPAC17A5.06" ; Alias "ptr8" ; obsolete_name "ercc3sp" ; db_xref "SPD:28/28F10" ; GO "GO:0000112; nucleotide-excision repair factor 3 complex
GO:0005634; nucleus
GO:0005675; transcription factor TFIIH complex
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0016251; general RNA polymerase II transcription factor activity
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0034644; cellular response to UV
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0006283; transcription-coupled nucleotide- excision repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17212653; date=20070115 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=human ERCC3 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YIL143C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ptr8" ; product "transcription factor TFIIH complex ERCC-3 subunit" ;
chromosome1 GeneDB mRNA 4187325 4189859 . + . mRNA SPAC25B8.16 ; db_xref "SPD:27/27H04" ; systematic_id "SPAC25B8.16" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL221C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005655; nucleolar ribonuclease P complex
GO:0005634; nucleus
GO:0000171; ribonuclease MRP activity
GO:0004526; ribonuclease P activity
GO:0006364; rRNA processing
GO:0008033; tRNA processing
GO:0000172; ribonuclease MRP complex
GO:0006379; mRNA cleavage" ; gene "SPAC25B8.16" ; product "RNase P and RNase MRP subunit (predicted)" ;
chromosome1 GeneDB mRNA 5393586 5394307 . + . mRNA SPAC3G6.08 ; systematic_id "SPAC3G6.08" ; colour "7" ; gene "erv1 ||| SPAC3G6.08" ; Alias "erv1" ; db_xref "SPD:05/05F04" ; GO "GO:0016972; thiol oxidase activity
GO:0006879; iron ion homeostasis
GO:0007005; mitochondrion organization and biogenesis
GO:0005758; mitochondrial intermembrane space
GO:0045041; protein import into mitochondrial intermembrane space
GO:0006467; protein thiol-disulphide exchange" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR029W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "erv1" ; product "mitochondrial sulfhydryl oxidase (predicted)" ;
chromosome1 GeneDB mRNA 2336034 2337581 . + . mRNA SPAC6C3.07 ; systematic_id "SPAC6C3.07" ; colour "8" ; gene "SPAC6C3.07 ||| mug68" ; db_xref "SPD:25/25B02" ; Alias "mug68" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug68" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 5334956 5336389 . - . mRNA SPAP8A3.11c ; systematic_id "SPAP8A3.11c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=orthologous to S. cerevisiae YHR168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0043022; ribosome binding
GO:0006412; protein biosynthesis
GO:0005743; mitochondrial inner membrane
GO:0019898; extrinsic to membrane
GO:0031314; extrinsic to mitochondrial inner membrane" ; gene "SPAP8A3.11c" ; product "mitochondrial GTPase Mtg2 (predicted)" ;
chromosome1 GeneDB mRNA 804662 807633 . + . mRNA SPAC16C9.07 ; systematic_id "SPAC16C9.07" ; colour "7" ; gene "ppk5 ||| SPAC16C9.07 ||| SPAC2G11.01 ||| mug189" ; Alias "ppk5" ; db_xref "SPD:29/29B07" ; synonym "SPAC2G11.01 ||| mug189" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=related to S. pombe pom1; date=19700101 ||| term=DYRK subfamily; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation" ; primary_name "ppk5" ; product "serine/threonine protein kinase Ppk5 (predicted)" ;
chromosome1 GeneDB mRNA 3218727 3220373 . - . mRNA SPAC6G10.03c ; db_xref "SPD:44/44B08" ; systematic_id "SPAC6G10.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=abhydrolase family; date=19700101 ||| term=orthologous to S. cerevisiae YGR110W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0004623; phospholipase A2 activity
GO:0032048; cardiolipin metabolic process
GO:0005739; mitochondrion" ; colour "7" ; gene "SPAC6G10.03c" ; product "mitochondrial cardiolipin-specific phopholipase (predicted)" ;
chromosome1 GeneDB mRNA 4860585 4861232 . - . mRNA SPAC4F10.14c ; systematic_id "SPAC4F10.14c" ; colour "2" ; gene "btf3 ||| SPAC4F10.14c ||| egd1 ||| nac2 ||| btt1" ; Alias "btf3" ; db_xref "SPD:31/31F10" ; synonym "egd1 ||| btt1 ||| nac2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR252W and YPL037C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17211518; date=20070807 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005854; nascent polypeptide-associated complex
GO:0042788; polysomal ribosome
GO:0051082; unfolded protein binding
GO:0051083; cotranslational protein folding
GO:0006613; cotranslational protein targeting to membrane" ; primary_name "btf3" ; product "nascent polypeptide-associated complex beta subunit" ;
chromosome1 GeneDB mRNA 4129253 4131314 . + . mRNA SPAC26H5.06 ; systematic_id "SPAC26H5.06" ; colour "2" ; gene "pot1 ||| SPAC26H5.06" ; Alias "pot1" ; db_xref "SPD:45/45H02" ; GO "GO:0070187; telosome
GO:0005515; protein binding
GO:0043047; single-stranded telomeric DNA binding
GO:0000070; mitotic sister chromatid segregation
GO:0016233; telomere capping
GO:0007004; telomere maintenance via telomerase" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=OB fold; date=19700101 ||| term=orthologous to S. cerevisiae YDL220C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11349150; date=20100712" ; primary_name "pot1" ; product "telomere end-binding protein Pot1" ;
chromosome1 GeneDB mRNA 2702997 2703812 . - . mRNA SPAC644.17c ; systematic_id "SPAC644.17c" ; colour "7" ; gene "SPAC644.17c ||| mrpl9" ; Alias "mrpl9" ; db_xref "SPD:09/09G03" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0000048; peptidyltransferase activity
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR220C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl9" ; product "mitochondrial ribosomal protein subunit L9 (predicted)" ;
chromosome1 GeneDB mRNA 1667775 1669592 . + . mRNA SPAC343.12 ; systematic_id "SPAC343.12" ; colour "2" ; gene "rds1 ||| SPAC343.12" ; Alias "rds1" ; db_xref "SPD:19/19C06" ; GO "GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by glucose; db_xref=PMID:7565608; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by ammoniu; db_xref=PMID:7565608; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by phosphate; db_xref=PMID:7565608; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by carbon dioxide; db_xref=PMID:7565608; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by temperature; db_xref=PMID:7565608; cv=gene_ex; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to N. crassa b19a17.210; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; primary_name "rds1" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 3736955 3739106 . + . mRNA SPAP7G5.03 ; Alias "prm1" ; systematic_id "SPAP7G5.03" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL279W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0032220; plasma membrane fusion during cytogamy
GO:0043332; mating projection tip
GO:0005887; integral to plasma membrane" ; gene "prm1 ||| SPAP7G5.03" ; primary_name "prm1" ; product "conjugation protein Prm1 (predicted)" ;
chromosome1 GeneDB mRNA 5133217 5135342 . + . mRNA SPAC29A4.08c ; systematic_id "SPAC29A4.08c" ; colour "2" ; gene "prp19 ||| cwf8 ||| SPAC29A4.08c" ; Alias "prp19" ; db_xref "SPD:27/27D01" ; synonym "cwf8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=U-box domain; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; date=19700101 ||| term=orthologous to S. cerevisiae YLL036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005681; spliceosome complex
GO:0000151; ubiquitin ligase complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0016567; protein ubiquitination
GO:0006511; ubiquitin-dependent protein catabolism" ; primary_name "prp19" ; product "ubiquitin-protein ligase E4" ;
chromosome1 GeneDB mRNA 3928721 3929931 . - . mRNA SPAC2F3.05c ; db_xref "SPD:10/10F12" ; systematic_id "SPAC2F3.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "7" ; GO "GO:0042843; D-xylose catabolism
GO:0019568; arabinose catabolism
GO:0032866; xylose reductase activity
GO:0032867; arabinose reductase activity" ; gene "SPAC2F3.05c" ; product "xylose and arabinose reductase (predicted)" ;
chromosome1 GeneDB mRNA 588543 590600 . + . mRNA SPAC3H8.02 ; db_xref "SPD:20/20F07" ; systematic_id "SPAC3H8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR380W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0008526; phosphatidylinositol transporter activity
GO:0031505; cell wall organization and biogenesis
GO:0015914; phospholipid transport" ; gene "SPAC3H8.02" ; product "sec14 cytosolic factor family phosphatidylinositol transporter (predicted)" ;
chromosome1 GeneDB mRNA 475433 476113 . - . mRNA SPAC24H6.07 ; systematic_id "SPAC24H6.07" ; colour "2" ; gene "rps901 ||| rps9-1 ||| SPAC24H6.07 ||| rps9a" ; Alias "rps901" ; db_xref "SPD:07/07A04" ; synonym "rps9-1 ||| rps9a" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL081W and YBR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps901" ; product "40S ribosomal protein S9" ;
chromosome1 GeneDB mRNA 23589 23978 . - . mRNA SPAC212.03 ; db_xref "SPD:41/41B06" ; systematic_id "SPAC212.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPAC212.03" ; product "hypothetical protein" ;
chromosome1 GeneDB mRNA 679812 681890 . + . mRNA SPAC22F3.12c ; systematic_id "SPAC22F3.12c" ; colour "2" ; gene "rgs1 ||| SPAC22F3.12c" ; Alias "rgs1" ; db_xref "SPD:23/23C06" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005096; GTPase activator activity
GO:0010969; regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion
GO:0090029; negative regulation of pheromone signalling during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR452C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=target of Ste11; db_xref=PMID:11554925; date=20100630" ; primary_name "rgs1" ; product "regulator of G-protein signaling Rgs1" ;
chromosome1 GeneDB mRNA 32230 32670 . + . mRNA SPAC977.02 ; db_xref "SPD:51/51B03" ; systematic_id "SPAC977.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101" ; colour "12" ; gene "SPAC977.02" ; product "S. pombe specific 5Tm protein family" ;
chromosome1 GeneDB mRNA 5110337 5111932 . - . mRNA SPAC29A4.18 ; systematic_id "SPAC29A4.18" ; colour "2" ; gene "prw1 ||| SPAC29A4.18" ; Alias "prw1" ; db_xref "SPD:23/23C03" ; GO "GO:0032221; Clr6 histone deacetylase complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0006338; chromatin remodeling
GO:0006342; chromatin silencing
GO:0030261; chromosome condensation
GO:0016575; histone deacetylation
GO:0033698; Clr6 histone deacetylase complex I/I'
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:12773392; date=20100727 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YEL056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; cv=misc; db_xref=PMID:19040720; date=20081230" ; primary_name "prw1" ; product "Clr6 histone deacetylase complex subunit Prw1" ;
chromosome1 GeneDB mRNA 5002542 5004467 . - . mRNA SPAC890.02c ; systematic_id "SPAC890.02c" ; colour "2" ; db_xref "SPD:21/21H06" ; Alias "alp7" ; synonym "mia1" ; GO "GO:0070850; TACC/TOG complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005737; cytoplasm
GO:0015630; microtubule cytoskeleton
GO:0015630; microtubule cytoskeleton
GO:0005634; nucleus
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0030953; astral microtubule organization and biogenesis
GO:0034613; cellular protein localization
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0000132; establishment of mitotic spindle orientation
GO:0000226; microtubule cytoskeleton organization
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12360293; date=19700101 ||| term=phenotype, spindle defects, short spindles; qualifier=high_penetrance|deletion|during_mitosis; cv=phenotype; db_xref=PMID:12360293; date=19700101 ||| term=phenotype, chromosome segregation defects; qualifier=during_mitosis; db_xref=PMID:19696784; date=20100909 ||| term=phenotype, microtubule organization defects; allele=Mia1p-MutNES4; cv=phenotype; db_xref=PMID:19206211; date=20090817 ||| term=phenotype, spindle defects; qualifier=during_mitosis; allele=Mia1p-MutNES4; cv=phenotype; db_xref=PMID:19206211; date=20090817 ||| term=phenotype, sensitive to high temperature; cv=phenotype; db_xref=PMID:19696784; date=20091127 ||| term=phenotype, growth defect, slow growth at high temperatures; cv=phenotype; db_xref=PMID:19696784; date=20091127 ||| term=phenotype, chromosome segregation defects; cv=phenotype; db_xref=PMID:19696784; date=20091127 ||| term=human TACC1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:19206211; cv=localization; date=20090817 ||| term=localization, undergoes nucleocytoplasmic shuttling; qualifier=during_mitosis; db_xref=PMID:19696784; cv=localization; date=20090817 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=protein sequence feature, NES; evidence=IMP; cv=sequence_feature; db_xref=PMID:19696784; date=20091127 ||| term=protein sequence feature, NLS; evidence=IMP; cv=sequence_feature; db_xref=PMID:19696784; date=20091127" ; primary_name "alp7" ; product "centrosomal transforming acidic coiled-coil (TACC) protein ortholog Alp7" ;
chromosome1 GeneDB mRNA 962345 964712 . - . mRNA SPAC222.10c ; systematic_id "SPAC222.10c" ; colour "2" ; gene "byr4 ||| SPAC222.10c" ; Alias "byr4" ; db_xref "SPD:37/37B08" ; GO "GO:0010974; negative regulation of barrier septum formation
GO:0071776; negative regulation of cell cycle cytokinesis
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0046578; regulation of Ras protein signal transduction
GO:0031030; negative regulation of septation initiation signaling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is Spg1; db_xref=PMID:9742395; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "byr4" ; product "two-component GAP Byr4" ;
chromosome1 GeneDB mRNA 5397600 5398153 . - . mRNA SPAC3G6.10c ; systematic_id "SPAC3G6.10c" ; colour "7" ; gene "SPAC3G6.10c ||| vps51" ; Alias "vps51" ; db_xref "SPD:42/42B09" ; GO "GO:0000938; GARP complex
GO:0006623; protein targeting to vacuole
GO:0042147; retrograde transport, endosome to Golgi" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR020W; date=20070814 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human c11orf2 ortholog; date=20100125" ; primary_name "vps51" ; product "GARP complex subunit Vps51 (predicted)" ;
chromosome1 GeneDB mRNA 3465067 3466335 . - . mRNA SPAC3A11.04 ; db_xref "SPD:13/13F12" ; systematic_id "SPAC3A11.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Berardinelli-Seip congenital lipodystrophy type 2, Silver spastic paraplegia syndrome, distal hereditary motor neuropathy type V; date=20061212 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=20061212 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20061212 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC3A11.04" ; product "siepin homolog" ;
chromosome1 GeneDB mRNA 5140369 5142190 . + . mRNA SPAC29A4.04c ; db_xref "SPD:21/21H07" ; systematic_id "SPAC29A4.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PUA domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0004730; pseudouridylate synthase activity
GO:0006364; 35S primary transcript processing
GO:0000154; rRNA modification" ; gene "SPAC29A4.04c" ; product "pseudouridylate synthase (predicted)" ;
chromosome1 GeneDB mRNA 5167041 5170475 . + . mRNA SPAC26F1.08c ; db_xref "SPD:29/29G09" ; systematic_id "SPAC26F1.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=orthologous to S. cerevisiae YDL231C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20090105 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0016021; integral to membrane" ; gene "SPAC26F1.08c" ; product "conserved protein" ;
chromosome1 GeneDB mRNA 1651012 1652981 . + . mRNA SPAC343.07 ; systematic_id "SPAC343.07" ; colour "2" ; gene "mug28 ||| SPAC343.07" ; db_xref "SPD:27/27B10" ; Alias "mug28" ; GO "GO:0003723; RNA binding
GO:0030437; sporulation (sensu Fungi)
GO:0005737; cytoplasm
GO:0005628; prospore membrane
GO:0031321; ascospore-type prospore formation
GO:0005619; ascospore wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe crp79; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:20410137; date=20100426 ||| term=phenotype, sporulation defects; cv=phenotype; db_xref=PMID:20410137; date=20100426 ||| term=phenotype, cell morphology, snowman during sporulation; cv=phenotype; db_xref=PMID:20410137; date=20100426" ; primary_name "mug28" ; product "RNA-binding protein Mug28" ;
chromosome1 GeneDB mRNA 749495 751588 . + . mRNA SPAC22G7.08 ; systematic_id "SPAC22G7.08" ; colour "7" ; gene "ppk8 ||| SPAC22G7.08" ; Alias "ppk8" ; db_xref "SPD:34/34G08" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNL183C and YOR267C and YDL025C and YDL214C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110" ; primary_name "ppk8" ; product "serine/threonine protein kinase Ppk8 (predicted)" ;
chromosome1 GeneDB mRNA 4151251 4152953 . - . mRNA SPAC26H5.13c ; systematic_id "SPAC26H5.13c" ; colour "7" ; db_xref "SPD:10/10B01" ; Alias "kei1" ; GO "GO:0030173; integral to Golgi membrane
GO:0070916; inositolphoshorylceramide synthase complex
GO:0006674; inositol phosphorylceramide metabolic process
GO:0070917; inositolphoshorylceramide synthase regulator activity
GO:0030148; sphingolipid biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR367W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, proteolytic cleavage; qualifier=predicted; cv=pt_mod; evidence=ISS; date=20090910" ; primary_name "kei1" ; product "inositol phoshorylceramide synthase regulatory subunit Kei1 (predicted)" ;
chromosome1 GeneDB mRNA 2324481 2325288 . - . mRNA SPAC6C3.02c ; db_xref "SPD:05/05B05" ; systematic_id "SPAC6C3.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CHCH domain; date=19700101 ||| term=orthologous to S. cerevisiae YMR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005758; mitochondrial intermembrane space" ; gene "SPAC6C3.02c" ; product "mitochondrial CHCH domain protein (predicted)" ;
chromosome1 GeneDB mRNA 2785536 2786148 . - . mRNA SPAC1805.07c ; systematic_id "SPAC1805.07c" ; colour "2" ; gene "dad2 ||| hos2 ||| SPAC1805.07c" ; Alias "dad2" ; db_xref "SPD:42/42D12" ; synonym "hos2" ; GO "GO:0007052; mitotic spindle organization and biogenesis
GO:0042729; DASH complex
GO:0031134; sister chromatid biorientation
GO:0005816; spindle pole body
GO:0000778; condensed nuclear chromosome kinetochore
GO:0071470; cellular response to osmotic stress
GO:0000779; condensed chromosome, pericentric region" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16079914; date=19700101 ||| term=orthologous to S. cerevisiae YKR083C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, High Osmolarity Sensitive; cv=name_description; date=20090812 ||| term=phenotype, sensitive to high osmolarity; cv=phenotype; date=20090812" ; primary_name "dad2" ; product "DASH complex subunit Dad2" ;
chromosome1 GeneDB mRNA 2686102 2687821 . + . mRNA SPAC644.07 ; db_xref "SPD:20/20H07" ; systematic_id "SPAC644.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=disease associated, GRACILE syndrome; date=19700101 ||| term=orthologous to S. cerevisiae YDR375C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0042623; ATPase activity, coupled
GO:0016226; iron-sulfur cluster assembly
GO:0043623; cellular protein complex assembly" ; gene "SPAC644.07" ; product "mitochondrial Rieske ISP assembly ATPase (predicted)" ;
chromosome1 GeneDB mRNA 617825 620996 . + . mRNA SPAC1F3.03 ; db_xref "SPD:47/47H08" ; systematic_id "SPAC1F3.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR032W and YBL106C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006887; exocytosis
GO:0006893; Golgi to plasma membrane transport
GO:0005886; plasma membrane
GO:0005829; cytosol
GO:0030010; establishment of cell polarity (sensu Fungi)
GO:0000149; SNARE binding
GO:0007264; small GTPase mediated signal transduction
GO:0017137; Rab GTPase binding" ; gene "SPAC1F3.03" ; product "Lgl family protein (predicted)" ;
chromosome1 GeneDB mRNA 983852 986987 . - . mRNA SPAC821.04c ; systematic_id "SPAC821.04c" ; colour "2" ; gene "cid13 ||| SPAC821.04c" ; Alias "cid13" ; db_xref "SPD:45/45F11" ; GO "GO:0005737; cytoplasm
GO:0004652; polynucleotide adenylyltransferase activity
GO:0006378; mRNA polyadenylation
GO:0033314; mitotic cell cycle DNA replication checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is suc22; db_xref=PMID:12062100; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cid13" ; product "poly(A) polymerase Cid13" ; EC_number "2.7.7.19" ;
chromosome1 GeneDB mRNA 2623940 2624038 . - . mRNA SPAC7D4.15c ; systematic_id "SPAC7D4.15c" ; colour "7" ; gene "SPAC7D4.15c ||| ost4" ; Alias "ost4" ; db_xref "SPD:51/51F05" ; GO "GO:0006487; protein amino acid N-linked glycosylation
GO:0004579; dolichyl-diphosphooligosaccharide- protei nglycotransferase activity
GO:0008250; oligosaccharyl transferase complex
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL232W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ost4" ; product "oligosaccharyltransferase subunit Ost4 (predicted)" ;
chromosome1 GeneDB mRNA 1965106 1966426 . + . mRNA SPAC3H1.13 ; systematic_id "SPAC3H1.13" ; colour "7" ; gene "ppk13 ||| SPAC3H1.13" ; Alias "ppk13" ; db_xref "SPD:18/18D08" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YPL236C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk13" ; product "serine/threonine protein kinase Ppk13 (predicted)" ;
chromosome1 GeneDB mRNA 4352514 4353577 . + . mRNA SPAC23D3.08 ; systematic_id "SPAC23D3.08" ; colour "2" ; gene "usp108 ||| SPAC23D3.08" ; Alias "usp108" ; db_xref "SPD:19/19H07" ; GO "GO:0005685; snRNP U1
GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17264129; date=20070201 ||| term=KH domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; date=20070502" ; primary_name "usp108" ; product "U1 snRNP-associated protein Usp108" ;
chromosome1 GeneDB mRNA 2462726 2465057 . - . mRNA SPAC19A8.12 ; systematic_id "SPAC19A8.12" ; colour "2" ; gene "dcp2 ||| SPAC19A8.12" ; Alias "dcp2" ; db_xref "SPD:46/46G04" ; GO "GO:0005737; cytoplasm
GO:0000932; cytoplasmic mRNA processing body
GO:0005845; mRNA cap complex
GO:0005845; mRNA cap complex
GO:0005634; nucleus
GO:0000340; RNA 7-methylguanosine cap binding
GO:0050072; m7G(5')pppN diphosphatase activity
GO:0050072; m7G(5')pppN diphosphatase activity
GO:0000287; magnesium ion binding
GO:0005515; protein binding
GO:0000290; deadenylation-dependent decapping
GO:0031087; deadenylation-independent decapping
GO:0000184; mRNA catabolism, nonsense-mediated decay" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL118C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dcp2" ; product "mRNA decapping complex catalytic subunit Dcp2" ; EC_number "3.6.1.30" ;
chromosome1 GeneDB mRNA 4717714 4718408 . - . mRNA SPAC1834.10c ; db_xref "SPD:06/06F02" ; systematic_id "SPAC1834.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1834.10c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4067208 4068258 . + . mRNA SPAC19G12.11 ; systematic_id "SPAC19G12.11" ; colour "7" ; gene "SPAC19G12.11 ||| coq9" ; Alias "coq9" ; db_xref "SPD:43/43B03" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006744; ubiquinone biosynthesis
GO:0009060; aerobic respiration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR201C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, coenzyme Q deficiency; date=20090423" ; primary_name "coq9" ; product "ubiquinone biosynthesis protein Coq9 (predicted)" ;
chromosome1 GeneDB mRNA 5043386 5044723 . - . mRNA SPAC22E12.13c ; systematic_id "SPAC22E12.13c" ; colour "2" ; gene "rpl2403 ||| rpl24-3 ||| SPAC22E12.13c" ; Alias "rpl2403" ; db_xref "SPD:11/11H05" ; synonym "rpl24-3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL031C and YGR148C and YLR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl2403" ; product "60S ribosomal protein L24-3 (L30)" ;
chromosome1 GeneDB mRNA 4392813 4393963 . - . mRNA SPAC30.02c ; db_xref "SPD:14/14D09" ; systematic_id "SPAC30.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0003682; chromatin binding
GO:0006400; tRNA modification" ; gene "SPAC30.02c" ; product "elongator complex associated protein Kti2 (predicted)" ;
chromosome1 GeneDB mRNA 5045824 5049013 . - . mRNA SPAC22E12.14c ; systematic_id "SPAC22E12.14c" ; colour "2" ; db_xref "SPD:26/26H06" ; Alias "sck2" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0001320; age-dependent response to reactive oxygen species involved in chronological cell ageing
GO:0019933; cAMP-mediated signaling
GO:0006468; protein amino acid phosphorylation
GO:0031137; regulation of conjugation with cellular fusion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR205W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9560431; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20090820 ||| term=human AKT1 and AKT2 ortholog; date=20090820 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100414" ; primary_name "sck2" ; product "serine/threonine protein kinase Sck2" ;
chromosome1 GeneDB mRNA 3048060 3051451 . - . mRNA SPAC24C9.06c ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00630; ||| KEGG:MAP00720; ||| SPD:38/38C07" ; systematic_id "SPAC24C9.06c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR304C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006101; citrate metabolism
GO:0006536; glutamate metabolism
GO:0019541; propionate metabolism
GO:0006099; tricarboxylic acid cycle
GO:0003994; aconitate hydratase activity
GO:0005829; cytosol
GO:0005759; mitochondrial matrix" ; gene "SPAC24C9.06c" ; product "aconitate hydratase (predicted)" ; EC_number "4.2.1.3" ;
chromosome1 GeneDB mRNA 637023 639330 . - . mRNA SPAC1F3.10c ; systematic_id "SPAC1F3.10c" ; colour "7" ; gene "SPAC1F3.10c ||| oct1" ; Alias "oct1" ; db_xref "SPD:28/28C03" ; GO "GO:0005759; mitochondrial matrix
GO:0004222; metalloendopeptidase activity
GO:0006879; iron ion homeostasis
GO:0006627; mitochondrial protein processing
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL134C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "oct1" ; product "mitochondrial intermediate peptidase Oct1 (predicted)" ; EC_number "3.4.24.59" ;
chromosome1 GeneDB mRNA 1492325 1493824 . - . mRNA SPAC5D6.12 ; db_xref "SPD:13/13C05" ; systematic_id "SPAC5D6.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL044C; date=20090410 ||| term=species distribution, conserved in Fungi; date=20090410 ||| term=species distribution, conserved in Fungi only; date=20090410" ; GO "GO:0032543; mitochondrial translation
GO:0005739; mitochondrion" ; colour "7" ; gene "SPAC5D6.12" ; product "mitochondrial translation protein (predicted)" ;
chromosome1 GeneDB mRNA 4355627 4358162 . - . mRNA SPAC23D3.10c ; systematic_id "SPAC23D3.10c" ; colour "2" ; gene "eng2 ||| SPAC23D3.10c" ; Alias "eng2" ; db_xref "SPD:46/46E09" ; GO "GO:0072317; beta-glucan catabolic process involved in ascospore release from ascus
GO:0072324; ascus epiplasm
GO:0042973; glucan endo-1,3-beta-D-glucosidase activity
GO:0016998; cell wall catabolism
GO:0031505; fungal-type cell wall organization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR067C and YLR144C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=gene expression, expressed during meiosis; date=20101111" ; primary_name "eng2" ; product "endo-1,3-beta-glucanase Eng2" ; EC_number "3.2.1.39" ;
chromosome1 GeneDB mRNA 5088008 5089492 . + . mRNA SPAC1006.08 ; systematic_id "SPAC1006.08" ; colour "2" ; db_xref "SPD:32/32F11" ; Alias "etd1" ; GO "GO:0051285; cell cortex of cell tip
GO:0031097; medial cortex
GO:0031031; positive regulation of septation initiation signaling
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15933715; date=19700101 ||| term=phenotype, sensitive to cold; qualifier=deletion; db_xref=PMID:19736319; date=20101122 ||| term=phenotype, viable at high temperature; qualifier=deletion; db_xref=PMID:19736319; date=20101122 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:15933715; allele=edt1-1; cv=phenotype; date=20100630 ||| term=phenotype, multinucleate; db_xref=PMID:17307401; date=20100705 ||| term=phenotype, cell morphology, swollen cells; db_xref=PMID:17307401; date=20100705 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=species distribution, no apparent orthologs; date=19700101" ; primary_name "etd1" ; product "ethanol-hypersensitive mutant protein Etd1" ;
chromosome1 GeneDB mRNA 1279573 1280325 . + . mRNA SPAPB17E12.08 ; systematic_id "SPAPB17E12.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL080C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; cv=warning; date=20061212" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006487; protein amino acid N-linked glycosylation" ; product "N-glycosylation protein (predicted)" ;
chromosome1 GeneDB mRNA 2532904 2533214 . - . mRNA SPAC25H1.10c ; systematic_id "SPAC25H1.10c" ; colour "7" ; gene "atp19 ||| SPAC25H1.10c" ; Alias "atp19" ; db_xref "PMID:18488015" ; GO "GO:0000276; mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0046933; hydrogen ion transporting ATP synthase activity, rotational mechanism
GO:0015986; ATP synthesis coupled proton transport" ; controlled_curation "term=orthologous to S. cerevisiae YOL077W-A; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; primary_name "atp19" ; product "F0-ATPase subunit K (predicted)" ;
chromosome1 GeneDB mRNA 1892554 1893694 . + . mRNA SPAPB1A10.15 ; Alias "arv1" ; systematic_id "SPAPB1A10.15" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR242C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006696; ergosterol metabolic process
GO:0005794; Golgi apparatus
GO:0005783; endoplasmic reticulum
GO:0016021; integral to membrane
GO:0006665; sphingolipid metabolism
GO:0032366; intracellular sterol transport
GO:0030176; integral to endoplasmic reticulum membrane" ; gene "SPAPB1A10.15 ||| arv1" ; primary_name "arv1" ; product "Arv1-like family protein Arv1 (predicted)" ; reserved_name "arv1" ;
chromosome1 GeneDB mRNA 4597466 4599622 . - . mRNA SPAC12B10.14c ; systematic_id "SPAC12B10.14c" ; colour "2" ; gene "ppk2 ||| SPAC12B10.14c" ; Alias "ppk2" ; db_xref "EMBL:BK005597 ||| SPD:49/49D04" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YHL007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk2" ; product "serine/threonine protein kinase Ppk2 (predicted)" ;
chromosome1 GeneDB mRNA 4467887 4469061 . - . mRNA SPAC9E9.13 ; systematic_id "SPAC9E9.13" ; colour "2" ; gene "wos2 ||| SPAC9E9.13" ; db_xref "SPD:09/09D02" ; Alias "wos2" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:0007346; regulation of progression through mitotic cell cycle
GO:0032212; positive regulation of telomere maintence via telomerase
GO:0006457; protein folding
GO:0051087; chaperone binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL117W; date=19700101 ||| term=gene expression, alternative transcripts, alternative polyadenylation; db_xref=PMID:12207226; cv=gene_ex; date=19700101 ||| term=CS domain; date=20071105 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "wos2" ; product "p23 homolog, predicted co-chaperone Wos2" ;
chromosome1 GeneDB mRNA 4536975 4540298 . - . mRNA SPAC27D7.14c ; systematic_id "SPAC27D7.14c" ; colour "2" ; gene "tpr1 ||| SPAC27D7.14c ||| SPAC637.02c" ; Alias "tpr1" ; db_xref "SPD:39/39B05" ; synonym "SPAC637.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOL145C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0016593; Cdc73/Paf1 complex
GO:0006813; potassium ion transport" ; primary_name "tpr1" ; product "RNA polymerase II associated Paf1 complex subunit Tpr1" ;
chromosome1 GeneDB mRNA 4255692 4257508 . - . mRNA SPAC21E11.05c ; systematic_id "SPAC21E11.05c" ; colour "2" ; gene "cyp8 ||| SPAC21E11.05c" ; note "seq change GAGT[G]GCA" ; Alias "cyp8" ; db_xref "SPD:35/35D06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, coiled-coil; date=20091118 ||| term=warning, sequence updated; date=20060501 ||| term=warning, gene structure updated; date=20062205" ; primary_name "cyp8" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp8" ; EC_number "5.2.1.8" ;
chromosome1 GeneDB mRNA 4384450 4386371 . + . mRNA SPAC1527.03 ; db_xref "SPD:21/21H12" ; systematic_id "SPAC1527.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL037C and YDR515W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0005844; polysome
GO:0006412; translation
GO:0005737; cytoplasm" ; gene "SPAC1527.03" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB mRNA 4092121 4093336 . + . mRNA SPAC23A1.07 ; db_xref "SPD:09/09C06" ; systematic_id "SPAC23A1.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAC23A1.07" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB mRNA 3870660 3871508 . - . mRNA SPAC1071.09c ; db_xref "SPD:11/11A12" ; systematic_id "SPAC1071.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding" ; gene "SPAC1071.09c" ; product "DNAJ domain protein, DNAJC9 family (predicted)" ;
chromosome1 GeneDB mRNA 1230640 1232017 . - . mRNA SPAC10F6.13c ; db_xref "SPD:19/19E10" ; systematic_id "SPAC10F6.13c" ; colour "7" ; GO "GO:0006533; aspartate catabolism
GO:0006532; aspartate biosynthesis
GO:0004069; aspartate transaminase activity
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; gene "SPAC10F6.13c" ; product "aspartate aminotransferase (predicted)" ; EC_number "2.6.1.1" ;
chromosome1 GeneDB mRNA 3650640 3653993 . - . mRNA SPAC8C9.06c ; systematic_id "SPAC8C9.06c" ; colour "7" ; gene "SPAC8C9.06c" ; note "this homology was assigned from recipriocal blast hits" ; db_xref "SPD:29/29D10" ; GO "GO:0005743; mitochondrial inner membrane
GO:0045182; translation regulator activity
GO:0016070; RNA metabolism
GO:0006417; regulation of translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PPR domains; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR067C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618" ; product "mitochondrial translation regulator (predicted)" ;
chromosome1 GeneDB mRNA 500805 501485 . - . mRNA SPAC227.19c ; systematic_id "SPAC227.19c" ; colour "10" ; gene "SPAC227.19c" ; note "some fungal orthologs seem to be longer, but this small C-terminal region is conserved" ; db_xref "PMID:18488015" ; obsolete_name "SPNCRNA.85" ; controlled_curation "term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080102" ; product "conserved protein" ;
chromosome1 GeneDB mRNA 3815698 3817069 . + . mRNA SPAC1F12.07 ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00750; ||| SPD:18/18E05" ; systematic_id "SPAC1F12.07" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR184W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004648; phosphoserine transaminase activity
GO:0005737; cytoplasm
GO:0006564; L-serine biosynthetic process" ; gene "SPAC1F12.07" ; product "phosphoserine aminotransferase (predicted)" ; EC_number "2.6.1.52" ;
chromosome1 GeneDB mRNA 3410951 3411835 . + . mRNA SPAC3H5.12c ; systematic_id "SPAC3H5.12c" ; colour "7" ; gene "rpl501 ||| rpl5-1 ||| rpl5 ||| SPAC3H5.12c" ; Alias "rpl501" ; synonym "rpl5-1 ||| rpl5" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL131W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl501" ; product "60S ribosomal protein L5 (predicted)" ;
chromosome1 GeneDB mRNA 2217115 2218605 . - . mRNA SPAC18G6.04c ; systematic_id "SPAC18G6.04c" ; colour "7" ; gene "shm2 ||| SPAC18G6.04c" ; note "possibly spliced at 5' end (9288..10667, 10814..10897)" ; Alias "shm2" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00310; ||| KEGG:MAP00460; ||| KEGG:MAP00670; ||| KEGG:MAP00680; ||| SPD:21/21G12" ; GO "GO:0005739; mitochondrion
GO:0004372; glycine hydroxymethyltransferase activity
GO:0009070; serine family amino acid biosynthetic process
GO:0006544; glycine metabolism
GO:0006730; one-carbon compound metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR263W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "shm2" ; product "serine hydroxymethyltransferase Shm2 (predicted)" ; EC_number "2.1.2.1" ;
chromosome1 GeneDB mRNA 5329186 5329906 . + . mRNA SPAP8A3.08 ; Alias "cdc4" ; systematic_id "SPAP8A3.08" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11087750; date=19700101 ||| term=phenotype, cell morphology, elongated dumbbell; qualifier=deletion; db_xref=PMID:958201; date=20100802 ||| term=EF hand; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15195092; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YGL106W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0005515; protein binding
GO:0016460; myosin II complex
GO:0005509; calcium ion binding" ; gene "cdc4 ||| SPAP8A3.08" ; primary_name "cdc4" ; product "myosin II light chain" ;
chromosome1 GeneDB mRNA 4704547 4705921 . - . mRNA SPAC1834.06c ; systematic_id "SPAC1834.06c" ; colour "2" ; gene "pmo25 ||| SPAC1834.06c" ; Alias "pmo25" ; db_xref "SPD:17/17G05" ; GO "GO:0032153; cell division site
GO:0005826; contractile ring
GO:0005737; cytoplasm
GO:0031097; medial ring
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0051666; actin cortical patch localization
GO:0030037; actin filament reorganization during cell cycle
GO:0000078; cell morphogenesis checkpoint
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0010590; regulation of cell separation during cytokinesis
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO: SF 3077846; regulation of establishment or maintenance of cell polarity resulting in resulting in cell shape
GO:0045859; regulation of protein kinase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16096637; date=19700101 ||| term=orthologous to S. cerevisiae YKL189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CAB9 and CAB39-L ortholog; date=20101009" ; primary_name "pmo25" ; product "mo25 family protein Pmo25" ;
chromosome1 GeneDB mRNA 2709722 2712673 . + . mRNA SPAPB2B4.03 ; systematic_id "SPAPB2B4.03" ; colour "2" ; gene "cig2 ||| cyc17 ||| SPAPB2B4.03" ; Alias "cig2" ; synonym "cyc17" ; GO "GO:0007346; regulation of progression through mitotic cell cycle
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031137; regulation of conjugation with cellular fusion
GO:0007089; traversing start control point of mitotic cell cycle
GO:2000045; regulation of G1/S transition of mitotic cell cycle
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=B-type cyclin; db_xref=PMID:8455610; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; cv=gene_ex; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=protein sequence feature, destruction box; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR108W and YPR119W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target of Pop1; db_xref=PMID:14970237; date=20100901 ||| term=target of Pop2; db_xref=PMID:14970237; date=20100901" ; primary_name "cig2" ; product "G1/S-specific B-type cyclin Cig2" ;
chromosome1 GeneDB mRNA 2071862 2073566 . - . mRNA SPAC3C7.05c ; systematic_id "SPAC3C7.05c" ; colour "7" ; gene "SPAC3C7.05c ||| mug191" ; Alias "mug191" ; db_xref "SPD:20/20E10" ; GO "GO:0031362; anchored to external side of plasma membrane
GO:0008496; mannan endo-1,6-alpha-mannosidase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0051692; cellular oligosaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=20080222 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; primary_name "mug191" ; product "alpha-1,6- mannanase (predicted)" ;
chromosome1 GeneDB mRNA 4516070 4518616 . + . mRNA SPAC27D7.04 ; systematic_id "SPAC27D7.04" ; colour "2" ; db_xref "SPD:01/01D05" ; Alias "omt2" ; GO "GO:0005619; spore wall (sensu Fungi)
GO:0008124; 4-alpha-hydroxytetrahydrobiopterin dehydratase activity
GO:0030476; spore wall assembly (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "omt2" ; product "4-alpha-hydroxytetrahydrobiopterin dehydratase (predicted)" ; EC_number "4.2.1.96" ;
chromosome1 GeneDB mRNA 3660430 3660717 . + . mRNA SPAC8C9.19 ; db_xref "SPD:52/52E07" ; systematic_id "SPAC8C9.19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL127C-B; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC8C9.19" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 3659111 3659934 . + . mRNA SPAC8C9.11 ; db_xref "SPD:01/01G02" ; systematic_id "SPAC8C9.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL220W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human bola2 ortholog; date=20100718" ; colour "10" ; gene "SPAC8C9.11" ; product "BolA domain protein" ;
chromosome1 GeneDB mRNA 4742869 4744167 . + . mRNA SPAC458.06 ; systematic_id "SPAC458.06" ; colour "2" ; gene "SPAC458.06" ; db_xref "SPD:22/22E09" ; synonym "atg18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR223C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0035091; phosphoinositide binding
GO:0005737; cytoplasm
GO:0000324; vacuole (sensu Fungi)
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; product "WD repeat protein involved in autophagy Atg18c" ;
chromosome1 GeneDB mRNA 3399236 3400116 . + . mRNA SPAC959.07 ; systematic_id "SPAC959.07" ; colour "7" ; gene "rps403 ||| rps4-3 ||| rps4 ||| SPAC959.07" ; Alias "rps403" ; db_xref "SPD:09/09H06" ; synonym "rps4-3 ||| rps4" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR145C and YHR203C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; protein biosynthesis
GO:0003735; structural constituent of ribosome" ; primary_name "rps403" ; product "40S ribosomal protein S4 (predicted)" ;
chromosome1 GeneDB mRNA 1702482 1704073 . - . mRNA SPAC664.01c ; systematic_id "SPAC664.01c" ; colour "2" ; gene "swi6 ||| SPAC824.10c ||| SPAC664.01c" ; Alias "swi6" ; db_xref "SPD:14/14C10" ; synonym "SPAC824.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8200530; date=19700101 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, accumulation of non- coding outer repeat transcripts; cv=phenotype; date=20100318 ||| term=chromodomain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=human CBX1 and CBX3 and CBX5 ortholog; qualifier=predicted; date=20100826" ; GO "GO:0005721; centric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0031493; nucleosomal histone binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0072356; chromosome passenger complex localization to kinetochore
GO:0007535; donor selection
GO:0007533; mating type switching
GO:0007062; sister chromatid cohesion" ; primary_name "swi6" ; product "chromodomain protein Swi6" ;
chromosome1 GeneDB mRNA 3106840 3108006 . + . mRNA SPAC589.09 ; db_xref "SPD:50/50D05" ; systematic_id "SPAC589.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR380W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0031505; cell wall organization and biogenesis
GO:0015914; phospholipid transport
GO:0005737; cytoplasm
GO:0008525; phosphatidylcholine transporter activity
GO:0008526; phosphatidylinositol transporter activity" ; gene "SPAC589.09" ; product "sec14 cytosolic factor family (predicted)" ;
chromosome1 GeneDB mRNA 4418940 4422511 . - . mRNA SPAC29E6.10c ; systematic_id "SPAC29E6.10c" ; colour "10" ; gene "SPAC30.14c ||| SPAC29E6.10c" ; Alias "SPAC30.14c" ; db_xref "SPD:30/30C07" ; synonym "SPAC30.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YNL091W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "SPAC30.14c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 3176488 3177452 . - . mRNA SPAC3G9.04 ; systematic_id "SPAC3G9.04" ; colour "2" ; gene "ssu72 ||| SPAC3G9.04" ; Alias "ssu72" ; db_xref "SPD:07/07D04" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0006369; termination of RNA polymerase II transcription
GO:0006352; transcription initiation
GO:0042578; phosphoric ester hydrolase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL222W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ssu72" ; product "phosphoric ester hydrolase Ssu72 (predicted)" ; EC_number "3.1.-.-" ;
chromosome1 GeneDB mRNA 2068614 2071530 . + . mRNA SPAC3C7.04 ; db_xref "SPD:28/28D11" ; systematic_id "SPAC3C7.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPAC1486.10 and SPCC417.09C and SPBP8B7.30C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC3C7.04" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB mRNA 3367496 3369539 . - . mRNA SPAC26A3.15c ; systematic_id "SPAC26A3.15c" ; colour "2" ; gene "nsp1 ||| SPAC26A3.15c" ; Alias "nsp1" ; db_xref "SPD:26/26C06" ; GO "; nuclear membrane
GO:0005643; nuclear pore
GO:0051301; cell division
GO:0006913; nucleocytoplasmic transport
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=FG repeat; date=19700101 ||| term=orthologous to S. cerevisiae YJL041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nsp1" ; product "nucleoporin Nsp1" ;
chromosome1 GeneDB mRNA 5499782 5501092 . + . mRNA SPAC869.07c ; systematic_id "SPAC869.07c" ; colour "2" ; gene "mel1 ||| SPAC869.07c" ; note "MEL genes are absent from S. cerevisiaie sequenced strain" ; Alias "mel1" ; db_xref "SPD:44/44C02" ; GO "GO:0004557; alpha-galactosidase activity
GO:0005995; melibiose catabolism
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=experimental tools, gene reporter system; db_xref=PMID:15580593; cv=ex_tools; date=20060222 ||| term=orthologous to S. cerevisiae MEL2 and MEL5 and MEL6 and MEL1; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mel1" ; product "alpha-galactosidase, melibiase" ; EC_number "3.2.1.22" ;
chromosome1 GeneDB mRNA 5142407 5143558 . + . mRNA SPAC29A4.03c ; db_xref "SPD:03/03A08" ; systematic_id "SPAC29A4.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR146W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131 ||| term=warning, frameshifted; date=20110131 ||| term=warning, sequence error in genomic data; date=20110131 ||| term=error confirmed http://www.sanger.ac.uk/Projects/S_pombe/ sequence_discrepancies.shtml; date=20110131" ; colour "7" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; gene "SPAC29A4.03c" ; product "mitochondrial ribosomal protein subunit Mrps9 (predicted)" ;
chromosome1 GeneDB mRNA 4718628 4721488 . - . mRNA SPAC1834.11c ; systematic_id "SPAC1834.11c" ; colour "7" ; gene "sec18 ||| SPAC1834.11c" ; Alias "sec18" ; db_xref "SPD:28/28E07" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0016887; ATPase activity
GO:0042144; vacuole fusion, non-autophagic
GO:0005524; ATP binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YBR080C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sec18" ; product "secretory pathway protein Sec18 (predicted)" ;
chromosome1 GeneDB mRNA 3045121 3047344 . - . mRNA SPAC24C9.05c ; systematic_id "SPAC24C9.05c" ; colour "10" ; gene "SPAC24C9.05c ||| mug70" ; note "removed annotations from PMID:20537132, pers. comm. Li-Lin Du" ; Alias "mug70" ; db_xref "SPD:37/37H04" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=octicosapeptide repeat; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "mug70" ; product "conserved protein Mug20" ;
chromosome1 GeneDB mRNA 4005828 4007096 . - . mRNA SPAC27E2.03c ; db_xref "SPD:18/18F11" ; systematic_id "SPAC27E2.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=orthologous to S. cerevisiae YBR025C and YHL014C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005525; GTP binding" ; gene "SPAC27E2.03c" ; product "GTP binding protein (predicted)" ;
chromosome1 GeneDB mRNA 2360392 2361877 . - . mRNA SPAC17G8.11c ; systematic_id "SPAC17G8.11c" ; colour "2" ; gene "SPAC17G8.11c" ; Alias "imt3" ; db_xref "SPD:16/16E03" ; GO "GO:0000030; mannosyltransferase activity
GO:0051999; mannose inositol phosphoceramide biosynthetic process
GO:0033106; cis-Golgi network membrane
GO:0032588; trans-Golgi network membrane
GO:0006897; endocytosis
GO:0007038; endocytosed protein transport to vacuole" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR161W and YPL057C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; cv=phenotype; db_xref=PMID:20388730; date=20100622 ||| term=name description, Ipc Mannosyl- Transferase homologue; db_xref=PMID:20388730; date=20100622 ||| term=phenotype, cell morphology, pear shaped; db_xref=PMID:20388730; date=20100622 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Fungi only; date=20100827" ; primary_name "imt3" ; product "mannosyltransferase Imt3" ;
chromosome1 GeneDB mRNA 1134697 1136003 . - . mRNA SPAC56F8.05c ; systematic_id "SPAC56F8.05c" ; colour "10" ; gene "SPAC56F8.05c ||| mug64" ; Alias "mug64" ; db_xref "SPD:23/23G07" ; GO "GO:0005794; Golgi apparatus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL041W; date=19700101 ||| term=BAR domain; date=20071231 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mug64" ; product "BAR domain protein (predicted)" ;
chromosome1 GeneDB mRNA 1051720 1052656 . + . mRNA SPAC23C4.13 ; systematic_id "SPAC23C4.13" ; colour "7" ; gene "bet1 ||| SPAC23C4.13" ; Alias "bet1" ; db_xref "SPD:03/03G12" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005484; SNAP receptor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bet1" ; product "SNARE Bet1 (predicted)" ;
chromosome1 GeneDB mRNA 4590152 4591524 . + . mRNA SPAC12B10.10 ; db_xref "SPD:50/50E08" ; systematic_id "SPAC12B10.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC12B10.10" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 5460195 5461900 . + . mRNA SPAC1039.06 ; systematic_id "SPAC1039.06" ; colour "7" ; gene "SPAC1039.06" ; note "S. cerevisiae YGL196W is either pseudo, or has 3 frameshifts" ; db_xref "SPD:19/19H08" ; GO "GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0008784; alanine racemase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL196W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "alanine racemase (predicted)" ;
chromosome1 GeneDB mRNA 5358944 5360504 . + . mRNA SPAC4D7.05 ; systematic_id "SPAC4D7.05" ; colour "2" ; gene "sum1 ||| SPAC4D7.05 ||| tif34" ; Alias "sum1" ; db_xref "SPD:40/40E05" ; synonym "tif34" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9560390; date=19700101 ||| term=orthologous to S. cerevisiae YMR146C; date=19700101 ||| term=localization dependent on 26S proteasome; db_xref=PMID:12006658; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Suppressor of Uncontrolled Mitosis; cv=name_description; date=20100607" ; GO "GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
GO:0034399; nuclear periphery
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003743; translation initiation factor activity
GO:0071470; cellular response to osmotic stress
GO:0006413; translational initiation" ; primary_name "sum1" ; product "translation initiation factor eIF3i" ;
chromosome1 GeneDB mRNA 4358824 4359978 . + . mRNA SPAC23D3.11 ; systematic_id "SPAC23D3.11" ; colour "7" ; gene "SPAC23D3.11 ||| ayr1" ; Alias "ayr1" ; db_xref "SPD:12/12B01" ; GO "GO:0006654; phosphatidic acid biosynthesis
GO:0000140; acylglycerone-phosphate reductase activity
GO:0005783; endoplasmic reticulum
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL124W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ayr1" ; product "1-acyldihydroxyacetone phosphate reductase (predicted)" ; EC_number "1.1.1.101" ;
chromosome1 GeneDB mRNA 898045 898994 . - . mRNA SPAC22H12.04c ; systematic_id "SPAC22H12.04c" ; colour "7" ; gene "rps102 ||| rps1-2 ||| rps3a-2 ||| SPAC22H12.04c" ; Alias "rps102" ; db_xref "SPD:31/31H09" ; synonym "rps1-2 ||| rps3a-2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR441C and YML063W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps102" ; product "40S ribosomal protein S3a (predicted)" ;
chromosome1 GeneDB mRNA 3491252 3492566 . - . mRNA SPAC328.07c ; db_xref "SPD:12/12D06" ; systematic_id "SPAC328.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR290W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0006623; protein targeting to vacuole
GO:0005783; endoplasmic reticulum
GO:0010959; regulation of metal ion transport
GO:0005789; endoplasmic reticulum membrane
GO:0006875; metal ion homeostasis" ; gene "SPAC328.07c" ; product "heavy metal ion homeostasis protein (predicted)" ;
chromosome1 GeneDB mRNA 35768 36382 . - . mRNA SPAC977.05c ; db_xref "SPD:51/51B08" ; systematic_id "SPAC977.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YGL258W and YOR387C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC977.05c" ; product "conserved fungal family" ;
chromosome1 GeneDB mRNA 4967998 4969599 . + . mRNA SPAC1952.01 ; systematic_id "SPAC1952.01" ; colour "7" ; gene "SPAC1B3.19 ||| SPAC1952.01" ; Alias "SPAC1B3.19" ; db_xref "SPD:23/23D09" ; synonym "SPAC1B3.19" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20061211 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061211 ||| term=orthologous to S. cerevisiae YLR459W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0003923; GPI-anchor transamidase activity
GO:0016255; attachment of GPI anchor to protein
GO:0042765; GPI-anchor transamidase complex" ; primary_name "SPAC1B3.19" ; product "Pig-U (predicted)" ;
chromosome1 GeneDB mRNA 2426514 2427893 . - . mRNA SPAC6B12.19 ; Alias "rsa3" ; synonym "new7" ; systematic_id "SPAC6B12.19" ; GO "GO:0000027; ribosomal large subunit assembly
GO:0030687; preribosome, large subunit precursor
GO:0005730; nucleolus" ; colour "7" ; controlled_curation "term=conserved in Fungi; date=20090716 ||| term=similar to S. cerevisiae YLR221C; date=20090716 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "rsa3" ; product "ribosome assembly protein Rsa3 (predicted)" ;
chromosome1 GeneDB mRNA 5372646 5373658 . - . mRNA SPAC4D7.14 ; Alias "new13" ; systematic_id "SPAC4D7.14" ; controlled_curation "term=orthologous to S. cerevisiae YGL108C; date=20090814 ||| term=conserved in Fungi; date=20100427 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=warning, protein coding overlap with adjacent gene; date=20110131" ; colour "10" ; primary_name "new13" ; product "conserved fungal protein of unknown function" ;
chromosome1 GeneDB mRNA 3529970 3532006 . + . mRNA SPAC16E8.16 ; db_xref "SPD:18/18D10" ; systematic_id "SPAC16E8.16" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "2" ; GO "GO:0030528; RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0005634; nucleus" ; gene "SPAC16E8.16" ; product "transcription factor TFIIB" ;
chromosome1 GeneDB mRNA 5004629 5006996 . + . mRNA SPAC890.03 ; systematic_id "SPAC890.03" ; colour "2" ; gene "ppk16 ||| SPAC890.03 ||| mug92" ; Alias "ppk16" ; db_xref "SPD:38/38B10" ; synonym "mug92" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YPL150W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "ppk16" ; product "serine/threonine protein kinase Ppk16 (predicted)" ;
chromosome1 GeneDB mRNA 2783587 2785086 . - . mRNA SPAC1805.06c ; systematic_id "SPAC1805.06c" ; colour "7" ; gene "hem2 ||| SPAC1805.06c" ; Alias "hem2" ; db_xref "SPD:14/14D03" ; GO "GO:0004655; porphobilinogen synthase activity
GO:0006783; heme biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060725 ||| term=orthologous to S. cerevisiae YGL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hem2" ; product "porphobilinogen synthase Hem2 (predicted)" ; EC_number "4.2.1.24" ; reserved_name "hem2" ;
chromosome1 GeneDB mRNA 430057 430991 . + . mRNA SPAC13C5.04 ; db_xref "SPD:09/09A12" ; systematic_id "SPAC13C5.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR126C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; GO "GO:0005737; cytoplasm" ; gene "SPAC13C5.04" ; product "amidotransferase (predicted)" ;
chromosome1 GeneDB mRNA 731938 732665 . + . mRNA SPAC22G7.03 ; db_xref "SPD:08/08D07" ; systematic_id "SPAC22G7.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC22G7.03" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4254708 4255635 . + . mRNA SPAC21E11.04 ; systematic_id "SPAC21E11.04" ; colour "2" ; gene "ppr1 ||| SPAC21E11.04" ; note "is similar to SGD:S0007536 MPR1 not found in the S288C strain" ; Alias "ppr1" ; db_xref "SPD:07/07B11" ; GO "GO:0046941; azetidine-2-carboxylic acid acetyltransferase activity
GO:0034599; cellular response to oxidative stress
GO:0034599; cellular response to oxidative stress
GO:0006526; arginine biosynthetic processs
GO:0006562; proline catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, resistance to AZC; cv=phenotype; db_xref=PMID:12761200; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:12761200; date=20090729" ; primary_name "ppr1" ; product "L-azetidine-2-carboxylic acid acetyltransferase" ; EC_number "2.3.1.-" ;
chromosome1 GeneDB mRNA 4681284 4683213 . + . mRNA SPAC144.14 ; systematic_id "SPAC144.14" ; colour "2" ; gene "klp8 ||| SPAC144.14" ; Alias "klp8" ; db_xref "SPD:45/45C05" ; GO "GO:0071341; medial cortical node
GO:0003777; microtubule motor activity
GO:0010970; microtubule-based transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201" ; primary_name "klp8" ; product "kinesin-like protein Klp8" ;
chromosome1 GeneDB mRNA 399476 402225 . - . mRNA SPAC31A2.07c ; systematic_id "SPAC31A2.07c" ; colour "7" ; gene "dbp10 ||| SPAC31A2.07c" ; Alias "dbp10" ; db_xref "SPD:38/38G05" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0004004; ATP-dependent RNA helicase activity
GO:0005730; nucleolus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDL031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "dbp10" ; product "ATP-dependent RNA helicase Dbp10 (predicted)" ;
chromosome1 GeneDB mRNA 355805 357126 . - . mRNA SPAC630.06c ; db_xref "SPD:09/09D09" ; systematic_id "SPAC630.06c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL050C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC630.06c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 4765651 4766814 . - . mRNA SPAC1782.06c ; systematic_id "SPAC1782.06c" ; colour "7" ; db_xref "SPD:11/11B03" ; Alias "phb1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR132C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0000001; mitochondrion inheritance
GO:0005743; mitochondrial inner membrane
GO:0006457; protein folding
GO:0007007; inner mitochondrial membrane organization" ; primary_name "phb1" ; product "prohibitin Phb1 (predicted)" ;
chromosome1 GeneDB mRNA 1922592 1924915 . + . mRNA SPAP14E8.02 ; systematic_id "SPAP14E8.02" ; colour "7" ; GO "GO:0000790; nuclear chromatin
GO:0003682; chromatin binding
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR183C and YDR501W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, from cerevisie; date=20100918" ; gene "SPAP14E8.02" ; product "FHA domain protein Tos4 (predicted)" ; reserved_name "tos4" ;
chromosome1 GeneDB mRNA 2528030 2528644 . + . mRNA SPAC25H1.03 ; systematic_id "SPAC25H1.03" ; colour "2" ; gene "mug66 ||| SPAC25H1.03" ; Alias "mug66" ; db_xref "SPD:06/06G07" ; synonym "mug66" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030437; sporulation (sensu Fungi)
GO:0007127; meiosis I
GO:0007126; meiosis" ; primary_name "mug66" ; product "meiotically upregulated gene Mug66" ;
chromosome1 GeneDB mRNA 2123066 2124449 . + . mRNA SPAC20H4.07 ; systematic_id "SPAC20H4.07" ; colour "2" ; gene "rhp57 ||| SPAC20H4.07" ; Alias "rhp57" ; db_xref "SPD:50/50D04" ; obsolete_name "SPAC145.01" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:11560889; date=20100730 ||| term=phenotype, nuclear morphology defects; db_xref=PMID:11560889; date=20100730 ||| term=phenotype, DNA recombination defects, gene conversion, reduced; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, long tract gene conversion, increased; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, crossover, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=RecA family; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=helix-hairpin-helix; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, Rhp57 facilitates Rhp51 assembly at damage sites independently of Swi5; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant produced each recombination class (gene conversion, crossover and long tract gene conversion) at frequencies similar to that of the rhp51delta single mutant; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=misc, increased frequency of long tract gene conversion in the rhp57 delta single mutant was suppressed in the swi5delta rhp57delta double mutant, to a level similar to that observed in the rhp51 mutant; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant showed a repair profile very similar to that to the rhp51delta single mutant; db_xref=PMID:17304215; cv=misc; date=20090210" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0033170; DNA-protein loading ATPase activity
GO:0046982; protein heterodimerization activity
GO:0000724; double-strand break repair via homologous recombination
GO:0007131; meiotic recombination
GO:0042148; strand invasion
GO:0033062; Rhp55-Rhp57 complex
GO:0000730; DNA recombinase assembly" ; primary_name "rhp57" ; product "RecA family ATPase Rhp57" ;
chromosome1 GeneDB mRNA 4761262 4762908 . + . mRNA SPAC1782.03 ; systematic_id "SPAC1782.03" ; colour "10" ; gene "SPAC1782.03" ; db_xref "SPD:16/16D05" ; Alias "saf3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human MFAP1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "saf3" ; product "microfibrillar-associated protein family protein" ; reserved_name "saf3" ;
chromosome1 GeneDB mRNA 913657 914031 . + . mRNA SPAC1687.07 ; db_xref "SPD:42/42A08" ; systematic_id "SPAC1687.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL012C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; gene "SPAC1687.07" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 2435909 2436895 . + . mRNA SPAC6B12.13 ; db_xref "SPD:05/05E02" ; systematic_id "SPAC6B12.13" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004864; protein phosphatase inhibitor activity
GO:0006470; protein amino acid dephosphorylation" ; gene "SPAC6B12.13" ; product "protein phosphatase inhibitor (predicted)" ;
chromosome1 GeneDB mRNA 2164240 2166291 . + . mRNA SPAC23C11.16 ; systematic_id "SPAC23C11.16" ; colour "2" ; db_xref "SPD:27/27F06" ; Alias "plo1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7744248; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:7744248; date=20100726 ||| term=phenotype, multinucleate; db_xref=PMID:7744248; date=20100726 ||| term=misc, stress response pathway signalling (SRP), mediated phosphorylation of Ser402 regulates the timing of commitment to mitosis; db_xref=PMID:15917811; cv=misc; date=19700101 ||| term=misc, stress response pathway signalling (SRP), mediated phosphorylation of Ser402 ensures efficient reinitiation of tip growth and cell division during recovery from particular stress; db_xref=PMID:15917811; cv=misc; date=19700101 ||| term=misc, function depends on recruitment to the spindle pole body; db_xref=PMID:12186944; date=19700101 ||| term=misc, function depends on a functional spindle assembly checkpoint; db_xref=PMID:12186944; date=19700101 ||| term=localization, Polo box dependent; date=19700101 ||| term=target is MPF complex; db_xref=PMID:12815070; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YMR001C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; residue=S402; db_xref=PMID:15917811; date=20091223 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0005816; spindle pole body
; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0034605; cellular response to heat
GO:0000915; cytokinesis, contractile ring formation
GO:0010687; site selection involved in cell cycle cytokinesis
GO:0031031; positive regulation of septation initiation signaling
GO:0090307; spindle assembly involved in mitosis
GO:0007089; traversing start control point of mitotic cell cycle" ; primary_name "plo1" ; product "Polo kinase Plo1" ; EC_number "2.7.11.1" ;
chromosome1 GeneDB mRNA 4951389 4954199 . + . mRNA SPAC1B3.13 ; db_xref "SPD:29/29D06" ; systematic_id "SPAC1B3.13" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex" ; gene "SPAC1B3.13" ; product "U3 snoRNP-associated protein Nan1 (predicted)" ;
chromosome1 GeneDB mRNA 4999993 5002266 . - . mRNA SPAC1952.17c ; systematic_id "SPAC1952.17c" ; colour "7" ; gene "SPAC1952.17c ||| SPAC890.01c" ; db_xref "SPD:27/27A02" ; synonym "SPAC890.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB mRNA 388257 389191 . + . mRNA SPAC31A2.02 ; systematic_id "SPAC31A2.02" ; colour "7" ; gene "trm112 ||| SPAC31A2.02" ; Alias "trm112" ; db_xref "SPD:05/05G09" ; GO "GO:0005737; cytoplasm
GO:0035657; eRF1 methyl transferase complex
GO:0005634; nucleus
GO:0043528; tRNA (m2G10) methyltransferase complex
GO:0030234; enzyme regulator activity
GO:0018364; peptidyl-glutamine methylation
GO:0030488; tRNA methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR046W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trm112" ; product "protein and tRNA methyltransferase regulatory subunit Trm112 (predicted)" ;
chromosome1 GeneDB mRNA 621189 622280 . - . mRNA SPAC1F3.04c ; systematic_id "SPAC1F3.04c" ; colour "7" ; gene "SPAC1F3.04c" ; db_xref "SPD:14/14G04" ; Alias "tsr3" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0046872; metal ion binding
GO:0030490; maturation of SSU-rRNA" ; controlled_curation "term=orthologous to S. cerevisiae YOR006C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "tsr3" ; product "SSU-rRNA maturation protein Tsr3 (predicted)" ; reserved_name "tsr3" ;
chromosome1 GeneDB mRNA 1700227 1701657 . - . mRNA SPAC824.09c ; db_xref "SPD:22/22C07" ; systematic_id "SPAC824.09c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL044C and YDR524C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0008060; ARF GTPase activator activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0030136; clathrin-coated vesicle
GO:0051056; regulation of small GTPase mediated signal transduction" ; gene "SPAC824.09c" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB mRNA 5462177 5463789 . - . mRNA SPAC1039.07c ; db_xref "SPD:20/20G12" ; systematic_id "SPAC1039.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "10" ; gene "SPAC1039.07c" ; product "aminotransferase class-III, unknown specificity" ;
chromosome1 GeneDB mRNA 3077676 3080344 . + . mRNA SPAC16A10.01 ; db_xref "SPD:29/29A03" ; systematic_id "SPAC16A10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL107C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC16A10.01" ; product "DUF1212 family protein" ;
chromosome1 GeneDB mRNA 4475257 4476465 . + . mRNA SPAC17C9.15c ; db_xref "SPD:01/01C10" ; systematic_id "SPAC17C9.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC17C9.15c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 146974 147879 . + . mRNA SPAC5H10.01 ; db_xref "SPD:12/12D12" ; systematic_id "SPAC5H10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c14orf159 ortholog; date=20091004" ; colour "10" ; gene "SPAC5H10.01" ; product "DUF1445 family protein" ;
chromosome1 GeneDB mRNA 2057561 2058739 . + . mRNA SPAC732.01 ; systematic_id "SPAC732.01" ; colour "7" ; gene "vma11 ||| SPAC732.01" ; Alias "vma11" ; db_xref "SPD:13/13D06" ; GO "GO:0000220; vacuolar proton-transportting V-type ATPase, V0 domain
GO:0005524; ATP binding
GO:0046961; proton-transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL234C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vma11" ; product "V-type ATPase V0 proteolipid subunit (predicted)" ;
chromosome1 GeneDB mRNA 5195711 5199712 . - . mRNA SPAC19D5.09c ; Alias "Tf2-8" ; systematic_id "SPAC19D5.09c" ; synonym "SPAC13D1.02c" ; colour "4" ; controlled_curation "term=tf2-type transposon; date=19700101" ; gene "Tf2-8 ||| SPAC19D5.09c" ; primary_name "Tf2-8" ; product "retrotransposable element" ;
chromosome1 GeneDB mRNA 3866588 3868327 . + . mRNA SPAC1071.06 ; systematic_id "SPAC1071.06" ; colour "2" ; gene "arp9 ||| SPAC1071.06" ; Alias "arp9" ; db_xref "SPD:25/25D02" ; GO "GO:0016586; RSC complex
GO:0016514; SWI/SNF complex
GO:0000790; nuclear chromatin
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR033W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to Brefeldin A ; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110" ; primary_name "arp9" ; product "SWI/SNF and RSC complex subunit Arp9" ;
chromosome1 GeneDB mRNA 1500906 1502412 . + . mRNA SPAC5D6.07c ; systematic_id "SPAC5D6.07c" ; colour "2" ; gene "SPAC5D6.07c ||| pxa1" ; Alias "pxa1" ; db_xref "SPD:24/24A03" ; GO "GO:0005768; endosome
GO:0031303; integral to endosome membrane
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0042147; retrograde transport, endosome to Golgi
GO:0007033; vacuole organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18256467; date=20080211 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; evidence=TAS; db_xref=PMID:18256467; date=20080211 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pxa1" ; product "PXA domain protein Pxa1" ;
chromosome1 GeneDB mRNA 4257734 4259267 . + . mRNA SPAC21E11.06 ; systematic_id "SPAC21E11.06" ; colour "7" ; gene "tif224 ||| SPAC21E11.06" ; Alias "tif224" ; db_xref "SPD:23/23B01" ; GO "GO:0005851; eukaryotic translation initiation factor 2B complex
GO:0006413; translational initiation
GO:0003743; translation initiation factor activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, leukoencephalopathy; date=20060926 ||| term=orthologous to S. cerevisiae YGR083C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, neurological disorders; date=20060926" ; primary_name "tif224" ; product "translation initiation factor eIF2B delta subunit (predicted)" ;
chromosome1 GeneDB mRNA 2601128 2604153 . + . mRNA SPAC823.12 ; systematic_id "SPAC823.12" ; colour "7" ; gene "vps11 ||| SPAC823.12" ; Alias "vps11" ; db_xref "SPD:39/39A09" ; GO "GO:0030897; HOPS complex
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006895; Golgi to endosome transport
GO:0045324; late endosome to vacuole transport
GO:0016567; protein ubiquitination
GO:0042144; vacuole fusion, non-autophagic
GO:0006904; vesicle docking during exocytosis
GO:0000329; fungal-type vacuole membrane
GO:0070314; G1 to G0 transition
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YMR231W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps11" ; product "HOPs complex subunit Pep5/Vps11 (predicted)" ;
chromosome1 GeneDB mRNA 571878 574394 . - . mRNA SPAC13A11.01c ; systematic_id "SPAC13A11.01c" ; colour "2" ; gene "rga8 ||| SPAC2F7.18c ||| SPAC13A11.01c" ; Alias "rga8" ; db_xref "SPD:28/28E05" ; synonym "SPAC2F7.18c" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:14506270; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL047W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Rho1; qualifier=predicted; db_xref=PMID:14506270; date=19700101 ||| term=target of Shk1; qualifier=phosphorylated_by; db_xref=PMID:14506270; date=20100826" ; GO "GO:0051285; cell cortex of cell tip
GO:0032153; cell division site
GO:0031097; medial ring
; protein binding
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0005100; Rho GTPase activator activity
GO:0032319; regulation of Rho GTPase activity" ; primary_name "rga8" ; product "Rho-type GTPase activating protein Rga8" ;
chromosome1 GeneDB mRNA 4890335 4890778 . + . mRNA SPAC19B12.04 ; systematic_id "SPAC19B12.04" ; colour "7" ; gene "rps3001 ||| rps30-1 ||| SPAC19B12.04" ; Alias "rps3001" ; db_xref "SPD:01/01B04" ; synonym "rps30-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR287C-A and YOR182C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rps3001" ; product "40S ribosomal protein S30 (predicted)" ;
chromosome1 GeneDB mRNA 4754160 4754788 . + . mRNA SPAPYUG7.06 ; Alias "mug67" ; systematic_id "SPAPYUG7.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human PPEDE1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAPYUG7.06 ||| mug67" ; primary_name "mug67" ; product "PPPDE peptidase family (predicted)" ;
chromosome1 GeneDB mRNA 389466 390547 . + . mRNA SPAC31A2.03 ; systematic_id "SPAC31A2.03" ; colour "7" ; gene "mrpl11 ||| SPAC31A2.03" ; Alias "mrpl11" ; db_xref "SPD:08/08C06" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL202W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mrpl11" ; product "mitochondrial ribosomal protein subunit L11 (predicted)" ;
chromosome1 GeneDB mRNA 273152 274921 . + . mRNA SPAC1F5.09c ; systematic_id "SPAC1F5.09c" ; colour "2" ; gene "shk2 ||| pak2 ||| SPAC1F5.09c" ; Alias "shk2" ; db_xref "SPD:36/36B11" ; synonym "pak2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9660818; date=19700101 ||| term=PAK-related kinase family; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=pathway, Mkh1-Pek1-Spm1 MAP kinase; cv=pathway; qualifier=activates; date=19700101 ||| term=orthologous to S. cerevisiae YHL007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0071507; MAPKKK cascade during involved in conjugation with cellular fusion
GO:0006468; protein amino acid phosphorylation
GO:0032488; Cdc42 protein signal transduction" ; primary_name "shk2" ; product "PAK-related kinase Shk2" ;
chromosome1 GeneDB mRNA 4534674 4536686 . - . mRNA SPAC27D7.13c ; systematic_id "SPAC27D7.13c" ; colour "2" ; gene "ssm4 ||| SPAC27D7.13c ||| SPAC637.01c" ; Alias "ssm4" ; db_xref "SPD:27/27E02" ; synonym "SPAC637.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:9167972; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=orthologous to S. cerevisiae YPL174C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030981; cortical microtubule cytoskeleton
GO:0005881; cytoplasmic microtubule
GO:0005869; dynactin complex
GO:0005816; spindle pole body
GO:0005816; spindle pole body
GO:0008017; microtubule binding
GO:0051010; microtubule plus-end binding
GO:0005515; protein binding
GO:0000753; cellular morphogenesis during conjugation with cellular fusion
GO:0000753; cellular morphogenesis during conjugation with cellular fusion
GO:0030989; horsetail nuclear movement
GO:0007127; meiosis I
GO:0007131; meiotic recombination
GO:0000743; nuclear migration during conjugation with cellular fusion
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030437; sporulation (sensu Fungi)
GO:0007129; synapsis" ; primary_name "ssm4" ; product "p150-Glued" ;
chromosome1 GeneDB mRNA 4422730 4424700 . + . mRNA SPAC16.01 ; systematic_id "SPAC16.01" ; colour "2" ; gene "rho2 ||| SPAC16.01" ; Alias "rho2" ; db_xref "SPD:18/18F05" ; GO "GO:0051286; cell tip
GO:0032153; cell division site
GO:0030427; site of polarized growth
GO:0005525; GTP binding
GO:0003924; GTPase activity
; protein binding
; protein binding
GO:0032949; regulation of alpha-glucan biosynthesis
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9405296; date=19700101 ||| term=Rho family; date=19700101 ||| term=orthologous to S. cerevisiae YNL090W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=modification, gerenylgerenylated; cv=pt_mod; date=19700101" ; primary_name "rho2" ; product "Rho family GTPase Rho2" ;
chromosome1 GeneDB mRNA 3317665 3318876 . - . mRNA SPAPB1E7.11c ; systematic_id "SPAPB1E7.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAPB1E7.11c" ; product "sequence orphan" ; note "term=very low similarity to S. cerevisiae YFR046C" ;
chromosome1 GeneDB mRNA 3605651 3607410 . + . mRNA SPAC17G6.10 ; systematic_id "SPAC17G6.10" ; colour "2" ; gene "ssr1 ||| SPAC17G6.10" ; Alias "ssr1" ; db_xref "SPD:25/25E05" ; GO "GO:0016586; RSC complex
GO:0016514; SWI/SNF complex
GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0006338; chromatin remodeling
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Swi/Snf RSC; cv=name_description; date=20061009 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YFR037C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ssr1" ; product "SWI/SNF and RSC complex subunit Ssr1" ;
chromosome1 GeneDB mRNA 3401279 3404127 . - . mRNA SPAC959.09c ; systematic_id "SPAC959.09c" ; colour "2" ; gene "apc5 ||| SPAP32A8.01c ||| SPAC959.09c" ; Alias "apc5" ; db_xref "SPD:49/49F01" ; synonym "SPAP32A8.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR249C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008054; cyclin catabolism
GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0005515; protein binding" ; primary_name "apc5" ; product "anaphase-promoting complex subunit Apc5" ;
chromosome1 GeneDB mRNA 3293576 3297452 . + . mRNA SPAPB1E7.05 ; Alias "gde1" ; systematic_id "SPAPB1E7.05" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=SPX domain protein; qualifier=inferred from context; date=20091119 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0046475; glycerophospholipid catabolic process
GO:0047389; glycerophosphocholine phosphodiesterase activity
GO:0005737; cytoplasm" ; gene "SPAPB1E7.05 ||| gde1" ; primary_name "gde1" ; product "glycerophosphoryl diester phosphodiesterase Gde1 (predicted)" ;
chromosome1 GeneDB mRNA 4895775 4896994 . - . mRNA SPAC19B12.07c ; db_xref "SPD:16/16D12" ; systematic_id "SPAC19B12.07c" ; GO "GO:0006355; regulation of transcription DNA- dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human ZNF277 ortholog; date=20091004" ; colour "10" ; gene "SPAC19B12.07c" ; product "human ZNF277 ortholog" ;
chromosome1 GeneDB mRNA 2880963 2882176 . - . mRNA SPACUNK4.15 ; db_xref "SPD:07/07B06" ; systematic_id "SPACUNK4.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR247W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0004113; 2',3'-cyclic-nucleotide 3'- phosphodiesterase activity
GO:0009187; cyclic nucleotide metabolic process
GO:0030136; clathrin-coated vesicle" ; gene "SPACUNK4.15" ; product "2',3'-cyclic-nucleotide 3'-phosphodiesterase (predicted)" ;
chromosome1 GeneDB mRNA 4746193 4748438 . - . mRNA SPAPYUG7.02c ; Alias "sin1" ; systematic_id "SPAPYUG7.02c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL078W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; evidence=IDA; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10428959; date=20100709" ; GO "GO:0005515; protein binding
GO:0045931; positive regulation of progression through mitotic cell cycle
GO:0031098; stress-activated protein kinase signaling pathway
GO:0033554; cellular response to stress
GO:0031929; TOR signaling pathway
GO:0031932; TORC 2 complex" ; gene "sin1 ||| SPAPYUG7.02c" ; primary_name "sin1" ; product "stress activated MAP kinase interacting protein Sin1" ;
chromosome1 GeneDB mRNA 3091021 3093228 . - . mRNA SPAC16A10.07c ; systematic_id "SPAC16A10.07c" ; colour "2" ; gene "taz1 ||| myb1 ||| myb ||| SPAC16A10.07c" ; note "provides a telomeric cap that prevents Ku from recognising telomeres as double strand breaks (Ku- dependent end-to-end fusions) (PMID 11172711) ||| requires a ss telomeric overhang for T-loop formation (PMID 15383525) ||| forms oligomeric donut structures (PMID 15383525)" ; Alias "taz1" ; db_xref "SPD:27/27C12" ; synonym "myb1 ||| myb" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, sumoylated; cv=pt_mod; db_xref=PMID:15932060; date=20061127 ||| term=phenotype, viable; cv=phenotype; date=20061127 ||| term=Myb family; cv=protein_family; date=20061127 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human TRF1 homolog; date=20071107 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=telobox motif; evidence=ISS; date=20081217 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:12620220; date=20101004" ; GO "GO:0000783; nuclear telomere cap complex
GO:0005724; nuclear telomeric heterochromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0042162; telomeric DNA binding
GO:0042162; telomeric DNA binding
GO:0000077; DNA damage checkpoint
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0006302; double-strand break repair
GO:0007131; meiotic recombination
GO:0007095; mitotic G2 checkpoint
GO:0031848; protection from non-homologous end joining at telomere
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0045141; telomere clustering
GO:0032201; telomere maintenance via semi- conservative replication
GO:0000723; telomere maintenance
GO:0031860; telomeric 3' overhang formation
GO:0031627; telomeric loop formation" ; primary_name "taz1" ; product "human TRF ortholog Taz1" ;
chromosome1 GeneDB mRNA 2079070 2082476 . - . mRNA SPAC3C7.08c ; systematic_id "SPAC3C7.08c" ; colour "2" ; gene "elf1 ||| SPAC3C7.08c" ; Alias "elf1" ; db_xref "SPD:47/47H10" ; GO "GO:0016887; ATPase activity
GO:0006406; mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0042274; ribosome small subunit biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12110682; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=chromodomain protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL226W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "elf1" ; product "AAA family ATPase Elf1" ;
chromosome1 GeneDB mRNA 353827 356466 . + . mRNA SPAC630.05 ; systematic_id "SPAC630.05" ; colour "7" ; gene "SPAC630.05 ||| gyp7" ; Alias "gyp7" ; db_xref "SPD:38/38A11" ; GO "GO:0016192; vesicle-mediated transport
GO:0016192; intracellular protein transport
GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL234C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gyp7" ; product "GTPase activating protein Gyp7 (predicted)" ; reserved_name "gyp7" ;
chromosome1 GeneDB mRNA 736735 738782 . + . mRNA SPAC22G7.05 ; db_xref "SPD:26/26G11" ; systematic_id "SPAC22G7.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YNL308C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; gene "SPAC22G7.05" ; product "krr family protein (predicted)" ;
chromosome1 GeneDB mRNA 1476928 1478358 . - . mRNA SPAC9.08c ; db_xref "SPD:11/11A10" ; systematic_id "SPAC9.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0016229; steroid dehydrogenase activity
GO:0008202; ergosterol metabolic process" ; gene "SPAC9.08c" ; product "steroid reductase (predicted)" ;
chromosome1 GeneDB mRNA 4558911 4561271 . + . mRNA SPAC637.11 ; systematic_id "SPAC637.11" ; colour "2" ; gene "suv3 ||| SPAC637.11 ||| pah1 ||| rpm2" ; note "RNA processosome mitochondrial, name description" ; Alias "rpm2" ; db_xref "SPD:26/26H08" ; synonym "pah1 ||| suv3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL029W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005759; mitochondrial matrix
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0006401; RNA catabolic process
GO:0000965; mitochondrial RNA 3'-end processing" ; primary_name "rpm2" ; product "mitochondrial ATP-dependent RNA helicase Rpm2" ;
chromosome1 GeneDB mRNA 3714161 3716472 . + . mRNA SPAC15A10.15 ; systematic_id "SPAC15A10.15" ; colour "2" ; gene "sgo2 ||| SPAC15A10.15" ; Alias "sgo2" ; db_xref "SPD:46/46E12" ; GO "GO:0000780; condensed nuclear chromosome, pericentric region
GO:0000792; heterochromatin
GO:0000778; kinetochore
GO:0072356; chromosome passenger complex localization to kinetochore
GO:0045143; homologous chromosome segregation
GO:0000070; mitotic sister chromatid segregation
GO:0034501; protein localization to kinetochore" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14730319; date=19700101 ||| term=localization dependent on Bub1p; db_xref=PMID:14730319; date=19700101 ||| term=human hsgo1 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YOR073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, ShuGOshin; cv=name_description; date=20090817" ; primary_name "sgo2" ; product "inner centromere protein, shugoshin Sgo2" ;
chromosome1 GeneDB mRNA 2465166 2466266 . + . mRNA SPAC19A8.11c ; db_xref "SPD:11/11F03" ; systematic_id "SPAC19A8.11c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR043C; date=19700101 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0007131; meiotic recombination" ; gene "SPAC19A8.11c" ; product "recombination protein Irc6 (predicted)" ;
chromosome1 GeneDB mRNA 1757593 1759202 . - . mRNA SPAC17A5.04c ; systematic_id "SPAC17A5.04c" ; colour "2" ; gene "mde10 ||| SPAC17A5.04c ||| mug139" ; Alias "mde10" ; db_xref "SPD:25/25G12" ; synonym "mug139" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:14871934; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; db_xref=PMID:14871934; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; GO "GO:0008237; metallopeptidase activity
GO:0008270; zinc ion binding
GO:0005619; spore wall (sensu Fungi)
GO:0005619; spore wall (sensu Fungi)
GO:0030476; spore wall assembly (sensu Fungi)
GO:0005789; endoplasmic reticulum membrane" ; primary_name "mde10" ; product "spore wall assembly ADAM family peptidase Mde10" ;
chromosome1 GeneDB mRNA 1313236 1314464 . - . mRNA SPAC6F12.03c ; systematic_id "SPAC6F12.03c" ; colour "2" ; gene "fsv1 ||| SPAC6F12.03c" ; note "fission yeast syntaxin homolog required for vacuolar sorting and fusion" ; Alias "fsv1" ; db_xref "SPD:09/09A05" ; GO "GO:0000138; Golgi trans cisterna
GO:0005484; SNAP receptor activity
GO:0006896; Golgi to vacuole transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; db_xref=PMID:14575697; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; db_xref=PMID:14575697; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fsv1" ; product "SNARE Fsv1" ;
chromosome1 GeneDB mRNA 3805798 3806987 . + . mRNA SPAC1556.07 ; systematic_id "SPAC1556.07" ; colour "2" ; gene "pmm1 ||| SPAC1556.07" ; Alias "pmm1" ; db_xref "SPD:32/32C09" ; GO "GO:0006886; intracellular protein transport
GO:0004615; phosphomannomutase activity
GO:0045047; protein targeting to ER
GO:0005829; cytosol
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006998; nuclear membrane organization and biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL045C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pmm1" ; product "phosphomannomutase Pmm1" ; EC_number "5.4.2.8" ;
chromosome1 GeneDB mRNA 4681614 4685626 . - . mRNA SPAC144.15c ; systematic_id "SPAC144.15c" ; colour "7" ; gene "SPAC144.15c ||| cog1" ; Alias "cog1" ; db_xref "SPD:37/37C12" ; GO "GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0000301; retrograde (vesicle recycling within Golgi) transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL223C; date=20070814 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cog1" ; product "Golgi transport complex subunit Cog1 (predicted)" ;
chromosome1 GeneDB mRNA 4074998 4077826 . - . mRNA SPAC19G12.15c ; systematic_id "SPAC19G12.15c" ; colour "2" ; gene "tpp1 ||| SPAC19G12.15c" ; Alias "tpp1" ; db_xref "SPD:28/28G10" ; GO "GO:0004805; trehalose-phosphatase activity
GO:0005991; trehalose metabolism
GO:0033554; cellular response to stress
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR074W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827" ; primary_name "tpp1" ; product "trehalose-6-phosphate phosphatase Tpp1" ; EC_number "3.1.3.12" ;
chromosome1 GeneDB mRNA 3180426 3181164 . - . mRNA SPAC3G9.02 ; systematic_id "SPAC3G9.02" ; colour "7" ; gene "oar2 ||| SPAC3G9.02" ; Alias "oar2" ; db_xref "SPD:08/08D08" ; GO "GO:0005739; mitochondrion
GO:0004316; 3-oxoacyl-[acyl-carrier-protein] reductase activity
GO:0006633; fatty acid biosynthesis
GO:0009105; lipoic acid biosynthetic process
GO:0009060; aerobic respiration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "oar2" ; product "3-oxoacyl-[acyl-carrier-protein] reductase Oar2 (predicted)" ; EC_number "1.1.1.100" ;
chromosome1 GeneDB mRNA 3800292 3801068 . - . mRNA SPAC1556.04c ; systematic_id "SPAC1556.04c" ; colour "7" ; gene "pcd1 ||| SPAC1556.04c ||| cdd1" ; private "GO:0055086 to hardwire term for queries" ; note "care not azr1" ; Alias "cdd1" ; db_xref "SPD:31/31F12" ; synonym "pcd1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR245C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004126; cytidine deaminase activity
GO:0006216; cytidine catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus" ; primary_name "cdd1" ; product "cytidine deaminase Ccd1 (predicted)" ; EC_number "3.5.4.5" ;
chromosome1 GeneDB mRNA 5095162 5095875 . - . mRNA SPAC1250.05 ; systematic_id "SPAC1250.05" ; colour "7" ; gene "rpl3002 ||| rpl30-2 ||| rpl30 ||| SPAC1250.05" ; Alias "rpl3002" ; db_xref "SPD:31/31F05" ; synonym "rpl30-2 ||| rpl30" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0006364; rRNA processing" ; primary_name "rpl3002" ; product "60S ribosomal protein L30 (predicted)" ;
chromosome1 GeneDB mRNA 442157 445567 . + . mRNA SPAC23E2.01 ; systematic_id "SPAC23E2.01" ; colour "2" ; gene "fep1 ||| gaf2 ||| SPAC23E2.01" ; Alias "fep1" ; db_xref "SPD:35/35C10" ; synonym "gaf2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally represses fio1; db_xref=PMID:11956219; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally represses fip1; db_xref=PMID:11956219; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally represses frp1; db_xref=PMID:11956219; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally represses str1; db_xref=PMID:12888492; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally represses str2; db_xref=PMID:12888492; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally represses str3; db_xref=PMID:12888492; cv=gene_ex; date=20070516 ||| term=zinc finger protein; date=19700101 ||| term=zf-GATA type; date=19700101 ||| term=gene expression, constitutive; cv=gene_ex; db_xref=PMID:8799335; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17477863; date=20090110 ||| term=DNA binding specificity, binds IDP (GATA) 5'-[AT]GATAA-3'; cv=DNA_binding_specificity; date=20100302" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0043565; sequence-specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006879; iron ion homeostasis
GO:0090375; negative regulation of transcription from RNA polymerase II promoter in response to iron ion starvation
GO:0034756; regulation of iron ion transport" ; primary_name "fep1" ; product "iron-sensing transcription factor Fep1" ;
chromosome1 GeneDB mRNA 3028145 3030455 . - . mRNA SPAC1786.01c ; systematic_id "SPAC1786.01c" ; colour "7" ; gene "SPAC31G5.20c ||| SPAC1786.01c" ; Alias "SPAC31G5.20c" ; db_xref "SPD:27/27G11" ; synonym "SPAC31G5.20c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR089C and YOR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004806; triacylglycerol lipase activity
GO:0005811; lipid particle
GO:0019433; triacylglycerol catabolism
GO:0006642; triacylglycerol mobilization" ; primary_name "SPAC31G5.20c" ; product "triacylglycerol lipase (predicted)" ; EC_number "3.1.1.3" ;
chromosome1 GeneDB mRNA 938421 939759 . - . mRNA SPAC1687.19c ; db_xref "SPD:22/22G12" ; systematic_id "SPAC1687.19c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008479; queuine tRNA-ribosyltransferase activity
GO:0008616; queuosine biosynthesis" ; gene "SPAC1687.19c" ; product "queuine tRNA-ribosyltransferase (predicted)" ; EC_number "2.4.2.29" ;
chromosome1 GeneDB mRNA 1385368 1387063 . - . mRNA SPAC57A10.12c ; systematic_id "SPAC57A10.12c" ; colour "2" ; gene "ura3 ||| SPAC57A10.12c" ; note "S. cerevisiae ortholog is cytoplasmic PMID:1409592" ; Alias "ura3" ; db_xref "KEGG:MAP00240; ||| SPD:20/20F02" ; GO "GO:0005739; mitochondrion
GO:0004158; dihydroorotate oxidase activity
GO:0006207; 'de novo' pyrimidine base biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL216W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ura3" ; product "dihydroorotate dehydrogenase Ura3" ; EC_number "1.3.3.1" ;
chromosome1 GeneDB mRNA 3810249 3810660 . - . mRNA SPAC1F12.03c ; db_xref "SPD:01/01D07" ; systematic_id "SPAC1F12.03c" ; colour "10" ; gene "SPAC1F12.03c" ; product "cytochrome C oxidase transmembrane region" ;
chromosome1 GeneDB mRNA 4767907 4769529 . - . mRNA SPAC1782.08c ; systematic_id "SPAC1782.08c" ; colour "7" ; gene "rex3 ||| SPAC1782.08c" ; Alias "rex3" ; db_xref "SPD:26/26A01" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008408; 3'-5' exonuclease activity
GO:0006396; RNA processing
GO:0043628; ncRNA 3'-end processing
GO:0034476; U5 snRNA 3'-end processing
GO:0000467; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR107W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rex3" ; product "exonuclease Rex3 (predicted)" ;
chromosome1 GeneDB mRNA 2741375 2745171 . - . mRNA SPAC6F6.06c ; systematic_id "SPAC6F6.06c" ; colour "2" ; gene "rax2 ||| SPAC6F6.06c" ; Alias "rax2" ; db_xref "SPD:30/30E03" ; GO "GO:0031234; extrinsic to internal side of plasma membrane
GO:0031520; plasma membrane of cell tip
GO:0000767; cellular morphogenesis during conjugation
GO:0034613; cellular protein localization
GO:0061161; positive regulation of establishment of bipolar cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17085965; date=20061113 ||| term=localization dependent on microtubules and actin; db_xref=PMID:17085965; date=20061113 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR084C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "rax2" ; product "cell polarity factor Rax2" ;
chromosome1 GeneDB mRNA 1550076 1550683 . + . mRNA SPAC167.06c ; systematic_id "SPAC167.06c" ; colour "8" ; gene "SPAC57A7.02c ||| SPAC167.06c ||| mug143" ; Alias "mug143" ; db_xref "SPD:02/02E07" ; synonym "SPAC57A7.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug143" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2724338 2725867 . + . mRNA SPAPB2B4.07 ; systematic_id "SPAPB2B4.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPAPB2B4.07" ; product "ubiquitin family protein, human UBTD1 homolog" ; note "possibly conserved in human, D. melanogaster and A. thaliana by mulitiple alignment" ;
chromosome1 GeneDB mRNA 1945393 1946298 . - . mRNA SPAC3H1.08c ; db_xref "SPD:42/42H06" ; systematic_id "SPAC3H1.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe SPAC2C4.09; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC3H1.08c" ; product "DUF1640 family protein" ;
chromosome1 GeneDB mRNA 3504068 3505014 . + . mRNA SPAC16E8.02 ; db_xref "SPD:09/09C04" ; systematic_id "SPAC16E8.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL010W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAC16E8.02" ; product "DUF962 family protein" ;
chromosome1 GeneDB mRNA 2645456 2650352 . + . mRNA SPAC4F8.13c ; systematic_id "SPAC4F8.13c" ; colour "2" ; gene "rng2 ||| SPAC4F8.13c" ; db_xref "SPD:30/30H04" ; Alias "rng2" ; GO "; contractile ring
; spindle pole body
GO:0005099; Ras GTPase activator activity
GO:0003779; actin binding
GO:0005516; calmodulin binding
GO:0000915; cytokinesis, contractile ring formation
GO:0033205; cell cycle cytokinesis
GO:0046580; negative regulation of Ras protein signal transduction
GO:0051017; actin filament bundle formation
GO:0071519; actin filament bundle formation involved in actomyosin contractile ring formation
GO:0071520; actin filament bundle convergence involved in actomyosin contractile ring formation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9635188; date=19700101 ||| term=IQ domain; date=19700101 ||| term=calponin homology (CH) domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL242C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=localization dependent on actin; date=20090820 ||| term=phenotype, cytokinesis defects, contractile ring actin, absent; db_xref=PMID:19713940; qualifier=deletion; cv=phenotype; date=20091223 ||| term=phenotype, cytokinesis defects, contractile ring myosin distribution, defective; db_xref=PMID:19713940; cv=phenotype; qualifier=ts; date=20091223" ; primary_name "rng2" ; product "IQGAP" ;
chromosome1 GeneDB mRNA 1090678 1092256 . + . mRNA SPAC1A6.10 ; systematic_id "SPAC1A6.10" ; colour "10" ; gene "SPAC1A6.10 ||| SPAC30D11.15c" ; db_xref "SPD:23/23E06" ; synonym "SPAC30D11.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL027W and YHR003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005739; mitochondrion" ; product "Moeb/ThiF domain" ;
chromosome1 GeneDB mRNA 3871642 3876086 . - . mRNA SPAC1071.10c ; systematic_id "SPAC1071.10c" ; colour "2" ; gene "pma1 ||| SPAC1071.10c" ; Alias "pma1" ; db_xref "SPD:39/39A12" ; GO "GO:0005886; plasma membrane
GO:0008553; hydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0015992; proton transport
GO:0006885; regulation of pH
GO:0005887; integral to plasma membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL008C; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "pma1" ; product "P-type proton ATPase, P3-type Pma1" ; EC_number "3.6.3.6" ;
chromosome1 GeneDB mRNA 204391 206081 . + . mRNA SPAC24B11.05 ; db_xref "SPD:07/07H03" ; systematic_id "SPAC24B11.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL224C and YER037W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0047405; pyrimidine-5'-nucleotide nucleosidase activity
GO:0006206; pyrimidine base metabolism
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008252; nucleotidase activity" ; gene "SPAC24B11.05" ; product "pyrimidine 5'-nucleotidase (predicted)" ;
chromosome1 GeneDB mRNA 1270750 1271720 . + . mRNA SPAPB17E12.02 ; systematic_id "SPAPB17E12.02" ; colour "2" ; gene "yip12 ||| yip1 ||| yip1-b ||| SPAPB17E12.02" ; Alias "yip12" ; synonym "yip1 ||| yip1-b" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0000387; spliceosomal snRNP biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SMN family; date=19700101 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, neurological disorders; date=20091123" ; primary_name "yip12" ; product "SMN family protein Yip12" ;
chromosome1 GeneDB mRNA 3114616 3115442 . - . mRNA SPAC688.03c ; db_xref "SPD:43/43D02" ; systematic_id "SPAC688.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, ammecr1; date=19700101 ||| term=orthologous to S. cerevisiae YOR289W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human AMMECR1 ortholog; date=20100718" ; colour "10" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm" ; gene "SPAC688.03c" ; product "human AMMECR1 homolog" ;
chromosome1 GeneDB mRNA 520915 522676 . + . mRNA SPAC227.14 ; systematic_id "SPAC227.14" ; colour "7" ; gene "SPAC227.14" ; note "uridine kinase PRINTS false positive" ; db_xref "SPD:09/09H04" ; GO "GO:0050262; ribosiylnicotinamide kinase activity
GO:0046495; nicotinamide riboside metabolism
GO:0005737; cytoplasm
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL129W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "nicotinamide riboside kinase (predicted)" ;
chromosome1 GeneDB mRNA 2626428 2628241 . + . mRNA SPAC7D4.06c ; systematic_id "SPAC7D4.06c" ; colour "7" ; gene "alg3 ||| SPAC7D4.06c" ; Alias "alg3" ; db_xref "SPD:19/19D08" ; GO "GO:0000033; alpha-1,3-mannosyltransferase activity
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0005783; endoplasmic reticulum
GO:0004584; dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL082C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "alg3" ; product "dolichol-P-Man dependent alpha(1-3) mannosyltransferase Alg3 (predicted)" ; EC_number "2.4.1.130" ;
chromosome1 GeneDB mRNA 4330986 4333077 . + . mRNA SPAC27F1.08 ; systematic_id "SPAC27F1.08" ; colour "2" ; gene "pdt1 ||| SPAC27F1.08" ; Alias "pdt1" ; db_xref "SPD:25/25C05" ; GO "GO:0071421; manganese ion transmembrane transport
GO:0030026; manganese ion homeostasis
GO:0005384; manganese ion transporter activity
GO:0030176; integral to ER membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOL122C and YHR050W and YLR034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "pdt1" ; product "Nramp family manganese ion transporter" ;
chromosome1 GeneDB mRNA 3377128 3378008 . + . mRNA SPAC8E11.07c ; systematic_id "SPAC8E11.07c" ; colour "2" ; gene "alp31 ||| SPAC8E11.07c" ; Alias "alp31" ; db_xref "SPD:06/06B06" ; GO "GO:0030951; establishment and/or maintenance of microtubule cytoskeleton polarity
GO:0007023; post-chaperonin tubulin folding pathway
GO:0006457; beta-tubulin folding
GO:0048487; beta-tubulin binding
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10978278; date=19700101 ||| term=orthologous to S. cerevisiae YOR265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "alp31" ; product "tubulin specific chaperone cofactor A, Alp31" ;
chromosome1 GeneDB mRNA 251726 254934 . - . mRNA SPAC1639.01c ; systematic_id "SPAC1639.01c" ; colour "7" ; gene "SPAC1639.01c ||| SPAC806.09c" ; db_xref "SPD:19/19F03" ; synonym "SPAC806.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL196C and YCR034W and YLR372W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; GO "GO:0019368; fatty acid elongation, unsaturated fatty acid
GO:0009922; fatty acid elongase activity
GO:0005789; endoplasmic reticulum membrane
GO:0030148; sphingolipid biosynthesis" ; product "GNS1/SUR4 family protein (predicted)" ;
chromosome1 GeneDB mRNA 1423029 1424169 . - . mRNA SPAC3A12.03c ; systematic_id "SPAC3A12.03c" ; colour "7" ; db_xref "SPD:13/13A03" ; Alias "meu34" ; synonym "mug145" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=20100426" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination" ; primary_name "meu34" ; product "ubiquitin-protein ligase E3 Meu34 (predicted)" ;
chromosome1 GeneDB mRNA 3080560 3084667 . - . mRNA SPAC16A10.03c ; db_xref "SPD:47/47A12" ; systematic_id "SPAC16A10.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination
GO:0048278; vesicle docking" ; gene "SPAC16A10.03c" ; product "zinc finger protein Pep5/Vps11-like (predicted)" ;
chromosome1 GeneDB mRNA 814233 815356 . + . mRNA SPAC2G11.04 ; db_xref "SPD:12/12E01" ; systematic_id "SPAC2G11.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC2G11.04" ; product "RNA-binding protein, G-patch type (predicted)" ;
chromosome1 GeneDB mRNA 2726196 2732357 . + . mRNA SPAC6F6.01 ; systematic_id "SPAC6F6.01" ; colour "2" ; gene "cch1 ||| SPAC6F6.01" ; Alias "cch1" ; db_xref "SPD:31/31B08" ; GO "GO:0005887; integral to plasma membrane
GO:0050850; positive regulation of calcium- mediated signaling
GO:0005262; calcium channel activity
GO:0070588; transmembrane calcium ion transport
GO:0032516; positive regulation of phosphoprotein phosphatase activity" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR217W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "cch1" ; product "calcium channel Cch1" ;
chromosome1 GeneDB mRNA 174967 175792 . - . mRNA SPAC13G6.02c ; systematic_id "SPAC13G6.02c" ; colour "2" ; gene "rps101 ||| rps1-1 ||| rps3a-1 ||| SPAC13G6.02c" ; Alias "rps101" ; db_xref "SPD:31/31H08" ; synonym "rps1-1 ||| rps3a-1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR441C and YML063W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; primary_name "rps101" ; product "40S ribosomal protein S3a" ;
chromosome1 GeneDB mRNA 2358137 2359871 . - . mRNA SPAC17G8.10c ; systematic_id "SPAC17G8.10c" ; colour "2" ; gene "dma1 ||| SPAC17G8.10c" ; Alias "dma1" ; db_xref "SPD:10/10B10" ; GO "GO:0007094; mitotic spindle checkpoint
; spindle pole body
GO:0031030; negative regulation of septation initiation signaling
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YNL116W and YHR115C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "dma1" ; product "mitotic spindle checkpoint protein Dma1" ;
chromosome1 GeneDB mRNA 872973 874182 . + . mRNA SPAC23G3.04 ; systematic_id "SPAC23G3.04" ; colour "2" ; gene "ies4 ||| SPAC23G3.04" ; Alias "ies4" ; db_xref "SPD:31/31E12" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR189W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "ies4" ; product "Ino80 complex subunit Ies4" ;
chromosome1 GeneDB mRNA 3868441 3868989 . - . mRNA SPAC1071.07c ; systematic_id "SPAC1071.07c" ; colour "7" ; gene "rps1502 ||| rps15-2 ||| rps15 ||| SPAC1071.07c" ; Alias "rps1502" ; db_xref "SPD:42/42B06" ; synonym "rps15-2 ||| rps15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000056; ribosomal small subunit export from nucleus" ; primary_name "rps1502" ; product "40S ribosomal protein S15 (predicted)" ;
chromosome1 GeneDB mRNA 4480905 4481986 . + . mRNA SPAC17C9.11c ; db_xref "SPD:15/15D07" ; systematic_id "SPAC17C9.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=UBA domain protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC17C9.11c" ; product "zf-C2H2 type zinc finger protein/UBA domain protein" ;
chromosome1 GeneDB mRNA 3119379 3122584 . - . mRNA SPAC688.07c ; db_xref "SPD:30/30A10" ; systematic_id "SPAC688.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC688.07c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1243890 1245706 . + . mRNA SPAC56E4.03 ; db_xref "SPD:44/44F03" ; systematic_id "SPAC56E4.03" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0009072; aromatic amino acid family metabolism
GO:0008793; aromatic-amino-acid transaminase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL202W and YHR137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPAC56E4.03" ; product "aromatic aminotransferase (predicted)" ; EC_number "2.6.1.-" ;
chromosome1 GeneDB mRNA 2480071 2482162 . - . mRNA SPAC19A8.04 ; systematic_id "SPAC19A8.04" ; colour "2" ; db_xref "SPD:27/27A08" ; Alias "erg5" ; GO "GO:0000249; C-22 sterol desaturase activity
GO:0005783; endoplasmic reticulum
GO:0006696; ergosterol biosynthesis
GO:0005515; protein binding
GO:0006623; protein targeting to vacuole
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthesis
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Sre1; db_xref=PMID:15797383; cv=gene_ex; date=20070216 ||| term=orthologous to S. cerevisiae YMR015C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124" ; primary_name "erg5" ; product "C-22 sterol desaturase Erg5" ;
chromosome1 GeneDB mRNA 3510283 3512955 . - . mRNA SPAC16E8.07c ; systematic_id "SPAC16E8.07c" ; colour "7" ; gene "vph1 ||| SPAC16E8.07c" ; Alias "vph1" ; db_xref "SPD:28/28H06" ; GO "GO:0000220; vacuolar proton-transporting ATPase, V0 domain
GO:0005524; ATP binding
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, renal tubular acidosis; date=20061010 ||| term=orthologous to S. cerevisiae YOR270C and YMR054W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vph1" ; product "V-type ATPase V0 subunit a (predicted)" ;
chromosome1 GeneDB mRNA 1470879 1473684 . + . mRNA SPAC9.05 ; systematic_id "SPAC9.05" ; colour "2" ; gene "SPAC9.05 ||| fml1" ; Alias "fml1" ; db_xref "SPD:38/38F02" ; GO "GO:0071821; FANCM-MHF complex
GO:0005634; nucleus
GO:0043140; ATP-dependent 3' to 5' DNA helicase activity
GO:0003690; double-stranded DNA binding
GO:0009378; four-way junction helicase activity
GO:0006281; DNA repair
GO:0033567; DNA replication, Okazaki fragment processing
GO:2000042; negative regulation of double-strand break repair via homologous recombination
; positive regulation of Rad51-dependent gene conversion at stalled replication forks
GO:0031297; replication fork processing
GO:0071932; replication fork reversal
GO:0000732; strand displacement" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YIR002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human FANCM ortholog; db_xref=PMID:20347432; date=20100702 ||| term=disease associated, Fanconi anemia; db_xref=PMID:20347432; date=20100702 ||| term=phenotype, sensitive to MMS; qualifier=deletion; db_xref=PMID:18851838; date=20100712 ||| term=phenotype, sensitive to cisplatin; qualifier=deletion; db_xref=PMID:18851838; date=20100712 ||| term=phenotype, sensitive to DNA damaging agents; qualifier=deletion; db_xref=PMID:18851838; date=20100712" ; primary_name "fml1" ; product "ATP-dependent 3' to 5' DNA helicase, FANCM ortholog Fml1" ;
chromosome1 GeneDB mRNA 3515632 3518692 . + . mRNA SPAC16E8.09 ; systematic_id "SPAC16E8.09" ; colour "2" ; gene "scd1 ||| ral1 ||| SPAC16E8.09" ; Alias "scd1" ; db_xref "SPD:39/39A01" ; synonym "ral1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Shape and Conjugation Deficiency; cv=name_description; db_xref=PMID:7923372; date=20061128 ||| term=name description, RAs Like; cv=name_description; db_xref=PMID:3071741; date=20061128 ||| term=phenotype, viable; cv=phenotype; date=20061128 ||| term=pleckstrin homology domain; cv=protein_family; date=20061128 ||| term=calponin homology (CH) domain; cv=protein_family; db_xref=Pfam:PF06395; date=20061128 ||| term=pathway, Ras1-Scd; cv=pathway; date=19700101 ||| term=octicosapeptide repeat; date=19700101 ||| term=orthologous to S. cerevisiae YAL041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, round cells; qualifier=deletion; cv=phenotype; db_xref=PMID:7923372; date=20090217" ; GO "GO:0071521; Cdc42 GTPase complex
GO:0032153; cell division site
GO:0051286; cell tip
GO:0043332; mating projection tip
GO:0005634; nucleus
GO:0030427; site of polarized growth
GO:0005819; spindle
GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043088; Cdc42 GTPase activity
; regulation of barrier septum formation
GO:0008360; regulation of cell shape
GO:0030100; regulation of endocytosis
GO:0032878; regulation of establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0032887; regulation of spindle organization
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0032488; Cdc42 protein signal tansduction" ; primary_name "scd1" ; product "RhoGEF Scd1" ;
chromosome1 GeneDB mRNA 4671550 4673034 . - . mRNA SPAC144.10c ; systematic_id "SPAC144.10c" ; colour "2" ; gene "gwt1 ||| SPAC144.10c ||| mug59" ; Alias "gwt1" ; db_xref "SPD:21/21D06" ; synonym "mug59" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0005789; endoplasmic reticulum membrane
GO:0032216; glucosaminyl-phosphotidylinositol O- acyltransferase activity
GO:0032216; glucosaminyl-phosphotidylinositol O- acyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL091C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=complementation, functionally complements human PIGW; db_xref=PMID:17072883; date=20101012 ||| term=human PIGW ortholog; db_xref=PMID:17072883; date=20101012" ; primary_name "gwt1" ; product "pig-W" ; EC_number "2.3.1.-" ;
chromosome1 GeneDB mRNA 792561 793826 . - . mRNA SPAC16C9.02c ; db_xref "SPD:16/16E07" ; systematic_id "SPAC16C9.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0017061; S-methyl-5-thioadenosine phosphorylase activity
GO:0019509; methionine salvage
GO:0005737; cytoplasm" ; gene "SPAC16C9.02c" ; product "S-methyl-5-thioadenosine phosphorylase (predicted)" ; EC_number "2.4.2.- ||| 2.4.2.28" ;
chromosome1 GeneDB mRNA 529275 530166 . - . mRNA SPAC227.17c ; db_xref "SPD:02/02E06" ; systematic_id "SPAC227.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR512C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAC227.17c" ; product "conserved protein" ;
chromosome1 GeneDB mRNA 3729787 3730991 . + . mRNA SPAC15E1.08 ; systematic_id "SPAC15E1.08" ; colour "7" ; gene "SPAC15E1.08" ; Alias "naa10" ; db_xref "SPD:18/18G11" ; synonym "ard1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; GO "GO:0005737; cytoplasm
GO:0004596; peptide alpha-N-acetyltransferase activity
GO:0031415; NatA complex
GO:0017196; N-terminal peptidyl-methionine acetylation" ; primary_name "naa10" ; product "NatA N-acetyltransferase complex catalytic subunit Naa10 (predicted)" ;
chromosome1 GeneDB mRNA 1669623 1669964 . - . mRNA SPAC343.20 ; db_xref "SPD:51/51G12" ; systematic_id "SPAC343.20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "6" ; gene "SPAC343.20" ; product "dubious" ;
chromosome1 GeneDB mRNA 1503822 1504864 . - . mRNA SPAC5D6.05 ; systematic_id "SPAC5D6.05" ; colour "2" ; gene "sep11 ||| pmc6 ||| SPAC5D6.05 ||| med18" ; Alias "sep11" ; db_xref "SPD:10/10G05" ; synonym "pmc6 ||| med18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:18310102; cv=phenotype; date=20100406 ||| term=phenotype, conjugation defects; cv=phenotype; evidence=IMP; db_xref=PMID:10392445; qualifier=required; date=20060612 ||| term=orthologous to S. cerevisiae YGR104C; date=19700101 ||| term=phenotype, septation defects; db_xref=PMID:18310102; cv=phenotype; date=20080729 ||| term=phenotype, colony morphology, flocculation; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032569; specific transcription from RNA polymerase II promoter" ; primary_name "sep11" ; product "mediator complex subunit Pmc6" ;
chromosome1 GeneDB mRNA 1803624 1804450 . - . mRNA SPAC1002.04c ; systematic_id "SPAC1002.04c" ; colour "7" ; gene "taf11 ||| SPAC1002.04c" ; Alias "taf11" ; db_xref "SPD:06/06F03" ; GO "GO:0005669; transcription factor TFIID complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YML015C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "taf11" ; product "transcription factor TFIID complex subunit Taf11 (predicted)" ; reserved_name "taf11" ;
chromosome1 GeneDB mRNA 4914318 4915420 . - . mRNA SPAPB8E5.04c ; systematic_id "SPAPB8E5.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL046W; date=19700101 ||| term=disease associated, Niemann- Pick disease; date=20071202 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000328; lumen of vacuole with cell cycle- correlated morphology
GO:0032366; intracellular sterol transport" ; colour "7" ; gene "SPAPB8E5.04c" ; product "Niemann-Pick disease type C2 protein hE1 homolog (predicted)" ;
chromosome1 GeneDB mRNA 4667264 4668748 . - . mRNA SPAC144.07c ; db_xref "SPD:13/13C11" ; systematic_id "SPAC144.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR262W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "10" ; GO "GO:0005524; ATP binding
GO:0005737; cytoplasm
GO:0034087; establishment of mitotic sister chromatid cohesion" ; gene "SPAC144.07c" ; product "conserved ATP binding protein, implicated in sister chroamtid cohesion" ;
chromosome1 GeneDB mRNA 4103942 4104715 . - . mRNA SPAC23A1.15c ; systematic_id "SPAC23A1.15c" ; colour "7" ; gene "SPAC23A1.15c ||| sec20" ; Alias "sec20" ; db_xref "SPD:07/07H05" ; GO "GO:0005484; SNAP receptor activity
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YDR498C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sec20" ; product "SNARE Sec20 (predicted)" ;
chromosome1 GeneDB mRNA 4268924 4270903 . - . mRNA SPAC2C4.06c ; db_xref "SPD:24/24D07" ; systematic_id "SPAC2C4.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure may be incorrect; date=20100805" ; colour "7" ; GO "GO:0008649; rRNA methyltransferase activity
GO:0031167; rRNA methylation
GO:0042254; ribosome biogenesis and assembly" ; gene "SPAC2C4.06c" ; product "rRNA methyltransferase (predicted)" ; note "splicing possibly incorrect" ;
chromosome1 GeneDB mRNA 3851914 3852219 . - . mRNA SPAC4H3.12c ; db_xref "SPD:01/01E07" ; systematic_id "SPAC4H3.12c" ; colour "6" ; gene "SPAC4H3.12c" ; product "dubious" ;
chromosome1 GeneDB mRNA 1586013 1586473 . - . mRNA SPAC23H4.21 ; db_xref "PMID:18488015" ; systematic_id "SPAC23H4.21" ; colour "10" ; controlled_curation "term=orthologous to S. cerevisiae YLR407W; date=20080102 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPAC23H4.21" ; product "conserved protein" ;
chromosome1 GeneDB mRNA 1180258 1181082 . + . mRNA SPAC22A12.13 ; systematic_id "SPAC22A12.13" ; colour "7" ; gene "SPAC22A12.13 ||| mug84" ; Alias "mug84" ; db_xref "SPD:42/42B07" ; GO "GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0017176; phosphatidylinositol N- acetylglucosaminyltransferase activity
GO:0006506; GPI anchor biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR437W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug84" ; product "pig-P subunit (predicted)" ;
chromosome1 GeneDB mRNA 4241885 4243370 . - . mRNA SPAC1F7.09c ; db_xref "SPD:15/15E06" ; systematic_id "SPAC1F7.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR029W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004037; allantoicase activity
GO:0000256; allantoin catabolic process" ; gene "SPAC1F7.09c" ; product "allantoicase (predicted)" ; EC_number "3.5.3.4" ;
chromosome1 GeneDB mRNA 4551851 4553632 . + . mRNA SPAC637.07 ; systematic_id "SPAC637.07" ; colour "2" ; gene "moe1 ||| SPAC637.07" ; Alias "moe1" ; db_xref "SPD:35/35D10" ; GO "GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003743; translation initiation factor activity
GO:0030437; ascospore formation
GO:0071313; cellular response to caffeine
GO:0070196; eIF3 complex assembly
GO:0006461; protein complex assembly
GO:0006413; translational initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11705997; date=20081211 ||| term=phenotype, sensitive to caffeine; qualifier=deletion; cv=phenotype; date=20081211 ||| term=phenotype, microtubule organization defects; qualifier=deletion; cv=phenotype; db_xref=PMID:9892665; date=20090926 ||| term=phenotype, resistance to microtubule depolymerizing drugs; qualifier=deletion; db_xref=PMID:9892665; date=20090926 ||| term=phenotype, spindle assembly abnormal; cv=phenotype; qualifier=deletion; db_xref=PMID:9892665; date=20090926" ; primary_name "moe1" ; product "translation initiation factor eIF3d Moe1" ;
chromosome1 GeneDB mRNA 3685727 3686777 . - . mRNA SPAC15A10.05c ; systematic_id "SPAC15A10.05c" ; colour "7" ; gene "SPAC15A10.05c ||| mug182" ; Alias "mug182" ; db_xref "SPD:13/13F06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL200C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human APOA1BP ortholog; date=20100226" ; GO "GO:0005739; mitochondrion
GO:0042817; pyridoxal metabolic process
GO:0004733; pyridoxamine-phosphate oxidase activity" ; primary_name "mug182" ; product "YjeF family pyridoxamine-phosphate oxidase (predicted)" ;
chromosome1 GeneDB mRNA 926486 927640 . - . mRNA SPAC1687.13c ; systematic_id "SPAC1687.13c" ; colour "2" ; gene "csn5 ||| SPAC1687.13c" ; Alias "csn5" ; db_xref "SPD:16/16E01" ; GO "GO:0008180; signalosome
GO:0010388; cullin deneddylation
GO:0004843; ubiquitin-specific protease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL216C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "csn5" ; product "COP9/signalosome complex subunit Csn5" ;
chromosome1 GeneDB mRNA 1433049 1433375 . - . mRNA SPAC3A12.19 ; db_xref "SPD:52/52B11" ; systematic_id "SPAC3A12.19" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR282W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, new gene; cv=warning; date=20040904" ; colour "7" ; GO "GO:0006412; protein biosynthesis
GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome" ; product "mitochondrial ribosomal protein subunit L27 (predicted)" ;
chromosome1 GeneDB mRNA 1063765 1066900 . + . mRNA SPAC23C4.19 ; systematic_id "SPAC23C4.19" ; colour "2" ; gene "spt5 ||| SPAC23C4.19" ; Alias "spt5" ; db_xref "SPD:47/47F06" ; GO "GO:0034243; regulation of RNA elongation from RNA polymerase II promoter
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0034244; negative regulation of RNA elongation from RNA polymerase II promoter
GO:0032044; DSIF complex
GO:0006397; mRNA processing
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11893740; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=orthologous to S. cerevisiae YML010W; date=19700101 ||| term=modification, phosphorylated; qualifier=in_vitro; cv=pt_mod; evidence=IDA; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; qualifier=in_vitro; cv=pt_mod; evidence=IDA; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Cdk9; qualifier=in_vitro|phosphorylated_by; db_xref=PMID:19328067; date=20100923 ||| term=target of Msc6; qualifier=in_vitro|phosphorylated_by; db_xref=PMID:19328067; date=20100923" ; primary_name "spt5" ; product "transcription elongation factor Spt5" ;
chromosome1 GeneDB mRNA 402886 403767 . + . mRNA SPAC31A2.08 ; systematic_id "SPAC31A2.08" ; colour "7" ; gene "mrp20 ||| SPAC31A2.08" ; Alias "mrp20" ; db_xref "SPD:04/04E06" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR405W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrp20" ; product "mitochondrial ribosomal protein subunit L23 (predicted)" ;
chromosome1 GeneDB mRNA 5302349 5305648 . - . mRNA SPAC11E3.11c ; db_xref "SPD:52/52B08" ; systematic_id "SPAC11E3.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YBL060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0005085; guanyl-nucleotide exchange factor activity" ; gene "SPAC11E3.11c" ; product "guanyl-nucleotide exchange factor (predicted)" ;
chromosome1 GeneDB mRNA 3101297 3102516 . - . mRNA SPAC589.05c ; db_xref "SPD:50/50D11" ; systematic_id "SPAC589.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human c9orf64 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC589.05c" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB mRNA 2833891 2834988 . - . mRNA SPAC3F10.10c ; systematic_id "SPAC3F10.10c" ; colour "2" ; gene "map3 ||| SPAC3F10.10c" ; Alias "map3" ; db_xref "SPD:17/17B12" ; GO "GO:0004932; mating-type factor pheromone receptor activity
GO:0005886; plasma membrane
GO:0007186; G-protein coupled receptor protein signaling pathway
GO:0045836; positive regulation of meiosis
GO:0032005; signal transduction during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL178C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "map3" ; product "pheromone M-factor receptor Map3" ;
chromosome1 GeneDB mRNA 4119733 4121824 . + . mRNA SPAC26H5.03 ; systematic_id "SPAC26H5.03" ; colour "2" ; gene "cac2 ||| SPAC26H5.03" ; Alias "pcf2" ; db_xref "SPD:35/35H06" ; synonym "cac2" ; GO "GO:0033186; CAF-1 complex
GO:0016585; chromatin remodeling complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0006335; DNA replication-dependent nucleosome assembly
GO:0030437; ascospore formation
GO:0070829; heterochromatin maintenance
GO:0035067; negative regulation of histone acetylation
GO:0006334; nucleosome assembly
GO:0090053; positive regulation of chromatin silencing at centromere
GO:0090055; positive regulation of chromatin silencing at mating type cassette
GO:0051574; positive regulation of histone H3-K9 methylation
GO:0034504; protein localization in nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YML102W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CAF1p60 ortholog; db_xref=PMID:18761674; date=20090723 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18761674; date=20090723 ||| term=misc functional group, histone chaperone; db_xref=PMID:18761674; cv=m_f_g; date=20090723 ||| term=name description, Pombe CAF-1 First subunit; db_xref=PMID:18761674; date=20090723 ||| term=phenotype, sporulation defects; qualifier=deletion; db_xref=PMID:18761674; cv=phenotype; date=20090723" ; primary_name "pcf2" ; product "CAF assembly factor (CAF-1) complex subunit B, Pcf2" ;
chromosome1 GeneDB mRNA 5292795 5294344 . + . mRNA SPAC11E3.06 ; systematic_id "SPAC11E3.06" ; colour "2" ; gene "map1 ||| SPAC11E3.06" ; Alias "map1" ; db_xref "SPD:52/52B03" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0003677; DNA binding
GO:0007532; regulation of transcription, mating- type specific
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is mam2; date=19700101 ||| term=orthologous to S. cerevisiae YMR043W and YMR042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "map1" ; product "MADS-box transcription factor Map1" ;
chromosome1 GeneDB mRNA 656326 660177 . - . mRNA SPAC1D4.11c ; systematic_id "SPAC1D4.11c" ; colour "2" ; db_xref "SPD:27/27G02" ; Alias "lkh1" ; synonym "kic1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11741326; date=19700101 ||| term=CLK/STY/LAMMEr subfamily; db_xref=PMID:12565823; date=19700101 ||| term=target is Atf1; qualifier=indirect; db_xref=PMID:14623292; date=19700101 ||| term=orthologous to S. cerevisiae YLL019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:12565823; date=20100712 ||| term=warning, gene structure updated; db_xref=PMID:12565823; date=20061204" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0023034; intracellular signaling cascade
GO:0060258; negative regulation of filamentous growth
GO:0060257; negative regulation of flocculation
GO:0006468; protein amino acid phosphorylation
GO:0032955; regulation of barrier septum formation
GO:0010590; regulation of cell separation during cytokinesis
GO:0060237; regulation of fungal-type cell wall organization and biogenesis
GO:0034599; cellular response to oxidative stress
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "lkh1" ; product "dual specificity protein kinase Lkh1" ; EC_number "2.7.11.1 ||| 2.7.10.1" ;
chromosome1 GeneDB mRNA 5250647 5252241 . - . mRNA SPAC14C4.12c ; systematic_id "SPAC14C4.12c" ; colour "2" ; gene "laf1 ||| SPAC14C4.12c" ; Alias "laf1" ; db_xref "SPD:12/12B12" ; GO "GO:0006338; chromatin remodeling
GO:0006355; regulation of transcription, DNA- dependent
GO:0003677; DNA binding
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL034C and YOR338W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "laf1" ; product "clr6 L associated factor 1 Laf1" ;
chromosome1 GeneDB mRNA 947964 948581 . - . mRNA SPAC222.03c ; systematic_id "SPAC222.03c" ; colour "7" ; gene "tim10 ||| SPAC222.03c" ; Alias "tim10" ; db_xref "SPD:06/06H11" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0005758; mitochondrial intermembrane space
GO:0042719; mitochondrial intermembrane space protein transporter complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-Tim10/DDP type; date=19700101 ||| term=orthologous to S. cerevisiae YHR005C-A and YBR091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tim10" ; product "Tim9-Tim10 complex subunit Tim10 (predicted)" ;
chromosome1 GeneDB mRNA 1578314 1579610 . + . mRNA SPAC23H4.16c ; db_xref "SPD:19/19E05" ; systematic_id "SPAC23H4.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "8" ; gene "SPAC23H4.16c" ; product "sequence orphan" ; note "possibly broadly conserved (to human), possible conserved motif QAFCI at C term" ;
chromosome1 GeneDB mRNA 732831 736515 . + . mRNA SPAC22G7.04 ; systematic_id "SPAC22G7.04" ; colour "7" ; gene "SPAC22G7.04 ||| ubp13" ; Alias "ubp13" ; db_xref "SPD:48/48D12" ; synonym "pan2" ; GO "GO:0031251; PAN complex
GO:0005737; cytoplasm
GO:0004535; poly(A)-specific ribonuclease activity
GO:0006397; mRNA processing
GO:0006301; postreplication repair
GO:0004843; ubiquitin-specific protease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human USP52 ortholog; date=20101020 ||| term=warning, gene structure updated; date=20101020" ; primary_name "ubp13" ; product "ubiquitin C-terminal hydrolase, poly(A)-specific ribonuclease complex subunit Pan2 (predicted)" ; reserved_name "ubp13" ;
chromosome1 GeneDB mRNA 4168212 4170062 . + . mRNA SPAC25B8.08 ; db_xref "SPD:36/36C03" ; systematic_id "SPAC25B8.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR089W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC25B8.08" ; product "conserved fungal protein" ; note "possibly conserved in metazoa also" ;
chromosome1 GeneDB mRNA 505902 506355 . + . mRNA SPAC227.05 ; db_xref "SPD:02/02F01" ; systematic_id "SPAC227.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL153C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex" ; gene "SPAC227.05" ; product "prefoldin subunit 4 (predicted)" ;
chromosome1 GeneDB mRNA 1551120 1553266 . - . mRNA SPAC167.05 ; systematic_id "SPAC167.05" ; colour "10" ; gene "SPAC57A7.01 ||| SPAC167.05" ; Alias "SPAC57A7.01" ; db_xref "SPD:36/36E04" ; synonym "SPAC57A7.01" ; GO "GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "SPAC57A7.01" ; product "Usp (universal stress protein) family protein, implicated in meiotic chromosome segregation" ;
chromosome1 GeneDB mRNA 4004286 4005508 . + . mRNA SPAC27E2.02 ; db_xref "SPD:14/14F12" ; systematic_id "SPAC27E2.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RWD domain; date=19700101 ||| term=orthologous to S. cerevisiae YCR059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human IMPACT ortholog; date=20100226" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0045182; translation regulator activity
GO:0001932; regulation of protein amino acid phosphorylation
GO:0043555; regulation of translation in response to stress" ; gene "SPAC27E2.02" ; product "IMPACT homolog, translational regulator (predicted)" ;
chromosome1 GeneDB mRNA 1593363 1594516 . - . mRNA SPAC23H4.08 ; db_xref "SPD:16/16C11" ; systematic_id "SPAC23H4.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL115C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006366; transcription from RNA polymerase II promoter
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0032569; gene specific transcription from RNA polymerase II promoter
GO:0032568; general transcription from RNA polymerase II promoter
GO:0006338; chromatin remodelling" ; gene "SPAC23H4.08" ; product "RNA polymerase II associated protein (predicted)" ;
chromosome1 GeneDB mRNA 1152068 1152598 . + . mRNA SPAC56F8.15 ; db_xref "SPD:05/05D02" ; systematic_id "SPAC56F8.15" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPAC56F8.15" ; product "dubious" ;
chromosome1 GeneDB mRNA 3416618 3424974 . + . mRNA SPAC3H5.09c ; db_xref "SPD:51/51F02" ; systematic_id "SPAC3H5.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR454W and YPR117W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human KIAA0100 ortholog; date=20100718" ; GO "GO:0005739; mitochondrion" ; colour "10" ; gene "SPAC3H5.09c" ; product "conserved eukaryotic mitochondrial protein (predicted)" ;
chromosome1 GeneDB mRNA 4760104 4761088 . - . mRNA SPAC1782.02c ; db_xref "SPD:06/06D03" ; systematic_id "SPAC1782.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR118C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC1782.02c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 5056658 5058804 . + . mRNA SPAC22E12.19 ; systematic_id "SPAC22E12.19" ; colour "2" ; gene "SPAC2E12.01 ||| SPAC22E12.19 ||| snt1" ; Alias "snt1" ; db_xref "SPD:27/27C07" ; synonym "SPAC2E12.01" ; GO "GO:0034967; Set3 complex
GO:0003677; DNA binding
GO:0016575; histone deacetylation
GO:0006338; chromatin remodeling
GO:0070210; Rpd3L-Expanded" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=SANT subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YCR033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snt1" ; product "Set3 complex subunit Snt1" ;
chromosome1 GeneDB mRNA 4134378 4135902 . - . mRNA SPAC26H5.08c ; systematic_id "SPAC26H5.08c" ; colour "7" ; gene "bgl2 ||| SPAC26H5.08c" ; Alias "bgl2" ; db_xref "SPD:13/13G01" ; GO "GO:0009277; cell wall (sensu Fungi)
GO:0004338; beta-glucosidase activity
GO:0070879; fungal-type cell wall beta-glucan metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR282C; date=19700101 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "bgl2" ; product "glucan beta-glucosidase Bgl2 (predicted)" ; EC_number "3.2.1.58" ;
chromosome1 GeneDB mRNA 3099047 3100030 . - . mRNA SPAC589.03c ; db_xref "SPD:41/41D06" ; systematic_id "SPAC589.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC589.03c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 905092 906355 . - . mRNA SPAC1687.03c ; systematic_id "SPAC1687.03c" ; colour "7" ; gene "rfc4 ||| SPAC1687.03c" ; Alias "rfc4" ; db_xref "SPD:22/22B10" ; GO "GO:0031390; Ctf18 RFC-like complex
GO:0005663; DNA replication factor C complex
GO:0031391; Elg1 RFC-like complex
GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0003689; DNA clamp loader activity
GO:0006272; leading strand elongation
GO:0043596; nuclear relication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL094C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=AAA family ATPase; date=20081222" ; primary_name "rfc4" ; product "DNA replication factor C complex subunit Rfc4 (predicted)" ;
chromosome1 GeneDB mRNA 177001 180028 . + . mRNA SPAC13G6.03 ; systematic_id "SPAC13G6.03" ; colour "7" ; gene "gpi7 ||| SPAC13G6.03" ; Alias "gpi7" ; db_xref "SPD:28/28B09" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0006506; GPI anchor biosynthesis
GO:0051377; mannose-ethanolamine phosphotransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL062W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gpi7" ; product "GPI anchor biosynthesis protein Gpi7 (predicted)" ; reserved_name "gpi7" ;
chromosome1 GeneDB mRNA 2135951 2138028 . + . mRNA SPAC23C11.03 ; db_xref "SPD:36/36D05" ; systematic_id "SPAC23C11.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030532; small nuclear ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0006364; 35S primary transcript processing" ; gene "SPAC23C11.03" ; product "U3 snoRNP-associated protein Mpp1 (predicted)" ;
chromosome1 GeneDB mRNA 374307 377164 . - . mRNA SPAC630.14c ; systematic_id "SPAC630.14c" ; colour "2" ; gene "tup12 ||| SPAC630.14c" ; note "a number of genes are differentially affected by mutations in tup11 and tup12 in cellular response to cation stress (PMID 15632072)" ; Alias "tup12" ; db_xref "SPD:28/28H10" ; GO "GO:0042393; histone binding
GO:0006342; chromatin silencing
GO:0045014; negative regulation of transcription by glucose
GO:0003714; transcription corepressor activity
GO:0003714; transcription corepressor activity
GO:0000790; nuclear chromatin
GO:0043156; chromatin remodeling in response to cation stress
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005634; nucleus
GO:0071473; cellular response to cation stress
GO:0043156; chromatin remodeling in response to cation stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCR084C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "tup12" ; product "transcriptional corepressor Tup12" ;
chromosome1 GeneDB mRNA 5334103 5334807 . + . mRNA SPAP8A3.10 ; systematic_id "SPAP8A3.10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR193C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0006627; mitochondrial protein processing during import
GO:0031314; extrinsic to mitochondrial inner membrane" ; gene "SPAP8A3.10" ; product "mitochondrial intermembrane space protein sorting protein (predicted)" ;
chromosome1 GeneDB mRNA 4061377 4064952 . - . mRNA SPAC19G12.10c ; systematic_id "SPAC19G12.10c" ; colour "2" ; gene "cpy1 ||| pcy1 ||| SPAC19G12.10c" ; Alias "cpy1" ; db_xref "SPD:29/29G12" ; synonym "pcy1" ; GO "GO:0005737; cytoplasm
GO:0000324; vacuole (sensu Fungi)
GO:0046982; protein heterodimerization activity
GO:0004185; serine carboxypeptidase activity
GO:0007039; vacuolar protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, galactosialidosis; date=20060920 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=modification, glycosylated; cv=pt_mod; db_xref=PMID:9209031; date=19700101 ||| term=protein sequence feature, vacuolar sorting signal; db_xref=PMID:9209031; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR297W and YBR139W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "cpy1" ; product "vacuolar carboxypeptidase Y" ; EC_number "3.4.16.5" ;
chromosome1 GeneDB mRNA 3971942 3973234 . - . mRNA SPAC11G7.06c ; systematic_id "SPAC11G7.06c" ; colour "12" ; gene "SPAC11G7.06c ||| mug132" ; db_xref "SPD:22/22D10" ; Alias "mug132" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; primary_name "mug132" ; product "S. pombe specific UPF0300 family protein 3" ;
chromosome1 GeneDB mRNA 3329362 3331144 . + . mRNA SPAC2E1P5.05 ; db_xref "SPD:45/45B11" ; systematic_id "SPAC2E1P5.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex" ; gene "SPAC2E1P5.05" ; product "U3 snoRNP-associated protein Rrp9 (predicted)" ;
chromosome1 GeneDB mRNA 3088867 3089362 . - . mRNA SPAC16A10.05c ; systematic_id "SPAC16A10.05c" ; colour "2" ; gene "dad1 ||| SPAC16A10.05c" ; Alias "dad1" ; db_xref "SPD:01/01B11" ; GO "GO:0007052; mitotic spindle organization and biogenesis
GO:0042729; DASH complex
GO:0031134; sister chromatid biorientation
GO:0005876; spindle microtubule
GO:0005816; spindle pole body
GO:0031617; NMS complex
GO:0031511; Mis6-Sim4 complex
GO:0034613; cellular protein localization
GO:0000779; condensed chromosome, pericentric region" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16079914; date=19700101 ||| term=orthologous to S. cerevisiae YDR016C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "dad1" ; product "DASH complex subunit Dad1" ;
chromosome1 GeneDB mRNA 2066442 2067904 . - . mRNA SPAC3C7.03c ; systematic_id "SPAC3C7.03c" ; colour "2" ; gene "rhp55 ||| SPAC3C7.03c" ; Alias "rhp55" ; db_xref "SPD:40/40C10" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0008094; DNA-dependent ATPase activity
GO:0033170; DNA-protein loading ATPase activity
GO:0046982; protein heterodimerization activity
GO:0000730; DNA recombinase assembly
GO:0000724; double-strand break repair via homologous recombination
GO:0006311; meiotic gene conversion
GO:0000709; meiotic joint molecule formation
GO:0007131; meiotic recombination
GO:0006997; nuclear organization and biogenesis
GO:0000725; recombinational repair
GO:0006974; response to DNA damage stimulus
GO:0042148; strand invasion
GO:0033062; Rhp55-Rhp57 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10430583; date=20100705 ||| term=phenotype, nuclear morphology defects; db_xref=PMID:10430583; date=20100705 ||| term=phenotype, DNA content increased; db_xref=PMID:10430583; date=20100705 ||| term=phenotype, sensitive to MMS; db_xref=PMID:10430583; date=20100705 ||| term=phenotype, sensitive to IR; db_xref=PMID:10430583; date=20100705 ||| term=phenotype, sensitive to UV; db_xref=PMID:10430583; date=20100705 ||| term=RecA family; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=helix-hairpin-helix; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDR076W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "rhp55" ; product "RecA family ATPase Rhp55" ;
chromosome1 GeneDB mRNA 5220220 5221383 . - . mRNA SPAC19D5.06c ; systematic_id "SPAC19D5.06c" ; colour "2" ; gene "din1 ||| SPAC19D5.06c" ; Alias "din1" ; db_xref "SPD:16/16C03" ; synonym "rai1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL246C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human DOM3Z ortholog; date=20100902" ; GO "GO:0005634; nucleus
GO:0006364; rRNA processing
GO:0030846; transcription termination from Pol II promoter, RNA polymerase(A) coupled" ; primary_name "din1" ; product "Dhp1p-interacting protein Din1" ;
chromosome1 GeneDB mRNA 3900130 3907050 . - . mRNA SPAC926.09c ; systematic_id "SPAC926.09c" ; colour "2" ; gene "fas1 ||| SPAC926.09c" ; Alias "fas1" ; db_xref "SPD:34/34C03" ; GO "GO:0004321; fatty-acyl-CoA synthase activity
GO:0004318; enoyl-[acyl-carrier-protein] reductase (NADH) activity
GO:0004317; 3-hydroxypalmitoyl-[acyl-carrier- protein] dehydratase activity
GO:0004314; [acyl-carrier-protein] S- malonyltransferase activity
GO:0004313; [acyl-carrier-protein] S- acetyltransferase activity
GO:0006633; fatty acid biosynthesis
GO:0005835; fatty acid synthase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL182W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "fas1" ; product "fatty acid synthase beta subunit Fas1" ; EC_number "3.1.2.14 ||| 2.3.1.86 ||| 4.2.1.61 ||| 1.3.1.9 ||| 2.3.1.38 ||| 2.3.1.39" ;
chromosome1 GeneDB mRNA 2688135 2689072 . + . mRNA SPAC644.08 ; db_xref "SPD:08/08C07" ; systematic_id "SPAC644.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL038W; date=19700101 ||| term=haloacid dehalogenase-like hydrolase; date=20080529 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0019509; methionine salvage" ; gene "SPAC644.08" ; product "methionine salvage haloacid dehalogenase-like hydrolase (predicted)" ;
chromosome1 GeneDB mRNA 1823972 1824277 . + . mRNA SPAC1002.20 ; db_xref "SPD:51/51F11" ; systematic_id "SPAC1002.20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1002.20" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1435073 1435896 . + . mRNA SPAC3A12.08 ; db_xref "SPD:42/42F05" ; systematic_id "SPAC3A12.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER182W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC3A12.08" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 4612095 4613031 . + . mRNA SPAC1093.02 ; db_xref "SPD:08/08B05" ; systematic_id "SPAC1093.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004733; pyridoxamine-phosphate oxidase activity
GO:0042818; pyridoxamine metabolic process" ; gene "SPAC1093.02" ; product "pyridoxamine 5'-phosphate oxidase (predicted)" ; EC_number "1.4.3.5" ;
chromosome1 GeneDB mRNA 3843366 3844124 . + . mRNA SPAC4H3.09 ; db_xref "SPD:06/06G08" ; systematic_id "SPAC4H3.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL192C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0006633; fatty acid biosynthesis
GO:0005759; mitochondrial matrix
GO:0048037; cofactor binding" ; gene "SPAC4H3.09" ; product "mitochondrial type II fatty acid synthase component (predicted)" ;
chromosome1 GeneDB mRNA 801141 804111 . - . mRNA SPAC16C9.06c ; systematic_id "SPAC16C9.06c" ; colour "2" ; gene "upf1 ||| SPAC16C9.06c" ; Alias "upf1" ; db_xref "SPD:47/47C03" ; GO "GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0005737; cytoplasm
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding
GO:0006415; translational termination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR080C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16914721; date=20090110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "upf1" ; product "ATP-dependent RNA helicase Upf1" ;
chromosome1 GeneDB mRNA 5535198 5536280 . + . mRNA SPAC186.03 ; db_xref "SPD:16/16H02" ; systematic_id "SPAC186.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR155C and YLR157C and YLR158C and YLR160C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006530; asparagine catabolic process
GO:0009986; cell surface" ; colour "7" ; gene "SPAC186.03" ; product "L-asparaginase (predicted)" ;
chromosome1 GeneDB mRNA 1863363 1863762 . + . mRNA SPAPB1A10.03 ; Alias "nxt1" ; systematic_id "SPAPB1A10.03" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human NXT1 and NXT2 ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14963046; date=19700101 ||| term=orthologous to S. cerevisiae YKL186C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081116 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=warning, gene structure updated; cv=warning; date=20100317" ; GO "GO:0046982; protein heterodimerization activity
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0000054; ribosome export from nucleus
GO:0042272; nuclear RNA export factor complex" ; gene "nxt1 ||| SPAPB1A10.03" ; primary_name "nxt1" ; product "mRNA export receptor Nxt1" ;
chromosome1 GeneDB mRNA 2189396 2190826 . - . mRNA SPAC1783.02c ; systematic_id "SPAC1783.02c" ; colour "7" ; gene "vps66 ||| SPAC1783.02c" ; Alias "vps66" ; db_xref "SPD:18/18E02" ; GO "GO:0008415; acyltransferase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPR139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps66" ; product "acyltransferase (predicted)" ; EC_number "2.3.1.-" ;
chromosome1 GeneDB mRNA 2210903 2214310 . - . mRNA SPAC18G6.02c ; systematic_id "SPAC18G6.02c" ; colour "2" ; gene "chp1 ||| SPAC18G6.02c" ; db_xref "SPD:47/47D04" ; Alias "chp1" ; GO "GO:0030958; RITS complex
GO:0005721; centric heterochromatin
GO:0000775; chromosome, pericentric region
GO:0031934; mating-type region heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0031060; regulation of histone methylation
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization to chromosome, centromeric region
GO:0031048; small RNA-mediated chromatin silencing
GO:0031048; small RNA-mediated chromatin silencing
; nucleosomal histone binding" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=chromodomain protein; date=19700101 ||| term=rrm RNA recognition motif; db_xref=PMID:15743828; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, CHromodomain Protein; cv=name_description; date=20100126 ||| term=phenotype, siRNAs homologous to outer repeats undetectable; cv=phenotype; date=20100318" ; primary_name "chp1" ; product "chromodomain protein Chp1" ;
chromosome1 GeneDB mRNA 3796280 3798478 . - . mRNA SPAC1556.02c ; systematic_id "SPAC1556.02c" ; colour "7" ; gene "sdh1 ||| SPAC1556.02c" ; Alias "sdh1" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00190; ||| SPD:37/37C02" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006121; mitochondrial electron transport, succinate to ubiquinone
GO:0006105; succinate metabolism
GO:0008177; succinate dehydrogenase (ubiquinone) activity
GO:0005749; respiratory chain complex II (sensu Eukaryota)
GO:0050660; FAD binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Leigh syndrome; date=20060920 ||| term=disease associated, neurological disorders; date=20060920 ||| term=orthologous to S. cerevisiae YKL148C and YJL045W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sdh1" ; product "succinate dehydrogenase Sdh1 (predicted)" ; EC_number "1.3.5.1" ;
chromosome1 GeneDB mRNA 2305172 2307263 . + . mRNA SPAC13G7.05 ; systematic_id "SPAC13G7.05" ; colour "7" ; gene "SPAC13G7.05" ; Alias "are1" ; db_xref "SPD:45/45D03" ; GO "GO:0005783; endoplasmic reticulum
GO:0034737; ergosterol O-acyltransferase activity
GO:0006696; ergosterol metabolic process
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR048W and YNR019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "are1" ; product "acyl-coA-sterol acyltransferase Are1 (predicted)" ; reserved_name "are1" ; EC_number "2.3.1.26" ;
chromosome1 GeneDB mRNA 3942128 3942730 . - . mRNA SPAC2F3.18c ; db_xref "SPD:51/51G08" ; systematic_id "SPAC2F3.18c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR170W-B; date=20080107 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=human RNASEK ortholog; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; GO "GO:0009303; rRNA transcription
GO:0004521; endoribonuclease activity" ; gene "SPAC2F3.18c" ; product "ribonuclease kappa ortholog (predicted)" ;
chromosome1 GeneDB mRNA 4012418 4012891 . - . mRNA SPAC27E2.14 ; db_xref "PMID:18488015" ; systematic_id "SPAC27E2.14" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC27E2.14" ; product "sequence orphan" ; note "intron from Solexa transread data" ;
chromosome1 GeneDB mRNA 4373039 4374987 . - . mRNA SPAC23D3.14c ; systematic_id "SPAC23D3.14c" ; colour "7" ; gene "aah2 ||| SPAC23D3.14c" ; Alias "aah2" ; db_xref "SPD:37/37A12" ; GO "GO:0009986; cell surface
GO:0009897; external side of plasma membrane
GO:0004556; alpha-amylase activity
GO:0008360; regulation of cell shape
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=modification, glycosylated; qualifier=N-linked; cv=pt_mod; date=20060611 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060611 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "aah2" ; product "alpha-amylase homolog Aah2 (predicted)" ; EC_number "3.2.1.1" ;
chromosome1 GeneDB mRNA 2708097 2709309 . + . mRNA SPAPB2B4.02 ; Alias "grx5" ; systematic_id "SPAPB2B4.02" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15796926; date=19700101 ||| term=orthologous to S. cerevisiae YPL059W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111" ; GO "GO:0005759; mitochondrial matrix
GO:0005739; mitochondrion
GO:0008794; arsenate reductase (glutaredoxin) activity
GO:0015035; protein disulfide oxidoreductase activity
GO:0016226; iron-sulfur cluster assembly
GO:0071473; cellular response to cation stress
GO:0051409; response to nitrosative stress
GO:0006970; response to osmotic stress
GO:0034599; cellular response to oxidative stress
GO:0019430; removal of superoxide radicals" ; gene "grx5 ||| SPAPB2B4.02" ; primary_name "grx5" ; product "monothiol glutaredoxin Grx5" ;
chromosome1 GeneDB mRNA 1034296 1035992 . + . mRNA SPAC23C4.03 ; systematic_id "SPAC23C4.03" ; colour "2" ; gene "SPAC23C4.03" ; Alias "hrk1" ; db_xref "SPD:23/23F02" ; GO "GO:0031934; mating-type region heterochromatin
GO:0031618; nuclear centromeric heterochromatin
GO:0005634; nucleus
GO:0031933; telomeric heterochromatin
GO:0005524; ATP binding
GO:0072354; histone kinase activity (H3-T3) specific
GO:0005515; protein binding
GO:0005515; protein binding
GO:0072356; chromosome passenger complex localization to kinetochore
GO:0072355; histone H3-T3 phosphorylation
GO:0000070; mitotic sister chromatid segregation
GO:0034501; protein localization to kinetochore" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL021W and YBL009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; qualifier=predicted; evidence=ISS; cv=pt_mod; date=20091211 ||| term=human GSG2 ortholog; date=20100704 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902 ||| term=target is Hht1; qualifier=phosphorylates; db_xref=PMID:20929775; date=20101115 ||| term=target is Hht2; qualifier=phosphorylates; db_xref=PMID:20929775; date=20101115 ||| term=target is Hht3; qualifier=phosphorylates; db_xref=PMID:20929775; date=20101115" ; primary_name "hrk1" ; product "haspin related kinase Hrk1" ;
chromosome1 GeneDB mRNA 563926 565034 . + . mRNA SPAC2F7.15 ; systematic_id "SPAC2F7.15" ; colour "7" ; gene "SPAC2F7.15 ||| rsm24" ; Alias "rsm24" ; db_xref "SPD:11/11E11" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR175C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rsm24" ; product "mitochondrial ribosomal protein subunit S24 (predicted)" ;
chromosome1 GeneDB mRNA 4306719 4309976 . - . mRNA SPAC25G10.07c ; systematic_id "SPAC25G10.07c" ; colour "2" ; gene "cut7 ||| SPAC25G10.07c" ; Alias "cut7" ; db_xref "SPD:30/30C06" ; GO "GO:0005875; microtubule associated complex
GO:0005876; spindle microtubule
GO:0005816; spindle pole body
GO:0003777; microtubule motor activity
GO:0008574; plus-end directed microtubule motor activity
GO:0005515; protein binding
GO:0007018; microtubule-based movement
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=kinesin BimC subfamily; db_xref=PMID:9490630; date=19700101 ||| term=orthologous to S. cerevisiae YBL063W and YEL061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:9490630; date=20100826 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201" ; primary_name "cut7" ; product "kinesin-like protein Cut7" ;
chromosome1 GeneDB mRNA 4503472 4506879 . - . mRNA SPAC1851.04c ; systematic_id "SPAC1851.04c" ; colour "2" ; gene "SPAC1851.04c ||| SPAC27D7.01c" ; Alias "ric1" ; db_xref "SPD:47/47H09" ; synonym "SPAC27D7.01c" ; GO "GO:0000139; Golgi membrane
GO:0006886; intracellular protein transport
; retrograde transport, endosome to Golgi
GO:0032045; guanyl-nucleotide exchange factor complex
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YLR039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20101005 ||| term=phenotype, sensitive to valproic acid; allele=vas3-1; db_xref=PMID:20623139; date=20101005 ||| term=human KIAA1432 ortholog; date=20101005 ||| term=target is Ryh1; db_xref=PMID:20623139; date=20101005 ||| term=target of Ppk19; db_xref=PMID:20623139; date=20101005" ; primary_name "ric1" ; product "Ypt/Rab-specific guanyl-nucleotide exchange factor (GEF) subunit Ric1" ;
chromosome1 GeneDB mRNA 1032085 1034167 . + . mRNA SPAC23C4.02 ; systematic_id "SPAC23C4.02" ; colour "2" ; gene "crn1 ||| SPAC23C4.02" ; db_xref "SPD:46/46C04" ; Alias "crn1" ; GO "GO:0030036; actin cytoskeleton organization and biogenesis
GO:0003779; actin binding
GO:0030479; actin cortical patch
GO:0030041; actin filament polymerization
GO:0051017; actin filament bundle formation
GO:0005826; contractile ring" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=coronin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11231572; date=19700101 ||| term=orthologous to S. cerevisiae YLR429W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "crn1" ; product "actin binding protein, coronin Crn1" ;
chromosome1 GeneDB mRNA 1490129 1492105 . - . mRNA SPAC5D6.13 ; systematic_id "SPAC5D6.13" ; colour "7" ; gene "SPAPJ735.02c ||| SPAC5D6.13" ; Alias "SPAPJ735.02c" ; db_xref "SPD:43/43F11" ; synonym "SPAPJ735.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR372C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human GOLPH3 ortholog; date=20090817 ||| term=disease associated, cancer; date=20090817" ; GO "GO:0005794; Golgi apparatus
GO:0030968; endoplasmic reticulum unfolded protein response
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER" ; primary_name "SPAPJ735.02c" ; product "Golgi phosphoprotein 3 family (predicted)" ;
chromosome1 GeneDB mRNA 3654213 3654875 . + . mRNA SPAC8C9.07 ; db_xref "SPD:03/03F08" ; systematic_id "SPAC8C9.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR068W; date=19700101 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Eukaryotes only; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820 ||| term=human CCDC59 ortholog; date=20100820" ; colour "7" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005634; nucleus
GO:0005730; nucleolus" ; gene "SPAC8C9.07" ; product "rRNA processing protein Fyv7 (predicted)" ;
chromosome1 GeneDB mRNA 4929854 4931150 . - . mRNA SPAC1B3.03c ; systematic_id "SPAC1B3.03c" ; colour "2" ; gene "wis2 ||| cyp5 ||| SPAC1B3.03c" ; Alias "wis2" ; db_xref "SPD:16/16E05" ; synonym "cyp5" ; GO "GO:0007088; regulation of mitosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=gene expression, expression induced by heat shock; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YLR216C and YJR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "wis2" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Wis2" ; EC_number "5.2.1.8" ;
chromosome1 GeneDB mRNA 4403918 4405936 . + . mRNA SPAC29E6.02 ; systematic_id "SPAC29E6.02" ; colour "7" ; gene "prp3 ||| SPAC30.06 ||| SPAC29E6.02" ; Alias "prp3" ; db_xref "SPD:26/26B11" ; synonym "SPAC30.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR473C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "prp3" ; product "U4/U6 x U5 tri-snRNP complex subunit Prp3 (predicted)" ;
chromosome1 GeneDB mRNA 1973666 1974073 . - . mRNA SPAC9G1.03c ; systematic_id "SPAC9G1.03c" ; colour "7" ; gene "rpl3001 ||| rpl30-1 ||| rpl30 ||| SPAC9G1.03c" ; Alias "rpl3001" ; db_xref "SPD:02/02H06" ; synonym "rpl30-1 ||| rpl30" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0006364; rRNA processing" ; primary_name "rpl3001" ; product "60S ribosomal protein L30 (predicted)" ;
chromosome1 GeneDB mRNA 691472 692077 . + . mRNA SPAC22F3.07c ; systematic_id "SPAC22F3.07c" ; colour "7" ; gene "atp20 ||| SPAC22F3.07c" ; Alias "atp20" ; db_xref "SPD:04/04A07" ; GO "GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0005198; structural molecule activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR020W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp20" ; product "F0-ATPase subunit G (predicted)" ;
chromosome1 GeneDB mRNA 1558670 1559147 . + . mRNA SPAC167.09 ; db_xref "PMID:18488015" ; systematic_id "SPAC167.09" ; controlled_curation "term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "8" ; gene "SPAC167.09" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4561384 4562811 . - . mRNA SPAC637.12c ; systematic_id "SPAC637.12c" ; colour "2" ; gene "mst1 ||| SPAC637.12c" ; Alias "mst1" ; db_xref "SPD:21/21E06" ; synonym "kat5" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0035267; NuA4 histone acetyltransferase complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034508; centromere complex assembly
GO:0034508; centromere complex assembly
GO:0034508; centromere complex assembly
GO:0000070; mitotic sister chromatid segregation
GO:0006302; double-strand break repair
GO:0006302; double-strand break repair
GO:0043967; histone H4 acetylation
GO:0048478; replication fork protection
GO:0048478; replication fork protection
GO:0048478; replication fork protection
GO:0048478; replication fork protection
GO:0048478; replication fork protection
GO:0010485; histone H4 acetyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16199868; date=19700101 ||| term=chromodomain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR244W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20090212 ||| term=human Kat5 ortholog; date=20091221" ; primary_name "mst1" ; product "KAT5 family histone acetyltransferase Mst1" ;
chromosome1 GeneDB mRNA 3253269 3254430 . + . mRNA SPAC6G9.05 ; systematic_id "SPAC6G9.05" ; colour "7" ; gene "SPAC6G9.05 ||| pcd1" ; note "alterntive start at 12302" ; Alias "pcd1" ; db_xref "SPD:11/11D06" ; GO "GO:0016462; pyrophosphatase activity
GO:0005777; peroxisome
GO:0006732; coenzyme metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR151C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pcd1" ; product "coenzyme A diphosphatase (predicted)" ;
chromosome1 GeneDB mRNA 523062 526361 . + . mRNA SPAC227.15 ; db_xref "SPD:38/38F09" ; systematic_id "SPAC227.15" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR028C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0008599; protein phosphatase type 1 regulator activity
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0006109; regulation of carbohydrate metabolism
GO:0005737; cytoplasm
GO:0000164; protein phosphatase type 1 complex" ; gene "SPAC227.15" ; product "protein phosphatase regulatory subunit Reg1 (predicted)" ;
chromosome1 GeneDB mRNA 4172149 4173416 . + . mRNA SPAC25B8.10 ; db_xref "SPD:09/09E08" ; systematic_id "SPAC25B8.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YER175C and YHR209W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100821" ; GO "GO:0005829; cytosol
GO:0046547; trans-aconitate 3-methyltransferase activity
GO:0044262; cellular carbohydrate metabolism" ; gene "SPAC25B8.10" ; product "trans-aconitate 3-methyltransferase (predicted)" ; EC_number "2.1.1.145" ;
chromosome1 GeneDB mRNA 4288205 4291667 . - . mRNA SPAC2C4.17c ; db_xref "SPD:29/29B11" ; systematic_id "SPAC2C4.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0008381; mechanically-gated ion channel activity
GO:0034220; ion transmembrane transport
GO:0016021; integral to membrane
GO:0005509; calcium ion binding" ; gene "SPAC2C4.17c" ; product "MS ion channel protein 2 (predicted)" ;
chromosome1 GeneDB mRNA 5059273 5062056 . + . mRNA SPAC2E12.02 ; systematic_id "SPAC2E12.02" ; colour "2" ; gene "hsf1 ||| hstf ||| hsf ||| SPAC2E12.02" ; Alias "hsf1" ; db_xref "SPD:37/37G06" ; synonym "hstf ||| hsf" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression induced by heat shock; cv=gene_ex; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YGL073W and YHR206W and YOR140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=DNA binding specificity, binds HSE 5'-NGAANNTTCNNGAAN-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates ntp1; cv=gene_ex; date=20100302 ||| term=gene expression, transcriptionally regulates pss1; cv=gene_ex; date=20100302" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0033554; cellular response to stress" ; primary_name "hsf1" ; product "transcription factor Hsf1" ;
chromosome1 GeneDB mRNA 5063258 5066231 . + . mRNA SPAC2E12.05 ; Alias "wtf1" ; systematic_id "SPAC2E12.05" ; pseudo "_no_value" ; colour "13" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; gene "wtf1 ||| SPAC2E12.05" ; primary_name "wtf1" ; product "pseudogene wtf element Wtf1" ;
chromosome1 GeneDB mRNA 874293 875610 . - . mRNA SPAC23G3.05c ; db_xref "SPD:32/32C12" ; systematic_id "SPAC23G3.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR301W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0030010; establishment of cell polarity (sensu Fungi)" ; gene "SPAC23G3.05c" ; product "regulator of G-protein signaling (RGS) domain (predicted)" ;
chromosome1 GeneDB mRNA 5374067 5375000 . - . mRNA SPAC4D7.12c ; systematic_id "SPAC4D7.12c" ; colour "7" ; gene "fet5 ||| SPAC4D7.12c" ; db_xref "SPD:32/32A05" ; Alias "fet5" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR243W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fet5" ; product "ATP binding protein Fet5 (predicted)" ;
chromosome1 GeneDB mRNA 180903 182226 . - . mRNA SPAC13G6.05c ; systematic_id "SPAC13G6.05c" ; colour "7" ; gene "SPAC13G6.05c" ; Alias "trs33" ; db_xref "SPD:17/17B08" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0030008; TRAPP complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR115C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "trs33" ; product "TRAPP complex subunit Trs33 (predicted)" ;
chromosome1 GeneDB mRNA 2269908 2272722 . - . mRNA SPAC4G9.09c ; systematic_id "SPAC4G9.09c" ; colour "2" ; gene "arg11 ||| SPAC4G9.09c" ; Alias "arg11" ; db_xref "KEGG:MAP00220; ||| SPD:47/47A09" ; GO "GO:0006526; arginine biosynthesis
GO:0003942; N-acetyl-gamma-glutamyl-phosphate reductase activity
GO:0003991; acetylglutamate kinase activity
GO:0006592; ornithine biosynthesis
GO:0005759; mitochondrial matrix" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER069W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arg11" ; product "N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase" ; EC_number "2.7.2.8 ||| 1.2.1.38" ;
chromosome1 GeneDB mRNA 3337748 3338278 . + . mRNA SPAC26A3.04 ; systematic_id "SPAC26A3.04" ; colour "7" ; gene "rpl2002 ||| rpl20 ||| rpl20-2 ||| SPAC26A3.04" ; Alias "rpl2002" ; db_xref "SPD:39/39H07" ; synonym "rpl20 ||| rpl20-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR242C and YOR312C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl2002" ; product "60S ribosomal protein L20 (predicted)" ;
chromosome1 GeneDB mRNA 3321979 3322512 . + . mRNA SPAPB1E7.14 ; Alias "iec5" ; systematic_id "SPAPB1E7.14" ; controlled_curation "term=species distribution, no apparent orthologs; date=20080102 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=warning, gene structure updated; cv=warning; date=20090724 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; colour "2" ; primary_name "iec5" ; product "Ino80 complex subunit Iec5" ;
chromosome1 GeneDB mRNA 2924893 2926446 . - . mRNA SPAC2E1P3.02c ; systematic_id "SPAC2E1P3.02c" ; colour "2" ; gene "amt3 ||| SPAC2E1P3.02c" ; Alias "amt3" ; db_xref "SPD:25/25B09" ; GO "GO:0005887; integral to plasma membrane
GO:0008519; ammonium transporter activity
GO:0072488; methylammonium transporter activity
GO:0072499; ammonium transmembrane transport
GO:0015843; methylammonium transmembrane transport
GO:0031670; cellular response to nutrient" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:16999738; date=20061024 ||| term=orthologous to S. cerevisiae YPR138C and YGR121C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "amt3" ; product "ammonium transporter Amt3" ;
chromosome1 GeneDB mRNA 4669845 4671278 . - . mRNA SPAC144.09c ; systematic_id "SPAC144.09c" ; colour "2" ; gene "sfc2 ||| SPAC144.09c" ; Alias "sfc2" ; db_xref "SPD:18/18E04" ; GO "GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003709; RNA polymerase III transcription factor activity
GO:0005667; transcription factor complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; db_xref=PMID:12888341; date=19700101 ||| term=zf-C2H2 type; db_xref=PMID:12888341; date=19700101 ||| term=orthologous to S. cerevisiae YPR186C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sfc2" ; product "RNA polymerase III transcription factor TFIIIA" ;
chromosome1 GeneDB mRNA 99839 101653 . + . mRNA SPAC1F8.06 ; systematic_id "SPAC1F8.06" ; colour "2" ; gene "fta5 ||| SPAC1F8.06 ||| sma5" ; Alias "fta5" ; db_xref "SPD:18/18C09" ; synonym "sma5" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=GLEYA domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; qualifier=O-linked; cv=pt_mod; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall
GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; primary_name "fta5" ; product "cell surface glycoprotein" ;
chromosome1 GeneDB mRNA 967652 968379 . - . mRNA SPAC222.17 ; obsolete_name "SPNG161 ||| SPNCRNA.162" ; db_xref "PMID:18488015" ; systematic_id "SPAC222.17" ; controlled_curation "term=similar to D. hansenii DEHA0A06743g; date=20080102 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "10" ; gene "SPAC222.17" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 2421499 2423809 . - . mRNA SPAC6B12.07c ; db_xref "SPD:21/21C02" ; systematic_id "SPAC6B12.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=SPX domain protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination" ; gene "SPAC6B12.07c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB mRNA 3102844 3103771 . - . mRNA SPAC589.06c ; db_xref "SPD:41/41E12" ; systematic_id "SPAC589.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR106W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0016020; membrane
GO:0005739; mitochondrion
GO:2000185; regulation of phosphate transmembrane transport" ; gene "SPAC589.06c" ; product "pho88 family protein (predicted)" ;
chromosome1 GeneDB mRNA 2756391 2758924 . - . mRNA SPAC6F6.13c ; db_xref "SPD:46/46G11" ; systematic_id "SPAC6F6.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL034W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TMCO4 ortholog; date=20100718" ; colour "10" ; gene "SPAC6F6.13c" ; product "DUF726 family protein" ;
chromosome1 GeneDB mRNA 1744115 1745597 . - . mRNA SPAC105.02c ; db_xref "SPD:43/43D12" ; systematic_id "SPAC105.02c" ; GO "GO:0007127; meiosis I
GO:0007126; meiosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070321 ||| term=species distribution, conserved in Eukaryotes; date=20070321 ||| term=species distribution, conserved in Vertebrates; date=20070321 ||| term=species distribution, conserved in Metazoa; date=20070321 ||| term=species distribution, conserved in Eukaryotes only; date=20070321 ||| term=orthologous to S. cerevisiae YGL242C; date=19700101" ; colour "10" ; gene "SPAC105.02c" ; product "ankyrin repeat protein, implicated in meiosis" ;
chromosome1 GeneDB mRNA 1378369 1379850 . - . mRNA SPAC57A10.08c ; db_xref "SPD:18/18H03" ; systematic_id "SPAC57A10.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=abhydrolase family; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827 ||| term=orthologous to S. cerevisiae YBR204C; date=20100827" ; colour "10" ; gene "SPAC57A10.08c" ; product "carboxylic ester hydrolase activity (predicted)" ;
chromosome1 GeneDB mRNA 2821400 2823444 . + . mRNA SPAC3F10.03 ; systematic_id "SPAC3F10.03" ; colour "7" ; gene "SPAC3F10.03 ||| grs1" ; Alias "grs1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:27/27A09" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004820; glycine-tRNA ligase activity
GO:0006426; glycyl-tRNA aminoacylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR121C and YPR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "grs1" ; product "mitochondrial and cytoplasmic glycine-tRNA ligase Grs1 (predicted)" ; EC_number "6.1.1.14" ;
chromosome1 GeneDB mRNA 5009365 5010806 . + . mRNA SPAC890.05 ; db_xref "SPD:11/11C06" ; systematic_id "SPAC890.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=orthologous to S. cerevisiae YGR280C; date=19700101 ||| term=human PINX1 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0003723; RNA binding" ; gene "SPAC890.05" ; product "ribosome biogenesis protein, G-pathc domain, PINX1 family (predicted)" ;
chromosome1 GeneDB mRNA 3484695 3486502 . + . mRNA SPAC328.05 ; db_xref "SPD:36/36E08" ; systematic_id "SPAC328.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL004W and YCL011C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0030530; heterogeneous nuclear ribonucleoprotein complex" ; gene "SPAC328.05" ; product "RNA-binding protein involved in export of mRNAs (predicted)" ;
chromosome1 GeneDB mRNA 4100552 4101518 . - . mRNA SPAC23A1.20 ; Alias "new11" ; pseudo "_no_value" ; systematic_id "SPAC23A1.20" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "13" ; primary_name "new11" ; gene "SPAC23A1.20 ||| new11" ; product "conserved gene with no initiator methionine" ; note "conserved in japonicus; matches transcript from Solexa; can't find N-tem exon; No METHIONINE" ;
chromosome1 GeneDB mRNA 5317910 5319504 . + . mRNA SPAP8A3.03 ; systematic_id "SPAP8A3.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060611 ||| term=orthologous to S. cerevisiae YIL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; colour "7" ; GO "GO:0006829; zinc ion transport
GO:0006882; zinc ion homeostasis
GO:0005385; zinc ion transporter activity
GO:0030176; integral to endoplasmic reticulum membrane" ; gene "SPAP8A3.03" ; product "ZIP zinc transporter 1 (predicted)" ;
chromosome1 GeneDB mRNA 633148 633474 . - . mRNA SPAC1F3.08c ; db_xref "SPD:01/01G06" ; systematic_id "SPAC1F3.08c" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPAC1F3.08c" ; product "dubious" ;
chromosome1 GeneDB mRNA 1696488 1697641 . + . mRNA SPAC824.07 ; db_xref "SPD:12/12F07" ; systematic_id "SPAC824.07" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR272W and YOR040W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004416; hydroxyacylglutathione hydrolase activity
GO:0019243; methylglyoxal catabolism to D-lactate
GO:0051595; response to methylglyoxal" ; gene "SPAC824.07" ; product "hydroxyacylglutathione hydrolase (predicted)" ; EC_number "3.1.2.6" ;
chromosome1 GeneDB mRNA 2200560 2202981 . - . mRNA SPAC1783.07c ; systematic_id "SPAC1783.07c" ; colour "2" ; gene "pap1 ||| SPAC1783.07c" ; Alias "pap1" ; db_xref "SPD:40/40F06" ; synonym "caf3" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bZIP (basic leucine zipper) transcription factor family; date=19700101 ||| term=localization, undergoes nucleocytoplasmic shuttling; cv=localization; date=19700101 ||| term=orthologous to S. cerevisiae YML007W; date=19700101 ||| term=protein sequence feature, NES; cv=sequence_feature; db_xref=PMID:14758541; evidence=IMP; allele=caf3-89; date=19700101 ||| term=gene expression, expression induced by stress; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulates trr1; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulates obr1; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=DNA binding specificity, binds 5'-TGACTCA-3'; date=20091213 ||| term=modification, disulphide bond; cv=pt_mod; db_xref=PMID:15165244; date=20100122" ; GO "GO:0035267; NuA4 histone acetyltransferase complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0071243; cellular response to arsenic
GO:0071313; cellular response to caffeine
GO:0070301; cellular response to hydrogen peroxide
GO:0070301; cellular response to hydrogen peroxide
GO:0070301; cellular response to hydrogen peroxide
GO:0006995; cellular response to nitrogen starvation
GO:0034599; cellular response to oxidative stress
GO:0016573; histone acetylation
GO:0006355; regulation of transcription, DNA- dependent
GO:0051595; response to methylglyoxal" ; primary_name "pap1" ; product "transcription factor Pap1/Caf3" ;
chromosome1 GeneDB mRNA 4981215 4983568 . - . mRNA SPAC1952.09c ; db_xref "SPD:25/25C06" ; systematic_id "SPAC1952.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL015W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618 ||| term=species distribution, conserved in Metazoa; date=20090618 ||| term=species distribution, conserved in Bacteria; date=20090618 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; colour "7" ; GO "GO:0005829; cytosol
GO:0005739; mitochondrion
GO:0003986; acetyl-CoA hydrolase activity
GO:0006083; acetate metabolism
GO:0006084; acetyl-CoA metabolism
GO:0006633; fatty acid biosynthetic process" ; gene "SPAC1952.09c" ; product "acetyl-CoA hydrolase (predicted)" ;
chromosome1 GeneDB mRNA 3268311 3269487 . + . mRNA SPAC6G9.11 ; systematic_id "SPAC6G9.11" ; colour "2" ; gene "syb1 ||| SPAC6G9.11" ; Alias "syb1" ; db_xref "SPD:03/03E08" ; obsolete_name "snc1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, stubby cells; qualifier=high_penetrance|deletion; cv=phenotype; db_xref=PMID:12565827; date=20060106 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12565827; date=19700101 ||| term=orthologous to S. cerevisiae YAL030W and YOR327C; date=19700101 ||| term=SNARE; date=20080123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0051285; cell cortex of cell tip
GO:0030659; cytoplasmic vesicle membrane
GO:0032153; cell division site
GO:0005484; SNAP receptor activity
GO:0033205; cell cycle cytokinesis
GO:0006897; endocytosis
GO:0016192; vesicle-mediated transport" ; primary_name "syb1" ; product "SNAP receptor, synaptobrevin family" ;
chromosome1 GeneDB mRNA 4783037 4784682 . + . mRNA SPAC11H11.06 ; systematic_id "SPAC11H11.06" ; colour "2" ; gene "arp2 ||| SPAC11H11.06 ||| SPAC22F8.01" ; Alias "arp2" ; db_xref "SPD:19/19D11" ; synonym "SPAC22F8.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL029W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030100; regulation of endocytosis
GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0000147; actin cortical patch assembly" ; primary_name "arp2" ; product "ARP2/3 actin-organizing complex subunit Arp2" ;
chromosome1 GeneDB mRNA 2365447 2366882 . - . mRNA SPAC17G8.13c ; systematic_id "SPAC17G8.13c" ; colour "2" ; gene "reserved_name_mst2 ||| SPAC17G8.13c ||| mst2" ; note "functional studies suggest that Mst2 is functionally more similar to S. cerevisiae Sas2 than Sas3" ; Alias "mst2" ; db_xref "SPD:21/21E01" ; GO "GO:0000123; histone acetyltransferase complex
GO:0000790; nuclear chromatin
GO:0004402; histone acetyltransferase activity
GO:0016573; histone acetylation
GO:0031939; negative regulation of chromatin silencing at telomere
GO:0031939; negative regulation of chromatin silencing at telomere
GO:0031939; negative regulation of chromatin silencing at telomere
GO:0031939; negative regulation of chromatin silencing at telomere
GO:0051445; regulation of progression through meiotic cell cycle
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060920 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16199868; date=20061127 ||| term=orthologous to S. cerevisiae YBL052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human MYST1 and MYST2 and MYST3 and MYST4 ortholog; date=20100208" ; primary_name "mst2" ; product "histone acetyltransferase Mst2" ;
chromosome1 GeneDB mRNA 1200916 1205998 . - . mRNA SPAC10F6.01c ; systematic_id "SPAC10F6.01c" ; colour "2" ; gene "sir1 ||| SPAC4C5.05c ||| SPAC10F6.01c" ; Alias "sir1" ; db_xref "SPD:30/30H02" ; synonym "SPAC4C5.05c" ; GO "GO:0000103; sulfate assimilation
GO:0004783; sulfite reductase (NADPH) activity
GO:0000097; sulfur amino acid biosynthesis
GO:0005737; cytoplasm
GO:0009337; sulfite reductase complex (NADPH)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR137C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "sir1" ; product "sulfite reductase Sir1" ; EC_number "1.8.1.2 ||| 1.8.7.1" ;
chromosome1 GeneDB mRNA 1133226 1134356 . - . mRNA SPAC56F8.04c ; systematic_id "SPAC56F8.04c" ; colour "2" ; gene "coq2 ||| ppt1 ||| SPAC56F8.04c" ; Alias "ppt1" ; db_xref "SPD:16/16F05" ; synonym "coq2" ; GO "GO:0006744; ubiquinone biosynthesis
GO:0016094; polyprenol biosynthesis
GO:0008412; 4-hydroxybenzoate octaprenyltransferase activity
GO:0005743; mitochondrial inner membrane
GO:0031305; integral to mitochondrial inner membrane
GO:0016209; antioxidant activity
GO:0019646; aerobic electron transport chain
GO:0006119; oxidative phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, coenzyme Q deficiency; date=20060926 ||| term=orthologous to S. cerevisiae YNR041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, growth defect, requires antioxidant for growth; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to H202; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to copper ions; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222" ; primary_name "ppt1" ; product "para-hydroxybenzoate--polyprenyltransferasePpt1" ; EC_number "2.5.1.-" ;
chromosome1 GeneDB mRNA 3127647 3129351 . + . mRNA SPAC688.09 ; db_xref "SPD:17/17G11" ; systematic_id "SPAC688.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YBR192W; date=19700101 ||| term=human SLC25A36 ortholog; qualifier=predicted; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0015218; pyrimidine nucleotide transporter activity
GO:0000002; mitochondrial genome maintenance
GO:0006839; mitochondrial transport
GO:0006864; pyrimidine nucleotide transport" ; gene "SPAC688.09" ; product "mitochondrial pyrimidine nucletide transporter (predicted)" ;
chromosome1 GeneDB mRNA 1710502 1711067 . - . mRNA SPAC664.04c ; systematic_id "SPAC664.04c" ; colour "7" ; gene "rps1602 ||| rps16-2 ||| rps16 ||| SPAC664.04c" ; Alias "rps1602" ; db_xref "SPD:42/42C08" ; synonym "rps16-2 ||| rps16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL083C and YMR143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0042254; ribosome biogenesis" ; primary_name "rps1602" ; product "40S ribosomal protein S16 (predicted)" ;
chromosome1 GeneDB mRNA 385755 386149 . - . mRNA SPAC1751.02c ; systematic_id "SPAC1751.02c" ; colour "7" ; gene "SPAC1751.02c ||| rsm19" ; note "initiation is possibly at second Met, and upstream splicing possiply in 5' UTR" ; Alias "rsm19" ; db_xref "SPD:05/05G06" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR037C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; primary_name "rsm19" ; product "mitochondrial ribosomal protein subunit S19 (predicted)" ;
chromosome1 GeneDB mRNA 2436999 2437463 . - . mRNA SPAC6B12.14c ; db_xref "SPD:04/04C03" ; systematic_id "SPAC6B12.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "10" ; gene "SPAC6B12.14c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 498915 500620 . - . mRNA SPAC227.01c ; systematic_id "SPAC227.01c" ; colour "7" ; gene "SPAPB21F2.04c ||| SPAC227.01c" ; Alias "SPAPB21F2.04c" ; db_xref "SPD:50/50C11" ; synonym "SPAPB21F2.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EXS family protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR414C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016021; integral to membrane
GO:0006486; protein amino acid glycosylation
GO:0006621; protein retention in ER" ; primary_name "SPAPB21F2.04c" ; product "Erd1 homolog (predicted)" ;
chromosome1 GeneDB mRNA 2877445 2880527 . + . mRNA SPACUNK4.16c ; db_xref "SPD:29/29E10" ; systematic_id "SPACUNK4.16c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR261C and YML100W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0003825; alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0005992; trehalose biosynthesis
GO:0005946; alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)" ; gene "SPACUNK4.16c" ; product "alpha,alpha-trehalose-phosphate synthase (predicted)" ;
chromosome1 GeneDB mRNA 2338172 2339106 . + . mRNA SPAC6C3.08 ; db_xref "SPD:11/11A06" ; systematic_id "SPAC6C3.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR232W; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=disease associated, hepatoma; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human PSMD10 ortholog; date=20100203" ; colour "7" ; GO "GO:0005838; proteasome regulatory particle (sensu Eukaryota)
GO:0043161; proteasomal ubiquitin-dependent protein catabolism" ; gene "SPAC6C3.08" ; product "proteasome regulatory particle, gankyrin (predicted)" ;
chromosome1 GeneDB mRNA 1608047 1611070 . + . mRNA SPAC23H4.01c ; db_xref "SPD:29/29E11" ; systematic_id "SPAC23H4.01c" ; synonym "SPAP27G11.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YAR042W and YDL019C and YHR073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0008142; oxysterol binding
GO:0005545; phosphatidylinositol binding
GO:0005783; endoplasmic reticulum
GO:0015918; sterol transport
GO:0006897; endocytosis
GO:0006887; exocytosis" ; product "sterol binding ankyrin repeat protein (predicted)" ;
chromosome1 GeneDB mRNA 2587729 2588620 . + . mRNA SPAC823.04 ; db_xref "SPD:09/09D04" ; systematic_id "SPAC823.04" ; GO "GO:0000469; cleavage involved in rRNA processing
GO:0000462; maturation of SSU-rRNA from tricistronic rRNA rtransscript (SSU-rRNA, 5.8S rRNA, LSU- rRNA
GO:0042274; ribosomal small subnit biogenesis" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR287C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; colour "7" ; product "rRNA processing protein Rrp36, DUF947 family (predicted)" ;
chromosome1 GeneDB mRNA 2516152 2519232 . - . mRNA SPAC23H3.13c ; systematic_id "SPAC23H3.13c" ; colour "2" ; gene "gpa2 ||| git8 ||| SPAC23H3.13c" ; Alias "gpa2" ; db_xref "SPD:23/23F07" ; synonym "git8" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER020W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505" ; GO "GO:0005525; GTP binding
GO:0004871; signal transducer activity
GO:0030437; sporulation (sensu Fungi)
GO:0031670; cellular response to nutrient
GO:0007188; G-protein signaling, coupled to cAMP nucleotide second messenger
GO:0045014; negative regulation of transcription by glucose
GO:0005834; heterotrimeric G-protein complex
GO:0007189; G-protein signaling, adenylate cyclase activating pathway
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003924; GTPase activity" ; primary_name "gpa2" ; product "heterotrimeric G protein alpha-2 subunit Gpa2" ;
chromosome1 GeneDB mRNA 4855418 4856512 . + . mRNA SPAC4F10.12 ; systematic_id "SPAC4F10.12" ; colour "2" ; gene "fta1 ||| SPAC4F10.12 ||| sma1" ; Alias "fta1" ; db_xref "SPD:11/11A07" ; synonym "sma1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106 ||| term=species distribution, conserved in Fungi; date=20100723 ||| term=species distribution, conserved in Eukaryotes; date=20100723 ||| term=species distribution, conserved in Vertebrates; date=20100723 ||| term=species distribution, conserved in Metazoa; date=20100723 ||| term=species distribution, conserved in Eukaryotes only; date=20100723 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100723 ||| term=human CENPL ortholog; date=20100723 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; kinetochore" ; primary_name "fta1" ; product "CENP-L homolog Fta1" ;
chromosome1 GeneDB mRNA 692567 693061 . + . mRNA SPAC22F3.15 ; db_xref "PMID:18488015" ; systematic_id "SPAC22F3.15" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=orthologous to S. cerevisiae YOR215C; date=20080102 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPAC22F3.15" ; product "GatB/YqeY domain protein" ;
chromosome1 GeneDB mRNA 1106568 1107876 . - . mRNA SPAC30D11.07 ; systematic_id "SPAC30D11.07" ; colour "2" ; db_xref "SPD:16/16D03" ; Alias "nth1" ; GO "GO:0005759; mitochondrial matrix
GO:0005634; nucleus
GO:0034039; 8-oxo-7,8-dihydroguanine DNA N- glycosylase activity
GO:0034042; 5-formyluracil DNA N-glycosylase activity
GO:0034043; 5-hydroxymethyluracil DNA N- glycosylase activity
GO:0003677; DNA binding
GO:0008534; oxidized purine base lesion DNA N- glycosylase activity
GO:0000703; oxidized pyrimidine base lesion DNA N- glycosylase activity
GO:0006285; base-excision repair, AP site formation
GO:0006285; base-excision repair, AP site formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL015C and YOL043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sensitive to MMS; qualifier=deletion; cv=phenotype; db_xref=PMID:12675805; date=20100504" ; primary_name "nth1" ; product "DNA endonuclease III" ; EC_number "4.2.99.18" ;
chromosome1 GeneDB mRNA 1016103 1019031 . - . mRNA SPAC139.01c ; systematic_id "SPAC139.01c" ; colour "7" ; gene "SPAC955.02c ||| SPAC139.01c" ; Alias "SPAC955.02c" ; db_xref "SPD:29/29B05" ; synonym "SPAC955.02c" ; GO "GO:0004518; nuclease activity
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=XP-G family; date=19700101 ||| term=orthologous to S. cerevisiae YNL085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "SPAC955.02c" ; product "nuclease, XP-G family (predicted)" ;
chromosome1 GeneDB mRNA 4431869 4434012 . - . mRNA SPAC16.05c ; systematic_id "SPAC16.05c" ; colour "7" ; gene "sfp1 ||| SPAC16.05c" ; Alias "sfp1" ; db_xref "SPD:20/20E11" ; GO "GO:0006355; regulation of transcription, DNA- dependent
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YLR403W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human JAZF1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "sfp1" ; product "transcription factor Sfp1 (predicted)" ;
chromosome1 GeneDB mRNA 4777439 4778521 . - . mRNA SPAC11H11.02c ; systematic_id "SPAC11H11.02c" ; colour "8" ; gene "SPAC11H11.02c ||| mug162" ; db_xref "SPD:14/14D10" ; Alias "mug162" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug162" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4098280 4100152 . - . mRNA SPAC23A1.12c ; systematic_id "SPAC23A1.12c" ; colour "7" ; gene "SPAC23A1.12c ||| frs1" ; Alias "frs1" ; obsolete_name "frs2" ; db_xref "KEGG:MAP00400; ||| KEGG:MAP00970; ||| SPD:36/36F08" ; GO "GO:0006432; phenylalanyl-tRNA aminoacylation
GO:0004826; phenylalanine-tRNA ligase activity
GO:0005737; cytoplasm
GO:0009328; phenylalanine-tRNA ligase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "frs1" ; product "phenylalanine-tRNA ligase beta subunit Frs1 (predicted)" ; EC_number "6.1.1.20" ;
chromosome1 GeneDB mRNA 2113993 2114872 . + . mRNA SPAC20H4.02 ; systematic_id "SPAC20H4.02" ; colour "10" ; gene "SPAC20H4.02" ; db_xref "SPD:41/41F01" ; Alias "dsc3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR223W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "dsc3" ; product "conserved fungal protein" ; reserved_name "dsc3" ;
chromosome1 GeneDB mRNA 1182787 1185483 . - . mRNA SPAC22A12.15c ; systematic_id "SPAC22A12.15c" ; colour "2" ; gene "SPAC22A12.15c" ; Alias "bip1" ; db_xref "SPD:27/27C11" ; synonym "bip" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, ER retention signal; residue=A660-L663; db_xref=PMID:1373379; cv=sequence_feature; date=20060612 ||| term=modification, glycosylated; cv=pt_mod; db_xref=PMID:8227200; date=20060823 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060823 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:1373379; date=19700101 ||| term=orthologous to S. cerevisiae YJL034W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005788; endoplasmic reticulum lumen
GO:0031965; nuclear membrane
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0005515; protein binding
GO:0030433; ER-associated protein catabolism
GO:0051084; posttranslational protein folding
GO:0034620; cellular response to unfolded protein
GO:0051082; unfolded protein binding" ; primary_name "bip1" ; product "ER heat shock protein BiP" ;
chromosome1 GeneDB mRNA 2953728 2954932 . - . mRNA SPAPB24D3.04c ; Alias "mag1" ; systematic_id "SPAPB24D3.04c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER142C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0006284; base-excision repair
GO:0006284; base-excision repair
GO:0000725; recombinational repair
GO:0006307; DNA dealkylation
GO:0003905; alkylbase DNA N-glycosylase activity
GO:0005634; nucleus
GO:0006285; base-excision repair, AP site formation
GO:0003684; damaged DNA binding" ; gene "mag1 ||| SPAPB24D3.04c" ; primary_name "mag1" ; product "DNA-3-methyladenine glycosylase Mag1" ; EC_number "3.2.2.21" ;
chromosome1 GeneDB mRNA 2341251 2343947 . - . mRNA SPAC17G8.01c ; systematic_id "SPAC17G8.01c" ; colour "7" ; gene "trl1 ||| SPAC6C3.10c ||| SPAC17G8.01c" ; note "overlaps and extends orf SPAC6C3.09c which has similar to tRNA ligase, no met initiation codon near 5' end in this frame and splicing uncertain" ; Alias "trl1" ; db_xref "SPD:52/52B07" ; synonym "SPAC6C3.10c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL087C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005637; nuclear inner membrane
GO:0003972; RNA ligase (ATP) activity
GO:0006388; tRNA splicing
GO:0004113; 2',3'-cyclic-nucleotide 3'- phosphodiesterase activity
GO:0051730; GTP-dependent polyribonucleotide 5'- hydroxyl-kinase activity" ; primary_name "trl1" ; product "tRNA ligase Trl1 (predicted)" ;
chromosome1 GeneDB mRNA 2661738 2662453 . + . mRNA SPAC4F8.10c ; systematic_id "SPAC4F8.10c" ; colour "2" ; gene "stg1 ||| SPAC4F8.10c" ; Alias "stg1" ; db_xref "SPD:05/05C02" ; GO "GO:0030036; actin cytoskeleton organization and biogenesis
GO:0030479; actin cortical patch
GO:0007015; actin filament organization
GO:0051015; actin filament binding
GO:0051764; actin cross link formation
GO:0071776; negative regulation of cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=calponin homology (CH) domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR367W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "stg1" ; product "SM22/transgelin-like actin modulating protein Stg1" ;
chromosome1 GeneDB mRNA 4570458 4575630 . - . mRNA SPAC12B10.01c ; systematic_id "SPAC12B10.01c" ; colour "7" ; gene "SPAC637.15c ||| SPAC31F12.02c ||| SPAC12B10.01c" ; Alias "SPAC637.15c" ; db_xref "SPD:31/31A07" ; synonym "SPAC31F12.02c ||| SPAC637.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YKL010C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination" ; primary_name "SPAC637.15c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB mRNA 1728569 1728894 . - . mRNA SPAC664.12c ; db_xref "SPD:01/01G05" ; systematic_id "SPAC664.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR379C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SDHAF1 ortholog; date=20100718 ||| term=disease associated, infantile leukoencephalopathy; date=20100718 ||| term=ACN9 family; date=20100820" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0016226; iron-sulfur cluster biosynthesis
GO:0005759; mitochondrial matrix
GO:0034553; mitochondrial respriatory chain complex II assembly" ; gene "SPAC664.12c" ; product "mitochondrial succinate dehydrogenase assembly factor 1 (predicted)" ;
chromosome1 GeneDB mRNA 3160230 3161942 . + . mRNA SPAC3G9.11c ; db_xref "SPD:45/45F02" ; systematic_id "SPAC3G9.11c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR087C and YLR134W and YLR044C and YDL080C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009063; amino acid catabolic process
GO:0006091; generation of precursor metabolites and energy" ; gene "SPAC3G9.11c" ; product "pyruvate decarboxylase (predicted)" ; EC_number "4.1.1.1" ;
chromosome1 GeneDB mRNA 4875438 4878120 . + . mRNA SPAC19B12.01 ; systematic_id "SPAC19B12.01" ; colour "10" ; gene "SPAC4F10.21 ||| SPAC19B12.01" ; Alias "SPAC4F10.21" ; db_xref "SPD:38/38D07" ; synonym "SPAC4F10.21" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL313C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TTC27 ortholog; date=20100301" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; primary_name "SPAC4F10.21" ; product "TPR repeat protein, TTC27 family" ;
chromosome1 GeneDB mRNA 5104452 5106326 . - . mRNA SPAC29A4.20 ; systematic_id "SPAC29A4.20" ; colour "7" ; gene "elp3 ||| SPAC29A4.20" ; Alias "elp3" ; db_xref "SPD:35/35G01" ; synonym "kat9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004402; histone acetyltransferase activity
GO:0006400; tRNA modification
GO:0033588; Elongator holoenzyme complex" ; primary_name "elp3" ; product "elongator complex, histone acetyltransferase subunit Elp3 (predicted)" ;
chromosome1 GeneDB mRNA 3008184 3009317 . - . mRNA SPAC31G5.12c ; systematic_id "SPAC31G5.12c" ; colour "2" ; gene "maf1 ||| n150 ||| SPAC31G5.12c" ; Alias "maf1" ; db_xref "SPD:40/40A10" ; synonym "n150" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:15590667; date=20081219" ; GO "GO:0016480; negative regulation of transcription from RNA polymerase III promoter
GO:0005634; nucleus
GO:0016564; transcription repressor activity
GO:0070217; TFIIIB complex assembly" ; primary_name "maf1" ; product "repressor of RNA polymerase III Maf1" ;
chromosome1 GeneDB mRNA 633652 636959 . + . mRNA SPAC1F3.09 ; systematic_id "SPAC1F3.09" ; colour "7" ; gene "SPAC1F3.09 ||| mug161" ; Alias "mug161" ; db_xref "SPD:46/46C08" ; GO "GO:0005634; nucleus
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR093W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human CWF19L1 ortholog; date=20100226" ; primary_name "mug161" ; product "CwfJ family protein, splicing factor (predicted)" ;
chromosome1 GeneDB mRNA 1643082 1643652 . + . mRNA SPAC343.03 ; systematic_id "SPAC343.03" ; colour "2" ; gene "apc11 ||| SPAC343.03" ; Alias "apc11" ; db_xref "SPD:05/05E08" ; GO "GO:0005680; anaphase-promoting complex
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0008054; cyclin catabolism
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "apc11" ; product "anaphase-promoting complex subunit Apc11" ;
chromosome1 GeneDB mRNA 968563 970377 . - . mRNA SPAC222.12c ; systematic_id "SPAC222.12c" ; colour "2" ; gene "atp2 ||| SPAC222.12c" ; Alias "atp2" ; db_xref "SPD:25/25D07" ; GO "GO:0005754; mitochondrial proton-transporting ATP synthase, catalytic core
GO:0043531; ADP binding
GO:0016887; ATPase activity
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR121W; date=19700101 ||| term=complementation, functionally complemented by S. cerevisiae ATP2; db_xref=PMID:6228552; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "atp2" ; product "F1-ATPase beta subunit Atp2" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB mRNA 2985742 2988821 . - . mRNA SPAPB1A11.04c ; systematic_id "SPAPB1A11.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPAC1327.01C and SPBC530.11c; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAPB1A11.04c" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB mRNA 5019371 5021349 . + . mRNA SPAC22E12.01 ; systematic_id "SPAC22E12.01" ; colour "7" ; gene "SPAC890.09 ||| SPAC22E12.01" ; Alias "SPAC890.09" ; db_xref "SPD:18/18F06" ; synonym "SPAC890.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0035436; triose phosphate transmembrane transport
GO:0071917; triose-phosphate transmembrane transporter activity" ; primary_name "SPAC890.09" ; product "triose phosphate transporter (predicted)" ;
chromosome1 GeneDB mRNA 3809345 3810034 . - . mRNA SPAC1F12.02c ; db_xref "SPD:05/05A02" ; systematic_id "SPAC1F12.02c" ; synonym "p23fy" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL056C; date=19700101 ||| term=human TCTP ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006412; translation" ; product "translationally controlled tumor protein homolog (predicted)" ;
chromosome1 GeneDB mRNA 1731083 1733268 . + . mRNA SPAC664.14 ; systematic_id "SPAC664.14" ; colour "2" ; gene "amt2 ||| SPAC664.14" ; Alias "amt2" ; db_xref "SPD:24/24H09" ; GO "GO:0005887; integral to plasma membrane
GO:0008519; ammonium transporter activity
GO:0015200; methylammonium transporter activity
GO:0072488; ammonium transmembrane transport
GO:0072499; methylammonium transmembrane transport
GO:0031670; cellular response to nutrient" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:16999738; date=20061024 ||| term=orthologous to S. cerevisiae YPR138C and YGR121C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "amt2" ; product "ammonium transporter Amt2" ;
chromosome1 GeneDB mRNA 3935322 3938074 . + . mRNA SPAC2F3.08 ; systematic_id "SPAC2F3.08" ; colour "2" ; gene "sut1 ||| SPAC2F3.08" ; db_xref "SPD:35/35F11" ; Alias "sut1" ; GO "GO:0015151; alpha-glucoside transporter activity
GO:0015770; sucrose transport
GO:0015768; maltose transport
GO:0005887; integral to plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "sut1" ; product "alpha-glucoside transporter Sut1" ;
chromosome1 GeneDB mRNA 5464248 5465060 . + . mRNA SPAC1039.08 ; db_xref "KEGG:MAP00272; ||| KEGG:MAP00920; ||| SPD:22/22A09" ; systematic_id "SPAC1039.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0006535; cysteine biosynthesis from serine
GO:0009001; serine O-acetyltransferase activity" ; gene "SPAC1039.08" ; product "serine acetyltransferase (predicted)" ; EC_number "2.3.1.30" ;
chromosome1 GeneDB mRNA 130251 131076 . + . mRNA SPAC11D3.13 ; db_xref "SPD:42/42H01" ; systematic_id "SPAC11D3.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR533C and YPL280W and YOR391C and YMR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC11D3.13" ; product "ThiJ domain protein" ;
chromosome1 GeneDB mRNA 1835307 1836957 . + . mRNA SPAC1002.19 ; systematic_id "SPAC1002.19" ; colour "10" ; gene "urg1 ||| SPAC1002.19" ; db_xref "SPD:23/23A03" ; Alias "urg1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Uracil Regulatable Gene; cv=name_description; date=20060912 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "urg1" ; product " ||| GTP cyclohydrolase II (predicted)" ; reserved_name "urg1" ;
chromosome1 GeneDB mRNA 333312 334521 . - . mRNA SPAC12G12.08 ; systematic_id "SPAC12G12.08" ; colour "7" ; gene "SPAC12G12.08 ||| mrpl6" ; Alias "mrpl6" ; db_xref "SPD:42/42F03" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR147C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "mrpl6" ; product "mitochondrial ribosomal protein subunit L16 (predicted)" ;
chromosome1 GeneDB mRNA 3996423 4000424 . - . mRNA SPAPB15E9.03c ; Alias "Tf2-5" ; systematic_id "SPAPB15E9.03c" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "Tf2-5 ||| SPAPB15E9.03c" ; primary_name "Tf2-5" ; product "retrotransposable element" ;
chromosome1 GeneDB mRNA 3617071 3618852 . - . mRNA SPAC17G6.14c ; systematic_id "SPAC17G6.14c" ; colour "2" ; gene "uap56 ||| SPAC17G6.14c" ; Alias "uap56" ; db_xref "SPD:22/22G01" ; GO "GO:0005681; spliceosome complex
GO:0000346; transcription export complex
GO:0004004; ATP-dependent RNA helicase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006406; mRNA export from nucleus
GO:0000348; nuclear mRNA branch site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDL084W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=complementation, functionally complements S. cerevisiae SUB2; db_xref=PMID:11156603; date=20101012" ; primary_name "uap56" ; product "ATP-dependent RNA helicase Uap56" ;
chromosome1 GeneDB mRNA 903042 903861 . + . mRNA SPAC1687.01 ; systematic_id "SPAC1687.01" ; colour "2" ; gene "rpc19 ||| rpa17 ||| SPAPYUL23.01 ||| SPAC1687.01" ; Alias "rpc19" ; db_xref "SPD:06/06B07" ; synonym "rpa17 ||| SPAPYUL23.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=complementation, functionally complements S. cerevisiae RPC19; db_xref=PMID:10079952; date=20101012 ||| term=orthologous to S. cerevisiae YNL113W; date=19700101 ||| term=human POLR1D ortholog; date=20101012" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006360; transcription from RNA polymerase I promoter
GO:0006383; transcription from RNA polymerase III promoter" ; primary_name "rpc19" ; product "DNA-directed RNA polymerase I and III subunit Rpc19" ;
chromosome1 GeneDB mRNA 1198459 1199619 . + . mRNA SPAC4C5.04 ; systematic_id "SPAC4C5.04" ; colour "2" ; gene "rad31 ||| uba4 ||| SPAC4C5.04" ; Alias "rad31" ; db_xref "SPD:18/18C10" ; synonym "uba4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9092625; date=19700101 ||| term=phenotype, cell morphology, elongated cells; allele=rad31-1; db_xref=PMID:9092625; date=20100802 ||| term=UBA domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YPR180W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0031510; SUMO activating enzyme complex
GO:0005634; nucleus
GO:0019948; SUMO activating enzyme activity
GO:0016925; protein sumoylation
GO:0016925; protein sumoylation
GO:0006974; response to DNA damage stimulus
GO:0007346; regulation of mitotic cell cycle" ; primary_name "rad31" ; product "SUMO E1-like activator enzyme Rad31" ;
chromosome1 GeneDB mRNA 3278951 3280232 . - . mRNA SPAC6G9.16c ; systematic_id "SPAC6G9.16c" ; colour "8" ; gene "SPAC6G9.16c" ; note "gene prediciton extended by transcript data" ; db_xref "SPD:03/03A07" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 224246 229197 . - . mRNA SPAC24B11.12c ; db_xref "SPD:30/30G07" ; systematic_id "SPAC24B11.12c" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0004012; phospholipid-translocating ATPase activity
GO:0006897; endocytosis
GO:0006886; intracellular protein transport
GO:0045332; phospholipid translocation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR093W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; gene "SPAC24B11.12c" ; product "P-type ATPase (predicted)" ; EC_number "3.6.3.1" ;
chromosome1 GeneDB mRNA 2318638 2320239 . - . mRNA SPAC13G7.13c ; systematic_id "SPAC13G7.13c" ; colour "2" ; gene "msa1 ||| SPAC6C3.01c ||| SPAC13G7.13c" ; Alias "msa1" ; db_xref "SPD:25/25F08" ; synonym "SPAC6C3.01c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL024W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0031138; negative regulation of conjugation with cellular fusion" ; primary_name "msa1" ; product "RNA-binding protein Msa1" ;
chromosome1 GeneDB mRNA 3061423 3063526 . + . mRNA SPAC24C9.08 ; db_xref "SPD:36/36D03" ; systematic_id "SPAC24C9.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0000324; vacuole (sensu Fungi)
GO:0004180; carboxypeptidase activity
GO:0051603; proteolysis involved in cellular protein catabolic process
GO:0007039; vacuolar protein catabolic process" ; gene "SPAC24C9.08" ; product "vacuolar carboxypeptidase (predicted)" ; EC_number "3.4.17.4" ;
chromosome1 GeneDB mRNA 2854896 2855669 . - . mRNA SPAC8F11.02c ; systematic_id "SPAC8F11.02c" ; colour "7" ; gene "SPAC8F11.02c" ; Alias "dph3" ; db_xref "SPD:02/02A07" ; GO "GO:0017183; peptidyl-diphthamide biosynthesis from peptidyl-histidine
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0002098; tRNA wobble uridine modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CSL; date=19700101 ||| term=orthologous to S. cerevisiae YBL071W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human DPH3 ortholog; date=20100120" ; primary_name "dph3" ; product "diphthamide biosynthesis protein Dph3 (predicted)" ;
chromosome1 GeneDB mRNA 2670293 2671587 . - . mRNA SPAC4F8.04 ; db_xref "SPD:12/12G10" ; systematic_id "SPAC4F8.04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0003723; RNA binding
GO:0000466; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0000463; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0042134; rRNA primary transcript binding
GO:0000027; ribosomal large subunit assembly and maintenance
GO:0042254; ribosome biogenesis and assembly" ; gene "SPAC4F8.04" ; product "Brix domain protein Rpf1 (predicted)" ;
chromosome1 GeneDB mRNA 4989781 4990986 . - . mRNA SPAC1952.12c ; systematic_id "SPAC1952.12c" ; colour "7" ; gene "csn71 ||| csn7a ||| csn7 ||| SPAC1952.12c" ; Alias "csn71" ; db_xref "SPD:07/07A02" ; synonym "csn7a ||| csn7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0010388; cullin deneddylation
GO:0008180; signalosome" ; primary_name "csn71" ; product "COP9/signalosome complex subunit 7a (predicted)" ;
chromosome1 GeneDB mRNA 7619 9274 . + . mRNA SPAC212.09c ; systematic_id "SPAC212.09c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC212.09c" ; product "pseudogene" ; note "malic enzyme with 2 frameshifts" ;
chromosome1 GeneDB mRNA 2253416 2254296 . + . mRNA SPAC13D6.05 ; systematic_id "SPAC13D6.05" ; colour "2" ; gene "alp11 ||| SPAC4G9.01 ||| SPAC13D6.05" ; Alias "alp11" ; db_xref "SPD:08/08C09" ; synonym "SPAC4G9.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL148C; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0006457; alpha-tubulin folding
GO:0007023; post-chaperonin tubulin folding pathway
GO:0043014; alpha-tubulin binding
GO:0005515; protein binding
GO:0000226; microtubule cytoskeleton organization" ; primary_name "alp11" ; product "tubulin specific chaperone cofactor B" ;
chromosome1 GeneDB mRNA 2280365 2281798 . + . mRNA SPAC4G9.14 ; db_xref "SPD:15/15F02" ; systematic_id "SPAC4G9.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR251W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006067; ethanol metabolism
GO:0000002; mitochondrial genome maintenance" ; gene "SPAC4G9.14" ; product "mitochondrial Mvp17/PMP22 family protein 2 (predicted)" ;
chromosome1 GeneDB mRNA 1868087 1871880 . - . mRNA SPAPB1A10.06c ; systematic_id "SPAPB1A10.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YMR128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0003724; RNA helicase activity
GO:0030490; processing of 20S pre-rRNA" ; gene "SPAPB1A10.06c" ; product "ATP-dependent RNA helicase Dhr1 (predicted)" ;
chromosome1 GeneDB mRNA 303115 304019 . + . mRNA SPAC18B11.09c ; db_xref "SPD:11/11D11" ; systematic_id "SPAC18B11.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL218W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0009001; serine O-acetyltransferase activity
GO:0006563; L-serine metabolic process" ; gene "SPAC18B11.09c" ; product "serine O-acetyltransferase activity (predicted)" ; EC_number "2.3.1.30" ;
chromosome1 GeneDB mRNA 2533805 2536556 . + . mRNA SPAC25H1.07 ; systematic_id "SPAC25H1.07" ; colour "7" ; gene "SPAC25H1.07 ||| emc1" ; db_xref "SPD:47/47A10" ; Alias "emc1" ; GO "GO:0034975; protein folding in the endoplasmic reticulum
GO:0072546; ER membrane protein complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL045C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "emc1" ; product "ER membrane protein complex subunit Emc1 (predicted)" ;
chromosome1 GeneDB mRNA 1058375 1061071 . + . mRNA SPAC23C4.17 ; db_xref "SPD:28/28B11" ; systematic_id "SPAC23C4.17" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016428; tRNA (cytosine-5-)-methyltransferase activity
GO:0030488; tRNA methylation
GO:0005634; nucleus" ; gene "SPAC23C4.17" ; product "tRNA (cytosine-5-)-methyltransferase (predicted)" ; EC_number "2.1.1.29" ;
chromosome1 GeneDB mRNA 4975630 4977844 . - . mRNA SPAC1952.06c ; db_xref "SPD:45/45E10" ; systematic_id "SPAC1952.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPAC1952.06c" ; product "DUF1716 family protein" ;
chromosome1 GeneDB mRNA 1446511 1449373 . + . mRNA SPAC3A12.15 ; systematic_id "SPAC3A12.15" ; colour "7" ; gene "vps53 ||| SPAC3A12.15" ; Alias "vps53" ; db_xref "SPD:28/28B07" ; GO "GO:0000938; GARP complex
GO:0016192; vesicle-mediated transport
GO:0006896; Golgi to vacuole transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps53" ; product "GARP complex subunit Vps53 (predicted)" ;
chromosome1 GeneDB mRNA 5069587 5070901 . + . mRNA SPAC1006.02 ; systematic_id "SPAC1006.02" ; colour "2" ; gene "asa1 ||| SPAC1006.02" ; Alias "asa1" ; db_xref "SPD:17/17D08" ; GO "GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR085C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human GNB1L ortholog; date=20081217" ; primary_name "asa1" ; product "Astra associated protein 1 Asa1" ;
chromosome1 GeneDB mRNA 461735 463388 . + . mRNA SPAC24H6.12c ; systematic_id "SPAC24H6.12c" ; colour "2" ; gene "uba3 ||| SPAC24H6.12c" ; Alias "uba3" ; db_xref "SPD:20/20F06" ; GO "GO:0019781; NEDD8 activating enzyme activity
GO:0045116; protein neddylation
GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10880460; date=20100708 ||| term=orthologous to S. cerevisiae YPR066W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "uba3" ; product "NEDD8 activating enzyme" ;
chromosome1 GeneDB mRNA 5412457 5413219 . + . mRNA SPAC29B12.03 ; systematic_id "SPAC29B12.03" ; colour "2" ; gene "spd1 ||| SPAC29B12.03" ; Alias "spd1" ; db_xref "SPD:02/02F08" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004857; enzyme inhibitor activity
GO:0004857; enzyme inhibitor activity
GO:0043495; protein anchor
GO:0043495; protein anchor
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0045749; negative regulation of S phase of mitotic cell cycle
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, degradation is promoted by two separate CSN-dependent mechanisms; db_xref=PMID:12695334; date=19700101 ||| term=modification, ubiquitinated; cv=pt_mod; date=19700101 ||| term=orthologous to S. cerevisiae YLR437C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "spd1" ; product "ribonucleotide reductase (RNR) inhibitor" ;
chromosome1 GeneDB mRNA 3579575 3582933 . + . mRNA SPAC17A2.12 ; db_xref "SPD:38/38H11" ; systematic_id "SPAC17A2.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=helicase C-terminal domain; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YOR191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0016585; chromatin remodeling complex
GO:0006338; chromatin remodeling
GO:0004003; ATP-dependent DNA helicase activity
GO:0006281; DNA repair
GO:0000790; nuclear chromatin
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAC17A2.12" ; product "ATP-dependent DNA helicase (predicted)" ;
chromosome1 GeneDB mRNA 517507 518936 . - . mRNA SPAC227.13c ; systematic_id "SPAC227.13c" ; colour "2" ; gene "isu1 ||| SPAC227.13c" ; Alias "isu1" ; db_xref "SPD:50/50A08" ; GO "GO:0005759; mitochondrial matrix
GO:0006879; iron ion homeostasis
GO:0016226; iron-sulfur cluster assembly
GO:0051537; 2 iron, 2 sulfur cluster binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR226C and YPL135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "isu1" ; product "mitochondrial iron-sulfur cluster assembly scaffold protein Isu1" ;
chromosome1 GeneDB mRNA 990230 991662 . + . mRNA SPAC821.06 ; systematic_id "SPAC821.06" ; colour "2" ; gene "spn2 ||| SPAC821.06" ; Alias "spn2" ; db_xref "SPD:20/20D09" ; GO "GO:0005525; GTP binding
GO:0005940; septin ring
GO:0031105; septin complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15385632; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; date=20100727 ||| term=orthologous to S. cerevisiae YCR002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "spn2" ; product "septin Spn2" ;
chromosome1 GeneDB mRNA 1112214 1115798 . + . mRNA SPAC30D11.04c ; systematic_id "SPAC30D11.04c" ; colour "2" ; gene "nup124 ||| SPAC30D11.04c" ; Alias "nup124" ; db_xref "SPD:48/48D05" ; GO "GO:0005643; nuclear pore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051170; nuclear import
GO:0051170; nuclear import
GO:0032197; transposition, RNA-mediated
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=FG repeat; qualifier=inferred from context; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10409764; date=19700101 ||| term=human Nup153 ortholog; db_xref=PMID:15659641; date=19700101 ||| term=orthologous to S. cerevisiae YOR098C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nup124" ; product "nucleoporin Nup124" ;
chromosome1 GeneDB mRNA 906851 908433 . + . mRNA SPAC1687.04 ; systematic_id "SPAC1687.04" ; colour "7" ; gene "SPAC1687.04" ; db_xref "SPD:45/45A03" ; Alias "mcb1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human MCMBP1 ortholog; date=20101104" ; GO "GO:0006281; DNA repair
GO:0006260; DNA replication" ; primary_name "mcb1" ; product "MCM binding protein homolog Mcb1 (predicted)" ; reserved_name "mcb1" ;
chromosome1 GeneDB mRNA 468720 469890 . + . mRNA SPAC24H6.10c ; db_xref "SPD:17/17D05" ; systematic_id "SPAC24H6.10c" ; colour "7" ; GO "GO:0003849; 3-deoxy-7-phosphoheptulonate synthase activity
GO:0009073; aromatic amino acid family biosynthesis
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0009073; aromatic amino acid family biosynthesis, shikimate pathway" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR035W and YBR249C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPAC24H6.10c" ; product "phospho-2-dehydro-3-deoxyheptonate aldolase (predicted)" ; EC_number "2.5.1.54" ;
chromosome1 GeneDB mRNA 2287186 2288189 . + . mRNA SPAC4G9.19 ; db_xref "SPD:10/10D07" ; systematic_id "SPAC4G9.19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding
GO:0030433; ER-associated protein catabolic process" ; gene "SPAC4G9.19" ; product "DNAJ domain protein DNAJB family (predicted)" ;
chromosome1 GeneDB mRNA 3377901 3378094 . - . mRNA SPAC8E11.06 ; db_xref "SPD:01/01A09" ; systematic_id "SPAC8E11.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC8E11.06" ; product "sequence orphan" ; note "predicted from EST data" ;
chromosome1 GeneDB mRNA 3388232 3389716 . + . mRNA SPAC959.02 ; systematic_id "SPAC959.02" ; colour "7" ; gene "sec17 ||| SPAC959.02" ; Alias "sec17" ; db_xref "SPD:17/17A01" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0042144; vacuole fusion, non-autophagic
GO:0005483; soluble NSF attachment protein activity
; SNARE complex
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL050W; date=19700101 ||| term=human NAPA ortholog; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec17" ; product "alpha SNAP (predicted)" ;
chromosome1 GeneDB mRNA 85598 86278 . - . mRNA SPAC1F8.02c ; db_xref "SPD:42/42H09" ; systematic_id "SPAC1F8.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis
GO:0031232; extrinsic to external side of plasma membrane" ; gene "SPAC1F8.02c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3508570 3510077 . - . mRNA SPAC16E8.06c ; systematic_id "SPAC16E8.06c" ; colour "7" ; gene "SPAC16E8.06c ||| nop12" ; Alias "nop12" ; db_xref "SPD:21/21B05" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL041C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "nop12" ; product "RNA-binding protein Nop12 (predicted)" ;
chromosome1 GeneDB mRNA 4637119 4637943 . + . mRNA SPAC30C2.03 ; db_xref "SPD:07/07C04" ; systematic_id "SPAC30C2.03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC30C2.03" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 664356 667381 . + . mRNA SPAC1D4.12 ; systematic_id "SPAC1D4.12" ; colour "2" ; gene "rad15 ||| rhp3 ||| SPAC1D4.12" ; Alias "rad15" ; db_xref "SPD:38/38C06" ; synonym "rhp3" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0000112; nucleotide-excision repair factor 3 complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000717; nucleotide-excision repair, DNA duplex unwinding
GO:0043141; ATP-dependent 5' to 3' DNA helicase activity
GO:0005524; ATP binding
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:1534406; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YER171W; date=19700101 ||| term=human ERCC2 ortholog; date=20080602 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rad15" ; product "transcription factor TFIIH complex subunit Rad15" ; EC_number "3.6.1.-" ;
chromosome1 GeneDB mRNA 2025220 2025880 . + . mRNA SPAC17H9.11 ; systematic_id "SPAC17H9.11" ; colour "2" ; gene "SPAC17H9.11" ; Alias "gmf1" ; db_xref "SPD:03/03E02" ; GO "GO:0000147; actin patch assembly
GO:0030479; actin cortical patch
GO:0034316; negative regulation of Arp2/3 complex mediated actin nucleation
GO:0003779; actin binding
GO:0071933; ARP 2/3 complex binding" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cofilin/tropomyosin family; date=19700101 ||| term=orthologous to S. cerevisiae YDR063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; db_xref=PMID:20517925; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); db_xref=PMID:20517925; date=20100608 ||| term=name description, mouse Glia Maturation Factor homolog; db_xref=PMID:20517925; date=20100608" ; primary_name "gmf1" ; product "cofilin/tropomyosin family Glia Maturation Factor homolog Gmf1" ;
chromosome1 GeneDB mRNA 1807270 1807781 . - . mRNA SPAC1002.06c ; systematic_id "SPAC1002.06c" ; colour "2" ; db_xref "SPD:05/05A07" ; Alias "bqt2" ; synonym "mug18 ||| rec23" ; GO "GO:0000781; chromosome, telomeric region
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032121; attachment of telomeres to spindle pole body
GO:0034613; cellular protein localization
GO:0045132; meiotic chromosome segregation
GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination
GO:0030437; sporulation (sensu Fungi)
GO:0045141; telomere clustering
GO:0045141; telomere clustering" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed in response to mating pheromone; db_xref=PMID:16615890; cv=gene_ex; date=20060517 ||| term=gene expression, promoter contains MCB; db_xref=PMID:16615890; cv=gene_ex; date=20060517 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "bqt2" ; product "bouquet formation protein Bqt2" ;
chromosome1 GeneDB mRNA 2169185 2172127 . - . mRNA SPAC13F5.01c ; systematic_id "SPAC13F5.01c" ; colour "7" ; gene "msh1 ||| SPAC13F5.01c ||| SPAC23C11.18c" ; Alias "msh1" ; db_xref "SPD:47/47D11" ; synonym "SPAC23C11.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR120W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005524; ATP binding
GO:0006298; mismatch repair
GO:0005739; mitochondrion
GO:0030983; mismatched DNA binding
GO:0043504; mitochondrial DNA repair
GO:0008094; DNA-dependent ATPase activity" ; primary_name "msh1" ; product "mitochondrial MutS protein Msh1 (predicted)" ;
chromosome1 GeneDB mRNA 291788 293771 . - . mRNA SPAC1F5.02 ; db_xref "SPD:23/23H01" ; systematic_id "SPAC1F5.02" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YCL043C and YDR518W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005788; endoplasmic reticulum lumen
GO:0006457; protein folding
GO:0003756; protein disulfide isomerase activity
GO:0015035; protein disulfide oxidoreductase activity" ; gene "SPAC1F5.02" ; product "protein disulfide isomerase (predicted)" ; EC_number "5.3.4.1" ;
chromosome1 GeneDB mRNA 1792593 1794972 . - . mRNA SPAC1610.03c ; systematic_id "SPAC1610.03c" ; colour "2" ; db_xref "SPD:38/38D02" ; Alias "crp79" ; synonym "meu5" ; GO "GO:0006406; mRNA export from nucleus
GO:0005737; cytoplasm
GO:0008143; poly(A) binding
GO:0030437; ascospore formation
GO:0048255; mRNA stabilization
GO:0061013; regulation of mRNA catabolic process" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12181330; date=19700101 ||| term=similar to S. pombe SPAC343.07; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=rrm RNA recognition motif; date=19700101" ; primary_name "crp79" ; product "poly(A) binding protein Crp79" ;
chromosome1 GeneDB mRNA 2391964 2394272 . - . mRNA SPAC22H10.11c ; db_xref "SPD:26/26E02" ; systematic_id "SPAC22H10.11c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR223W and YLR223C; date=20080922 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0003714; transcription corepressor activity
GO:0016481; negative regulation of transcription
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0007165; signal transduction
GO:0032569; gene-specific transcription from RNA polymerase II promoter" ; colour "7" ; gene "SPAC22H10.11c" ; product "TOR signaling pathway transcriptional corepressor Crf1 (predicted)" ;
chromosome1 GeneDB mRNA 2921391 2922765 . + . mRNA SPAC513.07 ; db_xref "SPD:15/15A04" ; systematic_id "SPAC513.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL157W and YOL151W and YGL039W and YDR541C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; colour "10" ; gene "SPAC513.07" ; product "flavonol reductase/cinnamoyl-CoA reductase family" ;
chromosome1 GeneDB mRNA 5235682 5238318 . - . mRNA SPAC14C4.05c ; systematic_id "SPAC14C4.05c" ; colour "7" ; db_xref "SPD:29/29C08" ; Alias "heh2" ; synonym "man1 ||| mug61" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR458C and YML034W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Lap-Emerin- Man domain protein; date=20090625 ||| term=LEM domain; date=20090625" ; GO "; nuclear membrane
GO:0000070; mitotic sister chromatid segregation" ; primary_name "heh2" ; product "LEM domain protein Man1, Sad1 interacting factor (predicted)" ; reserved_name "heh2" ;
chromosome1 GeneDB mRNA 3135015 3138590 . + . mRNA SPAC688.11 ; systematic_id "SPAC688.11" ; colour "2" ; gene "end4 ||| SPAC688.11 ||| sla2" ; Alias "end4" ; db_xref "SPD:30/30C09" ; synonym "sla2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization dependent on vesicular traffic; date=20060207 ||| term=localization dependent on Tea1; date=20060207 ||| term=ENTH/VHS domain protein; cv=protein_family; date=20061127 ||| term=orthologous to S. cerevisiae YNL243W; date=19700101 ||| term=target of Ark1/Prk1 family kinases; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human HIP1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; GO "GO:0030479; actin cortical patch
GO:0051285; cell cortex of cell tip
GO:0032153; cell division site
GO:0032153; cell division site
GO:0003779; actin binding
GO:0005546; phosphatidylinositol-4,5-bisphosphate binding
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0034613; cellular protein localization
GO:0030866; cortical actin cytoskeleton organization and biogenesis
GO:0006897; endocytosis
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0031580; membrane raft distribution
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0070314; G1 to G0 transition" ; primary_name "end4" ; product "Huntingtin-interacting protein homolog" ;
chromosome1 GeneDB mRNA 4964590 4966956 . + . mRNA SPAC1B3.17 ; systematic_id "SPAC1B3.17" ; colour "2" ; gene "clr2 ||| SPAC1B3.17" ; Alias "clr2" ; db_xref "SPD:45/45D05" ; GO "GO:0030466; chromatin silencing at silent mating- type cassette
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0016575; histone deacetylation
GO:0016581; NuRD complex
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0006342; chromatin silencing
GO:0005721; centric heterochromatin
GO:0031933; telomeric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0033553; rDNA heterochromatin
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Cryptic Loci Regulator; date=20100727" ; primary_name "clr2" ; product "chromatin silencing protein Clr2" ;
chromosome1 GeneDB mRNA 3675055 3677704 . + . mRNA SPAC15A10.01 ; systematic_id "SPAC15A10.01" ; colour "2" ; gene "atm1 ||| SPAC8C9.18 ||| SPAC15A10.01" ; note "probably regulates cellular iron homeostasis through the transport of mitochondrially synthesised Fe/S clusters (PMID:11493598)" ; Alias "atm1" ; db_xref "SPD:27/27G04" ; synonym "SPAC8C9.18" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YMR301C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0005524; ATP binding
GO:0042626; ATPase activity, coupled to transmembrane movement of substances
GO:0005381; iron ion transmembrane transporter activity
GO:0034599; cellular response to oxidative stress
GO:0006879; iron ion homeostasis
GO:0034755; iron ion transmembrane transport" ; primary_name "atm1" ; product "mitochondrial ABC family iron transporter Atm1" ;
chromosome1 GeneDB mRNA 2990909 2992120 . + . mRNA SPAC31G5.02 ; db_xref "SPD:13/13H09" ; systematic_id "SPAC31G5.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR200W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0031505; fungal-type cell wall organization and biogenesis
GO:0006457; protein folding
GO:0034975; protein folding in the endoplasmic reticulum" ; gene "SPAC31G5.02" ; product "ER chaperone Rot1 (predicted)" ;
chromosome1 GeneDB mRNA 2387733 2389816 . + . mRNA SPAC22H10.09 ; db_xref "SPD:26/26H05" ; systematic_id "SPAC22H10.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC22H10.09" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 652225 653246 . - . mRNA SPAC1D4.09c ; systematic_id "SPAC1D4.09c" ; colour "2" ; gene "SPAC1D4.09c ||| rtf2" ; db_xref "SPD:11/11H02" ; Alias "rtf2" ; GO "GO:0005634; nucleus
GO:0006274; replication termination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rtf2" ; product "replication termination factor Rtf2" ;
chromosome1 GeneDB mRNA 4157907 4160489 . + . mRNA SPAC25B8.03 ; literature "PMID:19286980" ; systematic_id "SPAC25B8.03" ; colour "2" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00561; ||| SPD:25/25B04" ; Alias "psd2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for ethanolamine ; cv=phenotype; db_xref=PMID:198286980; qualifier=deletion; with=GeneDB_Spombe:SPBC16E9.18|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19286980; date=20090727 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPBC16E9.18|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=phenotype, cell morphology, misshapen cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPBC16E9.18|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=orthologous to S. cerevisiae YNL169C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0004609; phosphatidylserine decarboxylase activity
GO:0006656; phosphatidylcholine biosynthesis
GO:0006646; phosphatidylethanolamine biosynthetic process
GO:0008360; regulation of cell shape
GO:0071775; regulation of cell cycle cytokinesis" ; primary_name "psd2" ; product "phosphatidylserine decarboxylase Psd2" ; EC_number "4.1.1.65" ;
chromosome1 GeneDB mRNA 5428237 5431485 . + . mRNA SPAC29B12.08 ; db_xref "SPD:34/34F07" ; systematic_id "SPAC29B12.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, gene structure updated; cv=warning; date=20091214" ; colour "8" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2668061 2669050 . - . mRNA SPAC4F8.06 ; db_xref "SPD:03/03G09" ; systematic_id "SPAC4F8.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; gene "SPAC4F8.06" ; product "mitochondrial ribosomal protein subunit S12 (predicted)" ;
chromosome1 GeneDB mRNA 4072160 4074960 . + . mRNA SPAC19G12.14 ; systematic_id "SPAC19G12.14" ; colour "2" ; gene "its3 ||| SPAC19G12.14" ; db_xref "SPD:28/28E06" ; Alias "its3" ; GO "GO:0030428; cell septum
GO:0005886; plasma membrane
GO:0016308; 1-phophatidylinositol-4-phosphate 5- kinase activity
GO:0006651; diacylglycerol biosynthetic process
GO:0046488; phosphatidylinositol metabolism
GO:0071775; regulation of cell cycle cytokinesis
GO:0071775; regulation of cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10950958; date=19700101 ||| term=orthologous to S. cerevisiae YDR208W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:9873063; date=20090213 ||| term=target of Cki1; db_xref=PMID:9873063; date=20091231 ||| term=complementation, functionally complemented by S. cerevisiae YDR208W; db_xref=PMID:9873063; date=20100923" ; primary_name "its3" ; product "1-phosphatidylinositol-4-phosphate 5-kinase Its3" ; EC_number "2.7.1.68" ;
chromosome1 GeneDB mRNA 1482480 1484752 . + . mRNA SPAC9.10 ; systematic_id "SPAC9.10" ; colour "2" ; gene "SPAC9.10 ||| thi9" ; note "the functionally complementing transporters are not orthologous" ; Alias "thi9" ; db_xref "SPD:36/36C04" ; GO "GO:0005886; plasma membrane
GO:0015234; high-affinity thiamine:hydrogen ion symporter activity
GO:0015234; thiamin transmembrane transporter activity
GO:0071934; thiamin transmembrane transport
GO:0071934; thiamin transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "thi9" ; product "thiamine transporter Thi9" ;
chromosome1 GeneDB mRNA 188377 189984 . + . mRNA SPAC13G6.08 ; db_xref "SPD:25/25G06" ; systematic_id "SPAC13G6.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Cdc20/Fizzy subfamily; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=similar to S. pombe SPCC1620.04C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC13G6.08" ; product "Cdc20/Fizzy subfamily WD repeat protein" ;
chromosome1 GeneDB mRNA 51988 53858 . + . mRNA SPAC977.10 ; systematic_id "SPAC977.10" ; colour "2" ; gene "sod2 ||| SPAC977.10" ; Alias "sod2" ; db_xref "SPD:50/50G04" ; GO "GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0005886; plasma membrane
GO:0006883; sodium ion homeostasis
GO:0006814; sodium ion transport
GO:0015385; sodium:hydrogen antiporter activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR138W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1314171; date=20080227 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "sod2" ; product "plasma membrane sodium ion/proton antiporter Sod2" ;
chromosome1 GeneDB mRNA 4435617 4435913 . - . mRNA SPAC9E9.02 ; systematic_id "SPAC9E9.02" ; colour "6" ; gene "SPAC9E9.02" ; product "dubious" ;
chromosome1 GeneDB mRNA 4299757 4301288 . + . mRNA SPAC25G10.03 ; systematic_id "SPAC25G10.03" ; colour "2" ; db_xref "SPD:14/14E02" ; Alias "zip1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, ubiquitinated; db_xref=PMID:15660136; cv=pt_mod; date=20061128 ||| term=bZIP (basic leucine zipper) transcription factor family; cv=protein_family; date=20061128 ||| term=orthologous to S. cerevisiae YNL103W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15829570; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005515; protein binding
GO:0071243; cellular response to arsenic
GO:0071276; cellular response to cadmium ion
GO:0071276; cellular response to cadmium ion
GO:0070301; cellular response to hydrogen peroxide
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding" ; primary_name "zip1" ; product "transcription factor Zip1" ;
chromosome1 GeneDB mRNA 4909426 4910910 . - . mRNA SPAPB8E5.02c ; systematic_id "SPAPB8E5.02c" ; colour "2" ; gene "rpn502 ||| rpn5-b ||| SPAPB8E5.02c ||| rpn5" ; note "expression level is tightly controlled so that deletion of either copy is compensated (PMID 12783882)" ; Alias "rpn502" ; synonym "rpn5 ||| rpn5-b" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL147W; date=19700101 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; nuclear periphery
GO:0000502; proteasome complex (sensu Eukaryota)
GO:0005515; protein binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0043248; proteasome assembly
GO:0031144; proteasome localization
GO:0000278; mitotic cell cycle" ; primary_name "rpn502" ; product "19S proteasome regulatory subunit Rpn502" ;
chromosome1 GeneDB mRNA 1690272 1691593 . + . mRNA SPAC824.04 ; systematic_id "SPAC824.04" ; colour "7" ; gene "SPAC824.04" ; note "swd2.2 ||| S. pombe paralogues are functionally diverged, S. cerevisiae YKL018W is a member of both CPF and SET1 complex (PMID 14617822)" ; db_xref "SPD:15/15D05" ; GO "GO:0006378; mRNA polyadenylation
GO:0006379; mRNA cleavage
GO:0005847; mRNA cleavage and polyadenylation specificity factor complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "WD repeat protein (predicted)" ;
chromosome1 GeneDB mRNA 1488698 1489740 . - . mRNA SPAC9.13c ; systematic_id "SPAC9.13c" ; colour "2" ; gene "cwf16 ||| SPAC9.13c ||| SPAPJ735.01c" ; Alias "cwf16" ; db_xref "SPD:10/10D05" ; synonym "SPAPJ735.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL095W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005515; protein binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; primary_name "cwf16" ; product "splicing factor (predicted)" ;
chromosome1 GeneDB mRNA 4906898 4909314 . + . mRNA SPAC19B12.13 ; systematic_id "SPAC19B12.13" ; colour "7" ; gene "cox1102 ||| cox11-b ||| cox11 ||| SPAPB8E5.01 ||| SPAC19B12.13" ; Alias "cox1102" ; obsolete_name "cox11" ; synonym "cox11 ||| cox11-b ||| SPAPB8E5.01" ; GO "GO:0031304; intrinsic to mitochondrial inner membrane
GO:0005759; mitochondrial matrix
GO:0005763; mitochondrial small ribosomal subunit
GO:0005507; copper ion binding
GO:0008168; methyltransferase activity
GO:0008535; cytochrome c oxidase complex assembly
GO:0032543; mitochondrial translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, proteolytic cleavage; evidence=ISS; cv=pt_mod; date=20060825 ||| term=genome organization, tandem fusion protein; cv=genome_org; evidence=ISS; date=20060825 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; evidence=ISS; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; evidence=ISS; date=20060825 ||| term=target of TIM23 translocase; evidence=ISS; date=20060825 ||| term=orthologous to S. cerevisiae YPL132W (C-term); date=19700101 ||| term=orthologous to S. cerevisiae YKL155C (N-term); date=19700101" ; primary_name "cox1102" ; product "fusion cytochrome c oxidase assembly protein Cox1102, mitochondrial ribosomal protein Rsm2202 (predicted)" ;
chromosome1 GeneDB mRNA 1772925 1774203 . + . mRNA SPAC17A5.11 ; systematic_id "SPAC17A5.11" ; colour "2" ; db_xref "SPD:20/20E02" ; Alias "rec12" ; synonym "spo11" ; GO "GO:0000228; nuclear chromosome
GO:0005524; ATP binding
GO:0003677; DNA binding
GO:0016889; endodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0045143; homologous chromosome segregation
GO:0042138; meiotic DNA double-strand break formation
GO:0007131; meiotic recombination
GO:0045144; meiotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:8005432; date=19700101 ||| term=orthologous to S. cerevisiae YHL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "rec12" ; product "endonuclease Rec12" ;
chromosome1 GeneDB mRNA 3791831 3795856 . - . mRNA SPAC1556.01c ; systematic_id "SPAC1556.01c" ; colour "2" ; db_xref "SPD:39/39D10" ; Alias "rad50" ; synonym "SPAP4C9.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YNL250W; date=19700101 ||| term=disease associated, cancer; date=20080110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12944481; date=20100705 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; GO "GO:0030870; Mre11 complex
GO:0000790; nuclear chromatin
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0003677; DNA binding
GO:0000077; DNA damage checkpoint
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0000724; double-strand break repair via homologous recombination
GO:0000734; gene conversion at mating-type locus, DNA repair synthesis
GO:0031573; intra-S DNA damage checkpoint
GO:0042138; meiotic DNA double-strand break formation
GO:0007131; meiotic recombination
GO:0000723; telomere maintenance" ; primary_name "rad50" ; product "DNA repair protein Rad50" ;
chromosome1 GeneDB mRNA 767480 770176 . + . mRNA SPAC4G8.04 ; db_xref "SPD:46/46H01" ; systematic_id "SPAC4G8.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog (cannot be distinguished); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005096; GTPase activator activity" ; gene "SPAC4G8.04" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB mRNA 925111 926245 . - . mRNA SPAC1687.12c ; systematic_id "SPAC1687.12c" ; colour "7" ; gene "coq4 ||| SPAC1687.12c" ; private "cofactor metabolic process hardwird for booleean query" ; Alias "coq4" ; db_xref "SPD:15/15F07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006744; ubiquinone biosynthesis" ; primary_name "coq4" ; product "ubiquinone biosynthesis protein Coq4 (predicted)" ;
chromosome1 GeneDB mRNA 3950520 3951653 . - . mRNA SPAC2F3.14c ; systematic_id "SPAC2F3.14c" ; colour "10" ; gene "SPAC2F3.14c" ; db_xref "SPD:14/14E08" ; Alias "saf2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "saf2" ; product "conserved fungal protein" ; reserved_name "saf2" ;
chromosome1 GeneDB mRNA 5137349 5138112 . - . mRNA SPAC29A4.05 ; systematic_id "SPAC29A4.05" ; colour "2" ; gene "cam2 ||| SPAC29A4.05" ; Alias "cam2" ; db_xref "SPD:03/03E11" ; GO "GO:0005509; calcium ion binding
GO:0045160; myosin I complex
GO:0030048; actin filament-based movement
GO:0005515; protein binding
GO:0030437; sporulation (sensu Fungi)
GO:0051286; cell tip
GO:0031097; medial ring
GO:0005628; forespore membrane
GO:0043332; mating projection tip
GO:0032120; prospore membrane formation
GO:0005737; cytoplasm
GO:0005938; cell cortex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:17202724; date=20070115 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17202724; date=20070115 ||| term=calmodulin family; qualifier=predicted; date=19700101 ||| term=EF hand; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cam2" ; product "myosin I light chain Cam2" ; reserved_name "cam2" ;
chromosome1 GeneDB mRNA 5132013 5133056 . - . mRNA SPAC29A4.09 ; db_xref "SPD:08/08C01" ; systematic_id "SPAC29A4.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR412W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006364; rRNA processing
GO:0004527; exonuclease activity
GO:0000967; rRNA 5'-end processing" ; gene "SPAC29A4.09" ; product "rRNA exonuclease Rrp17 (predicted)" ;
chromosome1 GeneDB mRNA 108908 109147 . - . mRNA SPAC11D3.01c ; db_xref "SPD:01/01B06" ; systematic_id "SPAC11D3.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa conidiation-specific protein 6; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC869.09 and SPAC22G7.11C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC11D3.01c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 326602 328087 . + . mRNA SPAC12G12.11c ; db_xref "SPD:22/22C12" ; systematic_id "SPAC12G12.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL191C and YGL082W; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human FAM63A and FAM63B ortholog; date=20100718" ; colour "10" ; GO "GO:0005515; protein binding" ; gene "SPAC12G12.11c" ; product "DUF544 family protein" ;
chromosome1 GeneDB mRNA 4367585 4372712 . - . mRNA SPAC23D3.13c ; db_xref "SPD:31/31A10" ; systematic_id "SPAC23D3.13c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YNL297C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005768; endosome
GO:0006897; endocytosis
GO:0006886; intracellular protein transport
GO:0005085; guanyl-nucleotide exchange factor activity
GO:0006623; protein targeting to vacuole" ; gene "SPAC23D3.13c" ; product "guanyl-nucleotide exchange factor (predicted)" ;
chromosome1 GeneDB mRNA 321924 324016 . + . mRNA SPAC12G12.13c ; systematic_id "SPAC12G12.13c" ; colour "2" ; gene "cid14 ||| SPAC12G12.13c" ; db_xref "SPD:26/26B12" ; Alias "cid14" ; GO "GO:0031499; TRAMP complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0004652; polynucleotide adenylyltransferase activity
GO:0043630; ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolism
GO:0007000; nucleolus organization and biogenesis
GO:0031125; rRNA 3'-end processing
GO:0016075; rRNA catabolism
GO:0016077; snoRNA catabolism
GO:0016078; tRNA catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18025105; date=20090110 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; db_xref=PMID:16478992; date=20060420 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16478992; date=19700101 ||| term=orthologous to S. cerevisiae YOL115W and YNL299W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090716 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:16478992; date=20101102 ||| term=phenotype, meiosis defects; db_xref=PMID:16478992; date=20101102" ; primary_name "cid14" ; product "poly(A) polymerase Cid14" ; EC_number "2.7.7.1" ;
chromosome1 GeneDB mRNA 479280 482361 . - . mRNA SPAC24H6.05 ; systematic_id "SPAC24H6.05" ; colour "2" ; gene "cdc25 ||| sal2 ||| SPAC24H6.05" ; Alias "cdc25" ; db_xref "SPD:40/40F12" ; synonym "sal2" ; clustalx_file "clustalx/c24H6.tab.seq.00001.out" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004725; protein tyrosine phosphatase activity
; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0023034; intracellular signaling cascade
GO:0031662; positive regulation of cyclin- dependent protein kinase activity during G2/M
GO:0006470; protein amino acid dephosphorylation
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0008361; regulation of cell size" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:*****; date=20100630 ||| term=modification, ubiquitinated; db_xref=PMID:8635463; cv=pt_mod; date=20081001 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=orthologous to S. cerevisiae YMR036C; date=19700101 ||| term=target is Cdc2; qualifier=dephosphorylates|activates; db_xref=PMID:1819507; date=20090826 ||| term=target of Srk1; qualifier=phosphorylated_by; db_xref=PMID:15629716; date=20100224 ||| term=phenotype, cell morphology, small cells; qualifier=overexpression; db_xref=PMID:3955656; date=20101124" ; primary_name "cdc25" ; product "M phase inducer phosphatase Cdc25" ; EC_number "3.1.3.48" ;
chromosome1 GeneDB mRNA 1266232 1267771 . + . mRNA SPAC1420.03 ; systematic_id "SPAC1420.03" ; colour "2" ; gene "rpn501 ||| rpn5-a ||| rpn5 ||| SPAC1420.03" ; note "expression level is tightly controlled so that deletion of either copy is compensated (PMID 12783882)" ; Alias "rpn501" ; db_xref "SPD:21/21D01" ; synonym "rpn5-a ||| rpn5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL147W; date=19700101 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "; nuclear periphery
GO:0000502; proteasome complex (sensu Eukaryota)
GO:0005515; protein binding
GO:0000278; mitotic cell cycle
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0043248; proteasome assembly
GO:0031144; proteasome localization" ; primary_name "rpn501" ; product "19S proteasome regulatory subunit Rpn501" ;
chromosome1 GeneDB mRNA 278587 281226 . - . mRNA SPAC1F5.06 ; systematic_id "SPAC1F5.06" ; colour "7" ; gene "SPAC1F5.06" ; db_xref "SPD:29/29C12" ; Alias "lsh1" ; GO "GO:0034620; cellular response to unfolded protein
GO:0005788; endoplasmic reticulum lumen
GO:0061077; chaperone-mediated protein folding
GO:0000774; adenyl-nucleotide exchange factor activity
GO:0031204; posttranslational protein targeting to membrane, translocation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, chaperone; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YKL073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "lsh1" ; product "ER heat shock protein Lhs1 (predicted)" ; reserved_name "lsh1" ;
chromosome1 GeneDB mRNA 4942676 4944022 . + . mRNA SPAC1B3.08 ; db_xref "SPD:20/20D03" ; systematic_id "SPAC1B3.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PINT/PCI domain; qualifier=inferred from context; date=19700101 ||| term=IQ domain; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YJR084W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000338; protein deneddylation" ; gene "SPAC1B3.08" ; product "COP9 signalosome complex subunit 12 (predicted)" ;
chromosome1 GeneDB mRNA 2994927 2995915 . - . mRNA SPAC31G5.05c ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00040; ||| KEGG:MAP00710; ||| SPD:08/08G07" ; systematic_id "SPAC31G5.05c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL121C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009052; pentose-phosphate shunt, non-oxidative branch
GO:0004750; ribulose-phosphate 3-epimerase activity
GO:0005829; cytosol" ; gene "SPAC31G5.05c" ; product "ribulose phosphate 3-epimerase (predicted)" ; EC_number "5.1.3.1" ;
chromosome1 GeneDB mRNA 5234088 5235521 . + . mRNA SPAC14C4.04 ; systematic_id "SPAC14C4.04" ; colour "12" ; gene "B22918-2 ||| SPAC14C4.04" ; db_xref "SPD:10/10B12" ; Alias "B22918-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, identified in S. pombe only; date=20081110" ; primary_name "B22918-2" ; product "hypothetical protein" ;
chromosome1 GeneDB mRNA 2429086 2430626 . - . mRNA SPAC6B12.10c ; systematic_id "SPAC6B12.10c" ; colour "2" ; gene "spp1 ||| pri1 ||| SPAC6B12.10c" ; Alias "spp1" ; db_xref "SPD:23/23C12" ; synonym "pri1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:11160827; date=20100708 ||| term=phenotype, cut; qualifier=ts; db_xref=PMID:11160827; date=20100708 ||| term=orthologous to S. cerevisiae YIR008C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000723; telomere maintenance
GO:0000790; nuclear chromatin
GO:0006269; DNA replication, synthesis of RNA primer
GO:0043596; nuclear replication fork
GO:0005658; alpha DNA polymerase:primase complex
GO:0003896; DNA primase activity" ; primary_name "spp1" ; product "DNA primase catalytic subunit Spp1" ;
chromosome1 GeneDB mRNA 3692824 3694971 . + . mRNA SPAC15A10.08 ; systematic_id "SPAC15A10.08" ; colour "2" ; gene "ain1 ||| SPAC15A10.08" ; Alias "ain1" ; db_xref "SPD:46/46D09" ; GO "GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0003779; actin binding
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0051017; actin filament bundle formation
GO:0030674; protein binding, bridging
GO:0051764; actin cross link formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=calponin homology (CH) domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ain1" ; product "alpha-actinin" ;
chromosome1 GeneDB mRNA 3389716 3391615 . - . mRNA SPAC959.03c ; db_xref "SPD:45/45B02" ; systematic_id "SPAC959.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER082C; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0030515; snoRNA binding" ; gene "SPAC959.03c" ; product "U3 snoRNP-associated protein Utp7 (predicted)" ;
chromosome1 GeneDB mRNA 979560 981101 . - . mRNA SPAC222.16c ; systematic_id "SPAC222.16c" ; colour "7" ; gene "csn3 ||| SPAC222.16c ||| SPAC821.02c" ; Alias "csn3" ; db_xref "SPD:21/21D10" ; synonym "SPAC821.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008180; signalosome
GO:0010388; cullin deneddylation" ; primary_name "csn3" ; product "COP9/signalosome complex subunit Csn3 (predicted)" ;
chromosome1 GeneDB mRNA 5099365 5099986 . - . mRNA SPAC1250.02 ; systematic_id "SPAC1250.02" ; colour "8" ; gene "SPAC1250.02 ||| mug95" ; db_xref "SPD:42/42E03" ; Alias "mug95" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug95" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 333214 333441 . + . mRNA SPAC12G12.17 ; db_xref "PMID:18488015" ; systematic_id "SPAC12G12.17" ; controlled_curation "term=orthologous to S. cerevisiae YJL205C; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "7" ; GO "GO:0006887; exocytosis" ; gene "SPAC12G12.17" ; product "non-classical export protein 1 (predicted)" ;
chromosome1 GeneDB mRNA 2354122 2355110 . + . mRNA SPAC17G8.07 ; systematic_id "SPAC17G8.07" ; colour "2" ; gene "SPAC17G8.07 ||| yaf9" ; Alias "yaf9" ; db_xref "SPD:07/07E08" ; GO "GO:0035267; NuA4 histone acetyltransferase complex
GO:0000812; Swr1 complex
GO:0006281; DNA repair
GO:0006342; chromatin silencing
GO:0043486; histone exchange
GO:0016573; histone acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL107W; date=19700101 ||| term=human YEATS4 and MLLT3 ortholog; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=histone fold; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230" ; primary_name "yaf9" ; product "YEATS family histone acetyltransferase subunit Yaf9" ;
chromosome1 GeneDB mRNA 4601425 4603346 . - . mRNA SPAC12B10.16c ; systematic_id "SPAC12B10.16c" ; colour "10" ; gene "SPAC12B10.16c ||| mug157" ; db_xref "SPD:49/49B01" ; Alias "mug157" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "mug157" ; product "conserved protein Mug157" ;
chromosome1 GeneDB mRNA 560824 562166 . - . mRNA SPAC2F7.14c ; db_xref "SPD:14/14D02" ; systematic_id "SPAC2F7.14c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0006364; 35S primary transcript processing
GO:0061013; nuclear-transcribed mRNA catabolism" ; gene "SPAC2F7.14c" ; product "exosome subunit Rrp4 (predicted)" ;
chromosome1 GeneDB mRNA 1218321 1218887 . - . mRNA SPAC10F6.07c ; systematic_id "SPAC10F6.07c" ; colour "8" ; gene "SPAC10F6.07c ||| mug94" ; db_xref "SPD:05/05H12" ; Alias "mug94" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug94" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2194842 2199297 . + . mRNA SPAC1783.05 ; systematic_id "SPAC1783.05" ; colour "2" ; gene "hrp1 ||| chd1 ||| SPAC1783.05" ; Alias "hrp1" ; db_xref "SPD:48/48G01" ; synonym "chd1" ; GO "GO:0000779; condensed chromosome, pericentric region
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0004003; ATP-dependent DNA helicase activity
GO:0003677; DNA binding
GO:0008094; DNA-dependent ATPase activity
GO:0005515; protein binding
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0048096; chromatin-mediated maintenance of transcription
GO:0007076; mitotic chromosome condensation
GO:0035067; negative regulation of histone acetylation
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0006369; transcription termination from RNA polymerase II promoter
GO:0060303; regulation of nucleosome density" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=chromodomain protein; date=19700101 ||| term=orthologous to S. cerevisiae YER164W; date=19700101 ||| term=misc, targets correlated with Clr3 and Sir2 targets; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=misc, overlapping genome wide occupancy in coding regions Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=misc, overlapping genome wide occupancy in promoters Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Helicase- Related protein from S. Pombe; cv=name_description; date=20100126 ||| term=human CHD1 and CHD2 ortholog; date=20100908" ; primary_name "hrp1" ; product "ATP-dependent DNA helicase Hrp1" ;
chromosome1 GeneDB mRNA 4836218 4837430 . + . mRNA SPAC4F10.04 ; db_xref "SPD:15/15C06" ; systematic_id "SPAC4F10.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL153W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008601; protein phosphatase type 2A regulator activity
GO:0006282; regulation of DNA repair
GO:0060236; regulation of mitotic spindle organization" ; gene "SPAC4F10.04" ; product "protein phosphatase type 2A, intrinsic regulator (predicted)" ;
chromosome1 GeneDB mRNA 3138722 3139300 . - . mRNA SPAC688.12c ; db_xref "SPD:04/04H10" ; systematic_id "SPAC688.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC688.12c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3855385 3857888 . - . mRNA SPAC1071.01c ; systematic_id "SPAC1071.01c" ; colour "2" ; gene "SPAC4H3.15c ||| SPAC1071.01c ||| pta1" ; Alias "pta1" ; db_xref "SPD:27/27D12" ; synonym "SPAC4H3.15c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=20070403 ||| term=orthologous to S. cerevisiae YAL043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0008033; tRNA processing
GO:0006378; mRNA polyadenylation
GO:0006379; mRNA cleavage" ; primary_name "pta1" ; product "mRNA cleavage and polyadenylation specificity factor complex subunit Pta1" ;
chromosome1 GeneDB mRNA 4365700 4365852 . + . mRNA SPAC23D3.16 ; db_xref "PMID:18488015" ; systematic_id "SPAC23D3.16" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "8" ; gene "SPAC23D3.16" ; product "sequence orphan" ; note "intron from Solexa transread data" ;
chromosome1 GeneDB mRNA 1067031 1068660 . - . mRNA SPAC1A6.01c ; systematic_id "SPAC1A6.01c" ; colour "7" ; gene "SPAC23C4.20c ||| SPAC1A6.01c" ; Alias "SPAC23C4.20c" ; db_xref "SPD:44/44E10" ; synonym "SPAC23C4.20c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C2HC5 type; date=19700101 ||| term=orthologous to S. cerevisiae YKR023W; date=19700101 ||| term=zinc finger protein; date=20080527 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TRIP-4 ortholog; date=20091107 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0008270; zinc ion binding
GO:0032569; gene specific transcription from RNA polymerase II promoter
GO:0005634; nucleus
GO:0003713; trancription coactivator activity" ; primary_name "SPAC23C4.20c" ; product "human thyroid receptor interacting protein homolog, transcription coactivator (predicted)" ;
chromosome1 GeneDB mRNA 5122934 5128986 . - . mRNA SPAC29A4.11 ; systematic_id "SPAC29A4.11" ; colour "2" ; gene "rga3 ||| SPAC29A4.11" ; Alias "rga3" ; db_xref "SPD:47/47D10" ; GO "GO:0000935; barrier septum
GO:0051285; cell cortex of cell tip
GO:0005100; Rho GTPase activator activity
GO:0032319; regulation of Rho GTPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:11737264; date=20100917 ||| term=LIM domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR127W and YDR379W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CHN1 and CHN2 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "rga3" ; product "Rho-type GTPase activating protein Rga3" ;
chromosome1 GeneDB mRNA 221880 223917 . - . mRNA SPAC24B11.11c ; systematic_id "SPAC24B11.11c" ; colour "2" ; gene "sid2 ||| SPAC24B11.11c" ; db_xref "SPD:45/45H10" ; Alias "sid2" ; GO "GO:0034973; Sid2-Mob1 complex
GO:0031097; medial ring
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0071775; regulation of cell cycle cytokinesis
GO:0006468; protein amino acid phosphorylation
GO:0031028; septation initiation signaling
GO:0061167; maintenance of ER location involved in ER polarization at cell division site" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9649519; date=19700101 ||| term=phenotype, septum initiation defective; cv=phenotype; date=20090729 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9649519; date=20100727 ||| term=phenotype, multinucleate; db_xref=PMID:9649519; date=20100727 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YGR092W and YPR111W; date=19700101 ||| term=Ndr kinase/myotonic dystrophy kinase/cot1/warts family; db_xref=PMID:18411246|PMID:18397994; date=20080416 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15060153; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, Septum Initiation Defective; cv=name_description; date=20090729" ; primary_name "sid2" ; product "NDR kinase Sid2" ;
chromosome1 GeneDB mRNA 1277443 1279092 . - . mRNA SPAPB17E12.07c ; Alias "sen2" ; systematic_id "SPAPB17E12.07c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005741; mitochondrial outer membrane
GO:0000214; tRNA-intron endonuclease complex
GO:0000213; tRNA-intron endonuclease activity
GO:0000379; tRNA-type intron splice site recognition and cleavage" ; gene "SPAPB17E12.07c ||| sen2" ; primary_name "sen2" ; product "tRNA-splicing endonuclease subunit catalytic subunit Sen2 (predicted)" ;
chromosome1 GeneDB mRNA 244321 247016 . - . mRNA SPAC806.06c ; db_xref "SPD:17/17B10" ; systematic_id "SPAC806.06c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000309; nicotinamide-nucleotide adenylyltransferase activity
GO:0009435; NAD biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR328W and YGR010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC806.06c" ; product "nicotinamide mononucleotide (NMN) adenylyltransferase (predicted)" ; EC_number "2.7.7.1" ;
chromosome1 GeneDB mRNA 4164228 4165883 . - . mRNA SPAC25B8.06c ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:44/44F01" ; systematic_id "SPAC25B8.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004828; serine-tRNA ligase activity
GO:0006434; seryl-tRNA aminoacylation" ; gene "SPAC25B8.06c" ; product "mitochondrial serine-tRNA ligase (predicted)" ; EC_number "6.1.1.11" ;
chromosome1 GeneDB mRNA 4954578 4955621 . + . mRNA SPAC1B3.14 ; systematic_id "SPAC1B3.14" ; colour "2" ; gene "vma3 ||| SPAC1B3.14" ; Alias "vma3" ; db_xref "SPD:10/10C12" ; GO "GO:0000220; vacuolar protein-transporting V-type ATPase, V0 domain
GO:0046961; hydrogen ion transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0006897; endocytosis
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "vma3" ; product "V-type ATPase V0 subunit c (proteolipid subunit)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB mRNA 1178883 1179983 . - . mRNA SPAC22A12.12c ; db_xref "SPD:08/08E12" ; systematic_id "SPAC22A12.12c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL142W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0000176; nuclear exosome (RNase complex)
GO:0000177; cytoplasmic exosome (RNase complex)
GO:0061013; nuclear-transcribed mRNA catabolism" ; gene "SPAC22A12.12c" ; product "exosome subunit Rrp40 (predicted)" ;
chromosome1 GeneDB mRNA 2689677 2691120 . + . mRNA SPAC644.09 ; db_xref "SPD:44/44B10" ; systematic_id "SPAC644.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0008784; alanine racemase activity
GO:0030170; pyridoxal phosphate binding
GO:0006520; amino acid metabolism" ; gene "SPAC644.09" ; product "alanine racemase (predicted)" ;
chromosome1 GeneDB mRNA 2558600 2561801 . - . mRNA SPAC4A8.08c ; systematic_id "SPAC4A8.08c" ; colour "2" ; obsolete_name "vas1" ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:47/47H03" ; Alias "vrs2" ; synonym "vas2 ||| ValRS2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR094W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, inviable; db_xref=PMID:20106903; cv=phenotype; date=20100201 ||| term=protein sequence feature, mitochondrial signal sequence; cv=sequence_feature; residue=1-32; db_xref=PMID:20106903; date=20100302" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004832; valine-tRNA ligase activity
GO:0006438; valyl-tRNA aminoacylation
GO:0032543; mitochondrial translation" ; primary_name "vrs2" ; product "mitochondrial valine-tRNA ligase Vrs2/Vas2" ; EC_number "6.1.1.9" ;
chromosome1 GeneDB mRNA 4926538 4926872 . + . mRNA SPAPB8E5.10 ; systematic_id "SPAPB8E5.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=similar to N. crassa B24N11.210; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090303" ; colour "10" ; GO "GO:0007126; meiosis" ; gene "SPAPB8E5.10" ; product "conserved fungal protein, with meiosis specific splicing" ; note "candidate ortholog S. cerevisiae YJL062W-A" ;
chromosome1 GeneDB mRNA 3400542 3401053 . + . mRNA SPAC959.08 ; systematic_id "SPAC959.08" ; colour "7" ; gene "rpl2102 ||| rpl21-2 ||| rpl21 ||| SPAC959.08" ; Alias "rpl2102" ; db_xref "SPD:04/04E01" ; synonym "rpl21-2 ||| rpl21" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR191W and YPL079W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl2102" ; product "60S ribosomal protein L21 (predicted)" ;
chromosome1 GeneDB mRNA 706844 707473 . - . mRNA SPAC22F3.02 ; systematic_id "SPAC22F3.02" ; colour "2" ; gene "atf31 ||| SPAC22F3.02" ; Alias "atf31" ; db_xref "SPD:42/42E08" ; GO "GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016563; transcriptional activator activity
GO:0040020; regulation of meiosis
GO:0010673; positive regulation of transcription from RNA polymerase II promoter, meiotic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bZIP (basic leucine zipper) transcription factor family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080721 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:12161753; date=20090110" ; primary_name "atf31" ; product "transcription factor Atf31" ;
chromosome1 GeneDB mRNA 4414824 4415174 . + . mRNA SPAC29E6.07 ; systematic_id "SPAC29E6.07" ; colour "8" ; gene "SPAC30.11 ||| SPAC29E6.07" ; Alias "SPAC30.11" ; db_xref "SPD:02/02C02" ; synonym "SPAC30.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; GO "GO:0007126; meiosis
GO:0007126; meiosis
GO:0009897; external side of plasma membrane" ; primary_name "SPAC30.11" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 112709 113309 . - . mRNA SPAC11D3.04c ; db_xref "SPD:02/02H09" ; systematic_id "SPAC11D3.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; GO "GO:0009975; cyclase activity" ; gene "SPAC11D3.04c" ; product "SnoaL" ;
chromosome1 GeneDB mRNA 546664 548562 . - . mRNA SPAC2F7.08c ; systematic_id "SPAC2F7.08c" ; colour "2" ; gene "SPAC2F7.08c ||| snf5" ; Alias "snf5" ; db_xref "SPD:26/26E11" ; GO "GO:0016514; SWI/SNF complex
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin
GO:0010811; positive regulation of cell substrate adhesion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, sensitive to cold; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to 2-DOG; db_xref=PMID:18622392; qualifier=deletion; cv=phenotype; date=20080729 ||| term=phenotype, adhesion defects, cell-substrate adhesion, abolished; qualifier=deletion; db_xref=PMID:19542312; date=20090706 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706 ||| term=orthologous to S. cerevisiae YBR289W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=human SMARCB1 ortholog; date=20100218 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110 ||| term=gene expression, transcriptionally represses genes involved in glucose uptake; db_xref=PMID:18622392; cv=gene_ex; date=20080729 ||| term=gene expression, transcriptionally represses genes involved in iron uptake; db_xref=PMID:18622392; cv=gene_ex; date=20080729" ; primary_name "snf5" ; product "SWI/SNF complex subunit Snf5" ;
chromosome1 GeneDB mRNA 823527 826330 . + . mRNA SPAC2G11.09 ; db_xref "SPD:28/28H07" ; systematic_id "SPAC2G11.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR241W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC2G11.09" ; product "DUF221 family protein" ;
chromosome1 GeneDB mRNA 1260335 1262985 . - . mRNA SPAC1420.01c ; systematic_id "SPAC1420.01c" ; colour "7" ; gene "SPAC56E4.08c ||| SPAC1420.01c" ; Alias "SPAC56E4.08c" ; db_xref "SPD:36/36D01" ; synonym "SPAC56E4.08c" ; GO "GO:0031930; mitochondrial signaling pathway
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL076W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "SPAC56E4.08c" ; product "DUF1752 family protein, involved in regulation of transcription (predicted)" ;
chromosome1 GeneDB mRNA 2866063 2867656 . - . mRNA SPAC8F11.08c ; db_xref "SPD:43/43H12" ; systematic_id "SPAC8F11.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0007126; meiosis
GO:0007126; meiosis
GO:0031233; intrinsic to external side of plasma membrane" ; gene "SPAC8F11.08c" ; product "esterase/lipase (predicted)" ;
chromosome1 GeneDB mRNA 3479152 3481242 . + . mRNA SPAC328.03 ; systematic_id "SPAC328.03" ; colour "2" ; gene "tps1 ||| SPAC328.03" ; Alias "tps1" ; db_xref "SPD:25/25A05" ; GO "GO:0003825; alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0005515; protein binding
GO:0006970; response to osmotic stress
GO:0033554; cellular response to stress
GO:0030437; sporulation (sensu Fungi)
GO:0005992; trehalose biosynthetic process" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:8021171; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR126C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "tps1" ; product "alpha,alpha-trehalose-phosphate synthase [UDP- forming]" ; EC_number "2.4.1.15" ;
chromosome1 GeneDB mRNA 4209273 4212357 . - . mRNA SPAC694.06c ; systematic_id "SPAC694.06c" ; colour "2" ; db_xref "SPD:47/47G10" ; Alias "mrc1" ; GO "GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000403; Y-form DNA binding
GO:0005515; protein binding
GO:0005515; protein binding
; protein binding
GO:0043539; protein serine/threonine kinase activator activity
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0031573; intra-S DNA damage checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, DNA damage checkpoint defects, S-phase; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=orthologous to S. cerevisiae YCL061C; date=19700101 ||| term=ankyrin repeat protein; qualifier=inferred from context; date=19700101 ||| term=human Claspin ortholog; db_xref=PMID:11715016; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Mediator of Replication Checkpoint; cv=name_description; date=20090729 ||| term=modification, phosphorylated; residue=T645; cv=pt_mod; db_xref=PMID:14585996; date=20090213 ||| term=target of Tel1; qualifier=phosphorylated_by; db_xref=PMID:14585996; date=19700101 ||| term=target of Rad3; qualifier=phosphorylated_by; db_xref=PMID:14585996; date=19700101 ||| term=target is Cds1; qualifier=activates; date=20100427" ; primary_name "mrc1" ; product "mediator of replication checkpoint 1" ;
chromosome1 GeneDB mRNA 2932797 2935087 . + . mRNA SPAC2E1P3.04 ; systematic_id "SPAC2E1P3.04" ; colour "2" ; gene "SPAC2E1P3.04" ; Alias "cao1" ; db_xref "SPD:37/37E06" ; synonym "spao1" ; GO "GO:0006878; cellular copper ion homeostasis
GO:0005829; cytosol
GO:0008131; amine oxidase activity
GO:0005507; copper ion binding
GO:0005515; protein binding
GO:0009310; amine catabolic process
GO:0034641; cellular ntirogen compound metabolic process
GO:0048038; quinone binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "cao1" ; product "copper amine oxidase Cao1" ; EC_number "1.4.3.-" ;
chromosome1 GeneDB mRNA 1605134 1607114 . - . mRNA SPAC23H4.02 ; systematic_id "SPAC23H4.02" ; colour "2" ; gene "ppk9 ||| SPAC23H4.02" ; Alias "ppk9" ; db_xref "SPD:36/36B12" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=related to S. pombe SPCC74.03C (paralog); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk9" ; product "serine/threonine protein kinase Ppk9 (predicted)" ;
chromosome1 GeneDB mRNA 5294976 5295704 . + . mRNA SPAC11E3.07 ; systematic_id "SPAC11E3.07" ; colour "7" ; gene "vma4 ||| SPAC11E3.07" ; Alias "vma4" ; db_xref "SPD:52/52A03" ; GO "GO:0000221; vacuolar proton-translocating V-type ATPase, V1 domain
GO:0005524; ATP binding
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR332W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "vma4" ; product "V-type ATPase V1 subunit E (predicted)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB mRNA 2251491 2253362 . - . mRNA SPAC13D6.04c ; systematic_id "SPAC13D6.04c" ; colour "2" ; gene "btb3 ||| SPAC13D6.04c" ; Alias "btb3" ; db_xref "SPD:35/35C06" ; GO "GO:0005634; nucleus
GO:0000151; ubiquitin ligase complex
GO:0005515; protein binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BTB/POZ domain; date=19700101 ||| term=orthologous to S. cerevisiae YIL001W; date=19700101 ||| term=modification, ubiquitinated; db_xref=PMID:14527422; cv=pt_mod; date=19700101 ||| term=ankyrin repeat protein; date=19700101 ||| term=human ABTB1 ortholog; db_xref=PMID:18429817; date=20080620 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "btb3" ; product "substrate adaptor for cullin 3 ubiquitin ligase Btb3" ;
chromosome1 GeneDB mRNA 4898041 4899856 . + . mRNA SPAC19B12.08 ; systematic_id "SPAC19B12.08" ; colour "2" ; gene "atg4 ||| SPAC19B12.08" ; Alias "atg4" ; db_xref "SPD:18/18B02" ; GO "GO:0005829; cytosol
GO:0004197; cysteine-type endopeptidase activity
GO:0051697; C-terminal protein delipidation
GO:0000045; autophagic vacuole formation
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032258; CVT pathway
GO:0051605; protein maturation by peptide bond cleavage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL223W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atg4" ; product "Atg8 deconjugator Atg4 (predicted)" ;
chromosome1 GeneDB mRNA 4346557 4350842 . - . mRNA SPAC23D3.06c ; systematic_id "SPAC23D3.06c" ; colour "2" ; gene "nup146 ||| SPAC23D3.06c" ; Alias "nup146" ; db_xref "SPD:48/48F08" ; GO "; nuclear membrane
GO:0005643; nuclear pore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051301; cell division
GO:0006913; nucleocytoplasmic transport
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=FG repeat; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL115C and YDR192C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nup146" ; product "nucleoporin Nup146" ;
chromosome1 GeneDB mRNA 2525777 2527427 . + . mRNA SPAC25H1.02 ; systematic_id "SPAC25H1.02" ; colour "7" ; gene "jmj1 ||| SPAC25H1.02" ; Alias "jmj1" ; db_xref "SPD:21/21F01" ; GO "GO:0045449; regulation of transcription
GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0032452; histone demethylase activity
GO:0016577; histone demethylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=jmjC domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "jmj1" ; product "histone demethylase Jmj1 (predicted)" ; reserved_name "jmj1" ;
chromosome1 GeneDB mRNA 1890528 1892012 . + . mRNA SPAPB1A10.14 ; systematic_id "SPAPB1A10.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; attribution=pers. comm. T. Toda; date=20080122 ||| term=species distribution, orthologs cannot be distinguished; date=20080122 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0032446; protein modification by small protein conjugation
GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging" ; colour "7" ; gene "SPAPB1A10.14" ; product "F-box protein (predicted)" ;
chromosome1 GeneDB mRNA 5445350 5447435 . + . mRNA SPAC1039.01 ; db_xref "SPD:45/45F01" ; systematic_id "SPAC1039.01" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; gene "SPAC1039.01" ; product "amino acid permease (predicted)" ;
chromosome1 GeneDB mRNA 5353938 5354307 . - . mRNA SPAC4D7.15 ; Alias "new12" ; systematic_id "SPAC4D7.15" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "new12" ; gene "SPAC4D7.15" ; product "sequence orphan" ; note "conserved in japonicus; possibly CAIB/BAIF family protein" ;
chromosome1 GeneDB mRNA 2275525 2276249 . - . mRNA SPAC4G9.11c ; systematic_id "SPAC4G9.11c" ; colour "2" ; gene "cmb1 ||| SPAC4G9.11c" ; Alias "cmb1" ; db_xref "SPD:42/42H05" ; GO "GO:0006281; DNA repair
GO:0003684; damaged DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=orthologous to S. cerevisiae YKL032C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cmb1" ; product "cytosine-mismatch binding protein 1" ;
chromosome1 GeneDB mRNA 4563693 4565396 . - . mRNA SPAC637.13c ; db_xref "SPD:24/24C03" ; systematic_id "SPAC637.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL047C and YIL105C; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005886; plasma membrane
GO:0035091; phosphoinositide binding
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0048015; phosphoinositide-mediated signaling
GO:0033554; cellular response to stress" ; gene "SPAC637.13c" ; product "cytoskeletal signaling protein (predicted)" ;
chromosome1 GeneDB mRNA 4044881 4047498 . - . mRNA SPAC19G12.02c ; systematic_id "SPAC19G12.02c" ; colour "2" ; gene "pms1 ||| SPAC19G12.02c" ; Alias "pms1" ; db_xref "SPD:38/38E10" ; GO "GO:0000228; nuclear chromosome
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0003677; DNA binding
GO:0030983; mismatched DNA binding
GO:0043570; maintenance of DNA repeat elements
GO:0006298; mismatch repair
GO:0006298; mismatch repair
GO:0006298; mismatch repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL082W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human PMS1 and PMS2 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; primary_name "pms1" ; product "MutL family mismatch-repair protein Pms1" ;
chromosome1 GeneDB mRNA 308381 309937 . - . mRNA SPAC18B11.05 ; systematic_id "SPAC18B11.05" ; colour "7" ; gene "gpi18 ||| SPAC18B11.05" ; Alias "gpi18" ; db_xref "SPD:20/20E04" ; GO "GO:0004584; dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity
GO:0030176; integral to endoplasmic reticulum membrane
GO:0006506; GPI anchor biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR004C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "gpi18" ; product "pig-V, dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 1716010 1717770 . - . mRNA SPAC664.08c ; db_xref "SPD:24/24D11" ; systematic_id "SPAC664.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR299W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005730; nucleolus
GO:0042254; ribosome biogenesis and assembly" ; gene "SPAC664.08c" ; product "traub family protein involved in ribosome biogenesis (predicted)" ;
chromosome1 GeneDB mRNA 4016578 4018371 . - . mRNA SPAC27E2.06c ; db_xref "KEGG:MAP00271; ||| KEGG:MAP00450; ||| KEGG:MAP00970; ||| SPD:25/25H08" ; systematic_id "SPAC27E2.06c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR171C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004825; methionine-tRNA ligase activity
GO:0006431; methionyl-tRNA aminoacylation" ; gene "SPAC27E2.06c" ; product "mitochondrial methionine-tRNA ligase (predicted)" ; EC_number "6.1.1.10" ;
chromosome1 GeneDB mRNA 598473 600721 . + . mRNA SPAC3H8.06 ; systematic_id "SPAC3H8.06" ; colour "2" ; gene "aur1 ||| SPAC3H8.06" ; Alias "aur1" ; db_xref "SPD:20/20C09" ; GO "GO:0030173; integral to Golgi membrane
GO:0045140; inositol phosphoceramide synthase activity
GO:0006674; inositol phosphorylceramide metabolism
GO:0030148; sphingolipid biosynthetic process
GO:0070916; inositol phosphoceramide synthase complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9472078; date=20090826 ||| term=phenotype, resistance to aureobasidin A; allele=aur1R; db_xref=PMID:9472078; cv=phenotype; date=20060601 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:9472078; cv=phenotype; date=20090826 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL004W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "aur1" ; product "inositol phosphorylceramide synthase Aur1 (predicted)" ;
chromosome1 GeneDB mRNA 4219783 4222365 . + . mRNA SPAC1F7.03 ; systematic_id "SPAC1F7.03" ; colour "2" ; gene "pkd2 ||| SPAC1F7.03" ; db_xref "SPD:37/37D12" ; Alias "pkd2" ; GO "GO:0030173; integral to Golgi membrane
GO:0005887; integral to plasma membrane
GO:0031520; plasma membrane of cell tip
GO:0005886; plasma membrane
GO:0005262; calcium channel activity
GO:0005515; protein binding
GO:0006874; calcium ion homeostasis
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0031505; cell wall organization
GO:0071433; fungal-type cell wall repair
GO:0017157; regulation of exocytosis
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0033157; regulation of intracellular protein transport
GO:0070509; calcium ion import
GO:0090002; establishment of protein localization to plasma membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15537393; date=19700101 ||| term=orthologous to S. cerevisiae YAL053W and YGL139W and YPL221W and YOR365C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=misc, rapidly internalised; db_xref=PMID:19543678; date=20090628" ; primary_name "pkd2" ; product "TRP-like ion channel Pkd2" ;
chromosome1 GeneDB mRNA 747143 748384 . - . mRNA SPAC22G7.07c ; db_xref "SPD:19/19G12" ; systematic_id "SPAC22G7.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL192W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0001734; mRNA (N6-adenosine)-methyltransferase activity
GO:0080009; mRNA methylation
GO:0007126; meiosis" ; gene "SPAC22G7.07c" ; product "mRNA (N6-adenosine)-methyltransferase (predicted)" ; EC_number "2.1.1.62" ;
chromosome1 GeneDB mRNA 162757 164187 . + . mRNA SPAC5H10.10 ; db_xref "SPD:18/18F09" ; systematic_id "SPAC5H10.10" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR179W and YPL171C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPAC5H10.10" ; product "NADPH dehydrogenase (predicted)" ; EC_number "1.6.99.1" ;
chromosome1 GeneDB mRNA 4752728 4753830 . + . mRNA SPAPYUG7.05 ; systematic_id "SPAPYUG7.05" ; colour "7" ; GO "GO:0006561; proline biosynthesis
GO:0004735; pyrroline-5-carboxylate reductase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER023W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPAPYUG7.05" ; product "delta-1-pyrroline-5-carboxylate reductase (predicted)" ; EC_number "1.5.1.2" ;
chromosome1 GeneDB mRNA 2629288 2630183 . - . mRNA SPAC7D4.05 ; db_xref "SPD:43/43C12" ; systematic_id "SPAC7D4.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR130W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human HDHD3 ortholog; date=20100718" ; colour "10" ; gene "SPAC7D4.05" ; product "hydrolase (predicted)" ;
chromosome1 GeneDB mRNA 4264024 4264609 . - . mRNA SPAC2C4.03c ; systematic_id "SPAC2C4.03c" ; colour "2" ; gene "smd2 ||| cwf9 ||| SPAC2C4.03c" ; Alias "smd2" ; db_xref "SPD:05/05C07" ; synonym "cwf9" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YLR275W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005685; snRNP U1" ; primary_name "smd2" ; product "Sm snRNP core protein Smd2" ;
chromosome1 GeneDB mRNA 914328 914618 . + . mRNA SPAC1687.08 ; db_xref "SPD:01/01D03" ; systematic_id "SPAC1687.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1687.08" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 884410 885675 . + . mRNA SPAC23G3.09 ; systematic_id "SPAC23G3.09" ; colour "7" ; gene "taf4 ||| SPAC23G3.09" ; Alias "taf4" ; db_xref "SPD:32/32E05" ; GO "GO:0005669; transcription factor TFIID complex
GO:0003702; RNA polymerase II transcription factor activity
GO:0016986; transcription initiation factor activity
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0051123; transcriptional preinitiation complex assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YMR005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "taf4" ; product "transcription factor TFIID complex subunit Taf4 (predicted)" ;
chromosome1 GeneDB mRNA 1380312 1381558 . - . mRNA SPAC57A10.09c ; systematic_id "SPAC57A10.09c" ; colour "7" ; gene "SPAC57A10.09c ||| nhp6" ; Alias "nhp6" ; db_xref "SPD:08/08B11" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0030528; transcription regulator activity
GO:0006338; chromatin remodeling
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0006359; regulation of transcription from RNA polymerase III promoter
GO:0006334; nucleosome assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=orthologous to S. cerevisiae YBR089C-A and YPR052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nhp6" ; product "High-mobility group non-histone chromatin protein (predicted)" ;
chromosome1 GeneDB mRNA 2144894 2145226 . + . mRNA SPAC23C11.07 ; db_xref "SPD:01/01H07" ; systematic_id "SPAC23C11.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC23C11.07" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 623160 625251 . + . mRNA SPAC1F3.05 ; db_xref "SPD:36/36F04" ; systematic_id "SPAC1F3.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=GAT domain; qualifier=inferred from context; date=19700101 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YHR108W and YDR358W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005802; Golgi trans face
GO:0006896; Golgi to vacuole transport
GO:0006886; intracellular protein transport" ; gene "SPAC1F3.05" ; product "Golgi localized Arf binding gamma-adaptin ortholog (predicted)" ;
chromosome1 GeneDB mRNA 2669656 2670261 . + . mRNA SPAC4F8.05c ; systematic_id "SPAC4F8.05c" ; colour "7" ; gene "SPAC4F8.05c ||| mrpl28" ; Alias "mrpl28" ; db_xref "SPD:02/02D07" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR462W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mrpl28" ; product "mitochondrial ribosomal protein subunit L28 (predicted)" ;
chromosome1 GeneDB mRNA 1778493 1782670 . + . mRNA SPAC17A5.14 ; systematic_id "SPAC17A5.14" ; colour "2" ; gene "exo2 ||| SPAC17A5.14" ; Alias "exo2" ; db_xref "SPD:30/30F03" ; GO "GO:0000932; cytoplasmic mRNA processing body
GO:0051908; double-stranded DNA specific 5'-3' exodeoxyribonuclease activity
GO:0000287; magnesium ion binding
GO:0004523; ribonuclease H activity
GO:0004540; ribonuclease activity
GO:0045145; single-stranded DNA specific 5'-3' exodeoxyribonuclease activity
GO:0006364; 35S primary transcript processing
GO:0006402; mRNA catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8781170; date=20070219 ||| term=phenotype, sensitive to caffeine; db_xref=PMID:8781170; cv=phenotype; date=20050413 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:8781170; date=20100806 ||| term=orthologous to S. cerevisiae YGL173C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "exo2" ; product "exonuclease II Exo2" ; EC_number "3.1.11.-" ;
chromosome1 GeneDB mRNA 1008270 1010251 . + . mRNA SPAC821.12 ; systematic_id "SPAC821.12" ; colour "2" ; gene "orb6 ||| SPAC821.12" ; Alias "orb6" ; db_xref "SPD:45/45F06" ; GO "GO:0051285; cell cortex of cell tip
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0000078; cell morphogenesis checkpoint
GO:0010590; regulation of cell separation during cytokinesis
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO: SF 3077846; regulation of establishment or maintenance of cell polarity resulting in cell shape
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO: SF 3077846 and other annotation; regulation of establishment or maintenance of cell polarity resulting in cell shape
GO:0006468; protein amino acid phosphorylation
GO:0007163; regulation of establishment or maintenance of cell polarity
GO:0007346; regulation of mitotic cell cycle
GO:0071470; cellular response to osmotic stress" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9636183; date=19700101 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:9636183; date=20100731 ||| term=Ndr kinase/myotonic dystrophy kinase/cot1/warts family; date=19700101 ||| term=orthologous to S. cerevisiae YNL161W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "orb6" ; product "serine/threonine protein kinase Orb6" ; EC_number "2.7.11.1" ;
chromosome1 GeneDB mRNA 414986 418395 . + . mRNA SPAC31A2.14 ; systematic_id "SPAC31A2.14" ; colour "2" ; gene "SPAC31A2.14" ; Alias "bun107" ; db_xref "SPD:47/47F04" ; synonym "wdr48" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOL087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Binding Upb Nine of 107 kDa; cv=name_description; db_xref=PMID:20838651; date=20100415" ; GO "GO:0051285; cell cortex of cell tip
; cell division site
GO:0005515; protein binding
GO:0005515; protein binding
GO:2000158; positive regulation of ubiquitin- specific protease activity
GO:0034613; cellular protein locaization
GO:0034613; cellular protein locaization" ; primary_name "bun107" ; product "WD repeat protein, human WDR48 family Bun107" ;
chromosome1 GeneDB mRNA 2827047 2828687 . - . mRNA SPAC3F10.06c ; db_xref "SPD:26/26B09" ; systematic_id "SPAC3F10.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR283C; date=19700101 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=genome organization, co- expressed with adjacent gene; qualifier=predicted; cv=genome_org; date=20091113 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0043399; tRNA A64-2'-O-ribosylphosphate transferase activity
GO:0019988; charged-tRNA modification
GO:0005737; cytoplasm" ; gene "SPAC3F10.06c" ; product "initiator methionine tRNA 2'-O-ribosyl phosphate transferase (predicted)" ;
chromosome1 GeneDB mRNA 849486 850146 . + . mRNA SPAC521.05 ; systematic_id "SPAC521.05" ; colour "7" ; gene "rps802 ||| rps8-2 ||| SPAC521.05" ; Alias "rps802" ; db_xref "SPD:06/06F11" ; synonym "rps8-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL072C and YER102W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps802" ; product "40S ribosomal protein S8 (predicted)" ;
chromosome1 GeneDB mRNA 2004838 2007930 . + . mRNA SPAC17H9.02 ; db_xref "SPD:30/30A02" ; systematic_id "SPAC17H9.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YJL050W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0031499; TRAMP complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing
GO:0071049; nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
GO:0043630; ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolism
GO:0016078; tRNA catabolism" ; gene "SPAC17H9.02" ; product "TRAMP complex ATP-dependent RNA helicase (predicted)" ;
chromosome1 GeneDB mRNA 2442689 2443829 . + . mRNA SPAC6B12.16 ; systematic_id "SPAC6B12.16" ; colour "10" ; gene "meu26 ||| SPAC6B12.16" ; note "conserved KTS*YWYHMN**HGI*SKG" ; Alias "meu26" ; db_xref "SPD:18/18A05" ; GO "GO:0005634; nucleus
GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to E. cuniculi ECU03_0350; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101" ; primary_name "meu26" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 2811438 2812493 . - . mRNA SPAC1B2.03c ; db_xref "SPD:16/16A03" ; systematic_id "SPAC1B2.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL196C and YCR034W and YLR372W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0019368; fatty acid elongation, unsaturated fatty acid
GO:0009922; fatty acid elongase activity
GO:0005789; endoplasmic reticulum membrane
GO:0030148; sphingolipid biosynthesis" ; gene "SPAC1B2.03c" ; product "GNS1/SUR4 family protein (predicted)" ;
chromosome1 GeneDB mRNA 3963086 3966180 . + . mRNA SPAC11G7.02 ; systematic_id "SPAC11G7.02" ; colour "2" ; gene "pub1 ||| SPAC11G7.02" ; Alias "pub1" ; db_xref "SPD:29/29D01" ; GO "GO:0005737; cytoplasm
GO:0005543; phospholipid binding
GO:0004842; ubiquitin protein ligase activity
GO:0060360; negative regulation of leucine import in response to ammonium ion
GO:0016567; protein ubiquitination
GO:0051726; regulation of cell cycle
GO:0051453; regulation of intracellular pH
GO:0034762; regulation of transmembrane transport
GO:0006511; ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YER125W; date=19700101 ||| term=ubiquitin-protein ligase E3; date=20081104 ||| term=modification, ubiquitinated; db_xref=PMID:8635463; cv=pt_mod; evidence=IDA; date=20081001 ||| term=modification, ubiquitinated; evidence=IDA; db_xref=PMID:20838651; date=20101001 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=Nedd4/Rsp5 family; db_xref=PMID:11956316; date=20081001 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Cdc25; db_xref=PMID:8635463; date=20100823" ; primary_name "pub1" ; product "HECT-type ubiquitin-protein ligase E3 Pub1" ; EC_number "6.3.2.-" ;
chromosome1 GeneDB mRNA 1928771 1931267 . - . mRNA SPAC3H1.01c ; systematic_id "SPAC3H1.01c" ; colour "7" ; gene "orp3 ||| orc3 ||| SPAP14E8.06c ||| SPAC3H1.01c" ; Alias "orc3" ; db_xref "SPD:37/37D04" ; synonym "orp3 ||| SPAP14E8.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0003688; DNA replication origin binding
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0005656; pre-replicative complex
GO:0031261; DNA replication preinitiation complex" ; primary_name "orc3" ; product "origin recognition complex subunit Orp3 (predicted)" ;
chromosome1 GeneDB mRNA 5343763 5345959 . - . mRNA SPAP8A3.14c ; systematic_id "SPAP8A3.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR139C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0042645; mitochondrial nucleoid
GO:0009060; aerobic respiration
GO:0032543; mitochondrial translation" ; gene "SPAP8A3.14c" ; product "mitochondrial inner membrane protein (predicted)" ;
chromosome1 GeneDB mRNA 59614 60843 . - . mRNA SPAC977.14c ; db_xref "SPD:50/50C02" ; systematic_id "SPAC977.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, conserved in Vertebrates; date=20100827" ; colour "10" ; gene "SPAC977.14c" ; product "aldo/keto reductase, unknown biological role" ;
chromosome1 GeneDB mRNA 2507707 2509552 . - . mRNA SPAC23H3.09c ; systematic_id "SPAC23H3.09c" ; colour "7" ; gene "SPAC23H3.09c ||| gly1" ; Alias "gly1" ; db_xref "KEGG:MAP00260; ||| SPD:17/17G08" ; GO "GO:0006545; glycine biosynthesis
GO:0006567; threonine catabolism
GO:0004793; threonine aldolase activity
GO:0006544; glycine metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL046C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gly1" ; product "threonine aldolase Gly1 (predicted)" ; EC_number "4.1.2.5" ;
chromosome1 GeneDB mRNA 2736594 2738573 . - . mRNA SPAC6F6.04c ; db_xref "SPD:23/23F08" ; systematic_id "SPAC6F6.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=similar to S. pombe SPAC922.05c; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; colour "7" ; gene "SPAC6F6.04c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 1259235 1260227 . + . mRNA SPAC56E4.07 ; db_xref "SPD:08/08C12" ; systematic_id "SPAC56E4.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827" ; colour "10" ; gene "SPAC56E4.07" ; product "N-acetyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 5231140 5232566 . + . mRNA SPAC14C4.03 ; systematic_id "SPAC14C4.03" ; colour "2" ; gene "mek1 ||| SPAC14C4.03" ; Alias "mek1" ; db_xref "SPD:44/44F05" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0051598; meiotic recombination checkpoint
GO:0051598; meiotic recombination checkpoint
GO:0090006; regulation of linear element formation
GO:0030998; linear element
GO:0005524; ATP binding
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:12482912; date=19700101 ||| term=target is Cdc25; qualifier=inhibits; db_xref=PMID:12482912; date=19700101 ||| term=orthologous to S. cerevisiae YOR351C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12032093; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mek1" ; product "Cds1/Rad53/Chk2 family protein kinase Mek1" ; EC_number "2.7.11.1" ;
chromosome1 GeneDB mRNA 3466462 3467876 . + . mRNA SPAC3A11.03 ; db_xref "SPD:15/15F03" ; systematic_id "SPAC3A11.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR129C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human c17orf95 ortholog; date=20100718 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; colour "10" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0005737; cytoplasm" ; gene "SPAC3A11.03" ; product "methyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 2048421 2050160 . - . mRNA SPAC607.08c ; db_xref "SPD:35/35H05" ; systematic_id "SPAC607.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL034W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TMCO4 ortholog; date=20100718" ; colour "10" ; gene "SPAC607.08c" ; product "DUF726 family protein" ;
chromosome1 GeneDB mRNA 4500554 4501673 . + . mRNA SPAC1851.02 ; systematic_id "SPAC1851.02" ; colour "7" ; gene "SPAC1851.02" ; Alias "slc1" ; db_xref "SPD:12/12D10" ; GO "GO:0003841; 1-acylglycerol-3-phosphate O- acyltransferase activity
GO:0046474; glycerophospholipid biosynthetic process
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDL052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "slc1" ; product "1-acylglycerol-3-phosphate O-acyltransferase Slc1 (predicted)" ; EC_number "2.3.1.51" ;
chromosome1 GeneDB mRNA 1880738 1881945 . - . mRNA SPAPB1A10.10c ; Alias "ypt71" ; systematic_id "SPAPB1A10.10c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Rab subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YML001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, vacoule organization defects, large vacuoles; db_xref=PMID:16357443; date=20100704" ; GO "GO:0005744; vacuolar membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006896; Golgi to vacuole transport
GO:0006897; endocytosis
GO:0006886; intracellular protein transport
GO:0061192; negative regulation of vacuole fusion, non-autophagic
GO:0007264; small GTPase mediated signal transduction" ; gene "ypt71 ||| SPAPB1A10.10c" ; primary_name "ypt71" ; product "GTPase Ypt71" ;
chromosome1 GeneDB mRNA 5392273 5392650 . + . mRNA SPAC3G6.07 ; db_xref "SPD:02/02G04" ; systematic_id "SPAC3G6.07" ; colour "6" ; gene "SPAC3G6.07" ; product "dubious" ;
chromosome1 GeneDB mRNA 3074338 3075988 . - . mRNA SPAC24C9.15c ; systematic_id "SPAC24C9.15c" ; colour "2" ; db_xref "SPD:44/44H02" ; Alias "spn5" ; synonym "mde9 ||| meu28" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:10747048; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101" ; GO "GO:0005525; GTP binding" ; primary_name "spn5" ; product "septin Spn5" ;
chromosome1 GeneDB mRNA 122845 124029 . + . mRNA SPAC11D3.09 ; db_xref "SPD:44/44A01" ; systematic_id "SPAC11D3.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAPB24D3.03 and SPBC8E4.03 (paralog); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAC11D3.09" ; product "agmatinase (predicted)" ; EC_number "3.5.3.11" ;
chromosome1 GeneDB mRNA 3270206 3272295 . + . mRNA SPAC6G9.12 ; systematic_id "SPAC6G9.12" ; colour "2" ; gene "cfr1 ||| SPAC6G9.12" ; Alias "cfr1" ; db_xref "SPD:26/26C05" ; GO "GO:0009250; glucan biosynthesis
GO:0006031; chitin biosynthesis
GO:0032219; cell wall catabolism during cytogamy
GO:0032219; cell wall catabolism during cytogamy
GO:0032220; plasma membrane fusion during cytogamy
GO:0006893; Golgi to plasma membrane transport
GO:0005794; Golgi apparatus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; date=20060519 ||| term=orthologous to S. cerevisiae YLR330W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "cfr1" ; product "Chs five related protein Cfr1" ;
chromosome1 GeneDB mRNA 4160820 4162135 . - . mRNA SPAC25B8.04c ; db_xref "SPD:17/17H07" ; systematic_id "SPAC25B8.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR203C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0045727; positive regulation of translation" ; gene "SPAC25B8.04c" ; product "mitochondrial splicing suppressor (predicted)" ;
chromosome1 GeneDB mRNA 4065984 4067151 . - . mRNA SPAC19G12.17 ; Alias "new10" ; systematic_id "SPAC19G12.17" ; controlled_curation "term=conserved in Fungi; date=20100420 ||| term=conserved in Eukaryotes only; date=20100420 ||| term=conserved in Eukaryotes; date=20100420 ||| term=conserved in Vertebrates; date=20100420 ||| term=conserved in Metazoa; date=20100420 ||| term=conserved in Fungi; date=20100420 ||| term=no apparent S. cerevisiae ortholog; date=20100420 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "10" ; primary_name "new10" ; product "enhancer of rudimentary homolog" ;
chromosome1 GeneDB mRNA 712491 714014 . - . mRNA SPAC1296.03c ; systematic_id "SPAC1296.03c" ; colour "2" ; gene "sxa2 ||| SPAC1296.03c" ; Alias "sxa2" ; db_xref "SPD:24/24G01" ; GO "GO:0000747; conjugation with cellular fusion
GO:0004185; serine carboxypeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is P-factor; db_xref=PMID:10792724; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "sxa2" ; product "serine carboxypeptidase Sxa2" ; EC_number "3.4.16.5" ;
chromosome1 GeneDB mRNA 4278494 4279538 . - . mRNA SPAC2C4.11c ; systematic_id "SPAC2C4.11c" ; colour "2" ; gene "rbp28 ||| SPAC2C4.11c" ; Alias "rbp28" ; db_xref "SPD:09/09F07" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0005730; nucleolus
GO:0003723; RNA binding
GO:0000054; ribosome export from nucleus
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=KH domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR145C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "rbp28" ; product "RNA-binding protein Rbp28" ;
chromosome1 GeneDB mRNA 2371692 2372768 . + . mRNA SPAC22H10.02 ; db_xref "SPD:07/07H04" ; systematic_id "SPAC22H10.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa B21O8.090; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC22H10.02" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 1 7265 . - . mRNA SPAC212.11 ; Alias "tlh1" ; systematic_id "SPAC212.11" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally repressed by Chp1; cv=gene_ex; db_xref=PMID:16407326; date=20060327 ||| term=gene expression, transcriptionally repressed by Rik1; cv=gene_ex; db_xref=PMID:16407326; date=20060327 ||| term=gene expression, transcriptionally repressed by Taz1; cv=gene_ex; db_xref=PMID:16407326; date=20060327 ||| term=genome organization, present at telomere ends; db_xref=PMID:15591066; cv=genome_org; date=20060327 ||| term=dh repeats; db_xref=PMID:15591066; date=20060327 ||| term=similar to S. pombe SPBCPT2R1.08c; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070913 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0000781; chromosome, telomeric region
GO:0005634; nucleus
GO:0043140; ATP-dependent 3' to 5' DNA helicase activity
GO:0000722; telomere maintenance via recombination" ; gene "SPAC212.11 ||| tlh1" ; primary_name "tlh1" ; product "RecQ type DNA helicase" ;
chromosome1 GeneDB mRNA 3837449 3838000 . + . mRNA SPAC4H3.06 ; db_xref "SPD:42/42C10" ; systematic_id "SPAC4H3.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC4H3.06" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 5208683 5218745 . + . mRNA SPAC19D5.04 ; systematic_id "SPAC19D5.04" ; colour "2" ; gene "ptr1 ||| SPAC19D5.04" ; Alias "ptr1" ; db_xref "SPD:34/34D06" ; GO "GO:0006406; mRNA export from nucleus
GO:0004842; ubiquitin-protein ligase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; db_xref=PMID:15094387; date=19700101 ||| term=orthologous to S. cerevisiae YDR457W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ptr1" ; product "HECT-type ubiquitin ligase E3 Ptr1" ;
chromosome1 GeneDB mRNA 4319247 4320206 . - . mRNA SPAC27F1.02c ; systematic_id "SPAC27F1.02c" ; colour "2" ; gene "cdc8 ||| fus4 ||| SPAC27F1.02c" ; Alias "cdc8" ; db_xref "SPD:05/05E09" ; synonym "fus4" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated dumbbell; qualifier=deletion; db_xref=PMID:958201; date=20100802 ||| term=orthologous to S. cerevisiae YNL079C and YIL138C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=cofilin/tropomyosin family; date=20091118 ||| term=human TPM3 and TPM4 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=modification, acetylated; cv=pt_mod; date=20060611" ; GO "GO:0003779; actin binding
; contractile ring
; contractile ring
GO:0000915; cytokinesis, contractile ring formation
GO:0033205; cell cycle cytokinesis
GO:0032220; plasma membrane fusion during cytogamy
GO:0032432; actin cable
GO:0071519; actin filament bundle assembly involved in actomyosin contractile ring formation" ; primary_name "cdc8" ; product "tropomyosin" ;
chromosome1 GeneDB mRNA 2111403 2113715 . + . mRNA SPAC20H4.01 ; systematic_id "SPAC20H4.01" ; colour "7" ; db_xref "SPD:49/49D02" ; Alias "utp5" ; synonym "SPAC631.03" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA
GO:0007126; ascospore formation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR398W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; primary_name "utp5" ; product "U3 snoRNP-associated protein Utp5 (predicted)" ;
chromosome1 GeneDB mRNA 4991146 4993572 . + . mRNA SPAC1952.13 ; systematic_id "SPAC1952.13" ; colour "2" ; gene "ned1 ||| SPAC1952.13" ; Alias "ned1" ; db_xref "SPD:37/37H03" ; GO "GO:0005737; cytoplasm
GO:0000287; magnesium ion binding
GO:0008195; phosphatidate phosphatase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0007029; endoplasmic reticulum organization and biogenesis
GO:0006998; nuclear membrane organization and biogenesis
GO:0006997; nuclear organization and biogenesis
GO:0006913; nucleocytoplasmic transport
GO:0071071; regulation of phospholipid biosynthesis
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, nuclear elongation and deformation; cv=name_description; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12376568; date=19700101 ||| term=orthologous to S. cerevisiae YMR165C; db_xref=PMID:12376568; date=19700101 ||| term=disease associated, lipodystrophy; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "ned1" ; product "lipin Ned1" ; EC_number "3.1.3.4" ;
chromosome1 GeneDB mRNA 1010471 1015367 . - . mRNA SPAC821.13c ; systematic_id "SPAC821.13c" ; colour "7" ; gene "SPAC821.13c ||| SPAC955.01c" ; db_xref "SPD:48/48G07" ; synonym "SPAC955.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR162C; date=19700101 ||| term=disease associated, cholestasis; date=20080625 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0016021; integral to membrane
GO:0030140; trans-Golgi network transport vesicle
GO:0004012; phospholipid-translocating ATPase activity
GO:0045332; phospholipid translocation" ; product "P-type ATPase (predicted)" ; EC_number "3.6.3.1" ;
chromosome1 GeneDB mRNA 4677569 4680182 . - . mRNA SPAC144.13c ; systematic_id "SPAC144.13c" ; colour "2" ; gene "srw1 ||| ste9 ||| SPAC144.13c" ; Alias "srw1" ; db_xref "SPD:33/33C11" ; synonym "ste9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL003C; date=19700101 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:10921876; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:10921876; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, sterile; db_xref=PMID:3185514; date=20101013 ||| term=name description, STErile; db_xref=PMID:3185514; date=20101013" ; GO "GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0007092; anaphase-promoting complex activation during mitotic cell cycle
GO:0008054; cyclin catabolism
GO:0045736; negative regulation of cyclin- dependent protein kinase activity
GO:0031137; regulation of conjugation with cellular fusion" ; primary_name "srw1" ; product "CDK inhibitor Srw1" ;
chromosome1 GeneDB mRNA 2886960 2890095 . + . mRNA SPACUNK4.12c ; systematic_id "SPACUNK4.12c" ; colour "7" ; gene "SPACUNK4.12c ||| mug138" ; Alias "mug138" ; db_xref "SPD:47/47D09" ; GO "GO:0071432; peptide mating pheromone maturation involved in conjugation with cellular fusion
GO:0006508; proteolysis
GO:0008237; metallopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR389C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug138" ; product "metallopeptidase (predicted)" ;
chromosome1 GeneDB mRNA 4351008 4352369 . + . mRNA SPAC23D3.07 ; systematic_id "SPAC23D3.07" ; colour "7" ; gene "SPAC23D3.07 ||| pup1" ; Alias "pup1" ; db_xref "SPD:12/12G03" ; GO "GO:0005634; nucleus
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR157C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "pup1" ; product "20S proteasome component beta 2 (predicted)" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB mRNA 2849634 2851761 . - . mRNA SPAC3F10.16c ; db_xref "SPD:27/27B01" ; systematic_id "SPAC3F10.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL099W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005525; GTP binding
GO:0042254; ribosome biogenesis and assembly
GO:0000054; ribosome export from nucleus" ; gene "SPAC3F10.16c" ; product "GTP binding protein, HSR1-related (predicted)" ;
chromosome1 GeneDB mRNA 3976352 3980855 . - . mRNA SPAPB18E9.02c ; Alias "ppk18" ; systematic_id "SPAPB18E9.02c" ; colour "2" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YFL033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "ppk18 ||| SPAPB18E9.02c" ; primary_name "ppk18" ; product "serine/threonine protein kinase Ppk18 (predicted)" ;
chromosome1 GeneDB mRNA 5542419 5542973 . + . mRNA SPAC186.06 ; db_xref "SPD:05/05F12" ; systematic_id "SPAC186.06" ; GO "GO:0030968; endoplasmic reticulum unfolded protein response" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human MAWBP ortholog; date=20091004 ||| term=warning, proteomics data indicates an N terminally extended version of this gene which would contain and upstream stop codon and a frameshift; db_xref=PMID:21270388; date=20110201" ; colour "7" ; gene "SPAC186.06" ; product "ER unfolded protein response protein (predicted)" ;
chromosome1 GeneDB mRNA 5277489 5281390 . - . mRNA SPAC11E3.01c ; systematic_id "SPAC11E3.01c" ; colour "2" ; gene "SPAC2H10.03c ||| SPAC11E3.01c ||| swr1" ; Alias "swr1" ; db_xref "SPD:39/39D03" ; synonym "SPAC2H10.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR334W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:cccccccc; date=20090110" ; GO "GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange
GO:0004003; ATP-dependent DNA helicase activity
GO:0005524; ATP binding" ; primary_name "swr1" ; product "SNF2 family helicase Swr1" ;
chromosome1 GeneDB mRNA 3568087 3569079 . - . mRNA SPAC17A2.08c ; db_xref "SPD:10/10D09" ; systematic_id "SPAC17A2.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC17A2.08c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 283370 289145 . + . mRNA SPAC1F5.04c ; systematic_id "SPAC1F5.04c" ; colour "2" ; gene "cdc12 ||| SPAC1F5.04c" ; Alias "cdc12" ; db_xref "SPD:31/31B07" ; GO "GO:0005826; contractile ring
GO:0003779; actin binding
GO:0005515; protein binding
GO:0051017; actin cable formation
GO:0045010; actin nucleation
GO:0051016; barbed-end actin filament capping
GO:0000915; cytokinesis, contractile ring formation
GO:0051126; negative regulation of actin nucleation
GO:0030833; regulation of actin filament polymerization
GO:0061164; transitional endoplasmic reticulum polarization at cell division site
GO:0071519; actin filament bundle assembly involved in actomyosin contractile ring formation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated dumbbell; qualifier=deletion; db_xref=PMID:958201; date=20100802 ||| term=orthologous to S. cerevisiae YNL271C and YIL159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cdc12" ; product "formin Cdc12" ;
chromosome1 GeneDB mRNA 336335 338041 . + . mRNA SPAC12G12.06c ; db_xref "SPD:17/17A10" ; systematic_id "SPAC12G12.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing" ; gene "SPAC12G12.06c" ; product "rRNA processing protein (predicted)" ;
chromosome1 GeneDB mRNA 2203695 2204355 . - . mRNA SPAC1783.08c ; systematic_id "SPAC1783.08c" ; colour "7" ; gene "rpl1502 ||| rpl15-2 ||| SPAC1783.08c" ; Alias "rpl1502" ; db_xref "SPD:31/31F08" ; synonym "rpl15-2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR029C and YMR121C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl1502" ; product "60S ribosomal protein L15b (predicted)" ;
chromosome1 GeneDB mRNA 3281482 3282740 . - . mRNA SPAPB1E7.01c ; systematic_id "SPAPB1E7.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080729 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAPB1E7.01c" ; product "conserved fungal family" ;
chromosome1 GeneDB mRNA 2955766 2957087 . - . mRNA SPAPB24D3.06c ; systematic_id "SPAPB24D3.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAPB24D3.06c" ; product "DUF1749 family protein" ;
chromosome1 GeneDB mRNA 4811964 4813117 . + . mRNA SPAC20G4.01 ; systematic_id "SPAC20G4.01" ; colour "7" ; gene "caf16 ||| SPAC22F8.13 ||| SPAC20G4.01" ; Alias "caf16" ; db_xref "SPD:50/50C01" ; synonym "SPAC22F8.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YFL028C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030014; CCR4-NOT complex
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0006354; RNA elongation
GO:0006402; mRNA catabolic process
GO:0006355; regulation of transcription, DNA- dependent
GO:0006367; transcription initiation from RNA polymerasse II promoter
GO:0006368; RNA elongation from RNA polymarase II promoter" ; primary_name "caf16" ; product "CCR4-Not complex subunit Caf16 (predicted)" ;
chromosome1 GeneDB mRNA 28738 29638 . + . mRNA SPAC212.01c ; systematic_id "SPAC212.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; gene "SPAC212.01c" ; product "S. pombe specific DUF999 family protein 2" ; note "repeat expansion SQRSQRS" ;
chromosome1 GeneDB mRNA 1030215 1031921 . + . mRNA SPAC139.06 ; systematic_id "SPAC139.06" ; colour "2" ; gene "hat1 ||| SPAC139.06 ||| SPAC23C4.01" ; note "PMID:17052979 is pending curation" ; Alias "hat1" ; db_xref "SPD:44/44G05" ; synonym "SPAC23C4.01 ||| kat1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0000123; histone acetyltransferase complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0004402; histone acetyltransferase activity
GO:0006342; chromatin silencing
GO:0016573; histone acetylation
GO:0006302; double-strand break repair" ; primary_name "hat1" ; product "histone acetyltransferase Hat1" ; EC_number "2.3.1.48" ;
chromosome1 GeneDB mRNA 2499035 2500236 . + . mRNA SPAC23H3.04 ; db_xref "SPD:19/19C03" ; systematic_id "SPAC23H3.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC1952.10C (paralog); date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:18488015; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005886; plasma membrane" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 4498132 4500331 . + . mRNA SPAC17C9.01c ; systematic_id "SPAC17C9.01c" ; colour "2" ; gene "nuc2 ||| apc3 ||| SPAC17C9.01c ||| SPAC1851.01" ; Alias "nuc2" ; db_xref "SPD:33/33F10" ; synonym "apc3 ||| SPAC1851.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL084C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cut; qualifier=ts; db_xref=PMID:7622618; date=20100723 ||| term=phenotype, sterile; qualifier=conditional; db_xref=PMID:7622618; date=20100723 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:7622618; date=20100923" ; GO "GO:0005680; anaphase-promoting complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0071851; mitotic G1 cell cycle arrest in response to nitrogen starvation
GO:0008054; cyclin catabolism
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0016567; protein ubiquitination
GO:0030071; regulation of mitotic metaphase/anaphase transition" ; primary_name "nuc2" ; product "anaphase-promoting complex subunit Apc3" ;
chromosome1 GeneDB mRNA 5352391 5353672 . - . mRNA SPAC4D7.02c ; db_xref "SPD:16/16D02" ; systematic_id "SPAC4D7.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL206C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0008889; glycerophosphodiester phosphodiesterase activity
GO:0006071; glycerol metabolism
GO:0005739; mitochondrion
GO:0005783; endoplasmic reticulum" ; gene "SPAC4D7.02c" ; product "glycerophosphoryl diester phosphodiesterase (predicted)" ; EC_number "3.1.4.46" ;
chromosome1 GeneDB mRNA 653520 656602 . + . mRNA SPAC1D4.10 ; systematic_id "SPAC1D4.10" ; colour "2" ; db_xref "SPD:28/28H01" ; Alias "trz1" ; synonym "sptrz1" ; GO "GO:0005634; nucleus
; 3'-tRNA processing endoribonuclease activity
GO:0042779; tRNA 3'-trailer cleavage" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR079C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20090628 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:19555350; date=20090628 ||| term=complementation, functionally complemented by S. cerevisiae YKR079C; db_xref=PMID:19555350; date=20100923 ||| term=protein sequence feature, NLS; db_xref=PMID:21208191; residue=208-211; evidence=IMP; date=20110110" ; primary_name "trz1" ; product "3'-tRNA processing endonuclease tRNAse Z L2 Trz1 (predicted)" ; EC_number "3.1.26.11" ;
chromosome1 GeneDB mRNA 3888573 3891098 . - . mRNA SPAC926.04c ; systematic_id "SPAC926.04c" ; colour "2" ; gene "SPAC926.04c" ; Alias "hsp90" ; db_xref "SPD:28/28A02" ; synonym "swo1 ||| git10" ; GO "GO:0042623; ATPase activity, coupled
GO:0006457; protein folding
GO:0033554; cellular response to stress
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0045014; negative regulation of transcription by glucose
GO:0007584; response to nutrient
GO:0019933; cAMP-mediated signaling
GO:0000747; conjugation with cellular fusion
GO:0061077; chaperone-mediated protein folding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to high temperature; cv=phenotype; db_xref=PMID:18430926; date=20090114 ||| term=phenotype, growth defect, slow growth at high temperatures; cv=phenotype; db_xref=PMID:18430926; date=20090114 ||| term=phenotype, glucose repression defects; cv=phenotype; db_xref=PMID:18430926; date=20090114 ||| term=phenotype, cell morphology, small cells; qualifier=mutant_allele|point_mutation; db_xref=PMID:7813446; date=20101207 ||| term=orthologous to S. cerevisiae YPL240C and YMR186W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=target is Git7; evidence=TAS; db_xref=PMID:18430926; date=20090114 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=pathway, PKA; cv=pathway; db_xref=PMID:18430926; date=20091215 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=misc functional group, chaperone; cv=m_f_g; date=20100126 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100208 ||| term=human HSPCA and HSPCB ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "hsp90" ; product "Hsp90 chaperone" ;
chromosome1 GeneDB mRNA 427583 429318 . + . mRNA SPAC13C5.03 ; systematic_id "SPAC13C5.03" ; colour "2" ; gene "tht1 ||| SPAC13C5.03" ; Alias "tht1" ; db_xref "SPD:35/35G11" ; GO "GO:0048288; nuclear membrane fusion during karyogamy
GO:0000742; karyogamy during conjugation with cellular fusion
GO:0031965; nuclear membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR065W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "tht1" ; product "nuclear membrane protein involved in karyogamy Tht1" ;
chromosome1 GeneDB mRNA 5322202 5325009 . + . mRNA SPAP8A3.05 ; systematic_id "SPAP8A3.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR076C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005525; GTP binding
GO:0006402; mRNA catabolic process
GO:0000178; exosome (RNase complex)" ; gene "SPAP8A3.05" ; product "ski complex interacting GTPase (predicted)" ;
chromosome1 GeneDB mRNA 5367411 5369378 . + . mRNA SPAC4D7.09 ; systematic_id "SPAC4D7.09" ; colour "7" ; gene "tif223 ||| SPAC4D7.09" ; Alias "tif223" ; db_xref "SPD:35/35H04" ; GO "; eukaryotic translation initiation factor 2B complex
GO:0006413; translational initiation
GO:0003743; translation initiation factor activity
GO:0005840; ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, leukoencephalopathy; date=20060926 ||| term=disease associated, neurological disorders; date=20060926 ||| term=orthologous to S. cerevisiae YOR260W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tif223" ; product "translation initiation factor eIF2B gamma subunit (predicted)" ;
chromosome1 GeneDB mRNA 4894026 4895179 . - . mRNA SPAC19B12.06c ; systematic_id "SPAC19B12.06c" ; colour "10" ; gene "SPAC19B12.06c" ; note "22.04.2003 added exon 18153..18218" ; db_xref "SPD:13/13H12" ; GO "GO:0005794; Golgi apparatus
; COPI-coated vesicle
GO:0004252; serine-type endopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL246C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; product "rhomboid family protease" ;
chromosome1 GeneDB mRNA 4557641 4558688 . - . mRNA SPAC637.10c ; systematic_id "SPAC637.10c" ; colour "2" ; gene "rpn10 ||| pus1 ||| SPAC637.10c" ; Alias "rpn10" ; db_xref "SPD:12/12G01" ; synonym "pus1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR200W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0043130; ubiquitin binding
GO:0042177; negative regulation of protein catabolism
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; primary_name "rpn10" ; product "19S proteasome regulatory subunit Rpn10" ;
chromosome1 GeneDB mRNA 3930586 3934105 . - . mRNA SPAC2F3.06c ; systematic_id "SPAC2F3.06c" ; colour "2" ; gene "kap104 ||| SPAC2F3.06c" ; Alias "kap104" ; db_xref "SPD:29/29F05" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0031965; nuclear membrane
GO:0008565; protein transporter activity
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YBR017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "kap104" ; product "karyopherin Kap104" ;
chromosome1 GeneDB mRNA 2457495 2459781 . - . mRNA SPAC19A8.15 ; systematic_id "SPAC19A8.15" ; colour "7" ; gene "trp2 ||| SPAC19A8.15" ; Alias "trp2" ; db_xref "SPD:27/27H01" ; GO "GO:0000162; tryptophan biosynthesis
GO:0004834; tryptophan synthase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL026C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "trp2" ; product "tryptophan synthase (predicted)" ; EC_number "4.2.1.20" ;
chromosome1 GeneDB mRNA 5521357 5523108 . - . mRNA SPAC869.01 ; db_xref "SPD:36/36A07" ; systematic_id "SPAC869.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827" ; colour "10" ; gene "SPAC869.01" ; product "amidase (predicted)" ;
chromosome1 GeneDB mRNA 403813 405249 . - . mRNA SPAC31A2.09c ; systematic_id "SPAC31A2.09c" ; colour "7" ; gene "apm4 ||| SPAC31A2.09c" ; Alias "apm4" ; db_xref "SPD:44/44F07" ; GO "GO:0016192; vesicle-mediated transport
GO:0030122; AP-2 adaptor complex
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "apm4" ; product "AP-2 adaptor complex subunit Apm4 (predicted)" ;
chromosome1 GeneDB mRNA 5315814 5316491 . - . mRNA SPAP8A3.02c ; Alias "ofd2" ; systematic_id "SPAP8A3.02c" ; colour "2" ; GO "GO:0071456; cellular response to hypoxia" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulated by Sre1; db_xref=PMID:18418381; cv=gene_ex; date=20080430 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPAP8A3.02c ||| ofd2" ; primary_name "ofd2" ; product "2 OG-Fe(II) oxygenase superfamily protein Ofd2" ;
chromosome1 GeneDB mRNA 1586431 1587530 . + . mRNA SPAC23H4.13c ; db_xref "SPD:42/42F02" ; systematic_id "SPAC23H4.13c" ; controlled_curation "term=species distribution, sequence orphan, uncharacterised; date=20091213 ||| term=species distribution, no apparent orthologs; date=20091213 ||| term=species distribution, identified in S. pombe only; date=20091213 ||| term=warning, previously annotated as dubious; cv=warning; date=20091213" ; colour "8" ; gene "SPAC23H4.13c" ; product "sequence orphan" ; note "nonconsensus branch" ;
chromosome1 GeneDB mRNA 542037 543557 . - . mRNA SPAC2F7.06c ; systematic_id "SPAC2F7.06c" ; colour "2" ; gene "pol4 ||| SPAC2F7.06c" ; note "A template-instructed polymerase with preference for purines which combines properties of mammalian DNA polymerase beta, mu and lambda (PMID 16120966)" ; Alias "pol4" ; db_xref "SPD:24/24F07" ; GO "GO:0005634; nucleus
GO:0006287; base-excision repair, gap-filling
GO:0008408; 3'-5' exonuclease activity
GO:0003887; DNA-directed DNA polymerase activity
GO:0051575; 5'-deoxyribose-5-phosphate lyase activity
GO:0003899; DNA-directed RNA polymerase activity
GO:0007533; mating type switching
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0000166; nucleotide binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; cv=protein_family; date=20061127 ||| term=orthologous to S. cerevisiae YCR014C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "pol4" ; product "DNA polymerase X family" ; EC_number "2.7.7.7 ||| 2.7.7.6" ;
chromosome1 GeneDB mRNA 44704 45414 . + . mRNA SPAC977.08 ; db_xref "SPD:51/51B09" ; systematic_id "SPAC977.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=similar to S. pombe SPBC1348.09; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC977.08" ; product "short chain dehydrogenase (predicted)" ;
chromosome1 GeneDB mRNA 1641706 1642753 . + . mRNA SPAC343.02 ; systematic_id "SPAC343.02" ; colour "7" ; gene "SPAC343.02 ||| img1" ; Alias "img1" ; db_xref "SPD:05/05F03" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR046C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "img1" ; product "mitochondrial ribosomal protein subunit L19 (predicted)" ;
chromosome1 GeneDB mRNA 4483996 4484603 . + . mRNA SPAC17C9.09c ; systematic_id "SPAC17C9.09c" ; colour "7" ; gene "tim13 ||| SPAC17C9.09c" ; Alias "tim13" ; db_xref "SPD:31/31D02" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0042719; mitochondrial intermembrane space protein transporter complex
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR181W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tim13" ; product "TIM22 inner membrane protein import complex subunit Tim13 (predicted)" ;
chromosome1 GeneDB mRNA 5179652 5181232 . - . mRNA SPAC26F1.03 ; systematic_id "SPAC26F1.03" ; colour "7" ; gene "pda1 ||| SPAC26F1.03" ; Alias "pda1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00290; ||| KEGG:MAP00620; ||| KEGG:MAP00650; ||| SPD:22/22C01" ; GO "GO:0006086; acetyl-CoA biosynthesis from pyruvate
GO:0004739; pyruvate dehydrogenase (acetyl- transferring) activity
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, lactic acidosis; date=20060725 ||| term=orthologous to S. cerevisiae YER178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "pda1" ; product "pyruvate dehydrogenase e1 component alpha subunit Pda1 (predicted)" ; EC_number "1.2.4.1" ;
chromosome1 GeneDB mRNA 2967916 2972021 . - . mRNA SPAPB24D3.10c ; systematic_id "SPAPB24D3.10c" ; colour "2" ; gene "agl1 ||| agl ||| SPAPB24D3.10c" ; Alias "agl1" ; synonym "agl" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC922.02c and SPAC30D11.01c; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11298744; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog (cannot be distinguished); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0005576; extracellular region
GO:0004558; alpha-glucosidase activity
GO:0044247; cellular polysaccharide catabolic process
GO:0009313; oligosaccharide catabolism" ; primary_name "agl1" ; product "alpha-glucosidase Agl1" ; EC_number "3.2.1.20" ;
chromosome1 GeneDB mRNA 3689230 3691125 . + . mRNA SPAC15A10.06 ; db_xref "SPD:26/26E07" ; systematic_id "SPAC15A10.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR456W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0016021; integral to membrane
GO:0015386; potassium:hydrogen antiporter activity
GO:0015385; sodium:hydrogen antiporter activity
GO:0006813; potassium ion transport
GO:0006885; regulation of pH
GO:0006814; sodium ion transport" ; colour "7" ; gene "SPAC15A10.06" ; product "CPA1 sodium ion/proton antiporter (predicted)" ;
chromosome1 GeneDB mRNA 4179903 4182930 . - . mRNA SPAC25B8.13c ; systematic_id "SPAC25B8.13c" ; colour "2" ; gene "isp7 ||| SPAC25B8.13c" ; Alias "isp7" ; db_xref "SPD:19/19A07" ; GO "GO:0031142; induction of conjugation upon nitrogen starvation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed in response to nitrogen starvation; db_xref=PMID:7954893; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Eukaryotes only; date=20100827" ; primary_name "isp7" ; product "2-OG-Fe(II) oxygenase superfamily protein" ;
chromosome1 GeneDB mRNA 3002057 3004543 . + . mRNA SPAC31G5.10 ; systematic_id "SPAC31G5.10" ; colour "10" ; gene "eta2 ||| SPAC31G5.10" ; Alias "eta2" ; db_xref "SPD:35/35E09" ; GO "GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "eta2" ; product "Myb family protein Eta2" ;
chromosome1 GeneDB mRNA 436214 438369 . + . mRNA SPAC13C5.07 ; systematic_id "SPAC13C5.07" ; colour "2" ; db_xref "SPD:40/40H02" ; Alias "rad32" ; synonym "mre11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA damage checkpoint defects, S-phase; cv=phenotype; qualifier=deletion; residue=D25A|D65N|H134N; db_xref=PMID:19211838; date=20090428 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12944481; date=20100705 ||| term=phenotype, meiosis defects; cv=phenotype; qualifier=deletion; residue=D25A|D65N|H134N|H134L|D135V|(?528-649); db_xref=PMID:19211838; date=20090428 ||| term=phenotype, telomere maintenance defects; cv=phenotype; qualifier=deletion; residue=D25A|H134L|D135V|(?528-649); db_xref=PMID:19211838; date=20090428 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; qualifier=deletion; residue=D25A|D65N|H134L|D135V; db_xref=PMID:19211838; date=20090428 ||| term=phenotype, genome stability defects; cv=phenotype; qualifier=deletion; residue=D25A|D65N|H134N|H134L|D135V|(?528-649); db_xref=PMID:19211838; date=20090428 ||| term=phenotype, sensitive to DNA damaging agents; cv=phenotype; qualifier=deletion; residue=D25A|D65N|H134N|H134L|D135V|(?528-649); db_xref=PMID:19211838; date=20090428 ||| term=phenotype, sensitive to MMS; cv=phenotype; residue=W215C|N122S; db_xref=PMID:19211838; date=20090428 ||| term=phenotype, MRN complex formation, reduced; cv=phenotype; residue=W215C|N122S; db_xref=PMID:19211838; date=20090428 ||| term=phosphoesterase motif; qualifier=required; db_xref=PMID:9826747; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:15126332; date=19700101 ||| term=disease associated, neurological disorders; date=20090629 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=orthologous to S. cerevisiae YMR224C; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:9826747; date=20090213" ; GO "GO:0030870; Mre11 complex
GO:0008311; double-stranded DNA specific 3'-5' exodeoxyribonuclease activity
GO:0005515; protein binding
GO:0008310; single-stranded DNA specific 3'-5' exodeoxyribonuclease activity
GO:0000014; single-stranded DNA specific endodeoxyribonuclease activity
GO:0000077; DNA damage checkpoint
GO:0000729; DNA double-strand break processing
GO:0034613; cellular protein localization
GO:0000724; double-strand break repair via homologous recombination
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0006302; double-strand break repair
GO:0031573; intra-S DNA damage checkpoint
GO:0042138; meiotic DNA double-strand break formation
GO:0006311; meiotic gene conversion
GO:0007131; meiotic recombination
GO:0000723; telomere maintenance" ; primary_name "rad32" ; product "Rad32 nuclease" ;
chromosome1 GeneDB mRNA 1219667 1220847 . - . mRNA SPAC10F6.08c ; systematic_id "SPAC10F6.08c" ; colour "2" ; gene "SPAC10F6.08c ||| nht1" ; Alias "nht1" ; db_xref "SPD:17/17G07" ; GO "GO:0003677; DNA binding
GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "nht1" ; product "Ino80 complex HMG box protein Nht1" ;
chromosome1 GeneDB mRNA 4333170 4336787 . - . mRNA SPAC27F1.09c ; systematic_id "SPAC27F1.09c" ; colour "2" ; gene "prp10 ||| sap155 ||| SPAC27F1.09c" ; Alias "prp10" ; db_xref "SPD:48/48E04" ; synonym "sap155" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:9585501; date=20090213 ||| term=HEAT repeat; cv=protein_family; date=20061127 ||| term=phenotype, inviable; cv=phenotype; date=20061127 ||| term=gene expression, alternative splicing; db_xref=PMID:9837997; cv=gene_ex; date=20061127 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YMR288W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, gene structure updated; date=20100927" ; GO "GO:0005634; nucleus
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0000245; spliceosome assembly
GO:0003729; mRNA binding" ; primary_name "prp10" ; product "U2 snRNP-associated protein Sap155" ;
chromosome1 GeneDB mRNA 1569613 1571567 . - . mRNA SPAC1705.03c ; systematic_id "SPAC1705.03c" ; colour "2" ; gene "ecm33 ||| SPAC1705.03c ||| SPAC23H4.19" ; Alias "ecm33" ; db_xref "SPD:20/20C02" ; obsolete_name "SPAC1F2.01" ; synonym "SPAC23H4.19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR078W and YDR055W and YDR522C and YCL048W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, GPI attachment site; cv=pt_mod; evidence=IDA; db_xref=PMID:17230583; date=20100104 ||| term=gene expression, promoter contains CRE element; db_xref=PMID:20032302; date=20100624 ||| term=gene expression, promoter contains RLM1 element; db_xref=PMID:20032302; date=20100624 ||| term=target of Atf1; db_xref=PMID:20032302; date=20100624 ||| term=target of Mbx1; db_xref=PMID:20032302; date=20100624 ||| term=target of Pmk1; qualifier=indirect; db_xref=PMID:20032302; date=20100624 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:20032302; date=20100624 ||| term=gene expression, transcriptionally regulated by Mbx1; db_xref=PMID:20032302; date=20100624 ||| term=gene expression, transcriptionally regulated by Pmk1; qualifier=indirect; db_xref=PMID:20032302; date=20100624 ||| term=pathway, Mkh1-Pek1-Spm1 MAP kinase; db_xref=PMID:20032302; date=20100624" ; GO "GO:0031505; fungal-type cell wall organization
GO:0009897; external side of plasma membrane
GO:0009277; fungal-type cell wall
GO:0009986; cell surface
GO:0035556; intracellular signal transduction
GO:0055074; calcium homeostasis" ; primary_name "ecm33" ; product "cell wall protein Ecm33" ;
chromosome1 GeneDB mRNA 942217 943207 . + . mRNA SPAC1687.21 ; db_xref "SPD:43/43F01" ; systematic_id "SPAC1687.21" ; synonym "SPAC222.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR283W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC1687.21 ||| SPAC222.01" ; product "phosphoglycerate mutase family (predicted)" ; EC_number "5.4.2.1" ;
chromosome1 GeneDB mRNA 1181026 1182456 . - . mRNA SPAC22A12.14c ; db_xref "SPD:18/18A08" ; systematic_id "SPAC22A12.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR068W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human BDSC1 ortholog; date=20100718" ; colour "10" ; GO "GO:0005737; cytoplasm" ; gene "SPAC22A12.14c" ; product "BSD domain protein, unknown biological role" ;
chromosome1 GeneDB mRNA 5097690 5098816 . - . mRNA SPAC1250.03 ; systematic_id "SPAC1250.03" ; colour "7" ; gene "ubc14 ||| SPAC1250.03" ; Alias "ubc14" ; db_xref "SPD:07/07B12" ; GO "GO:0004842; ubiquitin conjugating enzyme activity
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR133W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "ubc14" ; product "ubiquitin conjugating enzyme Ubc14 (predicted)" ;
chromosome1 GeneDB mRNA 3382284 3383404 . + . mRNA SPAC8E11.03c ; systematic_id "SPAC8E11.03c" ; colour "2" ; db_xref "SPD:16/16E09" ; Alias "dmc1" ; synonym "dmp1" ; GO "GO:0000794; condensed nuclear chromosome
GO:0005524; ATP binding
GO:0003677; DNA binding
GO:0008094; DNA-dependent ATPase activity
GO:0003690; double-stranded DNA binding
GO:0000150; recombinase activity
GO:0003697; single-stranded DNA binding
GO:0006311; meiotic gene conversion
GO:0000709; meiotic joint molecule formation
GO:0007131; meiotic recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=RecA family; date=19700101 ||| term=helix-hairpin-helix; date=1970010 1 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=19700101 ||| term=genome organization, co- expressed with adjacent tandem gene; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YER179W; date=19700101 ||| term=disease associated, human infertility; db_xref=PMID:18566005; date=20080622 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20070321" ; primary_name "dmc1" ; product "RecA family ATPase Dmc1" ;
chromosome1 GeneDB mRNA 2229985 2231472 . - . mRNA SPAC18G6.07c ; systematic_id "SPAC18G6.07c" ; colour "2" ; gene "mra1 ||| SPAC18G6.07c" ; Alias "mra1" ; db_xref "SPD:16/16G05" ; GO "GO:0031167; rRNA methylation
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0000747; conjugation with cellular fusion
GO:0005880; nuclear microtubule
GO:0070037; rRNA (pseudouridine) methytransferase activity
GO: SF not requested remove parent should be requested by SGD; rRNA (pseudouridine-N1-)- methytransferase activity
GO: SF NEW; rRNA pseudouridine methylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9133664; date=19700101 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=orthologous to S. cerevisiae YLR186W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=disease associated, Bowen Conradi syndrome; date=20101121" ; primary_name "mra1" ; product "ribosome biogenesis protein Mra1" ;
chromosome1 GeneDB mRNA 2677140 2678677 . + . mRNA SPAC644.04 ; systematic_id "SPAC644.04" ; colour "2" ; gene "pct1 ||| SPAC644.04" ; Alias "pct1" ; db_xref "SPD:13/13F11" ; GO "GO:0006370; mRNA capping
GO:0042803; protein homodimerization activity
GO:0004651; polynucleotide 5'-phosphatase activity
GO:0005634; nucleus
GO:0005515; protein binding
GO:0031533; mRNA capping enzyme complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12455993; date=19700101 ||| term=orthologous to S. cerevisiae YPL228W and YMR180C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "pct1" ; product "RNA 5'-triphosphatase" ; EC_number "3.1.3.33" ;
chromosome1 GeneDB mRNA 725957 728242 . - . mRNA SPAC22G7.01c ; systematic_id "SPAC22G7.01c" ; colour "7" ; gene "SPAPJ696.03c ||| SPAC22G7.01c" ; Alias "SPAPJ696.03c" ; db_xref "SPD:27/27D04" ; synonym "SPAPJ696.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL029W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0034396; negative regulation of transcription from RNA polymerase II promoter in response to iron ion" ; primary_name "SPAPJ696.03c" ; product "iron responsive transcriptional regulator, peptidase family (predicted)" ; EC_number "3.4.11.9" ;
chromosome1 GeneDB mRNA 836285 838102 . + . mRNA SPAC2G11.13 ; systematic_id "SPAC2G11.13" ; colour "2" ; gene "atg22 ||| SPAC2G11.13" ; Alias "atg22" ; db_xref "SPD:25/25F02" ; GO "GO:0071627; integral to fungal-type vacuolar membrane
GO:0034639; amino acid efflux transmembrane transporter activity
GO:0032974; amino acid export from vacuole
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCL038C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=phenotype, sporulation defects; qualifier=triple_mutant; allele=SPAC3H1.09|SPBC16H5.07|SPAC2G11. 13|leucine_auxotroph; db_xref=PMID:19778961; date=20091126" ; primary_name "atg22" ; product "vacuolar amino acid efflux transporter Atg22" ;
chromosome1 GeneDB mRNA 1275515 1275900 . + . mRNA SPAPB17E12.05 ; systematic_id "SPAPB17E12.05" ; colour "7" ; gene "rpl3703 ||| rpl37 ||| SPAPB17E12.05" ; Alias "rpl3703" ; synonym "rpl37" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0019843; rRNA binding
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR185W and YDR500C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl3703" ; product "60S ribosomal protein L37 (predicted)" ;
chromosome1 GeneDB mRNA 4137266 4138718 . - . mRNA SPAC26H5.09c ; db_xref "SPD:17/17D12" ; systematic_id "SPAC26H5.09c" ; GO "GO:0006740; NADPH regeneration
GO:0016491; oxidoreductase activity
GO:0006740; NADPH regeneration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR315W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; product "gfo/idh/mocA family oxidoreductase (predicted)" ;
chromosome1 GeneDB mRNA 4874225 4874959 . + . mRNA SPAC4F10.20 ; systematic_id "SPAC4F10.20" ; colour "2" ; gene "grx1 ||| SPAC4F10.20" ; Alias "grx1" ; db_xref "SPD:08/08A07" ; GO "GO:0005829; cytosol
GO:0004602; glutathione peroxidase activity
GO:0004364; glutathione transferase activity
GO:0015035; protein disulfide oxidoreductase activity
GO:0034605; cellular response to heat
GO:0034599; cellular response to oxidative stress
GO:0033554; cellular response to stress
GO:0071294; cellular response to zinc ion
GO:0019430; removal of superoxide radicals" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL035C and YDR513W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=thioredoxin family; date=20081111" ; primary_name "grx1" ; product "glutaredoxin Grx1" ;
chromosome1 GeneDB mRNA 5383082 5383744 . + . mRNA SPAC3G6.02 ; systematic_id "SPAC3G6.02" ; colour "2" ; gene "dss1 ||| SPAC3G6.02" ; Alias "dss1" ; db_xref "SPD:02/02D11" ; GO "GO:0005737; cytoplasm
GO:0005643; nuclear pore
GO:0005634; nucleus
GO:0008541; proteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0031144; proteasome localization
GO:0006974; response to DNA damage stimulus
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10373512; date=19700101 ||| term=orthologous to S. cerevisiae YDR363W-A; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, developmental disorders; date=20091124 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:10373512; date=20100727" ; primary_name "dss1" ; product "mRNA export protein Dss1" ;
chromosome1 GeneDB mRNA 1712817 1713867 . + . mRNA SPAC664.06 ; systematic_id "SPAC664.06" ; colour "7" ; gene "rpl703 ||| rpl7 ||| SPAC664.06" ; Alias "rpl703" ; db_xref "SPD:13/13G06" ; obsolete_name "rpl7-3" ; synonym "rpl7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL076C and YPL198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=warning, ncRNA in intron; cv=warning; date=20100217" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; primary_name "rpl703" ; product "60S ribosomal protein L7 (predicted)" ;
chromosome1 GeneDB mRNA 2952301 2953675 . + . mRNA SPAPB24D3.03 ; systematic_id "SPAPB24D3.03" ; colour "7" ; GO "GO:0019627; urea metabolism
GO:0006527; arginine catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC11D3.09 and SPBC8E4.03; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAPB24D3.03" ; product "agmatinase (predicted)" ; EC_number "3.5.3.-" ;
chromosome1 GeneDB mRNA 1143077 1145223 . + . mRNA SPAC56F8.10 ; systematic_id "SPAC56F8.10" ; colour "2" ; gene "met9 ||| met5 ||| SPAC56F8.10" ; Alias "met9" ; db_xref "SPD:36/36E12" ; synonym "met5" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=name description, named from map position, met5; date=20100611" ; GO "GO:0005739; mitochondrion
GO:0004489; methylenetetrahydrofolate reductase (NADPH) activity
GO:0009086; methionine biosynthetic process" ; primary_name "met9" ; product "methylenetetrahydrofolate reductase Met9" ; EC_number "1.5.1.20" ;
chromosome1 GeneDB mRNA 2086393 2088305 . - . mRNA SPAC3C7.11c ; systematic_id "SPAC3C7.11c" ; colour "2" ; gene "cnx1 ||| SPAC3C7.11c" ; Alias "cnx1" ; db_xref "SPD:35/35B11" ; synonym "cal1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, cells can become independent of the essential calnexin; db_xref=PMID:14963023; date=20060420 ||| term=misc, essential function does not appear to reside in its role in the folding or retention of misfolded proteins; db_xref=PMID:14984369; cv=misc; date=20060420 ||| term=modification, glycosylated; cv=pt_mod; db_xref=PMID:7876257; date=20060420 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7876257; date=20060420 ||| term=misc functional group, chaperone; date=19700101 ||| term=orthologous to S. cerevisiae YAL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, inherited protein folding defects; date=20090428 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005509; calcium ion binding
GO:0005515; protein binding
GO:0030433; ER-associated protein catabolic process
GO:0034975; protein folding in the endoplasmic reticulum
GO:0034605; cellular response to heat
GO:0006915; apoptosis
GO:0006515; misfolded or incompletely synthesized protein catabolic process" ; primary_name "cnx1" ; product "calnexin Cnx1" ;
chromosome1 GeneDB mRNA 683990 686300 . + . mRNA SPAC22F3.10c ; systematic_id "SPAC22F3.10c" ; colour "2" ; gene "gcs1 ||| apd1 ||| SPAC22F3.10c" ; Alias "gcs1" ; db_xref "KEGG:MAP00251; ||| KEGG:MAP00480; ||| SPD:28/28B03" ; synonym "apd1" ; GO "GO:0006750; glutathione biosynthesis
GO:0071276; cellular response to cadmium ion
GO:0004357; glutamate-cysteine ligase activity
GO:0017109; glutamate-cysteine ligase complex
GO:0046911; metal chelating activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL101C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "gcs1" ; product "glutamate-cysteine ligase Gcs1" ; EC_number "6.3.2.2" ;
chromosome1 GeneDB mRNA 1149911 1150216 . + . mRNA SPAC56F8.13 ; db_xref "SPD:01/01E04" ; systematic_id "SPAC56F8.13" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPAC56F8.13" ; product "dubious" ;
chromosome1 GeneDB mRNA 4549809 4551242 . + . mRNA SPAC637.06 ; db_xref "SPD:15/15G11" ; systematic_id "SPAC637.06" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0042125; protein amino acid galactosylation" ; gene "SPAC637.06" ; product "alpha-1,2-galactosyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB mRNA 786895 789164 . - . mRNA SPAC4G8.13c ; systematic_id "SPAC4G8.13c" ; colour "2" ; gene "prz1 ||| SPAC4G8.13c" ; Alias "prz1" ; db_xref "SPD:27/27F05" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0043565; sequence-specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006874; calcium ion homeostasis
GO:0019722; calcium-mediated signaling
GO:0030644; chloride ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; db_xref=PMID:12637524; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=target is Ppb1; qualifier=phosphorylated_by; db_xref=PMID:12637524; cv=pt_mod; date=19700101 ||| term=gene expression, transcriptionally regulates pmc1; db_xref=PMID:12637524; cv=gene_ex; date=19700101 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:12637524; cv=localization; date=19700101 ||| term=orthologous to S. cerevisiae YNL027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Prz1; db_xref=PMID:16928959; date=20090316 ||| term=gene expression, promoter contains CDRE; db_xref=PMID:16928959; date=20090316 ||| term=DNA binding specificity, binds CDRE 5'-AGCCTC-3'; evidence=IDA; db_xref=PMID:16928959; date=20090316" ; primary_name "prz1" ; product "calcineurin responsive transcription factor Prz1" ;
chromosome1 GeneDB mRNA 1049005 1051118 . + . mRNA SPAC23C4.12 ; systematic_id "SPAC23C4.12" ; colour "2" ; gene "hhp2 ||| SPAC23C4.12" ; Alias "hhp2" ; db_xref "SPD:23/23D12" ; GO "GO:0033551; monopolin complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006282; regulation of DNA repair
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0045143; homologous chromosome segregation
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=casein kinase I subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YPL204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "hhp2" ; product "serine/threonine protein kinase Hhp2" ;
chromosome1 GeneDB mRNA 1232288 1234069 . - . mRNA SPAC10F6.14c ; db_xref "SPD:45/45C11" ; systematic_id "SPAC10F6.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0016301; kinase activity
GO:0034619; chaperone-mediated protein complex assembly
GO:0048197; cellular macromolecular complex assembly" ; gene "SPAC10F6.14c" ; product "ABC1 kinase family protein (predicted)" ;
chromosome1 GeneDB mRNA 4664351 4668366 . + . mRNA SPAC144.06 ; systematic_id "SPAC144.06" ; colour "7" ; gene "apl5 ||| SPAC144.06" ; Alias "apl5" ; db_xref "SPD:46/46H12" ; GO "GO:0006896; Golgi to vacuole transport
GO:0030123; AP-3 adaptor complex
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL195W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=adaptin family; date=20100902" ; primary_name "apl5" ; product "AP-3 adaptor complex subunit Apl5 (predicted)" ;
chromosome1 GeneDB mRNA 2346089 2347246 . - . mRNA SPAC17G8.03c ; systematic_id "SPAC17G8.03c" ; colour "2" ; gene "dpb3 ||| SPAC17G8.03c" ; Alias "dpb3" ; db_xref "SPD:06/06F04" ; GO "GO:0005515; protein binding
GO:0006261; DNA replication
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0003887; epsilon DNA polymerase activity
GO:0008622; epsilon DNA polymerase complex
GO:0034613; cellular protein localization
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15388803; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:15388803; date=20100727 ||| term=phenotype, multinucleate; qualifier=deletion; db_xref=PMID:15388803; date=20100727 ||| term=histone fold; db_xref=PMID:15388803; date=19700101 ||| term=orthologous to S. cerevisiae YBR278W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human POLE4 ortholog; date=20091020 ||| term=species distribution, conserved in Archaea; date=20081109" ; primary_name "dpb3" ; product "DNA polymerase epsilon subunit Dpb3" ;
chromosome1 GeneDB mRNA 2759155 2759709 . - . mRNA SPAC6F6.19 ; db_xref "PMID:18488015" ; systematic_id "SPAC6F6.19" ; controlled_curation "term=orthologous to S. cerevisiae YLR271W; date=20080102 ||| term=G-patch domain; date=20080102 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=human CCDC75 ortholog; date=20100728" ; colour "10" ; gene "SPAC6F6.19" ; product "RNA-binding protein, G-patch type" ;
chromosome1 GeneDB mRNA 4732068 4733868 . - . mRNA SPAC458.02c ; db_xref "SPD:26/26A02" ; systematic_id "SPAC458.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR198C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0030529; ribonucleoprotein complex
GO:0016071; mRNA metabolism" ; gene "SPAC458.02c" ; product "mRNP complex (predicted)" ;
chromosome1 GeneDB mRNA 5320106 5320605 . - . mRNA SPAP8A3.04c ; systematic_id "SPAP8A3.04c" ; colour "2" ; gene "hsp9 ||| scf1 ||| SPAP8A3.04c" ; Alias "hsp9" ; synonym "scf1" ; GO "GO:0000915; cytokinesis, contractile ring formation
GO:0034605; cellular response to heat
GO:0007009; plasma membrane organization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL014W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure conflict; db_xref=PMID:8654972; date=20100810" ; primary_name "hsp9" ; product "heat shock protein Hsp9" ;
chromosome1 GeneDB mRNA 3348247 3352396 . - . mRNA SPAC26A3.09c ; systematic_id "SPAC26A3.09c" ; colour "7" ; gene "SPAC26A3.09c ||| rga2" ; Alias "rga2" ; db_xref "SPD:39/39C11" ; GO "GO:0005100; Rho GTPase activator activity
GO:0032319; regulation of Rho GTPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:11737264; date=20100917 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL115C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rga2" ; product "Rho-type GTPase activating protein Rga2 (predicted)" ; reserved_name "rga2" ;
chromosome1 GeneDB mRNA 5438961 5439462 . + . mRNA SPAC29B12.13 ; db_xref "SPD:03/03C04" ; systematic_id "SPAC29B12.13" ; GO "GO:0051907; S-(hydroxymethyl)glutathione synthase activity
GO:0046294; formaldehyde catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "7" ; gene "SPAC29B12.13" ; product "S-(hydroxymethyl)glutathione synthase activity (predicted)" ;
chromosome1 GeneDB mRNA 631523 633061 . - . mRNA SPAC1F3.07c ; systematic_id "SPAC1F3.07c" ; colour "2" ; gene "rsc58 ||| SPAC1F3.07c" ; Alias "rsc58" ; db_xref "SPD:22/22C09" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016586; RSC complex
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, chromosome segregation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to Brefeldin A; db_xref=PMID:18622392; qualifier=deletion; cv=phenotype; date=20080717 ||| term=phenotype, growth defect, slow growth; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=gene expression, transcriptionally regulates genes involved in vesicle mediated transport; db_xref=PMID:18622392; cv=gene_ex; date=20080717 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=bromodomain; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YLR033W; date=19700101" ; primary_name "rsc58" ; product "RSC complex subunit Rsc58" ;
chromosome1 GeneDB mRNA 1163745 1165515 . - . mRNA SPAC22A12.06c ; db_xref "SPD:44/44B09" ; systematic_id "SPAC22A12.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR280C and YMR222C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0017171; serine hydrolase activity
GO:0006629; lipid metabolism
GO:0044248; cellular catabolic process" ; gene "SPAC22A12.06c" ; product "serine hydrolase" ;
chromosome1 GeneDB mRNA 2913008 2913184 . - . mRNA SPAC513.03 ; systematic_id "SPAC513.03" ; colour "2" ; gene "mfm2 ||| SPAC513.03" ; Alias "mfm2" ; db_xref "SPD:01/01A07" ; GO "GO:0032005; signal transduction during conjugation with cellular fusion
GO:0000772; mating pheromone activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, M-factor precursor; cv=name_description; date=20090729" ; primary_name "mfm2" ; product "M-factor precursor Mfm2" ;
chromosome1 GeneDB mRNA 3392033 3392742 . + . mRNA SPAC959.10 ; systematic_id "SPAC959.10" ; colour "7" ; gene "SPAC959.10 ||| sen15" ; Alias "sen15" ; db_xref "SPD:52/52C07" ; GO "GO:0005741; mitochondrial outer membrane
GO:0000214; tRNA-intron endonuclease complex
GO:0000213; tRNA-intron endonuclease activity
GO:0000379; tRNA-type intron splice site recognition and cleavage" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR059W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sen15" ; product "tRNA-splicing endonuclease subunit Sen15 (predicted)" ;
chromosome1 GeneDB mRNA 5417460 5418973 . - . mRNA SPAC29B12.06c ; systematic_id "SPAC29B12.06c" ; colour "2" ; gene "rcd1 ||| SPAC29B12.06c" ; Alias "rcd1" ; db_xref "SPD:11/11B12" ; GO "GO:0030014; CCR4-NOT complex
GO:0003723; RNA binding
GO:0006354; RNA elongation
GO:0010515; negative regulation of induction of conjugation upon nitrogen starvation
GO:0006402; mRNA catabolism
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0000122; negative regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL288W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rcd1" ; product "RNA-binding protein, CCR4-NOT complex subunit Rcd1" ;
chromosome1 GeneDB mRNA 544127 546240 . - . mRNA SPAC2F7.07c ; systematic_id "SPAC2F7.07c" ; colour "2" ; gene "SPAC2F7.07c ||| cph2 ||| rco1" ; Alias "cph2" ; db_xref "SPD:45/45H11" ; synonym "rco1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YMR075W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016575; histone deacetylation
GO:0006338; chromatin remodeling
GO:0032221; Clr6 histone deacetylase complex II'
GO:0032221; Clr6 histone deacetylase complex II'
GO:0019787; small conjugating protein ligase activity" ; primary_name "cph2" ; product "Clr6 histone deacetylase associated PHD protein- 2 Cph2" ;
chromosome1 GeneDB mRNA 3072861 3074167 . + . mRNA SPAC24C9.14 ; systematic_id "SPAC24C9.14" ; colour "2" ; db_xref "SPD:14/14D04" ; Alias "otu1" ; synonym "mug141" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL044C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=name description, OTU family; cv=name_description; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human YOD1 ortholog; date=20101001" ; primary_name "otu1" ; product "ubiquitin-specific cysteine protease, OTU family, Otu1" ;
chromosome1 GeneDB mRNA 3807221 3808706 . - . mRNA SPAC1556.08c ; systematic_id "SPAC1556.08c" ; colour "2" ; gene "SPAC1556.08c ||| SPAC1F12.01c ||| cbs2" ; Alias "cbs2" ; db_xref "SPD:19/19D12" ; synonym "SPAC1F12.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL115W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0030295; protein kinase activator activity
GO:0006109; regulation of carbohydrate metabolism
GO:0045990; regulation of transcription by carbon catabolites
GO:0007165; signal transduction
GO:0032569; specific transcription from RNA polymerase II promoter" ; primary_name "cbs2" ; product "protein kinase activator (predicted)" ;
chromosome1 GeneDB mRNA 2732468 2733731 . - . mRNA SPAC6F6.02c ; systematic_id "SPAC6F6.02c" ; colour "2" ; gene "pof5 ||| SPAC6F6.02c" ; Alias "pof5" ; db_xref "SPD:15/15H08" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR306C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "pof5" ; product "F-box protein Pof5" ;
chromosome1 GeneDB mRNA 2160523 2163930 . + . mRNA SPAC23C11.15 ; systematic_id "SPAC23C11.15" ; colour "2" ; gene "pst2 ||| SPAC23C11.15" ; Alias "pst2" ; db_xref "SPD:48/48C01" ; GO "GO:0032221; Clr6 histone deacetylase complex
GO:0032221; Clr6 histone deacetylase complex II'
GO:0005634; nucleus
GO:0005515; protein binding
GO:0003714; transcription corepressor activity
GO:0006338; chromatin remodeling
GO:0006342; chromatin silencing
GO:0030261; chromosome condensation
GO:0016575; histone deacetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SIN3 family co-repressor; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17450151; date=19700101 ||| term=orthologous to S. cerevisiae YOL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pst2" ; product "Clr6 histone deacetylase complex subunit Pst2" ;
chromosome1 GeneDB mRNA 2791098 2792826 . + . mRNA SPAC1805.10 ; db_xref "SPD:25/25E04" ; systematic_id "SPAC1805.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1805.10" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 502711 504093 . - . mRNA SPAC227.03c ; db_xref "SPD:17/17E11" ; systematic_id "SPAC227.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL006W and YEL006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=19700101" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0051724; NAD transporter activity
GO:0043132; NAD transport
GO:0006839; mitochondrial pyruvate transport" ; gene "SPAC227.03c" ; product "mitochondrial NAD+ transporter (predicted)" ;
chromosome1 GeneDB mRNA 3226929 3228192 . + . mRNA SPAC6G10.06 ; db_xref "SPD:20/20B12" ; systematic_id "SPAC6G10.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060106 ||| term=orthologous to S. cerevisiae YHR009C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0007126; meiosis" ; gene "SPAC6G10.06" ; product "FAD-dependent amino acid oxidase (predicted)" ;
chromosome1 GeneDB mRNA 4410354 4411233 . - . mRNA SPAC29E6.05c ; systematic_id "SPAC29E6.05c" ; colour "7" ; gene "SPAC30.09c ||| SPAC29E6.05c" ; Alias "SPAC30.09c" ; db_xref "SPD:06/06A03" ; synonym "SPAC30.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008113; protein-methionine-S-oxide reductase activity
GO:0044267; cellular protein metabolic process
GO:0034599; cellular response to oxidative stress" ; primary_name "SPAC30.09c" ; product "peptide methionine sulfoxide reductase (predicted)" ; EC_number "1.8.4.11" ;
chromosome1 GeneDB mRNA 1631283 1631597 . + . mRNA SPAP27G11.16 ; systematic_id "SPAP27G11.16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAP27G11.16" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2712775 2718330 . - . mRNA SPAPB2B4.04c ; systematic_id "SPAPB2B4.04c" ; synonym "pmc1" ; colour "2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, deafness ; date=20061010 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=warning, gene name conflict; date=20091118" ; GO "GO:0006816; calcium ion transport
GO:0005388; calcium-transporting ATPase activity
GO:0006874; cellualr calcium ion homeostasis
GO:0006874; cellular calcium ion homeostasis
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0005524; ATP binding
GO:0005509; calcium ion binding
GO:0006874; cellular calcium ion homeostasis
GO:0070588; transmembrane calcium ion transport" ; gene "SPAPB2B4.04c" ; product "vacuolar calcium transporting P-type ATPase P2 type, Pmc1" ; EC_number "3.6.3.8" ;
chromosome1 GeneDB mRNA 811592 814177 . - . mRNA SPAC2G11.03c ; systematic_id "SPAC2G11.03c" ; colour "2" ; gene "vps45 ||| SPAC2G11.03c" ; Alias "vps45" ; db_xref "SPD:26/26C08" ; GO "GO:0000149; SNARE binding
GO:0006904; vesicle docking during exocytosis
GO:0006906; vesicle fusion
GO:0006895; Golgi to endosome transport
GO:0006896; Golgi to vacuole transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to valproic acid; allele=vas1-1; db_xref=PMID:17287513; date=20100917 ||| term=orthologous to S. cerevisiae YGL095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps45" ; product "vacuolar sorting protein Vps45" ;
chromosome1 GeneDB mRNA 1290971 1293449 . + . mRNA SPAC1565.01 ; db_xref "SPD:08/08F08" ; systematic_id "SPAC1565.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNR018W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC1565.01" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 5229798 5230900 . + . mRNA SPAC14C4.16 ; systematic_id "SPAC14C4.16" ; colour "2" ; gene "dad3 ||| SPAC14C4.16" ; Alias "dad3" ; db_xref "SPD:52/52C08" ; GO "GO:0042729; DASH complex
GO:0007052; mitotic spindle organization and biogenesis
GO:0031134; sister chromatid biorientation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR233W-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "dad3" ; product "DASH complex subunit Dad3" ;
chromosome1 GeneDB mRNA 2848570 2849231 . - . mRNA SPAC3F10.15c ; systematic_id "SPAC3F10.15c" ; colour "2" ; gene "spo12 ||| SPAC3F10.15c" ; Alias "spo12" ; db_xref "SPD:01/01C02" ; GO "GO:0007346; regulation of progression through mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11085271; date=19700101 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YHR152W and YGR230W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "spo12" ; product "Spo12 family protein" ;
chromosome1 GeneDB mRNA 1139130 1140325 . + . mRNA SPAC56F8.08 ; systematic_id "SPAC56F8.08" ; colour "2" ; gene "mud1 ||| ucp1 ||| ddi1 ||| SPAC56F8.08" ; note "N terminal exon possibly incorrect; possibly spliced upstream to SPAC56F8.11c" ; Alias "mud1" ; db_xref "SPD:52/52A12" ; synonym "ucp1 ||| ddi1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YER143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; plasma membrane
GO:0000149; SNARE binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0017157; regulation of exocytosis
GO:0006511; ubiquitin-dependent protein catabolism
GO:0031593; polyubiquitin binding" ; primary_name "mud1" ; product "UBA domain protein Mud1" ;
chromosome1 GeneDB mRNA 485772 488686 . - . mRNA SPAC24H6.03 ; systematic_id "SPAC24H6.03" ; colour "2" ; gene "cul3 ||| pcu3 ||| SPAC24H6.03" ; Alias "cul3" ; db_xref "SPD:40/40H10" ; synonym "pcu3" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=modification, neddylated; db_xref=PMID:15769255; cv=pt_mod; date=20100309 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9990507; date=20100708" ; GO "GO:0019005; SCF ubiquitin ligase complex
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle" ; primary_name "cul3" ; product "cullin 3" ;
chromosome1 GeneDB mRNA 2828666 2829184 . - . mRNA SPAC3F10.07c ; systematic_id "SPAC3F10.07c" ; colour "7" ; gene "SPAC3F10.07c ||| mug91" ; Alias "mug91" ; db_xref "SPD:05/05B06" ; GO "GO:0042406; extrinsic to endoplasmic reticulum membrane
GO:0031211; palmitoyltransferase complex
GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0018345; protein palmitoylation
GO:0006612; protein targeting to membrane" ; controlled_curation "term=orthologous to S. cerevisiae YOL110W; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=genome organization, co- expressed with adjacent gene; qualifier=predicted; cv=genome_org; date=20091113 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; primary_name "mug91" ; product "palmitoyltransferase complex Erf4 (predicted)" ;
chromosome1 GeneDB mRNA 3037718 3039659 . + . mRNA SPAC1786.03 ; systematic_id "SPAC1786.03" ; colour "2" ; gene "cut11 ||| SPAC1786.03 ||| SPAC24C9.01" ; Alias "cut11" ; db_xref "SPD:36/36H02" ; synonym "SPAC24C9.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9763447; date=19700101 ||| term=phenotype, spindle defects, monopolar spindle; qualifier=during_mitosis; db_xref=PMID:9763447; date=20100909 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:9763447; date=20100909 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118" ; GO "GO:0031965; nuclear membrane
GO:0005816; spindle pole body
GO:0090307; spindle assembly involved in mitosis
GO:0043495; protein anchor
GO:0071790; establishment of spindle pole body localization at the nuclear envelope" ; primary_name "cut11" ; product "spindle pole body docking protein Cut11" ;
chromosome1 GeneDB mRNA 1553651 1554807 . - . mRNA SPAC167.04 ; systematic_id "SPAC167.04" ; colour "7" ; gene "pam17 ||| SPAC167.04" ; Alias "pam17" ; db_xref "SPD:43/43C04" ; GO "GO:0001405; presequence translocase-associated import motor
GO:0030150; protein import into mitochondrial matrix" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR065C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "pam17" ; product "TIM23 translocase complex-associated motor subunit Pam17 (predicted)" ; reserved_name "pam17" ;
chromosome1 GeneDB mRNA 4443078 4444196 . + . mRNA SPAC9E9.04 ; db_xref "SPD:11/11B10" ; systematic_id "SPAC9E9.04" ; controlled_curation "term=orthologous to S. cerevisiae YKL065C and YMR040W and YDL072C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006888; ER to Golgi vesicle-mediated transport" ; gene "SPAC9E9.04" ; product "bcap family homolog (predicted)" ;
chromosome1 GeneDB mRNA 1371600 1372480 . - . mRNA SPAC57A10.14 ; systematic_id "SPAC57A10.14" ; colour "2" ; gene "sgf11 ||| SPAC57A10.14" ; db_xref "SPD:52/52E02" ; Alias "sgf11" ; GO "GO:0016573; histone acetylation
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0016578; histone deubiquitination
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL047W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, new gene; date=20050101" ; primary_name "sgf11" ; product "SAGA complex subunit Sgf11" ;
chromosome1 GeneDB mRNA 3357817 3360957 . - . mRNA SPAC26A3.12c ; systematic_id "SPAC26A3.12c" ; colour "2" ; gene "dhp1 ||| SPAC26A3.12c ||| rat1" ; note "CARE dph1 is in same cosmid" ; Alias "dhp1" ; db_xref "SPD:29/29G08" ; synonym "rat1" ; GO "GO:0005634; nucleus
GO:0000070; mitotic sister chromatid segregation
GO:0006396; RNA processing
GO:0004534; 5'-3' exoribonuclease activity
GO:0006364; 35S primary transcript processing
GO:0030846; transcription termination from Pol II promoter, RNA polymerase(A) coupled
GO:0005634; nucleus
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR048C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8190062; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dhp1" ; product "5'-3' exoribonuclease Dhp1" ; EC_number "3.1.11.-" ;
chromosome1 GeneDB mRNA 3214541 3218286 . - . mRNA SPAC6G10.02c ; systematic_id "SPAC6G10.02c" ; colour "2" ; gene "tea3 ||| SPAC6G10.02c" ; Alias "tea3" ; db_xref "SPD:30/30D12" ; GO "GO:0051285; cell cortex of cell tip
GO:0032153; cell division site
GO:0061161; regulation of establishment of bipolar cell polarity resulting in cell shape
GO:0032187; contractile ring localizatio involved in cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kelch repeat protein; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YHR158C and YGR238C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Tip Elongation Aberrant; cv=name_description; date=19700101 ||| term=phenotype, cell morphology, branched; qualifier=weak; db_xref=PMID:12007420; date=20100809" ; primary_name "tea3" ; product "cell end marker Tea3" ;
chromosome1 GeneDB mRNA 2999546 3000975 . - . mRNA SPAC31G5.09c ; systematic_id "SPAC31G5.09c" ; colour "2" ; gene "spk1 ||| SPAC31G5.09c" ; Alias "spk1" ; db_xref "SPD:32/32E07" ; GO "GO:0004707; MAP kinase activity
GO:0000751; cell cycle arrest in response to pheromone
GO:0006468; protein amino acid phosphorylation
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0000165; MAPKKK cascade
GO:0005634; nucleus
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:8413241; date=19700101 ||| term=orthologous to S. cerevisiae YBL016W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spk1" ; product "MAP kinase Spk1" ;
chromosome1 GeneDB mRNA 3436248 3436797 . + . mRNA SPAC3H5.05c ; systematic_id "SPAC3H5.05c" ; colour "7" ; gene "rps1401 ||| rps14-1 ||| rps14 ||| SPAC3H5.05c" ; Alias "rps1401" ; db_xref "SPD:41/41B08" ; synonym "rps14-1 ||| rps14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR031C and YJL191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0042254; ribosome biogenesis" ; primary_name "rps1401" ; product "40S ribosomal protein S14 (predicted)" ;
chromosome1 GeneDB mRNA 4053681 4056017 . - . mRNA SPAC19G12.07c ; systematic_id "SPAC19G12.07c" ; colour "7" ; gene "rsd1 ||| SPAC19G12.07c" ; db_xref "SPD:46/46F08" ; Alias "rsd1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=human RBM39 ortholog; date=20080624 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "rsd1" ; product "RNA-binding protein Rsd1 (predicted)" ;
chromosome1 GeneDB mRNA 4104885 4105709 . - . mRNA SPAC23A1.16c ; db_xref "SPD:06/06E06" ; systematic_id "SPAC23A1.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER139C; date=19700101 ||| term=human RPAP2 ortholog; db_xref=PMID:18408053; date=20080416 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0043175; RNA polymerase core enzyme binding
GO:0030528; transcription regulator activity
GO:0006366; transcription from RNA polymerase II promoter
GO:0008420; CTD phosphatase activity
GO:0070940; dephosphorylation of RNA polymerase II C-terminal domain" ; gene "SPAC23A1.16c" ; product "RNA polymerase II CTD phosphatase Rtr1 (predicted)" ;
chromosome1 GeneDB mRNA 4949138 4950071 . - . mRNA SPAC1B3.11c ; systematic_id "SPAC1B3.11c" ; colour "2" ; gene "ypt4 ||| SPAC1B3.11c" ; Alias "ypt4" ; db_xref "SPD:43/43B04" ; GO "GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0060627; regulation of vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Ypt subfamily; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ypt4" ; product "GTPase Ypt4" ;
chromosome1 GeneDB mRNA 3496487 3497386 . - . mRNA SPAC328.10c ; systematic_id "SPAC328.10c" ; colour "7" ; gene "rps502 ||| rps5-2 ||| SPAC328.10c" ; Alias "rps502" ; db_xref "SPD:12/12C11" ; synonym "rps5-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps502" ; product "40S ribosomal protein S5 (predicted)" ;
chromosome1 GeneDB mRNA 807962 812140 . + . mRNA SPAC2G11.02 ; systematic_id "SPAC2G11.02" ; colour "7" ; gene "urb2 ||| SPAC2G11.02" ; Alias "urb2" ; db_xref "SPD:39/39D12" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "urb2" ; product "ribosome biogenesis protein Urb2 (predicted)" ;
chromosome1 GeneDB mRNA 4613627 4617099 . + . mRNA SPAC1093.03 ; systematic_id "SPAC1093.03" ; colour "7" ; gene "SPAC1093.03" ; note "GAG acceptor" ; db_xref "SPD:47/47B03" ; GO "GO:0019898; extrinsic to membrane
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0017120; polyphosphoinositide phosphatase activity
GO:0000753; cellular morphogenesis during conjugation with cellular fusion
GO:0030384; phosphoinositide metabolism
GO:0048015; phosphoinositide-mediated signaling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL325C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; date=20080502" ; product "inositol polyphosphate phosphatase (predicted)" ;
chromosome1 GeneDB mRNA 4616462 4618421 . - . mRNA SPAC1093.04c ; db_xref "SPD:45/45G10" ; systematic_id "SPAC1093.04c" ; colour "7" ; GO "GO:0004810; tRNA adenylyltransferase activity
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER168C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20100309 ||| term=warning, multiple translational start sites possible; cv=warning; date=20100309" ; gene "SPAC1093.04c" ; product "tRNA nucleotidyltransferase (predicted)" ; EC_number "2.7.7.25" ;
chromosome1 GeneDB mRNA 515797 517397 . + . mRNA SPAC227.12 ; db_xref "SPD:23/23D05" ; systematic_id "SPAC227.12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; gene "SPAC227.12" ; product "U4/U6 x U5 tri-snRNP complex subunit Prp4 family (predicted)" ;
chromosome1 GeneDB mRNA 719411 721410 . + . mRNA SPAC1296.06 ; systematic_id "SPAC1296.06" ; colour "7" ; gene "SPAC1296.06 ||| tah18" ; Alias "tah18" ; db_xref "SPD:46/46C01" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0050660; FAD binding
GO:0010181; FMN binding
GO:0050661; NADP binding
GO:0016491; oxidoreductase activity
GO:0016226; iron-sulfur cluster assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human NDOR1 ortholog; date=20081124" ; primary_name "tah18" ; product "NADPH-dependent diflavin oxidoreductase, involved in iron-sulphur cluster assembly Tah18 (predicted)" ;
chromosome1 GeneDB mRNA 5148843 5152414 . + . mRNA SPAC26F1.13c ; systematic_id "SPAC26F1.13c" ; colour "7" ; gene "SPAC26F1.13c ||| lrs1" ; Alias "lrs1" ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:30/30D04" ; GO "GO:0005737; cytoplasm
GO:0004823; leucine-tRNA ligase activity
GO:0006429; leucyl-tRNA aminoacylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL160W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "lrs1" ; product "cytoplasmic leucine-tRNA ligase Lrs1 (predicted)" ; EC_number "6.1.1.4" ;
chromosome1 GeneDB mRNA 953106 954207 . + . mRNA SPAC222.06 ; systematic_id "SPAC222.06" ; colour "7" ; gene "mak16 ||| SPAC222.06" ; Alias "mak16" ; db_xref "SPD:13/13F05" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mak16" ; product "nuclear HMG-like acidic protein Mak16 (predicted)" ;
chromosome1 GeneDB mRNA 1186253 1187901 . + . mRNA SPAC22A12.16 ; systematic_id "SPAC22A12.16" ; colour "7" ; gene "SPAC22A12.16" ; note "Direction of reaction forming acetyl-CoA and oxaloacetate (PMID:10794176)" ; db_xref "KEGG:MAP00020; ||| SPD:24/24H08" ; GO "GO:0005737; cytoplasm
GO:0003878; ATP citrate synthase activity
GO:0006085; acetyl-CoA biosynthesis
GO:0006101; citrate metabolism
GO:0006633; fatty acid biosynthesis
GO:0006099; tricarboxylic acid cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "ATP-citrate synthase subunit 2 (predicted)" ; EC_number "2.3.3.8" ;
chromosome1 GeneDB mRNA 2381690 2382200 . + . mRNA SPAC22H10.13 ; systematic_id "SPAC22H10.13" ; colour "2" ; gene "zym1 ||| SPAC22H10.13" ; Alias "zym1" ; db_xref "SPD:01/01A04" ; GO "GO:0008270; zinc ion binding
GO:0006882; zinc ion homeostasis
GO:0006878; copper ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "zym1" ; product "metallothionein Zym1" ;
chromosome1 GeneDB mRNA 4176493 4178196 . - . mRNA SPAC25B8.12c ; db_xref "SPD:43/43E10" ; systematic_id "SPAC25B8.12c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0016791; phosphoric monoester hydrolase activity" ; colour "10" ; gene "SPAC25B8.12c" ; product "nucleotide-sugar phosphatase (predicted)" ;
chromosome1 GeneDB mRNA 464542 468283 . + . mRNA SPAC24H6.11c ; db_xref "SPD:29/29F09" ; systematic_id "SPAC24H6.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; gene "SPAC24H6.11c" ; product "sulfate transporter (predicted)" ;
chromosome1 GeneDB mRNA 3347053 3348080 . + . mRNA SPAC26A3.08 ; systematic_id "SPAC26A3.08" ; colour "2" ; gene "smb1 ||| smb ||| SPAC26A3.08" ; Alias "smb1" ; db_xref "SPD:05/05A04" ; synonym "smb" ; controlled_curation "term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YER029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005685; snRNP U1
GO:0005681; spliceosome complex
GO:0000395; nuclear mRNA 5'-splice site recognition" ; primary_name "smb1" ; product "Sm snRNP core protein Smb1" ;
chromosome1 GeneDB mRNA 3716643 3720963 . + . mRNA SPAC15A10.16 ; systematic_id "SPAC15A10.16" ; colour "2" ; gene "bud6 ||| aip3 ||| fat1 ||| SPAC15A10.16 ||| SPAC15E1.01" ; Alias "bud6" ; db_xref "SPD:30/30F12" ; synonym "aip3 ||| fat1 ||| SPAC15E1.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR319C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=localization dependent on vesicular traffic; date=20090826 ||| term=localization dependent on Tea1; date=20090826 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003779; actin binding
GO:0005515; protein binding
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0005515; protein binding
GO:0030478; actin cap" ; primary_name "bud6" ; product "actin interacting protein 3 homolog Bud6" ;
chromosome1 GeneDB mRNA 2815681 2818597 . + . mRNA SPAC1B2.05 ; systematic_id "SPAC1B2.05" ; colour "2" ; gene "mcm5 ||| nda4 ||| SPAC3F10.01 ||| SPAC1B2.05" ; Alias "mcm5" ; db_xref "SPD:28/28A08" ; synonym "nda4 ||| SPAC3F10.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YLR274W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:8298187; date=20100727" ; GO "GO:0006270; DNA replication initiation
GO:0042555; MCM complex
GO:0000084; S phase of mitotic cell cycle
GO:0005634; nucleus
GO:0005656; pre-replicative complex
GO:0005515; protein binding
GO:0006271; DNA strand elongation during DNA replication
GO:0004003; ATP-dependent DNA helicase activity
GO:0031261; DNA replication preinitiation complex
GO:0031390; nuclear replication fork" ; primary_name "mcm5" ; product "MCM complex subunit Mcm5" ;
chromosome1 GeneDB mRNA 1458445 1465259 . - . mRNA SPAC9.03c ; systematic_id "SPAC9.03c" ; colour "2" ; db_xref "SPD:34/34C06" ; Alias "brr2" ; synonym "spp41" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YER172C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0004004; ATP-dependent RNA helicase activity
GO:0005682; snRNP U5
GO:0000393; spliceosomal conformational changes to generate catalytic conformation
GO:0005681; spliceosome complex" ; primary_name "brr2" ; product "U5 snRNP complex subunit Brr2 (predicted)" ;
chromosome1 GeneDB mRNA 2245786 2247081 . + . mRNA SPAC13D6.01 ; systematic_id "SPAC13D6.01" ; colour "2" ; gene "pof14 ||| SPAC13D6.01" ; Alias "pof14" ; db_xref "SPD:22/22E04" ; GO "GO:0019005; SCF ubiquitin ligase complex
GO:0005789; endoplasmic reticulum membrane
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032443; regulation of ergosterol biosynthesis
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, no obvious phenotype; cv=phenotype; db_xref=PMID:17016471; date=20061115 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17016471; date=20061115 ||| term=F-box protein; residue=C172- C214; db_xref=PMID:17016471; date=20061115 ||| term=misc, degraded by an autocatalytic mechanism; db_xref=PMID:17016471; date=20061115 ||| term=gene expression, expression induced by hydrogen peroxide; db_xref=PMID:17016471; cv=gene_ex; date=20061115 ||| term=gene expression, transcriptionally regulated by Sty1; db_xref=PMID:17016471; cv=gene_ex; date=20061115 ||| term=gene expression, transcriptionally regulated by Pap1; db_xref=PMID:17016471; cv=gene_ex; date=20061115 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "pof14" ; product "F-box protein Pof14" ;
chromosome1 GeneDB mRNA 2475946 2477159 . - . mRNA SPAC19A8.06 ; db_xref "SPD:19/19A06" ; systematic_id "SPAC19A8.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL181W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0016726; oxidoreductase activity, acting on CH2 groups, NAD or NADP as acceptor
GO:0005783; endoplasmic reticulum
GO:0031965; nuclear membrane" ; gene "SPAC19A8.06" ; product "short chain dehydrogenase (predicted)" ;
chromosome1 GeneDB mRNA 4222624 4223239 . - . mRNA SPAC1F7.14c ; Alias "tam6" ; systematic_id "SPAC1F7.14c" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=conserved in Fungi; date=20090716 ||| term=conserved in Eukaryotes; date=20090716 ||| term=conserved in Fungi only; date=20090716 ||| term=orthologous to S. cerevisiae YDL157C; date=20090716 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; colour "10" ; primary_name "tam6" ; gene "SPAC1F7.14c" ; product "mitochondrial conserved protein" ;
chromosome1 GeneDB mRNA 1163057 1163522 . + . mRNA SPAC22A12.05 ; systematic_id "SPAC22A12.05" ; colour "2" ; gene "rpc11 ||| SPAC22A12.05" ; Alias "rpc11" ; db_xref "SPD:01/01H01" ; GO "GO:0005666; DNA-directed RNA polymerase III complex
GO:0003677; DNA binding
GO:0003899; DNA-directed RNA polymerase activity
GO:0042779; removal of tRNA 3'-trailer sequence
GO:0042779; removal of tRNA 3'-trailer sequence
GO:0006384; transcription initiation from RNA polymerase III promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR045C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpc11" ; product "DNA-directed RNA polymerase III complex subunit Rpc11" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB mRNA 4475857 4476849 . - . mRNA SPAC17C9.14 ; db_xref "SPD:11/11A05" ; systematic_id "SPAC17C9.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, farnesylated; cv=pt_mod; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YDL065C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0007031; peroxisome organization and biogenesis
GO:0006625; protein targeting to peroxisome
GO:0005829; cytosol" ; gene "SPAC17C9.14" ; product "Pex19 protein (predicted)" ;
chromosome1 GeneDB mRNA 4702291 4704657 . + . mRNA SPAC1834.05 ; systematic_id "SPAC1834.05" ; colour "7" ; gene "alg9 ||| SPAC1834.05" ; Alias "alg9" ; db_xref "SPD:35/35G06" ; GO "GO:0006487; protein amino acid N-linked glycosylation
GO:0000030; mannosyltransferase activity
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL219C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, glycosylation disorders; date=20090428" ; primary_name "alg9" ; product "mannosyltransferase complex subunit Alg9 (predicted)" ;
chromosome1 GeneDB mRNA 4693771 4698559 . + . mRNA SPAC1834.02 ; systematic_id "SPAC1834.02" ; colour "7" ; gene "aro1 ||| SPAC1834.02" ; Alias "aro1" ; db_xref "SPD:31/31A02" ; GO "GO:0009073; aromatic amino acid family biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR127W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "aro1" ; product "pentafunctional aromatic polypeptide Aro1 (predicted)" ; EC_number "4.2.3.4 ||| 2.5.1.19 ||| 2.7.1.71 ||| 4.2.1.10 ||| 1.1.1.25" ;
chromosome1 GeneDB mRNA 5259148 5261759 . - . mRNA SPAC14C4.15c ; systematic_id "SPAC14C4.15c" ; colour "7" ; gene "SPAC14C4.15c ||| SPAPJ760.01c" ; db_xref "SPD:38/38F03" ; synonym "SPAPJ760.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR028C and YOR219C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0008239; dipeptidyl-peptidase activity
GO:0016021; integral to membrane" ; product "dipeptidyl peptidase (predicted)" ;
chromosome1 GeneDB mRNA 959927 962227 . + . mRNA SPAC222.09 ; systematic_id "SPAC222.09" ; colour "2" ; gene "seb1 ||| SPAC222.09" ; db_xref "SPD:27/27F08" ; Alias "seb1" ; GO "GO:0005634; nucleus
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0031123; RNA 3'-end processing
GO:0030847; transcription termination from Pol II promoter, RNA polymerase(A)-independent
GO:0035649; Nrd1 complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL251C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, SEven Binding; date=20100126" ; primary_name "seb1" ; product "RNA-binding protein Seb1" ;
chromosome1 GeneDB mRNA 1316053 1316643 . + . mRNA SPAC6F12.04 ; db_xref "SPD:03/03A06" ; systematic_id "SPAC6F12.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR100W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "; COPI-coated vesicle
GO:0016192; vesicle-mediated transport" ; gene "SPAC6F12.04" ; product "COPI-coated vesicle associated protein (predicted)" ;
chromosome1 GeneDB mRNA 3505109 3505657 . + . mRNA SPAC16E8.03 ; systematic_id "SPAC16E8.03" ; colour "7" ; gene "gna1 ||| SPAC16E8.03 ||| spgna1" ; Alias "gna1" ; db_xref "SPD:03/03G01" ; synonym "spgna1" ; GO "GO:0006048; UDP-N-acetylglucosamine biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gna1" ; product "glucosamine-phosphate N-acetyltransferase (predicted)" ; EC_number "2.3.1.4" ;
chromosome1 GeneDB mRNA 5129371 5131792 . - . mRNA SPAC29A4.10 ; systematic_id "SPAC29A4.10" ; colour "2" ; gene "rrn5 ||| SPAC29A4.10" ; Alias "rrn5" ; db_xref "SPD:35/35A02" ; GO "GO:0003701; RNA polymerase I transcription factor activity
GO:0000182; rDNA binding
GO:0006360; transcription from RNA polymerase I promoter
GO:0005730; nucleolus
GO:0000500; RNA polymerase I upstream activating factor complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YLR141W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "rrn5" ; product "RNA polymerase I upstream activation factor complex subunit Rrn5" ;
chromosome1 GeneDB mRNA 1002838 1003544 . - . mRNA SPAC821.10c ; systematic_id "SPAC821.10c" ; colour "2" ; gene "sod1 ||| SPAC821.10c" ; Alias "sod1" ; db_xref "SPD:04/04C02" ; GO "GO:0005829; cytosol
GO:0005758; mitochondrial intermembrane space
GO:0004784; superoxide dismutase activity
GO:0006878; copper ion homeostasis
GO:0034599; cellular response to oxidative stress
GO:0006882; zinc ion homeostasis
GO:0001320; age-dependent response to reactive oxygen species during chromological cell aging
GO:0071451; cellular response to superoxide
GO:0019430; removal of superoxide radicals
GO:0045454; cell redox homeostasis
GO:0004784; superoxide dismutase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12073089; date=19700101 ||| term=phenotype, growth auxotrophic for cysteine; cv=phenotype; db_xref=PMID:12073089; date=20100121 ||| term=phenotype, growth auxotrophic for methionine; cv=phenotype; db_xref=PMID:12073089; date=20100121 ||| term=phenotype, growth auxotrophic for lysine; cv=phenotype; db_xref=PMID:12073089; date=20100121 ||| term=phenotype, sensitive to menadione; cv=phenotype; db_xref=PMID:12073089; date=20100121 ||| term=phenotype, sensitive to H202; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=phenotype, aerobic growth defects; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=phenotype, accumulation of carbonylated proteins; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=disease associated, amyotrophic lateral sclerosis; date=20060920 ||| term=gene expression, transcriptionally regulated by Pap1; db_xref=PMID:12073089; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YJR104C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=disease associated, neurological disorders; date=20091123 ||| term=disease associated, motor neurone disease; date=20091123" ; primary_name "sod1" ; product "superoxide dismutase Sod1" ; EC_number "1.15.1.1" ;
chromosome1 GeneDB mRNA 2400870 2401572 . - . mRNA SPAC15F9.03c ; systematic_id "SPAC15F9.03c" ; colour "2" ; gene "nxt2 ||| SPAC15F9.03c ||| SPAC1B9.01c" ; Alias "nxt2" ; db_xref "SPD:51/51B07" ; synonym "ntf2 ||| nft2 ||| SPAC1B9.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0031965; nuclear membrane
GO:0008536; Ran GTPase binding
GO:0006606; protein import into nucleus" ; primary_name "nxt2" ; product "nuclear transport factor Nxt2" ;
chromosome1 GeneDB mRNA 4576228 4577002 . - . mRNA SPAC12B10.02c ; db_xref "SPD:08/08D04" ; systematic_id "SPAC12B10.02c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL117W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005783; endoplasmic reticulum
GO:0006887; exocytosis
GO:0006817; phosphate transport" ; colour "7" ; gene "SPAC12B10.02c" ; product "endoplasmic reticulum resident protein required for packaging into COPII vesicles (predicted)" ;
chromosome1 GeneDB mRNA 4049553 4050433 . + . mRNA SPAC19G12.04 ; db_xref "SPD:06/06B09" ; systematic_id "SPAC19G12.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR032C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000256; allantoin catabolism
GO:0004848; ureidoglycolate hydrolase activity
GO:0006145; purine base catabolism" ; gene "SPAC19G12.04" ; product "ureidoglycolate hydrolase (predicted)" ; EC_number "3.5.3.19" ;
chromosome1 GeneDB mRNA 649449 649889 . - . mRNA SPAC1D4.07c ; db_xref "SPD:03/03G07" ; systematic_id "SPAC1D4.07c" ; colour "6" ; gene "SPAC1D4.07c" ; product "dubious" ;
chromosome1 GeneDB mRNA 2104148 2105410 . - . mRNA SPAC631.01c ; systematic_id "SPAC631.01c" ; colour "2" ; gene "acp2 ||| SPAC631.01c" ; Alias "acp2" ; db_xref "SPD:32/32D06" ; GO "GO:0008290; F-actin capping protein complex
GO:0051016; barbed-end actin filament capping
GO:0051015; actin filament binding
GO:0000916; cytokinesis, contractile ring contraction
GO:0034613; cellular protein localization
GO:0030479; actin cortical patch
GO:0005884; actin filament
GO:0051286; cell tip
GO:0033205; cell cycle cytokinesis
GO:0000916; cytokinesis, contractile ring contraction
GO:0030835; negative regulation of actin filament depolymerization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "acp2" ; product "F-actin capping protein beta subunit (predicted)" ;
chromosome1 GeneDB mRNA 5253235 5255892 . + . mRNA SPAC14C4.13 ; systematic_id "SPAC14C4.13" ; colour "2" ; gene "rad17 ||| SPAC14C4.13" ; Alias "rad17" ; db_xref "SPD:26/26G07" ; GO "GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0005524; ATP binding
GO:0003689; DNA clamp loader activity
GO:0031573; intra-S DNA damage checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007095; mitotic cell cycle G2/M tansition DNA damage checkpoint" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER173W; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rad17" ; product "RFC related checkpoint protein Rad17" ;
chromosome1 GeneDB mRNA 689380 691030 . + . mRNA SPAC22F3.08c ; systematic_id "SPAC22F3.08c" ; colour "7" ; gene "rok1 ||| SPAC22F3.08c" ; Alias "rok1" ; db_xref "SPD:23/23C07" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005730; nucleolus
GO:0006364; 35S primary transcript processing
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YGL171W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SLC45A3 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "rok1" ; product "ATP-dependent RNA helicase Rok1 (predicted)" ;
chromosome1 GeneDB mRNA 1983035 1984542 . + . mRNA SPAC9G1.07 ; db_xref "SPD:20/20A09" ; systematic_id "SPAC9G1.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC9G1.07" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3117363 3119170 . - . mRNA SPAC688.06c ; systematic_id "SPAC688.06c" ; colour "2" ; gene "slx4 ||| SPAC688.06c" ; Alias "slx4" ; db_xref "SPD:20/20G07" ; GO "GO:0033557; Slx1-Slx4 complex
GO:0030874; nucleolar chromatin
GO:0004519; endonuclease activity
GO:0005515; protein binding
GO:0031297; collapsed replication fork processing
GO:0043007; maintenance of rDNA
GO:0034065; replication fork processing at rDNA locus
GO:0006261; DNA-dependent DNA replication" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14528010; date=19700101 ||| term=orthologous to S. cerevisiae YLR135W; date=19700101 ||| term=SAP domain; qualifier=inferred from context; date=19700101 ||| term=localization rDNA protrusions; db_xref=PMID:14528010; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "slx4" ; product "structure-specific endonuclease subunit" ;
chromosome1 GeneDB mRNA 142675 144432 . + . mRNA SPAC11D3.17 ; db_xref "SPD:36/36B03" ; systematic_id "SPAC11D3.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC11D3.17" ; product "zf-C2H2 type zinc finger protein" ;
chromosome1 GeneDB mRNA 2574726 2575938 . - . mRNA SPAC4A8.13c ; systematic_id "SPAC4A8.13c" ; colour "2" ; gene "pts1 ||| SPAC4A8.13c" ; Alias "pts1" ; db_xref "SPD:41/41F07" ; GO "GO:0005634; nucleus
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0000278; mitotic cell cycle
GO:0043161; proteasomal ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR103W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pts1" ; product "20S proteasome component beta 5" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB mRNA 2315567 2318315 . - . mRNA SPAC13G7.12c ; db_xref "SPD:21/21C01" ; systematic_id "SPAC13G7.12c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR133W and YDR147W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006656; phosphatidylcholine biosynthesis
GO:0004103; choline kinase activity
GO:0005829; cytosol" ; gene "SPAC13G7.12c" ; product "choline kinase (predicted)" ; EC_number "2.7.1.32" ;
chromosome1 GeneDB mRNA 1653288 1653783 . - . mRNA SPAC343.08c ; systematic_id "SPAC343.08c" ; colour "7" ; gene "SPAC343.08c ||| mrp17" ; Alias "mrp17" ; db_xref "SPD:04/04G08" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrp17" ; product "mitochondrial ribosomal protein subunit Mrp17 (predicted)" ;
chromosome1 GeneDB mRNA 5062104 5063049 . - . mRNA SPAC2E12.03c ; db_xref "SPD:11/11B11" ; systematic_id "SPAC2E12.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PQ loop; date=19700101 ||| term=orthologous to S. cerevisiae YBR147W and YDR090C and YDR352W and YOL092W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC2E12.03c" ; product "PQ loop protein" ;
chromosome1 GeneDB mRNA 3723794 3725714 . + . mRNA SPAC15E1.04 ; systematic_id "SPAC15E1.04" ; colour "7" ; gene "SPAC15E1.04" ; note "SPAC15E1.04 is similar to YOR074 at the C-term, but has an N-terminal flavoprotein domain" ; db_xref "SPD:26/26D03" ; GO "GO:0004799; thymidylate synthase activity
GO:0006231; dTMP biosynthesis
GO:0050660; FAD binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR074C (C-term); date=19700101 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20071003 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "thymidylate synthase (predicted)" ; EC_number "2.1.1.45" ;
chromosome1 GeneDB mRNA 4924227 4925757 . + . mRNA SPAPB8E5.09 ; Alias "rvb1" ; systematic_id "SPAPB8E5.09" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDR190C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230" ; GO "GO:0031011; Ino80 complex
GO:0000812; Swr1 complex
GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange" ; gene "SPAPB8E5.09 ||| rvb1" ; primary_name "rvb1" ; product "AAA family ATPase Rvb1" ;
chromosome1 GeneDB mRNA 1863972 1864457 . + . mRNA SPAPB1A10.16 ; systematic_id "SPAPB1A10.16" ; controlled_curation "term=orthologous to S. cerevisiae YGL041W-A; date=20071203 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; cv=warning; date=20100317 ||| term=warning, new gene; cv=warning; date=20100317 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; colour "10" ; gene "SPAPB1A10.16" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 703789 706828 . + . mRNA SPAC22F3.03c ; systematic_id "SPAC22F3.03c" ; colour "2" ; gene "rdh54 ||| tid1 ||| SPAC22F3.03c ||| mug34" ; note "double mutant with rhp54 does not sporulate (PMID 14551247) ||| double mutant with rhp54 does not arrest meiotic progression (PMID 14551247)" ; Alias "rdh54" ; db_xref "SPD:47/47G07" ; synonym "tid1 ||| mug34" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; db_xref=PMID:14551247; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14551247; date=19700101 ||| term=orthologous to S. cerevisiae YBR073W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:14551247; date=20090905" ; GO "GO:0000724; double-strand break repair via homologous recombination
GO:0007131; meiotic recombination
GO:0004003; ATP-dependent DNA helicase activity
GO:0005634; nucleus" ; primary_name "rdh54" ; product "ATP-dependent DNA helicase Rdh54" ;
chromosome1 GeneDB mRNA 3222461 3226263 . - . mRNA SPAC6G10.05c ; systematic_id "SPAC6G10.05c" ; colour "7" ; gene "SPAC6G10.05c" ; Alias "trs120" ; db_xref "SPD:39/39C05" ; GO "GO:0030008; TRAPP complex
GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR407C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "trs120" ; product "TRAPP complex subunit Trs120 (predicted)" ;
chromosome1 GeneDB mRNA 1419073 1420467 . - . mRNA SPAC20G8.10c ; systematic_id "SPAC20G8.10c" ; colour "2" ; db_xref "SPD:21/21E11" ; Alias "atg6" ; synonym "SPAC3A12.01c" ; GO "GO:0032258; CVT pathway
GO:0030433; ER-associated protein catabolism
GO:0045324; late endosome to vacuole transport
GO:0034271; phosphatidylinositol 3-kinase complex I
GO:0006661; phosphatidylinositol biosynthetic process
GO:0042147; retrograde transport, endosome to Golgi
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL120W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atg6" ; product "beclin family protein, involved in autophagy" ;
chromosome1 GeneDB mRNA 2797970 2800390 . - . mRNA SPAC1805.15c ; systematic_id "SPAC1805.15c" ; colour "2" ; gene "pub2 ||| SPAC1805.15c" ; Alias "pub2" ; db_xref "SPD:50/50A09" ; GO "GO:0051285; cell cortex of cell tip
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004842; ubiquitin protein ligase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; db_xref=PMID:11956316; date=20060530 ||| term=WW domain; date=19700101 ||| term=C2 domain; date=19700101 ||| term=gene expression, constitutive; cv=gene_ex; db_xref=PMID:11956316; date=19700101 ||| term=orthologous to S. cerevisiae YER125W; date=19700101 ||| term=modification, ubiquitinated; residue=Cys639; db_xref=PMID:11956316; evidence=IDA; cv=pt_mod; date=20081001 ||| term=gene expression, expressed in response to nitrogen starvation; db_xref=PMID:11956316; cv=gene_ex; evidence=IEP; date=20081001 ||| term=Nedd4/Rsp5 family; db_xref=PMID:11956316; date=20081001 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=complementation, functionally complemented by S. cerevisiae YER125W; db_xref=PMID:11956316; date=20100923 ||| term=disease associated, liddle syndrome; date=20101102 ||| term=human NEDD4 and NEDD4L ortholog; date=20101102" ; primary_name "pub2" ; product "HECT-type ubiquitin-protein ligase Pub2" ;
chromosome1 GeneDB mRNA 3380591 3381859 . + . mRNA SPAC8E11.04c ; db_xref "SPD:15/15D06" ; systematic_id "SPAC8E11.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "7" ; GO "GO:0004620; phospholipase activity
GO:0044242; cellular lipid catabolic process" ; gene "SPAC8E11.04c" ; product "phospholipase (predicted)" ; note "orthologous to S. cerevisiae YLR118C; reciprocal best hit but possibly not ortholog due to probable lineage specific gene losses (is more divergent than higher eukaryotic orthologs)" ;
chromosome1 GeneDB mRNA 4582378 4584375 . + . mRNA SPAC12B10.05 ; systematic_id "SPAC12B10.05" ; colour "7" ; note "in S. cerevisiae removes 3 amino acids from the N- terminus of Nfs1 after cleavage by MPP" ; db_xref "SPD:37/37B03" ; Alias "icp55" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Nfs1; qualifier=predicted; date=20090903" ; GO "GO:0005739; mitochondrion
GO:0070006; metalloaminopeptidase activity
GO:0034982; mitochondrial protein processing
GO:0051605; protein maturation by peptide bond cleavage
GO:0007005; mitochondrion organization" ; primary_name "icp55" ; product "mitochondrial intermediate cleavage peptidase Icp55 (predicted)" ;
chromosome1 GeneDB mRNA 4250631 4251463 . - . mRNA SPAC1F7.13c ; systematic_id "SPAC1F7.13c" ; colour "7" ; gene "rpl801 ||| rpl8-1 ||| rpl18 ||| rpk5a ||| rpl2-1 ||| SPAC1F7.13c ||| SPAC21E11.02c" ; Alias "rpl801" ; db_xref "SPD:40/40A11" ; synonym "rpl8-1 ||| rpl18 ||| rpk5a ||| rpl2-1 ||| SPAC21E11.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR031C-A and YIL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0019843; rRNA binding" ; primary_name "rpl801" ; product "60S ribosomal protein L8 (predicted)" ;
chromosome1 GeneDB mRNA 311918 313787 . + . mRNA SPAC18B11.03c ; db_xref "SPD:23/23A07" ; systematic_id "SPAC18B11.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR212W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "; nuclear periphery
GO:0008080; N-acetyltransferase activity" ; gene "SPAC18B11.03c" ; product "N-acetyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 2691877 2693745 . - . mRNA SPAC644.11c ; systematic_id "SPAC644.11c" ; colour "7" ; gene "SPAC644.11c" ; Alias "pkp1" ; db_xref "KEGG:MAP00620; ||| SPD:24/24C08" ; GO "GO:0005739; mitochondrion
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0004740; [pyruvate dehydrogenase (lipoamide)] kinase activity
GO:0006086; acetyl-CoA biosynthesis from pyruvate" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL042C and YGL059W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "pkp1" ; product "mitochondrial pyruvate dehydrogenase (lipoamide) kinase Pkp1 (predicted)" ; EC_number "2.7.11.2" ;
chromosome1 GeneDB mRNA 929841 932095 . + . mRNA SPAC1687.15 ; systematic_id "SPAC1687.15" ; colour "2" ; gene "gsk3 ||| skp1 ||| SPAC1687.15" ; Alias "gsk3" ; db_xref "SPD:40/40F09" ; synonym "skp1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=glycogen synthase kinase 3 (GSK- 3) subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8524294; date=19700101 ||| term=orthologous to S. cerevisiae YMR139W and YDL079C and YNL307C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sensitive to high temperature; qualifier=deletion; cv=phenotype; db_xref=PMID:8524294; date=20090113 ||| term=phenotype, sporulation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:8524294; date=20090113 ||| term=modification, phosphorylated; residue=S335; cv=pt_mod; db_xref=PMID:8524294; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0071775; regulation of cell cycle cytokinesis
GO:0051983; regulation of chromosome segregation
GO:0006468; protein amino acid phosphorylation
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "gsk3" ; product "serine/threonine protein kinase Gsk3" ;
chromosome1 GeneDB mRNA 4588250 4589707 . + . mRNA SPAC12B10.09 ; db_xref "SPD:50/50E12" ; systematic_id "SPAC12B10.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YNL003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000095; S-adenosylmethionine transporter activity
GO:0015805; S-adenosylmethionine transport
GO:0005743; mitochondrial inner membrane" ; gene "SPAC12B10.09" ; product "S-adenosylmethionine transporter (predicted)" ;
chromosome1 GeneDB mRNA 319836 321503 . + . mRNA SPAC12G12.14c ; systematic_id "SPAC12G12.14c" ; colour "2" ; gene "pfs2 ||| SPAC12G12.14c" ; Alias "pfs2" ; db_xref "SPD:24/24G11" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0006378; mRNA polyadenylation
GO:0006379; mRNA cleavage
GO:0005634; nucleus
GO:0005730; nucleolus
GO:0000070; mitotic sister chromatid segregation
GO:0031124; mRNA 3'-end processing
GO:2000045; regulation of G1/S transition of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15743824; date=19700101 ||| term=phenotype, spindle checkpoint, required; db_xref=PMID:15743824; cv=phenotype; date=20060531 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL317W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pfs2" ; product "WD repeat protein Pfs2" ;
chromosome1 GeneDB mRNA 2868261 2869418 . - . mRNA SPAC8F11.09c ; systematic_id "SPAC8F11.09c" ; colour "7" ; gene "nnt1 ||| SPAC8F11.09c" ; Alias "nnt1" ; db_xref "SPD:11/11E04" ; GO "GO:0000183; chromatin silencing at rDNA
GO:0008112; nicotinamide N-methyltransferase activity
GO:0006769; nicotinamide metabolism
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR285W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "nnt1" ; product "nicotinamide N-methyltransferase Nnt1 (predicted)" ;
chromosome1 GeneDB mRNA 1882385 1884256 . - . mRNA SPAPB1A10.11c ; systematic_id "SPAPB1A10.11c" ; colour "7" ; gene "SPAPB1A10.11c" ; Alias "mse1" ; db_xref "KEGG:MAP00251; ||| KEGG:MAP00860; ||| KEGG:MAP00970;" ; GO "GO:0006424; glutamyl-tRNA aminoacylation
GO:0004818; glutamate-tRNA ligase activity
GO:0005739; mitochondrion
GO:0006412; protein biosynthesis
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mse1" ; product "mitochondrial glutamyl-tRNA synthetase Mse1 (predicted)" ; reserved_name "mse1" ; EC_number "6.1.1.17" ;
chromosome1 GeneDB mRNA 3683690 3685345 . - . mRNA SPAC15A10.04c ; systematic_id "SPAC15A10.04c" ; colour "7" ; gene "zpr1 ||| SPAC15A10.04c" ; Alias "zpr1" ; db_xref "SPD:21/21D05" ; GO "GO:0007346; regulation of mitotic cell cycle
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0031669; cellular response to nutrient levels
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR211W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "zpr1" ; product "EF-1 alpha binding zinc finger protein Zpr1 (predicted)" ;
chromosome1 GeneDB mRNA 1271889 1272962 . + . mRNA SPAPB17E12.03 ; systematic_id "SPAPB17E12.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YMR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005778; peroxisomal membrane
GO:0007031; peroxisome organization and biogenesis
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAPB17E12.03" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB mRNA 118195 120108 . - . mRNA SPAC11D3.07c ; db_xref "SPD:26/26F11" ; systematic_id "SPAC11D3.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; date=20080502" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC11D3.07c" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB mRNA 4656535 4658322 . - . mRNA SPAC144.04c ; systematic_id "SPAC144.04c" ; colour "7" ; gene "spe1 ||| SPAC144.04c" ; Alias "spe1" ; db_xref "SPD:44/44B11" ; GO "GO:0004586; ornithine decarboxylase activity
GO:0005737; cytoplasm
GO:0015940; pantothenate biosynthesis
GO:0009446; putrescine biosynthesis
GO:0019467; ornithine catabolism, by decarboxylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL184W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spe1" ; product "ornithine decarboxylase Spe1 (predicted)" ; EC_number "4.1.1.17" ;
chromosome1 GeneDB mRNA 3853592 3854906 . - . mRNA SPAC4H3.14c ; db_xref "SPD:43/43G06" ; systematic_id "SPAC4H3.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC4H3.14c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4453280 4455618 . - . mRNA SPAC9E9.09c ; db_xref "SPD:24/24E04" ; systematic_id "SPAC9E9.09c" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0006068; ethanol catabolism
GO:0006740; NADPH regeneration
GO:0004029; aldehyde dehydrogense (NAD) activity
GO:0004030; aldehyde dehydrogense [NAD(P)+] activity
GO:0006090; pyruvate metabolic process
GO:0019413; acetate biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR374W and YER073W and YPL061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC9E9.09c" ; product "aldehyde dehydrogenase (predicted)" ; EC_number "1.2.1.3" ;
chromosome1 GeneDB mRNA 885787 887216 . - . mRNA SPAC23G3.10c ; systematic_id "SPAC23G3.10c" ; colour "2" ; gene "ssr3 ||| SPAC23G3.10c" ; Alias "ssr3" ; db_xref "SPD:32/32G05" ; GO "GO:0000790; nuclear chromatin
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0016514; SWI/SNF complex
GO:0016586; RSC complex
GO:0010551; regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Swi/Snf RSC; cv=name_description; date=20061009 ||| term=orthologous to S. cerevisiae YNR023W and YCR052W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ssr3" ; product "SWI/SNF and RSC complex subunit Ssr3" ;
chromosome1 GeneDB mRNA 2187251 2189342 . + . mRNA SPAC1783.01 ; db_xref "SPD:45/45G07" ; systematic_id "SPAC1783.01" ; colour "7" ; GO "GO:0050660; FAD binding
GO:0030586; [mehtionine synthase] reductase activity
GO:0009086; methionine biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC12C2.03c; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human MTRR ortholog; date=20100625" ; gene "SPAC1783.01" ; product "methionine synthase reductase (predicted)" ; EC_number "1.16.1.18" ;
chromosome1 GeneDB mRNA 534226 537856 . - . mRNA SPAC2F7.03c ; systematic_id "SPAC2F7.03c" ; colour "2" ; db_xref "SPD:30/30C08" ; Alias "pom1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9573052; date=19700101 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19474789; date=20090826 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19474792; date=20090826 ||| term=DYRK subfamily; date=19700101 ||| term=gene expression, expression cell cycle regulated; db_xref=PMID:11230130; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=localization, polar gradient; db_xref=PMID:19474789|PMID:19474792; date=20090826 ||| term=localization, inhibits Cdr2 localization at non-growing cell end; db_xref=PMID:19474792; date=20090826 ||| term=localization target Cdr2; db_xref=PMID:19474789; date=20090826 ||| term=localization target Cdr2; db_xref=PMID:19474792; date=20090826 ||| term=target is Cdr2; evidence=IDA; qualifier=phosphorylates|inhibits; db_xref=PMID:19474792; date=20090826 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0051285; cell cortex of cell tip
GO:0032153; cell division site
GO:0030427; site of polarized growth
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0070650; actin filament bundle distribution
GO:0000753; cellular morphogenesis during conjugation with cellular fusion
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0071343; negative regulation of establishment of contractile ring localization involved in cytokinesis during the cell cycle
GO:0006468; protein amino acid phosphorylation
GO:0071574; protein localization to medial cortex
GO:0008361; regulation of cell size
GO:0071775; regulation of cell cycle cytokinesis
GO:0032878; regulation of establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0007165; signal transduction" ; primary_name "pom1" ; product "DYRK family protein kinase Pom1" ; EC_number "2.7.12.1" ;
chromosome1 GeneDB mRNA 352427 353055 . - . mRNA SPAC630.04c ; db_xref "SPD:04/04H01" ; systematic_id "SPAC630.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; date=20100606" ; colour "8" ; gene "SPAC630.04c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1875896 1877822 . + . mRNA SPAPB1A10.08 ; systematic_id "SPAPB1A10.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; gene "SPAPB1A10.08" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4383186 4384239 . + . mRNA SPAC1527.02 ; systematic_id "SPAC1527.02" ; colour "7" ; gene "sft2 ||| SPAC1527.02" ; Alias "sft2" ; db_xref "SPD:10/10D12" ; GO "GO:0006886; intracellular protein transport
GO:0006895; Golgi to endosome transport
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL102W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sft2" ; product "Golgi transport protein Sft2 (predicted)" ;
chromosome1 GeneDB mRNA 1813855 1815727 . - . mRNA SPAC1002.10c ; systematic_id "SPAC1002.10c" ; colour "2" ; gene "sgt1 ||| SPAC1002.10c" ; Alias "sgt1" ; db_xref "SPD:36/36C02" ; GO "GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0030528; transcription regulator activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16408318; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sgt1" ; product "SGT1 family transcriptional regulator Sgt1" ;
chromosome1 GeneDB mRNA 2980473 2981589 . + . mRNA SPAPB1A11.02 ; systematic_id "SPAPB1A11.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPAPB1A11.02" ; product "esterase/lipase (predicted)" ;
chromosome1 GeneDB mRNA 3089583 3090735 . - . mRNA SPAC16A10.06c ; systematic_id "SPAC16A10.06c" ; colour "2" ; gene "nse2 ||| SPAC16A10.06c" ; Alias "nse2" ; obsolete_name "pli2" ; db_xref "SPD:43/43G10" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0005634; nucleus
GO:0019789; SUMO ligase activity
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0016925; protein sumoylation
GO:0048478; replication fork protection" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:15601841; date=20060504 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12966087; date=20060504 ||| term=modification, sumoylated; cv=pt_mod; db_xref=PMID:15601841; date=20060504 ||| term=zinc finger protein; date=20060504 ||| term=zf-MIZ; qualifier=inferred from context; date=20060504 ||| term=orthologous to S. cerevisiae YEL019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nse2" ; product "Smc5-6 complex non-SMC subunit 2" ;
chromosome1 GeneDB mRNA 5482969 5484784 . - . mRNA SPAC922.05c ; db_xref "SPD:24/24E10" ; systematic_id "SPAC922.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022857; transmembrane transporter activity" ; colour "7" ; gene "SPAC922.05c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 2911657 2912426 . + . mRNA SPAC513.02 ; db_xref "SPD:07/07E04" ; systematic_id "SPAC513.02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC5H10.03; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; colour "10" ; gene "SPAC513.02" ; product "phosphoglycerate mutase family" ;
chromosome1 GeneDB mRNA 1675730 1678118 . + . mRNA SPAC343.16 ; systematic_id "SPAC343.16" ; colour "2" ; gene "lys2 ||| SPAC343.16" ; Alias "lys2" ; db_xref "SPD:37/37G03" ; GO "GO:0005739; mitochondrion
GO:0004409; homoaconitate hydratase activity
GO:0019878; lysine biosynthesis via aminoadipic acid" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR234W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lys2" ; product "homoaconitate hydratase Lys2" ; EC_number "4.2.1.36" ;
chromosome1 GeneDB mRNA 5311529 5314362 . + . mRNA SPAC11E3.14 ; db_xref "SPD:52/52B06" ; systematic_id "SPAC11E3.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL082W and YKR018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC11E3.14" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB mRNA 4205733 4206634 . + . mRNA SPAC694.03 ; db_xref "SPD:10/10E02" ; systematic_id "SPAC694.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL047C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC694.03" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 4789414 4791178 . + . mRNA SPAC22F8.04 ; db_xref "SPD:18/18B11" ; systematic_id "SPAC22F8.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0035436; triose phosphate transmembrane transport
GO:0071917; triose-phosphate transmembrane transporter activity" ; colour "7" ; gene "SPAC22F8.04" ; product "triose phosphate transporter (predicted)" ;
chromosome1 GeneDB mRNA 3209901 3211407 . + . mRNA SPAC1486.09 ; db_xref "SPD:44/44D04" ; systematic_id "SPAC1486.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PINc domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR056C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005634; nucleus
GO:0042274; ribosomal small subunit biogenesis
GO:0043248; proteasome assembly
GO:0030684; preribosome
GO:0003723; RNA binding
GO:0004540; ribonuclease activity" ; gene "SPAC1486.09" ; product "ribosome biogenesis protein Nob1 (predicted)" ;
chromosome1 GeneDB mRNA 3896266 3897252 . - . mRNA SPAC926.07c ; systematic_id "SPAC926.07c" ; colour "7" ; gene "SPAC926.07c ||| dlc2" ; Alias "dlc2" ; db_xref "SPD:04/04G10" ; GO "GO:0005868; cytoplasmic dynein complex
GO:0030029; actin filament-based process
GO:0031122; cytoplasmic microtubule organization
GO:0007018; microtubule-based movement
GO:0007017; microtubule-based process
GO:0030437; ascospore formation
GO:0030989; horsetail nuclear movement
GO:0000743; nuclear movement during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR424C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dlc2" ; product "dynein light chain Dlc2 (predicted)" ;
chromosome1 GeneDB mRNA 4052446 4053293 . - . mRNA SPAC19G12.06c ; systematic_id "SPAC19G12.06c" ; colour "2" ; gene "hta2 ||| SPAC19G12.06c" ; Alias "hta2" ; db_xref "SPD:31/31D04" ; GO "GO:0042770; DNA damage response, signal transduction
GO:0006975; DNA damage induced protein phosphorylation
GO:0034501; protein localization to kinetochore
GO:0034501; protein localization to kinetochore" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBL003C and YDR225W; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=in_response_to_DNA_damage; residue=S129; annotation_extension=dependent_on(GeneDB_Spombe:SPBC216. 05)|dependent_on(GeneDB_Spombe:SPCC23B6.03c); db_xref=PMID:15226425; date=20080104 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target of Bub1; qualifier=phosphorylated_by; db_xref=PMID:19965387; date=20101116" ; primary_name "hta2" ; product "histone H2A beta" ;
chromosome1 GeneDB mRNA 473837 474826 . - . mRNA SPAC24H6.08 ; db_xref "SPD:07/07F04" ; systematic_id "SPAC24H6.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC24H6.08" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1364837 1367640 . + . mRNA SPAC57A10.02 ; systematic_id "SPAC57A10.02" ; colour "2" ; gene "cdr2 ||| SPAC57A10.02" ; Alias "cdr2" ; db_xref "SPD:28/28D01" ; GO "GO:0031097; medial cortex
GO:0071341; medial cortical node
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0034613; cellular protein localization
GO:0010971; positive regulation of G2/M transition of mitotic cell cycle
GO:0006468; protein amino acid phosphorylation
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0008361; regulation of cell size
GO:0071775; regulation of cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9843577; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9843577; date=20100705 ||| term=orthologous to S. cerevisiae YCL024W and YDR507C and YKL101W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Wee1; qualifier=phosphorylates; db_xref=PMID:9843572; date=20090826 ||| term=localization target Mid1; db_xref=PMID:19474789; date=20090826 ||| term=localization target Cdr1; db_xref=PMID:19474789; date=20090826 ||| term=localization target Wee1; db_xref=PMID:19474789; date=20090826 ||| term=target of Pom1; qualifier=phosphorylated_by; evidence=IDA; db_xref=PMID:19474792; date=20090826 ||| term=localization dependent on Pom1; db_xref=PMID:19474792; date=20090826" ; primary_name "cdr2" ; product "serine/threonine protein kinase Cdr2" ;
chromosome1 GeneDB mRNA 3731102 3731981 . + . mRNA SPAC15E1.09 ; systematic_id "SPAC15E1.09" ; colour "2" ; gene "grx2 ||| SPAC15E1.09" ; Alias "grx2" ; db_xref "SPD:08/08D09" ; GO "GO:0005739; mitochondrion
GO:0004602; glutathione peroxidase activity
GO:0004364; glutathione transferase activity
GO:0015035; protein disulfide oxidoreductase activity
GO:0045454; cell redox homeostasis
GO:0034599; cellular response to oxidative stress
GO:0019430; removal of superoxide radicals" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR513W and YCL035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=thioredoxin family; date=20081111" ; primary_name "grx2" ; product "glutaredoxin Grx2" ;
chromosome1 GeneDB mRNA 160977 161822 . - . mRNA SPAC5H10.09c ; db_xref "SPD:10/10B09" ; systematic_id "SPAC5H10.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR176W; date=19700101 ||| term=warning, co-expressed with adjacent gene; qualifier=predicted; date=20100821 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005739; mitochondrion
GO:0003864; 3-methyl-2-oxobutanoate hydroxymethyltransferase activity
GO:0015940; pantothenate biosynthesis" ; gene "SPAC5H10.09c" ; product "3-methyl-2-oxobutanoatehydroxymethyltransferase(predicted)" ; EC_number "2.1.2.11" ;
chromosome1 GeneDB mRNA 528003 528837 . - . mRNA SPAC227.16c ; systematic_id "SPAC227.16c" ; colour "2" ; db_xref "SPD:09/09E07" ; Alias "psf3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL146W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006270; DNA replication initiation
GO:0000811; GINS complex
GO:0006271; DNA strand elongation during DNA replication
GO:0071165; GINS complex assembly
GO:0071163; DNA replication preinitiation complex assembly
GO:0031261; DNA replication preinitiation complex
GO:0005634; nucleus
GO:0006270; DNA replication initiation
GO:0043596; nuclear replication fork" ; primary_name "psf3" ; product "GINS complex subunit Psf3" ;
chromosome1 GeneDB mRNA 4740188 4742814 . + . mRNA SPAC458.05 ; systematic_id "SPAC458.05" ; colour "2" ; gene "pik3 ||| vps34 ||| SPAC458.05" ; Alias "pik3" ; db_xref "SPD:28/28F06" ; synonym "vps34" ; GO "GO:0005942; phosphoinositide 3-kinase complex
GO:0016303; phosphatidylinositol 3-kinase activity
GO:0046488; phosphatidylinositol metabolism
GO:0031321; prospore formation
GO:0034613; cellular protein localization
GO:0030476; spore wall assembly (sensu Fungi)
GO:0007033; vacuole organization and biogenesis
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8719881; date=19700101 ||| term=orthologous to S. cerevisiae YLR240W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100705" ; primary_name "pik3" ; product "phosphatidylinositol 3-kinase Pik3" ; EC_number "2.7.1.137" ;
chromosome1 GeneDB mRNA 970980 973458 . - . mRNA SPAC222.13c ; db_xref "SPD:27/27C06" ; systematic_id "SPAC222.13c" ; colour "7" ; GO "GO:0003873; 6-phosphofructo-2-kinase activity
GO:0006003; fructose 2,6-bisphosphate metabolism
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC222.13c" ; product "6-phosphofructo-2-kinase (predicted)" ; EC_number "2.7.1.105" ;
chromosome1 GeneDB mRNA 1040241 1040846 . + . mRNA SPAC23C4.07 ; systematic_id "SPAC23C4.07" ; colour "2" ; gene "tht2 ||| mug22 ||| SPAC23C4.07" ; Alias "tht2" ; db_xref "SPD:06/06G03" ; synonym "mug22" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0000742; karyogamy during conjugation with cellular fusion" ; primary_name "tht2" ; product "meiotically upregulated gene Mug22" ;
chromosome1 GeneDB mRNA 1614260 1615491 . - . mRNA SPAP27G11.04c ; systematic_id "SPAP27G11.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR316C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0046982; protein heterodimerization activity
GO:0006400; tRNA modification
GO:0008251; tRNA-specific adenosine deaminase activity" ; gene "SPAP27G11.04c" ; product "tRNA specific adenosine deaminase subunit Tad3 (predicted)" ;
chromosome1 GeneDB mRNA 4022492 4026493 . + . mRNA SPAC27E2.08 ; Alias "Tf2-6" ; systematic_id "SPAC27E2.08" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "Tf2-6 ||| SPAC27E2.08" ; primary_name "Tf2-6" ; product "retrotransposable element" ;
chromosome1 GeneDB mRNA 5555716 5556768 . + . mRNA SPAC750.01 ; systematic_id "SPAC750.01" ; pseudo "_no_value" ; colour "13" ; gene "SPAC750.01" ; product "pseudogene" ; note "no initiator Methionine; " ;
chromosome1 GeneDB mRNA 5540350 5541138 . - . mRNA SPAC186.05c ; db_xref "SPD:09/09H08" ; systematic_id "SPAC186.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR187W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC186.05c" ; product "human TMEM165 homolog" ;
chromosome1 GeneDB mRNA 1227416 1228861 . - . mRNA SPAC10F6.11c ; systematic_id "SPAC10F6.11c" ; colour "2" ; gene "SPAC10F6.11c" ; Alias "atg17" ; db_xref "SPD:23/23C08" ; GO "GO:0030295; protein kinase activator activity
GO:0000045; autophagic vacuole formation
GO:0005737; cytoplasm
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032947; protein complex scaffold
GO:0007127; meiosis I
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR423C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "atg17" ; product "autophagy associated protein kinase activator Atg17" ;
chromosome1 GeneDB mRNA 3166419 3167699 . + . mRNA SPAC3G9.09c ; gene_synonym "eIF2alpha" ; systematic_id "SPAC3G9.09c" ; colour "2" ; gene "tif211 ||| SPAC3G9.09c" ; Alias "tif211" ; db_xref "SPD:17/17A04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, protein synthesis after stress, defective; allele=non-phosphorylatable on Ser52; db_xref=PMID:19033384; cv=phenotype; date=20091204 ||| term=orthologous to S. cerevisiae YJR007W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=target of Gcn2; qualifier=during_stress; residue=ser52; db_xref=PMID:19033384; date=20091204 ||| term=target of Hri1; db_xref=PMID:12242291; date=20091204 ||| term=target of Hri2; db_xref=PMID:12242291; date=20091204 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:12242291; date=20090213" ; GO "GO:0005850; eukaryotic translation initiation factor 2 complex
GO:0003743; translation initiation factor activity
GO:0043561; regulation of translational initiation in response to osmotic stress
GO:0031575; G1/S transition checkpoint" ; primary_name "tif211" ; product "translation initiation factor eIF2 alpha subunit" ;
chromosome1 GeneDB mRNA 578445 579658 . + . mRNA SPAC13A11.03 ; systematic_id "SPAC13A11.03" ; colour "2" ; gene "mcp7 ||| mug32 ||| SPAC13A11.03" ; Alias "mcp7" ; db_xref "SPD:08/08F07" ; synonym "mug32" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL183C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=region; date=20070810 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20070810 ||| term=name description, Meiotically Upregulated Gene; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=19700101" ; GO "GO:0007129; synapsis
GO:0006302; double-strand break repair
GO:0000790; nuclear chromatin
GO:0007131; meiotic recombination
GO:0005515; protein binding
GO:0007131; meiotic recombination" ; primary_name "mcp7" ; product "meiosis specific coiled-coil protein Mcp7" ;
chromosome1 GeneDB mRNA 995070 997601 . - . mRNA SPAC821.08c ; systematic_id "SPAC821.08c" ; colour "2" ; gene "slp1 ||| cdc20 ||| SPAC821.08c" ; Alias "slp1" ; db_xref "SPD:23/23F01" ; synonym "cdc20" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=Cdc20/Fizzy subfamily; date=19700101 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YGL116W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; kinetochore
GO:0033597; mitotic checkpoint complex
GO:0010997; anaphase promoting complex binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007092; anaphase-promoting complex activation during mitotic cell cycle
GO:0034613; cellular protein localization
GO:0000070; mitotic sister chromatid segregation
GO:0007094; mitotic spindle checkpoint
GO:0045842; positive regulation of mitotic metaphase/anaphase transition
GO:0031577; spindle checkpoint" ; primary_name "slp1" ; product "sleepy homolog Slp1" ;
chromosome1 GeneDB mRNA 1188325 1189110 . - . mRNA SPAC22A12.17c ; db_xref "SPD:09/09G09" ; systematic_id "SPAC22A12.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=related to S. pombe SPAC8E11.10 and SPCC1739.08C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "10" ; gene "SPAC22A12.17c" ; product "short chain dehydrogenase (predicted)" ;
chromosome1 GeneDB mRNA 2295580 2297965 . - . mRNA SPAC13G7.02c ; systematic_id "SPAC13G7.02c" ; colour "7" ; gene "ssa1 ||| SPAC13G7.02c" ; Alias "ssa1" ; db_xref "SPD:40/40G05" ; GO "GO:0016887; ATPase activity
GO:0006457; protein folding
GO:0042026; protein refolding
GO:0051082; unfolded protein binding
GO:0033554; cellular response to stress
GO:0006412; translation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL005C and YBL075C and YER103W and YLL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "ssa1" ; product "heat shock protein Ssa1 (predicted)" ; reserved_name "ssa1" ;
chromosome1 GeneDB mRNA 2609378 2610917 . - . mRNA SPAC823.16c ; systematic_id "SPAC823.16c" ; colour "2" ; db_xref "SPD:19/19G02" ; Alias "mug179" ; synonym "atg18b" ; GO "GO:0005829; cytosol
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0035091; phosphoinositide binding
GO:0006623; protein targeting to vacuole
GO:0030437; sporulation (sensu Fungi)
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YFR021W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug179" ; product "WD repeat protein involved in autophagy Atg18b" ;
chromosome1 GeneDB mRNA 3593112 3596345 . - . mRNA SPAC17G6.04c ; systematic_id "SPAC17G6.04c" ; colour "2" ; gene "cpp1 ||| SPAC17G6.04c" ; Alias "cpp1" ; db_xref "SPD:18/18B06" ; GO "GO:0004660; protein farnesyltransferase activity
GO:0008270; zinc ion binding
GO:0010958; regulation of amino acid import
GO:0006995; cellular response to nitrogen starvation
GO:0018343; protein farnesylation
GO:0018343; protein farnesylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10617635; date=19700101 ||| term=orthologous to S. cerevisiae YDL090C; date=19700101 ||| term=phenotype, sensitive to canavanine; cv=phenotype; db_xref=PMID:10617635; date=20080602 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Rhb1; db_xref=PMID:16624901; date=20100823" ; primary_name "cpp1" ; product "protein farnesyltransferase beta subunit Cpp1" ; EC_number "2.5.1.58" ;
chromosome1 GeneDB mRNA 4722806 4724645 . + . mRNA SPAC17D4.01 ; systematic_id "SPAC17D4.01" ; colour "7" ; gene "pex7 ||| SPAC1834.12 ||| SPAC17D4.01" ; Alias "pex7" ; db_xref "SPD:32/32H11" ; obsolete_name "SPAP17D4.01" ; synonym "SPAC1834.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR142C; date=19700101 ||| term=disease associated, rhizomelic chondrodysplasia punctata (RCDP); date=19700101 ||| term=disease associated, peroxisomal defects; date=20080601 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005829; cytosol
GO:0005782; peroxisomal matrix
GO:0000268; peroxisome targeting sequence binding
GO:0006625; protein targeting to peroxisome" ; primary_name "pex7" ; product "peroxin-7 (predicted)" ;
chromosome1 GeneDB mRNA 3087038 3088536 . + . mRNA SPAC16A10.04 ; systematic_id "SPAC16A10.04" ; colour "2" ; gene "rho4 ||| SPAC16A10.04" ; db_xref "SPD:16/16F09" ; Alias "rho4" ; GO "GO:0000935; barrier septum
GO:0005938; cell cortex
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0032956; regulation of actin cytoskeleton organization
GO:0032955; regulation of barrier septum formation
GO:0008360; regulation of cell shape
GO:0031505; cell wall organization and biogenesis
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0030994; primary cell septum disassembly
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12653963; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; qualifier=deletion; db_xref=PMID:12653963; date=20100705 ||| term=Rho family; date=19700101 ||| term=orthologous to S. cerevisiae YKR055W; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090501" ; primary_name "rho4" ; product "Rho family GTPase Rho4" ;
chromosome1 GeneDB mRNA 2895219 2897905 . - . mRNA SPACUNK4.08 ; db_xref "SPD:38/38D03" ; systematic_id "SPACUNK4.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YHR028C and YOR219C; date=19700101 ||| term=human DPP4 ortholog; date=20100827 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, conserved in Vertebrates; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0008239; dipeptidyl-peptidase activity
GO:0016485; protein processing" ; gene "SPACUNK4.08" ; product "dipeptidyl peptidase (predicted)" ; EC_number "3.4.14.-" ;
chromosome1 GeneDB mRNA 3918201 3920033 . - . mRNA SPAC323.07c ; db_xref "SPD:34/34H03" ; systematic_id "SPAC323.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR338C and YHR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; gene "SPAC323.07c" ; product "MatE family transporter (predicted)" ;
chromosome1 GeneDB mRNA 2315187 2316282 . + . mRNA SPAC13G7.11 ; db_xref "SPD:13/13C08" ; systematic_id "SPAC13G7.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR185C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0009060; aerobic respiration
GO:0007007; inner mitochondrial membrane organization and biogenesis
GO:0032979; protein insertion into mitochondrial membrane from inner side" ; gene "SPAC13G7.11" ; product "mitochondrial respiratory complex assembly protein (predicted)" ;
chromosome1 GeneDB mRNA 772650 774027 . - . mRNA SPAC4G8.06c ; systematic_id "SPAC4G8.06c" ; colour "7" ; gene "trm12 ||| SPAC4G8.06c" ; Alias "trm12" ; db_xref "SPD:20/20A08" ; GO "GO:0008175; tRNA methyltransferase activity
GO:0030488; tRNA methylation
GO:0031591; wybutosine biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human TRMT12 homolog; date=20110131" ; primary_name "trm12" ; product "tRNA methyltransferase Trm12 (predicted)" ;
chromosome1 GeneDB mRNA 3574995 3575687 . - . mRNA SPAC17A2.10c ; db_xref "SPD:08/08A10" ; systematic_id "SPAC17A2.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC17A2.10c" ; product "sequence orphan" ; note "largish ORF in compositionally biased region, probably not real. has odd translation. this is in region where botton strand is T rich, so lots of LLLFFFFLLFFLSFSFSFS ||| see comment on SPAC17A2.11, this region is the same but inverted orientation" ;
chromosome1 GeneDB mRNA 4121964 4124710 . + . mRNA SPAC26H5.04 ; systematic_id "SPAC26H5.04" ; colour "7" ; gene "SPAC26H5.04" ; note "possible in frame splice at 4123354,4123535, improved homology, but unsupproted" ; db_xref "SPD:38/38C12" ; GO "GO:0045721; negative regulation of gluconeogenesis
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007039; vacuolar protein catabolism
GO:0034657; GID complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=armadillo repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YIL017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "vacuolar import and degradation protein Vid28 (predicted)" ;
chromosome1 GeneDB mRNA 2402080 2404667 . - . mRNA SPAC1B9.02c ; systematic_id "SPAC1B9.02c" ; colour "2" ; gene "sck1 ||| SPAC1B9.02c" ; Alias "sck1" ; db_xref "SPD:51/51E10" ; GO "GO:0019933; cAMP-mediated signaling
GO:0090062; regulation of trehalose metabolic process
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0031137; regulation of conjugation with cellular fusion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YHR205W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7498728; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20090820 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100218 ||| term=human AKT1 and AKT2 ortholog; date=20100218" ; primary_name "sck1" ; product "serine/threonine protein kinase Sck1" ; EC_number "2.7.11.1" ;
chromosome1 GeneDB mRNA 186790 187563 . - . mRNA SPAC13G6.07c ; systematic_id "SPAC13G6.07c" ; colour "2" ; gene "rps601 ||| rps6-1 ||| SPAC13G6.07c" ; Alias "rps601" ; db_xref "SPD:08/08E07" ; synonym "rps6-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL090C and YBR181C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps601" ; product "40S ribosomal protein S6" ;
chromosome1 GeneDB mRNA 5568903 5569803 . - . mRNA SPAC750.06c ; db_xref "SPD:52/52E01" ; systematic_id "SPAC750.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; gene "SPAC750.06c" ; product "S. pombe specific DUF999 protein family 4" ;
chromosome1 GeneDB mRNA 3678025 3679955 . + . mRNA SPAC15A10.02 ; systematic_id "SPAC15A10.02" ; colour "2" ; gene "taf12 ||| SPAC15A10.02" ; Alias "taf12" ; db_xref "SPD:20/20H11" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YDR145W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "taf12" ; product "transcription factor TFIID complex subunit A/ SAGA complex subunit" ;
chromosome1 GeneDB mRNA 1596443 1598035 . - . mRNA SPAC23H4.06 ; systematic_id "SPAC23H4.06" ; colour "2" ; gene "gln1 ||| SPAC23H4.06" ; Alias "gln1" ; db_xref "SPD:16/16G03" ; GO "GO:0006542; glutamine biosynthesis
GO:0019740; nitrogen utilization
GO:0004356; glutamate-ammonia ligase activity
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR035W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gln1" ; product "glutamate-ammonia ligase Gln1" ; EC_number "6.3.1.2" ;
chromosome1 GeneDB mRNA 1940521 1942786 . - . mRNA SPAC3H1.06c ; db_xref "SPD:36/36C01" ; systematic_id "SPAC3H1.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCL069W and YGR224W and YPR198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0016021; integral to membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; gene "SPAC3H1.06c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 4946090 4948084 . - . mRNA SPAC1B3.10c ; db_xref "SPD:37/37F03" ; systematic_id "SPAC1B3.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SEL1 repeat protein; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC1B3.10c" ; product "SEL1 repeat protein, unknown biological role" ;
chromosome1 GeneDB mRNA 3462920 3465342 . + . mRNA SPAC3A11.05c ; systematic_id "SPAC3A11.05c" ; colour "2" ; gene "kms1 ||| SPAC3A11.05c" ; Alias "kms1" ; db_xref "SPD:33/33F01" ; GO "GO:0034993; SUN-KASH complex
GO:0016020; membrane
GO:0031965; nuclear membrane
; spindle pole body
GO:0000742; karyogamy during conjugation with cellular fusion
GO:0006997; nuclear organization and biogenesis
GO:0045141; telomere clustering" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, Karyogamy Meiotic Segregation protein; cv=name_description; date=20091127 ||| term=KASH domain protein; qualifier=predicted; date=20091127 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, recombination defects; db_xref=PMID:9150257; date=20101018" ; primary_name "kms1" ; product "meiotic spindle pole body protein Kms1" ;
chromosome1 GeneDB mRNA 4863887 4869933 . - . mRNA SPAC4F10.16c ; db_xref "SPD:30/30F11" ; systematic_id "SPAC4F10.16c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER166W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005886; plasma membrane
GO:0004012; phospholipid-translocating ATPase activity
GO:0006897; endocytosis
GO:0006886; intracellular protein transport
GO:0045332; phospholipid translocation" ; gene "SPAC4F10.16c" ; product "P-type ATPase (predicted)" ; EC_number "3.6.3.1" ;
chromosome1 GeneDB mRNA 2622466 2623568 . + . mRNA SPAC7D4.09c ; db_xref "SPD:10/10F07" ; systematic_id "SPAC7D4.09c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL049W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0044255; cellular lipid metabolic process" ; colour "7" ; gene "SPAC7D4.09c" ; product "steroid dehydrogenase (predicted)" ;
chromosome1 GeneDB mRNA 3577109 3577762 . + . mRNA SPAC17A2.11 ; db_xref "SPD:07/07E10" ; systematic_id "SPAC17A2.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC17A2.11" ; product "sequence orphan" ; note "see comment on SPAC17A2.10, this region is the same but inverted orientation ||| largish ORF in compositionally biased region, probably not real. has odd translation. this is in region where botton strand is T rich, so lots of LLLFFFFLLFFLSFSFSFS" ;
chromosome1 GeneDB mRNA 5143818 5145515 . + . mRNA SPAC29A4.02c ; systematic_id "SPAC29A4.02c" ; colour "2" ; gene "SPAC29A4.02c" ; obsolete_name "tef3" ; db_xref "SPD:24/24F12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR201C and YKL081W and YPL048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111 ||| term=warning, ncRNA in intron; cv=warning; date=20100217" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; product "translation elongation factor EF-1 gamma subunit" ;
chromosome1 GeneDB mRNA 5419772 5426201 . + . mRNA SPAC29B12.07 ; systematic_id "SPAC29B12.07" ; colour "7" ; gene "sec16 ||| SPAC29B12.07" ; Alias "sec16" ; db_xref "SPD:34/34C01" ; GO "GO:0030127; COPII vesicle coat
GO:0005789; endoplasmic reticulum membrane
GO:0016192; vesicle-mediated transport
GO:0006914; autophagy
GO:0006901; vesicle coating" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec16" ; product "multidomain vesicle coat component Sec16 (predicted)" ;
chromosome1 GeneDB mRNA 3168191 3169332 . - . mRNA SPAC3G9.08 ; systematic_id "SPAC3G9.08" ; colour "2" ; gene "png1 ||| SPAC3G9.08" ; db_xref "SPD:11/11B09" ; Alias "png1" ; GO "GO:0035267; NuA4 histone acetyltransferase complex
GO:0035064; methylated histone residue binding
GO:0019787; small conjugating protein ligase activity
GO:0006281; DNA repair
GO:0005634; nucleus
GO:0090239; regulation of histone H4 acetylation
GO: SFNEW; regulation of histone H4 acetylation in reponse to DNA damage
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0045739; positive regulation of DNA repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YHR090C and YNL097C and YOR064C; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:10805724; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pombe iNhibitor of Growth; db_xref=PMID:20299455; cv=name_description; date=20100624 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20299455; date=20100624" ; primary_name "png1" ; product "ING family homolog Png1" ;
chromosome1 GeneDB mRNA 180423 180911 . + . mRNA SPAC13G6.04 ; systematic_id "SPAC13G6.04" ; colour "7" ; gene "tim8 ||| SPAC13G6.04" ; Alias "tim8" ; db_xref "SPD:42/42A06" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0042719; mitochondrial intermembrane space protein transporter complex
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, dystonia- deafness syndrome; date=20060920 ||| term=disease associated, deafness; date=20080101 ||| term=orthologous to S. cerevisiae YJR135W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080503" ; primary_name "tim8" ; product "TIM22 inner membrane protein import complex subunit Tim8 (predicted)" ;
chromosome1 GeneDB mRNA 3438908 3442082 . + . mRNA SPAC3A11.14c ; systematic_id "SPAC3A11.14c" ; colour "2" ; db_xref "SPD:49/49F02" ; Alias "pkl1" ; synonym "klp1 ||| SPAC3H5.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kinesin Kar3 subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11694582; date=19700101 ||| term=orthologous to S. cerevisiae YPR141C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=complementation, functionally complemented by human HSET; db_xref=PMID:19838064; date=20100121 ||| term=protein sequence feature, NLS; residue=29-38; db_xref=PMID:19838064; date=20100121 ||| term=phenotype, spindle polarity defects; allele=P-ND149|P-ND95|P-ND60; db_xref=PMID:19838064; cv=phenotype; date=20100121 ||| term=phenotype, localization defective, cytoplasmic; allele=P-ND149|P-ND95|P-ND60; db_xref=PMID:19838064; cv=phenotype; date=20100121 ||| term=kinesin-14 family; db_xref=PMID:19838064; date=20100121 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0005875; microtubule associated complex
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0043015; gamma-tubulin binding
GO:0008017; microtubule binding
GO:0008017; microtubule binding
GO:0008569; minus-end-directed microtubule motor activity
GO:0034613; cellular protein localization
GO:0000741; karyogamy
GO:0007019; microtubule depolymerization
GO:0007019; microtubule depolymerization
GO:0007018; microtubule-based movement
GO:0000070; mitotic chromosome segregation
GO:0032888; regulation of mitotic spindle elongation
GO:0031134; sister chromatid biorientation
GO:0090307; spindle assembly involved in mitosis" ; primary_name "pkl1" ; product "kinesin-like protein Pkl1" ;
chromosome1 GeneDB mRNA 4521452 4523050 . - . mRNA SPAC27D7.08c ; db_xref "SPD:23/23H03" ; systematic_id "SPAC27D7.08c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human MET10D ortholog; date=20100301" ; GO "GO:0008168; methyltransferase activity" ; gene "SPAC27D7.08c" ; product "DUF890 family protein" ; EC_number "2.1.1.-" ;
chromosome1 GeneDB mRNA 1708807 1710292 . + . mRNA SPAC664.03 ; db_xref "SPD:21/21G04" ; systematic_id "SPAC664.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR279W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0016593; Cdc73/Paf1 complex
GO:0016571; histone methylation
GO:0016944; RNA polymerase II transcription elongation factor activity" ; gene "SPAC664.03" ; product "RNA polymerase II associated Paf1 complex (predicted)" ;
chromosome1 GeneDB mRNA 2447897 2451032 . - . mRNA SPAC32A11.02c ; db_xref "SPD:38/38D10" ; systematic_id "SPAC32A11.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC32A11.02c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 4490378 4491614 . + . mRNA SPAC17C9.05c ; systematic_id "SPAC17C9.05c" ; colour "2" ; gene "pmc3 ||| SPAC17C9.05c ||| med27" ; Alias "pmc3" ; db_xref "SPD:16/16F12" ; synonym "prk1 ||| med27" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:18310102; cv=phenotype; date=20100406 ||| term=phenotype, colony morphology, flocculation; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=name description, Pombe Mediator Component; cv=name_description; date=20091106 ||| term=species distribution, conserved in Eukaryotes; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20091106" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032569; specific transcription from RNA polymerase II promoter" ; primary_name "pmc3" ; product "mediator complex subunit Pmc3/Med27" ;
chromosome1 GeneDB mRNA 3733638 3735652 . - . mRNA SPAP7G5.02c ; Alias "gua2" ; systematic_id "SPAP7G5.02c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR217W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human GMPS ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=warning, inferred from genetic map position; cv=warning; date=20100217" ; GO "GO:0003922; GMP synthase (glutamine-hydrolyzing) activity
GO:0006177; GMP biosynthesis" ; gene "SPAP7G5.02c ||| gua2" ; primary_name "gua2" ; product "GMP synthase [glutamine-hydrolyzing] Gua2 (predicted)" ; EC_number "6.3.5.2" ;
chromosome1 GeneDB mRNA 4286813 4287431 . - . mRNA SPAC2C4.16c ; systematic_id "SPAC2C4.16c" ; colour "7" ; gene "rps801 ||| rps8 ||| rps8-1 ||| SPAC2C4.16c" ; Alias "rps801" ; db_xref "SPD:06/06F12" ; synonym "rps8-1 ||| rps8" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL072C and YER102W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps801" ; product "40S ribosomal protein S8 (predicted)" ;
chromosome1 GeneDB mRNA 3826640 3828589 . - . mRNA SPAC4H3.03c ; db_xref "SPD:26/26H11" ; systematic_id "SPAC4H3.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081203 ||| term=species distribution, conserved in Bacteria; date=20081203" ; GO "GO:0044264; cellular polysaccharide metabolic process" ; colour "7" ; gene "SPAC4H3.03c" ; product "glucan 1,4-alpha-glucosidase (predicted)" ;
chromosome1 GeneDB mRNA 4919710 4923339 . - . mRNA SPAPB8E5.07c ; systematic_id "SPAPB8E5.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YPL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0000054; ribosome export from nucleus
GO:0005634; nucleus" ; gene "SPAPB8E5.07c" ; product "ribosome biogenesis protein Rrp12 (predicted)" ;
chromosome1 GeneDB mRNA 682835 683660 . + . mRNA SPAC22F3.11c ; systematic_id "SPAC22F3.11c" ; colour "7" ; gene "snu23 ||| SPAC22F3.11c" ; note "possibly missing N-terminal exons ||| PMID:16823372 predict a frameshift at base 124" ; Alias "snu23" ; db_xref "SPD:06/06A12" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20061213 ||| term=zf-C2H2 type; date=20061213 ||| term=orthologous to S. cerevisiae YDL098C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=warning, gene structure updated; db_xref=PMID:16823372; date=20090202" ; primary_name "snu23" ; product "U4/U6 x U5 tri-snRNP complex subunit Snu23 (predicted)" ;
chromosome1 GeneDB mRNA 2367322 2370567 . - . mRNA SPAC17G8.14c ; systematic_id "SPAC17G8.14c" ; colour "2" ; gene "pck1 ||| SPAC22H10.01c ||| SPAC17G8.14c" ; Alias "pck1" ; db_xref "SPD:30/30B06" ; synonym "SPAC22H10.01c" ; GO "GO:0032878; regulation of establishment and/or maintenance of cell polarity
GO:0004697; protein kinase C activity
GO:0006468; protein amino acid phosphorylation
GO:0005515; protein binding
GO:0005515; protein binding
GO:0090334; regulation of cell wall 1,3-beta- glucan biosynthetic process
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:8491190; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C1 domain; date=19700101 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YBL105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "pck1" ; product "protein kinase C (PKC)-like Pck1" ; EC_number "2.7.1.-" ;
chromosome1 GeneDB mRNA 5286117 5287169 . + . mRNA SPAC11E3.03 ; systematic_id "SPAC11E3.03" ; colour "2" ; gene "pcs1 ||| SPAC11E3.03" ; Alias "pcs1" ; db_xref "SPD:12/12F02" ; GO "GO:0000775; chromosome, pericentric region
GO:0000778; condensed nuclear chromosome kinetochore
GO:0033551; monopolin complex
GO:0005730; nucleolus
GO:0051456; attachment of spindle microtubules to kinetochore during meiosis II
GO:0051315; attachment of spindle microtubules to kinetochore during mitosis
GO:0045144; meiotic sister chromatid segregation
GO:0045144; meiotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YCR086W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; db_xref=PMID:12689592; date=20100709" ; primary_name "pcs1" ; product "chromosome segregation protein Pcs1" ;
chromosome1 GeneDB mRNA 66231 69646 . + . mRNA SPAC977.17 ; db_xref "SPD:49/49C06" ; systematic_id "SPAC977.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL054C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0055085; transmembrane transport
GO:0016021; integral to membrane
GO:0022857; transmembrane transporter activity" ; colour "7" ; gene "SPAC977.17" ; product "MIP water channel (predicted)" ;
chromosome1 GeneDB mRNA 1643797 1645832 . - . mRNA SPAC343.04c ; systematic_id "SPAC343.04c" ; colour "7" ; gene "SPAC343.04c" ; note "was incorrectly annotated as gnr1" ; db_xref "SPD:35/35D08" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0045721; negative regulation of gluconeogenesis
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0034657; GID complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCL039W; date=19700101 ||| term=human WDR26 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "WD repeat protein, human WDR26 family, ubiquitin ligase complex subunit (predicted)" ;
chromosome1 GeneDB mRNA 539919 541617 . - . mRNA SPAC2F7.05c ; db_xref "SPD:18/18H06" ; systematic_id "SPAC2F7.05c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0005096; GTPase activator activity
GO:0003743; translation initiation factor activity
GO:0042256; mature ribosome assembly
GO:0006413; translational initiation" ; gene "SPAC2F7.05c" ; product "translation initiation factor eIF5 (predicted)" ;
chromosome1 GeneDB mRNA 27353 27763 . - . mRNA SPAC212.02 ; db_xref "SPD:41/41B07" ; systematic_id "SPAC212.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC212.02" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3523136 3524162 . - . mRNA SPAC16E8.12c ; db_xref "SPD:43/43E07" ; systematic_id "SPAC16E8.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; colour "8" ; gene "SPAC16E8.12c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4642345 4645095 . + . mRNA SPAC30C2.07 ; db_xref "SPD:46/46H10" ; systematic_id "SPAC30C2.07" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC30C2.07" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 5416351 5417280 . - . mRNA SPAC29B12.05c ; db_xref "SPD:13/13A06" ; systematic_id "SPAC29B12.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0005739; mitochondrion
GO:0032543; mitochondrial translation" ; gene "SPAC29B12.05c" ; product "mitochondrial S-adenosylmethionine-dependent methyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 476476 478730 . - . mRNA SPAC24H6.06 ; systematic_id "SPAC24H6.06" ; colour "2" ; gene "sld3 ||| SPAC24H6.06 ||| mug175" ; Alias "sld3" ; db_xref "SPD:37/37E10" ; synonym "mug175" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL113W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0006270; DNA replication initiation
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0005515; protein binding" ; primary_name "sld3" ; product "DNA replication pre-initiation complex subunit Sld3" ;
chromosome1 GeneDB mRNA 5369400 5371812 . - . mRNA SPAC4D7.10c ; systematic_id "SPAC4D7.10c" ; colour "2" ; gene "SPAC4D7.10c ||| spt20" ; Alias "spt20" ; db_xref "SPD:25/25F03" ; GO "GO:0003712; transcription cofactor activity
GO:0016573; histone acetylation
GO:0006366; transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL148C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=human FAM48A and FAM48B1 and FAM48B2 ortholog; date=20110113 ||| term=warning, ncRNA in intron; date=20110131" ; primary_name "spt20" ; product "SAGA complex subunit Spt20" ;
chromosome1 GeneDB mRNA 1649612 1650783 . - . mRNA SPAC343.06c ; db_xref "SPD:43/43H05" ; systematic_id "SPAC343.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, palmitoylated; cv=pt_mod; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YJR100C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0017128; phospholipid scramblase activity
GO:0017121; phospholipid scrambling" ; colour "7" ; gene "SPAC343.06c" ; product "phospholipid scramblase (predicted)" ;
chromosome1 GeneDB mRNA 2992657 2993115 . + . mRNA SPAC31G5.03 ; systematic_id "SPAC31G5.03" ; colour "7" ; gene "rps1101 ||| rps11-1 ||| SPAC31G5.03" ; Alias "rps1101" ; db_xref "SPD:41/41C03" ; synonym "rps11-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR025W and YBR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; primary_name "rps1101" ; product "40S ribosomal protein S11 (predicted)" ;
chromosome1 GeneDB mRNA 650465 652224 . + . mRNA SPAC1D4.08 ; systematic_id "SPAC1D4.08" ; colour "7" ; gene "pis1 ||| SPAC1D4.08" ; Alias "pis1" ; db_xref "SPD:15/15F08" ; GO "GO:0003881; CDP-diacylglycerol-inositol 3- phosphatidyltransferase activity
GO:0006661; phosphatidylinositol biosynthesis
GO:0005783; endoplasmic reticulum
GO:0005741; mitochondrial outer membrane
GO:0005789; endoplasmic reticulum membrane
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR113W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pis1" ; product "CDP-diacylglycerol--inositol 3- phosphatidyltransferase Pis1 (predicted)" ; EC_number "2.7.8.11" ;
chromosome1 GeneDB mRNA 350477 352175 . + . mRNA SPAC630.03 ; systematic_id "SPAC630.03" ; colour "2" ; gene "arp3 ||| act2 ||| SPAC630.03" ; Alias "arp3" ; db_xref "SPD:33/33C01" ; synonym "act2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:1729722; date=19700101 ||| term=orthologous to S. cerevisiae YJR065C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005885; Arp2/3 protein complex
GO:0030479; actin cortical patch
GO:0005515; protein binding
GO:0000915; cytokinesis, contractile ring formation
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0000147; actin polymerization
GO:0051666; actin cortical patch localization
GO:0034314; Arp2/3 complex mediated actin nucleation
GO:0006897; endocytosis" ; primary_name "arp3" ; product "actin-like protein Arp3" ;
chromosome1 GeneDB mRNA 4950347 4951268 . - . mRNA SPAC1B3.12c ; systematic_id "SPAC1B3.12c" ; colour "2" ; gene "rpb10 ||| SPAC1B3.12c" ; Alias "rpb10" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:06/06E09" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
; DNA-directed RNA polymerase III complex
GO:0003899
GO:0005515; protein binding
GO:0006360; transcription from RNA polymerase I promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0006383; transcription from RNA polymerase III promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YOR210W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpb10" ; product "DNA-directed RNA polymerase I, II, and III subunit Rpb10" ;
chromosome1 GeneDB mRNA 206476 208044 . - . mRNA SPAC24B11.06c ; systematic_id "SPAC24B11.06c" ; colour "2" ; db_xref "SPD:16/16A05" ; Alias "sty1" ; synonym "spc1 ||| phh1" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004707; MAP kinase activity
; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030003; cation homeostasis
GO:0034644; cellular response to UV
GO:0071243; cellular response to arsenic
GO:0034605; cellular response to heat
GO:0070301; cellular response to hydrogen peroxide
GO:0006995; cellular response to nitrogen starvation
GO:0034599; cellular response to oxidative stress
GO:0009267; cellular response to starvation
GO:0031990; mRNA export from nucleus during heat stress
GO:0045931; positive regulation of progression through mitotic cell cycle
GO:0006468; protein amino acid phosphorylation
GO:0034613; protein localization in nucleus
GO:0051101; regulation of DNA binding
GO:0043949; regulation of cAMP-mediated signaling
GO:0010847; regulation of chromatin assembly
GO:0010848; regulation of chromatin disassembly
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0035065; regulation of histone acetylation
GO:0051445; regulation of meiotic cell cycle
GO:0010520; regulation of reciprocal meiotic recombination
GO:0070321; regulation of translation in response to nitrogen starvation
GO:0043557; regulation of translation in response to osmotic stress
GO:0043557; regulation of translation in response to osmotic stress
GO:0043556; regulation of translation in response to oxidative stress
GO:0043556; regulation of translation in response to oxidative stress
GO:0071473; cellular response to cation stress
GO:0070301; cellular response to hydrogen peroxide
GO:0051595; response to methylglyoxal
GO:0051595; response to methylglyoxal
GO:0006970; response to osmotic stress
GO:0006883; sodium ion homeostasis
GO:0051403; stress-activated MAPK cascade
GO:0070314; G1 to G0 transition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:10233152; cv=localization; date=19700101 ||| term=orthologous to S. cerevisiae YLR113W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7501024; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:12529438; date=20090110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=phenotype, defective in recovery of translation after hyperosmotic shock; cv=phenotype; qualifier=deletion; db_xref=PMID:18065650; date=20090210 ||| term=phenotype, defective in recovery of translation after oxidative stress; cv=phenotype; qualifier=deletion; db_xref=PMID:18065650; date=20090210 ||| term=phenotype, defective in recovery of translation during nitrogen starvation; cv=phenotype; qualifier=deletion; db_xref=PMID:18065650; date=20090210 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, sensitive to H202; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=target is Srk1; qualifier=phosphorylates; db_xref=PMID:12080074; date=20100429 ||| term=target is Cmk2; qualifier=phosphorylates; db_xref=PMID:12589433; date=20100429 ||| term=target is Atf1; qualifier=phosphorylates; db_xref=PMID:9251044; date=20100429" ; primary_name "sty1" ; product "MAP kinase Sty1" ;
chromosome1 GeneDB mRNA 5011732 5015960 . + . mRNA SPAC890.06 ; systematic_id "SPAC890.06" ; colour "7" ; gene "SPAC890.06" ; note "possible alternative donor for 1st intron at position 10149-10154" ; db_xref "SPD:30/30F01" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER105C and YBL079W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, heart disease; date=20081212 ||| term=human NUP155 ortholog; date=20081212" ; product "nucleoporin Nup157/170 (predicted)" ;
chromosome1 GeneDB mRNA 1324631 1329061 . + . mRNA SPAC6F12.09 ; systematic_id "SPAC6F12.09" ; colour "2" ; gene "rdp1 ||| rdr1 ||| SPAC6F12.09" ; Alias "rdp1" ; db_xref "SPD:39/39B11" ; synonym "rdr1" ; GO "GO:0005721; centric heterochromatin
GO:0031380; nuclear RNA-directed RNA polymerase complex
GO:0031934; mating-type region heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0005634; nucleus
GO:0003968; RNA-directed RNA polymerase activity
GO:0016458; gene silencing by RNA
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0031060; regulation of histone methylation
GO:0031048; small RNA-mediated chromatin silencing
GO:0045141; telomere clustering" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11073995; date=20100712 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824" ; primary_name "rdp1" ; product "RNA-directed RNA polymerase Rdp1" ; EC_number "2.7.7.48" ;
chromosome1 GeneDB mRNA 2855720 2859022 . + . mRNA SPAC8F11.03 ; systematic_id "SPAC8F11.03" ; colour "2" ; gene "msh3 ||| swi4 ||| SPAC8F11.03" ; Alias "msh3" ; db_xref "SPD:47/47G08" ; synonym "swi4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060926 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YCR092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006298; mismatch repair
GO:0007534; gene conversion at mating-type locus
GO:0000228; nuclear chromosome
GO:0007131; meiotic recombination
GO:0005524; ATP binding
GO:0000403; Y-form DNA binding
GO:0000406; double-strand/single-strand DNA junction binding
GO:0000404; loop DNA binding
GO:0032135; DNA insertion or deletion binding
GO:0043570; maintenance of DNA repeat elements" ; primary_name "msh3" ; product "MutS protein homolog 3" ;
chromosome1 GeneDB mRNA 4826230 4826349 . + . mRNA SPAC20G4.09 ; db_xref "PMID:18488015" ; systematic_id "SPAC20G4.09" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "8" ; gene "SPAC20G4.09" ; product "sequence orphan" ; note "intron from Solexa transread data" ;
chromosome1 GeneDB mRNA 828640 831555 . - . mRNA SPAC2G11.11c ; systematic_id "SPAC2G11.11c" ; colour "7" ; gene "prh1 ||| SPAC2G11.11c" ; Alias "prh1" ; db_xref "SPD:40/40H06" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YKL078W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "prh1" ; product "ATP-dependent RNA helicase Prh1 (predicted)" ;
chromosome1 GeneDB mRNA 345576 346676 . - . mRNA SPAC12G12.02 ; systematic_id "SPAC12G12.02" ; colour "7" ; gene "SPAC12G12.02 ||| SPAC630.01c" ; db_xref "SPD:09/09G01" ; synonym "SPAC630.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR272C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=region; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0006364; 35S primary transcript processing
GO:0005737; cytoplasm
GO:0005634; nucleus" ; product "rRNA processing protein, unnamed (predicted)" ;
chromosome1 GeneDB mRNA 2883113 2885311 . - . mRNA SPACUNK4.14 ; systematic_id "SPACUNK4.14" ; colour "10" ; gene "SPACUNK4.14 ||| mdb1" ; db_xref "SPD:35/35A01" ; Alias "mdb1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "mdb1" ; product "BRCT domain protein" ; reserved_name "mdb1" ;
chromosome1 GeneDB mRNA 610886 613277 . + . mRNA SPAC1F3.01 ; systematic_id "SPAC1F3.01" ; colour "7" ; gene "SPAC1F3.01 ||| SPAC3H8.11 ||| rrp6" ; Alias "rrp6" ; db_xref "SPD:28/28E09" ; synonym "SPAC3H8.11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000176; nuclear exosome (RNase complex)
GO:0006364; 35S primary transcript processing
GO:0000175; 3'-5'-exoribonuclease activity
GO:0061013; nuclear-transcribed mRNA catabolism" ; primary_name "rrp6" ; product "exosome subunit Rrp6 (predicted)" ;
chromosome1 GeneDB mRNA 977709 978637 . + . mRNA SPAC222.15 ; systematic_id "SPAC222.15" ; colour "2" ; db_xref "SPD:13/13A01" ; Alias "meu13" ; synonym "SPAC821.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060420 ||| term=protein sequence feature, coiled-coil; date=20070103 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; qualifier=during_meiotic_prophase_I; db_xref=PMID:11447128; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=orthologous to S. cerevisiae YGL033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000790; nuclear chromatin
GO:0005515; protein binding
GO:0007131; meiotic recombination
GO:0007129; synapsis" ; primary_name "meu13" ; product "Tat binding protein 1(TBP-1)-interacting protein (TBPIP) homolog (predicted)" ;
chromosome1 GeneDB mRNA 3802551 3805271 . + . mRNA SPAC1556.06.1 ; Alias "meu1" ; systematic_id "SPAC1556.06.1" ; other_transcript "SPAC1556.06.2" ; synonym "SPAC1556.06a ||| SPAC1556.06" ; colour "8" ; controlled_curation "term=protein sequence feature, NLS; qualifier=predicted; db_xref=PMID:11376151; cv=sequence_feature; date=20060605 ||| term=protein sequence feature, coiled-coil; qualifier=region; cv=sequence_feature; date=20060605 ||| term=gene expression, alternative transcripts; db_xref=PMID:11376151; cv=gene_ex; date=20060605 ||| term=species distribution, sequence orphan; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu1" ; product "sequence orphan" ; shared_id "SPAC1556.06" ;
chromosome1 GeneDB mRNA 1624821 1629936 . - . mRNA SPAP27G11.10c ; systematic_id "SPAP27G11.10c" ; colour "2" ; gene "nup184 ||| SPAP27G11.10c" ; note "Sequence differs at C-term to Q9Y8G4, EM:AF055035" ; Alias "nup184" ; GO "GO:0005643; nuclear pore
GO:0006607; NLS-bearing substrate import into nucleus
GO:0006406; mRNA export from nucleus
GO:0006611; protein export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML103C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nup184" ; product "nucleoporin Nup184" ;
chromosome1 GeneDB mRNA 1399200 1402951 . - . mRNA SPAC20G8.05c ; systematic_id "SPAC20G8.05c" ; colour "2" ; gene "cdc15 ||| SPAC20G8.05c" ; db_xref "SPD:30/30A01" ; Alias "cdc15" ; GO "GO:0032153; cell division site
GO:0032153; cell division site
GO:0005737; cytoplasm
GO:0032178; medial membrane band
GO:0043495; protein anchor
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0030866; cortical actin cytoskeleton organization and biogenesis
GO:0000915; cytokinesis, contractile ring formation
GO:0051125; regulation of actin nucleation
GO:0061166; establishment of endoplasmic reticulum localization involved in endoplasmic reticulum polarization
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=20061127 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, multinucleate; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; cv=gene_ex; db_xref=PMID:12411492; date=19700101 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YMR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=disease associated, cancer; date=20100218 ||| term=human GAS7 ortholog; date=20100218" ; primary_name "cdc15" ; product "extended Fer/CIP4 (EFC) doamin protein Cdc15" ;
chromosome1 GeneDB mRNA 2506299 2507306 . - . mRNA SPAC23H3.08c ; systematic_id "SPAC23H3.08c" ; colour "2" ; gene "bub3 ||| SPAC23H3.08c" ; Alias "bub3" ; db_xref "SPD:14/14H04" ; GO "GO:0007094; mitotic spindle checkpoint
; condensed nuclear chromosome kinetochore
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0005515; protein binding
GO:0033597; mitotic checkpoint complex" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "bub3" ; product "mitotic spindle checkpoint protein Bub3" ;
chromosome1 GeneDB mRNA 3123163 3126653 . + . mRNA SPAC688.08 ; systematic_id "SPAC688.08" ; colour "2" ; gene "srb8 ||| med12 ||| SPAC688.08" ; Alias "srb8" ; db_xref "SPD:48/48F01" ; synonym "med12" ; GO "GO:0016592; Srb-mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=orthologous to S. cerevisiae YCR081W; date=19700101 ||| term=phenotype, colony morphology, flocculation; db_xref=PMID:18310102; cv=phenotype; date=20080729 ||| term=gene expression, transcriptionally represses genes involved in cell surface adhesion; db_xref=PMID:18310102; cv=gene_ex; date=20080729 ||| term=gene expression, transcriptionally represses genes involved in cell surface adhesion; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, possible frameshift; cv=warning; date=20100126" ; primary_name "srb8" ; product "mediator complex subunit Srb8" ;
chromosome1 GeneDB mRNA 2298902 2300068 . + . mRNA SPAC13G7.03 ; systematic_id "SPAC13G7.03" ; colour "7" ; gene "SPAC13G7.03" ; Alias "upf3" ; db_xref "SPD:13/13C07" ; GO "GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR072W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "upf3" ; product "up-frameshift suppressor 3 family protein (predicted)" ;
chromosome1 GeneDB mRNA 2617956 2620320 . + . mRNA SPAC7D4.11c ; systematic_id "SPAC7D4.11c" ; colour "7" ; gene "sec39 ||| SPAC7D4.11c" ; Alias "sec39" ; db_xref "SPD:28/28C07" ; GO "GO:0005783; endoplasmic reticulum
GO:0031965; nuclear membrane
GO:0016192; vesicle-mediated transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR440C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec39" ; product "secretory pathway protein Sec39 (predicted)" ;
chromosome1 GeneDB mRNA 2292742 2295220 . - . mRNA SPAC13G7.01c ; systematic_id "SPAC13G7.01c" ; colour "7" ; gene "erg7 ||| SPAC4G9.21c ||| SPAC13G7.01c" ; Alias "erg7" ; db_xref "SPD:38/38C04" ; synonym "SPAC4G9.21c" ; GO "GO:0006696; ergosterol biosynthesis
GO:0000250; lanosterol synthase activity
GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR072W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "erg7" ; product "lanosterol synthase Erg7 (predicted)" ; EC_number "5.4.99.7" ; reserved_name "erg7" ;
chromosome1 GeneDB mRNA 3864478 3865542 . + . mRNA SPAC1071.05 ; db_xref "SPD:15/15C01" ; systematic_id "SPAC1071.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL110W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human c1orf156 ortholog; date=20100718" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity" ; gene "SPAC1071.05" ; product "S-adenosylmethionine-dependent methyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 5372031 5373736 . + . mRNA SPAC4D7.11 ; systematic_id "SPAC4D7.11" ; colour "10" ; gene "SPAC4D7.11" ; db_xref "SPD:14/14G06" ; Alias "dsc4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, protein coding overlap with adjacent gene; date=20110131" ; primary_name "dsc4" ; product "conserved fungal protein" ; reserved_name "dsc4" ;
chromosome1 GeneDB mRNA 922306 925001 . + . mRNA SPAC1687.11 ; systematic_id "SPAC1687.11" ; colour "7" ; gene "spb1 ||| SPAC1687.11" ; Alias "spb1" ; obsolete_name "pmt2" ; db_xref "SPD:38/38G06" ; GO "GO:0005634; nucleus
GO:0005730; nucleolus
GO:0008649; rRNA methyltransferase activity
GO:0016435; rRNA (guanine) methyltransferase activity
GO:0008650; rRNA (uridine-2'-O-)-methyltransferase activity
GO:0000466; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0000463; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0031167; rRNA methylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL054W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "spb1" ; product "rRNA methyltransferase Spb1 (predicted)" ; EC_number "2.1.1.-" ;
chromosome1 GeneDB mRNA 4654666 4656456 . + . mRNA SPAC144.03 ; systematic_id "SPAC144.03" ; colour "2" ; gene "ade2 ||| min10 ||| min3 ||| SPAC144.03" ; Alias "ade2" ; db_xref "SPD:35/35F09" ; synonym "min10 ||| min3" ; GO "GO:0004019; adenylosuccinate synthase activity
GO:0046086; adenosine biosynthesis
GO:0006164; purine nucleotide biosynthesis
GO:0005737; cytoplasm
GO:0042803; protein homodimerization activity
GO:0071276; cellular response to cadmium ion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL220W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ade2" ; product "adenylosuccinate synthetase Ade2" ; EC_number "6.3.4.4" ;
chromosome1 GeneDB mRNA 4686513 4687277 . + . mRNA SPAC144.16 ; db_xref "SPD:05/05E03" ; systematic_id "SPAC144.16" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR122W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0034085; establishment of mitotic sister chromtid cohesion" ; gene "SPAC144.16" ; product "sister chromatid cohesion protein (predicted)" ;
chromosome1 GeneDB mRNA 4803166 4804539 . + . mRNA SPAC22F8.09 ; systematic_id "SPAC22F8.09" ; colour "7" ; gene "rrp16 ||| nop53 ||| SPAC22F8.09" ; Alias "rrp16" ; db_xref "SPD:22/22H08" ; synonym "nop53" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL146C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005730; nucleolus
GO:0000055; ribosomal large subunit export from nucleus
GO:0042254; ribosome biogenesis" ; primary_name "rrp16" ; product "rRNA processing protein Rrp16 (predicted)" ;
chromosome1 GeneDB mRNA 795038 796740 . + . mRNA SPAC16C9.03 ; systematic_id "SPAC16C9.03" ; colour "7" ; gene "SPAC16C9.03 ||| nmd3" ; Alias "nmd3" ; db_xref "SPD:24/24B11" ; GO "GO:0000027; ribosomal large subunit assembly and maintenance
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR170W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "nmd3" ; product "export adaptor Nmd3 (predicted)" ;
chromosome1 GeneDB mRNA 450957 453541 . - . mRNA SPAC23E2.03c ; systematic_id "SPAC23E2.03c" ; colour "2" ; gene "ste7 ||| SPAC23E2.03c" ; Alias "ste7" ; db_xref "SPD:46/46C06" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:0000747; conjugation with cellular fusion
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ste7" ; product "meiotic suppressor protein Ste7" ;
chromosome1 GeneDB mRNA 3261471 3261955 . - . mRNA SPAC6G9.09c ; Alias "rpl24" ; systematic_id "SPAC6G9.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL031C and YGR148C and YLR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0003723; RNA binding
GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation" ; gene "rpl24 ||| SPAC6G9.09c" ; primary_name "rpl24" ; product "60S ribosomal protein L24 (predicted)" ;
chromosome1 GeneDB mRNA 1086376 1087233 . - . mRNA SPAC1A6.08c ; systematic_id "SPAC1A6.08c" ; colour "8" ; gene "SPAC1A6.08c ||| mug125" ; Alias "mug125" ; obsolete_name "mcp2" ; db_xref "SPD:11/11D05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug125" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3044098 3045034 . + . mRNA SPAC24C9.04 ; db_xref "SPD:02/02E08" ; systematic_id "SPAC24C9.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC24C9.04" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3406215 3407066 . + . mRNA SPAP32A8.02 ; systematic_id "SPAP32A8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "7" ; GO "GO:0042843; D-xylose catabolism
GO:0019568; arabinose catabolism
GO:0032866; xylose reductase activity
GO:0032867; arabinose reductase activity" ; gene "SPAP32A8.02" ; product "xylose and arabinose reductase (predicted)" ;
chromosome1 GeneDB mRNA 2027200 2028853 . - . mRNA SPAC17H9.13c ; db_xref "SPD:21/21G06" ; systematic_id "SPAC17H9.13c" ; colour "7" ; GO "GO:0004349; glutamate 5-kinase activity
GO:0006561; proline biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PUA domain; date=19700101 ||| term=orthologous to S. cerevisiae YDR300C and YHR033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAC17H9.13c" ; product "glutamate 5-kinase (predicted)" ; EC_number "2.7.2.11" ;
chromosome1 GeneDB mRNA 3673737 3674835 . - . mRNA SPAC8C9.17c ; systematic_id "SPAC8C9.17c" ; colour "2" ; gene "spc34 ||| SPAC8C9.17c" ; Alias "spc34" ; db_xref "SPD:04/04G06" ; GO "GO:0007052; mitotic spindle organization and biogenesis
GO:0042729; DASH complex
GO:0031134; sister chromatid biorientation
GO:0005816; spindle pole body
GO:0000778; condensed nuclear chromosome kinetochore
GO:0034613; cellular protein localization
GO:0000779; condensed chromosome, pericentric region" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16079915; date=19700101 ||| term=orthologous to S. cerevisiae YKR037C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "spc34" ; product "DASH complex subunit Spc34" ;
chromosome1 GeneDB mRNA 2141684 2143598 . - . mRNA SPAC23C11.06c ; db_xref "SPD:25/25G08" ; systematic_id "SPAC23C11.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL115C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC23C11.06c" ; product "hydrolase (inferred from context)" ;
chromosome1 GeneDB mRNA 2592545 2594197 . - . mRNA SPAC823.08c ; db_xref "SPD:21/21F05" ; systematic_id "SPAC823.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YHR065C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus
GO:0004004; ATP-dependent RNA helicase activity" ; gene "SPAC823.08c" ; product "ATP-dependent RNA helicase Rrp3 (predicted)" ;
chromosome1 GeneDB mRNA 4244861 4247797 . - . mRNA SPAC1F7.11c ; db_xref "SPD:29/29A06" ; systematic_id "SPAC1F7.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC1F7.11c" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome1 GeneDB mRNA 3020778 3021766 . - . mRNA SPAC31G5.18c ; db_xref "SPD:43/43C06" ; systematic_id "SPAC31G5.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC31G5.18c" ; product "ubiquitin family, human C1ORF55 related" ;
chromosome1 GeneDB mRNA 4942226 4942435 . + . mRNA SPAC1B3.21 ; Alias "tam3" ; systematic_id "SPAC1B3.21" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=orthologous to S. cerevisiae YJL062W-A; date=20090716 ||| term=conserved in Fungi; date=20090716 ||| term=conserved in Fungi only; date=20090716 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "tam3" ; gene "SPAC1B3.21" ; product "mitochondrial conserved protein" ;
chromosome1 GeneDB mRNA 1725858 1728189 . + . mRNA SPAC664.11 ; systematic_id "SPAC664.11" ; colour "2" ; gene "ssc1 ||| ssp1 ||| SPAC664.11" ; Alias "ssc1" ; db_xref "SPD:37/37B12" ; synonym "ssp1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR045C and YEL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0030150; protein import into mitochondrial matrix
GO:0016887; ATPase activity
GO:0030234; enzyme regulator activity
GO:0006457; protein folding
GO:0001405; presequence translocase-associated import motor
GO:0033554; cellular response to stress
GO:0005524; ATP binding" ; primary_name "ssc1" ; product "mitochondrial heat shock protein Hsp70" ;
chromosome1 GeneDB mRNA 2935116 2936240 . - . mRNA SPAC2E1P3.05c ; db_xref "SPD:06/06E05" ; systematic_id "SPAC2E1P3.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; colour "10" ; GO "GO:0009986; cell surface
GO:0046379; extracellular polysaccharide metabolic process" ; gene "SPAC2E1P3.05c" ; product "fungal cellulose binding domain protein" ;
chromosome1 GeneDB mRNA 1150855 1151250 . - . mRNA SPAC56F8.14c ; systematic_id "SPAC56F8.14c" ; colour "8" ; gene "SPAC56F8.14c ||| mug115" ; note "has expression profile on microarray in otherwise apparently gene free region" ; Alias "mug115" ; db_xref "SPD:02/02H11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug115" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1119378 1119763 . + . mRNA SPAC30D11.02c ; db_xref "SPD:01/01C12" ; systematic_id "SPAC30D11.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC30D11.02c" ; product "sequence orphan" ; note "under 100 amino acid threshold" ;
chromosome1 GeneDB mRNA 2205162 2208207 . - . mRNA SPAC1327.01c ; db_xref "SPD:47/47E07" ; systematic_id "SPAC1327.01c" ; synonym "SPAC1783.09c ||| SPAC18G6.16c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPBC530.11c and SPAPB1A11.04C; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome1 GeneDB mRNA 5039661 5042748 . - . mRNA SPAC22E12.11c ; systematic_id "SPAC22E12.11c" ; colour "2" ; gene "set3 ||| SPAC22E12.11c" ; Alias "set3" ; db_xref "SPD:38/38E02" ; GO "GO:0018024; histone-lysine N-methyltransferase activity
GO:0016571; histone methylation
GO:0006338; chromatin remodeling
GO:0034967; Set3 complex
GO:0070210; Rpd3L-Expanded
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YKR029C and YJL105W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "set3" ; product "histone lysine methyltransferase Set3" ;
chromosome1 GeneDB mRNA 1272711 1274527 . - . mRNA SPAPB17E12.04c ; Alias "csn2" ; systematic_id "SPAPB17E12.04c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006974; response to DNA damage stimulus
GO:0010388; cullin deneddylation
GO:0008180; signalosome" ; gene "csn2 ||| SPAPB17E12.04c" ; primary_name "csn2" ; product "COP9/signalosome complex subunit Csn2" ;
chromosome1 GeneDB mRNA 1987325 1991065 . - . mRNA SPAC9G1.10c ; db_xref "SPD:48/48E02" ; systematic_id "SPAC9G1.10c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR109W; date=19700101 ||| term=PQQ repeat; qualifier=inferred from context; date=20070723 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0006897; endocytosis
GO:0046856; phosphoinositide dephosphorylation
GO:0031505; cell wall organization and biogenesis
GO:0004439; phosphoinositide 5-phosphatase activity
GO:0048017; inositol lipid-mediated signaling
GO:0046488; phosphatidylinositol metabolism" ; gene "SPAC9G1.10c" ; product "inositol polyphosphate phosphatase (predicted)" ;
chromosome1 GeneDB mRNA 2154795 2155037 . + . mRNA SPAC23C11.12 ; systematic_id "SPAC23C11.12" ; colour "2" ; gene "hcn1 ||| SPAC23C11.12" ; db_xref "SPD:01/01B08" ; Alias "hcn1" ; GO "GO:0005680; anaphase-promoting complex
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0000920; cell separation during cytokinesis
GO:0016567; protein ubiquitination
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target of Cdc2; qualifier=in_vitro|phosphorylated_by; db_xref=PMID:16950791; date=20070216 ||| term=orthologous to S. cerevisiae YFR036W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; residue=Ser48; db_xref=PMID:16950791; date=20090213 ||| term=human CDC26 ortholog; date=20100212 ||| term=species distribution, conserved in Eukaryotes only; date=20100212 ||| term=species distribution, conserved in Vertebrates; date=20100212 ||| term=species distribution, conserved in Metazoa; date=20100212 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; primary_name "hcn1" ; product "anaphase-promoting complex subunit Hcn1" ;
chromosome1 GeneDB mRNA 289806 291732 . + . mRNA SPAC1F5.03c ; db_xref "SPD:20/20H05" ; systematic_id "SPAC1F5.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR009C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAC1F5.03c" ; product "FAD-dependent oxidoreductase (predicted)" ;
chromosome1 GeneDB mRNA 3892148 3892758 . - . mRNA SPAC926.05c ; systematic_id "SPAC926.05c" ; colour "7" ; gene "SPAC926.05c" ; Alias "dph4" ; db_xref "SPD:04/04A12" ; GO "GO:0030544; Hsp70 protein binding
GO:0017183; peptidyl-diphthamide biosynthetic process from peptidyl-histidine
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CSL; date=19700101 ||| term=orthologous to S. cerevisiae YJR097W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human DPH4 ortholog; date=20100120" ; primary_name "dph4" ; product "diphthamide biosynthesis protein Dph4 (predicted)" ;
chromosome1 GeneDB mRNA 686576 688825 . + . mRNA SPAC22F3.09c ; systematic_id "SPAC22F3.09c" ; colour "2" ; gene "res2 ||| mcs1 ||| pct1 ||| SPAC22F3.09c" ; Alias "res2" ; db_xref "SPD:37/37E05" ; synonym "mcs1 ||| pct1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Mitotic Catastrophe Suppressor; db_xref=PMID:2474475; cv=name_description; date=19700101 ||| term=APSES domain; date=19700101 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; date=20100122" ; GO "GO:0030907; MBF transcription complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0045896; regulation of transcription, mitotic
GO:0051037; regulation of transcription, meiotic
GO:0005515; protein binding
GO:0000083; regulation of transcription involved in G1/S phase of mitotic cell cycle
GO:0010551; regulation of gene-specific transcription from RNA polymerase II promoter" ; primary_name "res2" ; product "MBF transcription factor complex subunit Res2" ;
chromosome1 GeneDB mRNA 639318 640175 . + . mRNA SPAC1D4.01 ; systematic_id "SPAC1D4.01" ; colour "10" ; gene "SPAC1D4.01 ||| SPAC1F3.11" ; db_xref "SPD:11/11D04" ; synonym "SPAC1F3.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20100714 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100714 ||| term=species distribution, conserved in Metazoa; date=20100714 ||| term=species distribution, conserved in Vertebrates; date=20100714 ||| term=human c9Orf78 ortholog; date=20100714 ||| term=species distribution, conserved in Eukaryotes; date=20100714 ||| term=species distribution, conserved in Eukaryotes only; date=20100714 ||| term=species distribution, conserved in Fungi; date=20100714 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100714" ; GO "GO:0005634; nucleus" ; product "human c9orf78 ortholog" ;
chromosome1 GeneDB mRNA 4903485 4904197 . - . mRNA SPAC19B12.11c ; db_xref "SPD:03/03F06" ; systematic_id "SPAC19B12.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YLR074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human ZNF593 ortholog; date=20090927" ; colour "10" ; GO "GO:0005634; nucleus" ; gene "SPAC19B12.11c" ; product "zinc finger protein, human ZNF593 ortholog" ;
chromosome1 GeneDB mRNA 1159626 1160000 . - . mRNA SPAC22A12.02c ; systematic_id "SPAC22A12.02c" ; colour "8" ; gene "SPAC22A12.02c ||| mug103" ; db_xref "SPD:02/02F06" ; Alias "mug103" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug103" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1421817 1422972 . + . mRNA SPAC3A12.02 ; db_xref "SPD:15/15E03" ; systematic_id "SPAC3A12.02" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0004427; inorganic diphosphatase activity
GO:0000287; magnesium ion binding
GO:0006796; phosphate metabolic process
GO:0009060; aerobic respiration" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR011C and YMR267W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=subunit composition, homodimer; cv=subunit_composition; qualifier=predicted; evidence=ISS; date=20090907" ; gene "SPAC3A12.02" ; product "mitochondrial inorganic diphosphatase (predicted)" ; EC_number "3.6.1.1" ;
chromosome1 GeneDB mRNA 2903369 2907202 . - . mRNA SPAPYUK71.03c ; Alias "syn1" ; systematic_id "SPAPYUK71.03c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YML072C and YNL087W and YOR086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0008289; lipid binding
GO:0006906; vesicle fusion
GO:0031410; cytoplasmic vesicle
GO:0051286; cell tip
GO:0005794; Golgi apparatus
GO:0030659; cytoplasmic vesicle membrane
GO:0005509; calcium ion binding
GO:0005543; phospholipid binding" ; gene "SPAPYUK71.03c" ; primary_name "syn1" ; product "synaptotagmin family C2 domain protein, Syn1" ;
chromosome1 GeneDB mRNA 3332574 3334664 . + . mRNA SPAC26A3.01 ; systematic_id "SPAC26A3.01" ; colour "2" ; gene "sxa1 ||| SPAC2E1P5.06 ||| SPAC26A3.01" ; note "does not appear to be a yapsin (PMID 11115118)" ; Alias "sxa1" ; db_xref "SPD:25/25F10" ; synonym "SPAC2E1P5.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR120C and YDR144C and YLR121C and YIR039C and YDR349C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; GO "GO:0000747; conjugation with cellular fusion
GO:0005886; plasma membrane
GO:0009986; cell surface
GO:0004190; aspartic-type endopeptidase activity" ; primary_name "sxa1" ; product "aspartic protease Sxa1" ; EC_number "3.4.23.-" ;
chromosome1 GeneDB mRNA 3375516 3375818 . + . mRNA SPAC8E11.08c ; systematic_id "SPAC8E11.08c" ; colour "6" ; gene "SPAC8E11.08c" ; product "dubious" ;
chromosome1 GeneDB mRNA 4748861 4751253 . - . mRNA SPAPYUG7.03c ; Alias "mid2" ; systematic_id "SPAPYUG7.03c" ; colour "2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, cell morphology, elongated and multiseptate; db_xref=PMID:12654901; date=20100727 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:16317047; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YJR092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000920; cell separation during cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0005525; GTP binding
GO:0005940; septin ring
GO:0031106; septin ring organization
GO:0031107; septin ring disassembly
GO:0031097; medial ring" ; gene "mid2 ||| SPAPYUG7.03c" ; primary_name "mid2" ; product "medial ring protein Mid2" ;
chromosome1 GeneDB mRNA 3319260 3319979 . + . mRNA SPAPB1E7.12 ; systematic_id "SPAPB1E7.12" ; colour "7" ; gene "rps602 ||| rps6-2 ||| rps6 ||| SPAPB1E7.12" ; Alias "rps602" ; synonym "rps6-2 ||| rps6" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL090C and YBR181C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; primary_name "rps602" ; product "40S ribosomal protein S6 (predicted)" ;
chromosome1 GeneDB mRNA 1582525 1585553 . - . mRNA SPAC23H4.14 ; systematic_id "SPAC23H4.14" ; colour "7" ; gene "vam6 ||| vps39 ||| SPAC23H4.14" ; Alias "vam6" ; db_xref "SPD:47/47D12" ; synonym "vps39" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030897; HOPS complex
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0042144; vacuole fusion, non-autophagic
GO:0048278; vesicle docking
GO:0000324; fungal-type vacuole
GO:0000329; vacuolar membrane" ; primary_name "vam6" ; product "guanyl-nucleotide exchange factor, HOPS complex subunit Vam6 (predicted)" ;
chromosome1 GeneDB mRNA 4586584 4588058 . - . mRNA SPAC12B10.08c ; db_xref "SPD:50/50G03" ; systematic_id "SPAC12B10.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0005524; ATP binding
GO:0032267; tRNA(Ile)-lysidine synthase
GO:0006400; tRNA modification
GO:0032543; mitochondrial translation" ; gene "SPAC12B10.08c" ; product "mitochondrial tRNA(Ile)-lysidine synthetase family (predicted)" ;
chromosome1 GeneDB mRNA 1832317 1833811 . + . mRNA SPAC1002.18 ; systematic_id "SPAC1002.18" ; colour "10" ; gene "SPAC1002.18" ; db_xref "SPD:19/19B08" ; Alias "urg3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Uracil Regulatable Gene; cv=name_description; date=20060912 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "urg3" ; product "DUF1688 family protein" ;
chromosome1 GeneDB mRNA 4170550 4171657 . + . mRNA SPAC25B8.09 ; db_xref "SPD:09/09C07" ; systematic_id "SPAC25B8.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YER175C and YHR209W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Eukaryotes only; date=20100827" ; GO "GO:0046547; trans-aconitate 3-methyltransferase activity
GO:0005829; cytosol
GO:0044262; cellular carbohydrate metabolism" ; gene "SPAC25B8.09" ; product "trans-aconitate 3-methyltransferase (predicted)" ; EC_number "2.1.1.145" ;
chromosome1 GeneDB mRNA 3599103 3599783 . + . mRNA SPAC17G6.06 ; systematic_id "SPAC17G6.06" ; colour "7" ; gene "rps2401 ||| rps24-1 ||| rps24 ||| SPAC17G6.06" ; Alias "rps2401" ; db_xref "SPD:04/04D02" ; obsolete_name "rps24a" ; synonym "rps24-1 ||| rps24" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER074W and YIL069C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0006364; rRNA processing" ; primary_name "rps2401" ; product "40S ribosomal protein S24 (predicted)" ;
chromosome1 GeneDB mRNA 1217153 1218081 . + . mRNA SPAC10F6.06 ; systematic_id "SPAC10F6.06" ; colour "10" ; gene "vip1 ||| SPAC10F6.06" ; Alias "vip1" ; db_xref "SPD:09/09E11" ; GO "GO:0003723; RNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "vip1" ; product "RNA-binding protein Vip1" ;
chromosome1 GeneDB mRNA 2098262 2101780 . - . mRNA SPAC25A8.01c ; systematic_id "SPAC25A8.01c" ; colour "2" ; gene "fft3 ||| SPAC25A8.01c" ; Alias "fft3" ; db_xref "SPD:47/47C01" ; synonym "snf2SR" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CUE domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YAL019W; date=19700101 ||| term=phenotype, sensitive to high temperature; cv=phenotype; db_xref=PMID:18422602; date=20080718 ||| term=phenotype, sensitive to cold; cv=phenotype; db_xref=PMID:18422602; date=20080718 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016585; chromatin remodeling complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0003677; DNA binding
GO:0006338; chromatin remodeling
GO:0032017; positive regulation of Ran protein signal transduction
GO:0032017; positive regulation of Ran protein signal transduction
GO:0005634; nucleus
GO:0000790; nuclear chromatin
GO:0005515; protein binding
GO:0008094; DNA-dependent ATPase activity" ; primary_name "fft3" ; product "fun thirty related protein Fft3" ;
chromosome1 GeneDB mRNA 1966920 1967858 . + . mRNA SPAC3H1.14 ; systematic_id "SPAC3H1.14" ; colour "7" ; gene "SPAC9G1.01 ||| SPAC3H1.14" ; Alias "SPAC9G1.01" ; db_xref "SPD:06/06D06" ; synonym "SPAC9G1.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR066C and YBR105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030659; cytoplasmic vesicle membrane
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0006623; protein targeting to vacuole
GO:0007039; vacuolar protein catabolic process
GO:0051469; vesicle fusion with vacuole
GO:0016192; vesicle-mediated transport
GO:0034657; GID complex
GO:0045721; negative regulation of gluconeogenesis" ; primary_name "SPAC9G1.01" ; product "cytoplasmic vesicle protein, Vid24 family (predicted)" ;
chromosome1 GeneDB mRNA 4481792 4483837 . - . mRNA SPAC17C9.10 ; systematic_id "SPAC17C9.10" ; colour "2" ; gene "stm1 ||| SPAC17C9.10" ; Alias "stm1" ; db_xref "SPD:10/10E03" ; GO "GO:0004930; G-protein coupled receptor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PQ loop; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:11461899; date=19700101 ||| term=orthologous to S. cerevisiae YBR147W and YDR090C and YDR352W and YOL092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "stm1" ; product "G-protein coupled receptor Stm1" ;
chromosome1 GeneDB mRNA 3665987 3669087 . + . mRNA SPAC8C9.14 ; systematic_id "SPAC8C9.14" ; colour "2" ; gene "prr1 ||| SPAC8C9.14" ; Alias "prr1" ; db_xref "SPD:38/38H04" ; GO "GO:0000156; two-component response regulator activity
GO:0000747; conjugation with cellular fusion
GO:0006355; regulation of transcription, DNA- dependent
GO:0034599; cellular response to oxidative stress
GO:0034599; cellular response to oxidative stress
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12596864; date=19700101 ||| term=orthologous to S. cerevisiae YGL073W and YHR206W and YOR140W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "prr1" ; product "transcription factor Prr1" ;
chromosome1 GeneDB mRNA 405746 407507 . + . mRNA SPAC31A2.10 ; db_xref "SPD:34/34H01" ; systematic_id "SPAC31A2.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL164C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0030695; GTPase regulator activity
GO:0007264; small GTPase mediated signal transduction" ; gene "SPAC31A2.10" ; product "Ran GTPase binding protein (predicted)" ;
chromosome1 GeneDB mRNA 1316933 1319020 . - . mRNA SPAC6F12.05c ; systematic_id "SPAC6F12.05c" ; colour "2" ; gene "tnr3 ||| SPAC6F12.05c" ; Alias "tnr3" ; db_xref "SPD:35/35E08" ; GO "GO:0004788; thiamin diphosphokinase activity
GO:0004788; thiamin diphosphokinase activity
GO:0009229; thiamin diphosphate biosynthesis
GO:0070624; negative regulation of thiamin biosynthesis
GO:0005737; cytoplasm
GO:0016787; hydrolase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR142W (N-term); date=19700101 ||| term=orthologous to S. cerevisiae YOR143C (C-term); date=19700101 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20071106" ; primary_name "tnr3" ; product "thiamine diphosphokinase Tnr3" ; EC_number "2.7.6.2" ;
chromosome1 GeneDB mRNA 2485132 2489039 . - . mRNA SPAC19A8.02 ; db_xref "SPD:39/39C06" ; systematic_id "SPAC19A8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YHR155W and YNL257C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC19A8.02" ; product "pleckstrin homology domain protein" ;
chromosome1 GeneDB mRNA 3202704 3203656 . + . mRNA SPAC1486.11 ; systematic_id "SPAC1486.11" ; colour "7" ; gene "SPAC1486.11" ; note "clearly expressed during vegetative growth" ; Alias "fmc1" ; synonym "new3" ; controlled_curation "term=ortholoogous to S. cerevisiae YIL098C; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=conserved in Eukaryotes; date=20090721 ||| term=conserved in Metazoa; date=20090721 ||| term=conserved in Vertebrates; date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; GO "GO:0005759; mitochondrial matrix
GO:0033615; mitochondrial proton-transporting ATP synthase complex assembly" ; primary_name "fmc1" ; product "mitochondrial matrix protein, F1F0 ATP synthase assembly factor Fmc1 (predicted)" ;
chromosome1 GeneDB mRNA 950192 950685 . - . mRNA SPAC222.04c ; systematic_id "SPAC222.04c" ; colour "2" ; gene "ies6 ||| SPAC222.04c" ; Alias "ies6" ; db_xref "SPD:02/02C07" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL044W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ies6" ; product "Ino80 complex subunit Ies6" ;
chromosome1 GeneDB mRNA 3145867 3146559 . + . mRNA SPAC3G9.15c ; systematic_id "SPAC3G9.15c" ; colour "7" ; gene "fcf2 ||| SPAC3G9.15c" ; Alias "fcf2" ; db_xref "SPD:08/08A09" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fcf2" ; product "rRNA processing protein Fcf2 (predicted)" ;
chromosome1 GeneDB mRNA 4978507 4979881 . + . mRNA SPAC1952.07 ; systematic_id "SPAC1952.07" ; colour "2" ; gene "rad1 ||| SPAC1952.07" ; Alias "rad1" ; db_xref "SPD:32/32E08" ; GO "GO:0030896; checkpoint clamp complex
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007095; mitotic cell cycle G2-M transition DNA damage checkpoint
GO:0006281; DNA repair
GO:0005515; protein binding
GO:0031573; intra-S DNA damage checkpoint" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR368W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rad1" ; product "checkpoint clamp complex protein Rad1" ;
chromosome1 GeneDB mRNA 3243146 3245236 . - . mRNA SPAC6G9.02c ; systematic_id "SPAC6G9.02c" ; colour "7" ; gene "nop9 ||| SPAC6G9.02c" ; Alias "nop9" ; db_xref "SPD:27/27B07" ; GO "GO:0006364; rRNA processing
GO:0003723; RNA binding
GO:0005730; nucleolus
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YJL010C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nop9" ; product "RNA-binding protein Nop9 (predicted)" ;
chromosome1 GeneDB mRNA 1194197 1195161 . - . mRNA SPAC4C5.02c ; systematic_id "SPAC4C5.02c" ; colour "2" ; gene "ryh1 ||| hos1 ||| SPAC4C5.02c" ; Alias "ryh1" ; db_xref "SPD:11/11A03" ; synonym "hos1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:2112088; date=20060220 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:17287513; date=20100917 ||| term=orthologous to S. cerevisiae YLR262C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, prenylated; qualifier=predicted; cv=pt_mod; residue=199-201; date=20090729" ; GO "GO:0005794; Golgi apparatus
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006886; intracellular protein transport
GO:0071470; cellular response to osmotic stress
GO:0042147; retrograde transport, endosome to Golgi
GO:0007264; small GTPase mediated signal transduction" ; primary_name "ryh1" ; product "GTPase Ryh1" ;
chromosome1 GeneDB mRNA 531752 533677 . - . mRNA SPAC2F7.02c ; db_xref "SPD:14/14A05" ; systematic_id "SPAC2F7.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL010C and YLR019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0004721; phosphoprotein phosphatase activity
GO:0033554; cellular response to stress
GO:0006470; protein amino acid dephosphorylation" ; gene "SPAC2F7.02c" ; product "NLI interacting factor family phosphatase (predicted)" ;
chromosome1 GeneDB mRNA 2347893 2348331 . + . mRNA SPAC17G8.15 ; Alias "new1" ; systematic_id "SPAC17G8.15" ; colour "10" ; controlled_curation "term=conserved Fungi only; date=20090720 ||| term=conserved in Fungi; date=20090720 ||| term=conserved in Eukaryotes; date=20090720 ||| term=no apparent S. cerevisiae ortholog; date=20090720 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=phenotype, growth defect, slow growth; db_xref=PMID:21270388; date=20110131" ; primary_name "new1" ; gene "SPAC17G8.15" ; product "histone-like transcription factor and archael histone family protein" ;
chromosome1 GeneDB mRNA 5330229 5332706 . - . mRNA SPAP8A3.09c ; systematic_id "SPAP8A3.09c" ; colour "2" ; gene "paa1 ||| SPAP8A3.09c" ; note "we predict MQTEN at N terminus instead of MLDNS" ; Alias "paa1" ; GO "GO:0000159; protein phosphatase type 2A complex
GO:0030952; establishment and/or maintenance of cytoskeleton polarity
GO:0006470; protein amino acid dephosphorylation
GO:0019888; protein phosphatase regulator activity
GO:0006417; regulation of translation
GO:0007094; mitotic cell cycle spindle assembly checkpoint" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9078365O; date=19700101 ||| term=orthologous to S. cerevisiae YAL016W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "paa1" ; product "protein phosphatase regulatory subunit Paa1" ;
chromosome1 GeneDB mRNA 3728516 3729034 . - . mRNA SPAC15E1.07c ; systematic_id "SPAC15E1.07c" ; colour "2" ; gene "moa1 ||| mug159 ||| SPAC15E1.07c" ; Alias "moa1" ; db_xref "SPD:05/05B07" ; synonym "mug159" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; qualifier=during_meiosis_I; db_xref=PMID:12748297; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, MOnopolar Attatchment; cv=name_description; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0000939; inner kinetochore of condensed chromosome
GO:0005515; protein binding
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0045132; meiotic chromosome segregation
GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination
GO:0051754; meiotic sister chromatid cohesion, centromeric
GO:0051177; meiotic sister chromatid cohesion
GO:0034613; cellular protein localization" ; primary_name "moa1" ; product "meiotic cohesin complex associated protein Moa1" ;
chromosome1 GeneDB mRNA 151913 152855 . + . mRNA SPAC5H10.03 ; db_xref "SPD:41/41D12" ; systematic_id "SPAC5H10.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPAC513.02; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; colour "10" ; gene "SPAC5H10.03" ; product "phosphoglycerate mutase family" ;
chromosome1 GeneDB mRNA 1542763 1545184 . + . mRNA SPAC57A7.04c ; systematic_id "SPAC57A7.04c" ; colour "2" ; gene "SPAC57A7.04c ||| pabp" ; note "pab1 used previously by SPAC227.07c" ; Alias "pabp" ; db_xref "SPD:27/27B02" ; obsolete_name "pab1" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008143; poly(A) binding
GO:0006406; mRNA export from nucleus
GO:0006446; regulation of translational initiation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12112233; date=19700101 ||| term=orthologous to S. cerevisiae YER165W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pabp" ; product "mRNA export shuttling protein" ;
chromosome1 GeneDB mRNA 3481738 3484481 . + . mRNA SPAC328.04 ; db_xref "SPD:38/38A08" ; systematic_id "SPAC328.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YER047C and YPL074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0016887; ATPase activity
GO:0005524; ATP binding" ; gene "SPAC328.04" ; product "AAA family ATPase, unknown biological role" ;
chromosome1 GeneDB mRNA 2466377 2467259 . - . mRNA SPAC19A8.10 ; systematic_id "SPAC19A8.10" ; colour "2" ; gene "rfp1 ||| SPAC19A8.10 ||| mug140" ; Alias "rfp1" ; db_xref "SPD:09/09D11" ; synonym "mug140" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDL013W; date=20070716 ||| term=human RNF4 family; db_xref=PMID:17502373; date=20070716 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17502373; date=20070716 ||| term=SUMO interaction motif; db_xref=PMID:17762865; date=20071123 ||| term=target is Rad60; db_xref=PMID:17762865; date=20071123 ||| term=complementation, functionally complemented by human RNF4; db_xref=PMID:17762865|PMID:17502373; cv=complementation; date=20071123 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0033768; SUMO-targeted ubiquitin ligase complex
GO:0005634; nucleus
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006281; DNA repair
GO:0033234; negative regulation of protein sumoylation
GO:0033234; negative regulation of protein sumoylation
GO:0016567; protein ubiquitination
GO:0007346; regulation of mitotic cell cycle
GO:0051438; regulation of ubiquitin-protein ligase activity
GO:0006974; response to DNA damage stimulus" ; primary_name "rfp1" ; product "SUMO-targeted ubiquitin-protein ligase subunit Rfp1" ;
chromosome1 GeneDB mRNA 5071016 5073872 . - . mRNA SPAC1006.03c ; db_xref "SPD:38/38H01" ; systematic_id "SPAC1006.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=20060226 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CCDc131 ortholog; date=20100704" ; colour "10" ; gene "SPAC1006.03c" ; product "human CCDC131 homolog" ;
chromosome1 GeneDB mRNA 3946578 3947774 . + . mRNA SPAC2F3.11 ; db_xref "SPD:19/19B04" ; systematic_id "SPAC2F3.11" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR201C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005829; cytosol
GO:0005759; mitochondrial matrix
GO:0005886; plasma membrane
GO:0004309; exopolyphosphatase activity
GO:0006798; polyphosphate catabolic process" ; gene "SPAC2F3.11" ; product "exopolyphosphatase (predicted)" ; EC_number "3.6.1.11" ;
chromosome1 GeneDB mRNA 1936012 1938157 . - . mRNA SPAC3H1.04c ; systematic_id "SPAC3H1.04c" ; colour "7" ; gene "mdm31 ||| SPAC3H1.04c" ; note "PMID:16823372 predict a frameshift at base 1684, unconfirmed" ; Alias "mdm31" ; db_xref "SPD:37/37A01" ; GO "GO:0000002; mitochondrial genome maintenance
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR194W and YOR147W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:16823372; date=20090924" ; primary_name "mdm31" ; product "mitochondrial inner membrane protein Mdm31 (predicted)" ;
chromosome1 GeneDB mRNA 2562736 2564221 . - . mRNA SPAC4A8.09c ; systematic_id "SPAC4A8.09c" ; colour "2" ; gene "cwf21 ||| SPAC4A8.09c" ; note "annexin v-binding protein?" ; Alias "cwf21" ; db_xref "SPD:13/13D08" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR482C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cwf21" ; product "complexed with Cdc5 protein Cwf21" ;
chromosome1 GeneDB mRNA 4826683 4828141 . - . mRNA SPAC20G4.07c ; systematic_id "SPAC20G4.07c" ; colour "2" ; gene "sts1 ||| SPAC20G4.07c ||| erg4" ; Alias "sts1" ; db_xref "SPD:44/44C10" ; synonym "erg4" ; GO "GO:0006696; ergosterol biosynthesis
GO:0042493; response to drug
GO:0006970; response to osmotic stress
GO:0005789; endoplasmic reticulum membrane
GO:0000246; delta24(24-1) sterol reductase activity
GO:0071473; cellular response to cation stress
GO:0006623; protein targeting to vacuole
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthesis
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane
GO:0030437; ascospore formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1320960; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sensitive to staurosporine; db_xref=PMID:1320960; cv=phenotype; date=20091123 ||| term=phenotype, sensitive to chloramphenicol; db_xref=PMID:1320960; cv=phenotype; date=20091123 ||| term=phenotype, sensitive to caffeine; db_xref=PMID:1320960; cv=phenotype; date=20091123 ||| term=phenotype, sensitive to sorbitol; db_xref=PMID:1320960; cv=phenotype; date=20091123 ||| term=phenotype, pleiotropic effects ; db_xref=PMID:1320960; cv=phenotype; date=20091123 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sporulation defects; db_xref=PMID:18310029; cv=phenotype; date=20091124" ; primary_name "sts1" ; product "C-24(28) sterol reductase Sts1" ; EC_number "1.3.1.71" ;
chromosome1 GeneDB mRNA 3010654 3012196 . + . mRNA SPAC31G5.13 ; systematic_id "SPAC31G5.13" ; colour "2" ; gene "rpn11 ||| pad1 ||| sks1 ||| bfr2 ||| mts5 ||| SPAC31G5.13" ; Alias "rpn11" ; db_xref "SPD:12/12H09" ; synonym "pad1 ||| sks1 ||| bfr2 ||| mts5" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7769002; date=19700101 ||| term=orthologous to S. cerevisiae YFR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:7769002; date=20100705 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:7769002; date=20100705 ||| term=human PSMD14 ortholog; date=20101001" ; GO "GO:0000502; proteasome complex (sensu Eukaryota)
GO:0007346; regulation of mitotic cell cycle
GO:0000266; mitochondrial fission
GO:0005634; nucleus
GO:0034399; nucleur periphery
GO:0000502; protease complex
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0071947; protein deubiquitination involved in proteasomal ubiquitin-dependent protein catabolic process" ; primary_name "rpn11" ; product "19S proteasome regulatory subunit Rpn11" ;
chromosome1 GeneDB mRNA 2875888 2876217 . + . mRNA SPACUNK4.19 ; systematic_id "SPACUNK4.19" ; colour "8" ; gene "SPACUNK4.19 ||| mug153" ; db_xref "SPD:51/51G07" ; Alias "mug153" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug153" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 887656 889033 . + . mRNA SPAC23G3.11 ; systematic_id "SPAC23G3.11" ; colour "7" ; gene "rpn6 ||| SPAC23G3.11" ; Alias "rpn6" ; db_xref "SPD:32/32H08" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpn6" ; product "19S proteasome regulatory subunit Rpn6 (predicted)" ;
chromosome1 GeneDB mRNA 2408304 2414017 . - . mRNA SPAC6B12.02c ; systematic_id "SPAC6B12.02c" ; colour "2" ; gene "mus7 ||| SPAC6B12.02c ||| mms22" ; Alias "mus7" ; db_xref "SPD:48/48H08" ; synonym "mms22" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17307401|PMID:17660542; date=20070222 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to MMS; cv=phenotype; db_xref=PMID:17307401; date=20091215 ||| term=phenotype, sensitive to CPT; cv=phenotype; db_xref=PMID:17307401; date=20091215 ||| term=phenotype, sensitive to HU; cv=phenotype; db_xref=PMID:17307401; date=20091215 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance|deletion; cv=phenotype; db_xref=PMID:17307401; date=20091215 ||| term=orthologous to S. cerevisiae YLR320W; db_xref=PMID:17660542; date=20071003 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005634; nucleus
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0045005; maintenance of fidelity during DNA- dependent DNA replication
GO:0031297; collapsed replication fork processing
GO:0031297; collapsed replication fork processing
GO:0031297; collapsed replication fork processing
GO:0000724; double-strand break repair via homologous recombination
GO:0006302; double-strand break repair
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus" ; primary_name "mus7" ; product "DNA repair protein Mus7/Mms22" ;
chromosome1 GeneDB mRNA 4230850 4231605 . + . mRNA SPAC1F7.06 ; db_xref "SPD:09/09C08" ; systematic_id "SPAC1F7.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR533C and YPL280W and YOR391C and YMR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC1F7.06" ; product "ThiJ domain protein" ;
chromosome1 GeneDB mRNA 1595175 1596024 . + . mRNA SPAC23H4.07c ; systematic_id "SPAC23H4.07c" ; colour "7" ; gene "srp102 ||| SPAC23H4.07c" ; Alias "srp102" ; db_xref "SPD:08/08G06" ; GO "GO:0005785; signal recognition particle receptor complex
GO:0005047; signal recognition particle binding
GO:0006614; SRP-dependent cotranslational protein targeting to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL154W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "srp102" ; product "signal recognition particle receptor beta subunit Srp102 (predicted)" ;
chromosome1 GeneDB mRNA 5240466 5242915 . + . mRNA SPAC14C4.07 ; db_xref "SPD:26/26H04" ; systematic_id "SPAC14C4.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL163C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0016021; integral to membrane
GO:0055085; transmembrane transport" ; gene "SPAC14C4.07" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 3567223 3567861 . - . mRNA SPAC17A2.07c ; db_xref "SPD:07/07C06" ; systematic_id "SPAC17A2.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis" ; gene "SPAC17A2.07c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2039615 2040404 . - . mRNA SPAC607.02c ; db_xref "SPD:10/10A02" ; systematic_id "SPAC607.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC607.02c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 4156526 4157633 . + . mRNA SPAC25B8.02 ; systematic_id "SPAC25B8.02" ; colour "2" ; gene "SPAC25B8.02 ||| sds3" ; Alias "sds3" ; db_xref "SPD:10/10B11" ; GO "GO:0032221; Clr6 histone deacetylase complex I/I
GO:0016575; histone deacetylation
GO:0006342; chromatin silencing
GO:0033698; Clr6 histone deacetylase complex I/I'
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL084C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20090212" ; primary_name "sds3" ; product "Clr6 histone deacetylase complex subunit Sds3" ;
chromosome1 GeneDB mRNA 1084115 1086262 . + . mRNA SPAC1A6.07 ; db_xref "SPD:46/46B06" ; systematic_id "SPAC1A6.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0009277; cell wall (sensu Fungi)" ; gene "SPAC1A6.07" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3583128 3584805 . - . mRNA SPAC17A2.13c ; systematic_id "SPAC17A2.13c" ; colour "2" ; db_xref "SPD:24/24G12" ; Alias "rad25" ; GO "GO:0000077; DNA damage checkpoint
GO:0034613; cellular protein localization
GO:0007346; regulation of mitotic cell cycle
GO:0007095; mitotic cell cycle G2/M transition DNA damage checkpoint
GO:0004860; protein kinase inhibitor activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006270; DNA replication initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR099W and YER177W; date=19700101 ||| term=pathway, negative regulator of the Ras1-Byr2 signalling pathway, acting downstream of Ras1 and upstream of Byr2; db_xref=PMID:12242289; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "rad25" ; product "14-3-3 protein Rad25" ;
chromosome1 GeneDB mRNA 1527691 1529780 . - . mRNA SPAC57A7.08 ; systematic_id "SPAC57A7.08" ; colour "2" ; gene "pzh1 ||| SPAC57A7.08" ; Alias "pzh1" ; db_xref "SPD:25/25B01" ; obsolete_name "phz1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML016C and YDR436W and YPL179W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004722; protein serine/threonine phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0009992; cellular osmoregulation
GO:0030007; potassium ion homeostasis
GO:0043462; regulation of ATPase activity
GO:0071473; cellular response to cation stress
GO:0006883; sodium ion homeostasis
GO:0006417; regulation of translation" ; primary_name "pzh1" ; product "serine/threonine protein phosphatase Pzh1" ;
chromosome1 GeneDB mRNA 4191514 4192005 . + . mRNA SPAC25B8.18 ; db_xref "SPD:02/02E10" ; systematic_id "SPAC25B8.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR049C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0009055; electron carrier activity" ; gene "SPAC25B8.18" ; product "mitochondrial electron carrier (predicted)" ;
chromosome1 GeneDB mRNA 3310671 3312335 . - . mRNA SPAPB1E7.08c ; systematic_id "SPAPB1E7.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022857; transmembrane transporter activity" ; colour "7" ; gene "SPAPB1E7.08c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 2228994 2229985 . + . mRNA SPAC18G6.06 ; db_xref "SPD:43/43B01" ; systematic_id "SPAC18G6.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL099C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding" ; gene "SPAC18G6.06" ; product "U3 snoRNP-associated protein Utp11 (predicted)" ;
chromosome1 GeneDB mRNA 64904 66679 . - . mRNA SPAC977.16c ; systematic_id "SPAC977.16c" ; colour "2" ; gene "dak2 ||| SPAC977.16c" ; Alias "dak2" ; db_xref "SPD:49/49C03" ; GO "GO:0006091; generation of precursor metabolites and energy
GO:0019563; glycerol catabolic process
GO:0004371; glycerone kinase activity
GO:0006071; glycerol metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML070W and YFL053W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=gene expression, regulated by glucose; db_xref=PMID:20396879; date=20100622" ; primary_name "dak2" ; product "dihydroxyacetone kinase Dak2" ; EC_number "2.7.1.29" ;
chromosome1 GeneDB mRNA 4517973 4518296 . - . mRNA SPAC27D7.05c ; systematic_id "SPAC27D7.05c" ; colour "2" ; db_xref "SPD:01/01G03" ; Alias "apc14" ; synonym "omt1" ; GO "GO:0030476; fungal-type spore wall assembly
GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Mei4; db_xref=PMID:12786945; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "apc14" ; product "anaphase-promoting complex subunit Apc14" ;
chromosome1 GeneDB mRNA 5078436 5080499 . - . mRNA SPAC1006.05c ; systematic_id "SPAC1006.05c" ; colour "2" ; gene "och1 ||| SPAC1006.05c" ; note "C12N15/09,C07K14/00,C07K14/39,C12N1/00,C12N1/15,C12N1/19,C12N1/21,C12N5/10,C12N9/10,C12P21/02//(C12N15/09,C12R1:645),(C12N1/00,C12R1:645),(C12N9/10,C12R1:645), (C12P21/02,C12R1:645),C12N15/00,C12N5/00, (C12N15/00, C12R1:645)" ; Alias "och1" ; db_xref "SPD:17/17C05" ; GO "GO:0000009; alpha-1,6-mannosyltransferase activity
GO:0006491; N-glycan processing
GO:0000032; cell wall mannoprotein biosynthesis
GO:0000136; alpha-1,6-mannosyltransferase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression induced by salt stress; db_xref=PMID:12784644; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YGL038C and YJR075W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "och1" ; product "alpha-1,6-mannosyltransferase Och1" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB mRNA 3817464 3818543 . + . mRNA SPAC1F12.08 ; systematic_id "SPAC1F12.08" ; colour "7" ; gene "SPAC1F12.08" ; note "splice prediction is tentative" ; db_xref "SPD:16/16G06" ; GO "GO:0015937; coenzyme A biosynthesis
GO:0004595; pantetheine-phosphate adenylyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR277C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; product "cytidylyltransferase (predicted)" ; EC_number "2.7.7.-" ;
chromosome1 GeneDB mRNA 4037950 4041795 . - . mRNA SPAPJ698.03c ; systematic_id "SPAPJ698.03c" ; colour "2" ; gene "prp12 ||| sap130 ||| SPAPJ698.03c" ; Alias "prp12" ; synonym "sap130" ; GO "GO:0030620; U2 snRNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000245; spliceosome assembly
GO:0005686; snRNP U2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:11350031; date=20100705 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:9003295; date=20100705 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YML049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "prp12" ; product "U2 snRNP-associated protein Sap130 (predicted)" ;
chromosome1 GeneDB mRNA 2399421 2400654 . + . mRNA SPAC15F9.02 ; systematic_id "SPAC15F9.02" ; colour "2" ; gene "seh1 ||| SPAC15F9.02" ; Alias "seh1" ; db_xref "SPD:17/17E10" ; GO "; nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0031080; Nup107-160 complex
GO:0005515; protein binding
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YGL100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "seh1" ; product "nucleoporin Seh1" ;
chromosome1 GeneDB mRNA 2307538 2308745 . + . mRNA SPAC13G7.06 ; systematic_id "SPAC13G7.06" ; colour "2" ; gene "met16 ||| SPAC13G7.06" ; Alias "met16" ; db_xref "SPD:43/43C07" ; GO "GO:0000103; sulfate assimilation
GO:0004604; phosphoadenylyl-sulfate reductase (thioredoxin) activity
GO:0009086; methionine biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR167C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; primary_name "met16" ; product "phosphoadenosine phosphosulfate reductase" ; EC_number "1.8.4.8" ;
chromosome1 GeneDB mRNA 4450611 4453254 . + . mRNA SPAC9E9.08 ; systematic_id "SPAC9E9.08" ; colour "2" ; gene "rad26 ||| SPAC9E9.08" ; Alias "rad26" ; db_xref "SPD:27/27A05" ; GO "GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0005634; nucleus
GO:0007095; mitotic cell cycle G2/M transition DNA damage checkpoint
GO:0031573; intra-S DNA damage checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR499W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rad26" ; product "ATRIP, ATR checkpoint kinase regulatory subunit Rad26" ;
chromosome1 GeneDB mRNA 5206595 5208422 . + . mRNA SPAC19D5.03 ; systematic_id "SPAC19D5.03" ; colour "2" ; gene "cid1 ||| SPAC19D5.03" ; Alias "cid1" ; db_xref "SPD:21/21H05" ; GO "GO:0005737; cytoplasm
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0043631; RNA polyadenylation
GO:0071076; RNA 3' uridylation
GO:0050265; RNA uridylyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cid1" ; product "poly(A) polymerase Cid1" ; EC_number "2.7.7.52" ;
chromosome1 GeneDB mRNA 2266025 2269531 . - . mRNA SPAC4G9.08c ; systematic_id "SPAC4G9.08c" ; colour "2" ; gene "rpc2 ||| SPAC4G9.08c" ; Alias "rpc2" ; db_xref "SPD:48/48D03" ; GO "GO:0006383; transcription from RNA polymerase III promoter
GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR207C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpc2" ; product "DNA-directed RNA polymerase III complex subunit Rpc2" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB mRNA 4233038 4234760 . - . mRNA SPAC1F7.07c ; systematic_id "SPAC1F7.07c" ; colour "2" ; gene "fip1 ||| SPAC1F7.07c" ; Alias "fip1" ; db_xref "SPD:19/19A08" ; GO "GO:0005381; iron ion transporter activity
GO:0005886; plasma membrane
GO:0006827; high affinity iron ion transport
GO:0033215; iron assimilation by reduction and transport
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER145C and YBR207W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100827" ; primary_name "fip1" ; product "iron permease Fip1" ;
chromosome1 GeneDB mRNA 4737605 4738854 . - . mRNA SPAC458.04c ; systematic_id "SPAC458.04c" ; colour "2" ; db_xref "SPD:43/43G08" ; Alias "dil1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20071011 ||| term=name description, Dynein Intermediate light chain-Like; db_xref=PMID:20404563; cv=name_description; date=20100219 ||| term=warning, gene structure updated; db_xref=PMID:20404563; cv=warning; date=20100219 ||| term=orthologous to S. cerevisiae YMR299C; date=20100219 ||| term=species distribution, conserved in Fungi; date=20100219 ||| term=species distribution, conserved in Vertebrates; date=20100219 ||| term=species distribution, conserved in Eukaryotes; date=20100219 ||| term=species distribution, conserved in Metazoa; date=20100219 ||| term=modification, acetylated; residue=N_terminal; db_xref=PMID:20404563; cv=pt_mod; date=20100219 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0045143; homologous chromosome segregation
GO:0007131; reciprocal meiotic recombination
GO:0030989; dynein-driven meiotic oscillatory nuclear movement
GO:0045132; meiotic chromosome segregation
GO:0005737; cytoplasm
GO:0015630; microtubule cytoskeleton
GO:0071687; horsetail nucleus leading edge" ; primary_name "dil1" ; product "dynein intermediate light chain Dil1" ;
chromosome1 GeneDB mRNA 1899932 1901431 . + . mRNA SPAC140.03 ; systematic_id "SPAC140.03" ; colour "2" ; gene "arb1 ||| SPAC140.03" ; Alias "arb1" ; db_xref "SPD:21/21D03" ; GO "GO:0033167; ARC complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008428; ribonuclease inhibitor activity
GO:0033168; RNA interference, conversion of ds siRNA to ss siRNA
GO:0031047; RNA-mediated gene silencing
GO:0030702; chromatin silencing at centromere
GO:0051570; regulation of histone H3-K9 methylation
GO:0030148; chromatin silencing by small RNA" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070323 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "arb1" ; product "argonaute binding protein 1" ;
chromosome1 GeneDB mRNA 3643046 3645581 . + . mRNA SPAC8C9.03 ; systematic_id "SPAC8C9.03" ; colour "2" ; gene "cgs1 ||| SPAC8C9.03" ; Alias "cgs1" ; db_xref "SPD:24/24D06" ; GO "GO:0051447; negative regulation of progression through meiotic cell cycle
GO:0008603; cAMP-dependent protein kinase regulator activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human PPKAR2A and PPKAR2B ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:1657594; date=20100708 ||| term=phenotype, cell morphology, elongated cells; allele=cgs1-1; db_xref=PMID:7862141; date=20100708" ; primary_name "cgs1" ; product "cAMP-dependent protein kinase regulatory subunit Cgs1" ;
chromosome1 GeneDB mRNA 889046 892120 . - . mRNA SPAC23G3.12c ; db_xref "SPD:34/34A03" ; systematic_id "SPAC23G3.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PDZ domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL123W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; GO "GO:0051603; proteolysis involved in cellular protein catabolic process
GO:0004252; serine-type endopeptidase activity
GO:0006629; lipid metabolism" ; gene "SPAC23G3.12c" ; product "serine protease (predicted)" ;
chromosome1 GeneDB mRNA 1555026 1557115 . + . mRNA SPAC167.03c ; systematic_id "SPAC167.03c" ; colour "2" ; gene "snu66 ||| SPAC167.03c" ; Alias "snu66" ; db_xref "SPD:46/46B10" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005634; nucleus
GO:0005681; spliceosome complex
GO:0000481; maturation of 5S rRNA
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15620657; date=19700101 ||| term=orthologous to S. cerevisiae YOR308C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snu66" ; product "U4/U6 x U5 tri-snRNP complex subunit Snu66 (predicted)" ;
chromosome1 GeneDB mRNA 1038666 1039787 . - . mRNA SPAC23C4.06c ; db_xref "SPD:43/43F08" ; systematic_id "SPAC23C4.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity" ; gene "SPAC23C4.06c" ; product "methyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 1094348 1095447 . - . mRNA SPAC30D11.13 ; systematic_id "SPAC30D11.13" ; colour "2" ; gene "hus5 ||| ubc9 ||| SPAC30D11.13" ; Alias "hus5" ; db_xref "SPD:12/12B08" ; synonym "ubc9" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL064W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Hydroxy Urea Sensitive; cv=name_description; date=20090729 ||| term=phenotype, sensitive to HU; cv=phenotype; date=20090729 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:7768995; date=20100708" ; GO "GO:0007346; regulation of progression through mitotic cell cycle
GO:0005515; protein binding
GO:0000075; cell cycle checkpoint
GO:0016925; protein sumoylation
GO:0019789; SUMO ligase activity
GO:0005515; protein binding
GO:0006974; response to DNA damage stimulus
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000792; heterochromatin" ; primary_name "hus5" ; product "SUMO conjugating enzyme Hus5" ;
chromosome1 GeneDB mRNA 1746758 1749122 . - . mRNA SPAC105.03c ; db_xref "SPD:46/46E11" ; systematic_id "SPAC105.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YIR023W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC105.03c" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB mRNA 4767085 4767856 . + . mRNA SPAC1782.07 ; systematic_id "SPAC1782.07" ; colour "2" ; gene "qcr8 ||| SPAC1782.07" ; Alias "qcr8" ; db_xref "SPD:31/31F11" ; GO "GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0048039; ubiquinone binding
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0009060; aerobic respiration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL166W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "qcr8" ; product "ubiquinol-cytochrome-c reductase complex subunit 7" ; EC_number "1.10.2.2" ;
chromosome1 GeneDB mRNA 4304356 4305811 . - . mRNA SPAC25G10.05c ; systematic_id "SPAC25G10.05c" ; colour "2" ; gene "his1 ||| SPAC25G10.05c" ; Alias "his1" ; db_xref "SPD:17/17B01" ; GO "GO:0000105; histidine biosynthesis
GO:0003879; ATP phosphoribosyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER055C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "his1" ; product "ATP phosphoribosyltransferase" ; EC_number "2.4.2.17" ;
chromosome1 GeneDB mRNA 1299825 1301091 . - . mRNA SPAC1565.06c ; systematic_id "SPAC1565.06c" ; colour "2" ; gene "spg1 ||| sid3 ||| SPAC1565.06c" ; Alias "spg1" ; db_xref "SPD:11/11H01" ; synonym "sid3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9203579; date=19700101 ||| term=phenotype, septum initiation defective; cv=phenotype; db_xref=PMID:9649519; date=20091006 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9203579; date=20100705 ||| term=phenotype, multinucleate; qualifier=deletion; db_xref=PMID:9203579; date=20100705 ||| term=target of Byr4; qualifier=activated_by; db_xref=PMID:9742395; date=19700101 ||| term=target of Cdc16; qualifier=activated_by; db_xref=PMID:9742395; date=19700101 ||| term=orthologous to S. cerevisiae YML064C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=name description, Septum Initiation Defective; db_xref=PMID:9649519; cv=name_description; date=20091006" ; GO "GO:0005816; spindle pole body
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005515; protein binding
GO:0031028; septation initiation signaling
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization" ; primary_name "spg1" ; product "GTPase Spg1" ;
chromosome1 GeneDB mRNA 4772032 4773146 . - . mRNA SPAC1782.10c ; systematic_id "SPAC1782.10c" ; colour "2" ; gene "nhp2 ||| SPAC1782.10c" ; Alias "nhp2" ; db_xref "SPD:04/04C04" ; GO "GO:0002103; endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding
GO:0031118; rRNA pseudouridine synthesis
GO:0031120; snRNA pseudouridine synthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL208W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "nhp2" ; product "RNA-binding protein Nhp2 (predicted)" ;
chromosome1 GeneDB mRNA 3709206 3709804 . - . mRNA SPAC15A10.12c ; db_xref "SPD:02/02C09" ; systematic_id "SPAC15A10.12c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, X-linked spondyloepiphyseal dysplasia tarda; date=20060929 ||| term=orthologous to S. cerevisiae YEL048C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TRAPPC2L ortholog; date=20090204 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; GO "GO:0005794; Golgi apparatus
GO:0006888; ER to Golgi vesicle-mediated transport" ; colour "7" ; gene "SPAC15A10.12c" ; product "TRAPP complex subunit 2-like (predicted)" ;
chromosome1 GeneDB mRNA 275089 276661 . + . mRNA SPAC1F5.08c ; systematic_id "SPAC1F5.08c" ; colour "2" ; gene "yam8 ||| ehs1 ||| SPAC1F5.08c" ; Alias "yam8" ; db_xref "SPD:44/44G03" ; synonym "ehs1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL291C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; GO "GO:0005783; endoplasmic reticulum
GO:0009897; external side of plasma membrane
GO:0005886; plasma membrane
GO:0006874; cellular calcium ion homeostasis
GO:0070588; transmembrane calcium ion transport
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0070509; calcium ion import" ; primary_name "yam8" ; product "calcium channel regulatory subunit Yam8" ;
chromosome1 GeneDB mRNA 2255892 2256662 . + . mRNA SPAC4G9.03 ; systematic_id "SPAC4G9.03" ; colour "2" ; gene "adk1 ||| SPAC4G9.03" ; Alias "adk1" ; db_xref "SPD:42/42G09" ; GO "GO:0004017; adenylate kinase activity
GO:0006172; ADP biosynthesis
GO:0005758; mitochondrial intermembrane space
GO:0005737; cytoplasm
GO:0005524; ATP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR226W and YER170W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "adk1" ; product "adenylate kinase Adk1" ; EC_number "2.7.4.3" ;
chromosome1 GeneDB mRNA 4900517 4900977 . + . mRNA SPAC19B12.09 ; systematic_id "SPAC19B12.09" ; colour "2" ; gene "srp14 ||| SPAC19B12.09" ; Alias "srp14" ; db_xref "SPD:03/03C03" ; GO "GO:0005786; signal recognition particle (sensu Eukaryota)
GO:0006617; SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
GO:0030942; endoplasmic reticulum signal peptide binding" ; controlled_curation "term=orthologous to S. cerevisiae YDL092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=experimental tools, structure; db_xref=PMID:19390147; cv=ex_tools; date=20090426 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:19390147; date=20090426" ; primary_name "srp14" ; product "signal recognition particle subunit Srp14" ;
chromosome1 GeneDB mRNA 154807 155441 . - . mRNA SPAC5H10.05c ; db_xref "SPD:06/06E01" ; systematic_id "SPAC5H10.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=warning, possible horizontal transfer; date=20100827" ; GO "GO:0050660; FAD binding" ; colour "10" ; gene "SPAC5H10.05c" ; product "FAD binding oxidoreductase (predicted)" ;
chromosome1 GeneDB mRNA 4832879 4834570 . + . mRNA SPAC4F10.02 ; systematic_id "SPAC4F10.02" ; colour "2" ; gene "SPAC4F10.02" ; db_xref "SPD:44/44G12" ; Alias "aap1" ; GO "GO:0005737; cytoplasm
GO:0004177; aminopeptidase activity
GO:0006508; proteolysis
GO:0061077; chaperone mediated protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR113W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=misc functional group, chaperone; db_xref=PMID:20044953; date=20100331" ; primary_name "aap1" ; product "aspartyl aminopeptidase Aap1" ; EC_number "3.4.11.-" ;
chromosome1 GeneDB mRNA 235631 236015 . - . mRNA SPAC806.03c ; systematic_id "SPAC806.03c" ; colour "7" ; gene "rps2601 ||| rps26-1 ||| rps26 ||| SPAC806.03c" ; Alias "rps2601" ; db_xref "SPD:02/02E01" ; synonym "rps26-1 ||| rps26" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL189C and YER131W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; primary_name "rps2601" ; product "40S ribosomal protein S26 (predicted)" ;
chromosome1 GeneDB mRNA 3366342 3367118 . - . mRNA SPAC26A3.14c ; db_xref "SPD:01/01F05" ; systematic_id "SPAC26A3.14c" ; synonym "SPAC23A6.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL156W-B; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC26A3.14c" ; product "DUF1748 family protein" ;
chromosome1 GeneDB mRNA 3384221 3385575 . + . mRNA SPAC8E11.02c ; systematic_id "SPAC8E11.02c" ; colour "2" ; gene "rad24 ||| SPAC8E11.02c" ; Alias "rad24" ; db_xref "SPD:40/40D06" ; GO "GO:0032153; cell division site
GO:0005737; cytoplasm
GO:0051233; spindle midzone
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0004864; protein phosphatase inhibitor activity
GO:0000077; DNA damage checkpoint
GO:0031565; cytokinesis checkpoint
GO:0007126; meiosis
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0051038; negative regulation of transcription, meiotic
GO:0031031; positive regulation of septation initiation signaling
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; cv=phenotype; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:8036497; date=20101126 ||| term=orthologous to S. cerevisiae YDR099W and YER177W; date=19700101 ||| term=pathway, negative regulator of the Ras1-Byr2 signalling pathway, acting downstream of Ras1; db_xref=PMID:12242289; date=19700101 ||| term=target is Ste11; qualifier=phosphorylated_form; db_xref=PMID:11702950; date=20071120 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=genome organization, co- expressed with adjacent tandem gene; cv=genome_org; date=19700101" ; primary_name "rad24" ; product "14-3-3 protein Rad24" ;
chromosome1 GeneDB mRNA 4326488 4326793 . - . mRNA SPAC27F1.10 ; db_xref "SPD:51/51F10" ; systematic_id "SPAC27F1.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC27F1.10" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4649109 4650261 . + . mRNA SPAC1635.01 ; db_xref "SPD:11/11B01" ; systematic_id "SPAC1635.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL055C and YIL114C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005741; mitochondrial outer membrane
GO:0008308; voltage-gated ion-selective channel activity
GO:0006820; anion transport
GO:0006811; ion transport
GO:0007005; mitochondrion organization and biogenesis" ; gene "SPAC1635.01" ; product "mitochondrial outer membrane voltage-dependent anion-selective channel (predicted)" ;
chromosome1 GeneDB mRNA 978903 979374 . + . mRNA SPAC222.18 ; db_xref "PMID:18488015" ; systematic_id "SPAC222.18" ; controlled_curation "term=species distribution, no apparent S. cerevisiae ortholog; date=20080102 ||| term=SR family; date=20080513 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=rrm RNA recognition motif; date=20100630" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; gene "SPAC222.18" ; product "Srp1 family splicing factor (predicted)" ;
chromosome1 GeneDB mRNA 5163555 5166987 . - . mRNA SPAC26F1.09 ; systematic_id "SPAC26F1.09" ; colour "7" ; gene "SPAC26F1.09 ||| gyp51" ; Alias "gyp51" ; db_xref "SPD:30/30A05" ; GO "GO:0005097; Rab GTPase activator activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005798; Golgi-associated vesicle
GO:0005886; plasma membrane
GO:0005829; cytosol
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL249C and YMR192W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gyp51" ; product "GTPase activating protein Gyp51 (predicted)" ; reserved_name "gyp51" ;
chromosome1 GeneDB mRNA 4751684 4752397 . - . mRNA SPAPYUG7.04c ; systematic_id "SPAPYUG7.04c" ; colour "2" ; gene "rpb9 ||| SPAPYUG7.04c" ; Alias "rpb9" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020;" ; GO "GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0003899; DNA-directed RNA polymerase activity
GO:0006366; transcription from RNA polymerase II promoter
GO:0006283; transcription-coupled nucleotide- excision repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL070C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpb9" ; product "DNA-directed RNA polymerase II complex subunit Rpb9" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB mRNA 755080 755502 . - . mRNA SPAC22G7.11c ; systematic_id "SPAC22G7.11c" ; colour "10" ; gene "SPAC4G8.01c ||| SPAC22G7.11c" ; Alias "SPAC4G8.01c" ; db_xref "SPD:03/03D09" ; synonym "SPAC4G8.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa conidiation-specific protein 6; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC869.09 and SPAC11D3.01C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "SPAC4G8.01c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 724251 725901 . + . mRNA SPAPJ696.02 ; systematic_id "SPAPJ696.02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR016C and YFR024C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0007015; actin filament organization
GO:0006897; endocytosis" ; gene "SPAPJ696.02" ; product "actin cortical patch component Lsb4 (predicted)" ;
chromosome1 GeneDB mRNA 2762278 2763485 . + . mRNA SPAC6F6.15 ; systematic_id "SPAC6F6.15" ; colour "2" ; gene "ypt5 ||| SPAC6F6.15" ; Alias "ypt5" ; db_xref "SPD:32/32D12" ; GO "GO:0005770; late endosome
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006897; endocytosis
GO:0033157; regulation of intracellular protein transport
GO:0031338; regulation of vesicle fusion
GO:0007264; small GTPase mediated signal transduction
GO:0070314; G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Rab subfamily; date=19700101 ||| term=modification, gerenylgerenylated; cv=pt_mod; db_xref=PMID:1597466; date=19700101 ||| term=modification, carboxymethylated; cv=pt_mod; db_xref=PMID:8226998; date=19700101 ||| term=complementation, functionally complemented by mammalian rab5; db_xref=PMID:8374169; cv=complementation; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8374169; date=19700101 ||| term=orthologous to S. cerevisiae YOR089C and YKR014C and YNL093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:8374169; date=20101126" ; primary_name "ypt5" ; product "GTPase Ypt5" ;
chromosome1 GeneDB mRNA 927806 928795 . - . mRNA SPAC1687.14c ; db_xref "SPD:01/01B02" ; systematic_id "SPAC1687.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC1687.14c" ; product "EF hand family protein, unknown role" ;
chromosome1 GeneDB mRNA 2406647 2408025 . + . mRNA SPAC1B9.03c ; systematic_id "SPAC1B9.03c" ; colour "7" ; gene "SPAC6B12.01 ||| SPAC1B9.03c" ; Alias "SPAC6B12.01" ; db_xref "SPD:16/16H05" ; synonym "SPAC6B12.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR066W and YDR312W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005730; nucleolus
GO:0000027; ribosomal large subunit assembly and maintenance
GO:0019843; rRNA binding" ; primary_name "SPAC6B12.01" ; product "RNA-binding protein involved in ribosomal large subunit assembly and maintenance (predicted)" ;
chromosome1 GeneDB mRNA 3339122 3344342 . + . mRNA SPAC26A3.05 ; systematic_id "SPAC26A3.05" ; colour "7" ; gene "chc1 ||| SPAC26A3.05" ; Alias "chc1" ; db_xref "SPD:31/31B05" ; GO "GO:0030125; clathrin vesicle coat
GO:0016192; vesicle-mediated transport
GO:0005198; structural molecule activity
GO:0006897; endocytosis
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL206C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CLTC and CLTCL1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "chc1" ; product "clathrin heavy chain Chc1 (predicted)" ;
chromosome1 GeneDB mRNA 4078319 4080950 . - . mRNA SPAC19G12.16c ; systematic_id "SPAC19G12.16c" ; colour "10" ; note "4.5 copies of 53AA repeat; consensus ATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTGS" ; Alias "adg2" ; db_xref "SPD:27/27E01" ; synonym "SPAC23A1.01c ||| mug46" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=similar to N. crassa ncu05667.1; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15689498; cv=gene_ex; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=name description, Ace2 Dependent Gene; db_xref=PMID:15689498; date=20100415" ; GO "GO:0009986; cell surface" ; primary_name "adg2" ; product "conserved fungal protein Adg2" ;
chromosome1 GeneDB mRNA 4173694 4176069 . + . mRNA SPAC25B8.11 ; db_xref "SPD:27/27D11" ; systematic_id "SPAC25B8.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YIR023W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC25B8.11" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB mRNA 2536605 2537929 . - . mRNA SPAC25H1.08c ; db_xref "SPD:19/19B10" ; systematic_id "SPAC25H1.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YIR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0000027; ribosomal large subunit assembly and maintenance" ; gene "SPAC25H1.08c" ; product "ribosome biogenesis protein Sqt1 (predicted)" ;
chromosome1 GeneDB mRNA 2997453 2998157 . + . mRNA SPAC31G5.07 ; systematic_id "SPAC31G5.07" ; colour "2" ; db_xref "SPD:05/05D07" ; Alias "dni1" ; GO "GO:0005886; plasma membrane
GO:0043332; mating projection tip
GO:0070867; mating projection tip membrane
GO:0032220; plasma membrane fusion during cytogamy" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR040W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; cv=warning; date=20090507 ||| term=name description, Delayed minus- Nitrogen Induction; cv=name_description; db_xref=PMID:19627505; date=20090817 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:19627570; date=20090817 ||| term=localization dependent on Fus1; db_xref=PMID:19627570; date=20090817 ||| term=localization dependent on actin; db_xref=PMID:19627570; date=20090817 ||| term=localization dependent on lipid rafts; db_xref=PMID:19627570; date=20090817" ; primary_name "dni1" ; product "tetraspan protein Dni1" ;
chromosome1 GeneDB mRNA 1902319 1903841 . + . mRNA SPAC140.04 ; db_xref "SPD:12/12A04" ; systematic_id "SPAC140.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human c3ORF19 ortholog; date=20100901 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101" ; colour "10" ; gene "SPAC140.04" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB mRNA 2594545 2595819 . - . mRNA SPAC823.09c ; db_xref "SPD:12/12C06" ; systematic_id "SPAC823.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004067; asparaginase activity
GO:0006530; asparagine catabolic process
GO:0004298; threonine-type endopeptidase activity" ; colour "7" ; gene "SPAC823.09c" ; product "threonine aspartase (predicted)" ;
chromosome1 GeneDB mRNA 838267 841456 . + . mRNA SPAC2G11.14 ; systematic_id "SPAC2G11.14" ; colour "2" ; gene "taf111 ||| taf130 ||| SPAC2G11.14" ; Alias "taf111" ; db_xref "SPD:29/29H11" ; synonym "taf1 ||| taf130 ||| kat4" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=orthologous to S. cerevisiae YGR274C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0005669; transcription factor TFIID complex
GO:0005515; protein binding" ; primary_name "taf111" ; product "transcription factor TFIID complex subunit Taf111" ;
chromosome1 GeneDB mRNA 4917099 4917298 . + . mRNA SPAPB8E5.05 ; Alias "mfm1" ; systematic_id "SPAPB8E5.05" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed in M- type mating cells; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, M-factor precursor; cv=name_description; date=20090729 ||| term=gene expression, transcriptionally induced by Mat1-Mc; db_xref=PMID:9233811; cv=gene_ex; date=20100304" ; GO "GO:0000772; mating pheromone activity" ; gene "mfm1 ||| SPAPB8E5.05" ; primary_name "mfm1" ; product "M-factor precursor Mfm1" ;
chromosome1 GeneDB mRNA 1884422 1886345 . - . mRNA SPAPB1A10.12c ; Alias "alo1" ; systematic_id "SPAPB1A10.12c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0031307; integral to mitochondrial outer membrane
GO:0003885; D-arabinono-1,4-lactone oxidase activity
GO:0034599; cellular response to oxidative stress" ; gene "SPAPB1A10.12c ||| alo1" ; primary_name "alo1" ; product "D-arabinono-1,4-lactone oxidase (predicted)" ;
chromosome1 GeneDB mRNA 1821401 1823413 . - . mRNA SPAC1002.13c ; systematic_id "SPAC1002.13c" ; colour "2" ; gene "psu1 ||| SPAC1002.13c" ; Alias "psu1" ; db_xref "SPD:20/20A04" ; GO "GO:0009986; cell surface
GO:0009277; fungal-type cell wall
GO:0008422; beta-glucosidase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10462482; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL123W and YKR042W and YJL116C and YNL066W; date=19700101 ||| term=warning, false positive GPI anchored protein pediction; cv=warning; db_xref=PMID:12845604|PMID:17230583; date=19700101 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; primary_name "psu1" ; product "cell wall protein Psu1, beta-glucosidase (predicted)" ; EC_number "3.2.1.21" ;
chromosome1 GeneDB mRNA 5225237 5225971 . - . mRNA SPAC14C4.01c ; db_xref "SPD:08/08H02" ; systematic_id "SPAC14C4.01c" ; synonym "SPAC19D5.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; product "DUF1770 family protein" ;
chromosome1 GeneDB mRNA 1108425 1110516 . + . mRNA SPAC30D11.06c ; db_xref "SPD:25/25A08" ; systematic_id "SPAC30D11.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR051W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC30D11.06c" ; product "DUF300 family protein" ;
chromosome1 GeneDB mRNA 359767 361266 . - . mRNA SPAC630.08c ; systematic_id "SPAC630.08c" ; colour "7" ; gene "SPAC630.08c ||| erg25" ; Alias "erg25" ; db_xref "SPD:12/12D07" ; GO "GO:0000254; C-4 methylsterol oxidase activity
GO:0006696; ergosterol biosynthesis
GO:0005789; endoplasmic reticulum membrane
GO:0005506; iron ion binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "erg25" ; product "C-4 methylsterol oxidase (predicted)" ; EC_number "1.-.-.-" ; reserved_name "erg25" ;
chromosome1 GeneDB mRNA 784532 786567 . - . mRNA SPAC4G8.12c ; db_xref "SPD:36/36H12" ; systematic_id "SPAC4G8.12c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR149C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0030176; integral to endoplasmic reticulum membrane
GO:0000026; alpha-1,2-mannosyltransferase activity" ; gene "SPAC4G8.12c" ; product "alpha-1,2-mannosyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 943372 946890 . - . mRNA SPAC1687.22c ; systematic_id "SPAC1687.22c" ; colour "7" ; gene "SPAC1687.22c ||| SPAC222.02c ||| puf3" ; Alias "puf3" ; db_xref "SPD:38/38B11" ; synonym "SPAC222.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YLL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003729; mRNA binding
GO:0000288; mRNA catabolism, deadenylation- dependent decay" ; primary_name "puf3" ; product "RNA-binding protein Puf3 (predicted)" ;
chromosome1 GeneDB mRNA 550782 553530 . + . mRNA SPAC2F7.10 ; db_xref "SPD:26/26H01" ; systematic_id "SPAC2F7.10" ; colour "7" ; GO "GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0016192; vesicle-mediated transport
GO:0018345; protein palmitoylation" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-DHHC type; date=19700101 ||| term=orthologous to S. cerevisiae YDR264C and YOR034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC2F7.10" ; product "palmitoyltransferase (predicted)" ; EC_number "2.3.1.-" ;
chromosome1 GeneDB mRNA 3095075 3098883 . - . mRNA SPAC589.02c ; systematic_id "SPAC589.02c" ; colour "2" ; gene "srb9 ||| spTrap240 ||| SPAC589.02c ||| med13" ; Alias "med13" ; db_xref "SPD:49/49G12" ; synonym "spTrap240 ||| srb9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human TRAP240/ARC250 ortholog; db_xref=PMID:12738880; date=19700101 ||| term=orthologous to S. cerevisiae YDR443C; date=19700101 ||| term=gene expression, transcriptionally represses genes involved in cell surface adhesion; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter" ; primary_name "med13" ; product "mediator complex subunit Srb9" ;
chromosome1 GeneDB mRNA 4926751 4927964 . - . mRNA SPAC1B3.01c ; db_xref "SPD:13/13H08" ; systematic_id "SPAC1B3.01c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0008655; pyrimidine salvage
GO:0004845; uracil phosphoribosyltransferase activity
GO:0006223; uracil salvage" ; gene "SPAC1B3.01c" ; product "uracil phosphoribosyltransferase (predicted)" ; EC_number "2.4.2.9" ;
chromosome1 GeneDB mRNA 3959792 3962875 . + . mRNA SPAC11G7.01 ; db_xref "SPD:45/45C12" ; systematic_id "SPAC11G7.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0009986; cell surface" ; gene "SPAC11G7.01" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 56484 57736 . + . mRNA SPAC977.12 ; db_xref "SPD:51/51C10" ; systematic_id "SPAC977.12" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR155C and YLR157C and YLR158C and YLR160C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006530; asparagine catabolic process
GO:0009986; cell surface" ; gene "SPAC977.12" ; product "L-asparaginase (predicted)" ; EC_number "3.5.1.1" ;
chromosome1 GeneDB mRNA 5346202 5351847 . - . mRNA SPAC4D7.01c ; systematic_id "SPAC4D7.01c" ; colour "7" ; gene "sec71 ||| SPAP8A3.15c ||| SPAC4D7.01c ||| sec7a" ; Alias "sec71" ; db_xref "SPD:48/48H07" ; obsolete_name "sec7a" ; synonym "sec7a ||| SPAP8A3.15c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR170C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005798; Golgi-associated vesicle
GO:0005086; ARF guanyl-nucleotide exchange factor activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; primary_name "sec71" ; product "Sec7 domain protein, ARF GEF (predicted)" ;
chromosome1 GeneDB mRNA 4276923 4277916 . - . mRNA SPAC2C4.10c ; db_xref "SPD:07/07A08" ; systematic_id "SPAC2C4.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC2C4.10c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 850641 854385 . + . mRNA SPAC23G3.01 ; systematic_id "SPAC23G3.01" ; colour "2" ; gene "rpb2 ||| SPAC521.06 ||| SPAC23G3.01" ; Alias "rpb2" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:39/39B12" ; synonym "SPAC521.06" ; GO "GO:0005665; DNA-directed RNA polymerase II, core complex
GO:0000775; chromosome, pericentric region
GO:0003677; DNA binding
GO:0003899; DNA-directed RNA polymerase activity
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031048; small RNA-mediated chromatin silencing
GO:0006366; transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR151C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpb2" ; product "RNA polymerase II complex subunit Rpb2" ; EC_number "2.7.7.6" ;
chromosome1 GeneDB mRNA 604496 606849 . - . mRNA SPAC3H8.09c ; systematic_id "SPAC3H8.09c" ; colour "7" ; gene "nab3 ||| SPAC3H8.09c" ; Alias "nab3" ; db_xref "SPD:28/28E01" ; GO "GO:0008143; poly(A) binding
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0005634; nucleus
GO:0031123; RNA 3'-end processing
GO:0030847; transcription termination from Pol II promoter, RNA polymerase(A)-independent
GO:0035649; Nrd1 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YPL190C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "nab3" ; product "poly(A) binding protein Nab3 (predicted)" ; reserved_name "nab3" ;
chromosome1 GeneDB mRNA 1096876 1097262 . - . mRNA SPAC30D11.12 ; systematic_id "SPAC30D11.12" ; colour "7" ; gene "rpl3802 ||| rpl38-2 ||| rps38 ||| SPAC30D11.12" ; Alias "rpl3802" ; db_xref "SPD:02/02D10" ; synonym "rpl38-2 ||| rps38" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR325C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl3802" ; product "60S ribosomal protein L38 (predicted)" ;
chromosome1 GeneDB mRNA 5205272 5206205 . - . mRNA SPAC19D5.02c ; db_xref "SPD:07/07G02" ; systematic_id "SPAC19D5.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL055W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0006625; protein targeting to peroxisome
GO:0005777; peroxisome" ; gene "SPAC19D5.02c" ; product "peroxisomal membrane protein Pex22 (predicted)" ;
chromosome1 GeneDB mRNA 1079938 1081587 . - . mRNA SPAC1A6.05c ; db_xref "SPD:44/44H09" ; systematic_id "SPAC1A6.05c" ; colour "7" ; GO "GO:0004806; triacylglycerol lipase activity
GO:0005811; lipid particle
GO:0019433; triacylglycerol catabolism
GO:0006642; triacylglycerol mobilization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR089C and YOR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC1A6.05c" ; product "triacylglycerol lipase (predicted)" ; EC_number "3.1.1.3" ;
chromosome1 GeneDB mRNA 4401827 4403700 . + . mRNA SPAC29E6.01 ; systematic_id "SPAC29E6.01" ; colour "2" ; gene "pof11 ||| SPAC30.05 ||| SPAC29E6.01 ||| mug156" ; Alias "pof11" ; db_xref "SPD:34/34F01" ; synonym "SPAC30.05 ||| mug156" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0016567; protein ubiquitination
GO:0005515; protein binding" ; primary_name "pof11" ; product "F-box protein Pof11" ;
chromosome1 GeneDB mRNA 711215 712208 . + . mRNA SPAC1296.02 ; systematic_id "SPAC1296.02" ; colour "7" ; gene "cox4 ||| SPAC1296.02" ; Alias "cox4" ; db_xref "SPD:43/43D11" ; GO "GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration
GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0006123; mitochondrial electron transport, cytochrome c to oxygen" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL187C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cox4" ; product "cytochrome c oxidase subunit IV (predicted)" ;
chromosome1 GeneDB mRNA 2012859 2014608 . + . mRNA SPAC17H9.05 ; systematic_id "SPAC17H9.05" ; colour "7" ; gene "ebp2 ||| SPAC17H9.05" ; note "TAS Osami Niwa" ; Alias "ebp2" ; db_xref "SPD:14/14F11" ; GO "GO:0005730; nucleolus
; spindle pole body
GO:0005515; protein binding
GO:0006364; rRNA processing" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ebp2" ; product "rRNA processing protein Ebp2 (predicted)" ; reserved_name "ebp2" ;
chromosome1 GeneDB mRNA 159203 159472 . + . mRNA SPAC5H10.07 ; db_xref "SPD:01/01C01" ; systematic_id "SPAC5H10.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC5H10.07" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1281414 1282776 . - . mRNA SPAPB17E12.10c ; systematic_id "SPAPB17E12.10c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005739; mitochondrion
GO:0008168; methyltransferase activity
GO:0008650; rRNA (uridine-2'-O-)-methyltransferase activity
GO:0031167; rRNA methylation" ; colour "7" ; gene "SPAPB17E12.10c" ; product "mitochondrial 2' O-ribose methyltransferase Mrm2- like (predicted)" ;
chromosome1 GeneDB mRNA 1172351 1174155 . - . mRNA SPAC22A12.09c ; systematic_id "SPAC22A12.09c" ; colour "2" ; gene "sap114 ||| SPAC22A12.09c" ; Alias "sap114" ; db_xref "SPD:35/35C02" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0003723; RNA binding
GO:0005681; spliceosome complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL203W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sap114" ; product "splicing factor Sap114" ;
chromosome1 GeneDB mRNA 20824 21015 . + . mRNA SPAC212.05c ; systematic_id "SPAC212.05c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC212.05c" ; product "pseudogene" ; note "term=truncated by rearrangement and LTR ||| fragment similar to hypothetical protein-duplicated in telomeric region" ;
chromosome1 GeneDB mRNA 2467752 2468360 . - . mRNA SPAC19A8.09 ; db_xref "SPD:34/34D09" ; systematic_id "SPAC19A8.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER074W-A; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005789; endoplasmic reticulum membrane
GO:0000139; Golgi membrane" ; gene "SPAC19A8.09" ; product "ER to Golgi transport protein Yos1 (predicted)" ;
chromosome1 GeneDB mRNA 4265706 4266368 . - . mRNA SPAC2C4.04c ; db_xref "SPD:02/02G03" ; systematic_id "SPAC2C4.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human c2orf26 ortholog; date=20100718" ; colour "10" ; gene "SPAC2C4.04c" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB mRNA 841471 842624 . - . mRNA SPAC2G11.15c ; systematic_id "SPAC2G11.15c" ; colour "2" ; gene "SPAC2G11.15c ||| SPAC521.01c ||| tgs1" ; Alias "tgs1" ; db_xref "SPD:12/12G08" ; synonym "SPAC521.01c" ; controlled_curation "term=orthologous to S. cerevisiae YPL157W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005730; nucleolus
GO:0008990; rRNA (guanine-N2-)-methyltransferase activity
GO:0006387; snRNA capping
GO:0031167; rRNA methylation" ; primary_name "tgs1" ; product "RNA methyltransferase Tgs1 (predicted)" ;
chromosome1 GeneDB mRNA 4491952 4496540 . - . mRNA SPAC17C9.03 ; systematic_id "SPAC17C9.03" ; colour "2" ; gene "tif471 ||| SPAC17C9.03" ; Alias "tif471" ; db_xref "SPD:39/39E03" ; GO "GO:0005515; protein binding
GO:0006413; translational initiation
GO:0005198; structural molecule activity
GO:0042273; ribosomal large subunit biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL049C and YGR162W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tif471" ; product "translation initiation factor eIF4G" ;
chromosome1 GeneDB mRNA 2540843 2542495 . - . mRNA SPAC4A8.03c ; systematic_id "SPAC4A8.03c" ; colour "2" ; gene "ptc4 ||| SPAC4A8.03c" ; Alias "ptc4" ; db_xref "SPD:18/18B10" ; GO "GO:0000329; vacuolar membrane
GO:0004722; protein phosphatase type 2C activity
GO:0006470; protein amino acid dephosphorylation
GO:0032889; regulation of vacuole fusion, non- autophagic
GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10436019; date=19700101 ||| term=orthologous to S. cerevisiae YCR079W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=phenotype, cell morphology, small cells; qualifier=deletion|in_minimal_media; db_xref=PMID:7859738; date=20101126 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:17085965; date=20101126" ; primary_name "ptc4" ; product "protein phosphatase 2C Ptc4" ; EC_number "3.1.3.16" ;
chromosome1 GeneDB mRNA 3470574 3474972 . - . mRNA SPAC328.01c ; systematic_id "SPAC328.01c" ; colour "7" ; gene "SPAC3A11.01 ||| SPAC328.01c" ; Alias "SPAC3A11.01" ; db_xref "SPD:39/39C09" ; synonym "SPAC3A11.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=orthologous to S. cerevisiae YDR335W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006611; protein export from nucleus
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0008565; protein transporter activity" ; primary_name "SPAC3A11.01" ; product "karyopherin (predicted)" ;
chromosome1 GeneDB mRNA 101715 103594 . - . mRNA SPAC1F8.07c ; db_xref "SPD:45/45G12" ; systematic_id "SPAC1F8.07c" ; colour "7" ; GO "GO:0004737; pyruvate decarboxylase activity
GO:0009063; amino acid catabolic process
GO:0044237; cellular metabolic process
GO:0006091; generation of precursor metabolites and energy
GO:0008152; metabolic process
GO:0044238; primary metabolic process
GO:0006090; pyruvate metabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=warning, gene structure updated; db_xref=PMID:16823372; date=20090202" ; gene "SPAC1F8.07c" ; product "pyruvate decarboxylase (predicted)" ; EC_number "4.1.1.1" ;
chromosome1 GeneDB mRNA 3313437 3315900 . + . mRNA SPAPB1E7.09 ; systematic_id "SPAPB1E7.09" ; colour "2" ; gene "ogm2 ||| SPAPB1E7.09 ||| oma2" ; Alias "ogm2" ; synonym "oma2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, O-glycoside mannosyltransferase; cv=name_description; date=20060420 ||| term=PMT family; date=19700101 ||| term=PMT2 subfamily; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15809069; date=19700101 ||| term=orthologous to S. cerevisiae YOR321W and YGR199W and YAL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0031502; dolichyl-phosphate-mannose-protein mannosyltransferase complex
GO:0012505; endomembrane system
GO:0005789; endoplasmic reticulum membrane
GO:0031965; nuclear membrane
GO:0004169; dolichyl-phosphate-mannose-protein mannosyltransferase activity
GO:0046982; protein heterodimerization activity
GO:0035269; protein amino acid O-linked mannosylation" ; primary_name "ogm2" ; product "protein O-mannosyltransferase Ogm2" ; EC_number "2.4.1.109" ;
chromosome1 GeneDB mRNA 4782047 4782273 . - . mRNA SPAC11H11.05c ; systematic_id "SPAC11H11.05c" ; colour "2" ; gene "fta6 ||| SPAC11H11.05c ||| sma6" ; Alias "fta6" ; db_xref "SPD:01/01A12" ; synonym "sma6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; kinetochore" ; primary_name "fta6" ; product "Sim4 and Mal2 associated (4 and 2 associated) protein 6" ;
chromosome1 GeneDB mRNA 5281940 5285792 . - . mRNA SPAC11E3.02c ; db_xref "SPD:39/39C07" ; systematic_id "SPAC11E3.02c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR296W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC11E3.02c" ; product "C2 domain protein" ;
chromosome1 GeneDB mRNA 3069322 3071102 . - . mRNA SPAC24C9.12c ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00310; ||| KEGG:MAP00460; ||| KEGG:MAP00670; ||| KEGG:MAP00680; ||| SPD:21/21G01" ; systematic_id "SPAC24C9.12c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR058C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; GO "GO:0006544; glycine metabolism
GO:0006563; L-serine metabolism
GO:0006730; one-carbon compound metabolism
GO:0004372; glycine hydroxymethyltransferase activity
GO:0005737; cytoplasm" ; gene "SPAC24C9.12c" ; product "glycine hydroxymethyltransferase (predicted)" ; EC_number "2.1.2.1" ;
chromosome1 GeneDB mRNA 3912664 3914697 . + . mRNA SPAC323.04 ; db_xref "SPD:36/36A06" ; systematic_id "SPAC323.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDR061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; GO "GO:0005524; ATP binding
GO:0016020; membrane
GO:0005739; mitochondrion
GO:0016887; ATPase activity" ; gene "SPAC323.04" ; product "mitochondrial ATPase (predicted)" ;
chromosome1 GeneDB mRNA 4917555 4918991 . - . mRNA SPAPB8E5.06c ; systematic_id "SPAPB8E5.06c" ; colour "2" ; gene "rpl302 ||| rpl3-2 ||| rpl3-b ||| SPAPB8E5.06c" ; Alias "rpl302" ; synonym "rpl3-2 ||| rpl3-b" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl302" ; product "60S ribosomal protein L3" ;
chromosome1 GeneDB mRNA 369831 374217 . - . mRNA SPAC630.13c ; systematic_id "SPAC630.13c" ; colour "2" ; gene "tsc2 ||| SPAC630.13c" ; db_xref "SPD:48/48F09" ; Alias "tsc2" ; GO "GO:0033596; TSC1-TSC2 complex
GO:0005096; GTPase activator activity
GO:0005515; protein binding
GO:0010963; regulation of L-arginine import
GO:0010963; regulation of L-arginine import
GO:0031929; TOR signaling pathway
GO:0010958; regulation of amino acid import
GO:0034613; cellular protein localization
GO:0006995; cellular response to nitrogen starvation
GO:0033157; regulation of intracellular protein transport
GO:0043087; regulation of GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=disease associated, tumor suppressor syndrome, tuberous sclereosis; date=19700101 ||| term=human TSC2 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC18B11.11; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=phenotype, conjugation defects; cv=phenotype; qualifier=deletion; db_xref=PMID:12136010; date=20090426 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "tsc2" ; product "tuberin" ;
chromosome1 GeneDB mRNA 1613164 1614212 . + . mRNA SPAP27G11.03 ; systematic_id "SPAP27G11.03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR215C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=human D123 ortholog; date=20100222" ; colour "2" ; GO "GO:0006417; regulation of translation
GO:0005737; cytoplasm
GO:0007346; regulation of progression through mitotic cell cycle
GO:0007127; meiosis I
GO:0007126; ascospore formation" ; gene "SPAP27G11.03" ; product "D123 family protein" ;
chromosome1 GeneDB mRNA 5049232 5052370 . - . mRNA SPAC22E12.16c ; systematic_id "SPAC22E12.16c" ; colour "2" ; gene "pik1 ||| SPAC22E12.16c" ; Alias "pik1" ; db_xref "SPD:29/29F03" ; GO "GO:0005794; Golgi apparatus
GO:0005634; nucleus
GO:0004430; 1-phosphatidylinositol 4-kinase activity
GO:0005515; protein binding
GO:0006661; phosphatidylinositol biosynthetic process
GO:0046854; phosphoinositide phosphorylation
GO:0034613; cellular protein localization
GO:0007165; signal transduction" ; controlled_curation "term=orthologous to S. cerevisiae YNL267W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "pik1" ; product "1-phosphatidylinositol 4-kinase Pik1" ; EC_number "2.7.1.67" ;
chromosome1 GeneDB mRNA 3467984 3470188 . - . mRNA SPAC3A11.02 ; systematic_id "SPAC3A11.02" ; colour "2" ; gene "cps3 ||| SPAC3A11.02 ||| mug188" ; Alias "cps3" ; db_xref "SPD:36/36E10" ; obsolete_name "scp3" ; synonym "mug188" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=phenotype, sensitive to spindle poison (isopropyl N-3-chlorophenyl carbamate); db_xref=PMID:7857672; cv=phenotype; date=19700101 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:7857672; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YPL054W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; GO "GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0007346; regulation of progression through mitotic cell cycle" ; primary_name "cps3" ; product "zinc finger protein Cps3" ;
chromosome1 GeneDB mRNA 5449717 5451560 . + . mRNA SPAC1039.02 ; db_xref "SPD:36/36E06" ; systematic_id "SPAC1039.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR202W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC1039.02" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome1 GeneDB mRNA 1238896 1240185 . + . mRNA SPAC10F6.16 ; systematic_id "SPAC10F6.16" ; colour "7" ; gene "SPAC10F6.16 ||| mug134" ; Alias "mug134" ; db_xref "SPD:05/05D01" ; synonym "igo1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR132W-A and YNL157W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000932; cytoplasmic mRNA processing body
GO:0048255; mRNA stabilization
GO:0070314; G1 to G0 transition" ; primary_name "mug134" ; product "mRNA stability protein Igo1 (predicted)" ;
chromosome1 GeneDB mRNA 2578956 2579514 . - . mRNA SPAC4A8.15c ; systematic_id "SPAC4A8.15c" ; colour "2" ; gene "cdc3 ||| SPAC4A8.15c" ; Alias "cdc3" ; db_xref "SPD:41/41C06" ; GO "GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0030041; actin filament polymerization
GO:0005085; guanyl-nucleotide exchange factor activity
GO:0003785; actin monomer binding
GO:0030479; actin cortical patch
GO:0032220; plasma membrane fusion during cytogamy
GO:0005937; mating projection
GO:0071519; actin filament bundle assembly involved in actomyosin contractile ring formation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated dumbbell; db_xref=PMID:8207058; date=20100729 ||| term=orthologous to S. cerevisiae YOR122C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cdc3" ; product "profilin" ;
chromosome1 GeneDB mRNA 3066462 3069156 . + . mRNA SPAC24C9.11 ; db_xref "SPD:28/28H02" ; systematic_id "SPAC24C9.11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR336C; date=19700101 ||| term=human NOM1 ortholog; date=20071202 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, acute myeloid leukemia; date=20090607 ||| term=disease associated, cancer; date=20090607 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005730; nucleolus
GO:0042274; ribosome small subunit biogenesis" ; gene "SPAC24C9.11" ; product "ribosome small subunit biogenesis protein (predicted)" ;
chromosome1 GeneDB mRNA 4496759 4497789 . + . mRNA SPAC17C9.02c ; systematic_id "SPAC17C9.02c" ; colour "2" ; gene "lys7 ||| SPAC17C9.02c" ; Alias "lys7" ; db_xref "SPD:10/10E11" ; GO "GO:0005737; cytoplasm
GO:0009085; lysine biosynthesis
GO:0008897; phosphopantetheinyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL154C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lys7" ; product "alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7" ;
chromosome1 GeneDB mRNA 2604098 2605212 . - . mRNA SPAC823.13c ; db_xref "SPD:13/13D09" ; systematic_id "SPAC823.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR393W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0007007; inner mitochondrial membrane organization and biogenesis
GO:0005743; mitochondrial inner membrane" ; gene "SPAC823.13c" ; product "mitochondrial inner membrane protein (predicted)" ;
chromosome1 GeneDB mRNA 1333485 1335521 . - . mRNA SPAC6F12.11c ; systematic_id "SPAC6F12.11c" ; colour "2" ; gene "sfc1 ||| SPAC6F12.11c" ; Alias "sfc1" ; db_xref "SPD:23/23H02" ; GO "GO:0000127; transcription factor TFIIIC complex
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003709; RNA polymerase III transcription factor activity
GO:0043035; chromatin insulator sequence binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR123C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "sfc1" ; product "transcription factor TFIIIC complex A box associated subunit Sfc1" ;
chromosome1 GeneDB mRNA 368291 369840 . + . mRNA SPAC630.12 ; db_xref "SPD:20/20C08" ; systematic_id "SPAC630.12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR182W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0016021; integral to membrane
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0007165; signal transduction" ; gene "SPAC630.12" ; product "ER lipid phosphatase (predicted)" ;
chromosome1 GeneDB mRNA 4323623 4325212 . - . mRNA SPAC27F1.05c ; db_xref "SPD:23/23E01" ; systematic_id "SPAC27F1.05c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0030170; pyridoxal phosphate binding
GO:0008483; transaminase activity
GO:0033554; cellular response to stress" ; gene "SPAC27F1.05c" ; product "aminotransferase class-III, unknown specificty" ; EC_number "2.6.1.19" ;
chromosome1 GeneDB mRNA 1376587 1377072 . + . mRNA SPAC57A10.06 ; systematic_id "SPAC57A10.06" ; colour "8" ; gene "SPAC57A10.06 ||| mug15" ; db_xref "SPD:04/04E07" ; Alias "mug15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug15" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4056794 4058798 . + . mRNA SPAC19G12.08 ; systematic_id "SPAC19G12.08" ; colour "2" ; gene "SPAC19G12.08" ; Alias "scs7" ; db_xref "SPD:20/20F03" ; GO "GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane
GO:0000170; sphingosine hydroxylase activity
GO:0006675; mannose inositol phosphoceramide metabolic process" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR272C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "scs7" ; product "sphingosine hydroxylase Scs7" ;
chromosome1 GeneDB mRNA 5124780 5125232 . + . mRNA SPAC29A4.12c ; systematic_id "SPAC29A4.12c" ; colour "8" ; gene "SPAC29A4.12c ||| mug108" ; db_xref "SPD:42/42B05" ; Alias "mug108" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug108" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3413139 3414631 . - . mRNA SPAC3H5.11 ; db_xref "SPD:50/50F03" ; systematic_id "SPAC3H5.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL041W and YJR049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0003951; NAD+ kinase activity
GO:0019674; NAD metabolism" ; gene "SPAC3H5.11" ; product "NAD/NADH kinase (predicted)" ;
chromosome1 GeneDB mRNA 5243953 5245903 . + . mRNA SPAC14C4.09 ; systematic_id "SPAC14C4.09" ; colour "2" ; gene "agn1 ||| SPAC14C4.09" ; db_xref "SPD:22/22B03" ; Alias "agn1" ; GO "GO:0043188; cell septum edging
GO:0009986; cell surface
GO:0005576; extracellular region
GO:0051118; glucan endo-1,3-alpha-glucosidase activity
GO:0030995; cell septum edging catabolism
GO:0044247; cellular polysaccharide catabolic process
GO:0046379; extracellular polysaccharide metabolic process
GO:0009313; oligosaccharide catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15194814; cv=gene_ex; date=20060818 ||| term=subunit composition, monomeric; cv=subunit_composition; db_xref=PMID:15194814; date=20060818 ||| term=gene expression, promoter contains UAS; qualifier=required; db_xref=PMID:16678171; cv=gene_ex; date=20060818 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, gene structure updated; db_xref=PMID:15194814; cv=warning; date=20100123 ||| term=phenotype, colony morphology, clumped cells; db_xref=PMID:15194814; date=20100917" ; primary_name "agn1" ; product "glucan endo-1,3-alpha-glucosidase Agn1" ; EC_number "3.2.1.59" ;
chromosome1 GeneDB mRNA 140535 141580 . - . mRNA SPAC11D3.16c ; db_xref "SPD:02/02H10" ; systematic_id "SPAC11D3.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; GO "GO:0034599; cellular response to oxidative stress" ; colour "8" ; gene "SPAC11D3.16c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4185295 4186434 . + . mRNA SPAC25B8.14 ; systematic_id "SPAC25B8.14" ; colour "2" ; gene "mal2 ||| SPAC25B8.14" ; Alias "mal2" ; db_xref "SPD:43/43E11" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000779; condensed chromosome, pericentric region
GO:0000939; inner kinetochore of condensed chromosome
GO:0005634; nucleus
; protein binding
GO:0030702; chromatin silencing at centromere
GO:0000022; mitotic spindle elongation
GO:0034613; cellular protein localization
GO:0000070; mitotic sister chromatid segregation
GO:0000819; sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12242294; date=20070216 ||| term=orthologous to S. cerevisiae YDR318W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CENP-O ortholog; date=20100727 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; db_xref=PMID:8887647; date=20100727" ; primary_name "mal2" ; product "kinetochore protein, CENP-O ortholog Mal2" ;
chromosome1 GeneDB mRNA 424006 425223 . - . mRNA SPAC13C5.01c ; systematic_id "SPAC13C5.01c" ; colour "7" ; gene "SPAC13C5.01c ||| SPAC31A2.17c" ; db_xref "SPD:09/09A11" ; synonym "SPAC31A2.17c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; product "20S proteasome component alpha 3 (predicted)" ; EC_number "3.4.25.1" ;
chromosome1 GeneDB mRNA 950905 952943 . - . mRNA SPAC222.05c ; systematic_id "SPAC222.05c" ; colour "7" ; gene "SPAC222.05c ||| mss1" ; Alias "mss1" ; db_xref "SPD:45/45A04" ; GO "GO:0006400; tRNA modification
GO:0005743; mitochondrial inner membrane
GO:0005525; GTP binding
GO:0003924; GTPase
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mss1" ; product "mitochondrial GTPase (predicted)" ;
chromosome1 GeneDB mRNA 2722735 2723660 . + . mRNA SPAPB2B4.06 ; systematic_id "SPAPB2B4.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL095W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAPB2B4.06" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 95961 96966 . + . mRNA SPAC1F8.05 ; systematic_id "SPAC1F8.05" ; colour "8" ; db_xref "SPD:05/05F01" ; Alias "isp3" ; synonym "meu4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; GO "GO:0031142; induction of conjugation upon nitrogen starvation
GO:0007126; meiosis
GO:0007126; meiosis" ; primary_name "isp3" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4243757 4244694 . + . mRNA SPAC1F7.10 ; db_xref "SPD:08/08E04" ; systematic_id "SPAC1F7.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR030C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPAC1F7.10" ; product "hydantoin racemase family (predicted)" ;
chromosome1 GeneDB mRNA 1816497 1818533 . + . mRNA SPAC1002.11 ; systematic_id "SPAC1002.11" ; colour "7" ; gene "gaa1 ||| SPAC1002.11" ; Alias "gaa1" ; db_xref "SPD:35/35H11" ; GO "GO:0042765; GPI-anchor transamidase complex
GO:0003923; GPI-anchor transamidase activity
GO:0016255; attachment of GPI anchor to protein" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gaa1" ; product "GPI-anchor transamidase complex subunit Gaa1 (predicted)" ;
chromosome1 GeneDB mRNA 2019500 2020602 . - . mRNA SPAC17H9.09c ; systematic_id "SPAC17H9.09c" ; colour "2" ; gene "ras1 ||| ste5 ||| SPAC17H9.09c" ; Alias "ras1" ; db_xref "SPD:43/43A06" ; synonym "ste5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, stubby cells; qualifier=deletion; cv=phenotype; db_xref=PMID:7923372; date=20090217 ||| term=target is Scd1; qualifier=activates; date=19700101 ||| term=target is Byr2; qualifier=activates; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=modification, palmitoylated; qualifier=predicted; cv=pt_mod; date=19700101 ||| term=orthologous to S. cerevisiae YOR101W and YNL098C; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=pathway, Ras1-Scd; cv=pathway; date=20080718 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human HRAS and KRAS and NRAS ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=phenotype, sterile; db_xref=PMID:3481018; date=20101013 ||| term=name description, STErile; db_xref=PMID:3481018; date=20101013" ; GO "GO:0071521; Cdc42 GTPase complex
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0000751; cell cycle arrest in response to pheromone
GO:0033205; cell cycle cytokinesis
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0006995; cellular response to nitrogen starvation
GO:0007163; establishment and/or maintenance of cell polarity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0031137; regulation of conjugation with cellular fusion
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0032488; Cdc42 protein signal tansduction
GO:0007051; spindle organization and biogenesis
GO:0030437; sporulation (sensu Fungi)" ; primary_name "ras1" ; product "GTPase Ras1" ;
chromosome1 GeneDB mRNA 2105516 2110123 . + . mRNA SPAC631.02 ; db_xref "SPD:39/39F08" ; systematic_id "SPAC631.02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=orthologous to S. cerevisiae YLR399C and YDL070W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human BRD3 and BRD4 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; GO "GO:0006338; chromatin remodeling
GO:0005634; nucleus
GO:0000790; nuclear chromatin" ; gene "SPAC631.02" ; product "bromodomain protein (predicted)" ;
chromosome1 GeneDB mRNA 1534588 1538601 . - . mRNA SPAC57A7.05 ; db_xref "SPD:39/39D11" ; systematic_id "SPAC57A7.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL231C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPAC57A7.05" ; product "conserved protein" ;
chromosome1 GeneDB mRNA 5502575 5503186 . + . mRNA SPAC869.06c ; db_xref "SPD:06/06H01" ; systematic_id "SPAC869.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0043169; cation binding" ; gene "SPAC869.06c" ; product "HHE domain cation binding protein (predicted)" ;
chromosome1 GeneDB mRNA 1517241 1521420 . - . mRNA SPAC57A7.11 ; systematic_id "SPAC57A7.11" ; colour "2" ; gene "mip1 ||| SPAC57A7.11" ; Alias "mip1" ; db_xref "SPD:39/39D06" ; GO "GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0031137; regulation of conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion
GO:0005515; protein binding
GO:0031931; TORC 1 complex
GO:0031931; TORC 1 complex
GO:0031929; TOR signaling pathway" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR186C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10648609; date=20071228 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mip1" ; product "WD repeat protein, Raptor homolog Mip1" ;
chromosome1 GeneDB mRNA 88367 90259 . - . mRNA SPAC1F8.03c ; systematic_id "SPAC1F8.03c" ; colour "2" ; gene "str3 ||| SPAC1F8.03c" ; Alias "str3" ; db_xref "SPD:26/26E04" ; GO "GO:0015343; siderophore-iron transporter activity
GO:0015892; siderophore-iron transport
GO:0006879; iron ion homeostasis
GO:0033214; iron assimilation by chelation and transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL040C and YHL047C and YOL158C and YKR106W and YCL073C and YEL065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "str3" ; product "siderophore-iron transporter Str3" ;
chromosome1 GeneDB mRNA 1438375 1438976 . + . mRNA SPAC3A12.10 ; systematic_id "SPAC3A12.10" ; colour "7" ; gene "rpl2001 ||| rpl20-1 ||| rpl20 ||| yl17b ||| rpl18a-2 ||| SPAC3A12.10" ; Alias "rpl2001" ; db_xref "SPD:05/05D03" ; synonym "rpl20-1 ||| rpl20 ||| yl17b ||| rpl18a-2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR242C and YOR312C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl2001" ; product "60S ribosomal protein L20a (predicted)" ;
chromosome1 GeneDB mRNA 3181542 3183290 . - . mRNA SPAC3G9.01 ; systematic_id "SPAC3G9.01" ; colour "8" ; gene "SPAC3G9.01 ||| nsk1" ; db_xref "SPD:44/44D09" ; Alias "nsk1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=species distribution, sequence orphan; date=20090303" ; primary_name "nsk1" ; product "Clp1-interacting protein Nsk1" ; reserved_name "nsk1" ;
chromosome1 GeneDB mRNA 2128463 2131713 . + . mRNA SPAC20H4.10 ; systematic_id "SPAC20H4.10" ; colour "7" ; gene "ufd2 ||| SPAC20H4.10" ; note "possibly overpredicted at the N-terminal exon" ; Alias "ufd2" ; db_xref "SPD:49/49F10" ; obsolete_name "SPAC145.04" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=U-box domain; date=19700101 ||| term=orthologous to S. cerevisiae YDL190C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, ubiquitin fusion degradation protein; cv=name_description; date=20091118" ; primary_name "ufd2" ; product "ubiquitin-protein ligase E4 (predicted)" ;
chromosome1 GeneDB mRNA 2531276 2532815 . + . mRNA SPAC25H1.06 ; systematic_id "SPAC25H1.06" ; colour "2" ; gene "SPAC25H1.06" ; db_xref "SPD:22/22B11" ; Alias "pcf3" ; GO "GO:0033186; CAF-1 complex
GO:0000790; nuclear chromatin
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005634; nucleus
GO:0006335; DNA replication-dependent nucleosome assembly
GO:0070829; heterochromatin maintenance
GO:0035067; negative regulation of histone acetylation
GO:0090053; positive regulation of chromatin silencing at centromere
GO:0090055; positive regulation of chromatin silencing at mating-type cassette
GO:0051574; positive regulation of histone H3-K9 methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR195C; db_xref=PMID:18761674; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CAF1p48 ortholog; db_xref=PMID:18761674; date=20090723 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18761674; date=20090723 ||| term=misc functional group, histone chaperone; db_xref=PMID:18761674; cv=m_f_g; date=20090723 ||| term=name description, Pombe CAF-1 First subunit; db_xref=PMID:18761674; date=20090723 ||| term=misc, destabilized in the absence of Pcf1; db_xref=PMID:18761674; date=20090723" ; primary_name "pcf3" ; product "CAF assembly factor (CAF-1) complex subunit C, Pcf3" ;
chromosome1 GeneDB mRNA 5188171 5188566 . + . mRNA SPAPJ691.02 ; systematic_id "SPAPJ691.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, DiGeorge syndrome; date=20060725 ||| term=orthologous to S. cerevisiae YBL049W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0008270; zinc ion binding" ; gene "SPAPJ691.02" ; product "yippee-like protein" ;
chromosome1 GeneDB mRNA 306801 308011 . - . mRNA SPAC18B11.06 ; db_xref "SPD:14/14C02" ; systematic_id "SPAC18B11.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER127W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0006364; 35S primary transcript processing
GO:0005732; small nucleolar ribonucleoprotein complex" ; gene "SPAC18B11.06" ; product "U3 snoRNP-associated protein Lcp5 (predicted)" ;
chromosome1 GeneDB mRNA 1944150 1945368 . + . mRNA SPAC3H1.07 ; systematic_id "SPAC3H1.07" ; colour "2" ; gene "SPAC3H1.07" ; Alias "aru1" ; db_xref "SPD:13/13H04" ; synonym "car3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, CAtabolism of Arginine, after cerevisiae; cv=name_description; date=20091016 ||| term=disease associated, argininemia; date=20091016 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=experimental tools, deletion solves arginine-conversion problem; db_xref=PMID:20460254; date=20100601" ; GO "GO:0019547; arginine catabolic process to ornithine
GO:0004053; arginase activity
GO:0000050; urea cycle" ; primary_name "aru1" ; product "arginase Aru1" ; EC_number "3.5.3.1" ;
chromosome1 GeneDB mRNA 490016 492011 . + . mRNA SPAC24H6.01c ; db_xref "SPD:51/51E04" ; systematic_id "SPAC24H6.01c" ; synonym "SPAPB21F2.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL084C and YPL189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005886; plasma membrane
GO:0008374; O-acyltransferase activity
GO:0006506; GPI anchor biosynthesis
GO:0015793; glycerol transport" ; product "membrane bound O-acyltransferase, MBOAT (predicted)" ;
chromosome1 GeneDB mRNA 3852931 3853536 . + . mRNA SPAC4H3.13 ; db_xref "SPD:02/02B02" ; systematic_id "SPAC4H3.13" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR095W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000408; EKC/KEOPS protein complex
GO:0000790; nuclear chromatin
; nuclear chromatin
GO:0031490; chromatin DNA binding
GO:0030528; transcription regulator activity
GO:0031382; mating projection biogenesis
GO:0007329; positive regulation of transcription from RNA polymerase II promoter by pheromones
GO:0032569; specific transcription from RNA polymerase II promoter" ; gene "SPAC4H3.13" ; product "transcriptional regulator Pcc1 (predicted)" ;
chromosome1 GeneDB mRNA 613480 617221 . - . mRNA SPAC1F3.02c ; systematic_id "SPAC1F3.02c" ; colour "2" ; gene "mkh1 ||| SPAC1F3.02c" ; Alias "mkh1" ; db_xref "SPD:30/30D07" ; GO "GO:0000165; MAPKKK cascade
GO:0031505; cell wall organization and biogenesis
GO:0004709; MAP kinase kinase kinase activity
GO:0006970; response to osmotic stress
GO:0034605; cellular response to heat
GO:0005515; protein binding
GO:0005524; ATP binding
GO:0006468; protein amino acid phosphorylation
GO:0008360; regulation of cell shape
GO:0006883; sodium ion homeostasis
GO:0033205; cell cycle cytokinesis
GO:0005737; cytoplasm
GO:0030428; cell septum
GO:0030968; unfolded protein response
GO:0050850; positive regulation of calcium- mediated signaling
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9199286; date=19700101 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:9199286; date=20100712 ||| term=phenotype, cell morphology, round cells; qualifier=deletion; db_xref=PMID:9199286; date=20100712 ||| term=pathway, Mkh1-Pek1-Spm1 MAP kinase; cv=pathway; db_xref=PMID:10365961; date=19700101 ||| term=orthologous to S. cerevisiae YJL095W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Shk2; qualifier=phosphorylated_by; db_xref=PMID:11453249; date=20100826" ; primary_name "mkh1" ; product "MEK kinase (MEKK) Mkh1" ;
chromosome1 GeneDB mRNA 4411564 4413996 . - . mRNA SPAC29E6.06c ; systematic_id "SPAC29E6.06c" ; colour "7" ; gene "SPAC30.10c ||| SPAC29E6.06c" ; Alias "SPAC30.10c" ; db_xref "KEGG:MAP00272; ||| KEGG:MAP00970; ||| SPD:28/28B05" ; synonym "SPAC30.10c" ; GO "GO:0004817; cysteine-tRNA ligase activity
GO:0006423; cysteinyl-tRNA aminoacylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL247W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CARS ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "SPAC30.10c" ; product "cytoplasmic cysteine-tRNA ligase Crs1 (predicted)" ; EC_number "6.1.1.16" ;
chromosome1 GeneDB mRNA 504857 505626 . + . mRNA SPAC227.04 ; db_xref "SPD:05/05D12" ; systematic_id "SPAC227.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006914; autophagy
GO:0007034; vacuolar transport" ; gene "SPAC227.04" ; product "autophagy C terminal domain family protein (predicted)" ; note "related to Apg3, but missing N-terminal domain" ;
chromosome1 GeneDB mRNA 2859456 2860783 . + . mRNA SPAC8F11.04 ; db_xref "SPD:19/19H12" ; systematic_id "SPAC8F11.04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR052W and YKR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005730; nucleolus
GO:0005634; nucleus" ; gene "SPAC8F11.04" ; product "U3 snoRNP-associated protein Cic1/Utp30 family (predicted)" ;
chromosome1 GeneDB mRNA 4996030 4997222 . - . mRNA SPAC1952.15c ; systematic_id "SPAC1952.15c" ; colour "2" ; gene "rec24 ||| mug6 ||| SPAC1952.15c" ; Alias "rec24" ; db_xref "SPD:44/44A04" ; synonym "mug6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination" ; primary_name "rec24" ; product "meiotic recombination protein Rec24" ;
chromosome1 GeneDB mRNA 3732443 3733240 . + . mRNA SPAC15E1.10 ; db_xref "SPD:10/10A12" ; systematic_id "SPAC15E1.10" ; synonym "SPAP7G5.01" ; GO "GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0004866; endopeptidase inhibitor activity
GO:0070628; proteasome binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR076C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; product "PI31 proteasome inhibitor (predicted)" ;
chromosome1 GeneDB mRNA 3812558 3814431 . + . mRNA SPAC1F12.05 ; db_xref "SPD:17/17G12" ; systematic_id "SPAC1F12.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0031625; ubiquitin protein ligase binding
GO:0070086; ubiquitin-dependent endocytosis
GO:0030136; clathrin-coated vesicle" ; gene "SPAC1F12.05" ; product "endocytosis regulator (predicted)" ;
chromosome1 GeneDB mRNA 1984568 1985293 . - . mRNA SPAC9G1.08c ; db_xref "SPD:43/43A04" ; systematic_id "SPAC9G1.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0004620; phospholipase activity
GO:0044242; cellular lipid catabolic process" ; gene "SPAC9G1.08c" ; product "phospholipase (predicted)" ;
chromosome1 GeneDB mRNA 3034139 3037167 . + . mRNA SPAC1786.02 ; db_xref "SPD:37/37A11" ; systematic_id "SPAC1786.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; colour "7" ; GO "GO:0004620; phospholipase activity
GO:0046475; glycerophospholipid catabolism
GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region" ; gene "SPAC1786.02" ; product "phospholipase (predicted)" ;
chromosome1 GeneDB mRNA 4310579 4312892 . + . mRNA SPAC25G10.08 ; db_xref "SPD:37/37G10" ; systematic_id "SPAC25G10.08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YOR361C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "2" ; GO "GO:0003723; RNA binding
GO:0006413; translational initiation
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0005737; cytoplasm
GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex" ; gene "SPAC25G10.08" ; product "translation initiation factor eIF3b (p84)" ;
chromosome1 GeneDB mRNA 2420450 2420894 . - . mRNA SPAC6B12.06c ; systematic_id "SPAC6B12.06c" ; colour "7" ; gene "SPAC6B12.06c" ; Alias "rrg9" ; db_xref "SPD:01/01A10" ; GO "GO:0005739; mitochondrion
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL213C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Metazoa; date=20090202 ||| term=species distribution, conserved in Eukaryotes only; date=20090202 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090905 ||| term=human NGRN ortholog; date=20100715" ; primary_name "rrg9" ; product "mitochondrial genome maintenance protein Rrg9 (predicted)" ;
chromosome1 GeneDB mRNA 2234276 2236695 . + . mRNA SPAC18G6.10 ; systematic_id "SPAC18G6.10" ; colour "2" ; gene "lem2 ||| heh1 ||| SPAC18G6.10" ; Alias "heh1" ; db_xref "SPD:46/46D11" ; synonym "lem2" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR458C and YML034W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=name description, Lap-Emerin- Man domain protein; date=20090625 ||| term=LEM domain; date=20090625 ||| term=name description, Helix- Extension-Helix domain protein; date=20090625" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0005639; integral to nuclear inner membrane
GO:0007127; meiosis I
GO:0007126; meiosis" ; primary_name "heh1" ; product "LEM domain protein Heh1/Lem2" ;
chromosome1 GeneDB mRNA 425986 427342 . + . mRNA SPAC13C5.02 ; systematic_id "SPAC13C5.02" ; colour "2" ; db_xref "SPD:22/22H03" ; obsolete_name "hgp1" ; Alias "dre4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=orthologous to S. cerevisiae YPR152C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Defect in REreplication; db_xref=PMID:15466421; cv=name_description; date=20100126" ; GO "GO:0006261; DNA replication
GO:0005634; nucleus" ; primary_name "dre4" ; product "DNA replication protein Dre4" ;
chromosome1 GeneDB mRNA 757966 761871 . - . mRNA SPAC4G8.03c ; db_xref "SPD:28/28D08" ; systematic_id "SPAC4G8.03c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YGL014W and YGL178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0003729; mRNA binding
GO:0005737; cytoplasm" ; gene "SPAC4G8.03c" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB mRNA 1351638 1353729 . - . mRNA SPAC19E9.01c ; systematic_id "SPAC19E9.01c" ; colour "2" ; gene "nup40 ||| SPAC19E9.01c" ; Alias "nup40" ; db_xref "SPD:22/22F07" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0007094; mitotic spindle checkpoint
GO:0005515; protein binding
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YMR153W and YDL088C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nup40" ; product "nucleoporin Nup40" ; reserved_name "nup40" ;
chromosome1 GeneDB mRNA 5170842 5172047 . - . mRNA SPAC26F1.07 ; db_xref "SPD:13/13G02" ; systematic_id "SPAC26F1.07" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR368W and YOR120W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0042843; D-xylose catabolism
GO:0019568; arabinose catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0047935; glucose 1-dehydrogenase (NADP+) activity" ; gene "SPAC26F1.07" ; product "glucose 1-dehydrogenase (NADP+) (predicted)" ; EC_number "1.1.1.21" ;
chromosome1 GeneDB mRNA 2872827 2874532 . - . mRNA SPACUNK4.17 ; db_xref "SPD:19/19D03" ; systematic_id "SPACUNK4.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPACUNK4.17" ; product "NAD binding dehydrogenase family protein" ;
chromosome1 GeneDB mRNA 3231423 3232976 . + . mRNA SPAC6G10.08 ; systematic_id "SPAC6G10.08" ; colour "7" ; gene "idp1 ||| SPAC6G10.08" ; Alias "idp1" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00480; ||| KEGG:MAP00720; ||| SPD:20/20A10" ; GO "GO:0006102; isocitrate metabolism
GO:0006537; glutamate biosynthetic process
GO:0006099; tricarboxylic acid cycle
GO:0004450; isocitrate dehydrogenase (NADP+) activity
GO:0005739; mitochondrion
GO:0005737; cytoplasm
GO:0006740; NADPH regeneration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL066W and YLR174W and YNL009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human IDH1 and IDH2 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "idp1" ; product "isocitrate dehydrogenase Idp1 (predicted)" ; EC_number "1.1.1.42" ;
chromosome1 GeneDB mRNA 1654080 1655830 . + . mRNA SPAC343.09 ; systematic_id "SPAC343.09" ; colour "2" ; gene "ubx3 ||| mug39 ||| SPAC343.09" ; Alias "ubx3" ; db_xref "SPD:19/19F04" ; synonym "mug39" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15120077; date=19700101 ||| term=orthologous to S. cerevisiae YBL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:15120077; date=20100708 ||| term=phenotype, cell morphology, swollen cells; qualifier=ts; db_xref=PMID:15120077; date=20100708 ||| term=target is Rum1; db_xref=PMID:15120077; date=20100823" ; GO "GO:0004869; cysteine protease inhibitor activity
GO:0005515; protein binding
GO:0043130; ubiquitin binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0030437; sporulation (sensu Fungi)
GO:0006944; cellular membrane fusion" ; primary_name "ubx3" ; product "UBX domain protein Ubx3, Cdc48 cofactor" ;
chromosome1 GeneDB mRNA 4010913 4011317 . + . mRNA SPAC27E2.12 ; db_xref "SPD:52/52E08" ; systematic_id "SPAC27E2.12" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=warning, previously annotated as dubious; date=20100606" ; colour "8" ; gene "SPAC27E2.12" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1878205 1880682 . + . mRNA SPAPB1A10.09 ; Alias "ase1" ; systematic_id "SPAPB1A10.09" ; colour "2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15647374; date=19700101 ||| term=orthologous to S. cerevisiae YOR058C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:19686868; date=20090820 ||| term=target of Klp9; qualifier=dephosphorylated_by; db_xref=PMID:19686868; date=20090820 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:19686868; date=20090820 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005881; cytoplasmic microtubule
GO:0000923; equatorial microtubule organizing center
GO:0005876; spindle microtubule
GO:0051233; spindle midzone
GO:0005816; spindle pole body
GO:0008017; microtubule binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0031565; cytokinesis checkpoint
GO:0030989; horsetail nuclear movement
GO:0001578; microtubule bundle formation
GO:0007020; microtubule nucleation
GO:0000022; mitotic spindle elongation
GO:0071775; regulation of cell cycle cytokinesis
GO:0051256; spindle midzone assembly involved in mitosis" ; gene "ase1 ||| SPAPB1A10.09" ; primary_name "ase1" ; product "antiparallel microtubule cross-linking factor Ase1" ;
chromosome1 GeneDB mRNA 3607467 3610162 . - . mRNA SPAC17G6.11c ; db_xref "SPD:26/26F06" ; systematic_id "SPAC17G6.11c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR143W and YPR159W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0016021; integral to membrane
GO:0015926; glucosidase activity
GO:0006078; 1,6-beta-glucan biosynthesis
GO:0070880; fungal-type cell wall beta-glucan biosynthetic process
GO:0030148; sphingolipid biosynthetic process" ; gene "SPAC17G6.11c" ; product "glucosidase (predicted)" ;
chromosome1 GeneDB mRNA 1276507 1278100 . + . mRNA SPAPB17E12.06 ; systematic_id "SPAPB17E12.06" ; controlled_curation "term=orthologous to S. cerevisiae YPL255W; date=20100919 ||| term=species distribution, conserved in Fungi; date=20100919 ||| term=species distribution, conserved in Fungi only; date=20100919 ||| term=species distribution, conserved in Eukaryotes; date=20100919" ; GO "GO:0030474; splindle pole body duplication
GO:0007020; microtuble nucleation" ; colour "7" ; gene "SPAPB17E12.06" ; product "Bfr1 binding protein ortholog (predicted), frameshifted" ;
chromosome1 GeneDB mRNA 4849856 4851781 . - . mRNA SPAC4F10.10c ; systematic_id "SPAC4F10.10c" ; colour "7" ; gene "mnn9 ||| SPAC4F10.10c" ; Alias "mnn9" ; db_xref "SPD:15/15A10" ; GO "GO:0000136; alpha-1,6-mannosyltransferase complex
GO:0006487; protein amino acid N-linked glycosylation
GO:0000137; Golgi cis cisterna
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL050C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mnn9" ; product "mannosyltransferase complex subunit, Anp family Mnn9 (predicted)" ;
chromosome1 GeneDB mRNA 4687388 4688831 . - . mRNA SPAC144.17c ; db_xref "SPD:20/20H02" ; systematic_id "SPAC144.17c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0004331; fructose-2,6-bisphosphate 2- phosphatase activity
GO:0006003; fructose 2,6-bisphosphate metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR345W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20082502" ; gene "SPAC144.17c" ; product "6-phosphofructo-2-kinase (predicted)" ; EC_number "3.1.3.46" ;
chromosome1 GeneDB mRNA 304435 305095 . + . mRNA SPAC18B11.08c ; db_xref "SPD:42/42C09" ; systematic_id "SPAC18B11.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR063C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; gene "SPAC18B11.08c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 2862580 2863567 . + . mRNA SPAC8F11.06 ; systematic_id "SPAC8F11.06" ; colour "2" ; gene "SPAC8F11.06 ||| brr6 ||| brl1" ; Alias "brr6" ; db_xref "SPD:12/12B09" ; synonym "brl1" ; GO "GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane
; nuclear membrane
GO:0006611; protein export from nucleus
; nuclear membrane organization and biogenesis
GO:0006406; mRNA export from nucleus
GO:0007346; regulation of mitotic cell cycle
GO:0051292; nuclear pore complex assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17993570; date=20081211 ||| term=phenotype, mononucleate; db_xref=PMID:17993570; qualifier=deletion; cv=phenotype; date=20081211 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:17993570; qualifier=deletion; cv=phenotype; date=20081211 ||| term=orthologous to S. cerevisiae YHR036W and YGL247W; db_xref=PMID:15882446; date=19700101 ||| term=complementation, functionally complemented by P. carnii Brl1; db_xref=PMID:17993570; cv=complementation; date=20081211 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "brr6" ; product "nuclear envelope protein Brr6/Brl1" ;
chromosome1 GeneDB mRNA 3711522 3713830 . + . mRNA SPAC15A10.13 ; systematic_id "SPAC15A10.13" ; colour "2" ; gene "ppk3 ||| SPAC15A10.13" ; note "protein kinase, possibly false positive?" ; Alias "ppk3" ; db_xref "SPD:46/46F11" ; GO "GO:0006409; tRNA export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=20070219 ||| term=orthologous to S. cerevisiae YOR112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk3" ; product "HEAT repeat protein Ppk3" ;
chromosome1 GeneDB mRNA 5325611 5326328 . + . mRNA SPAP8A3.06 ; systematic_id "SPAP8A3.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15121844; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; qualifier=required; date=19700101 ||| term=rrm RNA recognition motif ; qualifier=required; date=19700101 ||| term=complementation, functionally complemented by human U2AF35; cv=complementation; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "2" ; GO "GO:0000243; commitment complex
GO:0000349; generation of catalytic spliceosome for first transesterification step
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0003723; RNA binding
GO:0005686; snRNP U2" ; gene "SPAP8A3.06" ; product "U2AF small subunit, U2AF-23" ;
chromosome1 GeneDB mRNA 2050462 2051731 . - . mRNA SPAC607.09c ; systematic_id "SPAC607.09c" ; colour "2" ; gene "btn1 ||| SPAC607.09c" ; Alias "btn1" ; db_xref "SPD:18/18H12" ; GO "GO:0032153; cell division site
; cell tip
GO:0005737; cytoplasm
GO:0030176; integral to endoplasmic reticulum membrane
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0051666; actin cortical patch localization
GO:0015802; basic amino acid transport
GO:0006897; endocytosis
GO:0045324; late endosome to vacuole transport
GO:0031580; membrane raft distribution
GO:0034613; cellular protein localization
GO:0071775; regulation of cell cycle cytokinesis
GO:0034605; cellular response to heat
GO:0007035; vacuolar acidification
GO:0007035; vacuolar acidification
GO:0007033; vacuole organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16291725; date=19700101 ||| term=phenotype, sensitive to high temperature; qualifier=required; cv=phenotype; db_xref=PMID:18346214; date=20090501 ||| term=orthologous to S. cerevisiae YJL059W; date=19700101 ||| term=complementation, functionally complemented by human CLN3; db_xref=PMID:16291725; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=modification, farnesylated; qualifier=predicted; cv=pt_mod; date=19700101 ||| term=disease associated, neurological disorders; date=20091123 ||| term=disease associated, Batten's disease; date=19700101" ; primary_name "btn1" ; product "battenin CLN3 family protein" ;
chromosome1 GeneDB mRNA 4084648 4087665 . - . mRNA SPAC23A1.04c ; systematic_id "SPAC23A1.04c" ; colour "7" ; gene "mnl1 ||| SPAC23A1.04c" ; Alias "mnl1" ; db_xref "SPD:28/28F12" ; GO "GO:0005783; endoplasmic reticulum
GO:0030246; carbohydrate binding
GO:0004571; mannosyl-oligosaccharide 1,2-alpha- mannosidase activity
GO:0006516; glycoprotein catabolism
GO:0006517; protein deglycosylation
GO:0030433; ER-associated protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mnl1" ; product "alpha mannosidase Mnl1 (predicted)" ;
chromosome1 GeneDB mRNA 3923657 3924158 . - . mRNA SPAC2F3.17c ; systematic_id "SPAC2F3.17c" ; colour "7" ; gene "lsm6 ||| SPAC2F3.17c" ; Alias "lsm6" ; db_xref "SPD:02/02H02" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005688; snRNP U6
GO:0030490; maturation of SSU-rRNA" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR378C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "lsm6" ; product "U6 snRNP-associated protein Lsm6 (predicted)" ;
chromosome1 GeneDB mRNA 988361 989866 . + . mRNA SPAC821.05 ; db_xref "SPD:22/22D08" ; systematic_id "SPAC821.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=complementation, functionally complemented by human eif3h; db_xref=PMID:19061185; cv=complementation; date=20081211 ||| term=phenotype, sensitive to caffeine; qualifier=deletion; cv=phenotype; date=20081211" ; colour "2" ; GO "GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0030437; ascospore formation
GO:0071313; cellular response to caffeine
GO:0006413; translational initiation
GO:0004843; ubiquitin-specific protease activity" ; gene "SPAC821.05" ; product "translation initiation factor eIF3h (p40)" ;
chromosome1 GeneDB mRNA 2664524 2664979 . - . mRNA SPAC4F8.08 ; systematic_id "SPAC4F8.08" ; colour "8" ; gene "SPAC4F8.08 ||| mug114" ; db_xref "SPD:04/04A10" ; Alias "mug114" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug114" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4596364 4597380 . + . mRNA SPAC12B10.13 ; db_xref "SPD:41/41F08" ; systematic_id "SPAC12B10.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR135C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0045721; negative regulation of gluconeogenesis
GO:0043161; proteasomal ubiquitin dependent catabolic process
GO:0034657; GID complex" ; gene "SPAC12B10.13" ; product "proteasome-dependent catabolite inactivation protein, ubiquitin ligase complex subunit (predicted)" ;
chromosome1 GeneDB mRNA 2250008 2251161 . - . mRNA SPAC13D6.03c ; systematic_id "SPAC13D6.03c" ; colour "7" ; gene "SPAC13D6.03c ||| trm9" ; Alias "trm9" ; db_xref "SPD:08/08H09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016300; tRNA (uracil) methyltransferase activity
GO:0030488; tRNA methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "trm9" ; product "tRNA (uridine) methyltransferase Trm9 (predicted)" ; EC_number "2.1.1.-" ;
chromosome1 GeneDB mRNA 3041127 3042720 . + . mRNA SPAC24C9.03 ; systematic_id "SPAC24C9.03" ; colour "7" ; gene "SPAC24C9.03 ||| mvd1" ; Alias "mvd1" ; db_xref "SPD:18/18G02" ; GO "GO:0006696; ergosterol biosynthesis
GO:0004163; diphosphomevalonate decarboxylase activity
GO:0005829; cytosol
GO:0008299; isoprenoid biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR043W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mvd1" ; product "diphosphomevalonate decarboxylase (predicted)" ; EC_number "4.1.1.33" ; reserved_name "mvd1" ;
chromosome1 GeneDB mRNA 3302822 3310369 . + . mRNA SPAPB1E7.07 ; Alias "glt1" ; systematic_id "SPAPB1E7.07" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL171C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0016040; glutamate synthase (NADH) activity
GO:0006537; glutamate biosynthesis" ; gene "SPAPB1E7.07 ||| glt1" ; primary_name "glt1" ; product "glutamate synthase Glt1 (predicted)" ; EC_number "1.4.1.13" ;
chromosome1 GeneDB mRNA 3838660 3839443 . - . mRNA SPAC4H3.07c ; db_xref "SPD:42/42G12" ; systematic_id "SPAC4H3.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR286W and YOR285W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC4H3.07c" ; product "protein phosphatase Fmp31 (predicted)" ;
chromosome1 GeneDB mRNA 1546282 1549858 . + . mRNA SPAC167.07c ; systematic_id "SPAC167.07c" ; colour "7" ; gene "SPAC57A7.03c ||| SPAC167.07c" ; Alias "SPAC57A7.03c" ; db_xref "SPD:48/48A01" ; synonym "SPAC57A7.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=IQ domain; date=20060726 ||| term=orthologous to S. cerevisiae YGL141W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008270; zinc ion binding" ; primary_name "SPAC57A7.03c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB mRNA 3281408 3283071 . + . mRNA SPAC652.01 ; db_xref "SPD:02/02H12" ; systematic_id "SPAC652.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC652.01" ; product "BC10 family protein" ;
chromosome1 GeneDB mRNA 1345089 1348500 . - . mRNA SPAC6F12.16c ; systematic_id "SPAC6F12.16c" ; colour "2" ; gene "SPAC6F12.16c ||| mtr4" ; Alias "mtr4" ; db_xref "SPD:30/30D09" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0031499; TRAMP complex
GO:0016078; tRNA catabolism
GO:0043630; ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolism
GO:0071049; nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YJL050W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mtr4" ; product "ATP-dependent RNA helicase, TRAMP complex subunit Mtr4" ;
chromosome1 GeneDB mRNA 3100030 3101241 . + . mRNA SPAC589.04 ; systematic_id "SPAC589.04" ; colour "7" ; gene "SPAC589.04" ; note "metaxin 1 may be the ortholog of S. cerevisiae TOM37. multiply alignment has conserved common residues; TOM37 has a C term TMM region like many metaxin 1 family; both are mitochondrial membrane proteins involved in pre- protein import; S. cerevisiae ortholog for metaxin hasn't been identified and vice versa; can't make a Pfam family because it overlaps with glutathionine S-transferase" ; db_xref "SPD:41/41G04" ; GO "GO:0005741; mitochondrial outer membrane
GO:0045040; protein import into mitochondrial outer membrane
GO:0001401; mitochondrial sorting and assembly machinery complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "metaxin 1 (predicted)" ;
chromosome1 GeneDB mRNA 2460221 2460957 . - . mRNA SPAC19A8.14 ; db_xref "SPD:07/07A01" ; systematic_id "SPAC19A8.14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL057C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0004045; aminoacyl-tRNA hydrolase activity
GO:0006412; translation
GO:0005737; cytoplasm
GO:0005739; mitochondrion" ; gene "SPAC19A8.14" ; product "aminoacyl-tRNA hydrolase (predicted)" ;
chromosome1 GeneDB mRNA 4094177 4094878 . + . mRNA SPAC23A1.09 ; db_xref "SPD:02/02E09" ; systematic_id "SPAC23A1.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; gene "SPAC23A1.09" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB mRNA 3569155 3569511 . + . mRNA SPAC17A2.15 ; db_xref "SPD:04/04E08" ; systematic_id "SPAC17A2.15" ; controlled_curation "term=warning, below 100 amino acid size threshold; cv=warning; date=19700101" ; colour "6" ; gene "SPAC17A2.15" ; product "dubious" ;
chromosome1 GeneDB mRNA 1737453 1739328 . - . mRNA SPACUNK12.02c ; systematic_id "SPACUNK12.02c" ; colour "2" ; gene "cmk1 ||| SPACUNK12.02c" ; Alias "cmk1" ; obsolete_name "SPAC25D11.02C" ; db_xref "SPD:20/20A06" ; GO "GO:0005524; ATP binding
GO:0004683; calcium- and calmodulin-dependent protein kinase activity
GO:0019722; calcium-mediated signaling
GO:0006468; protein amino acid phosphorylation
GO:0007346; regulation of mitotic cell cycle
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR014C and YOL016C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7812047; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "cmk1" ; product "calcium/calmodulin-dependent protein kinase Cmk1" ; EC_number "2.7.11.17" ;
chromosome1 GeneDB mRNA 1768811 1770077 . - . mRNA SPAC17A5.09c ; systematic_id "SPAC17A5.09c" ; colour "7" ; gene "SPAC17A5.09c" ; note "conserved WDE*N.*MK**EP*TP[FY]" ; db_xref "SPD:13/13A08" ; GO "GO:0019888; protein phosphatase regulator activity
GO:0035304; regulation of protein amino acid dephosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR311C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "protein phosphatase regulatory subunit Glc9 (predicted)" ;
chromosome1 GeneDB mRNA 2114982 2116435 . - . mRNA SPAC20H4.03c ; systematic_id "SPAC20H4.03c" ; colour "2" ; gene "tfs1 ||| SPAC20H4.03c" ; Alias "tfs1" ; db_xref "SPD:50/50E02" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0008159; positive transcription elongation factor activity
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006379; mRNA cleavage
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2C2 type; date=19700101 ||| term=orthologous to S. cerevisiae YGL043W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8904334; date=20070720 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100203 ||| term=human TCEA1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; primary_name "tfs1" ; product "transcription elongation factor TFIIS" ;
chromosome1 GeneDB mRNA 4726782 4729300 . - . mRNA SPAC17D4.03c ; systematic_id "SPAC17D4.03c" ; colour "2" ; gene "cis4 ||| SPAC17D4.03c" ; Alias "cis4" ; db_xref "SPD:33/33F11" ; GO "GO:0000139; Golgi membrane
GO:0006829; zinc ion transport
GO:0005385; zinc ion transmembrane transporter activity
GO:0006882; cellular zinc ion homeostasis
GO:0005515; protein binding
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR205W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "cis4" ; product "cation diffusion family zinc membrane transporter Cis4" ;
chromosome1 GeneDB mRNA 4868588 4868959 . + . mRNA SPAC4F10.17 ; db_xref "SPD:02/02F02" ; systematic_id "SPAC4F10.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL109W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC4F10.17" ; product "conserved fungal protein" ; note "YOL109W tentative , reciprocal blast best hit, size and compositon agree" ;
chromosome1 GeneDB mRNA 2085115 2086114 . + . mRNA SPAC3C7.10 ; systematic_id "SPAC3C7.10" ; colour "7" ; gene "pex13 ||| SPAC3C7.10" ; Alias "pex13" ; db_xref "SPD:11/11F07" ; GO "GO:0005778; peroxisomal membrane
GO:0006625; protein targeting to peroxisome
GO:0016558; protein import into peroxisome matrix" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR191W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=disease associated, peroxisomal defects; date=20070627 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pex13" ; product "peroxin 13 (predicted)" ;
chromosome1 GeneDB mRNA 1368172 1369574 . + . mRNA SPAC57A10.03 ; systematic_id "SPAC57A10.03" ; colour "2" ; gene "cyp1 ||| SPAC57A10.03" ; Alias "cyp1" ; obsolete_name "cyp2" ; db_xref "SPD:12/12C08" ; GO "GO:0003755; peptidyl-prolyl cis-trans isomerase activity
GO:0005515; protein binding
GO:0006457; protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cyp1" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp1" ; EC_number "5.2.1.8" ;
chromosome1 GeneDB mRNA 1754033 1755638 . - . mRNA SPAC17A5.02c ; systematic_id "SPAC17A5.02c" ; colour "2" ; gene "dbr1 ||| SPAC17A5.02c" ; Alias "dbr1" ; db_xref "SPD:40/40F04" ; GO "GO:0005634; nucleus
GO:0008419; RNA lariat debranching enzyme activity
GO:0031070; intronic snoRNA processing
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0043144; snoRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10982890; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9001235; date=20100705 ||| term=complementation, functionally complemented by human DRB1; db_xref=PMID:10982890; cv=complementation; date=19700101 ||| term=orthologous to S. cerevisiae YKL149C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure conflict; date=20100303 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; primary_name "dbr1" ; product "RNA lariat debranching enzyme Dbr1" ; EC_number "3.1.-.-" ;
chromosome1 GeneDB mRNA 3129787 3134469 . + . mRNA SPAC688.10 ; systematic_id "SPAC688.10" ; colour "7" ; gene "rev3 ||| SPAC688.10" ; Alias "rev3" ; db_xref "SPD:30/30H03" ; GO "GO:0003887; DNA-directed DNA polymerase activity
GO:0006281; DNA repair
GO:0016035; zeta DNA polymerase complex
GO:0005739; mitochondrion
GO:0043596; nuclear replication fork
GO:0043504; mitochondrial DNA repair
GO:0070987; error-free translesion synthesis
GO:0042276; error-prone translesion synthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL167C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human REV3L ortholog; date=20100909" ; primary_name "rev3" ; product "DNA polymerase zeta catalytic subunit Rev3 (predicted)" ;
chromosome1 GeneDB mRNA 3286539 3288468 . + . mRNA SPAPB1E7.03 ; Alias "rpc82" ; systematic_id "SPAPB1E7.03" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR190C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005666; DNA-directed RNA polymerase III complex
GO:0006383; transcription from RNA polymerase III promoter
GO:0003899; DNA-directed RNA polymerase activity" ; gene "SPAPB1E7.03 ||| rpc82" ; primary_name "rpc82" ; product "DNA-directed RNA polymerase III complex subunit Rpc82 (predicted)" ;
chromosome1 GeneDB mRNA 5024816 5026190 . + . mRNA SPAC22E12.04 ; systematic_id "SPAC22E12.04" ; colour "2" ; gene "ccs1 ||| SPAC22E12.04" ; Alias "ccs1" ; db_xref "SPD:17/17C04" ; synonym "pccs" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR038C; date=19700101 ||| term=complementation, functionally complements S. cerevisiae YMR038C; db_xref=PMID:15107426; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0016532; superoxide dismutase copper chaperone activity
GO:0016531; copper chaperone activity
GO:0006878; copper ion homeostasis
GO:0071248; cellular response to metal ion
GO:0005743; mitochondrial inner membrane
GO:0005829; cytosol" ; primary_name "ccs1" ; product "superoxide dismutase copper chaperone Ccs1" ;
chromosome1 GeneDB mRNA 2907643 2910229 . - . mRNA SPAC513.01c ; systematic_id "SPAC513.01c" ; colour "2" ; db_xref "SPD:29/29C05" ; Alias "eft201" ; synonym "eft2-1 ||| etf2 ||| SPAPYUK71.04c" ; GO "GO:0003746; translation elongation factor activity
GO:0005525; GTP binding
GO:0006414; translational elongation
; ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR133W and YDR385W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "eft201" ; product "translation elongation factor 2 (EF-2) Eft2,A" ;
chromosome1 GeneDB mRNA 1855326 1856811 . + . mRNA SPAP11E10.01 ; systematic_id "SPAP11E10.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081203" ; colour "10" ; gene "SPAP11E10.01" ; product "ornithine cyclodeaminase family (predicted)" ;
chromosome1 GeneDB mRNA 3635409 3636391 . + . mRNA SPAC1142.05 ; systematic_id "SPAC1142.05" ; colour "2" ; gene "ctr5 ||| SPAC1142.05" ; Alias "ctr5" ; db_xref "SPD:05/05B11" ; GO "GO:0005886; plasma membrane
GO:0046982; protein heterodimerization activity
GO:0006825; high-affinity copper ion transport
GO:0015679; plasma membrane copper ion transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Cuf1; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YLR411W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ctr5" ; product "copper transporter complex subunit Ctr5" ;
chromosome1 GeneDB mRNA 3150693 3152830 . + . mRNA SPAC3G9.13c ; systematic_id "SPAC3G9.13c" ; colour "7" ; gene "msw1 ||| SPAC3G9.13c" ; Alias "msw1" ; db_xref "KEGG:MAP00380; ||| KEGG:MAP00970; ||| SPD:23/23E04" ; GO "GO:0006436; tryptophanyl-tRNA aminoacylation
GO:0004830; tryptophan-tRNA ligase activity
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0042803; protein homodimerization activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR268W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "msw1" ; product "mitochondrial tryptophan-tRNA ligase Msw1 (predicted)" ; EC_number "6.1.1.2" ;
chromosome1 GeneDB mRNA 4106702 4111980 . + . mRNA SPAC23A1.17 ; db_xref "SPD:48/48G09" ; systematic_id "SPAC23A1.17" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0017024; myosin I binding
GO:0030036; actin cytoskeleton organization and biogenesis" ; gene "SPAC23A1.17" ; product "WIP (Wiskott-Aldrich syndrome protein- Interacting Protein) homolog (predicted)" ;
chromosome1 GeneDB mRNA 2957853 2959122 . - . mRNA SPAPB24D3.07c ; systematic_id "SPAPB24D3.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; colour "8" ; gene "SPAPB24D3.07c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4093344 4093772 . - . mRNA SPAC23A1.08c ; systematic_id "SPAC23A1.08c" ; colour "2" ; gene "rpl34 ||| rpl34-1 ||| rpl3401 ||| SPAC23A1.08c" ; Alias "rpl3401" ; db_xref "SPD:02/02A03" ; synonym "rpl34 ||| rpl34-1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER056C-A and YIL052C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl3401" ; product "60S ribosomal protein L34" ;
chromosome1 GeneDB mRNA 4461697 4462901 . + . mRNA SPAC9E9.11 ; systematic_id "SPAC9E9.11" ; colour "2" ; gene "plr1 ||| plr ||| SPAC9E9.11" ; Alias "plr1" ; db_xref "SPD:14/14G01" ; synonym "plr" ; GO "GO:0050236; pyridoxine 4-dehydrogenase activity
GO:0042821; pyridoxal biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR127W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "plr1" ; product "pyridoxal reductase Plr1" ; EC_number "1.1.1.65" ;
chromosome1 GeneDB mRNA 1410157 1411201 . - . mRNA SPAC20G8.07c ; systematic_id "SPAC20G8.07c" ; colour "2" ; gene "SPAC20G8.07c ||| erg2" ; Alias "erg2" ; db_xref "SPD:34/34D12" ; GO "GO:0005783; endoplasmic reticulum
GO:0000247; C-8 sterol isomerase activity
GO:0030437; ascospore formation
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthesis
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane
GO:0006623; protein targeting to vacuole" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR202W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sporulation defects; db_xref=PMID:18310029; cv=phenotype; date=20091124" ; primary_name "erg2" ; product "C-8 sterol isomerase Erg2" ; EC_number "5.3.3.5" ;
chromosome1 GeneDB mRNA 3799025 3800241 . + . mRNA SPAC1556.03 ; systematic_id "SPAC1556.03" ; colour "2" ; gene "azr1 ||| SPAC1556.03" ; Alias "azr1" ; db_xref "SPD:40/40B08" ; GO "GO:0004722; protein phosphatase type 2C activity
GO:0006470; protein amino acid dephosphorylation
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, resistance to 5- azacytidine (nucleoside analogue); qualifier=overexpression; cv=phenotype; db_xref=PMID:9153756; date=20040726 ||| term=orthologous to S. cerevisiae YHR076W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; primary_name "azr1" ; product "serine/threonine protein phosphatase Azr1" ;
chromosome1 GeneDB mRNA 5161474 5163360 . + . mRNA SPAC26F1.10c ; systematic_id "SPAC26F1.10c" ; colour "2" ; gene "pyp1 ||| SPAC26F1.10c" ; Alias "pyp1" ; db_xref "SPD:34/34F11" ; GO "GO:0045930; negative regulation of progression through mitotic cell cycle
GO:0006470; protein amino acid dephosphorylation
GO:0045014; negative regulation of transcription by glucose
GO:0004725; protein tyrosine phosphatase activity
GO:0032873; negative regulation of stress- activated MAPK cascade" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR208W and YER075C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Sty1; db_xref=PMID:8649397; date=20100823 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:1448087; date=20101126" ; primary_name "pyp1" ; product "tyrosine phosphatase Pyp1" ; EC_number "3.1.3.48" ;
chromosome1 GeneDB mRNA 1872423 1873797 . - . mRNA SPAPB1A10.07c ; systematic_id "SPAPB1A10.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR105C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SERINC1 and SERINC2 and SERINC3 orrtholog; date=20100908" ; colour "7" ; GO "GO:0030148; sphingolipid biosynthesis
GO:0006658; phosphatidylserine metabolism
GO:0005886; plasma membrane" ; gene "SPAPB1A10.07c" ; product "sphingolipid biosynthesis protein (predicted)" ;
chromosome1 GeneDB mRNA 2373052 2376506 . - . mRNA SPAC22H10.03c ; systematic_id "SPAC22H10.03c" ; colour "2" ; gene "kap114 ||| SPAC22H10.03c" ; Alias "kap114" ; db_xref "SPD:48/48B05" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0005634; nucleus
GO:0008565; protein transporter activity
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YGL241W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "kap114" ; product "karyopherin Kap14" ;
chromosome1 GeneDB mRNA 1916054 1917656 . + . mRNA SPAC110.03 ; systematic_id "SPAC110.03" ; colour "2" ; gene "cdc42 ||| SPAC110.03" ; Alias "cdc42" ; db_xref "SPD:50/50D07" ; GO "GO:0032153; cell division site
GO:0009898; internal side of plasma membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005515; protein binding
GO:0032955; regulation of barrier septum formation
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0032951; regulation of beta-glucan biosynthetic process
GO:0031137; regulation of conjugation with cellular fusion
GO:0032878; regulation of establishment and/or maintenance of cell polarity
GO:0032488; Cdc42 protein signal tansduction
GO:0071521; Cdc42 GTPase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Rho family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YLR229C; date=19700101 ||| term=target of Scd1; db_xref=PMID:11042180; date=19700101 ||| term=target of Nrf1; db_xref=PMID:11042180; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=target of Rga4; db_xref=PMID:18328707; date=20080430 ||| term=pathway, Ras1-Scd; cv=pathway; date=20080718 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cdc42" ; product "Rho family GTPase Cdc42" ;
chromosome1 GeneDB mRNA 1786412 1790150 . + . mRNA SPAC17A5.16 ; systematic_id "SPAC17A5.16" ; colour "2" ; gene "SPAC17A5.16" ; db_xref "SPD:48/48B06" ; Alias "ftp105" ; GO "GO:0005515; protein binding
GO:0034613; cellular protein locaization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human c17orf28 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20091019 ||| term=orthologous to S. cerevisiae YLR436C; date=19700101 ||| term=name description, ubp Five interacting potential Transmembrane Protein; cv=name_description; date=20100420 ||| term=localization target is Ubp5; db_xref=PMID:20838651; date=20101001" ; primary_name "ftp105" ; product "Ubp5 interacting protein Ftp105" ; reserved_name "ftp105" ;
chromosome1 GeneDB mRNA 2231803 2234167 . - . mRNA SPAC18G6.09c ; db_xref "SPD:13/13B08" ; systematic_id "SPAC18G6.09c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis
GO:0034599; cellular response to oxidative stress" ; gene "SPAC18G6.09c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 82746 84603 . + . mRNA SPAC1F8.01 ; systematic_id "SPAC1F8.01" ; colour "2" ; db_xref "SPD:45/45E06" ; Alias "ght3" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "ght3" ; product "hexose transporter Ght3" ;
chromosome1 GeneDB mRNA 4519036 4520130 . + . mRNA SPAC27D7.06 ; db_xref "SPD:15/15D08" ; systematic_id "SPAC27D7.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human ETFA ortholog; date=20100718" ; colour "10" ; GO "GO:0005759; mitochondrial matrix
GO:0009055; electron carrier activity" ; gene "SPAC27D7.06" ; product "electron transfer flavoprotein alpha subunit (predicted)" ;
chromosome1 GeneDB mRNA 414272 414821 . - . mRNA SPAC31A2.13c ; systematic_id "SPAC31A2.13c" ; colour "7" ; gene "sft1 ||| SPAC31A2.13c" ; Alias "sft1" ; db_xref "SPD:01/01G12" ; GO "GO:0006886; intracellular protein transport
GO:0000139; Golgi membrane
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0005484; SNAP receptor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=orthologous to S. cerevisiae YKL006C-A; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "sft1" ; product "SNARE Sft1 (predicted)" ;
chromosome1 GeneDB mRNA 3612082 3614883 . + . mRNA SPAC17G6.12 ; systematic_id "SPAC17G6.12" ; colour "2" ; gene "cul1 ||| pcu1 ||| SPAC17G6.12" ; Alias "cul1" ; db_xref "SPD:47/47B10" ; synonym "pcu1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9990507; date=20100708 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=deletion; db_xref=PMID:9990507; date=20100730 ||| term=modification, neddylated; cv=pt_mod; qualifier=required; db_xref=PMID:10880460; date=19700101 ||| term=orthologous to S. cerevisiae YDL132W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0019005; SCF ubiquitin ligase complex
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle
GO:0032876; negative regulation of DNA endoreduplication" ; primary_name "cul1" ; product "cullin 1" ;
chromosome1 GeneDB mRNA 570141 571847 . + . mRNA SPAC2F7.17 ; db_xref "SPD:25/25C12" ; systematic_id "SPAC2F7.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL143C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0003747; translation release factor activity
GO:0006415; translational termination
GO:0006412; protein biosynthesis
GO:0005739; mitochondrion" ; gene "SPAC2F7.17" ; product "mitochondrial peptide chain release factor (predicted)" ;
chromosome1 GeneDB mRNA 831940 836067 . + . mRNA SPAC2G11.12 ; systematic_id "SPAC2G11.12" ; colour "2" ; gene "rqh1 ||| hus2 ||| rad12 ||| rec9 ||| SPAC2G11.12" ; Alias "rqh1" ; db_xref "SPD:39/39D09" ; synonym "hus2 ||| rad12 ||| rec9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9184215; date=19700101 ||| term=phenotype, spindle checkpoint activated; cv=phenotype; db_xref=PMID:16303848; date=20080104 ||| term=phenotype, sensitive to HU; cv=phenotype; date=20090729 ||| term=phenotype, DNA damage checkpoint defects, S-phase; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:9184215; date=20101004 ||| term=disease associated, Bloom's syndrome; date=20060724 ||| term=disease associated, cancer; date=20060724 ||| term=RecQ family; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YMR190C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Hydroxy Urea Sensitive; cv=name_description; date=20090729 ||| term=human BLM and WRN ortholog; date=20100217" ; GO "GO:0031422; RecQ helicase-Topo III complex
GO:0043596; nuclear replication fork
GO:0005524; ATP binding
GO:0043140; ATP-dependent 3' to 5' DNA helicase activity
GO:0003677; DNA binding
GO:0005515; protein binding
GO:0006268; DNA unwinding during replication
GO:0009650; UV protection
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0031573; intra-S DNA damage checkpoint
; maintenance of rDNA
GO:0043007; maintenance of rDNA
GO:0007131; meiotic recombination
GO:0045950; negative regulation of mitotic recombination
GO:0000725; recombinational repair
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0034065; replication fork processing at rDNA locus
GO:0071140; resolution of mitotic recombination intermediates
GO:0006974; response to DNA damage stimulus
GO:0000723; telomere maintenance
GO:0000723; telomere maintenance" ; primary_name "rqh1" ; product "RecQ type DNA helicase Rqh1" ;
chromosome1 GeneDB mRNA 707970 710228 . - . mRNA SPAC1296.01c ; systematic_id "SPAC1296.01c" ; colour "7" ; gene "SPAC22F3.01 ||| SPAC1296.01c" ; Alias "SPAC22F3.01" ; db_xref "SPD:27/27B08" ; synonym "SPAC22F3.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=human PGM3 ortholog; date=20101222" ; GO "GO:0004610; phosphoacetylglucosamine mutase activity
GO:0006048; UDP-N-acetylglucosamine biosynthesis
GO:0031501; mannosyltransferase complex" ; primary_name "SPAC22F3.01" ; product "phosphoacetylglucosamine mutase (predicted)" ; EC_number "5.4.2.3" ;
chromosome1 GeneDB mRNA 3554552 3556538 . - . mRNA SPAC17A2.03c ; systematic_id "SPAC17A2.03c" ; colour "7" ; gene "vma6 ||| SPAC17A2.03c" ; db_xref "SPD:43/43G04" ; Alias "vma6" ; GO "GO:0000220; vacuolar proton-transporting V-type ATPase, V0 domain
GO:0005524; ATP binding
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR447C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vma6" ; product "V-type ATPase V0 subunit d (predicted)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB mRNA 4769991 4771708 . - . mRNA SPAC1782.09c ; systematic_id "SPAC1782.09c" ; colour "2" ; gene "clp1 ||| flp1 ||| SPAC1782.09c" ; Alias "clp1" ; db_xref "SPD:45/45E07" ; synonym "flp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11683392; date=19700101 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=complementation, functionally complemented by human CDC14; db_xref=PMID:15911625; cv=complementation; date=19700101 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:16085490; cv=localization; date=19700101 ||| term=orthologous to S. cerevisiae YFR028C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; db_xref=PMID:11683392; date=20090213 ||| term=localization of chromosomal passenger complex to spindle midzone; db_xref=PMID:19570910; date=20090707 ||| term=target is Klp9; qualifier=dephosphorylates; db_xref=PMID:19666868; date=20090820 ||| term=target is Ase1; qualifier=dephosphorylates; db_xref=PMID:19666868; date=20090820 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:11448769; date=20101124 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:11448769; date=20101124 ||| term=target is Clp1; date=20101124" ; GO "GO:0000777; condensed chromosome kinetochore
GO:0005826; contractile ring
GO:0005737; cytoplasm
GO:0031097; medail ring
GO:0005730; nucleolus
GO:0005816; spindle pole body
GO:0004721; phosphoprotein phosphatase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004864; protein phosphatase inhibitor activity
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0031566; contractile ring maintenance involved in cytokinesis
GO:0031565; cytokinesis checkpoint
GO:0031565; cytokinesis checkpoint
GO:0000070; mitotic sister chromatid segregation
GO:0045736; negative regulation of cyclin- dependent protein kinase activity
GO:0031031; positive regulation of septation initiation signaling
GO:0006470; protein amino acid dephosphorylation
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0007096; regulation of exit from mitosis
GO:0031134; sister chromatid biorientation" ; primary_name "clp1" ; product "Cdc14-related protein phosphatase Clp1/Flp1" ;
chromosome1 GeneDB mRNA 1284531 1285484 . - . mRNA SPAPB17E12.12c ; systematic_id "SPAPB17E12.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YPR011C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20091106 ||| term=human SLC25A42 ortholog; date=20091106" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0015228; coenzyme A transmembrane transporter activity
GO:0071077; adenosine 3',5'-bisphosphate transmembrane transporter activity
GO:0071106; adenosine 3',5'-bisphosphate transmembrane transport
GO:0035349; coenzyme A transmembrane transport" ; gene "SPAPB17E12.12c" ; product "mitochondrial coenzyme A/ diphosphate transporter (predicted)" ;
chromosome1 GeneDB mRNA 1451902 1453333 . - . mRNA SPAC3A12.17c ; systematic_id "SPAC3A12.17c" ; colour "2" ; gene "cys12 ||| cys1b ||| SPAC3A12.17c" ; Alias "cys12" ; db_xref "SPD:18/18H08" ; synonym "cys1b" ; GO "GO:0004124; cysteine synthase activity
GO:0006535; cysteine biosynthetic process from serine
GO:0005739; mitochondrion
GO:0019344; cysteine biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cys12" ; product "cysteine synthase Cys12" ; EC_number "2.5.1.47" ;
chromosome1 GeneDB mRNA 4724786 4726770 . + . mRNA SPAC17D4.02 ; systematic_id "SPAC17D4.02" ; colour "2" ; gene "cdc45 ||| sna41 ||| goa1 ||| SPAC17D4.02" ; Alias "cdc45" ; db_xref "SPD:39/39F03" ; synonym "sna41 ||| goa1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9619628; date=19700101 ||| term=orthologous to S. cerevisiae YLR103C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human CDC45L ortholog; date=20100630 ||| term=phenotype, cell morphology, elongated cells; allele=sna41-912; qualifier=ts; db_xref=PMID:9619628; date=20100705" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0043596; nuclear replication fork
GO:0000790; nuclear chromatin
GO:0006270; DNA replication initiation
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006271; DNA strand elongation during replication
GO:0071163; DNA replication preinitiation complex assembly
GO:0000790; nuclear chromatin" ; primary_name "cdc45" ; product "DNA replication pre-initiation complex subunit Cdc45" ;
chromosome1 GeneDB mRNA 1588575 1589622 . + . mRNA SPAC23H4.11c ; systematic_id "SPAC23H4.11c" ; colour "2" ; gene "cnl2 ||| SPAC23H4.11c" ; Alias "cnl2" ; db_xref "SPD:07/07C12" ; GO "GO:0000776; kinetochore" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17035632; date=20070213 ||| term=orthologous to S. cerevisiae YLR315W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "cnl2" ; product "centromere localized protein Cnl2" ;
chromosome1 GeneDB mRNA 2825583 2827013 . - . mRNA SPAC3F10.05c ; systematic_id "SPAC3F10.05c" ; colour "10" ; gene "SPAC3F10.05c ||| mug113" ; note "this has just moved into a Pfam nuclease, awaiting accession" ; Alias "mug113" ; db_xref "SPD:14/14B05" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL034W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Bacteria; date=20090202 ||| term=T5orf172 family; qualifier=false_negative; date=20100415" ; primary_name "mug113" ; product "T5orf172 family protein" ;
chromosome1 GeneDB mRNA 2259943 2261801 . + . mRNA SPAC4G9.05 ; systematic_id "SPAC4G9.05" ; colour "7" ; gene "SPAC4G9.05 ||| mpf1" ; Alias "mpf1" ; db_xref "SPD:26/26C03" ; GO "GO:0003729; mRNA binding
GO:0005737; cytoplasm
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060420 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YLL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mpf1" ; product "meiotic PUF family protein 1 (predicted)" ;
chromosome1 GeneDB mRNA 3327940 3329007 . - . mRNA SPAC2E1P5.04c ; systematic_id "SPAC2E1P5.04c" ; colour "2" ; gene "cwg2 ||| orb7 ||| SPAC2E1P5.04c" ; Alias "cwg2" ; db_xref "SPD:16/16D04" ; synonym "orb7" ; GO "GO:0005953; CAAX-protein geranylgeranyltransferase complex
GO:0004663; Rab-protein geranylgeranyltransferase activity
GO:0005515; protein binding
GO:0004661; protein geranylgeranyltransferase activity
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0018344; protein geranylgeranylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9781874; date=20070215 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:8522609; date=20100731 ||| term=orthologous to S. cerevisiae YGL155W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Rho1; db_xref=PMID:9781874; date=20100823" ; primary_name "cwg2" ; product "geranylgeranyltransferase I beta subunit Cwg2" ; EC_number "2.5.1.-" ;
chromosome1 GeneDB mRNA 3392856 3394341 . - . mRNA SPAC959.04c ; systematic_id "SPAC959.04c" ; colour "7" ; gene "SPAC959.04c" ; Alias "omh6" ; db_xref "SPD:16/16C10" ; GO "GO:0000139; Golgi membrane
GO:0000032; cell wall mannoprotein biosynthesis
GO:0035268; protein amino acid mannosylation
GO:0000026; alpha-1,2-mannosyltransferase activity" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, pear shaped; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100625 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "omh6" ; product "alpha-1,2-mannosyltransferase Omh6 (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB mRNA 310267 311533 . - . mRNA SPAC18B11.04 ; systematic_id "SPAC18B11.04" ; colour "2" ; gene "ncs1 ||| SPAC18B11.04" ; Alias "ncs1" ; db_xref "EMBL:AY225216 ||| SPD:43/43B11" ; GO "GO:0006874; calcium ion homeostasis
GO:0005509; calcium ion binding
GO:0019933; cAMP-mediated signaling
GO:0031137; regulation of conjugation with cellular fusion
GO:0005737; cytoplasm
GO:0005886; plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR373W; date=19700101 ||| term=EF hand; date=19700101 ||| term=target is Git3; qualifier=predicted; db_xref=PMID:14722091; date=19700101 ||| term=modification, N-myristoylated; cv=pt_mod; db_xref=PMID:14722091; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ncs1" ; product "related to neuronal calcium sensor Ncs1" ;
chromosome1 GeneDB mRNA 1424697 1425562 . - . mRNA SPAC3A12.04c ; db_xref "SPD:43/43B08" ; systematic_id "SPAC3A12.04c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0008033; tRNA processing
GO:0005655; nucleolar ribonuclease P complex
GO:0000172; ribonuclease MRP complex
GO:0006364; rRNA processing
GO:0004526; ribonuclease P activity
GO:0000171; ribonuclease MRP activity" ; gene "SPAC3A12.04c" ; product "RNase P and RNase MRP subunit p30 (predicted)" ; EC_number "3.1.26.5" ;
chromosome1 GeneDB mRNA 4141281 4142329 . - . mRNA SPAC26H5.10c ; systematic_id "SPAC26H5.10c" ; colour "7" ; gene "tif51 ||| SPAC26H5.10c" ; db_xref "SPD:04/04D03" ; Alias "tif51" ; GO "GO:0003746; translation elongation factor activity
GO:0045901; positive regulation of translational elongation
GO:0022626; cytosolic ribosome
GO:0043022; ribosome binding
GO:0045905; positive regulation of translational termination
GO:0003723; RNA binding
GO:0006452; translational frameshifting" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR047C and YEL034W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tif51" ; product "translation elongation factor eIF5A (predicted)" ;
chromosome1 GeneDB mRNA 4217218 4219174 . - . mRNA SPAC1F7.02c ; systematic_id "SPAC1F7.02c" ; colour "7" ; gene "SPAC1F7.02c" ; Alias "has1" ; db_xref "SPD:35/35H01" ; GO "GO:0006364; rRNA processing
GO:0004004; ATP-dependent RNA helicase activity
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YMR290C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "has1" ; product "ATP-dependent RNA helicase Has1 (predicted)" ;
chromosome1 GeneDB mRNA 3228517 3230986 . + . mRNA SPAC6G10.07 ; db_xref "SPD:28/28E10" ; systematic_id "SPAC6G10.07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0003729; mRNA binding
GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000243; commitment complex
GO:0005846; nuclear cap binding complex" ; gene "SPAC6G10.07" ; product "nuclear cap-binding complex large subunit (predicted)" ;
chromosome1 GeneDB mRNA 4502333 4503468 . + . mRNA SPAC1851.03 ; systematic_id "SPAC1851.03" ; colour "2" ; gene "ckb1 ||| SPAC1851.03" ; Alias "ckb1" ; db_xref "SPD:14/14B01" ; GO "GO:0005956; protein kinase CK2 complex
GO:0019887; protein kinase regulator activity
GO:0006468; protein amino acid phosphorylation
GO:0006383; transcription from RNA polymerase III promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR039W and YGL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "ckb1" ; product "CK2 family regulatory subunit Ckb1" ;
chromosome1 GeneDB mRNA 5552811 5554529 . + . mRNA SPAC186.09 ; db_xref "SPD:45/45F03" ; systematic_id "SPAC186.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC1F8.07C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004737; pyruvate decarboxylase activity
GO:0009063; amino acid catabolic process
GO:0006091; generation of precursor metabolites and energy
GO:0006090; pyruvate metabolic process" ; colour "7" ; gene "SPAC186.09" ; product "pyruvate decarboxylase (predicted)" ;
chromosome1 GeneDB mRNA 4366000 4366753 . - . mRNA SPAC23D3.17 ; db_xref "PMID:18488015" ; systematic_id "SPAC23D3.17" ; controlled_curation "term=species distribution, no apparent S. cerevisiae ortholog; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; colour "10" ; gene "SPAC23D3.17" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 2181533 2184448 . - . mRNA SPAC13F5.06c ; systematic_id "SPAC13F5.06c" ; colour "7" ; gene "sec10 ||| SPAC13F5.06c" ; Alias "sec10" ; db_xref "SPD:29/29E02" ; GO "GO:0000145; exocyst
GO:0006904; vesicle docking during exocytosis
GO:0006886; intracellular protein transport
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0051285; cell cortex of cell tip
GO:0032153; cell division site" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec10" ; product "exocyst complex subunit Sec10 (predicted)" ;
chromosome1 GeneDB mRNA 2045186 2047167 . - . mRNA SPAC607.06c ; db_xref "SPD:37/37A10" ; systematic_id "SPAC607.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL108W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC607.06c" ; product "metallopeptidase" ;
chromosome1 GeneDB mRNA 2749790 2750971 . - . mRNA SPAC6F6.10c ; systematic_id "SPAC6F6.10c" ; colour "2" ; gene "arc2 ||| arc34 ||| SPAC6F6.10c" ; Alias "arc2" ; db_xref "SPD:14/14E05" ; synonym "arc34" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0000147; actin cortical patch assembly
GO:0006897; endocytosis" ; primary_name "arc2" ; product "ARP2/3 actin-organizing complex subunit Arc34" ;
chromosome1 GeneDB mRNA 1695057 1696265 . + . mRNA SPAC824.06 ; systematic_id "SPAC824.06" ; colour "7" ; gene "tim14 ||| SPAC824.06" ; Alias "tim14" ; db_xref "SPD:05/05C01" ; GO "GO:0001405; presequence translocase-associated import motor
GO:0001671; ATPase activator activity
GO:0030544; Hsp70 protein binding
GO:0015450; protein translocase activity
GO:0051082; unfolded protein binding
GO:0030150; protein import into mitochondrial matrix" ; controlled_curation "term=orthologous to S. cerevisiae YLR008C and YNL328C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tim14" ; product "TIM23 translocase complex subunit Tim14 (predicted)" ;
chromosome1 GeneDB mRNA 1060686 1062889 . - . mRNA SPAC23C4.18c ; systematic_id "SPAC23C4.18c" ; colour "2" ; gene "SPAC23C4.18c" ; Alias "rad4" ; db_xref "SPD:27/27F12" ; synonym "cut5 ||| dre3 ||| dpb11" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000077; DNA damage checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0071163; DNA replication preinitiation complex assembly
GO:0031574; S-M checkpoint" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; date=19700101 ||| term=orthologous to S. cerevisiae YJL090C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Defect in REreplication; db_xref=PMID:15466421; cv=name_description; date=20091118 ||| term=phenotype, cut; cv=phenotype; date=20091118" ; primary_name "rad4" ; product "BRCT domain protein Rad4" ;
chromosome1 GeneDB mRNA 5354817 5357293 . + . mRNA SPAC4D7.03 ; systematic_id "SPAC4D7.03" ; colour "2" ; gene "pop2 ||| sud1 ||| SPAC4D7.03" ; Alias "pop2" ; db_xref "SPD:27/27H09" ; synonym "sud1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=deletion; date=20100730 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9990507; date=20100730 ||| term=F-box protein; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YFL009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Cig2; db_xref=PMID:14970237; date=20100823" ; GO "GO:0006511; ubiquitin-dependent protein catabolism
GO:0019005; SCF ubiquitin ligase complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030674; protein binding, bridging
GO:0032876; negative regulation of DNA endoreduplication
GO:0005635; nucleus
GO:0007346; regulation of mitotic cell cycle" ; primary_name "pop2" ; product "F-box/WD repeat protein Pop2" ;
chromosome1 GeneDB mRNA 2126067 2128359 . + . mRNA SPAC20H4.09 ; systematic_id "SPAC20H4.09" ; colour "7" ; gene "SPAC20H4.09" ; obsolete_name "SPAC145.03" ; db_xref "SPD:38/38B07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding" ; product "ATP-dependent RNA helicase, spliceosomal (predicted)" ;
chromosome1 GeneDB mRNA 3638649 3639642 . - . mRNA SPAC1142.07c ; systematic_id "SPAC1142.07c" ; colour "2" ; gene "vps32 ||| snf7 ||| SPAC1142.07c" ; Alias "vps32" ; db_xref "SPD:10/10A03" ; synonym "snf7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR025W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000815; ESCRT III complex
GO:0045324; late endosome to vacuole transport
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway" ; primary_name "vps32" ; product "ESCRT III complex subunit Vps32" ;
chromosome1 GeneDB mRNA 2145272 2146784 . + . mRNA SPAC23C11.08 ; systematic_id "SPAC23C11.08" ; colour "2" ; gene "php3 ||| SPAC23C11.08" ; Alias "php3" ; db_xref "SPD:08/08D01" ; GO "GO:0031670; cellular response to nutrient
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016602; CCAAT-binding factor complex
GO:0005634; nucleus
GO:0006109; regulation of carbohydrate metabolism
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBL021C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DNA binding specificity, complex binds 5'-CCAAT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates pcl1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates sdh41; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates isa1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates fbp1; db_xref=PMID:11238405; date=20100302" ; primary_name "php3" ; product "CCAAT-binding factor complex subunit Php3" ;
chromosome1 GeneDB mRNA 1292457 1293887 . - . mRNA SPAC1565.02c ; db_xref "SPD:18/18H05" ; systematic_id "SPAC1565.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005100; Rho GTPase activator activity
GO:0032319; regulation of Rho GTPase activity" ; colour "7" ; gene "SPAC1565.02c" ; product "Rho-type GTPase activating protein (predicted)" ;
chromosome1 GeneDB mRNA 3691307 3691879 . + . mRNA SPAC15A10.07 ; db_xref "SPD:06/06B02" ; systematic_id "SPAC15A10.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC15A10.07" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4010686 4011249 . - . mRNA SPAC27E2.04c ; Alias "mug155" ; db_xref "SPD:05/05H08" ; systematic_id "SPAC27E2.04c" ; colour "6" ; gene "SPAC27E2.04c ||| mug155" ; primary_name "mug155" ; product "dubious" ;
chromosome1 GeneDB mRNA 233211 235137 . - . mRNA SPAC806.02c ; systematic_id "SPAC806.02c" ; colour "7" ; gene "SPAC806.02c" ; note "gene structure confirmed (pers. comm. Ryo Hanai)" ; db_xref "SPD:46/46A10" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0016226; iron-sulfur cluster assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; date=20060911 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20060825 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR267C (C-term); date=19700101 ||| term=orthologous to S. cerevisiae YIL003W (N-term); date=19700101" ; product "Par A family ATPase/WD repeat iron cluster assembly fusion protein (predicted)" ;
chromosome1 GeneDB mRNA 1340252 1342427 . + . mRNA SPAC6F12.14 ; systematic_id "SPAC6F12.14" ; colour "2" ; gene "cut23 ||| apc8 ||| SPAC6F12.14" ; Alias "cut23" ; db_xref "SPD:27/27E10" ; synonym "apc8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=phenotype, sterile; allele=cut23-194; date=20100727 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; allele=cut23- PD26; db_xref=PMID:11777938; date=20100727 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005680; anaphase-promoting complex
GO:0005515; protein binding
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0016567; protein ubiquitination" ; primary_name "cut23" ; product "anaphase-promoting complex subunit Apc8" ;
chromosome1 GeneDB mRNA 3520294 3522375 . - . mRNA SPAC16E8.11c ; systematic_id "SPAC16E8.11c" ; colour "7" ; gene "tfb1 ||| SPAC16E8.11c" ; Alias "tfb1" ; db_xref "SPD:25/25D09" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0000112; nucleotide-excision repair factor 3 complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000717; nucleotide-excision repair, DNA duplex unwinding
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR311W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human GTF2H1 ortholog; date=20110113" ; primary_name "tfb1" ; product "transcription factor TFIIH complex subunit Tfb1 (predicted)" ;
chromosome1 GeneDB mRNA 3259647 3261107 . + . mRNA SPAC6G9.08 ; systematic_id "SPAC6G9.08" ; colour "2" ; gene "SPAC6G9.08 ||| ubp6" ; Alias "ubp6" ; db_xref "SPD:21/21G02" ; GO "GO:0005654; nucleoplasm
GO:0000502; protease complex
GO:0004221; ubiquitin thiolesterase activity
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0071947; protein deubiquitination involved in proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YFR010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human USP14 ortholog; date=20101001" ; primary_name "ubp6" ; product "ubiquitin C-terminal hydrolase Ubp6" ; EC_number "3.1.2.15" ;
chromosome1 GeneDB mRNA 1485616 1486862 . + . mRNA SPAC9.11 ; db_xref "SPD:15/15H04" ; systematic_id "SPAC9.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC9.11" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2357361 2357931 . + . mRNA SPAC17G8.09 ; systematic_id "SPAC17G8.09" ; colour "2" ; gene "shg1 ||| SPAC17G8.09" ; Alias "shg1" ; db_xref "SPD:06/06A10" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0016571; histone methylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=orthologous to S. cerevisiae YBR258C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "shg1" ; product "Set1C complex subunit Shg1" ;
chromosome1 GeneDB mRNA 1818587 1820346 . - . mRNA SPAC1002.12c ; db_xref "SPD:24/24B12" ; systematic_id "SPAC1002.12c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006538; glutamate catabolism
GO:0004777; succinate-semialdehyde dehydrogenase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, 4- hydroxybutyricaciduria; date=20060920 ||| term=orthologous to S. cerevisiae YBR006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAC1002.12c" ; product "succinate-semialdehyde dehydrogenase (predicted)" ; EC_number "1.2.1.16" ;
chromosome1 GeneDB mRNA 2547336 2553665 . - . mRNA SPAC4A8.05c ; systematic_id "SPAC4A8.05c" ; colour "2" ; gene "myp2 ||| myo3 ||| SPAC4A8.05c" ; Alias "myp2" ; db_xref "SPD:34/34C05" ; synonym "myo3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; qualifier=deletion|during_nutrient_limitation; db_xref=PMID:9398685; date=20100705 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|during_nutrient_limitation; db_xref=PMID:9398685; date=20100705 ||| term=phenotype, cell morphology, branched; qualifier=deletion|during_nutrient_limitation; db_xref=PMID:9398685; date=20100705 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YHR023W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=human MYH9 and MYH11 ortholog; date=20100218" ; GO "GO:0016460; myosin II complex
GO:0033205; cell cycle cytokinesis
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003779; actin binding
GO:0003774; motor activity
GO:0005826; contractile ring
GO:0000915; cytokinesis, contractile ring formation
GO:0005524; ATP binding" ; primary_name "myp2" ; product "myosin II heavy chain Myo3" ;
chromosome1 GeneDB mRNA 1372813 1375561 . - . mRNA SPAC57A10.05c ; systematic_id "SPAC57A10.05c" ; colour "2" ; gene "pof1 ||| SPAC57A10.05c" ; Alias "pof1" ; db_xref "SPD:36/36F07" ; GO "GO:0019005; SCF ubiquitin ligase complex
GO:0000152; nuclear ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle
GO:0071276; cellular response to cadmium ion
GO:0071276; cellular response to cadmium ion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15147268; date=19700101 ||| term=orthologous to S. cerevisiae YIL046W; date=19700101 ||| term=WD repeat protein; date=20080125 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human FBXW7 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=target is Zip1; db_xref=PMID:15660136; date=20100823" ; primary_name "pof1" ; product "F-box/WD repeat protein protein Pof1" ;
chromosome1 GeneDB mRNA 1047267 1047654 . + . mRNA SPAC23C4.11 ; systematic_id "SPAC23C4.11" ; colour "7" ; gene "atp18 ||| SPAC23C4.11" ; Alias "atp18" ; db_xref "SPD:01/01C05" ; GO "GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0016021; integral to membrane
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YML081C-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "atp18" ; product "F0-ATPase subunit J (predicted)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB mRNA 2523372 2524622 . - . mRNA SPAC23H3.15c ; db_xref "SPD:14/14A06" ; systematic_id "SPAC23H3.15c" ; synonym "SPAC25H1.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; GO "GO:0034599; cellular response to oxidative stress" ; colour "8" ; gene "SPAC23H3.15c ||| SPAC25H1.01c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4212578 4216863 . - . mRNA SPAC1F7.01c ; systematic_id "SPAC1F7.01c" ; colour "7" ; gene "spt6 ||| SPAC694.07c ||| SPAC1F7.01c" ; Alias "spt6" ; db_xref "SPD:30/30F06" ; synonym "SPAC694.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR116W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006336; DNA replication-independent nucleosome assembly
GO:0000790; nuclear chromatin
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0043486; histone exchange
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0034401; establishment or maintenance of chromatin architecture during transcription
GO:0008023; transcription elongation factor complex
GO:0005739; mitichondrion" ; primary_name "spt6" ; product "transcription elongation factor Spt6 (predicted)" ;
chromosome1 GeneDB mRNA 2043812 2045077 . + . mRNA SPAC607.05 ; systematic_id "SPAC607.05" ; colour "2" ; gene "rpn9 ||| SPAC607.05" ; Alias "rpn9" ; db_xref "SPD:19/19B09" ; GO "GO:0005634; nucleus
GO:0008541; proteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR427W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpn9" ; product "19S proteasome regulatory subunit Rpn9" ;
chromosome1 GeneDB mRNA 3326852 3327959 . + . mRNA SPAC2E1P5.03 ; db_xref "SPD:12/12F04" ; systematic_id "SPAC2E1P5.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding" ; gene "SPAC2E1P5.03" ; product "DNAJ domain protein Erj5 (predicted)" ;
chromosome1 GeneDB mRNA 3910681 3912604 . - . mRNA SPAC323.03c ; db_xref "SPD:26/26C09" ; systematic_id "SPAC323.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC323.03c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2818046 2821126 . - . mRNA SPAC3F10.02c ; systematic_id "SPAC3F10.02c" ; colour "2" ; gene "trk1 ||| sptrk ||| SPAC3F10.02c" ; Alias "trk1" ; db_xref "SPD:29/29C02" ; synonym "sptrk" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL129C and YKR050W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0015079; potassium ion transporter activity
GO:0006813; potassium ion transport
GO:0030007; potassium ion homeostasis
GO:0006813; potassium ion transport
GO:0033554; cellular response to stress
GO:0005886; plasma membrane
GO:0042391; regulation of membrane potential
GO:0030003; cation homeostasis
GO:0042493; response to drug
GO:0071473; cellular response to cation stress" ; primary_name "trk1" ; product "potassium ion transporter Trk1" ;
chromosome1 GeneDB mRNA 3588585 3590604 . - . mRNA SPAC17G6.02c ; systematic_id "SPAC17G6.02c" ; colour "2" ; gene "SPAC17G6.02c ||| tco1" ; Alias "tco1" ; db_xref "SPD:13/13H11" ; GO "GO:0005886; plasma membrane
GO:0004012; phospholipid-translocating ATPase activity
GO:0034599; cellular response to oxidative stress
GO:0045332; phospholipid translocation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR049C and YER185W and YGR213C and YLR046C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal anchor; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, alternative transcripts; db_xref=PMID:18276645; cv=gene_ex; date=20080903 ||| term=warning, in the current viewer tco1 gene is hidden behind SPNCRNA.600; cv=warning; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100827" ; primary_name "tco1" ; product "RTA1-like protein" ;
chromosome1 GeneDB mRNA 3505657 3506981 . - . mRNA SPAC16E8.04c ; db_xref "SPD:10/10D11" ; systematic_id "SPAC16E8.04c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR060C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0006571; tyrosine biosynthesis
GO:0000162; tryptophan biosynthesis
GO:0009094; phenylalanine biosynthesis, shikimate pathway
GO:0004106; chorismate mutase activity
GO:0042803; protein homodimerization activity" ; gene "SPAC16E8.04c" ; product "chorismate mutase (predicted)" ; EC_number "5.4.99.5" ;
chromosome1 GeneDB mRNA 3492899 3494497 . - . mRNA SPAC328.08c ; systematic_id "SPAC328.08c" ; colour "7" ; gene "SPAC328.08c" ; Alias "tbc1" ; db_xref "SPD:17/17A12" ; GO "GO:0005737; cytoplasm
GO:0007023; post-chaperonin tubulin folding pathway
GO:0005096; GTPase activator activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL241C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TBCC ortholog; date=20110113" ; primary_name "tbc1" ; product "tubulin specific chaperone cofactor C Tbc1 (predicted)" ;
chromosome1 GeneDB mRNA 1006290 1007832 . + . mRNA SPAC821.11 ; systematic_id "SPAC821.11" ; colour "7" ; gene "pro1 ||| SPAC821.11" ; Alias "pro1" ; db_xref "SPD:21/21A06" ; GO "GO:0004350; glutamate-5-semialdehyde dehydrogenase activity
GO:0006561; proline biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR323C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pro1" ; product "gamma-glutamyl phosphate reductase Pro1 (predicted)" ; EC_number "1.2.1.41" ;
chromosome1 GeneDB mRNA 4638117 4639541 . + . mRNA SPAC30C2.04 ; db_xref "SPD:21/21A02" ; systematic_id "SPAC30C2.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL105W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0006418; tRNA aminoacylation for protein translation
GO:0005737; cytoplasm
GO:0017102; methionyl glutamyl tRNA synthetase complex
GO:0000049; tRNA binding" ; gene "SPAC30C2.04" ; product "cofactor for methionyl-and glutamyl-tRNA synthetases (predicted)" ;
chromosome1 GeneDB mRNA 4295188 4296269 . + . mRNA SPAC25G10.01 ; systematic_id "SPAC25G10.01" ; colour "10" ; gene "SPAC2C4.18 ||| SPAC25G10.01" ; Alias "SPAC2C4.18" ; db_xref "SPD:12/12B10" ; synonym "SPAC2C4.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "SPAC2C4.18" ; product "RNA-binding protein" ;
chromosome1 GeneDB mRNA 2300331 2303356 . - . mRNA SPAC13G7.04c ; systematic_id "SPAC13G7.04c" ; colour "2" ; gene "mac1 ||| SPAC13G7.04c" ; Alias "mac1" ; db_xref "SPD:28/28B08" ; GO "GO:0000935; barrier septum
GO:0000920; cell separation during cytokinesis
GO:0031520; plasma membrane of cell tip" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL019W and YFR012W and YMR063W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mac1" ; product "membrane anchored protein Mac1" ;
chromosome1 GeneDB mRNA 914991 919667 . + . mRNA SPAC1687.09 ; db_xref "SPD:30/30F10" ; systematic_id "SPAC1687.09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=; date=19700101 ||| term=orthologous to S. cerevisiae YJL083W and YKR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005546; phosphatidylinositol-4,5-bisphosphate binding
GO:0048015; phosphoinositide-mediated signaling" ; gene "SPAC1687.09" ; product "ENTH/VHS domain protein (predicted)" ;
chromosome1 GeneDB mRNA 3407654 3409574 . - . mRNA SPAP32A8.03c ; systematic_id "SPAP32A8.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human RNF126 ortholog; date=20070913 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAP32A8.03c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB mRNA 1104799 1106555 . + . mRNA SPAC30D11.08c ; systematic_id "SPAC30D11.08c" ; colour "2" ; gene "phf2 ||| SPAC30D11.08c ||| swp2 ||| saf60" ; Alias "phf2" ; db_xref "SPD:34/34H08" ; synonym "swp2 ||| saf60" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20061218 ||| term=zf-PHD finger; cv=protein_family; date=20061218 ||| term=name description, SWm associated Phd1; cv=name_description; db_xref=PMID:17440621; date=20061218 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17371846; date=20070421 ||| term=human retinoblastoma binding protein 2-like; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0033193; Lsd1/2 complex
GO:0031491; nucleosome binding
GO:0033169; histone H3-K9 demethylation
GO:0034605; cellular response to heat
GO:0019787; small conjugating protein ligase activity
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "phf2" ; product "Lsd1/2 complex PHD finger containing protein Phf2" ;
chromosome1 GeneDB mRNA 2842244 2842922 . - . mRNA SPAC3F10.12c ; db_xref "SPD:06/06G04" ; systematic_id "SPAC3F10.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100204 ||| term=human TFEC ortholog; date=20100204" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0032569; gene-specific transcription from RNA polymerase II promoter" ; gene "SPAC3F10.12c" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB mRNA 2389981 2391853 . + . mRNA SPAC22H10.10 ; systematic_id "SPAC22H10.10" ; colour "2" ; gene "alp21 ||| sto1 ||| SPAC22H10.10" ; Alias "alp21" ; db_xref "SPD:35/35D11" ; synonym "sto1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10341216; date=19700101 ||| term=orthologous to S. cerevisiae YER007W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006457; alpha-tubulin folding
GO:0007023; post-chaperonin tubulin folding pathway
GO:0043014; alpha-tubulin binding
GO:0043014; alpha-tubulin binding
GO:0005515; protein binding
GO:0005515; protein binding" ; primary_name "alp21" ; product "tubulin specific chaperone cofactor E" ;
chromosome1 GeneDB mRNA 4755007 4760096 . + . mRNA SPAC1782.01 ; systematic_id "SPAC1782.01" ; colour "2" ; db_xref "SPD:48/48G11" ; Alias "ecm29" ; synonym "SPAPYUG7.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YHL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000502; proteasome complex (sensu Eukaryota)
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle
GO:0000502; proteasome complex" ; primary_name "ecm29" ; product "proteasome component Ecm29" ; reserved_name "ecm29" ;
chromosome1 GeneDB mRNA 3322678 3324816 . - . mRNA SPAC2E1P5.01c ; systematic_id "SPAC2E1P5.01c" ; colour "2" ; gene "mns1 ||| SPAPB1E7.13c ||| SPAC2E1P5.01c" ; Alias "mns1" ; db_xref "SPD:50/50H04" ; synonym "SPAPB1E7.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR131W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004571; mannosyl-oligosaccharide 1,2-alpha- mannosidase activity
GO:0006487; protein amino acid N-linked glycosylation
GO:0005789; endoplasmic reticulum membrane
GO:0005509; calcium ion binding" ; primary_name "mns1" ; product "mannosyl-oligosaccharide 1,2-alpha-mannosidase" ;
chromosome1 GeneDB mRNA 843233 844097 . + . mRNA SPAC521.02 ; db_xref "SPD:43/43E02" ; systematic_id "SPAC521.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR134W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0016925; protein sumoylation
GO:0006974; response to DNA damage stimulus
GO:0008270; zinc ion binding" ; gene "SPAC521.02" ; product "WLM domain protein" ;
chromosome1 GeneDB mRNA 431430 433203 . - . mRNA SPAC13C5.05c ; db_xref "SPD:34/34E04" ; systematic_id "SPAC13C5.05c" ; colour "7" ; GO "GO:0004610; phosphoacetylglucosamine mutase activity
GO:0006045; N-acetylglucosamine biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC13C5.05c" ; product "N-acetylglucosamine-phosphate mutase (predicted)" ; EC_number "5.4.2.3" ;
chromosome1 GeneDB mRNA 1383924 1385130 . - . mRNA SPAC57A10.11c ; systematic_id "SPAC57A10.11c" ; colour "7" ; gene "tim40 ||| SPAC57A10.11c" ; Alias "tim40" ; db_xref "SPD:15/15A01" ; GO "GO:0042721; mitochondrial inner membrane protein insertion complex
GO:0045041; protein import into mitochondrial intermembrane space" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CHCH domain; date=19700101 ||| term=orthologous to S. cerevisiae YKL195W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tim40" ; product "TIM22 inner membrane protein import complex subunit Tim40 (predicted)" ;
chromosome1 GeneDB mRNA 3336520 3337227 . - . mRNA SPAC26A3.03c ; systematic_id "SPAC26A3.03c" ; colour "7" ; gene "rmi1 ||| SPAC26A3.03c" ; Alias "rmi1" ; db_xref "SPD:08/08D03" ; GO "GO:0031422; RecQ helicase-Topo III complex
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006974; response to DNA damage stimulus
GO:0007062; sister chromatid cohesion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15889139; date=19700101 ||| term=orthologous to S. cerevisiae YPL024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rmi1" ; product "RecQ mediated genome instability protein Rmi1 (predicted)" ; reserved_name "rmi1" ;
chromosome1 GeneDB mRNA 5028331 5030426 . - . mRNA SPAC22E12.06c ; systematic_id "SPAC22E12.06c" ; colour "2" ; gene "gmh3 ||| SPAC22E12.06c" ; Alias "gmh3" ; db_xref "SPD:14/14F03" ; GO "GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0006487; protein amino acid N-linked glycosylation
GO:0042125; protein amino acid galactosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "gmh3" ; product "alpha-1,2-galactosyltransferase Gmh3" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB mRNA 2942389 2946085 . + . mRNA SPAPB2C8.01 ; systematic_id "SPAPB2C8.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=GLEYA domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; colour "10" ; gene "SPAPB2C8.01" ; product "cell surface glycoprotein (predicted)" ; note "3kb of 36 AA repeat" ;
chromosome1 GeneDB mRNA 2954983 2955350 . - . mRNA SPAPB24D3.05c ; pseudo "_no_value" ; systematic_id "SPAPB24D3.05c" ; controlled_curation "term=warning, possible horizontal transfer; date=20100919" ; colour "13" ; gene "SPAPB24D3.05c" ; product "ring cleavage dioxygenase, pseudogene, single frameshift and no methionine" ;
chromosome1 GeneDB mRNA 4970821 4972238 . + . mRNA SPAC1952.03 ; systematic_id "SPAC1952.03" ; colour "2" ; db_xref "SPD:15/15C07" ; Alias "otu2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human OTUD6A and OTUD6B ortholog; date=20100420 ||| term=name description, OTU family; cv=name_description; date=20080908" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005737; cytoplasm" ; primary_name "otu2" ; product "ubiquitin specific cysteine protease, OTU family, Otu2" ;
chromosome1 GeneDB mRNA 2064853 2066004 . - . mRNA SPAC3C7.02c ; db_xref "SPD:18/18B09" ; systematic_id "SPAC3C7.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR086C and YPL004C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0032126; eisosome
GO:0005741; mitochondrial outer membrane
GO:0004860; protein kinase inhibitor activity
GO:0034605; cellular response to heat
GO:0006897; endocytosis" ; gene "SPAC3C7.02c" ; product "protein kinase inhibitor associated with endocytosis (predicted)" ;
chromosome1 GeneDB mRNA 2606133 2607340 . + . mRNA SPAC823.14 ; systematic_id "SPAC823.14" ; colour "10" ; gene "SPAC823.14" ; note "human and mouse family members annotated as phosphoethanolamine/phosphocholine phosphatase 3.1.3.75 and pyridoxal phopshatase 3.1.3.74" ; Alias "ptf1" ; db_xref "SPD:14/14G08" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016791; phophatase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL010W; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20090618 ||| term=species distribution, conserved in Metazoa; date=20090618 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618 ||| term=species distribution, conserved in Vertebrates; date=20090618" ; primary_name "ptf1" ; product "phosphoric monoester hydrolase (predicted)" ; reserved_name "ptf1" ; EC_number "3.1.3.-" ;
chromosome1 GeneDB mRNA 4675839 4677448 . + . mRNA SPAC144.12 ; systematic_id "SPAC144.12" ; colour "7" ; gene "SPAC144.12" ; note "Pentose phosphate shunt enzymes are cytoplasmic (Bohringer Biochemical Pathways)" ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00710; ||| SPD:10/10F08" ; GO "GO:0009052; pentose-phosphate shunt, non-oxidative branch
GO:0004751; ribose-5-phosphate isomerase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "ribose 5-phosphate isomerase (predicted)" ; EC_number "5.3.1.6" ;
chromosome1 GeneDB mRNA 3437021 3438117 . - . mRNA SPAC3H5.04 ; systematic_id "SPAC3H5.04" ; colour "7" ; gene "aar2 ||| SPAC3H5.04" ; Alias "aar2" ; db_xref "SPD:49/49A01" ; GO "GO:0000244; assembly of spliceosomal tri-snRNP
GO:0005682; snRNP U5" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "aar2" ; product "U5 snRNP-associated protein Aar2 (predicted)" ;
chromosome1 GeneDB mRNA 1926661 1927818 . + . mRNA SPAP14E8.04 ; Alias "oma1" ; systematic_id "SPAP14E8.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0004222; metalloendopeptidase activity
GO:0006515; misfolded or incompletely synthesized protein catabolism" ; gene "oma1 ||| SPAP14E8.04" ; primary_name "oma1" ; product "metallopeptidase Oma1 (predicted)" ;
chromosome1 GeneDB mRNA 3860907 3862735 . - . mRNA SPAC1071.03c ; db_xref "SPD:15/15B04" ; systematic_id "SPAC1071.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1071.03c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3966775 3968132 . + . mRNA SPAC11G7.03 ; systematic_id "SPAC11G7.03" ; colour "2" ; gene "idh1 ||| glu3 ||| SPAC11G7.03" ; Alias "idh1" ; db_xref "KEGG:MAP00020; ||| SPD:16/16E04" ; synonym "glu3" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006102; isocitrate metabolism
GO:0006537; glutamate biosynthesis
GO:0004449; isocitrate dehydrogenase (NAD+) activity
GO:0005759; mitochondrial matrix" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL037C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "idh1" ; product "isocitrate dehydrogenase (NAD+) subunit 1 Idh1" ; EC_number "1.1.1.41" ;
chromosome1 GeneDB mRNA 2665634 2667267 . + . mRNA SPAC4F8.07c ; systematic_id "SPAC4F8.07c" ; colour "2" ; gene "hxk2 ||| SPAC4F8.07c" ; Alias "hxk2" ; db_xref "SPD:21/21B10" ; GO "GO:0008865; fructokinase activity
GO:0004340; glucokinase activity
GO:0019158; mannokinase activity
GO:0006002; fructose 6-phosphate metabolism
GO:0051156; glucose 6-phosphate metabolism
GO:0006013; mannose metabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression repressed by glucose; db_xref=PMID:8549830; cv=gene_ex; date=20061122 ||| term=orthologous to S. cerevisiae YCL040W|YDR516C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hxk2" ; product "hexokinase 2" ; EC_number "2.7.1.1 ||| 2.7.1.4 ||| 2.7.1.7 ||| 2.7.1.2" ;
chromosome1 GeneDB mRNA 1935352 1935797 . + . mRNA SPAC3H1.03 ; systematic_id "SPAC3H1.03" ; colour "10" ; gene "SPAC3H1.03 ||| mug151" ; Alias "mug151" ; db_xref "SPD:03/03G08" ; GO "GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mug151" ; product "mouse transcriptional regulator, HCNGP-like (predicted)" ;
chromosome1 GeneDB mRNA 1044955 1046660 . + . mRNA SPAC23C4.10 ; systematic_id "SPAC23C4.10" ; colour "7" ; gene "sec2 ||| SPAC23C4.10" ; Alias "sec2" ; db_xref "SPD:25/25E02" ; GO "GO:0005085; guanyl-nucleotide exchange factor activity
GO:0006886; intracellular protein transport
GO:0006887; exocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL272C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "sec2" ; product "guanyl-nucleotide exchange factor Sec2 (predicted)" ;
chromosome1 GeneDB mRNA 911252 911692 . - . mRNA SPAC1687.06c ; systematic_id "SPAC1687.06c" ; colour "7" ; gene "rpl44 ||| rpl28 ||| SPAC1687.06c" ; Alias "rpl44" ; db_xref "SPD:03/03B03" ; synonym "rpl28" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome" ; primary_name "rpl44" ; product "60S ribosomal protein L28/L44 (predicted)" ;
chromosome1 GeneDB mRNA 407780 409817 . - . mRNA SPAC31A2.11c ; systematic_id "SPAC31A2.11c" ; colour "2" ; gene "cuf1 ||| SPAC31A2.11c" ; db_xref "SPD:19/19G01" ; Alias "cuf1" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005507; copper ion binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0006879; iron ion homeostasis
GO:0010553; negative regulation of gene-specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of gene-specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR021C and YGL166W and YPR008W; date=19700101 ||| term=complementation, functionally complements S. cerevisiae MAC1; cv=complementation; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17477863; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=DNA binding specificity, binds CuSE 5'-[ACT]T[ACT]NNGCTG[AGT]-3'; db_xref=PMID:10593913|PMID:11278870; date=20091231 ||| term=gene expression, transcriptionally regulates ctr4; qualifier=activates; db_xref=PMID:10593913; cv=gene_ex; date=20091231 ||| term=protein sequence feature, NLS; db_xref=PMID:16467469; cv=sequence_feature; residue=11-53; date=20091231 ||| term=protein sequence feature, copper binding region; residue=328-342; evidence=IMP; db_xref=PMID:16467469; date=20091231 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:16467469; cv=localization; date=20091231" ; primary_name "cuf1" ; product "nutritional copper sensing transcription factor Cuf1" ;
chromosome1 GeneDB mRNA 4856792 4860032 . - . mRNA SPAC4F10.13c ; systematic_id "SPAC4F10.13c" ; colour "2" ; gene "mpd2 ||| SPAC4F10.13c" ; Alias "mpd2" ; db_xref "SPD:30/30A04" ; GO "GO:0005737; cytoplasm
GO:0006406; mRNA export from nucleus
GO:0006888; ER to Golgi vesicle mediated transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YBR172C and YPL105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mpd2" ; product "GYF domain protein" ;
chromosome1 GeneDB mRNA 4427514 4428838 . - . mRNA SPAC16.03c ; systematic_id "SPAC16.03c" ; colour "7" ; gene "ura2 ||| SPAC16.03c" ; Alias "ura2" ; db_xref "KEGG:MAP00240; ||| SPD:17/17A08" ; GO "GO:0006221; pyrimidine nucleotide biosynthesis
GO:0004151; dihydroorotase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR420W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "ura2" ; product "dihydroorotase Ura2 (predicted)" ; EC_number "3.5.2.3" ;
chromosome1 GeneDB mRNA 5136083 5137276 . + . mRNA SPAC29A4.06c ; db_xref "SPD:17/17E01" ; systematic_id "SPAC29A4.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CCDC50 ortholog; date=20100704" ; colour "10" ; gene "SPAC29A4.06c" ; product "human CCDC55 ortholog" ;
chromosome1 GeneDB mRNA 774000 776062 . - . mRNA SPAC4G8.07c ; db_xref "SPD:27/27E04" ; systematic_id "SPAC4G8.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0030696; tRNA (m5U54) methyltransferase activity
GO:0030488; tRNA methylation" ; gene "SPAC4G8.07c" ; product "tRNA (m5U54) methyltransferase Trm2 (predicted)" ;
chromosome1 GeneDB mRNA 510521 511346 . - . mRNA SPAC227.08c ; systematic_id "SPAC227.08c" ; colour "2" ; gene "yth1 ||| SPAC227.08c" ; Alias "yth1" ; db_xref "SPD:07/07F09" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YPR107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "yth1" ; product "mRNA cleavage and polyadenylation specificity factor complex Yth1" ;
chromosome1 GeneDB mRNA 2996304 2997058 . + . mRNA SPAC31G5.06 ; db_xref "SPD:03/03G03" ; systematic_id "SPAC31G5.06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR116W; date=20080901 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005739; mitochondrion" ; colour "10" ; gene "SPAC31G5.06" ; product "mitochondrial protein" ; note "orthology prediction pers. comm. Charly Chahwan" ;
chromosome1 GeneDB mRNA 2326332 2326634 . - . mRNA SPAC6C3.03c ; db_xref "SPD:01/01D09" ; systematic_id "SPAC6C3.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC6C3.03c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1826160 1827061 . - . mRNA SPAC1002.15c ; systematic_id "SPAC1002.15c" ; colour "2" ; gene "pmc5 ||| SPAC1002.15c ||| med6" ; Alias "pmc5" ; db_xref "SPD:12/12D05" ; synonym "med6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR058C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016592; mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex" ; primary_name "pmc5" ; product "mediator complex subunit Pmc5" ;
chromosome1 GeneDB mRNA 5529962 5530960 . - . mRNA SPAC186.02c ; db_xref "SPD:14/14F04" ; systematic_id "SPAC186.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC186.07C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=20070719 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "10" ; gene "SPAC186.02c" ; product "hydroxyacid dehydrogenase (predicted)" ;
chromosome1 GeneDB mRNA 973950 976756 . - . mRNA SPAC222.14c ; db_xref "SPD:29/29D05" ; systematic_id "SPAC222.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR165W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005525; GTP binding
GO:0016044; membrane organization and biogenesis
GO:0005737; cytoplasm
GO:0016192; vesicle-mediated transport" ; gene "SPAC222.14c" ; product "GTP binding protein Sey1 (predicted)" ;
chromosome1 GeneDB mRNA 3639860 3642338 . + . mRNA SPAC1142.08 ; systematic_id "SPAC1142.08" ; colour "2" ; gene "fhl1 ||| SPAC1142.08 ||| SPAC8C9.01" ; Alias "fhl1" ; db_xref "SPD:38/38A12" ; synonym "SPAC8C9.01" ; GO "GO:0006355; regulation of transcription, DNA- dependent
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15777722; date=19700101 ||| term=fork head domain; date=19700101 ||| term=orthologous to S. cerevisiae YPR104C; attribution=R. Bulmer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DNA binding specificity, binds Homol E; qualifier=predicted; date=20100312 ||| term=DNA binding specificity, binds Homol D; qualifier=predicted; date=20100312" ; primary_name "fhl1" ; product "fork head transcription factor Fhl1" ; reserved_name "fhl1" ;
chromosome1 GeneDB mRNA 5016020 5017829 . - . mRNA SPAC890.07c ; systematic_id "SPAC890.07c" ; colour "2" ; gene "rmt1 ||| prmt1 ||| SPAC890.07c" ; Alias "rmt1" ; db_xref "SPD:36/36B04" ; synonym "prmt1" ; GO "GO:0005634; nucleus
GO:0016274; protein-arginine N-methyltransferase activity
GO:0006406; mRNA export from nucleus
GO:0019919; peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Pab2; db_xref=PMID:17213188; date=20100826" ; primary_name "rmt1" ; product "type I protein arginine N-methyltransferase Rmt1" ; EC_number "2.1.1.-" ;
chromosome1 GeneDB mRNA 2351150 2353352 . - . mRNA SPAC17G8.06c ; db_xref "SPD:36/36D06" ; systematic_id "SPAC17G8.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR016C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004160; dihydroxy-acid dehydratase activity
GO:0005739; mitochondrion
GO:0009097; isoleucine biosynthesis
GO:0009099; valine biosynthesis
GO:0006551; leucine metabolism" ; gene "SPAC17G8.06c" ; product "dihydroxy-acid dehydratase (predicted)" ; EC_number "4.2.1.9" ;
chromosome1 GeneDB mRNA 2790199 2791221 . - . mRNA SPAC1805.09c ; systematic_id "SPAC1805.09c" ; colour "7" ; gene "fmt1 ||| SPAC1805.09c" ; Alias "fmt1" ; db_xref "SPD:15/15C11" ; GO "GO:0005739; mitochondrion
GO:0004479; methionyl-tRNA formyltransferase activity
GO:0006431; methionyl-tRNA aminoacylation
GO:0006413; translational initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fmt1" ; product "methionyl-tRNA formyltransferase Fmt1 (predicted)" ;
chromosome1 GeneDB mRNA 4529389 4531031 . - . mRNA SPAC27D7.11c ; db_xref "SPD:51/51D08" ; systematic_id "SPAC27D7.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAC27D7.09c and SPBC3D6.02 (paralogs); date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070723 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC27D7.11c" ; product "But2 family protein" ;
chromosome1 GeneDB mRNA 2014206 2016313 . - . mRNA SPAC17H9.06c ; db_xref "SPD:37/37A09" ; systematic_id "SPAC17H9.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to C. neoformans CNBK2480; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0005634; nucleus" ; gene "SPAC17H9.06c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 3372781 3374209 . - . mRNA SPAC8E11.10 ; db_xref "SPD:09/09E05" ; systematic_id "SPAC8E11.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=related to S. pombe SPCC1739.08C and SPAC22A12.17C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0032115; sorbose reductase activity
GO:0019311; sorbose metabolic process" ; gene "SPAC8E11.10" ; product "sorbose reductase (predicted)" ; EC_number "1.1.1.289" ;
chromosome1 GeneDB mRNA 3658123 3659050 . - . mRNA SPAC8C9.10c ; db_xref "SPD:05/05F09" ; systematic_id "SPAC8C9.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL082C; qualifier=N_term; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0042273; ribosomal large subunit biogenesis and assembly
GO:0005730; nucleolus" ; gene "SPAC8C9.10c" ; product "ribosome biogenesis protein Rrp14-N (predicted)" ;
chromosome1 GeneDB mRNA 3113565 3114412 . - . mRNA SPAC688.02c ; systematic_id "SPAC688.02c" ; colour "2" ; gene "mis14 ||| SPAC688.02c" ; Alias "mis14" ; db_xref "SPD:11/11A09" ; GO "GO:0000818; MIND complex
GO:0031617; NMS complex
GO:0000777; condensed chromosome kinetochore
GO:0000779; condensed chromosome, pericentric region
GO:0000939; inner kinetochore of condensed chromosome
GO:0005634; nucleus
GO:0005515; protein binding
GO:0031055; chromatin remodeling at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0019236; response to pheromone" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL233W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis14" ; product "kinetochore protein Mis14" ;
chromosome1 GeneDB mRNA 198884 199231 . + . mRNA SPAC13G6.13 ; db_xref "SPD:02/02B05" ; systematic_id "SPAC13G6.13" ; synonym "SPAC24B11.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; date=20100606" ; colour "8" ; gene "SPAC13G6.13 ||| SPAC24B11.02" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2671968 2673122 . - . mRNA SPAC4F8.03 ; systematic_id "SPAC4F8.03" ; colour "7" ; gene "sdo1 ||| SPAC4F8.03 ||| SPAC644.01c" ; Alias "sdo1" ; db_xref "SPD:13/13B01" ; synonym "SPAC644.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Shwachman- Bodian-Diamond syndrome; date=19700101 ||| term=orthologous to S. cerevisiae YLR022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human SBDS ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0030687; nucleolar preribosome, large subunit precursor
GO:0000054; ribosome export from nucleus
GO:0042273; ribosomal large subunit biogenesis and assembly" ; primary_name "sdo1" ; product "SBDS family ribosome maturation protein Sdo1 (predicted)" ;
chromosome1 GeneDB mRNA 4095149 4096622 . + . mRNA SPAC23A1.10 ; systematic_id "SPAC23A1.10" ; colour "2" ; Alias "tef102" ; db_xref "SPD:21/21D07" ; obsolete_name "tef1-b ||| tef1-d ||| ef1a-d ||| SPBC24E9.15c" ; synonym "ef1a-b" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation
GO:0005853; eukaryotic translation elongation factor 1 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR080W and YBR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tef102" ; product "translation elongation factor EF-1 alpha Ef1a-b" ;
chromosome1 GeneDB mRNA 3459233 3462098 . - . mRNA SPAC3A11.06 ; systematic_id "SPAC3A11.06" ; colour "7" ; gene "mvp1 ||| SPAC3A11.06" ; Alias "mvp1" ; db_xref "SPD:38/38F12" ; GO "GO:0035091; phosphoinositide binding
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0006623; protein targeting to vacuole" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mvp1" ; product "sorting nexin Mvp1 (predicted)" ;
chromosome1 GeneDB mRNA 1991670 1993046 . - . mRNA SPAC9G1.11c ; systematic_id "SPAC9G1.11c" ; colour "2" ; gene "spn4 ||| SPAC9G1.11c" ; Alias "spn4" ; db_xref "SPD:18/18A09" ; GO "GO:0005525; GTP binding
GO:0005940; septin ring
GO:0031105; septin complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15385632; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; date=20100727 ||| term=orthologous to S. cerevisiae YHR107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spn4" ; product "septin Spn4" ;
chromosome1 GeneDB mRNA 3655144 3656142 . + . mRNA SPAC8C9.08 ; systematic_id "SPAC8C9.08" ; colour "7" ; gene "rps5 ||| SPAC8C9.08" ; Alias "rps5" ; db_xref "SPD:31/31H12" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rps5" ; product "40S ribosomal protein S5 (predicted)" ;
chromosome1 GeneDB mRNA 1946682 1949101 . - . mRNA SPAC3H1.09c ; systematic_id "SPAC3H1.09c" ; colour "2" ; gene "SPAC3H1.09c" ; Alias "avt3" ; db_xref "SPD:46/46E10" ; GO "GO:0032974; amino acid export from vacuole
GO:0000329; vacuolar membrane
GO:0015171; amino acid transmembrane transporter activity
GO:0034639; amino acid efflux transmembrane transporter activity
GO:0006995; cellular response to nitrogen starvation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL146W and YNL101W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sporulation defects; allele=SPAC3H1.09|SPBC16H5.07|SPAC2G11. 13|leucine_auxotroph; qualifier=triple_mutant; db_xref=PMID:19778961; date=20091126 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "avt3" ; product "vacuolar amino acid efflux transporter Avt3" ;
chromosome1 GeneDB mRNA 4321808 4323207 . - . mRNA SPAC27F1.04c ; systematic_id "SPAC27F1.04c" ; colour "2" ; gene "nuf2 ||| SPAC27F1.04c" ; Alias "nuf2" ; db_xref "SPD:23/23A09" ; GO "GO:0031617; NMS complex
GO:0031262; Ndc80 complex
GO:0000778; condensed nuclear chromosome kinetochore
; condensed nuclear chromosome kinetochore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0000070; mitotic sister chromatid segregation
GO:0007094; mitotic spindle checkpoint" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YOL069W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nuf2" ; product "spindle pole body protein Nuf2" ;
chromosome1 GeneDB mRNA 2706276 2707193 . - . mRNA SPAPB2B4.01c ; Alias "gpi12" ; systematic_id "SPAPB2B4.01c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR281W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0000225; N- acetylglucosaminylphosphatidylinositol deacetylase activity
GO:0005789; endoplasmic reticulum membrane" ; gene "gpi12 ||| SPAPB2B4.01c" ; primary_name "gpi12" ; product "pig-L, N-acetylglucosaminylphosphatidyl inositoldeacetylase (predicted)" ; EC_number "3.5.1.-" ;
chromosome1 GeneDB mRNA 4050929 4052357 . + . mRNA SPAC19G12.05 ; db_xref "SPD:11/11H03" ; systematic_id "SPAC19G12.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR291C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=19700101" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006843; mitochondrial citrate transport
GO:0005371; tricarboxylate carrier activity" ; gene "SPAC19G12.05" ; product "mitochondrial citrate transporter (predicted)" ;
chromosome1 GeneDB mRNA 1603976 1605116 . + . mRNA SPAC23H4.03c ; systematic_id "SPAC23H4.03c" ; colour "7" ; gene "erv25 ||| SPAC23H4.03c" ; Alias "erv25" ; db_xref "SPD:09/09G08" ; GO "GO:0030134; ER to Golgi transport vesicle
GO:0006888; ER to Golgi vesicle-mediated transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "erv25" ; product "COPII-coated vesicle component Erv25 (predicted)" ;
chromosome1 GeneDB mRNA 1457143 1457895 . - . mRNA SPAC9.02c ; db_xref "SPD:06/06E08" ; systematic_id "SPAC9.02c" ; colour "7" ; GO "GO:0004059; aralkylamine N-acetyltransferase activity
GO:0004145; diamine N-acetyltransferase activity
GO:0006595; polyamine metabolism
GO:0006325; establishment and/or maintenance of chromatin architecture" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR071C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC9.02c" ; product "polyamine N-acetyltransferase (predicted)" ; EC_number "2.3.1.87" ;
chromosome1 GeneDB mRNA 244485 245698 . + . mRNA SPAC806.05 ; db_xref "SPD:42/42A09" ; systematic_id "SPAC806.05" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=ACN9 family; date=20100820" ; colour "10" ; gene "SPAC806.05" ; product "mitochondrial ANC9 family protein" ;
chromosome1 GeneDB mRNA 5388367 5389571 . + . mRNA SPAC3G6.05 ; db_xref "SPD:43/43C11" ; systematic_id "SPAC3G6.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR251W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006067; ethanol metabolism
GO:0005743; mitochondrial inner membrane
GO:0000002; mitochondrial genome maintenance" ; gene "SPAC3G6.05" ; product "Mvp17/PMP22 family protein 1 (predicted)" ;
chromosome1 GeneDB mRNA 3727360 3728136 . + . mRNA SPAC15E1.06 ; systematic_id "SPAC15E1.06" ; colour "2" ; gene "vps29 ||| SPAC15E1.06" ; Alias "vps29" ; db_xref "SPD:42/42F04" ; GO "GO:0030904; retromer complex
GO:0030904; retromer complex
GO:0006886; intracellular protein transport
GO:0030437; sporulation (sensu Fungi)
GO:0016787; hydrolase activity
GO:0042147; retrograde transport, endosome to Golgi
GO:0005768; endosome
GO:0005768; endosome" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "vps29" ; product "retromer complex subunit Vps29" ;
chromosome1 GeneDB mRNA 5383803 5385561 . - . mRNA SPAC3G6.03c ; db_xref "SPD:18/18G08" ; systematic_id "SPAC3G6.03c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=human c2orf76 ortholog; date=20100718" ; colour "10" ; gene "SPAC3G6.03c" ; product "Maf-like protein" ;
chromosome1 GeneDB mRNA 3913590 3915471 . - . mRNA SPAC323.05c ; db_xref "SPD:11/11F09" ; systematic_id "SPAC323.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0008276; protein methyltransferase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006417; regulation of translation
GO:0035657; eRF1 methyl transferase complex" ; gene "SPAC323.05c" ; product "protein methyltransferase Mtq2 (predicted)" ;
chromosome1 GeneDB mRNA 4081483 4083493 . - . mRNA SPAC23A1.02c ; db_xref "SPD:22/22D11" ; systematic_id "SPAC23A1.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL039W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0006888; ER to Golgi vesicle-mediated transport" ; gene "SPAC23A1.02c" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome1 GeneDB mRNA 5221387 5221719 . - . mRNA SPAC19D5.10c ; db_xref "SPD:52/52C01" ; systematic_id "SPAC19D5.10c" ; colour "6" ; gene "SPAC19D5.10c" ; product "dubious" ;
chromosome1 GeneDB mRNA 3532280 3533547 . - . mRNA SPAC16E8.17c ; systematic_id "SPAC16E8.17c" ; colour "7" ; gene "SPAC16E8.17c" ; note "due to inconsistencies between the annotation of the proposed S. cerevisiae ortholog LSC1 in SWISSPROT:P53598 and SGD:S0005668 succinate-CoA ligase (GDP-forming)/6.2.1.4 and succinate-CoA ligase (ADP- forming) repectively, conservatively annotated to EC 6.2.1.- and GO:0004774, succinate-CoA ligase activity" ; db_xref "KEGG:MAP00020; ||| SPD:14/14E07" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006104; succinyl-CoA metabolism
GO:0005739; mitochondrion
GO:0004774; succinate-CoA ligase activity
GO:0042709; succinate-CoA ligase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR142W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; product "succinate-CoA ligase alpha subunit (predicted)" ; EC_number "6.2.1.-" ;
chromosome1 GeneDB mRNA 3619183 3620668 . - . mRNA SPAC17G6.15c ; db_xref "SPD:20/20E07" ; systematic_id "SPAC17G6.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR271C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0006812; cation transport
GO:0005371; tricarboxylate carrier activity
GO:0006839; mitochondrial transport" ; gene "SPAC17G6.15c" ; product "MTC tricarboxylate transporter (predicted)" ;
chromosome1 GeneDB mRNA 4825257 4826099 . - . mRNA SPAC20G4.06c ; systematic_id "SPAC20G4.06c" ; colour "2" ; gene "adf1 ||| cof1 ||| SPAC20G4.06c" ; Alias "adf1" ; db_xref "SPD:07/07B10" ; synonym "cof1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cofilin/tropomyosin family; date=19700101 ||| term=orthologous to S. cerevisiae YLL050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Actin Depolymerizing Factor; cv=name_description; date=20091208 ||| term=name description, Cofilin; cv=name_description; date=20091208" ; GO "GO:0003779; actin binding
GO:0030042; actin filament depolymerization
GO:0030479; actin cortical patch
GO:0000915; cytokinesis, contractile ring formation
GO:0071519; actin filament bundle assembly involved in actomyosin contractile ring formation" ; primary_name "adf1" ; product "actin depolymerizing factor, cofilin" ;
chromosome1 GeneDB mRNA 2239393 2240546 . - . mRNA SPAC18G6.12c ; systematic_id "SPAC18G6.12c" ; colour "12" ; gene "SPAC18G6.12c" ; obsolete_name "B22918-1" ; db_xref "SPD:13/13A04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, identified in S. pombe only; date=20081110" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; product "hypothetical protein" ;
chromosome1 GeneDB mRNA 1221177 1224863 . - . mRNA SPAC10F6.09c ; systematic_id "SPAC10F6.09c" ; colour "2" ; gene "psm3 ||| smc3 ||| SPAC10F6.09c" ; Alias "psm3" ; db_xref "SPD:39/39B08" ; synonym "smc3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11069892; date=19700101 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=phenotype, spindle elongation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=protein sequence feature, coiled-coil; date=19700101 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YJL074C; date=19700101 ||| term=modification, acetylated; cv=pt_mod; evidence=ISS; date=20080807 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=disease associated, Cornelia de Lange syndrome; date=20090213 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000794; condensed nuclear chromosome
GO:0030892; mitotic cohesin complex
GO:0000790; nuclear chromatin
GO:0016887; ATPase activity
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0007064; mitotic sister chromatid cohesion
GO:0016567; protein ubiquitination" ; primary_name "psm3" ; product "mitotic cohesin complex subunit Psm3" ;
chromosome1 GeneDB mRNA 5007016 5008857 . - . mRNA SPAC890.04c ; db_xref "SPD:35/35B12" ; systematic_id "SPAC890.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR272W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0015630; microtubule cytoskeleton
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0016043; cellular component organization and biogenesis
GO:0042254; ribosome biogenesis" ; gene "SPAC890.04c" ; product "ribosome biogenesis protein Ytm1 (predicted)" ;
chromosome1 GeneDB mRNA 790884 792233 . - . mRNA SPAC16C9.01c ; systematic_id "SPAC16C9.01c" ; colour "10" ; gene "SPAC4G8.14c ||| SPAC16C9.01c" ; Alias "SPAC4G8.14c" ; db_xref "SPD:22/22C06" ; synonym "SPAC4G8.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR019W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "SPAC4G8.14c" ; product "carbohydrate kinase (predicted)" ;
chromosome1 GeneDB mRNA 5314828 5315379 . + . mRNA SPAC11E3.15 ; systematic_id "SPAC11E3.15" ; colour "7" ; db_xref "SPD:04/04A11" ; Alias "rpl22" ; synonym "SPAP8A3.01" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=orthologous to S. cerevisiae YLR061W and YFL034C-A; date=19700101 ||| term=human RPL22 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; primary_name "rpl22" ; product "60S ribosomal protein L22 (predicted)" ;
chromosome1 GeneDB mRNA 5135423 5135863 . - . mRNA SPAC29A4.07 ; systematic_id "SPAC29A4.07" ; colour "2" ; gene "srb6 ||| med22 ||| SPAC29A4.07" ; Alias "srb6" ; db_xref "SPD:03/03C01" ; synonym "med22" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR253W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=human MED22 ortholog; date=20110113 ||| term=species distribution, conserved in Vertebrates; date=20110113 ||| term=species distribution, conserved in Metazoa; date=20110113" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex" ; primary_name "srb6" ; product "mediator complex subunit Srb6" ;
chromosome1 GeneDB mRNA 5408386 5411023 . - . mRNA SPAC29B12.02c ; systematic_id "SPAC29B12.02c" ; colour "2" ; gene "set2 ||| SPAC29B12.02c" ; Alias "set2" ; db_xref "SPD:28/28F02" ; synonym "kmt3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YJL168C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human SETD2 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; GO "GO:0046975; histone lysine N-methyltransferase activity (H3-K36 specific)
GO:0016571; histone methylation
GO:0000790; nuclear chromatin
; DNA-directed RNA polymerase II, core complex
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "set2" ; product "histone lysine methyltransferase Set2" ;
chromosome1 GeneDB mRNA 2040860 2041514 . - . mRNA SPAC607.03c ; systematic_id "SPAC607.03c" ; colour "2" ; gene "snu13 ||| SPAC607.03c" ; Alias "snu13" ; db_xref "SPD:05/05C08" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snu13" ; product "U3 snoRNP-associated protein Snu13" ;
chromosome1 GeneDB mRNA 2984786 2986009 . + . mRNA SPAPB1A11.03 ; systematic_id "SPAPB1A11.03" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0004460; L-lactate dehydrogenase (cytochrome) activity
GO:0034599; cellular response to oxidative stress
GO:0006089; lactate metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML054C (C-term); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPAPB1A11.03" ; product "cytochrome b2 (L-lactate cytochrome-c oxidoreductase) (predicted)" ; EC_number "1.1.2.3" ;
chromosome1 GeneDB mRNA 3549682 3551856 . + . mRNA SPAC17A2.01 ; systematic_id "SPAC17A2.01" ; colour "2" ; gene "SPAC1B1.05 ||| SPAC17A2.01 ||| bsu1" ; Alias "bsu1" ; db_xref "SPD:45/45C01" ; synonym "sod1 ||| car1 ||| SPAC1B1.05 ||| bsu1" ; GO "GO:0005887; integral to plasma membrane
GO:0005886; plasma membrane
GO:0031925; pyridoxal transmembrane transporter activity
GO:0031927; pyridoxamine transmembrane transporter activity
GO:0031928; pyridoxine transmembrane transporter activity
GO:0015234; thiamin transmembrane transporter activity
GO:0031920; pyridoxal transport
GO:0031922; pyridoxamine transport
GO:0031923; pyridoxine transport
GO:0071934; thiamin transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=gene expression, transcriptionally repressed by thiamine; cv=gene_ex; db_xref=PMID:8675019; date=19700101 ||| term=phenotype, resistance to amorilide; qualifier=deletion; cv=phenotype; db_xref=PMID:8246883; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPCC576.17c and SPCC965.13; date=19700101 ||| term=name description, Changed Amorilide Resistance; db_xref=PMID:8246883; cv=name_description; date=20091016 ||| term=name description, vitamin B Six Uptake; db_xref=PMID:15701794; cv=name_description; date=20091016 ||| term=warning, gene name conflict; cv=warning; date=20091016 ||| term=warning, S. cerevisiae PN uptake is mediated by the unrelated transporter Tpn1p; cv=warning; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "bsu1" ; product "high-affinity import carrier for pyridoxine, pyridoxal, and pyridoxamine Bsu1" ;
chromosome1 GeneDB mRNA 3887139 3888516 . + . mRNA SPAC926.03 ; systematic_id "SPAC926.03" ; colour "2" ; gene "rlc1 ||| SPAC926.03" ; Alias "rlc1" ; db_xref "SPD:05/05F10" ; GO "GO:0017022; myosin binding
GO:0017022; myosin binding
GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0005509; calcium ion binding
GO:0016460; myosin II complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11069761; date=19700101 ||| term=orthologous to S. cerevisiae YPR188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rlc1" ; product "myosin II regulatory light chain Rlc1" ;
chromosome1 GeneDB mRNA 3924654 3925694 . + . mRNA SPAC2F3.02 ; db_xref "SPD:06/06C04" ; systematic_id "SPAC2F3.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR292C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0006620; posttranslational protein targeting to membrane
GO:0005789; endoplasmic reticulum membrane
GO:0031207; Sec62/Sec63 complex" ; gene "SPAC2F3.02" ; product "ER protein translocation subcomplex subunit Sec72 (predicted)" ;
chromosome1 GeneDB mRNA 3982702 3985104 . - . mRNA SPAPB18E9.04c ; systematic_id "SPAPB18E9.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303" ; GO "GO:0009986; cell surface" ; colour "8" ; gene "SPAPB18E9.04c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 5545615 5546613 . - . mRNA SPAC186.07c ; db_xref "SPD:14/14F05" ; systematic_id "SPAC186.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC186.02C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=20070913 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "10" ; gene "SPAC186.07c" ; product "hydroxyacid dehydrogenase (predicted)" ;
chromosome1 GeneDB mRNA 957561 958606 . - . mRNA SPAC222.08c ; db_xref "SPD:08/08C08" ; systematic_id "SPAC222.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR095C and YNL334C and YFL060C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0008615; pyridoxine biosynthesis" ; gene "SPAC222.08c" ; product "glutamine aminotransferease subunit (predicted)" ;
chromosome1 GeneDB mRNA 1306439 1309121 . + . mRNA SPAC1565.08 ; systematic_id "SPAC1565.08" ; colour "2" ; gene "cdc48 ||| SPAC1565.08 ||| SPAC6F12.01" ; Alias "cdc48" ; db_xref "SPD:29/29A12" ; synonym "SPAC6F12.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDL126C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005789; endoplasmic reticulum membrane
GO:0000790; nuclear chromatin
GO:0016887; ATPase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030433; ER-associated protein catabolism
GO:0033047; regulation of mitotic sister chromatid segregation
GO:0033047; regulation of mitotic sister chromatid segregation
GO:0007346; mitotic cell cycle
GO:0033554; cellular response to stress
GO:0030970; retrograde protein transport, ER to cytosol
GO:0051230; spindle disassembly
GO:0006511; ubiquitin-dependent protein catabolism
GO:0006906; vesicle fusion
GO:0034098; Cdc48-Npl4-Ufd1 AAA ATPase complex
GO:0061166; establishment of endoplasmic reticulum localization involved in endoplasmic reticulum polarization
GO:0005515; protein binding" ; primary_name "cdc48" ; product "AAA family ATPase Cdc48" ;
chromosome1 GeneDB mRNA 1711170 1711940 . + . mRNA SPAC664.05 ; systematic_id "SPAC664.05" ; colour "7" ; gene "rpl13 ||| SPAC664.05" ; Alias "rpl13" ; db_xref "SPD:07/07B05" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL082W and YMR142C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl13" ; product "60S ribosomal protein L13 (predicted)" ;
chromosome1 GeneDB mRNA 4282644 4284516 . - . mRNA SPAC2C4.14c ; systematic_id "SPAC2C4.14c" ; colour "2" ; gene "ppk11 ||| SPAC2C4.14c" ; Alias "ppk11" ; db_xref "SPD:13/13B09" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=GCK subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YDR523C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk11" ; product "PAK-related kinase Ppk11" ;
chromosome1 GeneDB mRNA 2823765 2825581 . + . mRNA SPAC3F10.04 ; systematic_id "SPAC3F10.04" ; colour "2" ; gene "gsa1 ||| gsh2 ||| SPAC3F10.04" ; Alias "gsa1" ; db_xref "SPD:24/24C01" ; synonym "gsh2" ; GO "GO:0004363; glutathione synthase activity
GO:0006750; glutathione biosynthesis
GO:0046938; phytochelatin biosynthesis
GO:0033554; cellular response to stress
GO:0071276; cellular response to cadmium ion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:12787490; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YOL049W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=subunit composition, homodimeric; cv=subunit_composition; db_xref=PMID:12734194; date=20091223 ||| term=subunit composition, heterotetrameric; cv=subunit_composition; db_xref=PMID:12734194; date=20091223 ||| term=modification, proteolytic cleavage; cv=pt_mod; db_xref=PMID:12734194; date=20091223 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "gsa1" ; product "glutathione synthetase large subunit Gsa1" ; EC_number "6.3.2.3" ;
chromosome1 GeneDB mRNA 2416766 2418144 . - . mRNA SPAC6B12.04c ; systematic_id "SPAC6B12.04c" ; colour "7" ; gene "SPAC6B12.04c" ; note "no other genes of the kynurenine pathway (de novo synthesis of NAD+ from tryptophan) can be identified in S. pombe the arylformamidase activity molecular function was not included in the annotation inference." ; db_xref "SPD:20/20C04" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0008483; transaminase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "aminotransferase class I and II (predicted)" ; EC_number "2.6.1.-" ;
chromosome1 GeneDB mRNA 5479853 5480485 . + . mRNA SPAC922.04 ; db_xref "SPD:02/02C10" ; systematic_id "SPAC922.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC922.04" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 357510 359051 . - . mRNA SPAC630.07c ; db_xref "SPD:22/22D09" ; systematic_id "SPAC630.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC630.07c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2184865 2185551 . - . mRNA SPAC13F5.07c ; db_xref "SPD:01/01F08" ; systematic_id "SPAC13F5.07c" ; colour "10" ; controlled_curation "term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; GO "GO:0034599; cellular response to oxidative stress" ; gene "SPAC13F5.07c" ; product "zf PARP type zinc finger protein" ;
chromosome1 GeneDB mRNA 1756109 1757315 . + . mRNA SPAC17A5.03 ; systematic_id "SPAC17A5.03" ; colour "2" ; gene "rpl301 ||| rpl3-1 ||| rpl3 ||| SPAC17A5.03" ; note "identical to rpl302 except AA78,V-I PMID:8181745" ; Alias "rpl301" ; db_xref "SPD:18/18D09" ; synonym "rpl3-1 ||| rpl3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0000027; ribosomal large subunit assembly and maintenance" ; primary_name "rpl301" ; product "60S ribosomal protein L3" ;
chromosome1 GeneDB mRNA 3395217 3398701 . - . mRNA SPAC959.05c ; systematic_id "SPAC959.05c" ; colour "7" ; gene "SPAC959.06c ||| SPAC959.05c" ; note "gene stucture updated ||| merged SPAC959.06c & SPAC959.05c, pers. comm. Charly Chahwan, splicing is tentative" ; Alias "SPAC959.06c" ; obsolete_name "SPAC959.06c" ; db_xref "SPD:36/36A05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=thioredoxin family; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0003756; protein disulfide isomerase activity
GO:0006621; protein retention in ER" ; primary_name "SPAC959.06c" ; product "protein disulfide isomerase (predicted)" ;
chromosome1 GeneDB mRNA 4042034 4044600 . - . mRNA SPAC19G12.01c ; systematic_id "SPAC19G12.01c" ; colour "2" ; gene "cut20 ||| lid1 ||| SPAPJ698.04c ||| SPAC19G12.01c ||| apc4" ; Alias "cut20" ; db_xref "SPD:46/46H03" ; synonym "lid1 ||| apc4 ||| SPAPJ698.04c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; allele=lid1-26; db_xref=PMID:10082519; date=20100727 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005680; anaphase-promoting complex
GO:0005515; protein binding
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0016567; protein ubiquitination
GO:0030071; regulation of mitotic metaphase/anaphase transition" ; primary_name "cut20" ; product "anaphase-promoting complex subunit Apc4" ;
chromosome1 GeneDB mRNA 1681802 1684385 . + . mRNA SPAC343.19 ; systematic_id "SPAC343.19" ; colour "7" ; gene "SPAC343.19 ||| SPAC824.01 ||| lsb6" ; Alias "lsb6" ; db_xref "SPD:46/46A08" ; synonym "SPAC824.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL100W; date=19700101 ||| term=human PI4KII and PI4K2B ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0007015; actin filament organization
GO:0004430; 1-phosphatidylinositol 4-kinase activity
GO:0005737; cytoplasm
GO:0016020; membrane
GO:0046854; phosphoinositide phosphorylation" ; primary_name "lsb6" ; product "1-phosphatidylinositol 4-kinase Lsb6 (predicted)" ; EC_number "2.7.1.67" ;
chromosome1 GeneDB mRNA 1575375 1576200 . + . mRNA SPAC23H4.18c ; systematic_id "SPAC23H4.18c" ; colour "2" ; gene "rbx1 ||| pip1 ||| SPAC23H4.18c" ; Alias "rbx1" ; db_xref "SPD:42/42E02" ; synonym "pip1" ; GO "GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0031465; Cul4B-RING ubiquitin ligase complex
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YOL133W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pop- Interacting Protein; cv=name_description; date=20090729 ||| term=name description, RING-BoX protein; cv=name_description; date=20090729" ; primary_name "rbx1" ; product "RING-box protein 1" ;
chromosome1 GeneDB mRNA 5031784 5033228 . + . mRNA SPAC22E12.07 ; systematic_id "SPAC22E12.07" ; colour "2" ; gene "rna1 ||| SPAC22E12.07" ; Alias "rna1" ; db_xref "SPD:18/18C11" ; GO "GO:0005737; cytoplasm
GO:0005737; cytoplasm
GO:0031965; nuclear membrane
GO:0031965; nuclear membrane
GO:0005096; GTPase activator activity
GO:0005098; Ran GTPase activator activity
GO:0031291; regulation of Ran GTPase activity
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0051383; kinetochore organization and biogenesis
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8374168; date=19700101 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR235C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rna1" ; product "Ran GAP Rna1" ;
chromosome1 GeneDB mRNA 1630900 1631203 . - . mRNA SPAP27G11.11c ; systematic_id "SPAP27G11.11c" ; controlled_curation "term=warning, below 100 amino acid size threshold; cv=warning; date=19700101" ; colour "6" ; gene "SPAP27G11.11c" ; product "dubious" ;
chromosome1 GeneDB mRNA 1450031 1451353 . - . mRNA SPAC3A12.16c ; systematic_id "SPAC3A12.16c" ; colour "7" ; gene "tim17 ||| SPAC3A12.16c" ; Alias "tim17" ; db_xref "SPD:06/06A04" ; GO "GO:0015450; protein translocase activity
GO:0030150; protein import into mitochondrial matrix
GO:0005744; mitochondrial inner membrane presequence translocase complex
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tim17" ; product "TIM23 translocase complex subunit Tim17 (predicted)" ;
chromosome1 GeneDB mRNA 4653068 4654387 . + . mRNA SPAC144.02 ; systematic_id "SPAC144.02" ; colour "2" ; gene "SPAC144.02 ||| fyy1 ||| iec1" ; Alias "iec1" ; db_xref "SPD:09/09B07" ; synonym "iec1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; primary_name "iec1" ; product "Ino80 complex subunit Iec1" ;
chromosome1 GeneDB mRNA 1140621 1142002 . + . mRNA SPAC56F8.09 ; systematic_id "SPAC56F8.09" ; colour "7" ; gene "rrp8 ||| SPAC56F8.09" ; Alias "rrp8" ; db_xref "SPD:13/13E06" ; GO "GO:0008168; methyltransferase activity
GO:0006364; rRNA processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR083W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rrp8" ; product "rRNA methyltransferase Rrp8 (predicted)" ;
chromosome1 GeneDB mRNA 3191447 3196838 . - . mRNA SPAC1486.04c ; systematic_id "SPAC1486.04c" ; colour "2" ; gene "alm1 ||| SPAC1486.04c" ; Alias "alm1" ; db_xref "SPD:34/34B07" ; GO "GO:0032153; cell division site
GO:0031097; medial ring
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:10660053; qualifier=deletion; cv=phenotype; date=20060222 ||| term=phenotype, sporulation defects; db_xref=PMID:10660053; qualifier=deletion; cv=phenotype; date=20060222 ||| term=phenotype, spores produced smaller colonies; db_xref=PMID:10660053; qualifier=deletion; cv=phenotype; date=20060222 ||| term=protein sequence feature, coiled-coil; db_xref=PMID:10660053; date=20060222 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10660053; date=20060222 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "alm1" ; product "medial ring protein Alm1" ;
chromosome1 GeneDB mRNA 5360572 5361537 . - . mRNA SPAC4D7.06c ; db_xref "SPD:13/13G03" ; systematic_id "SPAC4D7.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR213W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0019354; siroheme biosynthesis
GO:0004325; ferrochelatase activity
GO:0043115; precorrin-2 dehydrogenase activity
GO:0000103; sulfate assimilation" ; gene "SPAC4D7.06c" ; product "siroheme synthase (predicted)" ; EC_number "1.3.1.76 ||| 4.99.1.4" ;
chromosome1 GeneDB mRNA 5498273 5498965 . - . mRNA SPAC869.08 ; systematic_id "SPAC869.08" ; colour "10" ; gene "SPAC869.08 ||| pcm2" ; Alias "pcm2" ; db_xref "SPD:08/08A11" ; GO "GO:0004719; protein-L-isoaspartate (D-aspartate) O- methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Protein Carboxyl Methyltransferase; date=20100301 ||| term=human PCMT1 ortholog; date=20100715" ; primary_name "pcm2" ; product "protein-L-isoaspartate O-methyltransferase Pcm2 (predicted)" ; EC_number "2.1.1.77" ; reserved_name "pcm2" ;
chromosome1 GeneDB mRNA 819787 821766 . - . mRNA SPAC2G11.07c ; systematic_id "SPAC2G11.07c" ; colour "2" ; gene "ptc3 ||| SPAC2G11.07c" ; note "protein phosphatase 2c homolog 3" ; Alias "ptc3" ; db_xref "SPD:25/25A02" ; GO "GO:0006470; protein amino acid dephosphorylation
GO:0004722; protein phosphatase type 2C activity
GO:0000173; inactivation of MAPK activity during osmolarity sensing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER089C and YBL056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Protein Phosphatase 2C homolog; date=20101124 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:7859738; date=20101126" ; primary_name "ptc3" ; EC_number "3.1.3.16" ;
chromosome1 GeneDB mRNA 2800665 2802041 . - . mRNA SPAC1805.16c ; db_xref "SPD:13/13C10" ; systematic_id "SPAC1805.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0004731; purine-nucleoside phosphorylase activity
GO:0006152; purine nucleoside catabolic process
GO:0034356; NAD biosynthesis via nicotinamide riboside salvage pathway" ; colour "7" ; gene "SPAC1805.16c" ; product "purine nucleoside phosphorylase (predicted)" ;
chromosome1 GeneDB mRNA 1240321 1241690 . - . mRNA SPAC10F6.17c ; systematic_id "SPAC10F6.17c" ; colour "7" ; gene "SPAC56E4.01c ||| SPAC10F6.17c" ; Alias "SPAC56E4.01c" ; db_xref "SPD:20/20F08" ; synonym "SPAC56E4.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR090C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005739; mitochondrion
GO:0004741; [pyruvate dehydrogenase (lipoamide)] phosphatase activity
GO:0016311; dephosphorylation
GO:0006091; generation of precursor metabolites and energy" ; primary_name "SPAC56E4.01c" ; product "mitochondrial pyruvate dehydrogenase (lipoamide) phosphatase (predicted)" ; EC_number "3.1.3.43 ||| 3.1.3.16" ;
chromosome1 GeneDB mRNA 2131895 2132615 . - . mRNA SPAC20H4.11c ; systematic_id "SPAC20H4.11c" ; colour "2" ; gene "rho5 ||| SPAC20H4.11c" ; Alias "rho5" ; db_xref "SPD:41/41E07" ; GO "GO:0032153; cell division site
GO:0051286; cell tip
GO:0031520; plasma membrane of cell tip
GO:0005886; plasma membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0030100; regulation of endocytosis
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Rho family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16146630; date=19700101 ||| term=orthologous to S. cerevisiae YPR165W; date=19700101 ||| term=modification, prenylated; cv=pt_mod; qualifier=predicted; db_xref=PMID:16146630; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; qualifier=predicted; db_xref=PMID:16146630; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rho5" ; product "Rho family GTPase Rho5" ;
chromosome1 GeneDB mRNA 2397450 2398188 . - . mRNA SPAC15F9.01c ; db_xref "SPD:43/43A09" ; systematic_id "SPAC15F9.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20080202 ||| term=orthologous to S. cerevisiae YGL060W and YBR216C; date=20080116" ; colour "10" ; gene "SPAC15F9.01c" ; product "central kinetochore associated family protein" ;
chromosome1 GeneDB mRNA 4780688 4781734 . + . mRNA SPAC11H11.04 ; systematic_id "SPAC11H11.04" ; colour "2" ; gene "mam2 ||| SPAC11H11.04" ; Alias "mam2" ; db_xref "SPD:15/15H10" ; GO "GO:0000750; pheromone-dependent signal transduction during conjugation with cellular fusion
GO:0004932; mating-type factor pheromone receptor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YFL026W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1657593; date=20070716 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mam2" ; product "pheromone p-factor receptor" ;
chromosome1 GeneDB mRNA 939871 941889 . - . mRNA SPAC1687.20c ; systematic_id "SPAC1687.20c" ; colour "2" ; gene "mis6 ||| SPAC1687.20c" ; Alias "mis6" ; db_xref "SPD:27/27E07" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000779; condensed chromosome, pericentric region
GO:0000939; inner kinetochore of condensed chromosome
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034080; DNA replication-independent nucleosome assembly at centromere
GO:0051382; kinetochore assembly
GO:0034501; protein localization to kinetochore
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0000819; sister chromatid segregation
GO:0007052; mitotic spindle organization" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR381W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CENP-I ortholog; date=20090422 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis6" ; product "inner centromere protein, CENP-I ortholog Mis6" ;
chromosome1 GeneDB mRNA 483137 485015 . - . mRNA SPAC24H6.04 ; systematic_id "SPAC24H6.04" ; colour "2" ; gene "hxk1 ||| SPAC24H6.04" ; Alias "hxk1" ; db_xref "SPD:23/23D11" ; GO "GO:0004396; hexokinase activity
GO:0006096; glycolysis
GO:0008865; fructokinase activity
GO:0019158; mannokinase activity
GO:0004340; glucokinase activity
GO:0006002; fructose 6-phosphate metabolism
GO:0006013; mannose metabolism
GO:0051156; glucose 6-phosphate metabolism
GO:0005524; ATP binding
GO:0009051; pentose-phosphate shunt, oxidative branch" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression repressed by glucose; db_xref=PMID:8549830; cv=gene_ex; date=20061122 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:9666312; date=20061127 ||| term=orthologous to S. cerevisiae YFR053C and YGL253W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complements S. cerevisiae HXK1; db_xref=PMID:8549830; date=20101012" ; primary_name "hxk1" ; product "hexokinase 1" ; EC_number "2.7.1.1 ||| 2.7.1.4 ||| 2.7.1.7 ||| 2.7.1.2" ;
chromosome1 GeneDB mRNA 4279873 4281433 . - . mRNA SPAC2C4.12c ; db_xref "SPD:43/43G05" ; systematic_id "SPAC2C4.12c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL102C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, possible gene merge, unusual domain combination; date=20100927" ; colour "7" ; GO "GO:0006388; tRNA splicing
GO:0000215; tRNA 2'-phosphotransferase activity
GO:0005634; nucleus" ; gene "SPAC2C4.12c" ; product "tRNA 2'-phosphotransferase Tpt1 (predicted)" ;
chromosome1 GeneDB mRNA 1342122 1344818 . - . mRNA SPAC6F12.15c ; systematic_id "SPAC6F12.15c" ; colour "2" ; gene "cut9 ||| SPAC6F12.15c ||| dre1" ; Alias "cut9" ; db_xref "SPD:37/37D09" ; synonym "dre1" ; GO "GO:0005680; anaphase-promoting complex
GO:0005515; protein binding
GO: SF new; regulation of DNA-dependent DNA replication
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0008054; cyclin catabolism
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:15466421; date=20100727 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=name description, Defect in REreplication; db_xref=PMID:15466421; cv=name_description; date=20100126" ; primary_name "cut9" ; product "anaphase-promoting complex subunit Cut9" ;
chromosome1 GeneDB mRNA 3885465 3886477 . - . mRNA SPAC926.10 ; Alias "new9" ; systematic_id "SPAC926.10" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "new9" ; gene "SPAC926.10" ; product "sequence orphan" ; note "check conservation" ;
chromosome1 GeneDB mRNA 782142 783634 . - . mRNA SPAC4G8.11c ; systematic_id "SPAC4G8.11c" ; colour "7" ; gene "atp10 ||| SPAC4G8.11c" ; Alias "atp10" ; db_xref "SPD:14/14G05" ; GO "GO:0031305; integral to mitochondrial inner membrane
GO:0032592; integral to mitochondrial membrane
GO:0005743; mitochondrial inner membrane
GO:0051082; unfolded protein binding
GO:0033615; mitochondrial proton-transporting ATP synthase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR393W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atp10" ; product "F1-F0 ATPase assembly protein (predicted)" ;
chromosome1 GeneDB mRNA 1138566 1139117 . + . mRNA SPAC56F8.07 ; db_xref "SPD:35/35A12" ; systematic_id "SPAC56F8.07" ; controlled_curation "term=orthologous to S. cerevisiae YLR050C; date=20080205 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=human tMEM97 ortholog; date=20100718" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0031227; intrinsic to endoplasmic reticulum membrane" ; colour "10" ; gene "SPAC56F8.07" ; product "conserved eukaryotic ER membrane protein" ;
chromosome1 GeneDB mRNA 2781197 2783133 . + . mRNA SPAC1805.05 ; systematic_id "SPAC1805.05" ; colour "2" ; gene "cki3 ||| SPAC1805.05" ; Alias "cki3" ; db_xref "SPD:33/33B03" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0030100; regulation of endocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CK2 subfamily; qualifier=predicted; db_xref=PMID:9651503; date=19700101 ||| term=orthologous to S. cerevisiae YNL154C and YHR135C and YER123W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cki3" ; product "serine/threonine protein kinase Cki3" ; EC_number "2.7.1.-" ;
chromosome1 GeneDB mRNA 4813225 4817740 . - . mRNA SPAC20G4.02c ; systematic_id "SPAC20G4.02c" ; colour "2" ; gene "fus1 ||| SPAC20G4.02c" ; Alias "fus1" ; db_xref "SPD:30/30F08" ; GO "GO:0032220; plasma membrane fusion during cytogamy
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0003779; actin binding
GO:0005937; mating projection
GO:0051017; actin cable formation
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL271C and YIL159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fus1" ; product "formin Fus1" ;
chromosome1 GeneDB mRNA 1146833 1148017 . + . mRNA SPAC56F8.12 ; db_xref "SPD:18/18G10" ; systematic_id "SPAC56F8.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; colour "10" ; gene "SPAC56F8.12" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 2418694 2419791 . - . mRNA SPAC6B12.05c ; systematic_id "SPAC6B12.05c" ; colour "2" ; gene "ies2 ||| SPAC6B12.05c" ; Alias "ies2" ; db_xref "SPD:12/12A05" ; GO "GO:0005634; nucleus
GO:0006338; chromatin remodeling
GO:0016585; chromatin remodeling complex
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL215W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ies2" ; product "Ino80 complex subunit Ies2" ;
chromosome1 GeneDB mRNA 4622166 4635415 . - . mRNA SPAC1093.06c ; systematic_id "SPAC1093.06c" ; colour "2" ; gene "dhc1 ||| SPAC1093.06c ||| SPAC30C2.01c" ; Alias "dhc1" ; db_xref "SPD:50/50A02" ; synonym "SPAC30C2.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR054C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=AAA family ATPase; date=20081222" ; GO "GO:0030981; cortical microtubule cytoskeleton
GO:0005868; cytoplasmic dynein complex
GO:0005881; cytoplasmic microtubule
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0008569; minus-end-directed microtubule motor activity
GO:0030989; horsetail nuclear movement
GO:0007131; meiotic recombination
GO:0000743; nuclear migration during conjugation with cellular fusion
GO:0032871; regulation of karyogamy
GO:0030437; sporulation (sensu Fungi)
GO:0007129; synapsis
GO:0030989; horsetail nuclear movement
GO:0031134; sister chromatid biorientation" ; primary_name "dhc1" ; product "dynein heavy chain Dhc1" ;
chromosome1 GeneDB mRNA 5439793 5441990 . - . mRNA SPAC29B12.14c ; db_xref "SPD:45/45G04" ; systematic_id "SPAC29B12.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR021W and YIR028W and YBL042C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0015505; uracil permease activity
GO:0015857; uracil transport
GO:0005886; plasma membrane" ; gene "SPAC29B12.14c" ; product "purine transporter (predicted)" ;
chromosome1 GeneDB mRNA 818025 819675 . + . mRNA SPAC2G11.06 ; systematic_id "SPAC2G11.06" ; colour "7" ; gene "vps4 ||| SPAC2G11.06" ; Alias "vps4" ; db_xref "SPD:24/24H04" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport
GO:0045053; protein retention in Golgi" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YPR173C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps4" ; product "AAA family ATPase Vps4 (predicted)" ;
chromosome1 GeneDB mRNA 2385749 2387441 . + . mRNA SPAC22H10.08 ; db_xref "SPD:24/24H05" ; systematic_id "SPAC22H10.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101" ; colour "10" ; gene "SPAC22H10.08" ; product "DUF2009 protein" ;
chromosome1 GeneDB mRNA 2241013 2241357 . + . mRNA SPAC18G6.13 ; db_xref "SPD:02/02B03" ; systematic_id "SPAC18G6.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC18G6.13" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1638643 1639499 . + . mRNA SPAP27G11.15 ; Alias "slx1" ; systematic_id "SPAP27G11.15" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14528010; date=19700101 ||| term=orthologous to S. cerevisiae YBR228W; date=19700101 ||| term=localization rDNA protrusions; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=catalytic activity, active site mapping; residue=R34|E74; db_xref=PMID:14528010; cv=cat_act; date=20091216" ; GO "GO:0033557; Slx1-Slx4 complex
GO:0030874; nucleolar chromatin
GO:0016894; endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'- phosphomonoesters
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0043007; maintenance of rDNA
GO:0045458; recombination within rDNA repeats
GO:0034065; replication fork processing at rDNA locus" ; gene "slx1 ||| SPAP27G11.15" ; primary_name "slx1" ; product "structure-specific endonuclease catalytic subunit" ;
chromosome1 GeneDB mRNA 2177582 2178505 . - . mRNA SPAC13F5.04c ; db_xref "SPD:12/12H02" ; systematic_id "SPAC13F5.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR181C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005768; endosome
GO:0005771; multivesicular body
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; gene "SPAC13F5.04c" ; product "endosomal sorting protein (predicted)" ;
chromosome1 GeneDB mRNA 492426 497870 . + . mRNA SPAPB21F2.02 ; systematic_id "SPAPB21F2.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR141C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006895; Golgi to endosome transport
GO:0008360; regulation of cell shape
GO:0007029; endoplasmic reticulum organization and biogenesis" ; gene "SPAPB21F2.02" ; product "Dopey family protein (predicted)" ;
chromosome1 GeneDB mRNA 2913403 2913705 . + . mRNA SPAC513.04 ; db_xref "SPD:01/01D10" ; systematic_id "SPAC513.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC513.04" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3204094 3205821 . + . mRNA SPAC1486.06 ; db_xref "SPD:19/19F05" ; systematic_id "SPAC1486.06" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004516; nicotinate phosphoribosyltransferase activity
GO:0019358; nicotinate nucleotide salvage
GO:0005634; nucleus" ; gene "SPAC1486.06" ; product "nicotinate phosphoribosyltransferase (predicted)" ; EC_number "2.4.2.11" ;
chromosome1 GeneDB mRNA 3721257 3721816 . - . mRNA SPAC15E1.02c ; db_xref "SPD:03/03H01" ; systematic_id "SPAC15E1.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC15E1.02c" ; product "DUF1761 family protein" ;
chromosome1 GeneDB mRNA 334631 336131 . + . mRNA SPAC12G12.07c ; db_xref "SPD:22/22C08" ; systematic_id "SPAC12G12.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa B19C19.110; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC12G12.07c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 3141443 3143101 . + . mRNA SPAC688.14 ; systematic_id "SPAC688.14" ; colour "2" ; gene "SPAC688.14" ; Alias "set13" ; db_xref "SPD:25/25B03" ; GO "GO:0016279; protein-lysine N-methyltransferase activity
GO:0005634; nucleus
GO:0006479; protein amino acid methylation
GO:0043555; regulation of translation in response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YDR257C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Rpl42; qualifier=methylates; evidence=IDA; db_xref=PMID:20444689; date=20100628" ; primary_name "set13" ; product "ribosome L32 lysine methyltransferase Set13" ;
chromosome1 GeneDB mRNA 3163136 3164354 . + . mRNA SPAC3G9.10c ; systematic_id "SPAC3G9.10c" ; colour "7" ; gene "ski6 ||| SPAC3G9.10c" ; Alias "ski6" ; db_xref "SPD:12/12A06" ; GO "GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0000175; 3'-5'-exoribonuclease activity
GO:0006364; 35S primary transcript processing
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR195W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "ski6" ; product "exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted)" ;
chromosome1 GeneDB mRNA 3814549 3815393 . - . mRNA SPAC1F12.06c ; db_xref "SPD:22/22A11" ; systematic_id "SPAC1F12.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004519; endonuclease activity
GO:0006281; DNA repair" ; colour "7" ; gene "SPAC1F12.06c" ; product "DNA repair endonuclease (predicted)" ;
chromosome1 GeneDB mRNA 2350408 2351019 . + . mRNA SPAC17G8.05 ; systematic_id "SPAC17G8.05" ; colour "2" ; gene "SPAC17G8.05 ||| med20" ; Alias "med20" ; db_xref "SPD:42/42D11" ; GO "GO:0016592; mediator complex
GO:0005634; nucleus
GO:0016455; RNA polymerase II transcription mediator activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0006366; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:18310102; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR041C; db_xref=PMID:15175151; date=20070706 ||| term=phenotype, septation defects; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=phenotype, colony morphology, flocculation; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TRFP ortholog; date=20110113" ; primary_name "med20" ; product "mediator complex subunit Med20" ;
chromosome1 GeneDB mRNA 1068660 1069982 . + . mRNA SPAC1A6.02 ; systematic_id "SPAC1A6.02" ; colour "7" ; gene "SPAC23C4.21 ||| SPAC1A6.02" ; Alias "SPAC23C4.21" ; db_xref "SPD:16/16H04" ; synonym "SPAC23C4.21" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR169W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0042274; ribosome small subunit biogenesis" ; primary_name "SPAC23C4.21" ; product "WD repeat protein, human WDR55 family, involved in ribosome biogenesis (predicted)" ;
chromosome1 GeneDB mRNA 3115713 3116867 . - . mRNA SPAC688.04c ; systematic_id "SPAC688.04c" ; colour "2" ; gene "gst3 ||| SPAC688.04c" ; Alias "gst3" ; db_xref "SPD:08/08F09" ; GO "GO:0034599; cellular response to oxidative stress
GO:0042493; response to drug
GO:0004364; glutathione transferase activity
GO:0005737; cytoplasm
GO:0004602; glutathione peroxidase activity
GO:0042803; protein homodimerization activity
GO:0019430; removal of superoxide radicals" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=thioredoxin family; date=20081111 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "gst3" ; product "glutathione S-transferase Gst3" ; EC_number "2.5.1.18" ;
chromosome1 GeneDB mRNA 3820643 3821466 . - . mRNA SPAC1F12.10c ; db_xref "SPD:07/07F02" ; systematic_id "SPAC1F12.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR073C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0020037; heme binding
GO:0042168; heme metabolism
GO:0003958; NADPH-hemoprotein reductase activity" ; gene "SPAC1F12.10c" ; product "NADPH-hemoprotein reductase (predicted)" ;
chromosome1 GeneDB mRNA 4448030 4449517 . - . mRNA SPAC9E9.07c ; systematic_id "SPAC9E9.07c" ; colour "2" ; gene "ypt2 ||| SPAC9E9.07c" ; Alias "ypt2" ; db_xref "SPD:31/31F06" ; GO "GO:0006887; exocytosis
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006886; intracellular protein transport
GO:0006906; vesicle fusion
GO:0006893; Golgi to plasma membrane transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Ypt subfamily; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:2328721; date=19700101 ||| term=orthologous to S. cerevisiae YFL005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ypt2" ; product "GTPase Ypt2" ;
chromosome1 GeneDB mRNA 4131447 4133480 . - . mRNA SPAC26H5.07c ; db_xref "SPD:26/26E10" ; systematic_id "SPAC26H5.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL039W and YHL017W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004872; receptor activity
GO:0007166; cell surface receptor linked signal transduction
GO:0005887; integral to plasma membrane" ; gene "SPAC26H5.07c" ; product "seven transmembrane receptor protein (predicted)" ;
chromosome1 GeneDB mRNA 753677 755655 . + . mRNA SPAC22G7.10 ; db_xref "SPD:17/17F12" ; systematic_id "SPAC22G7.10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR093C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human FIP1L1 ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; GO "GO:0005847; mRNA cleavage and polyadenylation specificity factor complex
GO:0006378; mRNA polyadenylation
GO:0006379; mRNA cleavage" ; gene "SPAC22G7.10" ; product "mRNA cleavage and polyadenylation specificity factor complex subunit, Fip1 homolog (predicted)" ;
chromosome1 GeneDB mRNA 2009437 2011855 . - . mRNA SPAC17H9.04c ; db_xref "SPD:36/36F05" ; systematic_id "SPAC17H9.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-ranBP; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YDL167C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC17H9.04c" ; product "RNA-binding protein" ;
chromosome1 GeneDB mRNA 4484835 4485994 . - . mRNA SPAC17C9.08 ; systematic_id "SPAC17C9.08" ; colour "2" ; gene "pnu1 ||| SPAC17C9.08 ||| nuc1 ||| end1" ; Alias "pnu1" ; db_xref "SPD:44/44A10" ; synonym "nuc1 ||| end1" ; GO "GO:0004520; endodeoxyribonuclease activity
GO:0004529; exodeoxyribonuclease activity
GO:0006308; DNA catabolism
GO:0006310; DNA recombination
GO:0006401; RNA catabolism
GO:0005743; mitochondrial inner membrane
GO:0006995; cellular response to nitrogen starvation
GO:0005739; mitochondrion
GO:0004518; nuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL208C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:18488015; date=20080502" ; primary_name "pnu1" ; product "mitochondrial endodeoxyribonuclease Pnu1" ; EC_number "3.1.30.-" ;
chromosome1 GeneDB mRNA 1136313 1137906 . - . mRNA SPAC56F8.06c ; systematic_id "SPAC56F8.06c" ; colour "7" ; gene "alg10 ||| SPAC56F8.06c" ; Alias "alg10" ; db_xref "SPD:44/44D02" ; GO "GO:0004583; dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR227W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "alg10" ; product "dolichyl-phosphate-glucose-glycolipid alpha- glucosyltransferase Alg10 (predicted)" ;
chromosome1 GeneDB mRNA 1433938 1434842 . + . mRNA SPAC3A12.07 ; systematic_id "SPAC3A12.07" ; colour "2" ; gene "rpb11 ||| SPAC3A12.07" ; Alias "rpb11" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:04/04B11" ; GO "GO:0006366; transcription from RNA polymerase II promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0003677; DNA binding
GO:0005665; DNA-directed RNA polymerase II, core complex
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpb11" ; product "RNA polymerase II complex subunit Rpb11" ;
chromosome1 GeneDB mRNA 1382425 1383535 . - . mRNA SPAC57A10.10c ; systematic_id "SPAC57A10.10c" ; colour "2" ; gene "sla1 ||| SPAC57A10.10c" ; Alias "sla1" ; db_xref "SPD:13/13H03" ; GO "GO:0031137; regulation of conjugation with cellular fusion
GO:0003723; RNA binding
GO:0008033; tRNA processing
GO:0005634; nucleus
GO:0034307; regulation of ascospore formation
GO:0042779; removal of tRNA 3'-trailer sequence
GO:0006386; transcription termination from RNA polymerase III promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9404894; date=19700101 ||| term=target of Mei3; qualifier=indirect; db_xref=PMID:14665462; date=19700101 ||| term=target is Mei2; qualifier=indirect; db_xref=PMID:14665462; date=19700101 ||| term=orthologous to S. cerevisiae YDL051W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:9404894; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sla1" ; product "La protein homolog" ;
chromosome1 GeneDB mRNA 981542 983481 . - . mRNA SPAC821.03c ; db_xref "SPD:23/23E05" ; systematic_id "SPAC821.03c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC821.03c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1961710 1965105 . - . mRNA SPAC3H1.12c ; systematic_id "SPAC3H1.12c" ; colour "2" ; gene "snt2 ||| SPAC3H1.12c" ; Alias "snt2" ; db_xref "SPD:48/48C03" ; GO "GO:0006338; chromatin remodeling
GO:0048189; Lid2 complex
GO:0000790; nuclear chromatin
GO:0006355; regulation of transcription, DNA- dependent
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=Myb family; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YGL131C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snt2" ; product "Lid2 complex subunit Snt2" ;
chromosome1 GeneDB mRNA 4993743 4994455 . - . mRNA SPAC1952.14c ; systematic_id "SPAC1952.14c" ; colour "7" ; gene "SPAC1952.14c ||| mrpl25" ; Alias "mrpl25" ; db_xref "SPD:03/03H02" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR076C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mrpl25" ; product "mitochondrial ribosomal protein subunit L25 (predicted)" ;
chromosome1 GeneDB mRNA 1028316 1029887 . + . mRNA SPAC139.05 ; db_xref "SPD:23/23H06" ; systematic_id "SPAC139.05" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, 4- hydroxybutyricaciduria; date=20060920 ||| term=orthologous to S. cerevisiae YBR006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0009013; succinate-semialdehyde dehydrogenase [NAD(P)+] activity
GO:0006538; glutamate catabolism" ; gene "SPAC139.05" ; product "succinate-semialdehyde dehydrogenase (predicted)" ; EC_number "1.2.1.16" ;
chromosome1 GeneDB mRNA 1623007 1624490 . - . mRNA SPAP27G11.09c ; systematic_id "SPAP27G11.09c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL033C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0009231; riboflavin biosynthesis
GO:0019238; cyclohydrolase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003935; GTP cyclohydrolase II activity" ; gene "SPAP27G11.09c" ; product "GTP cyclohydrolase (predicted)" ;
chromosome1 GeneDB mRNA 384185 385398 . + . mRNA SPAC1751.04 ; db_xref "SPD:51/51H12" ; systematic_id "SPAC1751.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1751.04" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3661145 3663178 . - . mRNA SPAC8C9.12c ; db_xref "SPD:12/12F05" ; systematic_id "SPAC8C9.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YJL133W and YKR052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005381; iron ion transmembrane transporter activity
GO:0034755; iron ion transport
GO:0005743; mitochondrial inner membrane
GO:0048250; mitochondrial iron ion transport
GO:0071805; potassium ion transmembrane transport
GO:0015992; proton transport" ; gene "SPAC8C9.12c" ; product "mitochondrial iron ion transporter (predicted)" ;
chromosome1 GeneDB mRNA 2754695 2756247 . + . mRNA SPAC6F6.12 ; db_xref "SPD:21/21B04" ; systematic_id "SPAC6F6.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YJL036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006623; protein targeting to vacuole
GO:0005737; cytoplasm
GO:0000407; pre-autophagosomal structure
GO:0005776; autophagic vacuole
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0032258; CVT pathway
GO:0034498; early endosome to Golgi transport
GO:0034727; piecemeal autophagy of nucleus" ; product "autophagy associated protein Atg24 (predicted)" ;
chromosome1 GeneDB mRNA 4937808 4938962 . - . mRNA SPAC1B3.06c ; db_xref "SPD:10/10H06" ; systematic_id "SPAC1B3.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827" ; colour "10" ; gene "SPAC1B3.06c" ; product "UbiE family methyltransferase (predicted)" ; note "possibly vitamin, cofactor or ergosterol metabolism" ;
chromosome1 GeneDB mRNA 1052875 1054468 . + . mRNA SPAC23C4.14 ; systematic_id "SPAC23C4.14" ; colour "7" ; gene "alg1 ||| SPAC23C4.14" ; Alias "alg1" ; db_xref "SPD:23/23H11" ; GO "GO:0006487; protein amino acid N-linked glycosylation
GO:0019187; beta-1,4-mannosyltransferase activity
GO:0006490; oligosaccharide-lipid intermediate assembly
GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR110W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "alg1" ; product "mannosyltransferase complex subunit Alg1 (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB mRNA 4338742 4339944 . + . mRNA SPAC23D3.02 ; systematic_id "SPAC23D3.02" ; colour "2" ; gene "rfc2 ||| SPAC23D3.02" ; Alias "rfc2" ; db_xref "SPD:16/16F02" ; GO "GO:0005663; DNA replication factor C complex
GO:0006270; DNA replication initiation
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0031390; Ctf18 RFC-like complex
GO:0031391; Elg1 RFC-like complex
GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0003689; DNA clamp loader activity
GO:0043596; nuclear relication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=AAA family ATPase; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9862966; date=19700101 ||| term=orthologous to S. cerevisiae YJR068W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rfc2" ; product "DNA replication factor C complex subunit Rfc2" ;
chromosome1 GeneDB mRNA 1285627 1286298 . + . mRNA SPAPB17E12.13 ; systematic_id "SPAPB17E12.13" ; colour "7" ; gene "rpl1802 ||| rpl18-2 ||| SPAPB17E12.13" ; Alias "rpl1802" ; synonym "rpl18-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL120C and YNL301C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl1802" ; product "60S ribosomal protein L18 (predicted)" ;
chromosome1 GeneDB mRNA 3430970 3435917 . + . mRNA SPAC3H5.06c ; systematic_id "SPAC3H5.06c" ; colour "2" ; db_xref "SPD:49/49H03" ; Alias "pol1" ; synonym "swi7 ||| polA" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, N syndrome; date=20060926 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8537450; date=19700101 ||| term=orthologous to S. cerevisiae YNL102W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=complementation, functionally complemented by S. cerevisiae YNL102W; db_xref=PMID:8537450; date=20100923" ; GO "GO:0005658; alpha DNA polymerase:primase complex
GO:0043596; nuclear replication fork
GO:0003688; DNA replication origin binding
GO:0003887; DNA-directed DNA polymerase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0006269; DNA replication, synthesis of RNA primer
GO:0000734; gene conversion at mating-type locus, DNA repair synthesis
GO:0000723; telomere maintenance" ; primary_name "pol1" ; product "DNA polymerase alpha catalytic subunit" ; EC_number "2.7.7.7" ;
chromosome1 GeneDB mRNA 3974310 3976079 . + . mRNA SPAPB18E9.01 ; Alias "trm5" ; systematic_id "SPAPB18E9.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR070W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030488; tRNA methylation
GO:0016423; tRNA (guanine) methyltransferase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "trm5 ||| SPAPB18E9.01" ; primary_name "trm5" ; product "tRNA (guanine) methyltransferase Trm5 (predicted)" ;
chromosome1 GeneDB mRNA 2596175 2597386 . - . mRNA SPAC823.10c ; db_xref "SPD:43/43F06" ; systematic_id "SPAC823.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YDL119C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0022857; transmembrane transporter activity" ; gene "SPAC823.10c" ; product "mitochondrial carrier with solute carrier repeats (predicted)" ;
chromosome1 GeneDB mRNA 1054735 1055845 . + . mRNA SPAC23C4.15 ; systematic_id "SPAC23C4.15" ; colour "2" ; gene "rpb5 ||| SPAC23C4.15" ; Alias "rpb5" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:12/12E06" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
; DNA-directed RNA polymerase III complex
GO:0003899
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006360; transcription from RNA polymerase I promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0006383; transcription from RNA polymerase III promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YBR154C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpb5" ; product "DNA-directed RNA polymerase I, II and III subunit Rpb5" ;
chromosome1 GeneDB mRNA 592250 593792 . + . mRNA SPAC3H8.04 ; db_xref "SPD:15/15B02" ; systematic_id "SPAC3H8.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human KAII539 ortholog; date=20100806" ; colour "7" ; GO "GO:0045132; meiotic chromosome segregation" ; gene "SPAC3H8.04" ; product "chromosome segregation protein (predicted)" ;
chromosome1 GeneDB mRNA 1809732 1811326 . - . mRNA SPAC1002.08c ; systematic_id "SPAC1002.08c" ; colour "2" ; gene "SPAC1002.08c ||| mtf1" ; Alias "mtf1" ; db_xref "SPD:17/17C03" ; GO "GO:0005759; mitochondrial matrix
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0000980; RNA polymerase II enhancer sequence specific DNA binding
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0010551; regulation of gene-specific transcription from RNA polymerase II promoter
GO:0006390; transcription from mitochondrial promoter
GO: SF 3156141; mitochondrial promoter binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:21138961; date=20110112 ||| term=orthologous to S. cerevisiae YMR228W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=species distribution, conserved in Vertebrates; date=20110112 ||| term=human TFB1M and TFB2M ortholog; date=20110112 ||| term=gene expression, transcriptionally regulates srk1; db_xref=PMID:21138961; date=20110112 ||| term=target is srkl; qualifier=transcriptionally_regulates; db_xref=PMID:21138961; date=20110112 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:21138961; date=20110112" ; primary_name "mtf1" ; product "mitochondrial RNA polymerase specificity factor Mtf1" ;
chromosome1 GeneDB mRNA 1866933 1868140 . + . mRNA SPAPB1A10.05 ; systematic_id "SPAPB1A10.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAPB1A10.05" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 5497041 5497391 . - . mRNA SPAC869.09 ; db_xref "SPD:02/02C03" ; systematic_id "SPAC869.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa conidiation-specific protein 6; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC22G7.11C and SPAC11D3.01C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC869.09" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 317030 318955 . - . mRNA SPAC12G12.15 ; systematic_id "SPAC12G12.15" ; colour "7" ; gene "sif3 ||| SPAC12G12.15" ; db_xref "SPD:45/45E01" ; Alias "sif3" ; GO "GO:0031965; nuclear membrane
GO:0005515; protein binding
; spindle pole body
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YFR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sif3" ; product "Sad1 interacting factor 3 (predicted)" ; reserved_name "sif3" ;
chromosome1 GeneDB mRNA 2860952 2861740 . - . mRNA SPAC8F11.05c ; systematic_id "SPAC8F11.05c" ; colour "8" ; gene "SPAC8F11.05c ||| mug130" ; db_xref "SPD:09/09H05" ; Alias "mug130" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug130" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2167170 2168987 . + . mRNA SPAC23C11.17 ; systematic_id "SPAC23C11.17" ; colour "7" ; gene "SPAC23C11.17 ||| mdm28" ; Alias "mdm28" ; db_xref "SPD:24/24E06" ; GO "GO:0007005; mitochondrion organization and biogenesis
GO:0005743; mitochondrial inner membrane
GO:0030007; potassium ion homeostasis
GO:0071805; potassium ion transmembrane transport
GO:0051204; protein insertion into mitochondrial membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPR125W and YOL027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human LETMa ortholog; date=20100614 ||| term=disease associated, Wolf- Hirschhorn syndrome; date=20100614" ; primary_name "mdm28" ; product "mitochondrial inner membrane protein involved in potassium ion transport Mdm28 (predicted)" ;
chromosome1 GeneDB mRNA 781397 782331 . + . mRNA SPAC4G8.10 ; systematic_id "SPAC4G8.10" ; colour "7" ; gene "gos1 ||| SPAC4G8.10" ; Alias "gos1" ; db_xref "SPD:05/05F02" ; GO "GO:0016192; vesicle-mediated transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005484; SNAP receptor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gos1" ; product "SNARE Gos1 (predicted)" ;
chromosome1 GeneDB mRNA 1800107 1803077 . - . mRNA SPAC1002.03c ; systematic_id "SPAC1002.03c" ; colour "2" ; gene "gls2 ||| SPAC1002.03c" ; db_xref "SPD:39/39B04" ; Alias "gls2" ; GO "GO:0005783; endoplasmic reticulum
GO:0004558; alpha-glucosidase activity
GO:0051691; cellular oligosaccharide biosynthesis
GO:0009272; fungal-type cell wall biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR229C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=name description, GLucoSidase; cv=name_description; date=20100126" ; primary_name "gls2" ; product "glucosidase II Gls2" ; EC_number "3.2.1.-" ;
chromosome1 GeneDB mRNA 880727 884190 . - . mRNA SPAC23G3.08c ; systematic_id "SPAC23G3.08c" ; colour "2" ; gene "SPAC23G3.08c ||| ubp7" ; db_xref "SPD:33/33H05" ; Alias "ubp7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL156W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human USP45 ortholog; db_xref=PMID:20838651; date=20101001" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0005737; cytoplasm
GO:0016579; protein deubiquitination" ; primary_name "ubp7" ; product "ubiquitin C-terminal hydrolase Ubp7" ;
chromosome1 GeneDB mRNA 4192110 4195193 . - . mRNA SPAC25B8.19c ; systematic_id "SPAC25B8.19c" ; colour "7" ; gene "SPAC25B8.19c ||| SPAC683.01c" ; db_xref "SPD:33/33B12" ; synonym "SPAC683.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent" ; product "transcription factor zf-C2H2 type (predicted)" ;
chromosome1 GeneDB mRNA 2276900 2278002 . + . mRNA SPAC4G9.12 ; db_xref "SPD:06/06C09" ; systematic_id "SPAC4G9.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=subunit composition, monomeric; cv=subunit_composition; db_xref=PMID:7840612; date=20061122 ||| term=orthologous to S. cerevisiae YDR248C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "2" ; GO "GO:0019521; D-gluconate metabolism
GO:0046316; gluconokinase activity
GO:0005524; ATP binding" ; gene "SPAC4G9.12" ; product "gluconokinase" ;
chromosome1 GeneDB mRNA 4580800 4582176 . + . mRNA SPAC12B10.04 ; db_xref "SPD:23/23A05" ; systematic_id "SPAC12B10.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR094W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0004835; tubulin-tyrosine ligase activity
GO:0018166; C-terminal protein-tyrosinylation
GO:0000226; microtubule cytoskeleton organization" ; gene "SPAC12B10.04" ; product "tubulin-tyrosine ligase (predicted)" ;
chromosome1 GeneDB mRNA 2625042 2625332 . - . mRNA SPAC7D4.08 ; db_xref "SPD:01/01D04" ; systematic_id "SPAC7D4.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC7D4.08" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3957103 3959297 . + . mRNA SPAC2F3.16 ; db_xref "SPD:44/44G06" ; systematic_id "SPAC2F3.16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=zf-C2H2 type; date=20060726 ||| term=zf-CHY; date=20060726 ||| term=LIM domain; date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAC2F3.16" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB mRNA 4088773 4089700 . + . mRNA SPAC23A1.05 ; db_xref "SPD:01/01E09" ; systematic_id "SPAC23A1.05" ; GO "GO:0005783; endoplasmic reticulum
GO:0017059; serine C-palmitoyl transferase complex
GO:0030148; sphingolipid biosynthetic process
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090303 ||| term=species distribution, conserved in Fungi; date=20091002 ||| term=species distribution, conserved in Metazoa; date=20091002 ||| term=species distribution, conserved in Eukaryotes; date=20091002 ||| term=species distribution, conserved in Vertebrates; date=20091002 ||| term=human SSSPTA ortholog; date=20091002 ||| term=species distribution, conserved in Eukaryotes only; date=20091216 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100127" ; colour "7" ; gene "SPAC23A1.05" ; product "serine palmitoyl transferase A subunit (predicted)" ;
chromosome1 GeneDB mRNA 3811066 3811895 . - . mRNA SPAC1F12.04c ; db_xref "SPD:06/06B08" ; systematic_id "SPAC1F12.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC1F12.04c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 721617 723645 . - . mRNA SPAPJ696.01c ; Alias "vps17" ; systematic_id "SPAPJ696.01c" ; colour "2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR132W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0031965; nuclear membrane
GO:0005628; prospore membrane
GO:0030904; retromer complex
GO:0030904; retromer complex
GO:0035091; phosphoinositide binding
GO:0006886; intracellular protein transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0042147; retrograde transport, endosome to Golgi
GO:0030437; sporulation (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)" ; gene "vps17 ||| SPAPJ696.01c" ; primary_name "vps17" ; product "retromer complex subunit Vps17" ;
chromosome1 GeneDB mRNA 1097758 1099364 . - . mRNA SPAC30D11.11 ; db_xref "SPD:20/20E09" ; systematic_id "SPAC30D11.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR023C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005783; endoplasmic reticulum
GO:0016020; membrane
GO:0046872; metal ion binding
GO:0006882; zinc ion homeostasis" ; gene "SPAC30D11.11" ; product "Haemolysin-III family protein (predicted)" ;
chromosome1 GeneDB mRNA 2923322 2924525 . + . mRNA SPAC2E1P3.01 ; db_xref "SPD:15/15H09" ; systematic_id "SPAC2E1P3.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR102C and YLR460C and YNL134C; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; GO "GO:0008106; alcohol dehydrogenase (NADP+) activity
GO:0008270; zinc ion binding
GO:0033554; cellular response to stress" ; gene "SPAC2E1P3.01" ; product "dehydrogenase (predicted)" ;
chromosome1 GeneDB mRNA 507550 509861 . - . mRNA SPAC227.07c ; systematic_id "SPAC227.07c" ; colour "2" ; gene "pab1 ||| SPAC227.07c" ; Alias "pab1" ; db_xref "SPD:25/25B10" ; GO "GO:0008360; regulation of cell shape
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0071775; regulation of cell cycle cytokinesis
GO:0006417; regulation of translation
GO:0008601; protein phosphatase type 2A regulator activity
GO:0000159; protein phosphatase type 2A complex
GO:0034047; regulation of protein phophatase type 2A activity
GO: SF also remove parent; db_xref=regulation of establishment of cell polarity involved in cell shape" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL190C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pab1" ; product "protein phosphatase regulatory subunit Pab1" ;
chromosome1 GeneDB mRNA 4911584 4913877 . + . mRNA SPAPB8E5.03 ; Alias "mae1" ; systematic_id "SPAPB8E5.03" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0071423; malate transmembrane transport
GO:0071422; succinate transmembrane transport
GO:0015140; malate transmembrane transporter activity
GO:0015141; succinate transmembrane transporter activity" ; gene "mae1 ||| SPAPB8E5.03" ; primary_name "mae1" ; product "malic acid transport protein Mae1" ;
chromosome1 GeneDB mRNA 4470681 4471348 . + . mRNA SPAC9E9.15 ; db_xref "SPD:42/42G07" ; systematic_id "SPAC9E9.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC9E9.15" ; product "CIA30 protein (predicted)" ;
chromosome1 GeneDB mRNA 1841908 1843995 . - . mRNA SPAC1399.03 ; systematic_id "SPAC1399.03" ; colour "2" ; gene "fur4 ||| SPAC1399.03" ; Alias "fur4" ; db_xref "SPD:49/49B11" ; GO "GO:0045121; lipid raft
GO:0005886; plasma membrane
GO:0015505; uracil:cation symporter activity
GO:0015857; uracil transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR021W and YIR028W and YBL042C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "fur4" ; product "uracil permease" ;
chromosome1 GeneDB mRNA 3557029 3558183 . - . mRNA SPAC17A2.04c ; systematic_id "SPAC17A2.04c" ; colour "7" ; gene "SPAC17A2.04c ||| cns1" ; Alias "cns1" ; db_xref "SPD:16/16F06" ; GO "GO:0031072; heat shock protein binding
GO:0006457; protein folding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR155W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cns1" ; product "HSP chaperone complex subunit Cns1 (predicted)" ;
chromosome1 GeneDB mRNA 3646235 3648883 . + . mRNA SPAC8C9.04 ; db_xref "SPD:26/26H07" ; systematic_id "SPAC8C9.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; gene "SPAC8C9.04" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 796993 798778 . - . mRNA SPAC16C9.04c ; systematic_id "SPAC16C9.04c" ; colour "7" ; gene "mot2 ||| SPAC16C9.04c" ; Alias "mot2" ; db_xref "SPD:25/25G07" ; GO "GO:0030014; CCR4-NOT complex
GO:0003723; RNA binding
GO:0016564; transcriptional repressor activity
GO:0004842; ubiquitin-protein ligase activity
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006402; mRNA catabolism
GO:0000289; poly(A) tail shortening
GO:0016567; protein ubiquitination
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-CCCH type; cv=protein_family; date=20070102 ||| term=zinc finger protein; date=20070102 ||| term=zf-C3HC4 type (RING finger); cv=protein_family; date=20070102 ||| term=rrm RNA recognition motif; cv=protein_family; date=20070102 ||| term=orthologous to S. cerevisiae YER068W; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=20080528 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mot2" ; product "CCR4-Not complex subunit Mot2 (predicted)" ;
chromosome1 GeneDB mRNA 294755 299101 . - . mRNA SPAC18B11.11 ; systematic_id "SPAC18B11.11" ; colour "7" ; gene "SPAC1F5.01 ||| SPAC18B11.11" ; Alias "SPAC1F5.01" ; db_xref "SPD:39/39D04" ; synonym "SPAC1F5.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, tumor suppressor syndrome, tuberous sclereosis; date=19700101 ||| term=similar to S. pombe SPAC630.13c; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005096; GTPase activator activity
GO:0007264; small GTPase mediated signal transduction" ; primary_name "SPAC1F5.01" ; product "GTPase activating protein (predicted)" ;
chromosome1 GeneDB mRNA 4878241 4878453 . + . mRNA SPAC4F10.22 ; Alias "cmc4" ; systematic_id "SPAC4F10.22" ; synonym "tam2" ; colour "10" ; GO "GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=conserved in Eukaryotes; date=20090720 ||| term=conserved in Eukaryotes only; date=20090720 ||| term=conserved in Vertebrates; date=20090720 ||| term=conserved in Metazoa; date=20090720 ||| term=conserved in Fungi; date=20090720 ||| term=similar to S. cerevisiae YMR194C-B; date=20090720 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; gene "SPAC4F10.22" ; primary_name "cmc4" ; product "mitochondrial intermembrane space protein involved in respiratory growth" ;
chromosome1 GeneDB mRNA 2588696 2590072 . - . mRNA SPAC823.05c ; systematic_id "SPAC823.05c" ; colour "7" ; gene "tlg2 ||| SPAC823.05c" ; Alias "tlg2" ; db_xref "SPD:13/13E10" ; GO "GO:0005484; SNAP receptor activity
GO:0016192; vesicle-mediated transport
GO:0010811; positive regulation of cell substrate adhesion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, adhesion defects, cell-substrate adhesion, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706 ||| term=SNARE; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOL018C and YAL014C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tlg2" ; product "SNARE Tlg2 (predicted)" ;
chromosome1 GeneDB mRNA 2152042 2154223 . + . mRNA SPAC23C11.11 ; systematic_id "SPAC23C11.11" ; colour "2" ; gene "cka1 ||| orb5 ||| SPAC23C11.11" ; Alias "cka1" ; db_xref "SPD:21/21B12" ; synonym "orb5" ; GO "GO:0031931; TORC 1 complex
GO:0031932; TORC 2 complex
GO:0005956; protein kinase CK2 complex
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0031929; TOR signaling pathway
GO:0007163; establishment and/or maintenance of cell polarity (sensu Fungi)
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:8187760; date=20100731 ||| term=CK2 subfamily; db_xref=PMID:8264625; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8187760; date=19700101 ||| term=orthologous to S. cerevisiae YIL035C and YOR061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cka1" ; product "serine/threonine protein kinase Cka1" ; EC_number "2.7.11.1" ;
chromosome1 GeneDB mRNA 728375 731731 . + . mRNA SPAC22G7.02 ; systematic_id "SPAC22G7.02" ; colour "2" ; gene "kap111 ||| SPAC22G7.02" ; Alias "kap111" ; db_xref "SPD:48/48B08" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0008565; protein transporter activity
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15195092; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YGL016W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "kap111" ; product "karyopherin Kap111 (predicted)" ;
chromosome1 GeneDB mRNA 4143658 4147120 . + . mRNA SPAC26H5.11 ; systematic_id "SPAC26H5.11" ; colour "7" ; gene "SPAC26H5.11 ||| mug56" ; Alias "mug56" ; db_xref "SPD:29/29G06" ; GO "GO:0005619; spore wall (sensu Fungi)
GO:0030476; spore wall assembly (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR104C; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mug56" ; product "spore wall assembly protein (predicted)" ;
chromosome1 GeneDB mRNA 2036330 2039520 . + . mRNA SPAC17H9.20 ; systematic_id "SPAC17H9.20" ; colour "2" ; gene "psc3 ||| SPAC17H9.20 ||| SPAC607.01" ; Alias "psc3" ; db_xref "SPD:47/47H04" ; synonym "SPAC607.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11069892; date=19700101 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YIL026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:16207082; date=20100425 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=phenotype, spindle elongation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721" ; GO "GO:0030892; mitotic cohesin complex
GO:0007064; mitotic sister chromatid cohesion
GO:0000794; condensed nuclear chromosome" ; primary_name "psc3" ; product "mitotic cohesin complex, non-SMC subunit Psc3" ;
chromosome1 GeneDB mRNA 5512757 5514742 . + . mRNA SPAC869.03c ; db_xref "SPD:46/46C05" ; systematic_id "SPAC869.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL016C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0015204; urea transporter activity
GO:0071918; urea transmembrane transport
GO:0005886; plasma membrane" ; gene "SPAC869.03c" ; product "urea transporter (predicted)" ;
chromosome1 GeneDB mRNA 4486362 4488122 . - . mRNA SPAC17C9.07 ; systematic_id "SPAC17C9.07" ; colour "7" ; gene "alg8 ||| SPAC17C9.07" ; Alias "alg8" ; db_xref "SPD:24/24D09" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006490; oligosaccharide-lipid intermediate assembly
GO:0042283; dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR067C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "alg8" ; product "glucosyltransferase Alg8 (predicted)" ;
chromosome1 GeneDB mRNA 3749695 3751621 . + . mRNA SPAP7G5.06 ; Alias "per1" ; systematic_id "SPAP7G5.06" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0035524; proline transmembrane transport
GO:0006808; regulation of nitrogen utilization
GO:0015193; L-proline transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=gene expression, alternative transcript, alternative start; db_xref=PMID:20404084; date=20100504 ||| term=gene expression, expression induced by proline; db_xref=PMID:20404084; date=20100504" ; colour "2" ; primary_name "per1" ; product "plasma membrane amino acid permease Per1" ;
chromosome1 GeneDB mRNA 1505088 1507562 . - . mRNA SPAC5D6.04 ; db_xref "SPD:45/45B12" ; systematic_id "SPAC5D6.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR287W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0055085; transmembrane transport
GO:0022857; transmembrane transporter activity
GO:0016021; integral to membrane" ; colour "7" ; gene "SPAC5D6.04" ; product "auxin family transmembrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 4846672 4849530 . - . mRNA SPAC4F10.09c ; db_xref "SPD:38/38E03" ; systematic_id "SPAC4F10.09c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0030690; Noc1p-Noc2p complex" ; gene "SPAC4F10.09c" ; product "ribosome biogenesis protein Noc1 (predicted)" ;
chromosome1 GeneDB mRNA 3943194 3946427 . + . mRNA SPAC2F3.10 ; systematic_id "SPAC2F3.10" ; colour "7" ; gene "vps54 ||| SPAC2F3.10" ; Alias "vps54" ; db_xref "SPD:47/47C10" ; GO "GO:0000938; GARP complex
GO:0016192; vesicle-mediated transport
GO:0006896; Golgi to vacuole transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "vps54" ; product "GARP complex subunit Vps54 (predicted)" ;
chromosome1 GeneDB mRNA 558909 560549 . - . mRNA SPAC2F7.13c ; systematic_id "SPAC2F7.13c" ; colour "7" ; gene "SPAC2F7.13c ||| wrs1" ; Alias "wrs1" ; db_xref "KEGG:MAP00380; ||| KEGG:MAP00970; ||| SPD:18/18H07" ; GO "GO:0005737; cytoplasm
GO:0004830; tryptophan-tRNA ligase activity
GO:0006436; tryptophanyl-tRNA aminoacylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "wrs1" ; product "tryptophan-tRNA ligase Wrs1 (predicted)" ; EC_number "6.1.1.2" ;
chromosome1 GeneDB mRNA 5146199 5148454 . + . mRNA SPAC26F1.14c ; systematic_id "SPAC26F1.14c" ; colour "7" ; gene "SPAC29A4.01c ||| SPAC26F1.14c ||| aif1" ; Alias "aif1" ; db_xref "SPD:35/35F12" ; synonym "SPAC29A4.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005634; nucleus
GO:0005739; mitochondrion
GO:0016668; oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor
GO:0071452; cellular response to singlet oxygen" ; primary_name "aif1" ; product "apoptosis-inducing factor homolog Aif1 (predicted)" ;
chromosome1 GeneDB mRNA 1087415 1089044 . - . mRNA SPAC1A6.09c ; systematic_id "SPAC1A6.09c" ; colour "2" ; gene "lag1 ||| SPAC1A6.09c" ; Alias "lag1" ; db_xref "SPD:40/40D03" ; GO "GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0050291; sphingosine N-acyltransferase activity
GO:0046513; ceramide biosynthesis
GO:0042493; response to drug
GO:0009636; response to toxin
GO:0007035; vacuolar acidification
GO:0042493; response to drug" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL003C and YKL008C; date=19700101 ||| term=phenotype, resistance to drugs; qualifier=overexpression; cv=phenotype; db_xref=PMID:18441123; date=20080731 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "lag1" ; product "sphingosine N-acyltransferase Lag1" ;
chromosome1 GeneDB mRNA 4320758 4321533 . - . mRNA SPAC27F1.03c ; systematic_id "SPAC27F1.03c" ; colour "2" ; gene "SPAC27F1.03c ||| uch1" ; db_xref "SPD:42/42H03" ; Alias "uch1" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004221; ubiquitin thiolesterase activity
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR099W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human UCHL3 ortholog; date=20101001" ; primary_name "uch1" ; product "ubiquitin C-terminal hydrolase Uch1" ;
chromosome1 GeneDB mRNA 4948616 4949022 . + . mRNA SPAC1B3.20 ; db_xref "SPD:01/01C08" ; systematic_id "SPAC1B3.20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1B3.20" ; product "sequence orphan" ; note "confirmed intron" ;
chromosome1 GeneDB mRNA 2583804 2584233 . + . mRNA SPAC823.02 ; systematic_id "SPAC823.02" ; colour "8" ; gene "SPAC823.02" ; note "confirmed intron" ; obsolete_name "SPAC1E11.02" ; db_xref "SPD:01/01A06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1338365 1339921 . - . mRNA SPAC6F12.13c ; systematic_id "SPAC6F12.13c" ; colour "2" ; gene "fps1 ||| SPAC6F12.13c" ; note "Fps1 appears to have YJL167W has retained the functions YPL069C, Spo9 (Fps1 paralog) appears to have farnesyltransferase like S. cerevisiae BTS1 YPL069C which does not have a direct ortholog in fission yeast" ; Alias "fps1" ; db_xref "SPD:44/44A12" ; GO "GO:0004161; dimethylallyltranstransferase activity
GO:0004337; geranyltranstransferase activity
GO:0005515; protein binding
GO:0004660; protein farnesyltransferase activity
GO:0006696; ergosterol biosynthetic process
GO:0045337; farnesyl diphosphate biosynthetic process
GO:0008299; isoprenoid biosynthetic process
GO:0018342; protein prenylation
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL167W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17596513; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=complementation, functionally complements S. cerevisiae ERG20; db_xref=PMID:17596513; date=20101012" ; primary_name "fps1" ; product "geranyltranstransferase Fps1" ; EC_number "2.5.1.10" ;
chromosome1 GeneDB mRNA 4706793 4709252 . + . mRNA SPAC1834.07 ; systematic_id "SPAC1834.07" ; colour "2" ; db_xref "SPD:46/46D06" ; Alias "klp3" ; synonym "krp1" ; GO "GO:0005875; microtubule associated complex
GO:0003777; microtubule motor activity
GO:0005515; protein binding
GO:0033205; cell cycle cytokinesis
GO:0007163; establishment or maintence of cell polarity
GO:0006886; intracellular protein transport
GO:0007018; microtubule-based movement
GO:0000301; retrograde transport, vesicle recycling within Golgi" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL079W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:12132578; date=20100705 ||| term=phenotype, cell morphology, branched; qualifier=overexpression; db_xref=PMID:12132578; date=20100705 ||| term=phenotype, septation defects; qualifier=overexpression; db_xref=PMID:12132578; date=20100705" ; primary_name "klp3" ; product "kinesin-like protein Klp3" ;
chromosome1 GeneDB mRNA 324126 325447 . - . mRNA SPAC12G12.12 ; db_xref "SPD:16/16H12" ; systematic_id "SPAC12G12.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0015165; pyrimidine nucleotide sugar transmembrane transporter activity
GO:0015785; UDP-galactose transport
GO:0000139; Golgi membrane" ; colour "7" ; gene "SPAC12G12.12" ; product "NST UDP-galactose transporter (predicted)" ;
chromosome1 GeneDB mRNA 1348780 1351142 . + . mRNA SPAC6F12.17 ; systematic_id "SPAC6F12.17" ; colour "7" ; gene "SPAC6F12.17 ||| rna14" ; Alias "rna14" ; db_xref "SPD:28/28A11" ; GO "GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation
GO:0005849; mRNA cleavage factor complex
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0005847; mRNA cleavage and polyadenylation specificity factor complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HAT repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rna14" ; product "mRNA cleavage and polyadenylation specificity factor complex subunit Rna14 (predicted)" ;
chromosome1 GeneDB mRNA 2795957 2797918 . + . mRNA SPAC1805.14 ; db_xref "SPD:21/21A11" ; systematic_id "SPAC1805.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC1805.14" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1759628 1760371 . - . mRNA SPAC17A5.05c ; db_xref "SPD:09/09A07" ; systematic_id "SPAC17A5.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to C. neoformans CNBH2410; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "10" ; gene "SPAC17A5.05c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 3907485 3908809 . - . mRNA SPAC323.01c ; systematic_id "SPAC323.01c" ; colour "7" ; gene "SPAC323.01c" ; db_xref "SPD:19/19C07" ; Alias "pos5" ; GO "GO:0005759; mitochondrial matrix
GO:0042736; NADH kinase activity
GO:0006741; NADP biosynthesis
GO:0016266; iron-sulfur cluster assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL188W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "pos5" ; product "mitochondrial NADH kinase Pos5 (predicted)" ; EC_number "2.7.1.86" ;
chromosome1 GeneDB mRNA 5246039 5247090 . - . mRNA SPAC14C4.10c ; db_xref "SPD:16/16A10" ; systematic_id "SPAC14C4.10c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0009134; nucleoside diphosphate catabolism
GO:0016787; hydrolase activity" ; gene "SPAC14C4.10c" ; product "Nudix family hydrolase" ; EC_number "3.-.-.-" ;
chromosome1 GeneDB mRNA 1714090 1715680 . - . mRNA SPAC664.07c ; systematic_id "SPAC664.07c" ; colour "2" ; gene "rad9 ||| SPAC664.07c" ; Alias "rad9" ; db_xref "SPD:23/23C09" ; GO "GO:0030896; checkpoint clamp complex
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0000077; DNA damage checkpoint
GO:0005515; protein binding
GO:0031573; intra-S DNA damage checkpoint" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=tudor domain; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=orthologous to S. cerevisiae YPL194W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rad9" ; product "checkpoint clamp complex protein Rad9" ;
chromosome1 GeneDB mRNA 153387 154535 . + . mRNA SPAC5H10.04 ; db_xref "SPD:18/18B05" ; systematic_id "SPAC5H10.04" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR179W and YPL171C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPAC5H10.04" ; product "NADPH dehydrogenase (predicted)" ; EC_number "1.6.99.1" ;
chromosome1 GeneDB mRNA 3429652 3430760 . - . mRNA SPAC3H5.07 ; systematic_id "SPAC3H5.07" ; colour "2" ; gene "rpl702 ||| rpl7-2 ||| rpl7 ||| rpl7b ||| SPAC3H5.07" ; Alias "rpl702" ; db_xref "SPD:49/49A02" ; synonym "rpl7-2 ||| rpl7 ||| rpl7b" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL076C and YPL198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl702" ; product "60S ribosomal protein L7" ;
chromosome1 GeneDB mRNA 2530138 2531204 . + . mRNA SPAC25H1.05 ; Alias "meu29" ; db_xref "SPD:42/42G02" ; systematic_id "SPAC25H1.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100103 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101" ; colour "8" ; primary_name "meu29" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4593781 4596086 . - . mRNA SPAC12B10.12c ; systematic_id "SPAC12B10.12c" ; colour "2" ; gene "rhp41 ||| rhp4a ||| SPAC12B10.12c" ; Alias "rhp41" ; db_xref "SPD:49/49C12" ; synonym "rhp4a" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=human XPC ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YER162C and YDR314C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006289; nucleotide-excision repair
GO:0006298; mismatch repair
GO:0000109; nucleotide-excision repair complex" ; primary_name "rhp41" ; product "DNA repair protein Rhp41" ;
chromosome1 GeneDB mRNA 1599331 1599624 . + . mRNA SPAC23H4.05c ; db_xref "SPD:01/01D06" ; systematic_id "SPAC23H4.05c" ; controlled_curation "term=species distribution, sequence orphan; date=20091213 ||| term=warning, below 100 amino acid size threshold; cv=warning; date=20091213 ||| term=species distribution, sequence orphan, uncharacterised; date=20091213 ||| term=species distribution, no apparent orthologs; date=20091213 ||| term=species distribution, identified in S. pombe only; date=20091213 ||| term=warning, previously annotated as dubious; cv=warning; date=20091213" ; colour "8" ; gene "SPAC23H4.05c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1211195 1213476 . - . mRNA SPAC10F6.03c ; systematic_id "SPAC10F6.03c" ; colour "7" ; gene "cts1 ||| SPAC10F6.03c" ; Alias "cts1" ; db_xref "SPD:37/37B11" ; GO "GO:0003883; CTP synthase activity
GO:0006241; CTP biosynthesis
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0005829; cytosol
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL039C and YJR103W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cts1" ; product "CTP synthase Cts1 (predicted)" ; EC_number "6.3.4.2" ;
chromosome1 GeneDB mRNA 231311 232992 . + . mRNA SPAC24B11.13 ; systematic_id "SPAC24B11.13" ; colour "7" ; gene "SPAC806.01 ||| SPAC24B11.13 ||| hem3" ; Alias "hem3" ; db_xref "SPD:15/15A02" ; synonym "SPAC806.01" ; GO "GO:0006783; heme biosynthesis
GO:0004418; hydroxymethylbilane synthase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060725 ||| term=orthologous to S. cerevisiae YDL205C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "hem3" ; product "hydroxymethylbilane synthase (predicted)" ; EC_number "2.5.1.61" ; reserved_name "hem3" ;
chromosome1 GeneDB mRNA 5538574 5539017 . - . mRNA SPAC186.04c ; db_xref "SPD:05/05C09" ; systematic_id "SPAC186.04c" ; pseudo "_no_value" ; colour "13" ; gene "SPAC186.04c" ; product "pseudogene, similar to N-terminal of transmembrane channel" ;
chromosome1 GeneDB mRNA 895026 896456 . + . mRNA SPAC22H12.02 ; systematic_id "SPAC22H12.02" ; colour "2" ; gene "tfg3 ||| taf14 ||| SPAC22H12.02" ; Alias "tfg3" ; db_xref "SPD:15/15F12" ; synonym "taf14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL129W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, sensitive to cold; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human YEATS4 and MLLT3 ortholog; date=20100203 ||| term=disease associated, cancer; date=20100218 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100218" ; GO "GO:0016514; SWI/SNF complex
GO:0000790; nuclear chromatin
GO:0005669; transcription factor TFIID complex
GO:0005674; transcription factor TFIIF complex
GO:0017025; TATA-binding protein binding
GO:0016251; general RNA polymerase II transcription factor activity
GO:0005515; protein binding
GO:0034605; cellular response to heat
GO:0006338; chromatin remodeling
GO:0006367; transcription initiation from RNA polymerase II promoter" ; primary_name "tfg3" ; product "transcription factor TFIIF complex subunit Tfg3" ;
chromosome1 GeneDB mRNA 4709779 4715113 . + . mRNA SPAC1834.08 ; systematic_id "SPAC1834.08" ; colour "2" ; gene "mak1 ||| phk3 ||| SPAC1834.08" ; Alias "mak1" ; db_xref "SPD:39/39E07" ; synonym "phk3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11758939; date=19700101 ||| term=target is Spy1; qualifier=indirect; db_xref=PMID:11758939; date=19700101 ||| term=PAC domain protein; date=19700101 ||| term=similar to S. pombe Mak2 and Mak3; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004673; protein histidine kinase activity
GO:0000155; two-component sensor activity
GO:0006468; protein amino acid phosphorylation
GO:0031137; regulation of conjugation with cellular fusion
GO:0007346; regulation of progression through mitotic cell cycle
GO:0031098; stress-activated protein kinase signaling pathway
GO:0000160; two-component signal transduction system (phosphorelay)" ; primary_name "mak1" ; product "histidine kinase Mak1" ;
chromosome1 GeneDB mRNA 4844855 4846129 . + . mRNA SPAC4F10.08 ; systematic_id "SPAC4F10.08" ; colour "8" ; gene "SPAC4F10.08 ||| mug126" ; db_xref "SPD:20/20H03" ; Alias "mug126" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug126" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 3487232 3490977 . + . mRNA SPAC328.06 ; systematic_id "SPAC328.06" ; colour "2" ; gene "SPAC328.06 ||| ubp2" ; db_xref "SPD:30/30E06" ; Alias "ubp2" ; GO "GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0043162; ubiquitin-dependent catabolic process via the multivesicular body sorting pathway" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110" ; primary_name "ubp2" ; product "ubiquitin C-terminal hydrolase Ubp2" ;
chromosome1 GeneDB mRNA 230545 231136 . + . mRNA SPAC24B11.14 ; db_xref "SPD:06/06E02" ; systematic_id "SPAC24B11.14" ; synonym "SPAC806.10" ; colour "6" ; gene "SPAC24B11.14 ||| SPAC806.10" ; product "dubious" ; note "neither intron was detected in transcriptome data, unlikely to be coding" ;
chromosome1 GeneDB mRNA 1280537 1281358 . + . mRNA SPAPB17E12.09 ; systematic_id "SPAPB17E12.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060106 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis
GO:0005737; cytoplasm" ; gene "SPAPB17E12.09" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4068636 4069847 . + . mRNA SPAC19G12.12 ; systematic_id "SPAC19G12.12" ; colour "2" ; gene "dlp1 ||| SPAC19G12.12" ; Alias "dlp1" ; obsolete_name "coq1" ; db_xref "SPD:12/12A02" ; GO "GO:0032476; decaprenyl diphosphate synthase complex 1
GO:0005743; mitochondrial inner membrane
GO:0016209; antioxidant activity
GO:0008834; di-trans,poly-cis- decaprenylcistransferase activity
GO:0019646; aerobic electron transport chain
GO:0070219; cellular sulfide ion homeostasis
GO:0006119; oxidative phosphorylation
GO:0019418; sulphide oxidation
GO:0006744; ubiquinone biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR003W; date=19700101 ||| term=genome organization, faster- evolving copy; cv=genome_org; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20070319 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=phenotype, growth defect, requires antioxidant for growth; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to H202; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to copper ions; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222" ; primary_name "dlp1" ; product "decaprenyl diphosphate synthase subunit 2 Dlp1" ; EC_number "2.5.1.31" ;
chromosome1 GeneDB mRNA 893375 894476 . - . mRNA SPAC22H12.01c ; systematic_id "SPAC22H12.01c" ; colour "8" ; gene "SPAC23G3.13c ||| SPAC22H12.01c ||| mug35" ; Alias "mug35" ; db_xref "SPD:31/31H01" ; synonym "SPAC23G3.13c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug35" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2898018 2901865 . + . mRNA SPACUNK4.07c ; systematic_id "SPACUNK4.07c" ; colour "2" ; gene "cta4 ||| sev4 ||| SPACUNK4.07c ||| SPAPYUK71.01" ; Alias "cta4" ; db_xref "SPD:48/48E05" ; obsolete_name "SPAC2E11.07c" ; synonym "sev4 ||| SPAPYUK71.01" ; GO "GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0005388; calcium-transporting ATPase activity
GO:0006874; calcium ion homeostasis
GO:0070588; calcium ion transmembrane transport" ; controlled_curation "term=phenotype, microtubule cytoskeleton defects; db_xref=PMID:12058018; date=20101101 ||| term=phenotype, cell polarity defects; db_xref=PMID:12058018; date=20101101 ||| term=phenotype, cytokinesis defects; db_xref=PMID:12058018; date=20101101 ||| term=phenotype, sensitive to calcium; cv=phenotype; qualifier=deletion; db_xref=PMID:16394583; date=20090429 ||| term=phenotype, sporulation defects; cv=phenotype; allele=sev4-L5; db_xref=PMID:16394583; date=20090429 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YEL031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16394583; date=20090429 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cta4" ; product "P-type ATPase, calcium transporting Cta4" ;
chromosome1 GeneDB mRNA 114026 115842 . + . mRNA SPAC11D3.05 ; systematic_id "SPAC11D3.05" ; colour "7" ; gene "SPAC11D3.05 ||| mfs2" ; Alias "mfs2" ; db_xref "SPD:45/45E02" ; GO "GO:0005886; plasma membrane
GO:0022857; carrier activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC530.02 and SPCC794.04C; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "mfs2" ; product "MFS family membrane transporter (predicted)" ; reserved_name "mfs2" ;
chromosome1 GeneDB mRNA 2863705 2865826 . - . mRNA SPAC8F11.07c ; systematic_id "SPAC8F11.07c" ; colour "2" ; gene "cdc24 ||| SPAC8F11.07c" ; Alias "cdc24" ; db_xref "SPD:33/33E03" ; GO "GO:0043137; DNA replication, removal of RNA primer
GO:0005634; nucleus
GO:0005515; protein binding
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0007090; regulation of S-phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9649516; date=19700101 ||| term=misc, disruption of interaction between Cdc27 and Pcn1 makes Cdc24-Dna2 complex dispensible; db_xref=PMID:15576681; date=20070725 ||| term=species distribution, no apparent orthologs; date=20070725 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:6943408; qualifier=ts; date=20100705" ; primary_name "cdc24" ; product "DNA replication protein Cdc24" ;
chromosome1 GeneDB mRNA 1984873 1985643 . - . mRNA SPAC9G1.15c ; Alias "mzt1" ; synonym "tam4" ; systematic_id "SPAC9G1.15c" ; controlled_curation "term=name description, name derived form human ortholog MOZART; db_xref=PMID:20360068; cv=name_description; date=20100324 ||| term=species distribution, conserved in Fungi; date=20100805 ||| term=species distribution, conserved in Metazoa; date=20100805 ||| term=species distribution, conserved in Vertebrates; date=20100805 ||| term=species distribution, conserved in Eukaryotes; date=20100805 ||| term=species distribution, conserved in Eukaryotes only; date=20100805 ||| term=human MOZART1 ortholog; db_xref=PMID:20360068; date=20100324 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902 ||| term=warning, new gene; db_xref=PMID:20360068; date=20101207 ||| term=no apparent S. cerevisiae ortholog; date=20090716 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; GO "GO:0033566; gamma tubulin complex localization
GO:0000930; gamma-tubulin complex
GO:0090307; spindle assembly involved in mitosis
GO:0000070; mitotic sister chromatid segregation" ; colour "7" ; primary_name "mzt1" ; product "mitotic spindle organizing protein Mzt1 (predicted)" ;
chromosome1 GeneDB mRNA 2445257 2447585 . + . mRNA SPAC32A11.01 ; systematic_id "SPAC32A11.01" ; colour "10" ; gene "SPAC32A11.01 ||| mug8" ; note "possible alternative for first splice donor sequence at 418 (gtatgg); orthology prediction, reciprocal Blast and PSI Blast (pers. comm. Maria Novatchkova)" ; Alias "mug8" ; db_xref "SPD:38/38C02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR188W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mug8" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 3695132 3696399 . - . mRNA SPAC15A10.09c ; systematic_id "SPAC15A10.09c" ; colour "7" ; gene "SPAC15A10.09c" ; note "this is not in the current release of Pfam, but should be built into SUR7 family shortly" ; db_xref "SPD:11/11F08" ; GO "GO:0005887; integral to plasma membrane
GO:0031505; cell wall organization and biogenesis
GO:0006665; sphingolipid metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR414C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; product "SUR7 family protein (predicted)" ;
chromosome1 GeneDB mRNA 4125124 4128756 . + . mRNA SPAC26H5.05 ; db_xref "SPD:48/48D01" ; systematic_id "SPAC26H5.05" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL020C and YIR033W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=misc functional group, membrane tethered transctiption factor; date=20110117" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0045723; positive regulation of fatty acid biosynthesic process
GO:0071458; integral to cytosolic side of endoplasmic reticulum membrane
GO:0010552; positive regulation of gene specific transcription from RNA polymerase II promoter
GO:0016563; transcription activator activity
GO:0005634; nucleus" ; gene "SPAC26H5.05" ; product "IPT/TIG ankyrin repeat containing transcription regulator of fatty acid biosynthesis (predicted)" ;
chromosome1 GeneDB mRNA 33835 34272 . + . mRNA SPAC977.03 ; systematic_id "SPAC977.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC1348.04 and SPAC750.03C; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=warning, possible horizontal transfer; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100902" ; colour "10" ; gene "SPAC977.03" ; product "methyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 2490083 2494209 . + . mRNA SPAC19A8.01c ; systematic_id "SPAC19A8.01c" ; colour "7" ; gene "sec73 ||| sec7c ||| SPAC19A8.01c ||| SPAC23H3.01" ; Alias "sec73" ; db_xref "SPD:30/30C04" ; synonym "sec7c ||| SPAC23H3.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YPR095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006886; intracellular protein transport
GO:0006887; exocytosis
GO:0016192; vesicle-mediated transport" ; primary_name "sec73" ; product "guanyl-nucleotide exchange factor Sec73 (predicted)" ;
chromosome1 GeneDB mRNA 3065329 3066260 . - . mRNA SPAC24C9.10c ; systematic_id "SPAC24C9.10c" ; colour "7" ; gene "mrp4 ||| SPAC24C9.10c" ; Alias "mrp4" ; db_xref "SPD:10/10A05" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit
GO:0000049; tRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrp4" ; product "mitochondrial ribosomal protein subunit S2 (predicted)" ;
chromosome1 GeneDB mRNA 1824637 1826122 . + . mRNA SPAC1002.14 ; systematic_id "SPAC1002.14" ; colour "7" ; gene "itt1 ||| SPAC1002.14" ; Alias "itt1" ; db_xref "SPD:22/22G04" ; GO "GO:0006449; regulation of translational termination
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=RWD domain; date=20060726 ||| term=orthologous to S. cerevisiae YML068W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "itt1" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB mRNA 3378225 3380259 . + . mRNA SPAC8E11.05c ; db_xref "SPD:15/15B03" ; systematic_id "SPAC8E11.05c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to D. hansenii DEHA0B04004g; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC8E11.05c" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 4744528 4746206 . + . mRNA SPAC458.07 ; systematic_id "SPAC458.07" ; colour "2" ; gene "tfa1 ||| SPAC458.07 ||| SPAPYUG7.01" ; Alias "tfa1" ; db_xref "SPD:24/24F02" ; synonym "SPAPYUG7.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15743411; date=19700101 ||| term=orthologous to S. cerevisiae YKL028W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; GO "GO:0005673; transcription factor TFIIE complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0005515; protein binding
GO:0051290; protein heterotetramerization
GO:0006367; transcription initiation from RNA polymerase II promoter" ; primary_name "tfa1" ; product "transcription factor TFIIE alpha subunit, TFIIEA, Tfa1" ;
chromosome1 GeneDB mRNA 1370197 1371276 . + . mRNA SPAC57A10.04 ; systematic_id "SPAC57A10.04" ; colour "10" ; gene "SPAC57A10.04 ||| mug10" ; db_xref "SPD:16/16G02" ; Alias "mug10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103" ; primary_name "mug10" ; product "Rho guanine nucleotide exchange factor (predicted)" ;
chromosome1 GeneDB mRNA 778532 781230 . + . mRNA SPAC4G8.09 ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:38/38F10" ; systematic_id "SPAC4G8.09" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR382C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006429; leucyl-tRNA aminoacylation
GO:0004823; leucine-tRNA ligase activity
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0003729; mRNA binding
GO:0000372; Group I intron splicing" ; gene "SPAC4G8.09" ; product "mitochondrial leucine-tRNA ligase (predicted)" ; EC_number "6.1.1.4" ;
chromosome1 GeneDB mRNA 670242 675357 . + . mRNA SPAC1D4.14 ; systematic_id "SPAC1D4.14" ; colour "7" ; gene "SPAC22F3.14c ||| SPAC1D4.14 ||| tho2" ; Alias "tho2" ; db_xref "SPD:48/48G10" ; synonym "SPAC22F3.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000347; THO complex
GO:0003676; nucleic acid binding
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006406; mRNA export from nucleus" ; primary_name "tho2" ; product "THO complex subunit Tho2 (predicted)" ;
chromosome1 GeneDB mRNA 1589954 1591656 . + . mRNA SPAC23H4.10c ; systematic_id "SPAC23H4.10c" ; colour "2" ; gene "thi4 ||| SPAC23H4.10c" ; Alias "thi4" ; db_xref "SPD:45/45A09" ; GO "GO:0009228; thiamin biosynthesis
GO:0005737; cytoplasm
GO:0004417; hydroxyethylthiazole kinase activity
GO:0004789; thiamin-phosphate diphosphorylase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, bifunctional enzyme; cv=cat_act; date=20061113 ||| term=orthologous to S. cerevisiae YPL214C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "thi4" ; product "thiamine-phosphate dipyrophosphorylase/hydroxyethylthiazole kinase" ; EC_number "2.5.1.3 ||| 2.7.1.50" ;
chromosome1 GeneDB mRNA 4162743 4164171 . + . mRNA SPAC25B8.05 ; db_xref "SPD:20/20H12" ; systematic_id "SPAC25B8.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0009982; tRNA-pseudouridine synthase activity
GO:0031119; tRNA pseudouridine synthesis" ; gene "SPAC25B8.05" ; product "tRNA-pseudouridine synthase (predicted)" ;
chromosome1 GeneDB mRNA 876930 878856 . + . mRNA SPAC23G3.06 ; db_xref "SPD:33/33C07" ; systematic_id "SPAC23G3.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR310C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0006364; rRNA processing
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding" ; gene "SPAC23G3.06" ; product "U3 snoRNP protein Nop58 (predicted)" ;
chromosome1 GeneDB mRNA 2918202 2919743 . - . mRNA SPAC513.06c ; db_xref "SPD:17/17D07" ; systematic_id "SPAC513.06c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPAC513.06c" ; product "dihydrodiol dehydrogenase (predicted)" ; EC_number "1.3.1.20" ;
chromosome1 GeneDB mRNA 3371353 3372507 . - . mRNA SPAC26A3.17c ; systematic_id "SPAC26A3.17c" ; colour "7" ; gene "SPAC26A3.17c ||| SPAC8E11.11" ; db_xref "SPD:16/16E10" ; synonym "SPAC8E11.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR465C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016274; protein-arginine N-methyltransferase activity
GO:0018216; peptidyl-arginine methylation
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0042254; ribosome biogenesis and assembly" ; product "N-methyltransferase (predicted)" ; EC_number "2.1.-.-" ;
chromosome1 GeneDB mRNA 511678 513325 . + . mRNA SPAC227.09 ; db_xref "SPD:20/20A03" ; systematic_id "SPAC227.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR113W and YKL132C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0009396; folic acid and derivative biosynthesis
GO:0005737; cytoplasm
GO:0004326; tetrahydrofolylpolyglutamate synthase activity
GO:0005739; mitochondrion" ; gene "SPAC227.09" ; product "folylpolyglutamate synthase (predicted)" ;
chromosome1 GeneDB mRNA 2016368 2017466 . + . mRNA SPAC17H9.07 ; db_xref "SPD:05/05G08" ; systematic_id "SPAC17H9.07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL122C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006614; SRP-dependent cotranslational protein targeting to membrane
GO:0005786; signal recognition particle (sensu Eukaryota)" ; gene "SPAC17H9.07" ; product "signal recognition particle subunit Srp21 (predicted)" ;
chromosome1 GeneDB mRNA 4437311 4437862 . - . mRNA SPAC9E9.17c ; db_xref "SPD:02/02F07" ; systematic_id "SPAC9E9.17c" ; colour "6" ; gene "SPAC9E9.17c" ; product "dubious" ; note "has a good correlation score and good consensus intron; gene prediction extended 29-08-05" ;
chromosome1 GeneDB mRNA 5089826 5094829 . + . mRNA SPAC1006.09 ; systematic_id "SPAC1006.09" ; colour "2" ; gene "win1 ||| SPAC1006.09 ||| SPAC1250.06c ||| SPAPJ730.01" ; Alias "win1" ; db_xref "SPD:48/48G03" ; synonym "SPAC1250.06c ||| SPAPJ730.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:3442828; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=orthologous to S. cerevisiae YCR073C and YNR031C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Wis1; qualifier=phosphorylates|activates; db_xref=PMID:9693384; date=20100427" ; GO "GO:0007346; regulation of progression through mitotic cell cycle
GO:0031098; stress-activated protein kinase signaling pathway
GO:0004709; MAP kinase kinase kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005515; protein binding
GO:0000186; activation of MAPKK activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "win1" ; product "MAP kinase kinase kinase Win1" ;
chromosome1 GeneDB mRNA 2120604 2122406 . - . mRNA SPAC20H4.06c ; db_xref "SPD:49/49A06" ; systematic_id "SPAC20H4.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC20H4.06c" ; product "RNA-binding protein" ;
chromosome1 GeneDB mRNA 3935528 3935833 . - . mRNA SPAC2F3.07c ; db_xref "SPD:01/01E08" ; systematic_id "SPAC2F3.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC2F3.07c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4566386 4570291 . + . mRNA SPAC31F12.01 ; systematic_id "SPAC31F12.01" ; colour "2" ; gene "zds1 ||| SPAC637.14 ||| SPAC31F12.01 ||| mug88" ; Alias "zds1" ; db_xref "SPD:47/47C05" ; synonym "SPAC637.14 ||| mug88" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR273C and YML109W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0005938; cell cortex
GO:0030428; cell septum
GO:0005737; cytoplasm
GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0071277; cellular response to calcium ion
GO:0030437; sporulation (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)
GO:0008601; protein phosphatase type 2A regulator activity
GO:0032880; regulation of protein localization
GO:0007165; signal transduction" ; primary_name "zds1" ; product "zds family protein phosphatase type A regulator Zds1 (predicted)" ;
chromosome1 GeneDB mRNA 5223184 5224608 . + . mRNA SPAC19D5.07 ; systematic_id "SPAC19D5.07" ; colour "2" ; gene "SPAC19D5.07 ||| uga1" ; Alias "uga1" ; db_xref "SPD:21/21H08" ; GO "GO:0005739; mitochondrion
GO:0003867; 4-aminobutyrate transaminase activity
GO:0030170; pyridoxal phosphate binding
GO:0009450; gamma-aminobutyric acid catabolic process
GO:0006536; glutamate metabolic process
GO:0019740; nitrogen utilization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "uga1" ; product "4-aminobutyrate aminotransferase (GABA transaminase)" ; EC_number "2.6.1.19" ;
chromosome1 GeneDB mRNA 5096867 5097580 . + . mRNA SPAC1250.04c ; systematic_id "SPAC1250.04c" ; colour "2" ; gene "atl1 ||| SPAC1250.04c" ; note "ribonuclease domain present in other eukaryotic homologs is missing" ; Alias "atl1" ; db_xref "SPD:01/01G07" ; GO "GO:0005634; nucleus
GO:0032132; O6-alkylguanine-DNA binding
GO:0003684; damaged DNA binding
GO:0003908; methylated-DNA-[protein]-cysteine S- methyltransferase activity
GO:0006307; DNA dealkylation
GO:0006307; DNA dealkylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL200C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atl1" ; product "alkyltransferase-like protein Atl1" ;
chromosome1 GeneDB mRNA 4281433 4283363 . + . mRNA SPAC2C4.13 ; systematic_id "SPAC2C4.13" ; colour "7" ; gene "vma16 ||| SPAC2C4.13" ; Alias "vma16" ; db_xref "SPD:06/06F05" ; GO "GO:0000220; vacuolar proton-transporting V-type ATPase, V0 domain
GO:0005524; ATP binding
GO:0007035; vacuolar acidification
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vma16" ; product "V-type ATPase V0 subunit c'' (predicted)" ;
chromosome1 GeneDB mRNA 5466778 5468649 . + . mRNA SPAC1039.09 ; systematic_id "SPAC1039.09" ; colour "2" ; gene "isp5 ||| SPAC1039.09" ; Alias "isp5" ; db_xref "SPD:35/35H09" ; GO "GO:0000747; conjugation with cellular fusion
GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "isp5" ; product "amino acid permease Isp5" ;
chromosome1 GeneDB mRNA 601848 603968 . - . mRNA SPAC3H8.08c ; db_xref "SPD:35/35C07" ; systematic_id "SPAC3H8.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPBC16G5.17; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; gene "SPAC3H8.08c" ; product "transcription factor (predicted)" ;
chromosome1 GeneDB mRNA 5361908 5363710 . - . mRNA SPAC4D7.07c ; db_xref "SPD:45/45H08" ; systematic_id "SPAC4D7.07c" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC4D7.07c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 45875 48369 . - . mRNA SPAC977.09c ; db_xref "SPD:51/51E06" ; systematic_id "SPAC977.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004620; phospholipase activity
GO:0046475; glycerophospholipid catabolism
GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region" ; gene "SPAC977.09c" ; product "phospholipase (predicted)" ; EC_number "3.1.1.5" ;
chromosome1 GeneDB mRNA 2247229 2248535 . - . mRNA SPAC13D6.02c ; systematic_id "SPAC13D6.02c" ; colour "2" ; gene "byr3 ||| SPAC13D6.02c" ; Alias "byr3" ; db_xref "SPD:05/05E01" ; GO "GO:0000747; conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=orthologous to S. cerevisiae YNL255C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=human CNBP and ZCCHC13 ortholog; date=20100208 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20101011" ; primary_name "byr3" ; product "zinc finger protein Byr3" ;
chromosome1 GeneDB mRNA 1647259 1649410 . + . mRNA SPAC343.05 ; systematic_id "SPAC343.05" ; colour "2" ; gene "vma1 ||| SPAC343.05" ; Alias "vma1" ; db_xref "SPD:27/27A06" ; GO "GO:0000221; hydrogen-transporting ATPase V1 domain
GO:0005524; ATP binding
GO:0046961; hydrogen ion transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0006897; endocytosis
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL185W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "vma1" ; product "V-type ATPase V1 domain, subunit A" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB mRNA 2008116 2009105 . - . mRNA SPAC17H9.03c ; systematic_id "SPAC17H9.03c" ; colour "2" ; gene "rdl1 ||| SPAC17H9.03c" ; note "highly conserved region A L/F M M * L * R K/E C/L R/K IL* R D/K L/F * L/M/V A V **************KPAL with vertebrate Trad" ; Alias "rdl1" ; db_xref "SPD:08/08A08" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0000725; recombinational repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR376C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human TRAD ortholog; date=20091112" ; primary_name "rdl1" ; product "RAD51D-like protein 1" ;
chromosome1 GeneDB mRNA 2620295 2622302 . - . mRNA SPAC7D4.10 ; systematic_id "SPAC7D4.10" ; colour "7" ; gene "vma13 ||| SPAC7D4.10" ; db_xref "SPD:46/46B03" ; Alias "vma13" ; GO "GO:0000221; vacuolar proton-translocating V-type ATPase, V1 domain
GO:0005524; ATP binding
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vma13" ; product "V-type ATPase V1 subunit H (predicted)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB mRNA 1377265 1378420 . + . mRNA SPAC57A10.07 ; db_xref "SPD:13/13B02" ; systematic_id "SPAC57A10.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR238W; date=19700101 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; colour "10" ; gene "SPAC57A10.07" ; product "conserved protein (fungal and protazoan)" ;
chromosome1 GeneDB mRNA 1502909 1503713 . + . mRNA SPAC5D6.06c ; systematic_id "SPAC5D6.06c" ; colour "7" ; gene "SPAC5D6.06c" ; Alias "alg14" ; db_xref "SPD:07/07H02" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0004577; N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR070C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "alg14" ; product "UDP-GlcNAc transferase associated protein Alg14 (predicted)" ;
chromosome1 GeneDB mRNA 1684607 1688732 . + . mRNA SPAC824.02 ; db_xref "SPD:48/48C06" ; systematic_id "SPAC824.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL025C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0050185; phosphatidylinositol deacylase activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006505; GPI anchor metabolism
GO:0046488; phosphatidylinositol metabolic process
GO:0006621; protein retention in ER
GO:0016050; vesicle organization and biogenesis" ; gene "SPAC824.02" ; product "GPI inositol deacylase (predicted)" ; EC_number "3.1.1.-" ;
chromosome1 GeneDB mRNA 3334881 3337199 . + . mRNA SPAC26A3.02 ; systematic_id "SPAC26A3.02" ; colour "2" ; gene "myh1 ||| myh ||| SPAC26A3.02" ; Alias "myh1" ; db_xref "SPD:24/24G10" ; synonym "myh" ; GO "GO:0005634; nucleus
GO:0051539; 4 iron, 4 sulfur cluster binding
GO:0019104; DNA N-glycosylase activity
GO:0003677; DNA binding
GO:0000702; oxidized base lesion DNA N-glycosylase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000701; purine-specific mismatch base pair DNA N-glycosylase activity
GO:0000077; DNA damage checkpoint
GO:0006281; DNA repair
GO:0006284; base-excision repair
GO:0034644; cellular response to UV" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, mutator; qualifier=deletion; cv=phenotype; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20090108 ||| term=phenotype, sensitive to UV; cv=phenotype; date=20090108 ||| term=phenotype, chromosome segregation defects; qualifier=double_mutant; with=rad1; cv=phenotype; db_xref=PMID:18675827; date=20090108 ||| term=phenotype, DNA fragmentation; qualifier=double_mutant; with=rad1;cv=phenotype; db_xref=PMID:18675827; date=20090108 ||| term=human MUTYH ortholog; date=20100217" ; primary_name "myh1" ; product "adenine DNA glycosylase Myh1" ; EC_number "3.2.2.-" ;
chromosome1 GeneDB mRNA 3702508 3708996 . + . mRNA SPAC15A10.11 ; systematic_id "SPAC15A10.11" ; colour "7" ; gene "ubr11 ||| SPAC15A10.11" ; Alias "ubr11" ; db_xref "SPD:34/34C02" ; GO "GO:0005634; nucleus
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=zf-UBR1 type; date=20060726 ||| term=orthologous to S. cerevisiae YGR184C and YLR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ubr11" ; product "N-end-recognizing protein (predicted)" ;
chromosome1 GeneDB mRNA 3544762 3547290 . - . mRNA SPAC1B1.04c ; db_xref "SPD:26/26H02" ; systematic_id "SPAC1B1.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0031251; PAN complex
GO:0005737; cytoplasm
GO:0031124; mRNA 3'-end processing
GO:0006301; postreplication repair" ; gene "SPAC1B1.04c" ; product "poly(A)-specific ribonuclease complex subunit Pan3 (predicted)" ;
chromosome1 GeneDB mRNA 3830540 3836101 . - . mRNA SPAC4H3.04c ; systematic_id "SPAC4H3.04c" ; colour "10" ; gene "SPAC4H3.04c" ; note "in some organisms this domain is present with ammecr1 which interacts with mediator complex and is implicated in transcription" ; db_xref "SPD:16/16G07" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=human MEMO1 ortholog; date=20100718" ; product "UPF0103 family" ;
chromosome1 GeneDB mRNA 2808475 2809960 . - . mRNA SPAC1B2.02c ; systematic_id "SPAC1B2.02c" ; colour "7" ; gene "ugo1 ||| SPAC1B2.02c" ; Alias "ugo1" ; db_xref "SPD:20/20C05" ; GO "GO:0005741; mitochondrial outer membrane
GO:0008053; mitochondrial fusion
GO:0006839; mitochondrial transport
GO:0022857; transmembrane transporter activity
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR470C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=20091118" ; primary_name "ugo1" ; product "mitochondrial fusion and transport protein Ugo1 (predicted)" ;
chromosome1 GeneDB mRNA 1812048 1813720 . - . mRNA SPAC1002.09c ; systematic_id "SPAC1002.09c" ; colour "2" ; gene "dld1 ||| dldh ||| SPAC1002.09c" ; Alias "dld1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00020; ||| KEGG:MAP00260; ||| KEGG:MAP00620; ||| SPD:24/24H06" ; synonym "dldh" ; GO "GO:0005960; glycine cleavage complex
GO:0042645; mitochondrial nucleoid
GO:0009353; oxoglutarate dehydrogenase complex (sensu Eukaryota)
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)
GO:0004148; dihydrolipoyl dehydrogenase activity
GO:0015036; disulfide oxidoreductase activity
GO:0004375; glycine dehydrogenase (decarboxylating) activity
GO:0004591; oxoglutarate dehydrogenase (succinyl- transferring) activity
GO:0004739; pyruvate dehydrogenase (acetyl- transferring) activity
GO:0006103; 2-oxoglutarate metabolism
GO:0006564; L-serine biosynthesis
GO:0006086; acetyl-CoA biosynthesis from pyruvate
GO:0019464; glycine decarboxylation via glycine cleavage system
GO:0006550; isoleucine catabolism
GO:0006552; leucine catabolism
GO:0006574; valine catabolism
GO:0000082; G1/S transition of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9366254; qualifier=ts; allele=cyj150; date=20100705 ||| term=disease associated, lactic acidosis; date=20060725 ||| term=orthologous to S. cerevisiae YFL018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:9366254; date=20100917" ; primary_name "dld1" ; product "dihydrolipoamide dehydrogenase Dld1" ; EC_number "1.8.1.4" ;
chromosome1 GeneDB mRNA 4668874 4669551 . + . mRNA SPAC144.08 ; db_xref "SPD:07/07G12" ; systematic_id "SPAC144.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0030544; Hsp70 protein binding
GO:0016226; iron-sulfur cluster assembly" ; gene "SPAC144.08" ; product "mitochondrial DNAJ domain protein Jac1 (predicted)" ;
chromosome1 GeneDB mRNA 646481 648075 . - . mRNA SPAC1D4.05c ; db_xref "SPD:19/19C12" ; systematic_id "SPAC1D4.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EXS family protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR414C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal anchor; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006621; protein retention in ER
GO:0016020; membrane
GO:0006486; protein amino acid glycosylation" ; gene "SPAC1D4.05c" ; product "Erd1 homolog (predicted)" ;
chromosome1 GeneDB mRNA 919940 922032 . + . mRNA SPAC1687.10 ; systematic_id "SPAC1687.10" ; colour "8" ; gene "mcp1 ||| SPAC1687.10" ; db_xref "SPD:46/46D03" ; Alias "mcp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "mcp1" ; product "sequence orphan" ; reserved_name "mcp1" ;
chromosome1 GeneDB mRNA 281832 282745 . + . mRNA SPAC1F5.05c ; db_xref "SPD:04/04A09" ; systematic_id "SPAC1F5.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan, uncharacterised; date=20100126 ||| term=species distribution, no apparent orthologs; date=20100126" ; colour "8" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2500585 2502072 . - . mRNA SPAC23H3.05c ; systematic_id "SPAC23H3.05c" ; colour "2" ; gene "swd1 ||| SPAC23H3.05c" ; Alias "swd1" ; db_xref "SPD:19/19B03" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0016571; histone methylation
GO:0051568; histone H3-K4 methylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=orthologous to S. cerevisiae YAR003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "swd1" ; product "Set1C complex subunit Swd1" ;
chromosome1 GeneDB mRNA 2591413 2592545 . + . mRNA SPAC823.07 ; db_xref "SPD:14/14E06" ; systematic_id "SPAC823.07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030026; manganese ion homeostasis
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0006506; GPI anchor biosynthesis
GO:0005789; endoplasmic reticulum membrane" ; gene "SPAC823.07" ; product "GPI-phospholipase A2 activity regulator (predicted)" ;
chromosome1 GeneDB mRNA 3538828 3540919 . - . mRNA SPAC1B1.02c ; db_xref "SPD:45/45D04" ; systematic_id "SPAC1B1.02c" ; colour "7" ; GO "GO:0003951; NAD+ kinase activity
GO:0019674; NAD metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL041W and YJR049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPAC1B1.02c" ; product "NAD/NADH kinase (predicted)" ; EC_number "2.7.1.23" ;
chromosome1 GeneDB mRNA 582295 584276 . + . mRNA SPAC13A11.05 ; db_xref "SPD:25/25A01" ; systematic_id "SPAC13A11.05" ; controlled_curation "term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0008233; peptidase activity" ; colour "10" ; gene "SPAC13A11.05" ; product "peptidase family M17" ;
chromosome1 GeneDB mRNA 1225522 1227279 . + . mRNA SPAC10F6.10 ; db_xref "SPD:35/35B09" ; systematic_id "SPAC10F6.10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to A. nidulans SUDD suppressor of bimD6 chromosome-spindle attachment defect; date=19700101 ||| term=orthologous to S. cerevisiae YOR119C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0007346; regulation of mitotic cell cycle
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000070; mitotic sister chromatid segregation" ; gene "SPAC10F6.10" ; product "protein kinase, RIO family (predicted)" ;
chromosome1 GeneDB mRNA 1393601 1395820 . + . mRNA SPAC20G8.03 ; systematic_id "SPAC20G8.03" ; colour "2" ; gene "itr2 ||| SPAC20G8.03" ; Alias "itr2" ; db_xref "SPD:35/35A05" ; GO "GO:0005365; myo-inositol transmembrane transporter activity
GO:0005365; myo-inositol transmembrane transporter activity
GO:0015798; myo-inositol transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR497C and YOL103W and YDR387C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9560432; date=20080328 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "itr2" ; product "MFS myo-inositol transporter" ;
chromosome1 GeneDB mRNA 3522650 3522973 . - . mRNA SPAC16E8.18 ; db_xref "SPD:51/51G06" ; systematic_id "SPAC16E8.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPAC16E8.18" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4252142 4253603 . - . mRNA SPAC21E11.03c ; systematic_id "SPAC21E11.03c" ; colour "2" ; gene "pcr1 ||| mts2 ||| SPAC21E11.03c" ; Alias "pcr1" ; db_xref "SPD:05/05A11" ; synonym "mts2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=bZIP (basic leucine zipper) transcription factor family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=Atf-CREB subfamily; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=pathway, links stress-activated MAPK (Sty1) pathway to cAMP-dependent protein kinase (Pka1) pathway; db_xref=PMID:15448137; date=20090104 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:7958849; date=20090104 ||| term=subunit composition, heterodimer; cv=subunit_composition; db_xref=PMID:7958849; date=20090104 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18252721; date=20090110" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0007131; meiotic recombination
GO:0051039; positive regulation of transcription, meiotic
GO:0046982; protein heterodimerization activity
GO:0033554; cellular response to stress
GO:0003677; DNA binding
GO:0000790; nuclear chromatin
GO:0033554; cellular response to stress
GO:0006995; cellular response to nitrogen starvation
GO:0043949; regulation of cAMP-mediated signaling
GO:0035065; regulation of histone acetylation
GO:0031060; regulation of histone methylation
GO:0043565; sequence-specific DNA binding
GO:0003723; RNA binding
GO:0010843; promoter binding
GO:0010844; recombination hotspot binding
GO:0010847; regulation of chromatin assembly
GO:0010848; regulation of chromatin disassembly" ; primary_name "pcr1" ; product "transcription factor Pcr1" ;
chromosome1 GeneDB mRNA 4276024 4276923 . + . mRNA SPAC2C4.09 ; db_xref "SPD:09/09D07" ; systematic_id "SPAC2C4.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe SPAC3H1.08c; date=19700101 ||| term=orthologous to S. cerevisiae YFL046W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC2C4.09" ; product "DUF1640 family protein" ;
chromosome1 GeneDB mRNA 2993441 2994763 . + . mRNA SPAC31G5.04 ; db_xref "SPD:17/17A03" ; systematic_id "SPAC31G5.04" ; colour "2" ; GO "GO:0047046; homoisocitrate dehydrogenase activity
GO:0009085; lysine biosynthetic process
GO:0005739; mitochondrion
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPAC31G5.04" ; product "homoisocitrate dehydrogenase" ; EC_number "1.1.1.87" ;
chromosome1 GeneDB mRNA 2395154 2396822 . - . mRNA SPAC22H10.12c ; systematic_id "SPAC22H10.12c" ; colour "7" ; gene "gdi1 ||| sec19 ||| SPAC22H10.12c" ; Alias "gdi1" ; db_xref "SPD:44/44E04" ; synonym "sec19" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, X-linked non-specific mental retardation; date=20060920 ||| term=orthologous to S. cerevisiae YER136W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005093; Rab GDP-dissociation inhibitor activity
GO:0007264; small GTPase mediated signal transduction
GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport" ; primary_name "gdi1" ; product "GDP dissociation inhibitor Gdi1 (predicted)" ;
chromosome1 GeneDB mRNA 2556632 2558336 . - . mRNA SPAC4A8.07c ; db_xref "SPD:24/24G05" ; systematic_id "SPAC4A8.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR171C and YLR260W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005794; Golgi apparatus
GO:0005783; endoplasmic reticulum
GO:0017050; D-erythro-sphingosine kinase activity
GO:0004143; diacylglycerol kinase activity
GO:0019722; calcium-mediated signaling
GO:0007205; protein kinase C activation
GO:0046520; sphingoid biosynthetic process" ; gene "SPAC4A8.07c" ; product "sphingoid long chain base kinase (predicted)" ; EC_number "2.7.1.107" ;
chromosome1 GeneDB mRNA 1301696 1305712 . - . mRNA SPAC1565.07c ; db_xref "SPD:48/48E07" ; systematic_id "SPAC1565.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CAND1 ortholog; date=20100919" ; GO "GO:0000151; ubiquitin ligase complex
GO:0017025; TATA-binding protein binding
GO:0051444; negative regulation of ubiquitin- protein ligase activity
GO:0016567; protein ubiquitination
GO:0006355; regulation of transcription, DNA- dependent
GO:0006352; transcription initiation" ; gene "SPAC1565.07c ||| knd1" ; product "TATA-binding protein (predicted)" ; reserved_name "knd1" ;
chromosome1 GeneDB mRNA 1897513 1899436 . + . mRNA SPAC140.02 ; systematic_id "SPAC140.02" ; colour "2" ; gene "gar2 ||| SPAC140.02" ; Alias "gar2" ; db_xref "SPD:24/24D02" ; GO "GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0003723; RNA binding
GO:0007000; nucleolus organization and biogenesis
GO:0006364; rRNA processing
GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YGR159C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; qualifier=during_mitosis; cv=pt_mod; db_xref=PMID:9211981; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "gar2" ; product "nucleolar protein required for rRNA processing" ;
chromosome1 GeneDB mRNA 1804650 1806797 . - . mRNA SPAC1002.05c ; systematic_id "SPAC1002.05c" ; colour "2" ; db_xref "SPD:37/37E11" ; Alias "jmj2" ; synonym "kdm5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C5HC2 type; date=19700101 ||| term=jmjC domain; date=19700101 ||| term=jmjN domain; date=19700101 ||| term=ARID domain; date=19700101 ||| term=orthologous to S. cerevisiae YJR119C and YMR176W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human KMD5A and KMD5B and KMD5C and KMD5D ortholog; date=20100217 ||| term=disease associated, cancer; qualifier=cancer_census; date=20100217" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0051864; histone demethylase activity (H3-K36 specific)
GO:0032452; histone demethylase activity (H3-K4 specific)
GO:0034647; histone demethylase activity (H3- trimethyl-K4 specific)
GO:0034647; histone demethylase activity (H3- trimethyl-K4 specific)
GO:0006338; chromatin remodeling
GO:0034648; histone demethylase activity (H3- dimethyl-K4 specific)
GO:0016577; histone demethylation
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010551; regulation of specific transcription from RNA polymerase II promoter
GO:0008270; zinc ion binding" ; primary_name "jmj2" ; product "histone demethylase Jmj2" ;
chromosome1 GeneDB mRNA 1109417 1111177 . - . mRNA SPAC30D11.05 ; systematic_id "SPAC30D11.05" ; colour "7" ; gene "aps3 ||| SPAC30D11.05" ; Alias "aps3" ; db_xref "SPD:14/14F10" ; GO "GO:0006896; Golgi to vacuole transport
GO:0016192; vesicle-mediated transport
GO:0030123; AP-3 adaptor complex
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "aps3" ; product "AP-3 adaptor complex subunit Aps3 (predicted)" ;
chromosome1 GeneDB mRNA 3186754 3188086 . - . mRNA SPAC1486.02c ; systematic_id "SPAC1486.02c" ; colour "10" ; gene "ucp14 ||| SPAC1486.02c" ; Alias "dsc2" ; db_xref "SPD:44/44C03" ; synonym "ucp14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOL073C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human UBAC2 ortholog; date=20100718" ; primary_name "dsc2" ; product "UBA domain protein Ucp14" ; reserved_name "dsc2" ;
chromosome1 GeneDB mRNA 4261582 4263890 . + . mRNA SPAC21E11.08 ; systematic_id "SPAC21E11.08" ; colour "7" ; gene "lcb2 ||| SPAC21E11.08 ||| SPAC2C4.02" ; Alias "lcb2" ; db_xref "SPD:33/33D10" ; synonym "SPAC2C4.02" ; GO "GO:0017059; serine C-palmitoyltransferase complex
GO:0004758; serine C-palmitoyltransferase activity
GO:0030148; sphingolipid biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR062W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "lcb2" ; product "serine palmitoyltransferase Lcb2 (predicted)" ; EC_number "2.3.1.50" ;
chromosome1 GeneDB mRNA 4639884 4640477 . + . mRNA SPAC30C2.05 ; systematic_id "SPAC30C2.05" ; colour "7" ; gene "erv14 ||| SPAC30C2.05" ; Alias "erv14" ; db_xref "SPD:05/05H05" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle
GO:0005789; endoplasmic reticulum membrane
GO:0016971; flavin-linked sulfhydryl oxidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR210W and YGL054C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "erv14" ; product "cornichon family protein Erv14 (predicted)" ;
chromosome1 GeneDB mRNA 5306855 5309051 . - . mRNA SPAC11E3.13c ; systematic_id "SPAC11E3.13c" ; colour "2" ; gene "SPAC11E3.13c ||| gas5" ; Alias "gas5" ; db_xref "SPD:52/52B02" ; GO "GO:0009277; fungal type cell wall
GO:0042124; 1,3-beta-glucanosyltransferase activity
GO:0031505; cell wall organization and biogenesis
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL030W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; primary_name "gas5" ; product "cell wall protein Gas5, 1,3-beta- glucanosyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 111005 111913 . - . mRNA SPAC11D3.03c ; db_xref "SPD:12/12E07" ; systematic_id "SPAC11D3.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; GO "GO:0045132; meiotic chromosome segregation" ; gene "SPAC11D3.03c" ; product "conserved protein" ; note "bacterial proteins are involved in urea metabolism" ;
chromosome1 GeneDB mRNA 5033448 5034661 . + . mRNA SPAC22E12.08 ; systematic_id "SPAC22E12.08" ; colour "2" ; gene "rrn10 ||| SPAC22E12.08" ; note "was originally annotated as dubious due to small size, no homology, only identified by splice site" ; Alias "rrn10" ; db_xref "SPD:02/02B04" ; GO "GO:0000500; RNA polymerase I upstream activating factor complex
GO:0005730; nucleolus
GO:0003701; RNA polymerase I transcription factor activity
GO:0000182; rDNA binding
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL025W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "rrn10" ; product "RNA polymerase I upstream activation factor complex subunit Rrn10" ;
chromosome1 GeneDB mRNA 3804582 3804954 . + . mRNA SPAC1556.06.2 ; Alias "meu2" ; systematic_id "SPAC1556.06.2" ; other_transcript "SPAC1556.06.1" ; synonym "SPAC1556.06b ||| SPAC1556.06" ; colour "8" ; controlled_curation "term=protein sequence feature, NLS; qualifier=predicted; db_xref=PMID:11376151; cv=sequence_feature; date=20060605 ||| term=gene expression, alternative transcripts; cv=gene_ex; db_xref=PMID:11376151; date=20060605 ||| term=species distribution, sequence orphan; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu2" ; product "sequence orphan" ; shared_id "SPAC1556.06" ;
chromosome1 GeneDB mRNA 1531211 1534148 . - . mRNA SPAC57A7.06 ; db_xref "SPD:47/47C08" ; systematic_id "SPAC57A7.06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex" ; gene "SPAC57A7.06" ; product "U3 snoRNP protein Utp14 (predicted)" ;
chromosome1 GeneDB mRNA 4818071 4820657 . - . mRNA SPAC20G4.03c ; systematic_id "SPAC20G4.03c" ; colour "2" ; gene "hri1 ||| SPAC20G4.03c" ; Alias "hri1" ; db_xref "SPD:28/28A04" ; GO "GO:0005524; ATP binding
GO:0004694; eukaryotic translation initiation factor 2alpha kinase activity
; protein binding
GO:0033554; cellular response to stress
GO:0032063; negative regulation of translational initiation in response to osmotic stress
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HRI subfamily; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12242291; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18502752; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Tif211; qualifier=phosphorylates; db_xref=PMID:12242291; date=20100820" ; primary_name "hri1" ; product "eIF2 alpha kinase Hri1" ;
chromosome1 GeneDB mRNA 3883507 3884346 . - . mRNA SPAC1071.12c ; systematic_id "SPAC1071.12c" ; colour "2" ; gene "stp1 ||| SPAC926.01c ||| SPAC1071.12c" ; Alias "stp1" ; db_xref "SPD:04/04C11" ; synonym "SPAC926.01c" ; GO "GO:0007346; regulation of mitotic cell cycle
GO:0004726; non-membrane spanning protein tyrosine phosphatatase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7961734; date=19700101 ||| term=phenotype, no obvious phenotype; qualifier=deletion; cv=phenotype; db_xref=PMID:7961734; date=19700101 ||| term=orthologous to S. cerevisiae YPR073C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "stp1" ; product "dual specificity phosphatase Stp1" ; EC_number "3.1.3.2" ;
chromosome1 GeneDB mRNA 2047550 2048130 . - . mRNA SPAC607.07c ; db_xref "SPD:03/03E09" ; systematic_id "SPAC607.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC607.07c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1170196 1172171 . - . mRNA SPAC22A12.08c ; db_xref "SPD:46/46B08" ; systematic_id "SPAC22A12.08c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, proteolytic cleavage; cv=pt_mod; date=20060825 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; date=20060825 ||| term=orthologous to S. cerevisiae YKR070W (N-term); date=19700101 ||| term=orthologous to S. cerevisiae YDL142C (C-term); date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005739; mitochondrion
GO:0005739; mitochondrion
GO:0016787; hydrolase activity
GO:0008808; cardiolipin synthase activity
GO:0008610; lipid biosynthesis
GO:0007006; mitochondrial membrane organization and biogenesis
GO:0032048; cardiolipin metabolic process" ; gene "SPAC22A12.08c" ; product "cardiolipin synthase/ hydrolase fusion protein (predicted)" ; EC_number "2.7.8.-" ;
chromosome1 GeneDB mRNA 3642498 3642845 . + . mRNA SPAC1142.09 ; db_xref "SPD:02/02B06" ; systematic_id "SPAC1142.09" ; synonym "SPAC8C9.02" ; controlled_curation "term=warning, appears to be part of transcript of adjacent gene; cv=warning; date=19700101" ; colour "6" ; gene "SPAC1142.09 ||| SPAC8C9.02" ; product "dubious" ;
chromosome1 GeneDB mRNA 2426191 2427467 . + . mRNA SPAC6B12.08 ; systematic_id "SPAC6B12.08" ; colour "7" ; gene "SPAC6B12.08 ||| mug185" ; Alias "mug185" ; db_xref "SPD:20/20D10" ; GO "GO:0030544; Hsp70 protein binding
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YNL227C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mug185" ; product "Co-chaperone for ATPase activity (predicted)" ;
chromosome1 GeneDB mRNA 3139724 3140954 . + . mRNA SPAC688.13 ; systematic_id "SPAC688.13" ; colour "2" ; gene "scn1 ||| SPAC688.13" ; Alias "scn1" ; db_xref "SPD:40/40C02" ; GO "GO:0030071; regulation of mitotic metaphase/anaphase transition" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR262W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "scn1" ; product "TatD DNase family Scn1" ;
chromosome1 GeneDB mRNA 1160219 1161390 . - . mRNA SPAC22A12.03c ; systematic_id "SPAC22A12.03c" ; colour "2" ; gene "csn4 ||| SPAC22A12.03c" ; Alias "csn4" ; db_xref "SPD:17/17G10" ; GO "GO:0010388; cullin deneddylation
GO:0008180; signalosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "csn4" ; product "COP9/signalosome complex subunit Csn4" ;
chromosome1 GeneDB mRNA 2613226 2614383 . + . mRNA SPAC7D4.13c ; db_xref "SPD:15/15A03" ; systematic_id "SPAC7D4.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC7D4.13c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 4645479 4647622 . + . mRNA SPAC30C2.08 ; db_xref "SPD:45/45D02" ; systematic_id "SPAC30C2.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPl260W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC30C2.08" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 3922354 3923496 . + . mRNA SPAC2F3.01 ; systematic_id "SPAC2F3.01" ; colour "2" ; gene "SPAC323.09 ||| SPAC2F3.01" ; Alias "imt1" ; db_xref "SPD:13/13F01" ; synonym "SPAC323.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; cv=phenotype; db_xref=PMID:20388730; date=20100622 ||| term=phenotype, cell morphology, pear shaped; db_xref=PMID:20388730; date=20100622 ||| term=orthologous to S. cerevisiae YBR161W and YPL057C; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=name description, Ipc Mannosyl- Transferase homologue; db_xref=PMID:20388730; date=20100622 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000030; mannosyltransferase activity
GO:0005537; mannose binding
GO:0051999; mannose inositol phosphoceramide biosynthetic process
GO:0033106; cis-Golgi network membrane
GO:0032588; trans-Golgi network membrane
GO:0006897; endocytosis
GO:0007038; endocytosed protein transport to vacuole" ; primary_name "imt1" ; product "mannosyltransferase Imt1" ;
chromosome1 GeneDB mRNA 2190880 2192063 . + . mRNA SPAC1783.03 ; systematic_id "SPAC1783.03" ; colour "2" ; gene "fta2 ||| SPAC1783.03 ||| sma2" ; Alias "fta2" ; db_xref "SPD:16/16B06" ; synonym "sma2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16855021; date=20070216 ||| term=species distribution, conserved in Fungi; date=20100919 ||| term=species distribution, conserved in Fungi only; date=20100919 ||| term=species distribution, conserved in Eukaryotes; date=20100919 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100919 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; kinetochore
; protein binding
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0034613; cellular protein localization
GO:0000819; sister chromatid segregation" ; primary_name "fta2" ; product "Sim4 and Mal2 associated (4 and 2 associated) protein 2" ;
chromosome1 GeneDB mRNA 640377 641641 . - . mRNA SPAC1D4.02c ; db_xref "SPD:19/19E09" ; systematic_id "SPAC1D4.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PDZ domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDR517W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human GORASP1 and GORASP2 ortholog; date=20100707" ; colour "7" ; GO "GO:0007030; Golgi organization
GO:0005794; Golgi apparatus
GO:0005737; cytoplasm
GO:0006888; ER to Golgi vesicle-mediated transport" ; gene "SPAC1D4.02c" ; product "human GRASP protein family Golgi protein (predicted)" ;
chromosome1 GeneDB mRNA 4828905 4832473 . + . mRNA SPAC20G4.08 ; db_xref "SPD:48/48B11" ; systematic_id "SPAC20G4.08" ; synonym "SPAC4F10.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090811 ||| term=species distribution, conserved in Fungi only; date=20090811 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090811" ; colour "10" ; gene "SPAC20G4.08 ||| SPAC4F10.01" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 896785 897767 . + . mRNA SPAC22H12.03 ; db_xref "SPD:12/12A12" ; systematic_id "SPAC22H12.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=abhydrolase family; date=19700101 ||| term=orthologous to S. cerevisiae YGR031W and YGR015C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0008474; palmitoyl-(protein) hydrolase activity
GO:0006631; fatty acid metabolic process" ; gene "SPAC22H12.03" ; product "mitochondrial hydrolase (predicted)" ;
chromosome1 GeneDB mRNA 5454643 5456619 . + . mRNA SPAC1039.04 ; db_xref "SPD:24/24G02" ; systematic_id "SPAC1039.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR260W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0015663; nicotinamide mononucleotide transmembrane transporter activity
GO:0035353; nicotinamide mononucleotide transmembrane transport" ; gene "SPAC1039.04" ; product "nicotinic acid plasma membrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 2042399 2043296 . + . mRNA SPAC607.04 ; db_xref "SPD:43/43C10" ; systematic_id "SPAC607.04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR173C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005634; nucleus
GO:0004428; inositol or phosphatidylinositol kinase activity
GO:0016310; phosphorylation
GO:0046488; phosphatidylinositol metabolic process" ; gene "SPAC607.04" ; product "inositol polyphosphate kinase (predicted)" ;
chromosome1 GeneDB mRNA 1177065 1178807 . + . mRNA SPAC22A12.11 ; systematic_id "SPAC22A12.11" ; colour "2" ; gene "dak1 ||| SPAC22A12.11" ; Alias "dak1" ; db_xref "SPD:45/45G01" ; GO "GO:0005737; cytoplasm
GO:0004371; glycerone kinase activity
GO:0006071; glycerol metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML070W and YFL053W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=gene expression, regulated by glucose; db_xref=PMID:20396879; date=20100622" ; primary_name "dak1" ; product "dihydroxyacetone kinase Dak1" ; EC_number "2.7.1.29" ;
chromosome1 GeneDB mRNA 5560189 5561646 . - . mRNA SPAC750.02c ; db_xref "SPD:51/51D10" ; systematic_id "SPAC750.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=similar to S. pombe SPBC1348.05 and SPAPB1A11.01 and SPBPB2B2.16c and SPCC1529.01; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; gene "SPAC750.02c" ; product "membrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 5153841 5155228 . + . mRNA SPAC26F1.12c ; db_xref "SPD:18/18D03" ; systematic_id "SPAC26F1.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR187C; date=19700101 ||| term=human BRP16 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human c8orf30A ortholog; date=20100718" ; colour "10" ; GO "GO:0005737; cytoplasm" ; gene "SPAC26F1.12c" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB mRNA 1129548 1132845 . + . mRNA SPAC56F8.03 ; db_xref "SPD:48/48B03" ; systematic_id "SPAC56F8.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL035W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0003924; GTPase activity
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation
GO:0005525; GTP binding
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)" ; gene "SPAC56F8.03" ; product "translation initiation factor IF2 (predicted)" ;
chromosome1 GeneDB mRNA 3541416 3544270 . - . mRNA SPAC1B1.03c ; systematic_id "SPAC1B1.03c" ; colour "2" ; gene "kap95 ||| SPAC1B1.03c" ; Alias "kap95" ; db_xref "SPD:38/38E07" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0051301; cell division
GO:0008565; protein transporter activiy
GO:0005525; GTP binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YLR347C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "kap95" ; product "karyopherin Kap95" ;
chromosome1 GeneDB mRNA 2804406 2808253 . + . mRNA SPAC1805.17 ; systematic_id "SPAC1805.17" ; colour "2" ; gene "crm1 ||| caf2 ||| SPAC1805.17 ||| SPAC1B2.01" ; Alias "crm1" ; db_xref "SPD:30/30C01" ; synonym "caf2 ||| SPAC1B2.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=gene expression, expression cell cycle regulated; db_xref=PMID:9368044; cv=gene_ex; date=19700101 ||| term=target of Leptomycin B; db_xref=PMID:10430904; date=19700101 ||| term=orthologous to S. cerevisiae YGR218W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Chromosome Region Maintenance; date=20090725 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:2647765; date=20100727" ; GO "GO:0005643; nuclear pore
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0008565; protein transporter activity
GO:0071313; cellular response to caffeine
GO:0034599; cellular response to oxidative stress
GO:0051168; nuclear export
GO:0006611; protein export from nucleus
GO:0000055; ribosomal large subunit export from nucleus" ; primary_name "crm1" ; product "importin family nuclear export receptor Crm1" ;
chromosome1 GeneDB mRNA 12158 12994 . + . mRNA SPAC212.08c ; db_xref "SPD:51/51C03" ; systematic_id "SPAC212.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20100104" ; colour "12" ; GO "GO:0009986; cell surface" ; gene "SPAC212.08c" ; product "GPI anchored protein (predicted)" ;
chromosome1 GeneDB mRNA 2633797 2637041 . + . mRNA SPAC7D4.03c ; db_xref "SPD:38/38G12" ; systematic_id "SPAC7D4.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC7D4.03c" ; product "conserved fungal family" ;
chromosome1 GeneDB mRNA 3010087 3010546 . + . mRNA SPAC31G5.21 ; db_xref "SPD:02/02D08" ; systematic_id "SPAC31G5.21" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human FAM32A ortholog; date=20100301" ; colour "10" ; GO "GO:0005730; nucleolus" ; gene "SPAC31G5.21" ; product "human FAM32A homolog" ; note "cellular location and species distribution indicates a likely role in splicing" ;
chromosome1 GeneDB mRNA 1321277 1322321 . + . mRNA SPAC6F12.07 ; systematic_id "SPAC6F12.07" ; colour "7" ; gene "tom20 ||| SPAC6F12.07" ; Alias "tom20" ; db_xref "SPD:11/11F06" ; GO "GO:0015450; protein translocase activity
GO:0030150; protein import into mitochondrial matrix
GO:0005742; mitochondrial outer membrane translocase complex
GO:0005047; signal recognition particle binding
GO:0070096; mitochondrial outer membrane translocase complex assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR082W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tom20" ; product "mitochondrial TOM complex subunit Tom20 (predicted)" ;
chromosome1 GeneDB mRNA 3560548 3562856 . + . mRNA SPAC17A2.05 ; systematic_id "SPAC17A2.05" ; colour "7" ; gene "SPAC17A2.05" ; Alias "osm1" ; db_xref "SPD:36/36H05" ; GO "GO:0016156; fumarate reductase (NADH) activity
GO:0006106; fumarate metabolism
GO:0005739; mitochondrion
GO:0005737; cytoplasm
GO:0006099; tricarboxylic acid cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR051W and YEL047C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "osm1" ; product "fumerate reductase (predicted)" ; reserved_name "osm1" ;
chromosome1 GeneDB mRNA 1719145 1721677 . + . mRNA SPAC664.09 ; systematic_id "SPAC664.09" ; colour "2" ; gene "ggt1 ||| SPAC664.09" ; Alias "ggt1" ; db_xref "SPD:26/26E05" ; GO "GO:0003840; gamma-glutamyltransferase activity
GO:0045454; cell redox homeostasis
GO:0006995; cellular response to nitrogen starvation
GO:0006995; cellular response to nitrogen starvation
GO:0006751; glutathione catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, glutathionuria; date=20060724 ||| term=orthologous to S. cerevisiae YLR299W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ggt1" ; product "gamma-glutamyltranspeptidase Ggt1" ; EC_number "2.3.2.2" ;
chromosome1 GeneDB mRNA 697291 698068 . + . mRNA SPAC22F3.05c ; systematic_id "SPAC22F3.05c" ; colour "2" ; gene "alp41 ||| SPAC22F3.05c" ; Alias "alp41" ; db_xref "SPD:09/09F10" ; GO "GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0030952; establishment and/or maintenance of cytoskeleton polarity
GO:0031110; regulation of microtubule polymerization or depolymerization
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR138W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "alp41" ; product "ADP-ribosylation factor Alp41" ;
chromosome1 GeneDB mRNA 1120548 1123605 . + . mRNA SPAC30D11.01c ; systematic_id "SPAC30D11.01c" ; colour "7" ; gene "SPAC30D11.01c ||| SPAC56F8.01" ; db_xref "SPD:47/47F07" ; synonym "SPAC56F8.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAPB24D3.10c and SPAC922.02c; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "; cell surface
GO:0004558; alpha-glucosidase activity
GO:0044247; cellular polysaccharide catabolism
GO:0009313; oligosaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; product "alpha-glucosidase (predicted)" ; EC_number "3.2.1.-" ;
chromosome1 GeneDB mRNA 644665 646427 . + . mRNA SPAC1D4.04 ; systematic_id "SPAC1D4.04" ; colour "2" ; gene "cct2 ||| SPAC1D4.04" ; Alias "cct2" ; db_xref "SPD:45/45E05" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL142W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cct2" ; product "chaperonin-containing T-complex beta subunit Cct2" ;
chromosome1 GeneDB mRNA 5511137 5512369 . - . mRNA SPAC869.04 ; db_xref "SPD:19/19F07" ; systematic_id "SPAC869.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004328; formamidase activity
GO:0034641; cellular nitrogen compound metabolic process" ; colour "7" ; gene "SPAC869.04" ; product "formamidase-like protein (predicted)" ;
chromosome1 GeneDB mRNA 998646 1002276 . + . mRNA SPAC821.09 ; systematic_id "SPAC821.09" ; colour "2" ; gene "eng1 ||| SPAC821.09" ; Alias "eng1" ; db_xref "SPD:29/29H08" ; GO "GO:0043187; cell septum surface
GO:0009986; cell surface
GO:0042973; glucan endo-1,3-beta-D-glucosidase activity
GO:0000920; cell separation during cytokinesis
GO:0016998; cell wall catabolism
GO:0009313; oligosaccharide catabolism
GO:0030994; primary cell septum disassembly
GO:0030247; polysaccharide binding
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12665550; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:12665550; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YNR067C and YLR144C; date=19700101 ||| term=localization dependent on septin; date=20080511 ||| term=localization dependent on secretory pathway, exocyst; date=20080511 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=misc, target genes transcriptionally co-regulated by Mcs6; db_xref=PMID:19328067; date=20090712 ||| term=misc, target genes transcriptionally co-regulated by Cdk9; db_xref=PMID:19328067; date=20090712 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "eng1" ; product "endo-1,3-beta-glucanase Eng1" ; EC_number "3.2.1.39" ;
chromosome1 GeneDB mRNA 1478412 1481172 . + . mRNA SPAC9.09 ; systematic_id "SPAC9.09" ; colour "2" ; db_xref "SPD:28/28C05" ; Alias "met26" ; controlled_curation "term=orthologous to S. cerevisiae YER091C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=misc, homocysteine accumulation causes a defect in purine biosynthesis; db_xref=PMID:16436428; cv=misc; date=20100217 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009086; methionine biosynthetic process
GO:0003871; 5-methyltetrahydropteroyltriglutamate- ho mocysteineS-methyltra nsferaseactivity
GO:0005737; cytoplasm
GO:0046084; adenine biosynthesis
GO:0044281; small molecule metabolic process" ; primary_name "met26" ; product "homocysteine methyltransferase Met26" ; EC_number "2.1.1.14" ;
chromosome1 GeneDB mRNA 4997617 4999955 . + . mRNA SPAC1952.16 ; systematic_id "SPAC1952.16" ; colour "7" ; gene "rga9 ||| SPAC1952.16" ; db_xref "SPD:28/28D06" ; Alias "rga9" ; GO "GO:0007264; small GTPase mediated signal transduction
GO:0005096; GTPase activator activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Rho GAp family; db_xref=PMID:14506270; cv=name_description; date=20091230" ; primary_name "rga9" ; product "RhoGAP, GTPase activator towards Rho/Rac/Cdc42- like small GTPases (predicted)" ;
chromosome1 GeneDB mRNA 1579722 1582323 . - . mRNA SPAC23H4.15 ; db_xref "SPD:28/28D10" ; systematic_id "SPAC23H4.15" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human TSR1 ortholog; date=20100902" ; colour "7" ; GO "GO:0043021; ribonucleoprotein binding
GO:0006364; rRNA processing
GO:0042254; ribosome biogenesis and assembly
GO:0005737; cytoplasm
GO:0005730; nucleolus" ; gene "SPAC23H4.15" ; product "ribosome biogenesis protein Tsr1 (predicted)" ;
chromosome1 GeneDB mRNA 1632068 1634832 . + . mRNA SPAP27G11.12 ; systematic_id "SPAP27G11.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR436C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20091019 ||| term=human c17orf28 ortholog; date=20100517" ; colour "10" ; gene "SPAP27G11.12" ; product "human c17orf28 ortholog 1" ;
chromosome1 GeneDB mRNA 4060060 4061192 . + . mRNA SPAC19G12.09 ; db_xref "SPD:11/11C05" ; systematic_id "SPAC19G12.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL124W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "2" ; GO "GO:0047018; indole-3-acetaldehyde reductase (NADH) activity
GO:0047019; indole-3-acetaldehyde reductase (NADPH) activity
GO:0051268; alpha-keto amide reductase activity
GO:0051269; alpha-keto ester reductase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016652; oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor" ; gene "SPAC19G12.09" ; product "NADH/NADPH dependent indole-3-acetaldehyde reductase AKR3C2" ;
chromosome1 GeneDB mRNA 2832734 2834876 . + . mRNA SPAC3F10.09 ; systematic_id "SPAC3F10.09" ; colour "7" ; gene "SPAC3F10.09" ; note "possibly his6 from map position" ; db_xref "SPD:18/18F10" ; GO "GO:0000105; histidine biosynthesis
GO:0003949; 1-(5-phosphoribosyl)-5-[(5- phosphoribosy lamino)methylideneamino]imidazole-4- carboxamide isomerase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL020C; date=19700101 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino]imidazole-4-carboxamide isomerase (predicted)" ; EC_number "5.3.1.16" ;
chromosome1 GeneDB mRNA 5189599 5190362 . + . mRNA SPAPJ691.03 ; systematic_id "SPAPJ691.03" ; GO "GO:0005759; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCL057C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human C1orf151 ortholog; date=20100704" ; colour "10" ; gene "SPAPJ691.03" ; product "mitochondrial conserved eukaryotic protein" ;
chromosome1 GeneDB mRNA 2219205 2227348 . - . mRNA SPAC18G6.05c ; db_xref "SPD:34/34D03" ; systematic_id "SPAC18G6.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YGL195W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006448; regulation of translational elongation" ; gene "SPAC18G6.05c" ; product "translation elongation regulator Gcn1 (predicted)" ;
chromosome1 GeneDB mRNA 4779020 4780284 . - . mRNA SPAC11H11.03c ; db_xref "SPD:16/16D11" ; systematic_id "SPAC11H11.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL199C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human N4BP2 ortholog; date=20091118" ; GO "GO:0006281; DNA repair
GO:0046404; ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0004519; endonuclease activity" ; colour "7" ; gene "SPAC11H11.03c" ; product "SMR and DUF1771 domain protein (predicted)" ;
chromosome1 GeneDB mRNA 5565881 5567565 . - . mRNA SPAC750.05c ; systematic_id "SPAC750.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAC977.01 and SPBC1348.02 and SPBPB2B2.19C; date=19700101 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104" ; colour "12" ; gene "SPAC750.05c" ; product "S. pombe specific 5Tm protein family" ;
chromosome1 GeneDB mRNA 3171584 3173345 . - . mRNA SPAC3G9.06 ; systematic_id "SPAC3G9.06" ; colour "7" ; gene "frs2 ||| SPAC3G9.06" ; Alias "frs2" ; db_xref "KEGG:MAP00400; ||| KEGG:MAP00970; ||| SPD:36/36B07" ; GO "GO:0006432; phenylalanyl-tRNA aminoacylation
GO:0004826; phenylalanine-tRNA ligase activity
GO:0005737; cytoplasm
GO:0009328; phenylalanine-tRNA ligase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "frs2" ; product "cytoplasmic phenylalanine-tRNA ligase alpha subunit Frs2 (predicted)" ; EC_number "6.1.1.20" ;
chromosome1 GeneDB mRNA 164728 165717 . + . mRNA SPAC5H10.11 ; systematic_id "SPAC5H10.11" ; colour "7" ; gene "gmh1 ||| SPAC5H10.11" ; Alias "gmh1" ; db_xref "SPD:43/43F10" ; GO "GO:0042125; protein amino acid galactosylation
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "gmh1" ; product "alpha-1,2-galactosyltransferase Gmh1 (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB mRNA 2482438 2484911 . - . mRNA SPAC19A8.03 ; db_xref "SPD:36/36C09" ; systematic_id "SPAC19A8.03" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR110W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004438; phosphatidylinositol-3-phosphatase activity
GO:0016791; phosphoric monoester hydrolase activity
GO:0048017; inositol lipid-mediated signaling
GO:0023034; intracellular signaling cascade
GO:0046856; phosphoinositide dephosphorylation
GO:0016192; vesicle-mediated transport
GO:0046488; phosphatidylinositol metabolic process" ; gene "SPAC19A8.03" ; product "phosphatidylinositol-3-phosphatase, myotubularin family (predicted)" ; EC_number "3.1.3.-" ;
chromosome1 GeneDB mRNA 3109174 3110015 . + . mRNA SPAC589.11 ; systematic_id "SPAC589.11" ; colour "7" ; gene "SPAC589.11 ||| mug82" ; Alias "mug82" ; db_xref "SPD:41/41F09" ; GO "GO:0003747; translation release factor activity
GO:0006415; translational termination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human ICT1 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YOL114C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "mug82" ; product "mitochondrial translation release factor (predicted)" ;
chromosome1 GeneDB mRNA 131241 135695 . - . mRNA SPAC11D3.14c ; db_xref "SPD:39/39C08" ; systematic_id "SPAC11D3.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, divergent duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YKL215C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human OPLAH ortholog; date=20100718" ; colour "10" ; gene "SPAC11D3.14c" ; product "oxoprolinase (predicted)" ;
chromosome1 GeneDB mRNA 2312375 2313090 . - . mRNA SPAC13G7.09c ; db_xref "SPD:42/42A12" ; systematic_id "SPAC13G7.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100126 ||| term=species distribution, conserved in Fungi only; date=20100126 ||| term=species distribution, conserved in Eukaryotes; date=20100126 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100126" ; colour "10" ; product "conserved fungal protein" ;
chromosome1 GeneDB mRNA 5378427 5382811 . + . mRNA SPAC3G6.01 ; systematic_id "SPAC3G6.01" ; colour "2" ; gene "hrp3 ||| SPAC3G6.01" ; Alias "hrp3" ; db_xref "SPD:30/30G04" ; GO "GO:0031934; mating-type region heterochromatin
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0003677; DNA binding
GO:0008094; DNA-dependent ATPase activity
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0000070; mitotic sister chromatid segregation
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0005515; protein binding
GO:0000790; nuclear chromatin
GO:0060303; regulation of nucleosome density" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=helicase C-terminal domain; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=chromodomain protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12127990; date=19700101 ||| term=orthologous to S. cerevisiae YER164W; date=19700101 ||| term=misc, targets correlated with Clr3 and Sir2 targets; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=misc, overlapping genome wide occupancy in coding regions Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=misc, overlapping genome wide occupancy in promoters Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Helicase- Related protein from S. Pombe; cv=name_description; date=20100126 ||| term=human CHD1 and CHD2 ortholog; date=20100908" ; primary_name "hrp3" ; product "ATP-dependent DNA helicase Hrp3" ;
chromosome1 GeneDB mRNA 2209305 2210675 . - . mRNA SPAC18G6.01c ; db_xref "SPD:09/09G02" ; systematic_id "SPAC18G6.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR198C and YHR199C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Fungi only; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC18G6.01c" ; product "calchone related protein family" ;
chromosome1 GeneDB mRNA 2720805 2722578 . + . mRNA SPAPB2B4.05 ; Alias "vma5" ; systematic_id "SPAPB2B4.05" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL080W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000221; vacuolar proton-translocating V-type ATPase, V1 domain
GO:0005524; ATP binding
GO:0007035; vacuolar acidification
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport" ; gene "vma5 ||| SPAPB2B4.05" ; primary_name "vma5" ; product "V-type ATPase V1 subunit C (predicted)" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB mRNA 4555423 4557390 . + . mRNA SPAC637.09 ; db_xref "SPD:26/26C11" ; systematic_id "SPAC637.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR276C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0006396; RNA processing
GO:0005634; nucleus
GO:0008408; 3'-5' exonuclease activity
GO:0000467; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0034415; tRNA 3'trailer cleavage, exonucleolytic
GO:0034476; U5 snRNA 3' end-processing" ; gene "SPAC637.09" ; product "ribonuclease H70 (predicted)" ;
chromosome1 GeneDB mRNA 4969652 4970737 . + . mRNA SPAC1952.02 ; db_xref "SPD:10/10E12" ; systematic_id "SPAC1952.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=orthologous to S. cerevisiae YMR269W; date=19700101 ||| term=human GPATCH4 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; gene "SPAC1952.02" ; product "ribosome biogenesis protein (predicted)" ;
chromosome1 GeneDB mRNA 2611026 2612897 . + . mRNA SPAC7D4.14c ; db_xref "SPD:34/34F12" ; systematic_id "SPAC7D4.14c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC7D4.14c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2083358 2084808 . + . mRNA SPAC3C7.09 ; systematic_id "SPAC3C7.09" ; colour "7" ; gene "set8 ||| SPAC3C7.09" ; Alias "set8" ; db_xref "SPD:22/22D01" ; GO "GO:0016279; protein-lysine N-methyltransferase activity
GO:0006479; protein amino acid methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YHL039W and YPL208W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "set8" ; product "lysine methyltransferase Set8 (predicted)" ;
chromosome1 GeneDB mRNA 4429656 4431699 . + . mRNA SPAC16.04 ; systematic_id "SPAC16.04" ; colour "7" ; gene "dus3 ||| SPAC16.04" ; Alias "dus3" ; db_xref "SPD:26/26F01" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0017150; tRNA dihydrouridine synthase activity
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YLR401C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dus3" ; product "tRNA dihydrouridine synthase Dus3 (predicted)" ;
chromosome1 GeneDB mRNA 4417454 4418608 . + . mRNA SPAC29E6.09 ; systematic_id "SPAC29E6.09" ; colour "8" ; gene "SPAC30.13 ||| SPAC29E6.09" ; Alias "SPAC30.13" ; db_xref "SPD:15/15C02" ; synonym "SPAC30.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "SPAC30.13" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 2851929 2853575 . + . mRNA SPAC3F10.17 ; db_xref "SPD:22/22E07" ; systematic_id "SPAC3F10.17" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0030688; nucleolar preribosome, small subunit precursor
GO:0042254; ribosome biogenesis and assembly
GO:0000056; ribosomal small subunit export from nucleus" ; gene "SPAC3F10.17" ; product "ribosome biogenesis protein Ltv1 (predicted)" ;
chromosome1 GeneDB mRNA 5218745 5219535 . - . mRNA SPAC19D5.05c ; db_xref "SPD:07/07C11" ; systematic_id "SPAC19D5.05c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR148W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0030532; small nuclear ribonucleoprotein complex
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding" ; gene "SPAC19D5.05c" ; product "U3 snoRNP-associated protein Imp3 (predicted)" ;
chromosome1 GeneDB mRNA 4009573 4009818 . - . mRNA SPAC27E2.11c ; db_xref "SPD:01/01B09" ; systematic_id "SPAC27E2.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; colour "8" ; GO "GO:0009986; cell surface" ; gene "SPAC27E2.11c" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 5296049 5297794 . - . mRNA SPAC11E3.08c ; systematic_id "SPAC11E3.08c" ; colour "2" ; gene "nse6 ||| cor1 ||| SPAC11E3.08c" ; Alias "nse6" ; db_xref "SPD:52/52B04" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0048478; replication fork protection
GO:0048478; replication fork protection
GO:0042803; protein homodimerization activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16478984; date=20060504 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; db_xref=PMID:16478984; date=20100727 ||| term=orthologous to S. cerevisiae YER038C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "nse6" ; product "Smc5-6 complex non-SMC subunit Nse6" ;
chromosome1 GeneDB mRNA 4507266 4509905 . - . mRNA SPAC27D7.02c ; db_xref "SPD:28/28B02" ; systematic_id "SPAC27D7.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=GRIP domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR309C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "7" ; GO "GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0005829; cytosol" ; gene "SPAC27D7.02c" ; product "GRIP domain protein (predicted)" ;
chromosome1 GeneDB mRNA 391666 396892 . - . mRNA SPAC31A2.05c ; systematic_id "SPAC31A2.05c" ; colour "2" ; gene "mis4 ||| SPAC31A2.05c" ; db_xref "SPD:31/31B01" ; Alias "mis4" ; GO "GO:0005694; chromosome
GO:0032116; cohesin loading complex
GO:0000794; condensed nuclear chromosome
GO:0030892; mitotic cohesin complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0000084; S phase of mitotic cell cycle
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0007064; mitotic sister chromatid cohesion
GO:0034184; positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0007062; sister chromatid cohesion
GO:0007052; mitotic spindle organization
GO:0070317; negative regulation of G1 to G0 transition
GO:0071921; cohesin localization to chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; db_xref=PMID:7865880; cv=phenotype; date=20100630 ||| term=orthologous to S. cerevisiae YDR180W; date=19700101 ||| term=disease associated, Cornelia de Lange syndrome; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=HEAT repeat; date=20091107 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mis4" ; product "adherin, cohesin loading factor Mis4" ;
chromosome1 GeneDB mRNA 2540247 2540725 . - . mRNA SPAC4A8.02c ; db_xref "SPD:04/04D08" ; systematic_id "SPAC4A8.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100305 ||| term=species distribution, conserved in Fungi; date=20100305 ||| term=species distribution, conserved in Eukaryotes; date=20100305 ||| term=species distribution, conserved in Metazoa; date=20100305 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; colour "10" ; GO "GO:0045132; meiotic chromosome segregation" ; gene "SPAC4A8.02c" ; product "conserved protein, UPF0047 family" ;
chromosome1 GeneDB mRNA 3188360 3190791 . - . mRNA SPAC1486.03c ; db_xref "SPD:28/28E11" ; systematic_id "SPAC1486.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR424w; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "7" ; GO "GO:0000390; spliceosome disassembly
GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spiceosome" ; gene "SPAC1486.03c" ; product "RNA-binding splicing factor (predicted)" ;
chromosome1 GeneDB mRNA 751647 753402 . - . mRNA SPAC22G7.09c ; systematic_id "SPAC22G7.09c" ; colour "2" ; gene "nup45 ||| SPAC22G7.09c" ; Alias "nup45" ; db_xref "SPD:24/24H07" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0051301; cell division" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=FG repeat; date=19700101 ||| term=orthologous to S. cerevisiae YGL172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nup45" ; product "nucleoporin Nup45" ;
chromosome1 GeneDB mRNA 5097850 5098212 . - . mRNA SPAC1250.07 ; Alias "sfc7" ; systematic_id "SPAC1250.07" ; colour "7" ; controlled_curation "term=orthologous to S. cerevisiae YOR110W; db_xref=PMID:17409385; date=20070524 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=warning, new gene; db_xref=PMID:17409385; date=20070412 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; date=20100605" ; GO "GO:0003709; RNA polymerase III transcription factor activity
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0000127; transcription factor TFIIIC complex" ; gene "SPAC1250.07 ||| sfc7" ; primary_name "sfc7" ; product "TFIIIC subunit Sfc7 (predicted)" ;
chromosome1 GeneDB mRNA 2000746 2004811 . + . mRNA SPAC17H9.01 ; systematic_id "SPAC17H9.01" ; colour "2" ; gene "cid16 ||| SPAC17H9.01" ; Alias "cid16" ; db_xref "SPD:48/48E01" ; GO "GO:0004652; polynucleotide adenylyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cid16" ; product "poly(A) polymerase Cid16 (predicted)" ;
chromosome1 GeneDB mRNA 3146948 3150418 . - . mRNA SPAC3G9.14 ; systematic_id "SPAC3G9.14" ; colour "2" ; gene "sak1 ||| SPAC3G9.14" ; Alias "sak1" ; db_xref "SPD:40/40H07" ; GO "GO:0000790; nuclear chromatin
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0016566; specific transcriptional repressor activity
GO:0031536; positive regulation of exit from mitosis
GO:0007346; regulation of progression through mitotic cell cycle
GO:0010553; negative regulation of gene specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YLR176C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:7862141; date=20100708" ; primary_name "sak1" ; product "transcriptional repressor Sak1" ;
chromosome1 GeneDB mRNA 3525291 3526947 . + . mRNA SPAC16E8.13 ; db_xref "SPD:34/34E05" ; systematic_id "SPAC16E8.13" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-UBP type; date=20060726 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YHL010C; date=19700101 ||| term=human BRAP2 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; gene "SPAC16E8.13" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome1 GeneDB mRNA 5158023 5158340 . - . mRNA SPAC26F1.11 ; db_xref "SPD:42/42A05" ; systematic_id "SPAC26F1.11" ; colour "6" ; gene "SPAC26F1.11" ; product "dubious" ; note "ORF in predicted gene free region with (G-C)/(G+C) strand switch ||| 28-11-07, returned to dubious, has no transcript from Affeymetrix or Solexa, very unlikely to be coding" ;
chromosome1 GeneDB mRNA 4284849 4286221 . - . mRNA SPAC2C4.15c ; systematic_id "SPAC2C4.15c" ; colour "2" ; gene "ubx2 ||| ucp13 ||| SPAC2C4.15c" ; Alias "ubx2" ; db_xref "SPD:20/20E08" ; synonym "ucp13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; qualifier=inferred from context; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15120077; date=19700101 ||| term=orthologous to S. cerevisiae YDR330W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005515; protein binding
GO:0043130; ubiquitin binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0006511; ubiquitin-dependent protein catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus" ; primary_name "ubx2" ; product "UBX domain protein Ubx2" ;
chromosome1 GeneDB mRNA 3012474 3014121 . + . mRNA SPAC31G5.14 ; systematic_id "SPAC31G5.14" ; colour "7" ; gene "gcv1 ||| n313 ||| SPAC31G5.14" ; Alias "gcv1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00670; ||| KEGG:MAP00910; ||| SPD:40/40D02" ; synonym "n313" ; GO "GO:0005960; glycine cleavage complex
GO:0005739; mitochondrion
GO:0004047; aminomethyltransferase activity
GO:0008483; transaminase activity
GO:0019464; glycine decarboxylation via glycine cleavage system" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gcv1" ; product "glycine decarboxylase T subunit (predicted)" ; EC_number "2.1.2.10" ;
chromosome1 GeneDB mRNA 2021040 2024618 . - . mRNA SPAC17H9.10c ; systematic_id "SPAC17H9.10c" ; colour "2" ; db_xref "SPD:48/48A11" ; Alias "ddb1" ; GO "GO:0031465; Cul4B-RING ubiquitin ligase complex
GO:0070912; Ddb1-Ckn1 complex
GO:0070913; Ddb1-Wdr21 complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0008180; signalosome complex
GO:0034644; cellular response to UV
GO:0006279; premeiotic DNA synthesis
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0006282; regulation of DNA repair
GO:0007090; regulation of S phase of mitotic cell cycle
GO:0040020; regulation of meiosis
GO:0051445; regulation of progression through meiotic cell cycle
GO:0006974; response to DNA damage stimulus
GO:0006283; transcription-coupled nucleotide- excision repair" ; controlled_curation "term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:15805471; cv=phenotype; date=20090908 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12181326; date=20061128 ||| term=phenotype, mitotic cell cycle defects; db_xref=PMID:15805471; cv=phenotype; date=20090908 ||| term=phenotype, meiotic cell cycle defects; db_xref=PMID:15805471; cv=phenotype; date=20090908 ||| term=phenotype, genome stability defects; db_xref=PMID:15805471; cv=phenotype; date=20090908 ||| term=modification, ubiquitinated; cv=pt_mod; date=20061128 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human DDB1 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=rik1/ddb1 subfamily; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:12181326; date=20100705" ; primary_name "ddb1" ; product "damaged DNA binding protein Ddb1" ;
chromosome1 GeneDB mRNA 1808080 1809291 . - . mRNA SPAC1002.07c ; systematic_id "SPAC1002.07c" ; colour "7" ; gene "ats1 ||| SPAC1002.07c" ; Alias "ats1" ; db_xref "SPD:14/14F09" ; GO "GO:0004145; diamine N-acetyltransferase activity
GO:0006473; protein amino acid actylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20070321 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human SAT2 ortholog; date=20100821" ; primary_name "ats1" ; product "N-acetyltransferase Ats1 (predicted)" ;
chromosome1 GeneDB mRNA 434238 435996 . - . mRNA SPAC13C5.06c ; systematic_id "SPAC13C5.06c" ; colour "8" ; gene "SPAC13C5.06c ||| mug121" ; db_xref "SPD:06/06B12" ; Alias "mug121" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "mug121" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 1621639 1622867 . - . mRNA SPAP27G11.08c ; Alias "meu32" ; systematic_id "SPAP27G11.08c" ; synonym "mug11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=19700101 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "meu32" ; product "sequence orphan Meu32" ;
chromosome1 GeneDB mRNA 3600187 3600971 . - . mRNA SPAC17G6.07c ; db_xref "SPD:42/42H02" ; systematic_id "SPAC17G6.07c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGL098W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005484; SNAP receptor activity
GO:0005789; endoplasmic reticulum membrane" ; gene "SPAC17G6.07c" ; product "SNARE Slt1 (predicted)" ;
chromosome1 GeneDB mRNA 1256432 1258686 . - . mRNA SPAC56E4.06c ; systematic_id "SPAC56E4.06c" ; colour "2" ; gene "ggt2 ||| SPAC56E4.06c" ; Alias "ggt2" ; db_xref "SPD:36/36G04" ; GO "GO:0003840; gamma-glutamyltransferase activity
GO:0006751; glutathione catabolism
GO:0034599; cellular response to oxidative stress
GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, glutathionuria; date=20060724 ||| term=orthologous to S. cerevisiae YLR299W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "ggt2" ; product "gamma-glutamyltranspeptidase Ggt2" ; EC_number "2.3.2.2" ;
chromosome1 GeneDB mRNA 343399 345137 . - . mRNA SPAC12G12.03 ; systematic_id "SPAC12G12.03" ; colour "2" ; gene "cip2 ||| SPAC12G12.03" ; Alias "cip2" ; db_xref "SPD:45/45F08" ; GO "GO:0005737; cytoplasm
GO:0003723; RNA binding
GO:0010610; regulation of mRNA stability in response to oxidative stress
GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16407405; date=19700101 ||| term=orthologous to S. cerevisiae YBL051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:16407405; date=20090213 ||| term=name description, Csx1 Interacting Protein; db_xref=PMID:16407405; date=20100606" ; primary_name "cip2" ; product "RNA-binding protein Cip2" ;
chromosome1 GeneDB mRNA 3592942 3594975 . + . mRNA SPAC17G6.03 ; db_xref "SPD:37/37A04" ; systematic_id "SPAC17G6.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR202W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC17G6.03" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome1 GeneDB mRNA 2701612 2702937 . + . mRNA SPAC644.16 ; db_xref "SPD:22/22G07" ; systematic_id "SPAC644.16" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YGL044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005849; mRNA cleavage factor complex
GO:0003723; RNA binding
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation" ; gene "SPAC644.16" ; product "RNA-binding protein (predicted)" ;
chromosome1 GeneDB mRNA 822262 822923 . - . mRNA SPAC2G11.08c ; systematic_id "SPAC2G11.08c" ; colour "2" ; gene "smn1 ||| yab8 ||| SPAC2G11.08c" ; Alias "smn1" ; db_xref "SPD:05/05B03" ; synonym "yab8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SMN family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10749974; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, motor neurone disease; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, neurological disorders; date=20091123" ; GO "GO:0000387; spliceosomal snRNP biogenesis
GO:0005634; nucleus" ; primary_name "smn1" ; product "SMN family protein Smn1" ;
chromosome1 GeneDB mRNA 5326439 5328194 . - . mRNA SPAP8A3.07c ; systematic_id "SPAP8A3.07c" ; colour "7" ; GO "GO:0003849; 3-deoxy-7-phosphoheptulonate synthase activity
GO:0009073; aromatic amino acid family biosynthesis
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR035W and YBR249C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPAP8A3.07c" ; product "phospho-2-dehydro-3-deoxyheptonate aldolase (predicted)" ; EC_number "2.5.1.54" ;
chromosome1 GeneDB mRNA 2243626 2245166 . + . mRNA SPAC18G6.15 ; systematic_id "SPAC18G6.15" ; colour "2" ; gene "mal3 ||| SPAC18G6.15" ; Alias "mal3" ; db_xref "SPD:14/14C11" ; GO "GO:0000235; astral microtubule
GO:0051285; cell cortex of cell tip
GO:0005737; cytoplasm
GO:0005881; cytoplasmic microtubule
GO:0005881; cytoplasmic microtubule
GO:0005828; kinetochore microtubule
GO:0015630; microtubule cytoskeleton
GO:0015630; microtubule cytoskeleton
GO:0051233; spindle midzone
GO:0051010; microtubule plus-end binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0007019; microtubule depolymerization
GO:0046785; microtubule polymerization
GO:0007018; microtubule-based movement
GO:0008360; regulation of cell shape
GO:0010570; regulation of filamentous growth
GO:0007088; regulation of mitosis
GO:0007088; regulation of mitosis
GO:0007088; regulation of mitosis
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, plus end tracking protein; cv=m_f_g; date=20060411 ||| term=calponin homology (CH) domain; date=19700101 ||| term=orthologous to S. cerevisiae YER016W; date=19700101 ||| term=complementation, functionally complemented by human EB1; cv=complementation; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16394105; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, filament morphology aberrant; qualifier=deletion; db_xref=PMID:19542312; date=20090706" ; primary_name "mal3" ; product "EB1 family Mal3" ;
chromosome1 GeneDB mRNA 2236861 2239226 . - . mRNA SPAC18G6.11c ; systematic_id "SPAC18G6.11c" ; colour "2" ; gene "rrn3 ||| SPAC18G6.11c" ; Alias "rrn3" ; db_xref "SPD:36/36D11" ; GO "GO:0000120; RNA polymerase I transcription factor complex
GO:0006360; transcription from RNA polymerase I promoter
GO:0003701; RNA polymerase I transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12207036; date=19700101 ||| term=orthologous to S. cerevisiae YKL125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rrn3" ; product "ribosomal DNA (rDNA) transcription factor Rrn3" ;
chromosome1 GeneDB mRNA 1335520 1338056 . + . mRNA SPAC6F12.12 ; systematic_id "SPAC6F12.12" ; colour "2" ; gene "par2 ||| pbp2 ||| SPAC6F12.12" ; Alias "par2" ; db_xref "SPD:46/46F01" ; synonym "pbp2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15195092; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YOR014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000159; protein phosphatase type 2A complex
GO:0031029; regulation of septation initiation signaling
GO:0033554; cellular response to stress
GO:0019888; protein phosphatase regulator activity" ; primary_name "par2" ; product "protein phosphatase regulatory subunit Par2" ;
chromosome1 GeneDB mRNA 2331155 2331964 . + . mRNA SPAC6C3.05 ; db_xref "SPD:10/10C10" ; systematic_id "SPAC6C3.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPAC6C3.05" ; product "sequence orphan" ;
chromosome1 GeneDB mRNA 42057 43307 . - . mRNA SPAC977.07c ; systematic_id "SPAC977.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=GLEYA domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; colour "10" ; gene "SPAC977.07c" ; product "cell surface glycoprotein (predicted)" ;
chromosome1 GeneDB mRNA 2893836 2894991 . - . mRNA SPACUNK4.09 ; db_xref "SPD:15/15B12" ; systematic_id "SPACUNK4.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100827" ; colour "10" ; gene "SPACUNK4.09" ; product "conserved protein" ;
chromosome1 GeneDB mRNA 1557147 1558493 . - . mRNA SPAC167.02 ; systematic_id "SPAC167.02" ; colour "2" ; gene "ptb1 ||| SPAC167.02" ; Alias "ptb1" ; db_xref "SPD:18/18F04" ; GO "GO:0018344; protein geranylgeranylation
GO:0005968; Rab-protein geranylgeranyltransferase complex
GO:0004663; Rab-protein geranylgeranyltransferase activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR176C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ptb1" ; product "geranylgeranyltransferase II beta subunit Ptb1" ;
chromosome1 GeneDB mRNA 2639626 2642322 . - . mRNA SPAC4F8.15 ; systematic_id "SPAC4F8.15" ; colour "2" ; gene "itr1 ||| SPAC7D4.01 ||| SPAC4F8.15" ; Alias "itr1" ; db_xref "SPD:35/35F10" ; synonym "SPAC7D4.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR497C and YOL103W and YDR387C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000747; conjugation with cellular fusion
GO:0030437; sporulation (sensu Fungi)" ; primary_name "itr1" ; product "myo-inositol transporter Itr1" ;
chromosome1 GeneDB mRNA 5385779 5387043 . + . mRNA SPAC3G6.04 ; systematic_id "SPAC3G6.04" ; colour "2" ; gene "rnp24 ||| SPAC3G6.04" ; Alias "rnp24" ; db_xref "SPD:43/43G09" ; GO "GO:0003723; RNA binding
GO:0005730; nucleolus
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8598051; date=19700101 ||| term=orthologous to S. cerevisiae YNL175C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rnp24" ; product "RNA-binding protein Rnp24" ;
chromosome1 GeneDB mRNA 3848093 3851006 . - . mRNA SPAC4H3.11c ; systematic_id "SPAC4H3.11c" ; colour "2" ; gene "ppc89 ||| SPAC4H3.11c ||| mug127" ; Alias "ppc89" ; db_xref "SPD:28/28D12" ; synonym "mug127" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; evidence=ISS; db_xref=PMID:16775007; date=20070122 ||| term=name description, Pombe Pole Component; cv=name_description; db_xref=PMID:16775007; date=20070122 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16775007; date=20070122 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20100919 ||| term=species distribution, conserved in Fungi; date=20100919 ||| term=species distribution, conserved in Fungi only; date=20100919 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100919" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005198; structural molecule activity
GO:0000070; mitotic sister chromatid segregation
GO:0007052; mitotic spindle organization and biogenesis
GO:0034613; cellular protein localization
GO:0031028; septation initiation signaling" ; primary_name "ppc89" ; product "spindle pole body protein Ppc89" ;
chromosome1 GeneDB mRNA 2309026 2309958 . + . mRNA SPAC13G7.07 ; systematic_id "SPAC13G7.07" ; colour "2" ; gene "arb2 ||| SPAC13G7.07" ; Alias "arb2" ; db_xref "SPD:07/07B02" ; GO "GO:0033167; ARC complex
GO:0030702; chromatin silencing at centromere
GO:0031047; RNA-mediated gene silencing
GO:0033168; RNA interference, conversion of ds siRNA to ss siRNA
GO:0035197; siRNA binding
GO:0030148; chromatin silencing by small RNA" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070323 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:17310250; date=20072303" ; primary_name "arb2" ; product "argonaute binding protein 2" ;
chromosome1 GeneDB mRNA 954260 956626 . - . mRNA SPAC222.07c ; systematic_id "SPAC222.07c" ; colour "2" ; gene "hri2 ||| SPAC222.07c" ; Alias "hri2" ; db_xref "SPD:37/37D05" ; GO "GO:0005515; protein binding
GO:0032057; negative regulation of translational initiation in response to stress
GO:0006468; protein amino acid phosphorylation
GO:0006468; protein amino acid phosphorylation
GO:0033554; cellular response to stress
GO:0005524; ATP binding
GO:0004694; eukaryotic translation initiation factor 2 alpha kinase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12242291; date=19700101 ||| term=HRI subfamily; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18502752; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Tif211; qualifier=phosphorylates; db_xref=PMID:12242291; date=20100820" ; primary_name "hri2" ; product "eIF2 alpha kinase Hri2" ;
chromosome1 GeneDB mRNA 3254533 3258269 . - . mRNA SPAC6G9.06c ; systematic_id "SPAC6G9.06c" ; colour "2" ; db_xref "SPD:39/39B07" ; Alias "pcp1" ; GO "GO:0000930; gamma-tubulin complex
GO:0005816; spindle pole body
GO:0005516; calmodulin binding
GO:0000070; mitotic sister chromatid segregation
GO:0007020; microtubule nucleation
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0005515; protein binding
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11864908; date=20080414 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; db_xref=PMID:11864908; date=19700101 ||| term=orthologous to S. cerevisiae YDR356W; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:11864908; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pole target of Calmodulin in Pombe; cv=name_description; date=20100203" ; primary_name "pcp1" ; product "pericentrin Pcp1" ;
chromosome1 GeneDB mRNA 1782880 1785113 . - . mRNA SPAC17A5.15c ; systematic_id "SPAC17A5.15c" ; colour "7" ; gene "SPAC17A5.15c" ; note "Probably cytoplasmic as the mitochondrial glutamate- tRNA ligase has been identified (SPAPB1A10.11C)" ; db_xref "KEGG:MAP00251; ||| KEGG:MAP00860; ||| KEGG:MAP00970; ||| SPD:37/37E12" ; GO "GO:0006424; glutamyl-tRNA aminoacylation
GO:0004818; glutamate-tRNA ligase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL245W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "glutamate-tRNA ligase (predicted)" ; EC_number "6.1.1.17" ;
chromosome1 GeneDB mRNA 2694717 2697430 . + . mRNA SPAC644.12 ; systematic_id "SPAC644.12" ; colour "2" ; gene "cdc5 ||| SPAC644.12" ; Alias "cdc5" ; db_xref "SPD:38/38E01" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005681; spliceosome complex
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8313892; date=19700101 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; qualifier=ts; db_xref=PMID:958201; date=20100705 ||| term=orthologous to S. cerevisiae YMR213W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cdc5" ; product "cell division control protein, splicing factor Cdc5" ;
chromosome1 GeneDB mRNA 949517 950181 . + . mRNA SPAC222.19 ; Alias "tam1" ; systematic_id "SPAC222.19" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; colour "8" ; primary_name "tam1" ; gene "SPAC222.19" ; product "sequence orphan" ; note "new gene; conserved in japonicus" ;
chromosome1 GeneDB mRNA 5173864 5174644 . - . mRNA SPAC26F1.06 ; systematic_id "SPAC26F1.06" ; colour "2" ; gene "gpm1 ||| SPAC26F1.06" ; Alias "gpm1" ; db_xref "SPD:07/07C08" ; GO "GO:0006096; glycolysis
GO:0005829; cytosol
GO:0004619; phosphoglycerate mutase activity
GO:0006094; gluconeogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL152C and YDL021W and YOL056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "gpm1" ; product "monomeric 2,3-bisphosphoglycerate (BPG)- dependent phosphoglycerate mutase (PGAM), Gpm1" ; EC_number "5.4.2.1" ;
chromosome1 GeneDB mRNA 2284490 2286030 . - . mRNA SPAC4G9.17c ; systematic_id "SPAC4G9.17c" ; colour "7" ; gene "SPAC4G9.17c ||| mrps5" ; Alias "mrps5" ; db_xref "SPD:22/22D05" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR251W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrps5" ; product "mitochondrial ribosomal protein subunit S5 (predicted)" ;
chromosome1 GeneDB mRNA 3893233 3895608 . - . mRNA SPAC926.06c ; db_xref "SPD:36/36H08" ; systematic_id "SPAC926.06c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; colour "10" ; gene "SPAC926.06c" ; product "leucine-rich repeat protein, unknown" ;
chromosome1 GeneDB mRNA 165947 167706 . - . mRNA SPAC5H10.12c ; db_xref "SPD:43/43G11" ; systematic_id "SPAC5H10.12c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR320C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008375; acetylglucosaminyltransferase activity
GO:0006487; protein amino acid N-linked glycosylation
GO:0005794; Golgi apparatus" ; gene "SPAC5H10.12c" ; product "acetylglucosaminyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome1 GeneDB mRNA 3236417 3237503 . - . mRNA SPAC6G10.10c ; db_xref "SPD:06/06C12" ; systematic_id "SPAC6G10.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPAC6G10.10c" ; product "human hmmtag2 homolog" ;
chromosome1 GeneDB mRNA 241187 243001 . - . mRNA SPAC806.04c ; db_xref "SPD:24/24E12" ; systematic_id "SPAC806.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c6orf211 ortholog; date=20100718" ; colour "10" ; gene "SPAC806.04c" ; product "DUF89 family protein" ;
chromosome1 GeneDB mRNA 2566866 2572582 . - . mRNA SPAC4A8.11c ; systematic_id "SPAC4A8.11c" ; colour "2" ; gene "fas2 ||| lsd1 ||| SPAC4A8.11c" ; Alias "fas2" ; db_xref "SPD:49/49H08" ; synonym "lsd1" ; GO "GO:0005835; fatty acid synthase complex
GO:0004315; 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0004321; fatty-acyl-CoA synthase activity
GO:0008897; phosphopantetheinyltransferase activity
GO:0006633; fatty acid biosynthesis
GO:0004316; 3-oxoacyl-[acyl-carrier-protein] reductase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL231W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Large and Small Daughter nuclei; date=20100727 ||| term=warning, gene name conflict; date=20100727" ; primary_name "fas2" ; product "fatty acid synthase alpha subunit Lsd1" ; EC_number "2.3.1.41" ;
chromosome1 GeneDB mRNA 1263803 1265727 . - . mRNA SPAC1420.02c ; systematic_id "SPAC1420.02c" ; colour "2" ; gene "cct5 ||| SPAC1420.02c" ; Alias "cct5" ; db_xref "SPD:26/26B08" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR064W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cct5" ; product "chaperonin-containing T-complex epsilon subunit Cct5" ;
chromosome1 GeneDB mRNA 305645 306690 . + . mRNA SPAC18B11.07c ; systematic_id "SPAC18B11.07c" ; colour "2" ; gene "rhp6 ||| ubc2 ||| SPAC18B11.07c" ; Alias "rhp6" ; db_xref "SPD:11/11F12" ; synonym "ubc2 ||| sng1" ; GO "GO:0033503; HULC complex
GO:0033503; HULC complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0004842; ubiquitin-protein ligase activity
GO:0006336; DNA replication-independent nucleosome assembly
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0031497; chromatin assembly
GO:0006338; chromatin remodeling
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006342; chromatin silencing
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0051568; histone H3-K4 methylation
GO:0006301; postreplication repair
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0031144; proteasome localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA damage checkpoint defects; qualifier=caffeine_mediated_override|required; required; db_xref=PMID:10224243; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9710635; date=20100727 ||| term=orthologous to S. cerevisiae YGL058W; date=19700101 ||| term=target is Cut8; db_xref=PMID:16096059; date=19700101 ||| term=target is Mei2; db_xref=PMID:11702950; date=20071120 ||| term=misc, chromatin assembly function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17374714; date=20070716 ||| term=misc, chromatin silencing function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17363370; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rhp6" ; product "Rad6 homolog, ubiquitin conjugating enzyme E2 Rhp6" ; EC_number "6.3.2.19" ;
chromosome1 GeneDB mRNA 313952 315279 . + . mRNA SPAC18B11.02c ; db_xref "SPD:18/18G09" ; systematic_id "SPAC18B11.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL036C and YOL066C; qualifier=N_term; date=19700101 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20080326" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0009982; pseudouridine synthase activity
GO:0031119; tRNA pseudouridine synthesis" ; gene "SPAC18B11.02c" ; product "tRNA pseudouridylate synthase (predicted)" ;
chromosome1 GeneDB mRNA 3361547 3365548 . - . mRNA SPAC26A3.13c ; Alias "Tf2-4" ; systematic_id "SPAC26A3.13c" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "Tf2-4 ||| SPAC26A3.13c" ; primary_name "Tf2-4" ; product "retrotransposable element" ;
chromosome1 GeneDB mRNA 4799587 4802640 . + . mRNA SPAC22F8.08 ; systematic_id "SPAC22F8.08" ; colour "2" ; gene "SPAC22F8.08" ; Alias "sec24" ; db_xref "SPD:29/29D08" ; synonym "sfb2" ; GO "GO:0030127; COPII vesicle coat
GO:0006886; intracellular protein transport
GO:0006914; autophagy
GO:0070971; endoplasmic reticulum exit site
GO:0090110; cargo loading into COPII-coated vesicle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL109C and YNL049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec24" ; product "COPII cargo receptor Sec24/Sfb2 subunit" ;
chromosome1 GeneDB mRNA 2515051 2515985 . - . mRNA SPAC23H3.12c ; db_xref "SPD:42/42H10" ; systematic_id "SPAC23H3.12c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL183C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0071805; potassium ion transmembrane transport
GO:0015992; proton transport" ; gene "SPAC23H3.12c" ; product "mitochondrial hydrogen/potassium transport system protein (predicted)" ;
chromosome1 GeneDB mRNA 3262462 3268008 . - . mRNA SPAC6G9.10c ; systematic_id "SPAC6G9.10c" ; colour "2" ; gene "sen1 ||| SPAC6G9.10c" ; Alias "sen1" ; db_xref "SPD:31/31B03" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0043141; ATP-dependent 5'-3' DNA helicase activity
GO:0032575; ATP-dependent 5'-3' RNA helicase activity
GO:0008094; DNA-dependent ATPase activity
GO:0003717; RNA polymerase II transcription termination factor activity
GO:0008186; RNA-dependent ATPase activity
GO:0006364; rRNA processing
GO:0016180; snRNA processing
GO:0043144; snoRNA processing
GO:0008033; tRNA processing
GO:0006369; transcription termination from RNA polymerase II promoter
GO:0035649; Nrd1 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YLR430W; date=19700101 ||| term=disease associated, Ataxia- ocular apraxia 2; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, neurological disorders; date=20091123" ; primary_name "sen1" ; product "ATP-dependent 5' to 3' DNA/RNA helicase Sen1" ;
chromosome1 GeneDB mRNA 4395836 4400452 . - . mRNA SPAC30.04c ; systematic_id "SPAC30.04c" ; colour "2" ; gene "abc4 ||| SPAC30.04c" ; Alias "abc4" ; db_xref "SPD:30/30H01" ; GO "GO:0071996; glutathione import into vacuole
GO:0000329; vacuolar membrane
GO:0071997; glutathione S-conjugate transporting ATPase activity
GO:0005524; ATP binding
GO:0071276; cellular response to cadmium ion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=MDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YLL048C and YDR135C and YLL015W and YHL035C and YGR281W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "abc4" ; product "glutathione S-conjugate-exporting ATPase Abc4" ;
chromosome1 GeneDB mRNA 5562608 5563045 . - . mRNA SPAC750.03c ; systematic_id "SPAC750.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC1348.04 and SPAC977.03; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=warning, possible horizontal transfer; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100902" ; colour "10" ; gene "SPAC750.03c" ; product "methyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 1498925 1500029 . + . mRNA SPAC5D6.08c ; systematic_id "SPAC5D6.08c" ; colour "2" ; gene "mes1 ||| SPAC5D6.08c" ; Alias "mes1" ; db_xref "SPD:02/02G08" ; GO "GO:0007067; mitosis
GO:0005515; protein binding
GO:0051442; negative regulation of ubiquitin ligase activity during meiotic cell cycle
GO:0051442; negative regulation of ubiquitin ligase activity during meiotic cell cycle
GO:0007138; meiotic anaphase II
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:8082199; cv=gene_ex; date=20060106 ||| term=gene expression, meiosis- specific splicing; qualifier=5'_UTR dependent; db_xref=PMID:11459187; date=20060106 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mes1" ; product "meiosis II protein Mes1" ;
chromosome1 GeneDB mRNA 3669130 3671497 . - . mRNA SPAC8C9.15c ; systematic_id "SPAC8C9.15c" ; colour "7" ; gene "tif225 ||| SPAC8C9.15c" ; Alias "tif225" ; db_xref "SPD:37/37H05" ; GO "GO:0005851; eukaryotic translation initiation factor 2B complex
GO:0006413; translational initiation
GO:0003743; translation initiation factor activity
GO:0005085; guanyl-nucleotide exchange factor activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, leukoencephalopathy; date=20060926 ||| term=orthologous to S. cerevisiae YDR211W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, neurological disorders; date=20060926" ; primary_name "tif225" ; product "translation initiation factor eIF2B epsilon subunit (predicted)" ;
chromosome1 GeneDB mRNA 255881 259448 . - . mRNA SPAC1639.02c ; systematic_id "SPAC1639.02c" ; colour "2" ; gene "trk2 ||| SPAC1639.02c ||| SPAC1F5.12" ; Alias "trk2" ; db_xref "SPD:30/30D11" ; synonym "SPAC1F5.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL129C and YKR050W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0015079; potassium ion transporter activity
GO:0006813; potassium ion transport
GO:0030007; potassium ion homeostasis
GO:0042391; regulation of membrane potential
GO:0042493; response to drug
GO:0071473; cellular response to cation stress" ; primary_name "trk2" ; product "potassium ion transporter Trk2" ;
chromosome1 GeneDB mRNA 3801229 3801717 . - . mRNA SPAC1556.05c ; systematic_id "SPAC1556.05c" ; colour "7" ; gene "SPAC1556.05c ||| cgr1" ; Alias "cgr1" ; db_xref "SPD:04/04C10" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL029W; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=warning, non-consensus branch site; date=20100731" ; primary_name "cgr1" ; product "ribosome biogenesis CGR1 family (predicted)" ;
chromosome1 GeneDB mRNA 4083686 4084596 . + . mRNA SPAC23A1.03 ; systematic_id "SPAC23A1.03" ; colour "7" ; gene "apt1 ||| SPAC23A1.03" ; Alias "apt1" ; db_xref "SPD:09/09A10" ; GO "GO:0003999; adenine phosphoribosyltransferase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006168; adenine salvage
GO:0006167; AMP biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, urolithiasis; date=20060920 ||| term=orthologous to S. cerevisiae YML022W and YDR441C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "apt1" ; product "adenine phosphoribosyltransferase (APRT) (predicted)" ; EC_number "2.4.2.7" ;
chromosome1 GeneDB mRNA 5256747 5259282 . + . mRNA SPAC14C4.14 ; systematic_id "SPAC14C4.14" ; colour "2" ; gene "atp1 ||| SPAC14C4.14" ; Alias "atp1" ; db_xref "SPD:37/37C03" ; GO "GO:0005754; proton-transporting ATP synthase, catalytic core (sensu Eukaryota)
GO:0005524; ATP binding
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL099W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp1" ; product "F1-ATPase alpha subunit" ; EC_number "3.6.3.14" ;
chromosome1 GeneDB mRNA 2496019 2497672 . - . mRNA SPAC23H3.03c ; systematic_id "SPAC23H3.03c" ; colour "7" ; gene "npr2 ||| SPAC23H3.03c" ; Alias "npr2" ; db_xref "SPD:22/22H04" ; GO "GO:0032006; regulation of TOR signalling pathway
GO:0034198; cellular reponse to amino acid starvation
GO:0070881; regulation of proline transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL062W; date=19700101 ||| term=human NPRL2 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20090821 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "npr2" ; product "Npr2/3 complex subunit Npr2 (predicted)" ;
chromosome1 GeneDB mRNA 4166212 4167697 . - . mRNA SPAC25B8.07c ; db_xref "SPD:02/02A10" ; systematic_id "SPAC25B8.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPAC25B8.07c" ; product "hypoxia induced family protein" ;
chromosome1 GeneDB mRNA 4394376 4395639 . - . mRNA SPAC30.03c ; systematic_id "SPAC30.03c" ; colour "2" ; gene "tsn1 ||| SPAC30.03c ||| mug90" ; Alias "tsn1" ; db_xref "SPD:43/43E06" ; synonym "tsn ||| mug90" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=subunit composition, octomeric; cv=subunit_composition; db_xref=PMID:16043634; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=DNA binding specificity, binds d(GT)n; db_xref=PMID:16043634; date=19700101 ||| term=DNA binding specificity, binds d(GTT)n; db_xref=PMID:16043634; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:18062930; date=20080829 ||| term=gene expression, post transcriptional regulation of Tsn1 expression; db_xref=PMID:18062930; date=20080829 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0043047; single-stranded telomeric DNA binding
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0005634; nucleus
GO:0000724; double-strand break repair via homologous recombination
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0006259; DNA metabolic process" ; primary_name "tsn1" ; product "translin" ;
chromosome1 GeneDB mRNA 1495270 1498485 . + . mRNA SPAC5D6.09c ; systematic_id "SPAC5D6.09c" ; colour "7" ; gene "SPAC5D6.09c ||| mug86" ; Alias "mug86" ; db_xref "SPD:12/12F09" ; GO "GO:0005886; plasma membrane
GO:0015123; acetate transmembrane transporter activity
GO:0006847; plasma membrane acetate transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR010C and YNR002C and YDR384C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100103 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Bacteria; date=20100827" ; primary_name "mug86" ; product "acetate transmembrane transporter (predicted)" ;
chromosome1 GeneDB mRNA 1656172 1658318 . + . mRNA SPAC343.10 ; systematic_id "SPAC343.10" ; colour "2" ; gene "met11 ||| mthfr2 ||| SPAC343.10" ; Alias "met11" ; db_xref "SPD:26/26G12" ; synonym "mthfr2" ; GO "GO:0005737; cytoplasm
GO:0004489; methylenetetrahydrofolate reductase (NADPH) activity
GO:0006555; methionine biopsynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, homocyctinuria; date=20060724 ||| term=orthologous to S. cerevisiae YPL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "met11" ; product "methylenetetrahydrofolate reductase Met11" ; EC_number "1.5.1.20" ;
chromosome1 GeneDB mRNA 716940 717871 . - . mRNA SPAC1296.05c ; db_xref "SPD:11/11E12" ; systematic_id "SPAC1296.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0000079; regulation of cyclin-dependent protein kinase activity" ; gene "SPAC1296.05c" ; product "cyclin L family cyclin (predicted)" ;
chromosome1 GeneDB mRNA 2140379 2141698 . + . mRNA SPAC23C11.05 ; systematic_id "SPAC23C11.05" ; colour "10" ; gene "SPAC23C11.05" ; db_xref "SPD:11/11G01" ; obsolete_name "ppa ||| ppa1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR011C and YMR267W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0004427; inorganic diphosphatase activity
GO:0005829; cytosol
GO:0005737; cytoplasm" ; product "inorganic pyrophosphatase (predicted)" ; EC_number "3.6.1.1" ;
chromosome1 GeneDB mRNA 1840621 1841283 . + . mRNA SPAC1399.04c ; db_xref "SPD:41/41E02" ; systematic_id "SPAC1399.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; GO "GO:0004845; uracil phosphoribosyltransferase activity
GO:0008655; pyrimidine salvage" ; gene "SPAC1399.04c" ; product "uracil phosphoribosyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 346786 350031 . + . mRNA SPAC12G12.01c ; systematic_id "SPAC12G12.01c" ; colour "10" ; gene "SPAC12G12.01c ||| SPAC630.02" ; db_xref "SPD:47/47B04" ; synonym "SPAC630.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); qualifier=inferred from context; date=20060726 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL104C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; product "ubiquitin-protein ligase E3" ;
chromosome1 GeneDB mRNA 4966955 4967894 . - . mRNA SPAC1B3.18c ; systematic_id "SPAC1B3.18c" ; colour "7" ; gene "SPAC1B3.18c ||| mrps18" ; Alias "mrps18" ; db_xref "SPD:07/07G01" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL306W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "mrps18" ; product "mitochondrial ribosomal protein subunit S18 (predicted)" ;
chromosome1 GeneDB mRNA 2650738 2657940 . + . mRNA SPAC4F8.12c ; systematic_id "SPAC4F8.12c" ; colour "2" ; gene "spp42 ||| cwf6 ||| SPAC4F8.12c" ; Alias "spp42" ; db_xref "SPD:34/34C11" ; synonym "cwf6" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YHR165C; date=19700101 ||| term=disease associated, retinitis pigmentosa; date=20080305 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005682; snRNP U5
GO:0000393; spliceosomal conformational changes to generate catalytic conformation
GO:0004843; ubiquitin-specific protease activity" ; primary_name "spp42" ; product "U5 snRNP complex subunit Spp42" ;
chromosome1 GeneDB mRNA 2073953 2076923 . - . mRNA SPAC3C7.06c ; systematic_id "SPAC3C7.06c" ; colour "2" ; gene "pit1 ||| SPAC3C7.06c" ; Alias "pit1" ; db_xref "SPD:27/27A01" ; GO "GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL106W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pit1" ; product "serine/threonine protein kinase, meiotic Pit1" ;
chromosome1 GeneDB mRNA 4206690 4208175 . - . mRNA SPAC694.04c ; db_xref "SPD:44/44C05" ; systematic_id "SPAC694.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER156C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=human c12orf10 ortholog; date=20100718" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC694.04c" ; product "conserved eukaryotic protein" ;
chromosome1 GeneDB mRNA 4944132 4945814 . - . mRNA SPAC1B3.09c ; db_xref "SPD:25/25E09" ; systematic_id "SPAC1B3.09c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR206W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030691; Noc2p-Noc3p complex
GO:0005730; nucleolus
GO:0042254; ribosome biogenesis
GO:0000054; ribosome export from nucleus
GO:0030690; Noc1p-Noc2p complex" ; gene "SPAC1B3.09c" ; product "Noc2p-Noc3p complex subunit Noc2 family (predicted)" ;
chromosome1 GeneDB mRNA 3344784 3345770 . + . mRNA SPAC26A3.06 ; db_xref "SPD:14/14A12" ; systematic_id "SPAC26A3.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0016435; rRNA (guanine) methyltranferase activity
GO:0000154; rRNA modification" ; gene "SPAC26A3.06" ; product "rRNA (guanine) methyltransferase (predicted)" ;
chromosome1 GeneDB mRNA 3258472 3259477 . - . mRNA SPAC6G9.07c ; systematic_id "SPAC6G9.07c" ; colour "2" ; gene "arc4 ||| SPAC6G9.07c" ; Alias "arc4" ; obsolete_name "arp10" ; db_xref "SPD:11/11G09" ; GO "GO:0000147; actin cortical patch assembly
GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "arc4" ; product "ARP2/3 actin-organizing complex subunit Arc4" ;
chromosome1 GeneDB mRNA 593955 597531 . - . mRNA SPAC3H8.05c ; systematic_id "SPAC3H8.05c" ; colour "7" ; db_xref "SPD:48/48B10" ; Alias "mms1" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR164W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; GO "GO:0000151; ubiquitin ligase complex
GO:0070651; nonfunctional rRNA decay
GO:0000725; recombinational repair
GO:0031297; replication fork processing" ; primary_name "mms1" ; product "E3 ubiquitin ligase complex subunit Mms1 (predicted)" ;
chromosome1 GeneDB mRNA 2625316 2625855 . + . mRNA SPAC7D4.07c ; systematic_id "SPAC7D4.07c" ; colour "2" ; gene "trx1 ||| SPAC7D4.07c" ; Alias "trx1" ; obsolete_name "trx2" ; db_xref "SPD:01/01F01" ; GO "GO:0005737; cytoplasm
GO:0016209; antoioxidant activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0015035; protein disulfide oxidoreductase activity
GO:0006467; protein thiol-disulfide exchange
GO:0034614; cellular response to reactive oxygen species
GO:0090329; regulation of DNA-dependent DNA replication" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YLR043C and YGR209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "trx1" ; product "cytosolic thioredoxin Trx1" ;
chromosome1 GeneDB mRNA 2215667 2217090 . + . mRNA SPAC18G6.03 ; systematic_id "SPAC18G6.03" ; colour "2" ; gene "ypt3 ||| SPAC18G6.03" ; Alias "ypt3" ; db_xref "SPD:13/13C02" ; GO "GO:0005737; cytoplasm
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0031505; cell wall organization and biogenesis
GO:0033205; cell cycle cytokinesis
GO:0006887; exocytosis
GO:0006886; intracellular protein transport
GO:0007264; small GTPase mediated signal transduction
GO:0042144; vacuole fusion, non-autophagic" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:2328721; date=19700101 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:17287513; date=20100917 ||| term=Ypt subfamily; date=19700101 ||| term=modification, gerenylgerenylated; cv=pt_mod; db_xref=PMID:1597466; date=19700101 ||| term=orthologous to S. cerevisiae YER031C and YGL210W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ypt3" ; product "GTPase Ypt3" ;
chromosome1 GeneDB mRNA 377915 381382 . - . mRNA SPAC1751.01c ; systematic_id "SPAC1751.01c" ; colour "2" ; gene "gti1 ||| SPAC1751.01c" ; Alias "gti1" ; db_xref "SPD:37/37G01" ; GO "GO:0035432; positive regulation of gluconate transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL007W and YHR177W; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202" ; primary_name "gti1" ; product "gluconate transporter inducer Gti1" ;
chromosome1 GeneDB mRNA 1997255 1999536 . - . mRNA SPAC767.01c ; systematic_id "SPAC767.01c" ; colour "2" ; gene "vps1 ||| SPAC9G1.14c ||| SPAC767.01c" ; note "term=WARNING discrepancy between published sequence and genome sequence the genome sequence is almost certainly incorrect and will be checked and fixed in the next round of sequencing updates; qualifier=pending; db_xref=PMID:18088324; date=20080116" ; Alias "vps1" ; db_xref "SPD:27/27G07" ; synonym "SPAC9G1.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR001C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:18088324; date=20090202 ||| term=phenotype, resistance to thiabendazole, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421" ; GO "GO:0005737; cytoplasm
GO:0003924; GTPase activity
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0006944; membrane fusion
GO:0007031; peroxisome organization and biogenesis
GO:0045053; protein retention in Golgi
GO:0006623; protein targeting to vacuole
GO:0003774; motor activity" ; primary_name "vps1" ; product "dynamin family protein Vps1" ;
chromosome1 GeneDB mRNA 4362493 4364980 . + . mRNA SPAC23D3.12 ; db_xref "SPD:35/35B05" ; systematic_id "SPAC23D3.12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML123C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0005315; inorganic phosphate transporter activity
GO:0035435; phosphate transmembrane transport" ; gene "SPAC23D3.12" ; product "inorganic phosphate transporter (predicted)" ;
chromosome1 GeneDB mRNA 1043088 1044132 . - . mRNA SPAC23C4.09c ; db_xref "SPD:11/11C04" ; systematic_id "SPAC23C4.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003690; double-stranded DNA binding" ; gene "SPAC23C4.09c" ; product "DNA-binding TFAR19-related protein (predicted)" ;
chromosome1 GeneDB mRNA 2033638 2033955 . - . mRNA SPAC17H9.18c ; db_xref "SPD:42/42A04" ; systematic_id "SPAC17H9.18c" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPAC17H9.18c" ; product "dubious" ;
chromosome1 GeneDB mRNA 3042749 3043325 . - . mRNA SPAC24C9.16c ; systematic_id "SPAC24C9.16c" ; colour "7" ; gene "cox8 ||| SPAC24C9.16c" ; Alias "cox8" ; db_xref "SPD:05/05A03" ; GO "GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration
GO:0005751; respiratory chain complex IV (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR395C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cox8" ; product "cytochrome c oxidase subunit VIII (predicted)" ;
chromosome1 GeneDB mRNA 2254462 2255670 . + . mRNA SPAC4G9.02 ; systematic_id "SPAC4G9.02" ; colour "7" ; gene "SPAC4G9.02 ||| rnh201" ; Alias "rnh201" ; db_xref "SPD:14/14B04" ; GO "GO:0005634; nucleus
GO:0032299; ribonuclease H2 complex
GO:0004523; ribonuclease H activity
GO:0043137; DNA replication, removal of RNA primer
GO:0006261; DNA replication" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL072W; date=19700101 ||| term=disease associated, Aicardi- Goutieres syndrome; date=20080529 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091123 ||| term=disease associated, leukodystrophy; date=20091123" ; primary_name "rnh201" ; product "ribonuclease H2 complex subunit Rnh201 (predicted)" ; EC_number "3.1.26.4" ;
chromosome1 GeneDB mRNA 1019248 1020646 . - . mRNA SPAC139.02c ; systematic_id "SPAC139.02c" ; colour "7" ; gene "SPAC139.02c ||| oac1" ; Alias "oac1" ; db_xref "SPD:13/13F07" ; GO "GO:0000227; oxaloacetate carrier activity
GO:0008271; sulfate porter activity
GO:0015729; oxaloacetate transport
GO:0008272; sulfate transport
GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL120W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=19700101" ; primary_name "oac1" ; product "mitochondrial anion transporter (predicted)" ;
chromosome1 GeneDB mRNA 2377056 2378596 . + . mRNA SPAC22H10.04 ; db_xref "SPD:17/17C09" ; systematic_id "SPAC22H10.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006470; protein amino acid dephosphorylation
GO:0004722; protein phosphatase type 2A activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPAC22H10.04" ; product "protein phosphatase type 2A (predicted)" ; EC_number "3.1.3.16" ;
chromosome2 GeneDB Contig 1 4539804 . + . Sequence chromosome2 ; Alias chromosome2
chromosome2 GeneDB source 1 4539804 . + . source chromosome2 ; systematic_id "chromosome2" ; origid "chromosome2" ; chromosome "2" ; so_type "chromosome" ;
chromosome2 GeneDB misc_feature 54542 54547 . - . misc_feature SPBPB8B6.05c ; algorithm "DGPI v2.04" ; colour "" ; coord "341,342" ; type "GPI-Anchor" ; cleavage "2.1199" ; note "GPI-Anchor Signal predicted for SPBPB8B6.05c by DGPI v2.04 with cleavage site probability 2.1199 near 341" ;
chromosome2 GeneDB misc_feature 77347 77352 . + . misc_feature SPBPB21E7.09 ; algorithm "DGPI v2.04" ; colour "" ; coord "344,345" ; type "GPI-Anchor" ; cleavage "0.5814" ; note "GPI-Anchor Signal predicted for SPBPB21E7.09 by DGPI v2.04 with cleavage site probability 0.5814 near 344" ;
chromosome2 GeneDB misc_feature 188750 188755 . + . misc_feature SPBC1198.08 ; algorithm "DGPI v2.04" ; colour "" ; coord "441,442" ; type "GPI-Anchor" ; cleavage "0.78000003" ; note "GPI-Anchor Signal predicted for SPBC1198.08 by DGPI v2.04 with cleavage site probability 0.78000003 near 441" ;
chromosome2 GeneDB misc_feature 246582 246587 . + . misc_feature SPBC31E1.04 ; algorithm "DGPI v2.04" ; colour "" ; coord "289,290" ; type "GPI-Anchor" ; cleavage "0.24939999" ; note "GPI-Anchor Signal predicted for SPBC31E1.04 by DGPI v2.04 with cleavage site probability 0.24939999 near 288" ;
chromosome2 GeneDB misc_feature 471645 471650 . + . misc_feature SPBC428.14 ; algorithm "DGPI v2.04" ; colour "" ; coord "332,333" ; type "GPI-Anchor" ; cleavage "0.103199996" ; note "GPI-Anchor Signal predicted for SPBC428.14 by DGPI v2.04 with cleavage site probability 0.103199996 near 332" ;
chromosome2 GeneDB misc_feature 511315 511320 . - . misc_feature SPBC1685.07c ; algorithm "DGPI v2.04" ; colour "" ; coord "383,384" ; type "GPI-Anchor" ; cleavage "1.1019999" ; note "GPI-Anchor Signal predicted for SPBC1685.07c by DGPI v2.04 with cleavage site probability 1.1019999 near 383" ;
chromosome2 GeneDB misc_feature 811503 811508 . - . misc_feature SPBC530.10c ; algorithm "DGPI v2.04" ; colour "" ; coord "292,293" ; type "GPI-Anchor" ; cleavage "0.36720002" ; note "GPI-Anchor Signal predicted for SPBC530.10c by DGPI v2.04 with cleavage site probability 0.36720002 near 292" ;
chromosome2 GeneDB misc_feature 1023805 1023810 . + . misc_feature SPBC146.12 ; algorithm "DGPI v2.04" ; colour "" ; coord "451,452" ; type "GPI-Anchor" ; cleavage "1.5480001" ; note "GPI-Anchor Signal predicted for SPBC146.12 by DGPI v2.04 with cleavage site probability 1.5480001 near 451" ;
chromosome2 GeneDB misc_feature 1131245 1131250 . - . misc_feature SPBC1709.16c ; algorithm "DGPI v2.04" ; colour "" ; coord "263,264" ; type "GPI-Anchor" ; cleavage "2.1199" ; note "GPI-Anchor Signal predicted for SPBC1709.16c by DGPI v2.04 with cleavage site probability 2.1199 near 262" ;
chromosome2 GeneDB misc_feature 1534068 1534073 . + . misc_feature SPBC83.13 ; algorithm "DGPI v2.04" ; colour "" ; coord "256,257" ; type "GPI-Anchor" ; cleavage "0.1292" ; note "GPI-Anchor Signal predicted for SPBC83.13 by DGPI v2.04 with cleavage site probability 0.1292 near 256" ;
chromosome2 GeneDB misc_feature 1664852 1664857 . + . misc_feature SPBC21B10.04c ; algorithm "DGPI v2.04" ; colour "" ; coord "91,92" ; type "GPI-Anchor" ; cleavage "0.59159994" ; note "GPI-Anchor Signal predicted for SPBC21B10.04c by DGPI v2.04 with cleavage site probability 0.59159994 near 91" ;
chromosome2 GeneDB misc_feature 1971775 1971780 . + . misc_feature SPBC1E8.05 ; algorithm "DGPI v2.04" ; colour "" ; coord "288,289" ; type "GPI-Anchor" ; cleavage "1.5480001" ; note "GPI-Anchor Signal predicted for SPBC1E8.05 by DGPI v2.04 with cleavage site probability 1.5480001 near 290" ;
chromosome2 GeneDB misc_feature 2099608 2099613 . + . misc_feature SPBC18E5.13 ; algorithm "DGPI v2.04" ; colour "" ; coord "218,219" ; type "GPI-Anchor" ; cleavage "0.30960003" ; note "GPI-Anchor Signal predicted for SPBC18E5.13 by DGPI v2.04 with cleavage site probability 0.30960003 near 216" ;
chromosome2 GeneDB misc_feature 2668303 2668308 . - . misc_feature SPBC3E7.06c ; algorithm "DGPI v2.04" ; colour "" ; coord "545,546" ; type "GPI-Anchor" ; cleavage "0.14039999" ; note "GPI-Anchor Signal predicted for SPBC3E7.06c by DGPI v2.04 with cleavage site probability 0.14039999 near 545" ;
chromosome2 GeneDB misc_feature 2758809 2758814 . - . misc_feature SPBC336.10c ; algorithm "DGPI v2.04" ; colour "" ; coord "141,142" ; type "GPI-Anchor" ; cleavage "0.77400005" ; note "GPI-Anchor Signal predicted for SPBC336.10c by DGPI v2.04 with cleavage site probability 0.77400005 near 141" ;
chromosome2 GeneDB misc_feature 2849658 2849663 . - . misc_feature SPBP19A11.02c ; algorithm "DGPI v2.04" ; colour "" ; coord "218,219" ; type "GPI-Anchor" ; cleavage "3.7410002" ; note "GPI-Anchor Signal predicted for SPBP19A11.02c by DGPI v2.04 with cleavage site probability 3.7410002 near 218" ;
chromosome2 GeneDB misc_feature 3273716 3273721 . + . misc_feature SPBC25H2.06c ; algorithm "DGPI v2.04" ; colour "" ; coord "263,264" ; type "GPI-Anchor" ; cleavage "0.13679999" ; note "GPI-Anchor Signal predicted for SPBC25H2.06c by DGPI v2.04 with cleavage site probability 0.13679999 near 263" ;
chromosome2 GeneDB misc_feature 4057698 4057703 . + . misc_feature SPBC215.13 ; algorithm "DGPI v2.04" ; colour "" ; coord "511,512" ; type "GPI-Anchor" ; cleavage "0.49879998" ; note "GPI-Anchor Signal predicted for SPBC215.13 by DGPI v2.04 with cleavage site probability 0.49879998 near 511" ;
chromosome2 GeneDB misc_feature 4207528 4207533 . + . misc_feature SPBC342.03 ; algorithm "DGPI v2.04" ; colour "" ; coord "428,429" ; type "GPI-Anchor" ; cleavage "2.4940002" ; note "GPI-Anchor Signal predicted for SPBC342.03 by DGPI v2.04 with cleavage site probability 2.4940002 near 428" ;
chromosome2 GeneDB misc_feature 4272449 4272454 . - . misc_feature SPBC16A3.13 ; algorithm "DGPI v2.04" ; colour "" ; coord "738,739" ; type "GPI-Anchor" ; cleavage "0.20879999" ; note "GPI-Anchor Signal predicted for SPBC16A3.13 by DGPI v2.04 with cleavage site probability 0.20879999 near 738" ;
chromosome2 GeneDB misc_feature 4315190 4315195 . + . misc_feature SPBC543.08 ; algorithm "DGPI v2.04" ; colour "" ; coord "235,236" ; type "GPI-Anchor" ; cleavage "0.24939999" ; note "GPI-Anchor Signal predicted for SPBC543.08 by DGPI v2.04 with cleavage site probability 0.24939999 near 223" ;
chromosome2 GeneDB misc_feature 4448850 4448855 . + . misc_feature SPBP4G3.02 ; algorithm "DGPI v2.04" ; colour "" ; coord "432,433" ; type "GPI-Anchor" ; cleavage "0.2924" ; note "GPI-Anchor Signal predicted for SPBP4G3.02 by DGPI v2.04 with cleavage site probability 0.2924 near 432" ;
chromosome2 GeneDB repeat_region 1 6535 . + . repeat_region unknown_1 ; note "duplicated region in c212" ;
chromosome2 GeneDB LTR 997 1215 . - . LTR unknown_2 ; note "218 (-1) 37 254 Tf2-type LTR" ;
chromosome2 GeneDB LTR 1296 1591 . - . LTR unknown_3 ; note "464 (-1) 56 349 Tf2-type LTR" ;
chromosome2 GeneDB LTR 2756 3054 . - . LTR unknown_4 ; note "176 (-1) 2 299 Tf2-type LTR" ;
chromosome2 GeneDB LTR 4835 5191 . + . LTR unknown_5 ; note "524 (+1) 1 354 Tf1-type LTR" ;
chromosome2 GeneDB 5'-UTR 5386 5450 . + . mRNA SPBC1348.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPBC1348.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 5451 6318 . + . mRNA SPBC1348.01 ; obsolete_name "SPAC1348.01" ; db_xref "SPD:51/51C04" ; systematic_id "SPBC1348.01" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; gene "SPBC1348.01" ; product "S. pombe specific DUF999 protein family 5" ;
chromosome2 GeneDB CDS 5451 5940 . + . mRNA SPBC1348.01 ; colour "12" ;
chromosome2 GeneDB CDS 5999 6318 . + . mRNA SPBC1348.01 ; colour "12" ;
chromosome2 GeneDB misc_feature 5941 5946 . + . misc_feature unknown_6 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 5982 5998 . + . misc_feature unknown_7 ; colour "6" ; note "ctaataatttaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 6319 6410 . + . mRNA SPBC1348.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; systematic_id "SPBC1348.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 7663 7979 . + . mRNA SPBC1348.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1348.02" ; systematic_id "SPBC1348.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 7980 9014 . + . mRNA SPBC1348.02 ; obsolete_name "SPAC1348.02" ; db_xref "SPD:51/51C07" ; systematic_id "SPBC1348.02" ; colour "12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; gene "SPBC1348.02" ; product "S. pombe specific 5Tm protein family" ;
chromosome2 GeneDB CDS 7980 9014 . + . mRNA SPBC1348.02 ; colour "12" ;
chromosome2 GeneDB repeat_region 8062 12662 . + . repeat_region unknown_8 ; note "duplicated region in c977" ;
chromosome2 GeneDB 3'-UTR 9015 9271 . + . mRNA SPBC1348.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1348.02" ; systematic_id "SPBC1348.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 10569 11009 . + . mRNA SPBC1348.03 ; obsolete_name "SPAC1348.03" ; systematic_id "SPBC1348.03" ; controlled_curation "term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; product "S. pombe specific 5Tm protein family" ;
chromosome2 GeneDB CDS 10569 11009 . + . mRNA SPBC1348.03 ; colour "12" ;
chromosome2 GeneDB CDS_parts 12176 12613 . + . mRNA SPBC1348.04 ; obsolete_name "SPAC1348.04" ; db_xref "SPD:51/51B02" ; systematic_id "SPBC1348.04" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC750.03C and SPAC977.03; date=19700101 ||| term=warning, possible horizontal transfer; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100902" ; gene "SPBC1348.04" ; product "methyltransferase (predicted)" ;
chromosome2 GeneDB CDS 12176 12613 . + . mRNA SPBC1348.04 ; colour "10" ;
chromosome2 GeneDB CDS_parts 13572 15029 . + . mRNA SPBC1348.05 ; obsolete_name "SPAC1348.05" ; systematic_id "SPBC1348.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=similar to S. pombe SPAC750.02c and SPAPB1A11.01 and SPBPB2B2.16c and SPCC1529.01; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; gene "SPBC1348.05" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 13572 15029 . + . mRNA SPBC1348.05 ; colour "7" ;
chromosome2 GeneDB repeat_region 14527 29514 . + . repeat_region unknown_9 ; note "duplicated region in c977" ;
chromosome2 GeneDB CDS_parts 15981 16592 . - . mRNA SPBC1348.06c ; obsolete_name "SPAC1348.06c" ; systematic_id "SPBC1348.06c" ; colour "10" ; GO "GO:0034224; cellular response to zinc ion starvation
GO:0071276; cellular response to cadmium ion
GO:0055069; zinc ion homeostasis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YGL258W and YOR387C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1348.06c" ; product "conserved fungal family" ;
chromosome2 GeneDB CDS 15981 16592 . - . mRNA SPBC1348.06c ; colour "10" ;
chromosome2 GeneDB CDS_parts 19641 20383 . + . mRNA SPBC1348.07 ; systematic_id "SPBC1348.07" ; colour "12" ; gene "SPBC1348.07" ; obsolete_name "SPAC1348.07" ; db_xref "SPD:51/51B12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; GO "GO:0009897; external side of plasma membrane" ; product "S. pombe specific DUF999 protein family 6" ;
chromosome2 GeneDB CDS 19641 20058 . + . mRNA SPBC1348.07 ; colour "12" ;
chromosome2 GeneDB CDS 20109 20383 . + . mRNA SPBC1348.07 ; colour "12" ;
chromosome2 GeneDB misc_feature 20059 20064 . + . misc_feature unknown_10 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 20092 20108 . + . misc_feature unknown_11 ; colour "6" ; note "ctaataatttaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_RNA 21025 21701 . + . misc_RNA SPNCRNA.287 ; db_xref "PMID:18488015" ; synonym "SPNG1093" ; systematic_id "SPNCRNA.287" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 22279 23529 . - . mRNA SPBC1348.08c ; systematic_id "SPBC1348.08c" ; colour "10" ; gene "SPBC1348.08c" ; obsolete_name "SPAC1348.08c" ; db_xref "SPD:51/51D02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=GLEYA domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; evidence=ISS; qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; product "cell surface glycoprotein (predicted)" ;
chromosome2 GeneDB CDS 22279 23529 . - . mRNA SPBC1348.08c ; colour "10" ;
chromosome2 GeneDB CDS_parts 24916 25626 . + . mRNA SPBC1348.09 ; obsolete_name "SPAC1348.09" ; systematic_id "SPBC1348.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPBC1348.09" ; product "short chain dehydrogenase (predicted)" ;
chromosome2 GeneDB CDS 24916 25626 . + . mRNA SPBC1348.09 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 26155 26286 . - . mRNA SPBC1348.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1348.10c" ; systematic_id "SPBC1348.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 26287 28372 . - . mRNA SPBC1348.10c ; obsolete_name "SPAC1348.10c" ; systematic_id "SPBC1348.10c" ; colour "7" ; GO "GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region
GO:0004620; phospholipase activity
GO:0046475; glycerophospholipid catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1348.10c" ; product "phospholipase (predicted)" ;
chromosome2 GeneDB CDS 26287 26355 . - . mRNA SPBC1348.10c ; colour "7" ;
chromosome2 GeneDB CDS 26420 28372 . - . mRNA SPBC1348.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 26356 26371 . - . misc_feature unknown_12 ; colour "6" ; note "ctaacttttgttctag, splice branch and acceptor" ;
chromosome2 GeneDB intron 26356 26419 . - . intron SPBC1348.10c ; systematic_id "SPBC1348.10c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 26414 26419 . - . misc_feature unknown_13 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 28371 28576 . - . mRNA SPBC1348.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1348.10c" ; systematic_id "SPBC1348.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 28624 28796 . + . misc_RNA SPNCRNA.11 ; Alias "prl11" ; db_xref "PMID:12597277 ||| EMBL:AB084823" ; systematic_id "SPNCRNA.11" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl11" ; gene "prl11" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB CDS_parts 33231 34780 . + . mRNA SPBC1348.11 ; systematic_id "SPBC1348.11" ; synonym "SPAC1348.11" ; pseudo "_no_value" ; colour "13" ; gene "SPBC1348.11" ; product "membrane transporter, pseudogene" ; note "frameshift and in frame stop codon, forced sequence to give valid translation" ;
chromosome2 GeneDB CDS 33231 33602 . + . mRNA SPBC1348.11 ; colour "13" ;
chromosome2 GeneDB CDS 33608 34291 . + . mRNA SPBC1348.11 ; colour "13" ;
chromosome2 GeneDB CDS 34295 34780 . + . mRNA SPBC1348.11 ; colour "13" ;
chromosome2 GeneDB CDS_parts 35112 36589 . + . mRNA SPBC1348.12 ; synonym "SPAC1348.12" ; systematic_id "SPBC1348.12" ; controlled_curation "term=zinc finger protein; date=19700101 ||| term=warning, previously annotated as pseudogene; cv=warning; date=20091107 ||| term=warning, gene structure updated; cv=warning; date=20091108 ||| term=warning, gene structure may be incorrect; cv=warning; date=20091108" ; colour "10" ; gene "SPBC1348.12" ; product "zinc finger protein" ; note "forced splicing to give coding product, non canonical splice signals, may be multiply frameshifted" ;
chromosome2 GeneDB CDS 35112 35171 . + . mRNA SPBC1348.12 ; colour "10" ;
chromosome2 GeneDB CDS 35211 35612 . + . mRNA SPBC1348.12 ; colour "10" ;
chromosome2 GeneDB CDS 35748 35883 . + . mRNA SPBC1348.12 ; colour "10" ;
chromosome2 GeneDB CDS 35928 36125 . + . mRNA SPBC1348.12 ; colour "10" ;
chromosome2 GeneDB CDS 36234 36589 . + . mRNA SPBC1348.12 ; colour "10" ;
chromosome2 GeneDB CDS_parts 36892 37188 . + . mRNA SPBC1348.13 ; systematic_id "SPBC1348.13" ; synonym "SPAC1348.13" ; colour "10" ; controlled_curation "term=warning, previously annotated as pseudogene; cv=warning; date=20091107 ||| term=warning, possible pseudogene, appears to be mitochondrial genome fragment; cv=warning; date=20091108" ; GO "GO:0008150; biological_process
GO:0003674; molecular_function
GO:0005575; cellular_component" ; gene "SPBC1348.13" ; product "similar to fragment of cox1 intron protein" ;
chromosome2 GeneDB CDS 36892 37188 . + . mRNA SPBC1348.13 ; colour "10" ;
chromosome2 GeneDB misc_feature 38440 39186 . + . misc_feature unknown_14 ; note "nominal overlap with SPAC1348 S. pombe chromosome 1" ;
chromosome2 GeneDB CDS_parts 38587 40143 . - . mRNA SPBC1348.14c ; systematic_id "SPBC1348.14c" ; colour "7" ; gene "ght7 ||| SPBPB8B6.01c ||| SPBC1348.14c" ; Alias "ght7" ; obsolete_name "SPAC1348.14c ||| SPAPB8B6.01c ||| SPAP8B6.01c" ; db_xref "SPD:50/50H01" ; synonym "SPBPB8B6.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005886; plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transporter" ; primary_name "ght7" ; product "hexose transporter Ght7 (predicted)" ;
chromosome2 GeneDB CDS 38587 40143 . - . mRNA SPBC1348.14c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 40144 40277 . - . mRNA SPBC1348.14c ; ID "SPBC1348.14c" ; systematic_id "SPBC1348.14c" ; note "mRNA from AF017180" ;
chromosome2 GeneDB CDS_parts 44810 46831 . - . mRNA SPBPB8B6.02c ; systematic_id "SPBPB8B6.02c" ; colour "7" ; gene "SPBPB8B6.02c" ; obsolete_name "SPAP8B6.02c" ; db_xref "SPD:51/51A04" ; controlled_curation "term=orthologous to S. cerevisiae YHL016C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0015204; urea transporter activity
GO:0071918; urea transmembrane transport
GO:0005886; plasma membrane" ; product "urea transporter (predicted)" ;
chromosome2 GeneDB CDS 44810 46831 . - . mRNA SPBPB8B6.02c ; colour "7" ;
chromosome2 GeneDB CDS_parts 47428 49071 . + . mRNA SPBPB8B6.03 ; systematic_id "SPBPB8B6.03" ; colour "10" ; gene "SPBPB8B6.03" ; obsolete_name "SPAP8B6.03" ; db_xref "SPD:50/50H11" ; GO "GO:0006631; fatty acid metabolic process" ; controlled_curation "term=orthologous to S. cerevisiae YDR242W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; product "acetamidase (predicted)" ; EC_number "3.5.1.4" ;
chromosome2 GeneDB CDS 47428 49071 . + . mRNA SPBPB8B6.03 ; colour "10" ;
chromosome2 GeneDB CDS_parts 49143 51181 . - . mRNA SPBPB8B6.04c ; systematic_id "SPBPB8B6.04c" ; colour "2" ; gene "grt1 ||| SPBPB8B6.04c" ; Alias "grt1" ; obsolete_name "SPAP8B6.04c" ; db_xref "SPD:51/51A05" ; synonym "SPAPB8B6.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0008270; zinc ion binding
GO:0000091; mitotic anaphase A
GO:0006355; regulation of transcription, DNA- dependent" ; primary_name "grt1" ; product "transcription factor Grt1 (predicted)" ;
chromosome2 GeneDB CDS 49143 50910 . - . mRNA SPBPB8B6.04c ; colour "2" ;
chromosome2 GeneDB CDS 50953 51062 . - . mRNA SPBPB8B6.04c ; colour "2" ;
chromosome2 GeneDB CDS 51113 51181 . - . mRNA SPBPB8B6.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 50911 50923 . - . misc_feature unknown_15 ; colour "6" ; note "ttaatataaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 50947 50952 . - . misc_feature unknown_16 ; colour "6" ; note "gtatac, splice donor sequence" ;
chromosome2 GeneDB misc_feature 51063 51074 . - . misc_feature unknown_17 ; colour "6" ; note "ttaacaattaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 51107 51112 . - . misc_feature unknown_18 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB repeat_region 54135 56795 . - . repeat_region unknown_19 ; note "duplicated region in c977" ;
chromosome2 GeneDB 3'-UTR 54322 54496 . - . mRNA SPBPB8B6.05c ; ID "SPBPB8B6.05c" ; systematic_id "SPBPB8B6.05c" ; note "mRNA from AU009839" ;
chromosome2 GeneDB CDS_parts 54497 55567 . - . mRNA SPBPB8B6.05c ; systematic_id "SPBPB8B6.05c" ; colour "7" ; gene "SPBPB8B6.05c" ; obsolete_name "SPAP8B6.05c" ; db_xref "SPD:51/51C09" ; GO "GO:0006530; asparagine catabolic process
GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR155C and YLR157C and YLR158C and YLR160C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; product "L-asparaginase (predicted)" ; EC_number "3.5.1.1" ;
chromosome2 GeneDB CDS 54497 55567 . - . mRNA SPBPB8B6.05c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 55566 55582 . - . mRNA SPBPB8B6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB8B6.05c" ; systematic_id "SPBPB8B6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 55751 55849 . - . mRNA SPBPB8B6.06c ; ID "SPBPB8B6.06c" ; systematic_id "SPBPB8B6.06c" ; note "mRNA from AU013227" ;
chromosome2 GeneDB CDS_parts 55850 56785 . - . mRNA SPBPB8B6.06c ; db_xref "SPD:51/51C06" ; obsolete_name "SPAP8B6.06c" ; systematic_id "SPBPB8B6.06c" ; controlled_curation "term=orthologous to S. cerevisiae YOR390W and YPL279C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBPB8B6.06c" ; product "CRCB domain protein" ;
chromosome2 GeneDB CDS 55850 56785 . - . mRNA SPBPB8B6.06c ; colour "10" ;
chromosome2 GeneDB repeat_region 56925 57077 . - . repeat_region unknown_20 ; note "duplicated region in c977" ;
chromosome2 GeneDB LTR 57151 57483 . - . LTR unknown_21 ; note "261 (+1) 34 358 Tf1-type LTR" ;
chromosome2 GeneDB LTR 57604 57821 . - . LTR unknown_22 ; note "179 (+1) 1 215 Tf1-type LTR" ;
chromosome2 GeneDB CDS_parts 58324 59646 . - . mRNA SPBPB21E7.01c ; systematic_id "SPBPB21E7.01c" ; colour "7" ; obsolete_name "SPAP8B6.07c ||| SPAPB21E7.01c" ; Alias "eno102" ; synonym "eno1 ||| SPBPB8B6.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YGR254W and YHR174W and YOR393W and YPL281C and YMR323W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006096; glycolysis
GO:0004634; phosphopyruvate hydratase activity" ; primary_name "eno102" ; product "enolase (predicted)" ;
chromosome2 GeneDB CDS 58324 59646 . - . mRNA SPBPB21E7.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 58340 58439 . + . misc_feature unknown_23 ; note "nominal overlap with cosmid pB8B6" ;
chromosome2 GeneDB CDS_parts 60553 61379 . - . mRNA SPBPB21E7.02c ; synonym "SPAPB21E7.02c" ; systematic_id "SPBPB21E7.02c" ; controlled_curation "term=warning, previously annotated as pseudogene; cv=warning; date=20091108 ||| term=warning, gene structure updated; cv=warning; date=20091108 ||| term=warning, gene structure may be incorrect; cv=warning; date=20091108 ||| term=species distribution, orthologs cannot be distinguished; date=20091108 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; product "phosphoglycerate mutase family" ;
chromosome2 GeneDB CDS 60553 61094 . - . mRNA SPBPB21E7.02c ; colour "10" ;
chromosome2 GeneDB CDS 61286 61379 . - . mRNA SPBPB21E7.02c ; colour "10" ;
chromosome2 GeneDB misc_RNA 61601 62885 . - . misc_RNA SPNCRNA.288 ; db_xref "PMID:18488015" ; synonym "SPNG1099 ||| SPNGAF23" ; systematic_id "SPNCRNA.288" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "transcribed during stress" ;
chromosome2 GeneDB LTR 63206 63538 . + . LTR unknown_24 ; note "783 (+1) 21 268 Tf1-type LTR" ;
chromosome2 GeneDB misc_RNA 63695 64021 . + . misc_RNA SPNCRNA.289 ; db_xref "PMID:18488015" ; synonym "SPNG1100" ; systematic_id "SPNCRNA.289" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 64669 65514 . - . mRNA SPBPB21E7.04c ; obsolete_name "SPAPB21E7.04c" ; db_xref "SPD:52/52A05" ; systematic_id "SPBPB21E7.04c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human COMT ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBPB21E7.04c" ; product "human COMT ortholog 2" ;
chromosome2 GeneDB CDS 64669 65514 . - . mRNA SPBPB21E7.04c ; colour "10" ;
chromosome2 GeneDB CDS_parts 66842 67225 . + . mRNA SPBPB21E7.05 ; db_xref "SPD:51/51H06" ; obsolete_name "SPAPB21E7.05" ; systematic_id "SPBPB21E7.05" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBPB21E7.05" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 66842 67225 . + . mRNA SPBPB21E7.05 ; colour "8" ;
chromosome2 GeneDB CDS_parts 68355 68852 . + . mRNA SPBPB21E7.06 ; systematic_id "SPBPB21E7.06" ; pseudo "_no_value" ; synonym "SPAPB21E7.06" ; colour "13" ; gene "SPBPB21E7.06" ; product "pseudogene" ; note "fragmented copy of S. pombe SPBC2A9.02" ;
chromosome2 GeneDB CDS 68355 68852 . + . mRNA SPBPB21E7.06 ; colour "13" ;
chromosome2 GeneDB 5'-UTR 70156 70203 . + . mRNA SPBPB21E7.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB21E7.07" ; systematic_id "SPBPB21E7.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 70204 71094 . + . mRNA SPBPB21E7.07 ; systematic_id "SPBPB21E7.07" ; colour "2" ; gene "aes1 ||| SPBPB21E7.07" ; Alias "aes1" ; db_xref "SPD:52/52A08" ; synonym "SPAPB21E7.07" ; GO "GO:0010629; negative regulation of gene expression" ; controlled_curation "term=orthologous to S. cerevisiae YHR029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "aes1" ; product "enhancer of RNA-mediated gene silencing" ;
chromosome2 GeneDB CDS 70204 71094 . + . mRNA SPBPB21E7.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 71095 71310 . + . mRNA SPBPB21E7.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB21E7.07" ; systematic_id "SPBPB21E7.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 72081 72344 . + . mRNA SPBPB21E7.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB21E7.08" ; systematic_id "SPBPB21E7.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 72123 72320 . + . misc_feature unknown_25 ; note "possible rearrangement here. Possible N terminal Adenine deaminase fragment" ;
chromosome2 GeneDB CDS_parts 72345 73390 . + . mRNA SPBPB21E7.08 ; systematic_id "SPBPB21E7.08" ; colour "13" ; gene "SPBPB21E7.08" ; note "2 frameshifts" ; synonym "SPAPB21E7.08" ; pseudo "_no_value" ; controlled_curation "term=orthologous to S. cerevisiae YJL213W; date=19700101" ; product "pseudogene" ;
chromosome2 GeneDB CDS 72345 72612 . + . mRNA SPBPB21E7.08 ; colour "13" ;
chromosome2 GeneDB CDS 72615 73117 . + . mRNA SPBPB21E7.08 ; colour "13" ;
chromosome2 GeneDB CDS 73136 73390 . + . mRNA SPBPB21E7.08 ; colour "13" ;
chromosome2 GeneDB CDS_parts 76318 77400 . + . mRNA SPBPB21E7.09 ; systematic_id "SPBPB21E7.09" ; colour "7" ; gene "SPBPB21E7.09" ; db_xref "SPD:52/52A11" ; synonym "SPAPB21E7.09" ; GO "GO:0006530; asparagine catabolic process
GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR155C and YLR157C and YLR158C and YLR160C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; product "L-asparaginase (predicted)" ; EC_number "3.5.1.1" ;
chromosome2 GeneDB CDS 76318 77400 . + . mRNA SPBPB21E7.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 80094 80201 . - . misc_feature unknown_26 ; note "partial ORF, previously annotated, SPBPB21E7.10, obsolete_name SPBPB21E7.10; partial ORF of 35 aa bordering sequence gap, no reason to believe this is coding" ;
chromosome2 GeneDB 5'-UTR 81025 81294 . + . mRNA SPBPB10D8.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB10D8.01" ; systematic_id "SPBPB10D8.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 81295 82953 . + . mRNA SPBPB10D8.01 ; db_xref "SPD:50/50H12" ; systematic_id "SPBPB10D8.01" ; colour "7" ; GO "GO:0033229; cysteine transmembrane transporter activity
GO:0042883; cysteine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLL055W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBPB10D8.01" ; product "cysteine transporter (predicted)" ;
chromosome2 GeneDB CDS 81295 82953 . + . mRNA SPBPB10D8.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 82954 83118 . + . mRNA SPBPB10D8.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB10D8.01" ; systematic_id "SPBPB10D8.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 83337 83766 . - . mRNA SPBPB10D8.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB10D8.02c" ; systematic_id "SPBPB10D8.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 83767 85431 . - . mRNA SPBPB10D8.02c ; db_xref "SPD:51/51A01" ; systematic_id "SPBPB10D8.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006790; sulfur metabolism
GO:0004065; arylsulfatase activity" ; gene "SPBPB10D8.02c" ; product "arylsulfatase (predicted)" ; EC_number "3.1.6.1" ;
chromosome2 GeneDB CDS 83767 85431 . - . mRNA SPBPB10D8.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 85430 85483 . - . mRNA SPBPB10D8.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB10D8.02c" ; systematic_id "SPBPB10D8.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 87727 89029 . + . mRNA SPBPB10D8.03 ; systematic_id "SPBPB10D8.03" ; pseudo "_no_value" ; colour "13" ; gene "SPBPB10D8.03" ; product "pseudogene transporter" ;
chromosome2 GeneDB CDS 87727 88101 . + . mRNA SPBPB10D8.03 ; colour "13" ;
chromosome2 GeneDB CDS 88103 89029 . + . mRNA SPBPB10D8.03 ; colour "13" ;
chromosome2 GeneDB CDS_parts 91724 92863 . - . mRNA SPBPB10D8.04c ; db_xref "SPD:50/50D01" ; systematic_id "SPBPB10D8.04c" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0055085; transmembrane transport
GO:0022857; transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPL092W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBPB10D8.04c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 91724 92863 . - . mRNA SPBPB10D8.04c ; colour "7" ;
chromosome2 GeneDB LTR 93517 93860 . - . LTR unknown_27 ; note "854 (-1) 1 349 Tf2-type LTR" ;
chromosome2 GeneDB CDS_parts 94483 95622 . - . mRNA SPBPB10D8.05c ; systematic_id "SPBPB10D8.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPL092W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport
GO:0005886; integral to plasma membrane" ; gene "SPBPB10D8.05c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 94483 95622 . - . mRNA SPBPB10D8.05c ; colour "7" ;
chromosome2 GeneDB LTR 96276 96619 . - . LTR unknown_28 ; note "854 (-1) 1 349 Tf2-type LTR" ;
chromosome2 GeneDB CDS_parts 97242 98381 . - . mRNA SPBPB10D8.06c ; systematic_id "SPBPB10D8.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPL092W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport
GO:0005886; integral to plasma membrane" ; gene "SPBPB10D8.06c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 97242 98381 . - . mRNA SPBPB10D8.06c ; colour "7" ;
chromosome2 GeneDB LTR 99035 99378 . - . LTR unknown_29 ; note "854 (-1) 1 349 Tf2-type LTR" ;
chromosome2 GeneDB CDS_parts 100001 101140 . - . mRNA SPBPB10D8.07c ; systematic_id "SPBPB10D8.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPL092W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport
GO:0005886; integral to plasma membrane" ; gene "SPBPB10D8.07c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 100001 101140 . - . mRNA SPBPB10D8.07c ; colour "7" ;
chromosome2 GeneDB LTR 101794 102137 . - . LTR unknown_30 ; note "854 (-1) 1 349 Tf2-type LTR" ;
chromosome2 GeneDB misc_RNA 102509 102673 . + . misc_RNA SPNCRNA.290 ; db_xref "PMID:18488015" ; synonym "SPNG1114" ; systematic_id "SPNCRNA.290" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 103208 104381 . + . misc_RNA SPNCRNA.291 ; db_xref "PMID:18488015" ; synonym "SPNG1116" ; systematic_id "SPNCRNA.291" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 104676 105127 . + . mRNA SPBC359.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC359.01" ; systematic_id "SPBC359.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 105128 106873 . + . mRNA SPBC359.01 ; systematic_id "SPBC359.01" ; colour "7" ; gene "SPBPB10D8.08 ||| SPBC359.01" ; Alias "SPBPB10D8.08" ; db_xref "SPD:51/51A03" ; synonym "SPBPB10D8.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; primary_name "SPBPB10D8.08" ; product "amino acid permease (predicted)" ;
chromosome2 GeneDB CDS 105128 106873 . + . mRNA SPBC359.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 106874 107042 . + . mRNA SPBC359.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC359.01" ; systematic_id "SPBC359.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 107759 108871 . + . mRNA SPBC359.02 ; systematic_id "SPBC359.02" ; colour "7" ; gene "alr2 ||| SPBC359.02" ; Alias "alr2" ; obsolete_name "alr1" ; db_xref "SPD:17/17E05" ; GO "GO:0008784; alanine racemase activity
GO:0006522; alanine metabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible horizontal transfer; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100902" ; primary_name "alr2" ; product "alanine racemase Alr2 (predicted)" ;
chromosome2 GeneDB CDS 107759 108871 . + . mRNA SPBC359.02 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 111221 111308 . - . mRNA SPBC359.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC359.03c" ; systematic_id "SPBC359.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 111309 113048 . - . mRNA SPBC359.03c ; systematic_id "SPBC359.03c" ; colour "7" ; gene "SPBC359.03c" ; Alias "aat1" ; db_xref "SPD:45/45F12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=name description, Amino Acid Transporter; db_xref=PMID:20388730; date=20100622 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; GO "GO:0005886; plasma membrane
GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport
GO:0005739; Golgi apparatus
GO:0005886; plasma membrane" ; primary_name "aat1" ; product "amino acid transporter Aat1 (predicted)" ;
chromosome2 GeneDB CDS 111309 113048 . - . mRNA SPBC359.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 113047 113200 . - . mRNA SPBC359.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC359.03c" ; systematic_id "SPBC359.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 114092 114583 . + . misc_RNA SPNCRNA.292 ; db_xref "PMID:18488015" ; synonym "SPNG1122" ; systematic_id "SPNCRNA.292" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 118252 119328 . - . mRNA SPBC359.04c ; db_xref "SPD:16/16F07" ; systematic_id "SPBC359.04c" ; colour "12" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAC186.01 and SPBC947.04; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=DIPSY domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; evidence=ISS: qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; gene "SPBC359.04c" ; product "cell surface glycoprotein (predicted), DIPSY family" ;
chromosome2 GeneDB CDS 118252 119328 . - . mRNA SPBC359.04c ; colour "12" ;
chromosome2 GeneDB 5'-UTR 119327 119803 . - . mRNA SPBC359.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC359.04c" ; systematic_id "SPBC359.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 120652 121497 . + . misc_RNA SPNCRNA.293 ; db_xref "PMID:18488015" ; synonym "SPNG1125" ; systematic_id "SPNCRNA.293" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 122605 122746 . + . mRNA SPBC359.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC359.05" ; systematic_id "SPBC359.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 122747 127144 . + . mRNA SPBC359.05 ; systematic_id "SPBC359.05" ; colour "2" ; gene "abc3 ||| SPBC359.05" ; Alias "abc3" ; db_xref "SPD:39/39E06" ; GO "GO:0005215; transporter activity
GO:0055085; transmembrane transport
GO:0000329; vacuolar membrane
GO:0042626; ATPase activity, coupled to transmembrane movement of substances" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=MDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YLL048C and YDR135C and YLL015W and YHL035C and YGR281W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "abc3" ; product "ABC transporter Abc3, unknown specificity" ;
chromosome2 GeneDB CDS 122747 127144 . + . mRNA SPBC359.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 127145 127226 . + . mRNA SPBC359.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC359.05" ; systematic_id "SPBC359.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 127311 127803 . + . misc_RNA SPNCRNA.294 ; db_xref "PMID:18488015" ; synonym "SPNG1126" ; systematic_id "SPNCRNA.294" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 128825 129598 . + . mRNA SPBC359.06 ; systematic_id "SPBC359.06" ; colour "10" ; gene "SPBC359.06 ||| mug14" ; Alias "mug14" ; db_xref "SPD:09/09E12" ; GO "GO:0016829; lyase activity
GO:0015629; actin cytoskeleton" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug14" ; product "adducin" ;
chromosome2 GeneDB CDS 128825 129598 . + . mRNA SPBC359.06 ; colour "10" ;
chromosome2 GeneDB misc_feature 131078 131577 . + . misc_feature unknown_31 ; note "nominal overlap between cosmid SPBC1683 and cosmid SPBC359" ;
chromosome2 GeneDB 5'-UTR 132353 134302 . + . mRNA SPBC1683.01 ; ID "SPBC1683.01" ; db_xref "PMID:18488015" ; systematic_id "SPBC1683.01" ; note "From Solexa transcript SPNG1132-34" ;
chromosome2 GeneDB CDS_parts 134303 136024 . + . mRNA SPBC1683.01 ; db_xref "SPD:45/45F07" ; systematic_id "SPBC1683.01" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0005315; inorganic phosphate transporter activity
GO:0035435; phosphate transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML123C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC1683.01" ; product "inorganic phosphate transporter (predicted)" ;
chromosome2 GeneDB CDS 134303 136024 . + . mRNA SPBC1683.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 136025 136275 . + . mRNA SPBC1683.01 ; ID "SPBC1683.01" ; systematic_id "SPBC1683.01" ; note "mRNA from AU011735" ;
chromosome2 GeneDB LTR 136385 136555 . - . LTR unknown_32 ; note "partial degraded TF1-type LTR" ;
chromosome2 GeneDB CDS_parts 137044 138063 . + . mRNA SPBC1683.02 ; db_xref "SPD:15/15C03" ; systematic_id "SPBC1683.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; db_xref=PMID:14643670; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1683.02" ; product "adenine/adenosine deaminase family (predicted)" ; EC_number "3.5.4.2" ;
chromosome2 GeneDB CDS 137044 138063 . + . mRNA SPBC1683.02 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 138298 138524 . - . mRNA SPBC1683.03c ; ID "SPBC1683.03c" ; systematic_id "SPBC1683.03c" ; note "mRNA from AU011802" ;
chromosome2 GeneDB CDS_parts 138525 140084 . - . mRNA SPBC1683.03c ; db_xref "SPD:45/45A12" ; systematic_id "SPBC1683.03c" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR378w; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1683.03c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 138525 140084 . - . mRNA SPBC1683.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 140083 140263 . - . mRNA SPBC1683.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.03c" ; systematic_id "SPBC1683.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 140474 141087 . + . misc_RNA SPNCRNA.296 ; db_xref "PMID:18488015" ; synonym "SPNG1135" ; systematic_id "SPNCRNA.296" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 141435 141927 . + . misc_RNA SPNCRNA.297 ; db_xref "PMID:18488015" ; synonym "SPNG1136" ; systematic_id "SPNCRNA.297" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 142407 142411 . + . mRNA SPBC1683.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.04" ; systematic_id "SPBC1683.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 142412 144910 . + . mRNA SPBC1683.04 ; db_xref "SPD:29/29A09" ; systematic_id "SPBC1683.04" ; colour "7" ; GO "GO:0044275; cellular carbohydrate catabolism
GO:0044248; cellular catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPBC1683.04" ; product "glycosyl hydrolase family 3 (predicted)" ;
chromosome2 GeneDB CDS 142412 144910 . + . mRNA SPBC1683.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 144911 145156 . + . mRNA SPBC1683.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.04" ; systematic_id "SPBC1683.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 148071 148749 . + . mRNA SPBC1683.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.05" ; systematic_id "SPBC1683.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 148750 150429 . + . mRNA SPBC1683.05 ; db_xref "SPD:35/35B06" ; systematic_id "SPBC1683.05" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR192C and YLR237W and YOR071C; date=19700101 ||| term=complementation, does not functionally complement S. cerevisiae thi7; attribution=J. Stolz; date=20100127 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBC1683.05" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 148750 150429 . + . mRNA SPBC1683.05 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 150430 150437 . + . mRNA SPBC1683.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.05" ; systematic_id "SPBC1683.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 151814 152746 . - . mRNA SPBC1683.06c ; db_xref "SPD:13/13A09" ; systematic_id "SPBC1683.06c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0045437; uridine nucleosidase activity
GO:0008655; pyrimidine salvage
GO:0070635; nicotinamide riboside hydrolase activity
GO:0070636; nicotinic acid riboside hydrolase activity
GO:0050263; ribosylpyrimidine nucleosidase activity
GO:0034356; NAD biosynthesis via nicotinamide riboside salvage pathway
GO:0019358; nicotinate nucleoside salvage
GO:0046135; pyrimidine nucleoside catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR400W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC1683.06c" ; product "uridine ribohydrolase (predicted)" ;
chromosome2 GeneDB CDS 151814 152746 . - . mRNA SPBC1683.06c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 153461 153561 . + . mRNA SPBC1683.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.07" ; systematic_id "SPBC1683.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 153562 155301 . + . mRNA SPBC1683.07 ; systematic_id "SPBC1683.07" ; colour "2" ; gene "mal1 ||| SPBC1683.07" ; Alias "mal1" ; db_xref "SPD:35/35H07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL172C and YJL221C and YOL157C and YJL216C and YGR287C and YBR299W and YGR292W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0009986; cell surface
GO:0032450; maltase activity
GO:0044247; cellular polysaccharide catabolism
GO:0000025; maltose catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "mal1" ; product "maltase alpha-glucosidase Mal1" ; EC_number "3.2.1.20" ;
chromosome2 GeneDB CDS 153562 155301 . + . mRNA SPBC1683.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 155302 155550 . + . mRNA SPBC1683.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.07" ; systematic_id "SPBC1683.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 156254 157003 . + . misc_RNA SPNCRNA.298 ; db_xref "PMID:18488015" ; synonym "SPNG1143" ; systematic_id "SPNCRNA.298" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 157555 159228 . + . mRNA SPBC1683.08 ; systematic_id "SPBC1683.08" ; colour "2" ; gene "ght4 ||| SPBC1683.08" ; Alias "ght4" ; db_xref "SPD:35/35A06" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "ght4" ; product "hexose transporter Ght4" ;
chromosome2 GeneDB CDS 157555 159228 . + . mRNA SPBC1683.08 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 159229 159512 . + . mRNA SPBC1683.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.08" ; systematic_id "SPBC1683.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 160446 160460 . - . mRNA SPBC1683.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.09c" ; systematic_id "SPBC1683.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 160461 162155 . - . mRNA SPBC1683.09c ; systematic_id "SPBC1683.09c" ; colour "2" ; gene "frp1 ||| SPBC1683.09c" ; Alias "frp1" ; db_xref "SPD:35/35C11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR214W and YKL220C and YOR381W and YNR060W and YGL160W and YLR047C and YOR384W and YLL051C and YOL152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000293; ferric-chelate reductase activity
GO:0005886; plasma membrane
GO:0015677; copper ion import
GO:0033215; iron assimilation by reduction and transport
GO:0005506; iron ion binding
GO:0050660; FAD binding
GO:0016021; integral to membrane
GO:0034755; iron ion transmembrane transport" ; primary_name "frp1" ; product "ferric-chelate reductase Frp1" ; EC_number "1.16.1.7" ;
chromosome2 GeneDB CDS 160461 162155 . - . mRNA SPBC1683.09c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 162154 162372 . - . mRNA SPBC1683.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.09c" ; systematic_id "SPBC1683.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 163689 163891 . + . misc_RNA SPNCRNA.100 ; systematic_id "SPNCRNA.100" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.100" ; product "non-coding RNA (predicted)" ; note "mRNA from spc11163 8 210" ;
chromosome2 GeneDB 3'-UTR 163748 164429 . - . mRNA SPBC1683.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.10c" ; systematic_id "SPBC1683.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 164430 165158 . - . mRNA SPBC1683.10c ; systematic_id "SPBC1683.10c" ; colour "2" ; gene "pcl1 ||| SPBC1683.10c" ; db_xref "SPD:08/08F10" ; Alias "pcl1" ; GO "GO:0005794; Golgi apparatus
GO:0015093; ferrous iron transporter activity
GO:0006874; calcium ion homeostasis
GO:0070627; ferrous iron import
GO:0006879; iron ion homeostasis
GO:0030026; manganese ion homeostasis
GO:0071421; manganese ion transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by CCAAT complex; db_xref=PMID:16963626; cv=gene_ex; date=20070516 ||| term=gene expression, promoter contains CCAAT element; db_xref=PMID:16963626; evidence=IMP; cv=gene_ex; date=20070516 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR220W; date=19700101 ||| term=name description, Pombe Ccc1- Like; cv=name_description; date=20100126 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "pcl1" ; product "ferrous iron transporter Pcl1" ;
chromosome2 GeneDB CDS 164430 165158 . - . mRNA SPBC1683.10c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 165157 165287 . - . mRNA SPBC1683.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.10c" ; systematic_id "SPBC1683.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 166550 166791 . - . mRNA SPBC1683.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.11c" ; systematic_id "SPBC1683.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 166792 168348 . - . mRNA SPBC1683.11c ; systematic_id "SPBC1683.11c" ; colour "7" ; gene "SPBC1683.11c" ; note "assuming this is mitochondrial and involved in amino acid biosynthesis as YPR006C, rather than peroxizomal involved in glyoxylate pathway as YER065C even though YER065C is more closely related, S. pombe does not have any of the other peroxisomal glyoxylate pathway enzymes" ; db_xref "SPD:45/45A10" ; GO "GO:0046421; methylisocitrate lyase activity
GO:0006567; threonine catabolism
GO:0005759; mitochondrial matrix
GO:0019541; propionate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER065C and YPR006C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Bacteria; date=20100824" ; product "isocitrate lyase (predicted)" ; EC_number "4.1.3.1" ;
chromosome2 GeneDB CDS 166792 168348 . - . mRNA SPBC1683.11c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 168347 168643 . - . mRNA SPBC1683.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.11c" ; systematic_id "SPBC1683.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 168671 170119 . + . mRNA SPBC1683.12 ; db_xref "SPD:23/23D01" ; systematic_id "SPBC1683.12" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0035353; nicotinamide mononucleotide transmembrane transport
GO:0015663; nicotinamide mononucleotide transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR260W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1683.12" ; product "nicotinic acid plasma membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 168671 170119 . + . mRNA SPBC1683.12 ; colour "7" ;
chromosome2 GeneDB CDS_parts 170167 172157 . - . mRNA SPBC1683.13c ; systematic_id "SPBC1683.13c" ; colour "2" ; db_xref "SPD:27/27C10" ; Alias "cha4" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding
GO:0005515; protein binding
GO:0006808; regulation of nitrogen utilization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR337W and YLR098C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, growth defect, slow growth with ammonia nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=phenotype, growth defect, normal growth with proline nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504" ; primary_name "cha4" ; product "transcription factor Cha4 (predicted)" ;
chromosome2 GeneDB CDS 170167 171862 . - . mRNA SPBC1683.13c ; colour "2" ;
chromosome2 GeneDB CDS 171909 171991 . - . mRNA SPBC1683.13c ; colour "2" ;
chromosome2 GeneDB CDS 172040 172064 . - . mRNA SPBC1683.13c ; colour "2" ;
chromosome2 GeneDB CDS 172105 172157 . - . mRNA SPBC1683.13c ; colour "2" ;
chromosome2 GeneDB misc_feature 171863 171874 . - . misc_feature unknown_33 ; colour "6" ; note "ctgacatagaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 171903 171908 . - . misc_feature unknown_34 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 171992 172011 . - . misc_feature unknown_35 ; colour "6" ; note "ctaatagaattgttctgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 172034 172039 . - . misc_feature unknown_36 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 172065 172080 . - . misc_feature unknown_37 ; colour "6" ; note "ctaattgaatgcgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 172099 172104 . - . misc_feature unknown_38 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 172156 172271 . - . mRNA SPBC1683.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1683.13c" ; systematic_id "SPBC1683.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 172378 172876 . + . misc_feature unknown_39 ; note "nominal overlap with cosmid SPBC1683 and cosmid SPBC1198" ;
chromosome2 GeneDB 5'-UTR 172655 172990 . + . mRNA SPBC1198.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.01" ; systematic_id "SPBC1198.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 172991 174262 . + . mRNA SPBC1198.01 ; db_xref "SPD:20/20D04" ; systematic_id "SPBC1198.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; colour "7" ; gene "SPBC1198.01" ; product "glutathione-dependent formaldehyde dehydrogenase (predicted)" ;
chromosome2 GeneDB CDS 172991 174262 . + . mRNA SPBC1198.01 ; colour "7" ;
chromosome2 GeneDB CDS_parts 174842 175945 . + . mRNA SPBC1198.02 ; systematic_id "SPBC1198.02" ; colour "2" ; gene "dea2 ||| SPBC1198.02" ; Alias "dea2" ; db_xref "SPD:17/17D01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, immunodeficiency; date=20060825 ||| term=orthologous to S. cerevisiae YNL141W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=catalytic activity, kcat/km 0.46; db_xref=PMID:18673302; date=20100707" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000034; adenine deaminase activity
GO:0006146; adenine catabolism
GO:0043101; purine salvage
GO:0000034; adenine deaminase activity
GO:0043101; purine salvage" ; primary_name "dea2" ; product "adenine deaminase Dea2" ; EC_number "3.5.4.2" ;
chromosome2 GeneDB CDS 174842 175945 . + . mRNA SPBC1198.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 176121 176296 . - . mRNA SPBC1198.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.03c" ; systematic_id "SPBC1198.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 176297 177046 . - . mRNA SPBC1198.03c ; db_xref "SPD:09/09B09" ; systematic_id "SPBC1198.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20091106" ; colour "10" ; gene "SPBC1198.03c" ; product "Golgin subfamily A member" ;
chromosome2 GeneDB CDS 176297 177046 . - . mRNA SPBC1198.03c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 177045 177221 . - . mRNA SPBC1198.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.03c" ; systematic_id "SPBC1198.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 177469 177555 . - . mRNA SPBC1198.04c ; ID "SPBC1198.04c" ; systematic_id "SPBC1198.04c" ; note "mRNA from AU010799" ;
chromosome2 GeneDB CDS_parts 177556 180608 . - . mRNA SPBC1198.04c ; systematic_id "SPBC1198.04c" ; colour "7" ; gene "zas1 ||| SPBC1198.04c" ; Alias "zas1" ; db_xref "SPD:47/47G09" ; GO "GO:0043565; sequence-specific DNA binding
GO:0032569; gene-specific transcription from RNA polymerase II promoter
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YPR022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "zas1" ; product "zinc finger protein, transcription factor Zas1 (predicted)" ;
chromosome2 GeneDB CDS 177556 177608 . - . mRNA SPBC1198.04c ; colour "7" ;
chromosome2 GeneDB CDS 177656 178291 . - . mRNA SPBC1198.04c ; colour "7" ;
chromosome2 GeneDB CDS 178344 178651 . - . mRNA SPBC1198.04c ; colour "7" ;
chromosome2 GeneDB CDS 178690 178811 . - . mRNA SPBC1198.04c ; colour "7" ;
chromosome2 GeneDB CDS 178857 178988 . - . mRNA SPBC1198.04c ; colour "7" ;
chromosome2 GeneDB CDS 179032 179283 . - . mRNA SPBC1198.04c ; colour "7" ;
chromosome2 GeneDB CDS 179322 179387 . - . mRNA SPBC1198.04c ; colour "7" ;
chromosome2 GeneDB CDS 179440 180416 . - . mRNA SPBC1198.04c ; colour "7" ;
chromosome2 GeneDB CDS 180461 180608 . - . mRNA SPBC1198.04c ; colour "7" ;
chromosome2 GeneDB misc_feature 177609 177620 . - . misc_feature unknown_40 ; colour "6" ; note "ctaattaaccag, splice branch and acceptor" ;
chromosome2 GeneDB intron 177609 177655 . - . intron SPBC1198.04c ; systematic_id "SPBC1198.04c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 177650 177655 . - . misc_feature unknown_41 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 178292 178309 . - . misc_feature unknown_42 ; colour "6" ; note "ctaacattccaaacatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 178338 178343 . - . misc_feature unknown_43 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 178652 178665 . - . misc_feature unknown_44 ; colour "6" ; note "cttacaacggttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 178684 178689 . - . misc_feature unknown_45 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 178812 178824 . - . misc_feature unknown_46 ; colour "6" ; note "ctaacttattaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 178851 178856 . - . misc_feature unknown_47 ; colour "6" ; note "gtaatc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 178989 179003 . - . misc_feature unknown_48 ; colour "6" ; note "ctaatcttcctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 179026 179031 . - . misc_feature unknown_49 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 179284 179296 . - . misc_feature unknown_50 ; colour "6" ; note "ctaataaacatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 179316 179321 . - . misc_feature unknown_51 ; colour "6" ; note "gtatag, splice donor sequence" ;
chromosome2 GeneDB misc_feature 179388 179400 . - . misc_feature unknown_52 ; colour "6" ; note "ctgattcatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 179434 179439 . - . misc_feature unknown_53 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 180144 180299 . - . intron SPBC1198.04c ; systematic_id "SPBC1198.04c" ; note "alternatively spliced intron" ;
chromosome2 GeneDB misc_feature 180417 180429 . - . misc_feature unknown_54 ; colour "6" ; note "ttaacttatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 180455 180460 . - . misc_feature unknown_55 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 180607 180632 . - . mRNA SPBC1198.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.04c" ; systematic_id "SPBC1198.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 180994 181064 . - . tRNA SPBTRNAGLY.03 ; systematic_id "SPBTRNAGLY.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033454; GCC codon-amino acid adaptor activity" ; gene "SPBTRNAGLY.03" ; product "tRNA Glycine" ; note "anticodon GCC, Cove score 72.94" ;
chromosome2 GeneDB 5'-UTR 181602 181694 . + . mRNA SPBC1198.05 ; ID "SPBC1198.05" ; systematic_id "SPBC1198.05" ; note "mRNA from AU006603" ;
chromosome2 GeneDB CDS_parts 181695 182303 . + . mRNA SPBC1198.05 ; db_xref "SPD:06/06G11" ; systematic_id "SPBC1198.05" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR454C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004385; guanylate kinase activity
GO:0006183; GTP biosynthesis
GO:0046037; GMP metabolism
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0031506; cell wall glycoprotein biosynthetic process" ; gene "SPBC1198.05" ; product "guanylate kinase (predicted)" ; EC_number "2.7.4.8" ;
chromosome2 GeneDB CDS 181695 182303 . + . mRNA SPBC1198.05 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 182304 182528 . + . mRNA SPBC1198.05 ; ID "SPBC1198.05" ; systematic_id "SPBC1198.05" ; note "mRNA from AU009431" ;
chromosome2 GeneDB 3'-UTR 182665 182824 . - . mRNA SPBC1198.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.06c" ; systematic_id "SPBC1198.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 182825 184225 . - . mRNA SPBC1198.06c ; db_xref "SPD:21/21F07" ; systematic_id "SPBC1198.06c" ; colour "7" ; GO "GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0031362; anchored to external side of plasma membrane
GO:0051692; cellular oligosaccharide catabolism
GO:0008496; mannan endo-1,6-alpha-mannosidase activity
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL046C and YMR238W; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; gene "SPBC1198.06c" ; product "mannan endo-1,6-alpha-mannosidase (predicted)" ;
chromosome2 GeneDB CDS 182825 184225 . - . mRNA SPBC1198.06c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 184224 184592 . - . mRNA SPBC1198.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.06c" ; systematic_id "SPBC1198.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 184865 185288 . - . mRNA SPBC1198.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.07c" ; systematic_id "SPBC1198.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 185289 186870 . - . mRNA SPBC1198.07c ; db_xref "SPD:25/25D12" ; systematic_id "SPBC1198.07c" ; colour "7" ; GO "GO:0031362; anchored to external side of plasma membrane
GO:0008496; mannan endo-1,6-alpha-mannosidase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0051692; cellular oligosaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL046C and YMR238W; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1198.07c" ; product "mannan endo-1,6-alpha-mannosidase (predicted)" ;
chromosome2 GeneDB CDS 185289 186535 . - . mRNA SPBC1198.07c ; colour "7" ;
chromosome2 GeneDB CDS 186594 186870 . - . mRNA SPBC1198.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 186536 186550 . - . misc_feature unknown_56 ; colour "6" ; note "ttaaccatatttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 186588 186593 . - . misc_feature unknown_57 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 187395 187429 . + . mRNA SPBC1198.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.08" ; systematic_id "SPBC1198.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 187430 188979 . + . mRNA SPBC1198.08 ; db_xref "SPD:45/45A05" ; systematic_id "SPBC1198.08" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0070573; metallodipeptidase activity
GO:0006751; glutathione catabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPBC1198.08" ; product "dipeptidase Dug1 (predicted)" ;
chromosome2 GeneDB CDS 187430 187455 . + . mRNA SPBC1198.08 ; colour "7" ;
chromosome2 GeneDB CDS 187581 188979 . + . mRNA SPBC1198.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 187456 187461 . + . misc_feature unknown_58 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 187567 187580 . + . misc_feature unknown_59 ; colour "6" ; note "ctaacactttatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 188980 189048 . + . mRNA SPBC1198.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.08" ; systematic_id "SPBC1198.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 189432 189664 . + . mRNA SPBC1198.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.09" ; systematic_id "SPBC1198.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 189665 190205 . + . mRNA SPBC1198.09 ; systematic_id "SPBC1198.09" ; colour "7" ; gene "ubc16 ||| SPBC1198.09" ; Alias "ubc16" ; db_xref "SPD:31/31E08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR133W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0007031; peroxisome organization and biogenesis" ; primary_name "ubc16" ; product "ubiquitin conjugating enzyme Ubc16 (predicted)" ; EC_number "6.3.2.19" ;
chromosome2 GeneDB CDS 189665 189919 . + . mRNA SPBC1198.09 ; colour "7" ;
chromosome2 GeneDB CDS 189978 190205 . + . mRNA SPBC1198.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 189920 189925 . + . misc_feature unknown_60 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 190206 191135 . + . mRNA SPBC1198.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.09" ; systematic_id "SPBC1198.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 190207 191676 . - . mRNA SPBC1198.10c ; systematic_id "SPBC1198.10c" ; colour "7" ; gene "SPBC1198.10c ||| slm5" ; Alias "slm5" ; db_xref "KEGG:MAP00252; ||| KEGG:MAP00970; ||| SPD:23/23F09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; GO "GO:0006421; asparaginyl-tRNA aminoacylation
GO:0004816; asparagine-tRNA ligase activity
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0003676; nucleic acid binding" ; primary_name "slm5" ; product "mitochondrial asparagine-tRNA ligase Slm5 (predicted)" ; EC_number "6.1.1.22" ;
chromosome2 GeneDB CDS 190207 191217 . - . mRNA SPBC1198.10c ; colour "7" ;
chromosome2 GeneDB CDS 191288 191414 . - . mRNA SPBC1198.10c ; colour "7" ;
chromosome2 GeneDB CDS 191489 191676 . - . mRNA SPBC1198.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 191218 191233 . - . misc_feature unknown_61 ; colour "6" ; note "ctaatccggaatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 191282 191287 . - . misc_feature unknown_62 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 191415 191436 . - . misc_feature unknown_63 ; colour "6" ; note "ttaatttattatcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 191483 191488 . - . misc_feature unknown_64 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 191936 193542 . - . mRNA SPBC1198.11c ; systematic_id "SPBC1198.11c" ; colour "2" ; gene "reb1 ||| SPBC1198.11c ||| SPBC660.01c" ; Alias "reb1" ; db_xref "SPD:25/25G05" ; synonym "SPBC660.01c" ; GO "GO:0005730; nucleolar
GO:0003716; RNA polymerase I transcription termination factor activity
GO:0043110; rDNA spacer replication fork barrier binding
GO:0071946; cis-acting DNA replication termination
GO:0031582; replication fork blocking at rDNA repeats
GO:0006363; transcription termination from RNA polymerase I promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14673172; date=19700101 ||| term=DNA binding specificity, binds rDIS 5'-AGGTAAGGGTAATGCAC-3'; db_xref=PMID:9016645; cv=DNA_binding_specificity; date=19700101 ||| term=orthologous to S. cerevisiae YBR049C and YDR026c; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=subunit composition, homodimeric; db_xref=PMID:18257517; date=20101006" ; primary_name "reb1" ; product "RNA polymerase I transcription termination factor Reb1" ;
chromosome2 GeneDB CDS 191936 192146 . - . mRNA SPBC1198.11c ; colour "2" ;
chromosome2 GeneDB CDS 192198 192524 . - . mRNA SPBC1198.11c ; colour "2" ;
chromosome2 GeneDB CDS 192566 193542 . - . mRNA SPBC1198.11c ; colour "2" ;
chromosome2 GeneDB misc_feature 192061 199133 . + . misc_feature unknown_65 ; note "nominal overlap with cosmid SPBC660 and SPBC1198" ;
chromosome2 GeneDB misc_feature 192147 192156 . - . misc_feature unknown_66 ; colour "6" ; note "ttaatttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 192147 192164 . - . misc_feature unknown_67 ; colour "6" ; note "ctaatattttaatttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 192192 192197 . - . misc_feature unknown_68 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 192525 192535 . - . misc_feature unknown_69 ; colour "6" ; note "ttaacgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 192560 192565 . - . misc_feature unknown_70 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 193541 193610 . - . mRNA SPBC1198.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.11c" ; systematic_id "SPBC1198.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 194678 195989 . + . mRNA SPBC1198.12 ; systematic_id "SPBC1198.12" ; colour "2" ; db_xref "SPD:22/22H02" ; Alias "mfr1" ; synonym "SPBC660.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=Cdc20/Fizzy subfamily; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0051487; anaphase-promoting complex activation during meiotic cell cycle
GO:0007126; meiosis
GO:0007138; meiotic anaphase II
GO:0030437; sporulation (sensu Fungi)" ; primary_name "mfr1" ; product "fizzy-related protein Mfr1" ;
chromosome2 GeneDB CDS 194678 194798 . + . mRNA SPBC1198.12 ; colour "2" ;
chromosome2 GeneDB CDS 194845 195989 . + . mRNA SPBC1198.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 194799 194804 . + . misc_feature unknown_71 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 194832 194844 . + . misc_feature unknown_72 ; colour "6" ; note "ctaacgacagcag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 195990 197075 . - . mRNA SPBC1198.13c ; systematic_id "SPBC1198.13c" ; colour "7" ; gene "tfg2 ||| SPBC1198.13c ||| SPBC660.03c" ; Alias "tfg2" ; db_xref "SPD:16/16H07" ; synonym "SPBC660.03c" ; GO "GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity
GO:0005674; transcription factor TFIIF complex
GO:0004003; ATP-dependent DNA helicase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tfg2" ; product "transcription factor TFIIF complex beta subunit Tfg2 (predicted)" ;
chromosome2 GeneDB CDS 195990 196244 . - . mRNA SPBC1198.13c ; colour "7" ;
chromosome2 GeneDB CDS 196348 196491 . - . mRNA SPBC1198.13c ; colour "7" ;
chromosome2 GeneDB CDS 196551 197075 . - . mRNA SPBC1198.13c ; colour "7" ;
chromosome2 GeneDB misc_feature 196245 196262 . - . misc_feature unknown_73 ; colour "6" ; note "ctaatgaattcatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 196342 196347 . - . misc_feature unknown_74 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 196492 196507 . - . misc_feature unknown_75 ; colour "6" ; note "ctaacttttttttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 196545 196550 . - . misc_feature unknown_76 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 197074 197132 . - . mRNA SPBC1198.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1198.13c" ; systematic_id "SPBC1198.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 198099 199142 . - . mRNA SPBC1198.14c ; systematic_id "SPBC1198.14c" ; colour "2" ; gene "SPBC1198.14c ||| fbp1 ||| SPBC660.04c" ; Alias "fbp1" ; db_xref "SPD:40/40C06" ; synonym "SPBC660.04c" ; GO "GO:0044262; cellular carbohydrate metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR377C; date=19700101 ||| term=gene expression, transcriptionally repressed by cAMP signaling pathway; db_xref=PMID:1849107; cv=gene_ex; date=20070704 ||| term=gene expression, transcriptionally regulated by Cyr1; qualifier=indirect|activated_form; db_xref=PMID:8001792; cv=gene_ex; date=20070704 ||| term=gene expression, transcriptionally regulated by Gpa2; qualifier=indirect; db_xref=PMID:8001792; cv=gene_ex; date=20070704 ||| term=gene expression, transcriptionally regulated by Tup11; cv=gene_ex; db_xref=PMID:11238405; date=20070704 ||| term=gene expression, transcriptionally regulated by Tup12; cv=gene_ex; db_xref=PMID:11238405; date=20070704 ||| term=gene expression, transcriptionally regulated by CCAAT complex; db_xref=PMID:11238405; cv=gene_ex; date=20070704 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fbp1" ; product "fructose-1,6-bisphosphatase Fbp1" ;
chromosome2 GeneDB CDS 198099 199142 . - . mRNA SPBC1198.14c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 199143 199414 . - . mRNA SPBC1198.14c ; ID "SPBC1198.14c" ; db_xref "PMID:2558974" ; systematic_id "SPBC1198.14c" ;
chromosome2 GeneDB misc_feature 199143 202535 . + . misc_feature unknown_77 ; note "low-complexity gene-free region" ;
chromosome2 GeneDB 5'-UTR 202302 202535 . + . mRNA SPBC660.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.05" ; systematic_id "SPBC660.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 202536 202967 . + . mRNA SPBC660.05 ; db_xref "SPD:03/03E12" ; systematic_id "SPBC660.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=orthologous to S. cerevisiae YFL010C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=genome organization, tandem duplication; cv=genome_org; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC660.05" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 202536 202967 . + . mRNA SPBC660.05 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 202968 203565 . + . mRNA SPBC660.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.05" ; systematic_id "SPBC660.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 204503 204648 . + . mRNA SPBC660.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.06" ; systematic_id "SPBC660.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 204649 205470 . + . mRNA SPBC660.06 ; db_xref "SPD:10/10F02" ; systematic_id "SPBC660.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=orthologous to S. cerevisiae YFL010C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=genome organization, tandem duplication; cv=genome_org; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC660.06" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 204649 205470 . + . mRNA SPBC660.06 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 205471 205546 . + . mRNA SPBC660.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.06" ; systematic_id "SPBC660.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 206592 207077 . + . mRNA SPBC660.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.07" ; systematic_id "SPBC660.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 207078 209285 . + . mRNA SPBC660.07 ; systematic_id "SPBC660.07" ; colour "2" ; db_xref "SPD:50/50A10" ; Alias "ntp1" ; GO "GO:0004555; alpha,alpha-trehalase activity
GO:0005509; calcium ion binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034605; cellular response to heat
GO:0034599; cellular response to oxidative stress
GO:0009409; response to cold
GO:0006970; response to osmotic stress
GO:0030437; sporulation (sensu Fungi)
GO:0005991; trehalose metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR001C and YBR001C; date=19700101 ||| term=target of SAPK pathway; db_xref=PMID:15164362; date=19700101 ||| term=gene expression, promoter contains CRE element; db_xref=PMID:15164362; cv=gene_ex; date=19700101 ||| term=gene expression, promoter contains HSE element; db_xref=PMID:15164362; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:15164362; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by Hsf1; db_xref=PMID:15164362; cv=gene_ex; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15965654; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15965654; date=20090213" ; primary_name "ntp1" ; product "alpha,alpha-trehalase Ntp1" ; EC_number "3.2.1.28" ;
chromosome2 GeneDB CDS 207078 209285 . + . mRNA SPBC660.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 209286 209508 . + . mRNA SPBC660.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.07" ; systematic_id "SPBC660.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 209920 209984 . + . mRNA SPBC660.08 ; Alias "mug167" ; ID "SPBC660.08" ; systematic_id "SPBC660.08" ; primary_name "mug167" ; note "mRNA from spc02425" ;
chromosome2 GeneDB CDS_parts 209985 211172 . + . mRNA SPBC660.08 ; db_xref "SPD:18/18H09" ; systematic_id "SPBC660.08" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC660.08 ||| mug167" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 209985 211172 . + . mRNA SPBC660.08 ; colour "8" ;
chromosome2 GeneDB CDS_parts 211511 211858 . + . mRNA SPBC660.09 ; systematic_id "SPBC660.09" ; colour "8" ; gene "SPBC660.09 ||| mug168" ; db_xref "SPD:02/02B08" ; Alias "mug168" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug168" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 211511 211858 . + . mRNA SPBC660.09 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 211859 212091 . + . mRNA SPBC660.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.09" ; systematic_id "SPBC660.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 212375 214899 . + . mRNA SPBC660.10 ; db_xref "SPD:29/29C01" ; systematic_id "SPBC660.10" ; colour "7" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation
GO:0005739; mitochondrion
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL102W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC660.10" ; product "mitochondrial translation elongation factor G (predicted)" ;
chromosome2 GeneDB CDS 212375 212491 . + . mRNA SPBC660.10 ; colour "7" ;
chromosome2 GeneDB CDS 212575 214899 . + . mRNA SPBC660.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 212492 212497 . + . misc_feature unknown_78 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 212554 212574 . + . misc_feature unknown_79 ; colour "6" ; note "ctaactttttaatag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 215123 215146 . + . mRNA SPBC660.11 ; Alias "tcg1" ; ID "SPBC660.11" ; db_xref "EMBL:AY007252" ; systematic_id "SPBC660.11" ; primary_name "tcg1" ;
chromosome2 GeneDB CDS_parts 215147 216496 . + . mRNA SPBC660.11 ; systematic_id "SPBC660.11" ; colour "2" ; gene "tcg1 ||| SPBC660.11 ||| mug187" ; Alias "tcg1" ; db_xref "SPD:20/20H08" ; synonym "mug187" ; GO "GO:0043047; single-stranded telomeric DNA binding
GO:0000723; telomere maintenance
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=complementation, functionally complements S. cerevisiae cdc13-1; db_xref=PMID:12519786; cv=complementation; date=19700101 ||| term=orthologous to S. cerevisiae YLL046C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tcg1" ; product "single-stranded telomeric binding protein Tgc1" ;
chromosome2 GeneDB CDS 215147 215355 . + . mRNA SPBC660.11 ; colour "2" ;
chromosome2 GeneDB CDS 215606 215807 . + . mRNA SPBC660.11 ; colour "2" ;
chromosome2 GeneDB CDS 215861 216496 . + . mRNA SPBC660.11 ; colour "2" ;
chromosome2 GeneDB misc_feature 215356 215361 . + . misc_feature unknown_80 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 215356 215605 . + . intron SPBC660.11 ; Alias "tcg1" ; db_xref "EMBL:AY007252" ; systematic_id "SPBC660.11" ; primary_name "tcg1" ; note "intron confirmed by mRNA AY007252" ;
chromosome2 GeneDB misc_feature 215592 215605 . + . misc_feature unknown_81 ; colour "6" ; note "ctaatgctttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 215808 215813 . + . misc_feature unknown_82 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 215808 215860 . + . intron SPBC660.11 ; Alias "tcg1" ; db_xref "EMBL:AY007252" ; systematic_id "SPBC660.11" ; primary_name "tcg1" ; note "intron confirmed by mRNA AY007252" ;
chromosome2 GeneDB misc_feature 215849 215860 . + . misc_feature unknown_83 ; colour "6" ; note "ctgacacattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 216497 216698 . + . mRNA SPBC660.11 ; Alias "tcg1" ; ID "SPBC660.11" ; db_xref "EMBL:AY007252" ; systematic_id "SPBC660.11" ; primary_name "tcg1" ;
chromosome2 GeneDB 3'-UTR 216931 217000 . - . mRNA SPBC660.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.12c" ; systematic_id "SPBC660.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 217001 218179 . - . mRNA SPBC660.12c ; db_xref "SPD:18/18F12" ; systematic_id "SPBC660.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBC660.12c" ; product "aminotransferase (predicted)" ;
chromosome2 GeneDB CDS 217001 218179 . - . mRNA SPBC660.12c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 218178 218360 . - . mRNA SPBC660.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.12c" ; systematic_id "SPBC660.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 219182 219361 . - . mRNA SPBC660.13c ; ID "SPBC660.13c" ; systematic_id "SPBC660.13c" ; note "mRNA from SPU59385" ;
chromosome2 GeneDB CDS_parts 219362 221260 . - . mRNA SPBC660.13c ; systematic_id "SPBC660.13c" ; colour "2" ; gene "ssb1 ||| rpa1 ||| rad11 ||| SPBC660.13c" ; Alias "ssb1" ; db_xref "SPD:46/46B02" ; synonym "rpa1 ||| rad11" ; GO "GO:0005662; DNA replication factor A complex
GO:0000781; chromosome, telomeric region
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003697; single-stranded DNA binding
GO:0006281; DNA repair
GO:0006269; DNA replication, synthesis of RNA primer
GO:0006261; DNA replication
GO:0000724; double-strand break repair via homologous recombination
GO:0000723; telomere maintenance
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9111307; date=20061127 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9111307; date=20100712 ||| term=phenotype, mononucleate; db_xref=PMID:9111307; qualifier=deletion; date=20100712 ||| term=phenotype, cut; qualifier=deletion; db_xref=PMID:9111307; date=20100712 ||| term=phenotype, septation defects; qualifier=deletion; db_xref=PMID:9111307; date=20100712 ||| term=gene expression, expressed during S phase; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YAR007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; primary_name "ssb1" ; product "DNA replication factor A subunit Ssb1" ;
chromosome2 GeneDB CDS 219362 221150 . - . mRNA SPBC660.13c ; colour "2" ;
chromosome2 GeneDB CDS 221220 221260 . - . mRNA SPBC660.13c ; colour "2" ;
chromosome2 GeneDB misc_feature 221151 221167 . - . misc_feature unknown_84 ; colour "6" ; note "ttaacacgtttctttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 221151 221219 . - . intron SPBC660.13c ; systematic_id "SPBC660.13c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 221214 221219 . - . misc_feature unknown_85 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 221259 221277 . - . mRNA SPBC660.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.13c" ; systematic_id "SPBC660.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 221495 221698 . + . mRNA SPBC660.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.14" ; systematic_id "SPBC660.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 221699 223512 . + . mRNA SPBC660.14 ; systematic_id "SPBC660.14" ; colour "2" ; gene "mik1 ||| SPBC660.14" ; Alias "mik1" ; db_xref "SPD:36/36F03" ; GO "GO:0045930; negative regulation of progression through mitotic cell cycle
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0033314; mitotic cell cycle DNA replication checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL187C; date=19700101 ||| term=gene expression, expressed during G1-S phase; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Cdc2; qualifier=phosphorylates; db_xref=PMID:1706223; date=20100820" ; primary_name "mik1" ; product "mitotic inhibitor kinase Mik1" ;
chromosome2 GeneDB CDS 221699 222907 . + . mRNA SPBC660.14 ; colour "2" ;
chromosome2 GeneDB CDS 222976 223512 . + . mRNA SPBC660.14 ; colour "2" ;
chromosome2 GeneDB misc_feature 222908 222913 . + . misc_feature unknown_86 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 222955 222975 . + . misc_feature unknown_87 ; colour "6" ; note "aattcactaaccgaacatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 223513 224081 . + . mRNA SPBC660.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.14" ; systematic_id "SPBC660.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 224303 224328 . + . mRNA SPBC660.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.15" ; systematic_id "SPBC660.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 224329 226239 . + . mRNA SPBC660.15 ; db_xref "SPD:26/26F08" ; systematic_id "SPBC660.15" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005849; mRNA cleavage factor complex
GO:0005634; nucleus
GO:0003723; RNA binding
GO:0003730; mRNA 3'-UTR binding
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YOL123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human MSI2 ortholog; date=20100217" ; gene "SPBC660.15" ; product "mRNA cleavage factor complex subunit (predicted)" ;
chromosome2 GeneDB CDS 224329 224375 . + . mRNA SPBC660.15 ; colour "7" ;
chromosome2 GeneDB CDS 224424 224864 . + . mRNA SPBC660.15 ; colour "7" ;
chromosome2 GeneDB CDS 224937 224977 . + . mRNA SPBC660.15 ; colour "7" ;
chromosome2 GeneDB CDS 225299 225462 . + . mRNA SPBC660.15 ; colour "7" ;
chromosome2 GeneDB CDS 225508 226239 . + . mRNA SPBC660.15 ; colour "7" ;
chromosome2 GeneDB misc_feature 224376 224381 . + . misc_feature unknown_88 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 224405 224423 . + . misc_feature unknown_89 ; colour "6" ; note "ctaattatcgattaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 224865 224870 . + . misc_feature unknown_90 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 224920 224936 . + . misc_feature unknown_91 ; colour "6" ; note "ctaaccagatattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 224978 224983 . + . misc_feature unknown_92 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 225281 225298 . + . misc_feature unknown_93 ; colour "6" ; note "ctaatgtttgatttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 225463 225468 . + . misc_feature unknown_94 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 225493 225507 . + . misc_feature unknown_95 ; colour "6" ; note "ctaataaataatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_RNA 227372 227760 . + . misc_RNA SPNCRNA.62 ; Alias "prl62" ; db_xref "EMBL:AB084874 ||| PMID:12597277" ; systematic_id "SPNCRNA.62" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl62" ; gene "prl62 ||| SPNCRNA.62" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB misc_RNA 227377 227756 . + . misc_RNA SPNCRNA.101 ; db_xref "EMBL:AU012817" ; systematic_id "SPNCRNA.101" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU012817; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU012817; date=20050412" ; gene "SPNCRNA.101" ; product "non-coding RNA (predicted)" ; note "RNA not associated with an orf; dbj|AU012817|AU012817 Schizosaccharomyces pombe cDNA, clone spc07314" ;
chromosome2 GeneDB misc_RNA 227847 228309 . + . misc_RNA SPNCRNA.102 ; db_xref "EMBL:AU012311" ; systematic_id "SPNCRNA.102" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU012311; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU012311; date=20050412" ; gene "SPNCRNA.102" ; product "non-coding RNA (predicted)" ; note "RNA not associated with an orf; dbj|AU012311|AU012311 Schizosaccharomyces pombe cDNA, clone spc06604" ;
chromosome2 GeneDB 5'-UTR 230318 230367 . + . mRNA SPBC660.16 ; ID "SPBC660.16" ; db_xref "EMBL:D89161" ; systematic_id "SPBC660.16" ;
chromosome2 GeneDB CDS_parts 230368 233061 . + . mRNA SPBC660.16 ; db_xref "KEGG:MAP00030; ||| SPD:38/38H12" ; systematic_id "SPBC660.16" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, 6- phosphogluconate dehydrogenase deficiency; date=20061120 ||| term=subunit composition, homotetrameric; evidence=IDA; db_xref=PMID:10099784; cv=subunit_composition; date=20061122 ||| term=orthologous to S. cerevisiae YHR183W and YGR256W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009051; pentose-phosphate shunt, oxidative branch
GO:0004616; phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0050661; NADP binding" ; gene "SPBC660.16" ; product "phosphogluconate dehydrogenase, decarboxylating" ; EC_number "1.1.1.44" ;
chromosome2 GeneDB CDS 230368 230384 . + . mRNA SPBC660.16 ; colour "2" ;
chromosome2 GeneDB CDS 230446 230450 . + . mRNA SPBC660.16 ; colour "2" ;
chromosome2 GeneDB CDS 230616 230679 . + . mRNA SPBC660.16 ; colour "2" ;
chromosome2 GeneDB CDS 231497 231564 . + . mRNA SPBC660.16 ; colour "2" ;
chromosome2 GeneDB CDS 231737 233061 . + . mRNA SPBC660.16 ; colour "2" ;
chromosome2 GeneDB misc_feature 230385 230390 . + . misc_feature unknown_96 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 230385 230445 . + . intron SPBC660.16 ; db_xref "EMBL:D89161" ; systematic_id "SPBC660.16" ; note "confirmed by mRNA D89161" ;
chromosome2 GeneDB misc_feature 230427 230445 . + . misc_feature unknown_97 ; colour "6" ; note "ctaacattttcccctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 230451 230456 . + . misc_feature unknown_98 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 230451 230615 . + . intron SPBC660.16 ; db_xref "EMBL:D89161" ; systematic_id "SPBC660.16" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 230599 230615 . + . misc_feature unknown_99 ; colour "6" ; note "ttaactttttgccaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 230680 230685 . + . misc_feature unknown_100 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 230680 231496 . + . intron SPBC660.16 ; db_xref "EMBL:D89161" ; systematic_id "SPBC660.16" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 231482 231496 . + . misc_feature unknown_101 ; colour "6" ; note "ctaacatcattgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 231565 231570 . + . misc_feature unknown_102 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome2 GeneDB intron 231565 231736 . + . intron SPBC660.16 ; db_xref "EMBL:D89161" ; systematic_id "SPBC660.16" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 231716 231736 . + . misc_feature unknown_103 ; colour "6" ; note "ctaacggttctttttcttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 233062 233218 . + . mRNA SPBC660.16 ; ID "SPBC660.16" ; systematic_id "SPBC660.16" ; note "mRNA from SPD275" ;
chromosome2 GeneDB 3'-UTR 233267 233633 . - . mRNA SPBC660.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC660.17c" ; systematic_id "SPBC660.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 233634 234248 . - . mRNA SPBC660.17c ; db_xref "SPD:42/42E01" ; systematic_id "SPBC660.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC660.17c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 233634 234070 . - . mRNA SPBC660.17c ; colour "8" ;
chromosome2 GeneDB CDS 234167 234248 . - . mRNA SPBC660.17c ; colour "8" ;
chromosome2 GeneDB misc_feature 234071 234090 . - . misc_feature unknown_104 ; colour "6" ; note "ctaacatatctatttcgtag, splice branch and acceptor" ;
chromosome2 GeneDB intron 234071 234166 . - . intron SPBC660.17c ; systematic_id "SPBC660.17c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 234161 234166 . - . misc_feature unknown_105 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 234249 234309 . - . mRNA SPBC660.17c ; ID "SPBC660.17c" ; systematic_id "SPBC660.17c" ; note "mRNA from AU007990" ;
chromosome2 GeneDB 3'-UTR 234477 234502 . - . mRNA SPBC31E1.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31E1.01c" ; systematic_id "SPBC31E1.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 234503 239513 . - . mRNA SPBC31E1.01c ; systematic_id "SPBC31E1.01c" ; colour "2" ; db_xref "SPD:31/31A11" ; Alias "atg2" ; synonym "mug36 ||| SPBC660.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL242W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0030242; peroxisome degradation
GO:0032258; CVT pathway
GO:0030437; sporulation (sensu Fungi)
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; primary_name "atg2" ; product "autophagy associated protein Atg2" ;
chromosome2 GeneDB CDS 234503 234523 . - . mRNA SPBC31E1.01c ; colour "2" ;
chromosome2 GeneDB CDS 234594 239513 . - . mRNA SPBC31E1.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 234524 234538 . - . misc_feature unknown_106 ; colour "6" ; note "ctaacaattctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 234588 234593 . - . misc_feature unknown_107 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 234728 235385 . + . misc_feature unknown_108 ; note "nominal overlap with cosmid SPBC31E1 and cosmid SPBC660" ;
chromosome2 GeneDB 5'-UTR 239512 239592 . - . mRNA SPBC31E1.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31E1.01c" ; systematic_id "SPBC31E1.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 239922 240369 . - . mRNA SPBC31E1.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31E1.02c" ; systematic_id "SPBC31E1.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 240370 243069 . - . mRNA SPBC31E1.02c ; systematic_id "SPBC31E1.02c" ; colour "2" ; gene "pmr1 ||| SPBC31E1.02c" ; Alias "pmr1" ; obsolete_name "pgak2" ; db_xref "SPD:33/33H08" ; GO "GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0005524; ATP binding
GO:0005509; calcium ion binding
GO:0005388; calcium-transporting ATPase activity
GO:0030145; manganese ion binding
GO:0015410; manganese-transporting ATPase activity
GO:0006874; calcium ion homeostasis
GO:0031505; cell wall organization and biogenesis
GO:0033205; cell cycle cytokinesis
GO:0030026; manganese ion homeostasis
GO:0071421; manganese ion transmembrane transport
GO:0050850; positive regulation of calcium- mediated signaling
GO:0006486; protein amino acid glycosylation
GO:0070588; transmembrane calcium ion transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, lemon shaped; db_xref=PMID:15470240; date=20100831 ||| term=disease associated, Hailey- Hailey disease; date=20061010 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL167C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "pmr1" ; product "P-type ATPase, calcium transporting Pmr1" ; EC_number "3.6.3.8" ;
chromosome2 GeneDB CDS 240370 243069 . - . mRNA SPBC31E1.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 243068 243608 . - . mRNA SPBC31E1.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31E1.02c" ; systematic_id "SPBC31E1.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 244611 244951 . - . mRNA SPBC31E1.03 ; systematic_id "SPBC31E1.03" ; colour "2" ; gene "hub1 ||| ubl4 ||| SPBC31E1.03" ; Alias "hub1" ; db_xref "SPD:02/02A09" ; synonym "ubl4" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005515; protein binding
GO:0016567; protein ubiquitination
GO:0034613; cellular protein localization
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15569151; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YNR032C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:15569151; date=20100727" ; primary_name "hub1" ; product "ubiquitin-like protein modifier Hub1" ;
chromosome2 GeneDB CDS 244611 244713 . - . mRNA SPBC31E1.03 ; colour "2" ;
chromosome2 GeneDB CDS 244763 244864 . - . mRNA SPBC31E1.03 ; colour "2" ;
chromosome2 GeneDB CDS 244935 244951 . - . mRNA SPBC31E1.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 244714 244728 . - . misc_feature unknown_109 ; colour "6" ; note "ttaacaaaaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 244757 244762 . - . misc_feature unknown_110 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 244865 244879 . - . misc_feature unknown_111 ; colour "6" ; note "ctaactaaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 244929 244934 . - . misc_feature unknown_112 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 245530 245717 . + . mRNA SPBC31E1.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31E1.04" ; systematic_id "SPBC31E1.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 245718 246855 . + . mRNA SPBC31E1.04 ; systematic_id "SPBC31E1.04" ; colour "2" ; gene "pep12 ||| SPBC31E1.04" ; Alias "pep12" ; db_xref "SPD:17/17H12" ; GO "GO:0006896; Golgi to vacuole transport
GO:0016192; vesicle-mediated transport
GO:0005484; SNAP receptor activity
GO:0006886; intracellular protein transport
GO:0005794; Golgi apparatus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YOR036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pep12" ; product "SNARE Pep12" ;
chromosome2 GeneDB CDS 245718 246297 . + . mRNA SPBC31E1.04 ; colour "2" ;
chromosome2 GeneDB CDS 246428 246585 . + . mRNA SPBC31E1.04 ; colour "2" ;
chromosome2 GeneDB CDS 246640 246855 . + . mRNA SPBC31E1.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 246298 246303 . + . misc_feature unknown_113 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 246409 246427 . + . misc_feature unknown_114 ; colour "6" ; note "ctaacaattttctttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 246586 246591 . + . misc_feature unknown_115 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 246625 246639 . + . misc_feature unknown_116 ; colour "6" ; note "ttaataatgggctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 246856 246960 . + . mRNA SPBC31E1.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31E1.04" ; systematic_id "SPBC31E1.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 247237 247260 . + . mRNA SPBC31E1.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31E1.05" ; systematic_id "SPBC31E1.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 247261 248753 . + . mRNA SPBC31E1.05 ; systematic_id "SPBC31E1.05" ; colour "2" ; gene "gle1 ||| SPBC31E1.05" ; Alias "gle1" ; db_xref "SPD:24/24B02" ; GO "GO:0005643; nuclear periphery
GO:0005643; nuclear pore
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0006415; translational termination
GO:0006413; translational initiation
GO:0031369; translation initiation factor binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, NES; cv=sequence_feature; evidence=ISS; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YDL207W; date=19700101 ||| term=disease associated, motor neurone disease; date=20080908 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18758733; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091123" ; primary_name "gle1" ; product "RNA export factor, cytoplasmic nucleoporin Gle1" ;
chromosome2 GeneDB CDS 247261 247398 . + . mRNA SPBC31E1.05 ; colour "2" ;
chromosome2 GeneDB CDS 247449 248753 . + . mRNA SPBC31E1.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 247399 247404 . + . misc_feature unknown_117 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 247433 247448 . + . misc_feature unknown_118 ; colour "6" ; note "ttaataatgttcttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 248754 248833 . + . mRNA SPBC31E1.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31E1.05" ; systematic_id "SPBC31E1.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 249052 249086 . + . mRNA SPBC31E1.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31E1.06" ; systematic_id "SPBC31E1.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 249087 252499 . + . mRNA SPBC31E1.06 ; systematic_id "SPBC31E1.06" ; colour "7" ; gene "SPBC31E1.06 ||| SPBC800.01 ||| bms1" ; Alias "bms1" ; db_xref "SPD:49/49G01" ; synonym "SPBC800.01" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0006364; rRNA processing
GO:0042255; ribosome assembly" ; controlled_curation "term=human BMS1L ortholog; date=20100701 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL217C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "bms1" ; product "GTP binding protein Bms1 (predicted)" ;
chromosome2 GeneDB CDS 249087 249188 . + . mRNA SPBC31E1.06 ; colour "7" ;
chromosome2 GeneDB CDS 249236 252499 . + . mRNA SPBC31E1.06 ; colour "7" ;
chromosome2 GeneDB misc_feature 249189 249194 . + . misc_feature unknown_119 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 249223 249235 . + . misc_feature unknown_120 ; colour "6" ; note "ctaataagaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 251471 251647 . + . misc_feature unknown_121 ; note "nominal overlap between cosmid SPBC31E1 and cosmid SPBC800" ;
chromosome2 GeneDB 3'-UTR 252500 252571 . + . mRNA SPBC31E1.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31E1.06" ; systematic_id "SPBC31E1.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 253148 253984 . + . mRNA SPBC800.02 ; systematic_id "SPBC800.02" ; colour "7" ; gene "whi5 ||| SPBC800.02 ||| mug54" ; Alias "whi5" ; db_xref "SPD:10/10H07" ; synonym "mug54" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016566; specific transcriptional repressor activity
GO:0032569; gene-specific transcription from RNA polymerase II promoter
GO:0008361; regulation of cell size
GO:0007346; regulation of mitotic cell cycle
GO:0000083; regulation of transcription involved in G1/S phase of mitotic cell cycle
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR083W; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, WHIskey; cv=name_description; date=20090727 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=warning, gene structure updated; cv=warning; date=20090727 ||| term=modification, phosphorylated; qualifier=predicted; evidence=ISS; cv=pt_mod; date=20090918 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "whi5" ; product "cell cycle transcriptional repressor Whi5 (predicted)" ; reserved_name "whi5" ;
chromosome2 GeneDB CDS 253148 253231 . + . mRNA SPBC800.02 ; colour "7" ;
chromosome2 GeneDB CDS 253352 253984 . + . mRNA SPBC800.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 253232 253237 . + . misc_feature unknown_122 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 253334 253351 . + . misc_feature unknown_123 ; note "ttaacttttgaatacaag splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 254715 254821 . + . mRNA SPBC800.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.03" ; systematic_id "SPBC800.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 254822 256885 . + . mRNA SPBC800.03 ; systematic_id "SPBC800.03" ; colour "2" ; db_xref "SPD:37/37C08" ; Alias "clr3" ; GO "GO:0016581; NuRD complex
GO:0005721; centric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0000790; nuclear chromatin
GO:0030874; nucleolar chromatin
GO:0033553; rDNA heterochromatin
GO:0031933; telomeric heterochromatin
GO:0031078; histone deacetylase activity (H3-K14 specific)
GO:0004407; histone deacetylase activity
GO:0004407; histone deacetylase activity
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0016575; histone deacetylation
GO:0035391; maintenance of chromatin silencing at silent mating-type cassette
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0016584; nucleosome spacing
GO:0031060; regulation of histone methylation
GO:0006357; regulation of transcription from polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL021W; date=19700101 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16079916; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=name description, cryptic loci regulator; cv=name_description; date=20100126" ; primary_name "clr3" ; product "histone deacetylase (class II) Clr3" ;
chromosome2 GeneDB CDS 254822 256885 . + . mRNA SPBC800.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 256886 257138 . + . mRNA SPBC800.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.03" ; systematic_id "SPBC800.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 257454 257525 . + . tRNA SPBTRNAGLN.01 ; systematic_id "SPBTRNAGLN.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033420; CTG codon-amino acid adaptor activity" ; gene "SPBTRNAGLN.01" ; product "tRNA Glutamine" ; note "tRNA Gln anticodon CTG, Cove score 71.48" ;
chromosome2 GeneDB tRNA 257908 257979 . - . tRNA SPBTRNAGLN.02 ; systematic_id "SPBTRNAGLN.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033404; TTG codon-amino acid adaptor activity" ; gene "SPBTRNAGLN.02" ; product "tRNA Glutamine" ; note "tRNA Gln anticodon TTG, Cove score 71.12" ;
chromosome2 GeneDB tRNA 258848 258919 . - . tRNA SPBTRNAGLN.03 ; systematic_id "SPBTRNAGLN.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033420; CTG codon-amino acid adaptor activity" ; gene "SPBTRNAGLN.03" ; product "tRNA Glutamine" ; note "tRNA Gln anticodon CTG, Cove score 71.48" ;
chromosome2 GeneDB 3'-UTR 259506 259576 . - . mRNA SPBC800.04c ; ID "SPBC800.04c" ; systematic_id "SPBC800.04c" ; note "mRNA from spc03862" ;
chromosome2 GeneDB CDS_parts 259577 259961 . - . mRNA SPBC800.04c ; systematic_id "SPBC800.04c" ; colour "7" ; gene "rpl4301 ||| rpl43-1 ||| rpl43 ||| SPBC800.04c ||| rpl37a-1" ; Alias "rpl4301" ; db_xref "SPD:31/31D01" ; synonym "rpl43-1 ||| rpl43 ||| rpl37a-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR043W and YJR094W-A; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl4301" ; product "60S ribosomal protein L37a (predicted)" ;
chromosome2 GeneDB CDS 259577 259704 . - . mRNA SPBC800.04c ; colour "7" ;
chromosome2 GeneDB CDS 259805 259961 . - . mRNA SPBC800.04c ; colour "7" ;
chromosome2 GeneDB misc_feature 259705 259719 . - . misc_feature unknown_124 ; colour "6" ; note "ctaactatgaaatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 259705 259804 . - . intron SPBC800.04c ; systematic_id "SPBC800.04c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 259799 259804 . - . misc_feature unknown_125 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 259960 259998 . - . mRNA SPBC800.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.04c" ; systematic_id "SPBC800.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 260381 260724 . - . mRNA SPBC800.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.05c" ; systematic_id "SPBC800.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 260725 262074 . - . mRNA SPBC800.05c ; systematic_id "SPBC800.05c" ; colour "2" ; gene "tub1 ||| atb2 ||| alp2 ||| SPBC800.05c ||| ban5" ; Alias "atb2" ; db_xref "SPD:32/32H06" ; synonym "tub1 ||| alp2 ||| ban5" ; GO "GO:0005874; microtubule
GO:0005525; GTP binding
GO:0046982; protein heterodimerization activity
GO:0005200; structural constituent of cytoskeleton
GO:0007163; establishment and/or maintenance of cell polarity
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0048311; mitochondrion distribution" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9658169; date=19700101 ||| term=phenotype, cell morphology, curved; qualifier=deletion; db_xref=PMID:8522609; date=20100731 ||| term=orthologous to S. cerevisiae YML085C and YML124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atb2" ; product "tubulin alpha 2" ;
chromosome2 GeneDB CDS 260725 262074 . - . mRNA SPBC800.05c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 262073 262087 . - . mRNA SPBC800.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.05c" ; systematic_id "SPBC800.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 262581 262762 . + . mRNA SPBC800.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.06" ; systematic_id "SPBC800.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 262763 263650 . + . mRNA SPBC800.06 ; systematic_id "SPBC800.06" ; colour "7" ; gene "brx1 ||| SPBC800.06" ; Alias "brx1" ; db_xref "SPD:12/12A08" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0003723; RNA binding
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "brx1" ; product "ribosome biogenesis protein Brx1 (predicted)" ;
chromosome2 GeneDB CDS 262763 263650 . + . mRNA SPBC800.06 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 263651 263669 . + . mRNA SPBC800.06 ; ID "SPBC800.06" ; systematic_id "SPBC800.06" ; note "mRNA from spc08399" ;
chromosome2 GeneDB 3'-UTR 263847 263914 . - . mRNA SPBC800.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.07c" ; systematic_id "SPBC800.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 263915 264814 . - . mRNA SPBC800.07c ; systematic_id "SPBC800.07c" ; colour "2" ; gene "tsf1 ||| SPBC800.07c" ; Alias "tsf1" ; db_xref "SPD:12/12C12" ; GO "GO:0005759; mitochondrial matrix
GO:0005525; GTP binding
GO:0005085; guanyl-nucleotide exchange factor activity
GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tsf1" ; product "mitochondrial translation elongation factor EF- Ts Tsf1" ;
chromosome2 GeneDB CDS 263915 264814 . - . mRNA SPBC800.07c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 264813 264947 . - . mRNA SPBC800.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.07c" ; systematic_id "SPBC800.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 265374 266898 . + . mRNA SPBC800.08 ; systematic_id "SPBC800.08" ; colour "7" ; gene "gcd10 ||| SPBC800.08" ; Alias "gcd10" ; db_xref "SPD:24/24G06" ; GO "GO:0005634; nucleus
GO:0031515; tRNA (m1A) methyltransferase complex
GO:0030488; tRNA methylation
GO:0006413; translational initiation
GO:0016429; tRNA (adenine-N1-)-methyltransferase activity
GO:0000049; tRNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gcd10" ; product "tRNA (m1A) methyltransferase, translation initiation factor eIF-3 gamma subunit Gcd10 (predicted)" ;
chromosome2 GeneDB CDS 265374 265468 . + . mRNA SPBC800.08 ; colour "7" ;
chromosome2 GeneDB CDS 265605 266898 . + . mRNA SPBC800.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 265469 265474 . + . misc_feature unknown_126 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 265586 265604 . + . misc_feature unknown_127 ; colour "6" ; note "ctgactttatattaaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 266899 266980 . + . mRNA SPBC800.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.08" ; systematic_id "SPBC800.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 267459 267489 . + . mRNA SPBC800.09 ; ID "SPBC800.09" ; systematic_id "SPBC800.09" ; note "mRNA from SPD1691" ;
chromosome2 GeneDB CDS_parts 267490 268954 . + . mRNA SPBC800.09 ; systematic_id "SPBC800.09" ; colour "2" ; db_xref "SPD:23/23E11" ; Alias "sum2" ; GO "GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0007095; mitotic G2 checkpoint
GO:0005515; protein binding
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR129W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Suppressor of Uncontrolled Mitosis; cv=name_description; date=20100126" ; primary_name "sum2" ; product "G2/M transition checkpoint protein Sum2" ;
chromosome2 GeneDB CDS 267490 267542 . + . mRNA SPBC800.09 ; colour "2" ;
chromosome2 GeneDB CDS 267581 267639 . + . mRNA SPBC800.09 ; colour "2" ;
chromosome2 GeneDB CDS 267678 267859 . + . mRNA SPBC800.09 ; colour "2" ;
chromosome2 GeneDB CDS 267968 268954 . + . mRNA SPBC800.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 267543 267548 . + . misc_feature unknown_128 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB intron 267543 267580 . + . intron SPBC800.09 ; systematic_id "SPBC800.09" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 267570 267580 . + . misc_feature unknown_129 ; colour "6" ; note "ctaatatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 267640 267645 . + . misc_feature unknown_130 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB intron 267640 267677 . + . intron SPBC800.09 ; systematic_id "SPBC800.09" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 267666 267677 . + . misc_feature unknown_131 ; note "ctaacagtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 267860 267865 . + . misc_feature unknown_132 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 267860 267967 . + . intron SPBC800.09 ; systematic_id "SPBC800.09" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 267954 267967 . + . misc_feature unknown_133 ; colour "6" ; note "ttaactataattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 268955 269408 . + . mRNA SPBC800.09 ; ID "SPBC800.09" ; systematic_id "SPBC800.09" ; note "mRNA from SPD1691" ;
chromosome2 GeneDB 3'-UTR 269676 269706 . - . mRNA SPBC800.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.14c" ; systematic_id "SPBC800.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 269707 270189 . - . mRNA SPBC800.14c ; db_xref "SPD:51/51H11" ; systematic_id "SPBC800.14c" ; controlled_curation "term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; cv=phenotype; db_xref=PMID:20519959; date=20100611" ; colour "10" ; gene "SPBC800.14c" ; product "DUF1772 family protein" ;
chromosome2 GeneDB CDS 269707 270189 . - . mRNA SPBC800.14c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 270188 270226 . - . mRNA SPBC800.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.14c" ; systematic_id "SPBC800.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 270558 270986 . - . mRNA SPBC800.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.10c" ; systematic_id "SPBC800.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 270987 274337 . - . mRNA SPBC800.10c ; db_xref "SPD:30/30D08" ; systematic_id "SPBC800.10c" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0006897; endocytosis
GO:0005509; calcium ion binding
GO:0000147; actin cortical patch assembly
GO:0006886; intracellular protein transport
GO:0006898; receptor-mediated endocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=EF hand; date=19700101 ||| term=EH domains; qualifier=inferred from context; date=19700101 ||| term=UBA domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YBL047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100217 ||| term=human EPS15 ortholog; date=20100217" ; gene "SPBC800.10c" ; product "EPS15 repeat family actin cortical patch component (predicted)" ;
chromosome2 GeneDB CDS 270987 274337 . - . mRNA SPBC800.10c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 274336 274461 . - . mRNA SPBC800.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.10c" ; systematic_id "SPBC800.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 274745 275832 . + . misc_RNA SPNCRNA.299 ; db_xref "PMID:18488015" ; synonym "SPNG1162" ; systematic_id "SPNCRNA.299" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 275671 275906 . + . mRNA SPBC800.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.11" ; systematic_id "SPBC800.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 275907 277076 . + . mRNA SPBC800.11 ; db_xref "SPD:18/18E07" ; systematic_id "SPBC800.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; gene "SPBC800.11" ; product "inosine-uridine preferring nucleoside hydrolase (predicted)" ;
chromosome2 GeneDB CDS 275907 277076 . + . mRNA SPBC800.11 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 277077 277100 . + . mRNA SPBC800.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.11" ; systematic_id "SPBC800.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 278147 278246 . - . mRNA SPBC800.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC800.12c" ; systematic_id "SPBC800.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 278247 278758 . - . mRNA SPBC800.12c ; systematic_id "SPBC800.12c" ; colour "7" ; gene "SPBC800.12c" ; note "there may be some additional C-terminal exons; the ubiquitin domain appears to be truncated" ; db_xref "SPD:05/05A08" ; GO "GO:0032446; protein modification by small protein conjugation
GO:0070647; protein modification by small protein conjugation ore removal" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "ubiquitin family protein (predicted)" ;
chromosome2 GeneDB CDS 278247 278488 . - . mRNA SPBC800.12c ; colour "7" ;
chromosome2 GeneDB CDS 278530 278593 . - . mRNA SPBC800.12c ; colour "7" ;
chromosome2 GeneDB CDS 278651 278758 . - . mRNA SPBC800.12c ; colour "7" ;
chromosome2 GeneDB misc_feature 278489 278504 . - . misc_feature unknown_134 ; colour "6" ; note "ttaactaaaaatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 278524 278529 . - . misc_feature unknown_135 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 278594 278608 . - . misc_feature unknown_136 ; colour "6" ; note "ctaatagttttatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 278594 278646 . - . intron SPBC800.12c ; systematic_id "SPBC800.12c" ; note "alteRNAtive 5' intron prediction, may use MKLLFRC exon" ;
chromosome2 GeneDB misc_feature 278645 278650 . - . misc_feature unknown_137 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 279664 281103 . + . mRNA SPBC800.13 ; db_xref "SPD:23/23B12" ; systematic_id "SPBC800.13" ; colour "7" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0005634; nucleus
GO:0051276; chromosome organization
GO:0000070; mitotic sister chromatid segregation
GO:0051382; kintochore assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=human CENP-T ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090919" ; gene "SPBC800.13" ; product "histone H4 variant, CENP-T ortholog (predicted)" ;
chromosome2 GeneDB CDS 279664 281103 . + . mRNA SPBC800.13 ; colour "7" ;
chromosome2 GeneDB misc_feature 281410 281570 . + . misc_feature unknown_138 ; note "nominal overlap with cosmid SPBC1773 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 281410 291908 . + . misc_feature unknown_139 ; note "nominal overlap with cosmid SPU41410, EM:U41410 S. pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 281556 281628 . + . mRNA SPBC1773.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.01" ; systematic_id "SPBC1773.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 281629 283548 . + . mRNA SPBC1773.01 ; db_xref "SPD:26/26G05" ; systematic_id "SPBC1773.01" ; colour "7" ; GO "GO:0005516; calmodulin binding
GO:0000751; cell cycle arrest in response to pheromone" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1773.01" ; product "striatin homolog (predicted)" ;
chromosome2 GeneDB CDS 281629 281787 . + . mRNA SPBC1773.01 ; colour "7" ;
chromosome2 GeneDB CDS 281825 282051 . + . mRNA SPBC1773.01 ; colour "7" ;
chromosome2 GeneDB CDS 282096 283548 . + . mRNA SPBC1773.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 281788 281793 . + . misc_feature unknown_140 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome2 GeneDB misc_feature 281814 281824 . + . misc_feature unknown_141 ; colour "6" ; note "ctaatcattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 282052 282057 . + . misc_feature unknown_142 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 282080 282095 . + . misc_feature unknown_143 ; colour "6" ; note "ttaacatgtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 283549 283755 . + . mRNA SPBC1773.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.01" ; systematic_id "SPBC1773.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 283755 283937 . - . mRNA SPBC1773.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.02c" ; systematic_id "SPBC1773.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 283938 284525 . - . mRNA SPBC1773.02c ; db_xref "SPD:06/06D08" ; systematic_id "SPBC1773.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL010W; date=19700101 ||| term=thioredoxin family; date=20081111 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; GO "GO:0005634; nucleus
GO:0008379; thioredoxin peroxidase activity
GO:0045454; cell redox homeostasis
GO:0019430; removal of superoxide radicals
GO:0042744; hydrogen peroxide catabolic process" ; gene "SPBC1773.02c" ; product "thioredoxin peroxidase (predicted)" ; EC_number "1.11.1.-" ;
chromosome2 GeneDB CDS 283938 284525 . - . mRNA SPBC1773.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 284524 284800 . - . mRNA SPBC1773.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.02c" ; systematic_id "SPBC1773.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 285389 285459 . - . tRNA SPBTRNAGLY.04 ; systematic_id "SPBTRNAGLY.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033405; TCC codon-amino acid adaptor activity" ; gene "SPBTRNAGLY.04" ; product "tRNA Glycine" ; note "tRNA Gly anticodon TCC, Cove score 54.33" ;
chromosome2 GeneDB tRNA 285676 285749 . + . tRNA SPBTRNAALA.07 ; systematic_id "SPBTRNAALA.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033446; AGC codon-amino acid adaptor activity" ; gene "SPBTRNAALA.07" ; product "tRNA Alanine" ; note "tRNA Ala anticodon AGC, Cove score 56.39" ;
chromosome2 GeneDB 3'-UTR 285909 286038 . - . mRNA SPBC1773.03c ; ID "SPBC1773.03c" ; systematic_id "SPBC1773.03c" ; note "mRNA from AU007673" ;
chromosome2 GeneDB CDS_parts 286039 287418 . - . mRNA SPBC1773.03c ; db_xref "SPD:44/44D03" ; systematic_id "SPBC1773.03c" ; colour "10" ; GO "GO:0008483; transaminase activity
GO:0030170; pyridoxal phosphate binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; gene "SPBC1773.03c" ; product "aminotransferase class-III, unknown specificty" ;
chromosome2 GeneDB CDS 286039 287418 . - . mRNA SPBC1773.03c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 287417 287883 . - . mRNA SPBC1773.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.03c" ; systematic_id "SPBC1773.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 287590 288017 . - . misc_RNA SPNCRNA.300 ; db_xref "PMID:18488015" ; synonym "SPNG1164" ; systematic_id "SPNCRNA.300" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB 5'-UTR 289533 289624 . + . mRNA SPBC1773.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.04" ; systematic_id "SPBC1773.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 289625 290635 . + . mRNA SPBC1773.04 ; db_xref "SPD:15/15A05" ; systematic_id "SPBC1773.04" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL157W and YOL151W and YGL039W and YDR541C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0043892; mythylglyoxyl reductase (NADPH- dependent) activity
GO:0006696; ergosterol metabolic process" ; gene "SPBC1773.04" ; product "mythylglyoxyl reductase (NADPH-dependent) (predicted)" ;
chromosome2 GeneDB CDS 289625 290635 . + . mRNA SPBC1773.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 290636 290758 . + . mRNA SPBC1773.04 ; ID "SPBC1773.04" ; systematic_id "SPBC1773.04" ; note "mRNA from AU007241" ;
chromosome2 GeneDB CDS_parts 290876 291958 . - . mRNA SPBC1773.05c ; systematic_id "SPBC1773.05c" ; colour "2" ; gene "tms1 ||| SPBC1773.05c" ; Alias "tms1" ; db_xref "SPD:40/40C09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=experimental tools, monoclonal antibodies; db_xref=PMID:7737676; cv=ex_tools; date=20050413 ||| term=orthologous to S. cerevisiae YJR159W and YDL246C and YLR070C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003939; L-iditol 2-dehydrogenase activity
GO:0046526; D-xylulose reductase activity
GO:0019407; hexitol catabolism" ; primary_name "tms1" ; product "hexitol dehydrogenase (predicted)" ; EC_number "1.1.1.-" ;
chromosome2 GeneDB CDS 290876 291958 . - . mRNA SPBC1773.05c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 293326 293465 . - . mRNA SPBC1773.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.06c" ; systematic_id "SPBC1773.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 293466 294506 . - . mRNA SPBC1773.06c ; db_xref "SPD:15/15G08" ; systematic_id "SPBC1773.06c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; GO "GO:0006066; alcohol metabolism
GO:0004022; alcohol dehydrogenase activity" ; gene "SPBC1773.06c" ; product "alcohol dehydrogenase (predicted)" ; EC_number "1.1.1.1" ;
chromosome2 GeneDB CDS 293466 294506 . - . mRNA SPBC1773.06c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 294505 294756 . - . mRNA SPBC1773.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.06c" ; systematic_id "SPBC1773.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 296131 296235 . - . mRNA SPBC1773.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.07c" ; systematic_id "SPBC1773.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 296236 297153 . - . mRNA SPBC1773.07c ; systematic_id "SPBC1773.07c" ; colour "2" ; db_xref "SPD:12/12G04" ; Alias "sbp1" ; synonym "yrb1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Spy1; db_xref=PMID:17072883; date=20100825" ; GO "GO:0005525; GTP binding
GO:0006405; RNA export from nucleus
GO:0031291; Ran protein signal transduction
GO:0006606; protein import into nucleus" ; primary_name "sbp1" ; product "Ran GTPase binding protein Sbp1" ;
chromosome2 GeneDB CDS 296236 296306 . - . mRNA SPBC1773.07c ; colour "2" ;
chromosome2 GeneDB CDS 296405 296533 . - . mRNA SPBC1773.07c ; colour "2" ;
chromosome2 GeneDB CDS 296706 297153 . - . mRNA SPBC1773.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 296307 296324 . - . misc_feature unknown_144 ; colour "6" ; note "ctaaccaaacctcgttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 296307 296404 . - . intron SPBC1773.07c ; Alias "sbp1" ; db_xref "EMBL:D76431" ; systematic_id "SPBC1773.07c" ; primary_name "sbp1" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 296399 296404 . - . misc_feature unknown_145 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 296534 296548 . - . misc_feature unknown_146 ; colour "6" ; note "ctaacttgtttttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 296534 296705 . - . intron SPBC1773.07c ; Alias "sbp1" ; db_xref "EMBL:D76431" ; systematic_id "SPBC1773.07c" ; primary_name "sbp1" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 296700 296705 . - . misc_feature unknown_147 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 297152 297178 . - . mRNA SPBC1773.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.07c" ; systematic_id "SPBC1773.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 297726 297770 . - . mRNA SPBC1773.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.08c" ; systematic_id "SPBC1773.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 297771 298946 . - . mRNA SPBC1773.08c ; systematic_id "SPBC1773.08c" ; colour "7" ; gene "SPBC1773.08c" ; Alias "omh4" ; db_xref "SPD:18/18F07" ; GO "GO:0000026; alpha-1,2-mannosyltransferase activity
GO:0000032; cell wall mannoprotein biosynthesis
GO:0035268; protein amino acid mannosylation
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL029C and YIL085C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100525" ; primary_name "omh4" ; product "alpha-1,2-mannosyltransferase Omh4 (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB CDS 297771 298946 . - . mRNA SPBC1773.08c ; colour "7" ;
chromosome2 GeneDB CDS_parts 299347 301214 . - . mRNA SPBC1773.09c ; systematic_id "SPBC1773.09c" ; colour "2" ; gene "mug184 ||| SPBC1773.09c" ; Alias "mug184" ; db_xref "SPD:36/36H10" ; GO "GO:0030544; Hsp70 protein binding
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC11B10.05C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug184" ; product "meiotically upregulated gene Mug184" ;
chromosome2 GeneDB CDS 299347 300074 . - . mRNA SPBC1773.09c ; colour "2" ;
chromosome2 GeneDB CDS 300231 301108 . - . mRNA SPBC1773.09c ; colour "2" ;
chromosome2 GeneDB CDS 301165 301214 . - . mRNA SPBC1773.09c ; colour "2" ;
chromosome2 GeneDB misc_feature 301109 301129 . - . misc_feature unknown_148 ; colour "6" ; note "ctaacatgtaatttattacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 301159 301164 . - . misc_feature unknown_149 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 301213 301356 . - . mRNA SPBC1773.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.09c" ; systematic_id "SPBC1773.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 301797 301981 . - . mRNA SPBC1773.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.10c" ; systematic_id "SPBC1773.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 301982 303688 . - . mRNA SPBC1773.10c ; systematic_id "SPBC1773.10c" ; colour "7" ; gene "SPBC1773.10c ||| nrs1" ; Alias "nrs1" ; db_xref "KEGG:MAP00252; ||| KEGG:MAP00970; ||| SPD:35/35E02" ; synonym "ded81" ; GO "GO:0006421; asparaginyl-tRNA aminoacylation
GO:0004816; asparagine-tRNA ligase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nrs1" ; product "cytoplasmic asparagine-tRNA ligase Nrs1 (predicted)" ; EC_number "6.1.1.22" ;
chromosome2 GeneDB CDS 301982 303688 . - . mRNA SPBC1773.10c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 303687 303720 . - . mRNA SPBC1773.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.10c" ; systematic_id "SPBC1773.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 304713 305300 . - . mRNA SPBC1773.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.11c" ; systematic_id "SPBC1773.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 305301 306491 . - . mRNA SPBC1773.11c ; systematic_id "SPBC1773.11c" ; colour "7" ; gene "SPBC1773.11c ||| mug89" ; Alias "mug89" ; db_xref "SPD:19/19A01" ; GO "GO:0016021; integral to membrane
GO:0005770; late endosome
GO:0005886; plasma membrane
GO:0007166; cell surface receptor linked signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR094W and YNL323W and YNR048W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug89" ; product "CDC50 domain protein, implicated in signal transduction (predicted)" ;
chromosome2 GeneDB CDS 305301 306491 . - . mRNA SPBC1773.11c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 306490 306692 . - . mRNA SPBC1773.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.11c" ; systematic_id "SPBC1773.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 308160 309944 . + . mRNA SPBC1773.12 ; db_xref "SPD:45/45H01" ; systematic_id "SPBC1773.12" ; colour "7" ; GO "GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000228; nuclear chromosome
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPBC1773.16C and SPAC11D3.07c and SPAPB24D3.01; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1773.12" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB CDS 308160 309944 . + . mRNA SPBC1773.12 ; colour "7" ;
chromosome2 GeneDB CDS_parts 310702 312147 . + . mRNA SPBC1773.13 ; db_xref "SPD:44/44F10" ; systematic_id "SPBC1773.13" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0009072; aromatic amino acid family metabolism
GO:0008793; aromatic-amino-acid transaminase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL202W and YHR137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1773.13" ; product "aromatic aminotransferase (predicted)" ;
chromosome2 GeneDB CDS 310702 312147 . + . mRNA SPBC1773.13 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 312148 312246 . + . mRNA SPBC1773.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.13" ; systematic_id "SPBC1773.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 312852 313296 . + . mRNA SPBC1773.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.14" ; systematic_id "SPBC1773.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 313297 314682 . + . mRNA SPBC1773.14 ; systematic_id "SPBC1773.14" ; colour "2" ; gene "arg7 ||| SPBC1773.14" ; Alias "arg7" ; db_xref "SPD:40/40E04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, arginosuccinicaciduria; date=20060920 ||| term=orthologous to S. cerevisiae YHR018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004056; argininosuccinate lyase activity
GO:0006526; arginine biosynthesis
GO:0005829; cytosol
GO:0000050; urea cycle" ; primary_name "arg7" ; product "argininosuccinate lyase" ; EC_number "4.3.2.1" ;
chromosome2 GeneDB CDS 313297 314682 . + . mRNA SPBC1773.14 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 315711 315961 . + . mRNA SPBC1773.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.15" ; systematic_id "SPBC1773.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 315962 317455 . + . mRNA SPBC1773.15 ; db_xref "SPD:24/24B04" ; systematic_id "SPBC1773.15" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0071916; dipeptide transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR152W and YLR004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1773.15" ; product "dipeptide transmembrane transporter (predicted)" ;
chromosome2 GeneDB CDS 315962 317455 . + . mRNA SPBC1773.15 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 317456 317580 . + . mRNA SPBC1773.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.15" ; systematic_id "SPBC1773.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 318461 318692 . - . mRNA SPBC1773.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.16c" ; systematic_id "SPBC1773.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 318693 320480 . - . mRNA SPBC1773.16c ; db_xref "SPD:36/36D02" ; systematic_id "SPBC1773.16c" ; colour "7" ; GO "GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000228; nuclear chromosome
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPBC1773.12 and SPAC11D3.07c and SPAPB24D3.01; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1773.16c" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB CDS 318693 320480 . - . mRNA SPBC1773.16c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 320479 320607 . - . mRNA SPBC1773.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.16c" ; systematic_id "SPBC1773.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 320610 321519 . + . misc_RNA SPNCRNA.301 ; db_xref "PMID:18488015" ; synonym "SPNG1179" ; systematic_id "SPNCRNA.301" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 3'-UTR 321653 321661 . - . mRNA SPBC1773.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.17c" ; systematic_id "SPBC1773.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 321662 322684 . - . mRNA SPBC1773.17c ; systematic_id "SPBC1773.17c" ; colour "7" ; gene "SPBC1773.17c ||| SPBP26C9.01c" ; db_xref "SPD:32/32D01" ; synonym "SPBP26C9.01c" ; GO "GO:0005634; nucleus
GO:0005739; mitochondrion
GO:0005737; cytoplasm
GO:0047964; glyoxylate reductase activity
GO:0009436; glyoxylate catabolic process
GO:0006111; regulation of gluconeogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL274C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; product "glyoxylate reductase (predicted)" ;
chromosome2 GeneDB CDS 321662 322684 . - . mRNA SPBC1773.17c ; colour "7" ;
chromosome2 GeneDB misc_feature 322092 322219 . + . misc_feature unknown_150 ; note "nominal overlap with SPBC1773 S. pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 322683 322972 . - . mRNA SPBC1773.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1773.17c" ; systematic_id "SPBC1773.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 323961 324190 . - . mRNA SPBP26C9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP26C9.02c" ; systematic_id "SPBP26C9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 324191 325162 . - . mRNA SPBP26C9.02c ; systematic_id "SPBP26C9.02c" ; colour "2" ; gene "car1 ||| SPBP26C9.02c" ; Alias "car1" ; db_xref "SPD:32/32B09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, argininemia; date=20091016 ||| term=name description, CAtabolism of aRginine, after cerevisiae; cv=name_description; date=20091016 ||| term=experimental tools, deletion solves arginine-conversion problem; db_xref=PMID:20460254; date=20100601" ; GO "GO:0019547; arginine catabolism to ornithine
GO:0004053; arginase activity
GO:0005829; cytosol" ; primary_name "car1" ; product "arginase Car1" ; EC_number "3.5.3.1" ;
chromosome2 GeneDB CDS 324191 325162 . - . mRNA SPBP26C9.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 325161 325227 . - . mRNA SPBP26C9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP26C9.02c" ; systematic_id "SPBP26C9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 326235 326305 . + . tRNA SPBTRNAGLY.05 ; systematic_id "SPBTRNAGLY.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033405; TCC codon-amino acid adaptor activity" ; gene "SPBTRNAGLY.05" ; product "tRNA Glycine" ; note "tRNA Gly anticodon TCC, Cove score 60.52" ;
chromosome2 GeneDB tRNA 326652 326724 . - . tRNA SPBTRNAARG.04 ; systematic_id "SPBTRNAARG.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033405; TCT codon-amino acid adaptor activity" ; gene "SPBTRNAARG.04" ; product "tRNA Arginine" ; note "tRNA Arg anticodon TCT, Cove score 69.29" ;
chromosome2 GeneDB 3'-UTR 327538 327991 . - . mRNA SPBP26C9.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP26C9.03c" ; systematic_id "SPBP26C9.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 327992 329746 . - . mRNA SPBP26C9.03c ; systematic_id "SPBP26C9.03c" ; colour "2" ; gene "SPBP26C9.03c ||| fet4" ; Alias "fet4" ; db_xref "SPD:33/33D06" ; GO "GO:0005887; integral to plasma membrane
GO:0005381; iron ion transmembrane transporter activity
GO:0005385; zinc ion transmembrane transporter activity
GO:0006826; iron ion transport
GO:0055069; zinc ion homeostasis
GO:0006829; zinc ion transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR319C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "fet4" ; product "iron/zinc ion transporter (predicted)" ;
chromosome2 GeneDB CDS 327992 329746 . - . mRNA SPBP26C9.03c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 329745 330067 . - . mRNA SPBP26C9.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP26C9.03c" ; systematic_id "SPBP26C9.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 329843 333174 . + . misc_feature unknown_151 ; note "low complexity gene free region with (G-C)/(G+C) strandswitch" ;
chromosome2 GeneDB misc_feature 331162 331648 . + . misc_feature unknown_152 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1184" ;
chromosome2 GeneDB misc_feature 332398 333404 . + . misc_feature unknown_153 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1187" ;
chromosome2 GeneDB misc_feature 333082 333181 . + . misc_feature unknown_154 ; note "nominal overlap with cosmid c1271" ;
chromosome2 GeneDB 5'-UTR 333478 334387 . + . mRNA SPBC1271.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.15c" ; systematic_id "SPBC1271.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 334388 336448 . + . mRNA SPBC1271.15c ; db_xref "SPD:46/46D10" ; systematic_id "SPBC1271.15c" ; colour "7" ; GO "GO:0003743; translation initiation factor activity
GO:0005739; mitochondrion
GO:0006413; translational initiation
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YOL023W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1271.15c" ; product "mitochondrial translation initiation factor IF- 2Mt (predicted)" ;
chromosome2 GeneDB CDS 334388 336448 . + . mRNA SPBC1271.15c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 336449 336610 . + . mRNA SPBC1271.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.15c" ; systematic_id "SPBC1271.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 336557 336800 . - . mRNA SPBC1271.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.14" ; systematic_id "SPBC1271.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 336801 338138 . - . mRNA SPBC1271.14 ; db_xref "KEGG:00220; ||| SPD:20/20F12" ; systematic_id "SPBC1271.14" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YMR062C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0005759; mitochondrial matrix
GO:0004042; amino-acid N-acetyltransferase activity
GO:0004358; glutamate N-acetyltransferase activity
GO:0006526; arginine biosynthesis
GO:0006592; ornithine biosynthesis" ; gene "SPBC1271.14" ; product "glutamate N-acetyltransferase (predicted)" ; EC_number "2.3.1.35 ||| 2.3.1.1" ;
chromosome2 GeneDB CDS 336801 338138 . - . mRNA SPBC1271.14 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 338137 338317 . - . mRNA SPBC1271.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.14" ; systematic_id "SPBC1271.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 339346 340012 . - . misc_RNA SPNCRNA.103 ; systematic_id "SPNCRNA.103" ; gene "SPNCRNA.103 ||| sme2 ||| meiRNA" ; note "SPMEIRNA D31852 Fission yeast DNA for meiRNA, complete sequence ||| microarray expression profile on this strand (pers comm. Jurg Bahler)" ; Alias "sme2" ; db_xref "EMBL:D31852" ; synonym "meiRNA" ; GO "GO:0033620; Mei2 nuclear dot
GO:0007126; meiosis" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:D31852; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:D31852; date=20050412" ; primary_name "sme2" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB 3'-UTR 340847 340969 . - . mRNA SPBC1271.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.13" ; systematic_id "SPBC1271.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 340970 341656 . - . mRNA SPBC1271.13 ; systematic_id "SPBC1271.13" ; colour "7" ; gene "SPBC1271.13 ||| mrpl8" ; Alias "mrpl8" ; db_xref "SPD:42/42H12" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0000002; mitochondrial genome maintenance
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL063C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl8" ; product "mitochondrial ribosomal protein subunit L8 (predicted)" ;
chromosome2 GeneDB CDS 340970 341519 . - . mRNA SPBC1271.13 ; colour "7" ;
chromosome2 GeneDB CDS 341583 341656 . - . mRNA SPBC1271.13 ; colour "7" ;
chromosome2 GeneDB misc_feature 341520 341535 . - . misc_feature unknown_155 ; colour "6" ; note "ctaataaatggaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 341577 341582 . - . misc_feature unknown_156 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 341655 341727 . - . mRNA SPBC1271.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.13" ; systematic_id "SPBC1271.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 341980 342408 . - . mRNA SPBC1271.12 ; ID "SPBC1271.12" ; systematic_id "SPBC1271.12" ; note "mRNA from AB016222" ;
chromosome2 GeneDB CDS_parts 342409 344256 . - . mRNA SPBC1271.12 ; systematic_id "SPBC1271.12" ; colour "7" ; gene "kes1 ||| SPBC1271.12" ; Alias "kes1" ; db_xref "SPD:36/36H03" ; GO "GO:0008142; oxysterol binding
GO:0006696; ergosterol biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR001W and YKR003W and YOR237W and YPL145C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "kes1" ; product "oxysterol binding protein (predicted)" ;
chromosome2 GeneDB CDS 342409 342950 . - . mRNA SPBC1271.12 ; colour "7" ;
chromosome2 GeneDB CDS 343010 343322 . - . mRNA SPBC1271.12 ; colour "7" ;
chromosome2 GeneDB CDS 343505 343627 . - . mRNA SPBC1271.12 ; colour "7" ;
chromosome2 GeneDB CDS 343771 343849 . - . mRNA SPBC1271.12 ; colour "7" ;
chromosome2 GeneDB CDS 344022 344047 . - . mRNA SPBC1271.12 ; colour "7" ;
chromosome2 GeneDB CDS 344123 344135 . - . mRNA SPBC1271.12 ; colour "7" ;
chromosome2 GeneDB CDS 344186 344256 . - . mRNA SPBC1271.12 ; colour "7" ;
chromosome2 GeneDB misc_feature 342951 342964 . - . misc_feature unknown_157 ; colour "6" ; note "ctaactcttttcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 342951 343009 . - . intron SPBC1271.12 ; systematic_id "SPBC1271.12" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 343004 343009 . - . misc_feature unknown_158 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 343323 343344 . - . misc_feature unknown_159 ; colour "6" ; note "ctaacatctctgtttcttatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 343323 343504 . - . intron SPBC1271.12 ; systematic_id "SPBC1271.12" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 343499 343504 . - . misc_feature unknown_160 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 343628 343649 . - . misc_feature unknown_161 ; colour "6" ; note "ctaaccaaagtttttttgttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 343628 343770 . - . intron SPBC1271.12 ; systematic_id "SPBC1271.12" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 343765 343770 . - . misc_feature unknown_162 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 343850 343866 . - . misc_feature unknown_163 ; colour "6" ; note "ctaacaactgtatttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 343850 344021 . - . intron SPBC1271.12 ; systematic_id "SPBC1271.12" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 344016 344021 . - . misc_feature unknown_164 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 344048 344064 . - . misc_feature unknown_165 ; colour "6" ; note "ctaatgaatatttcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 344117 344122 . - . misc_feature unknown_166 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 344136 344154 . - . misc_feature unknown_167 ; colour "6" ; note "ctaacggatttgatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 344180 344185 . - . misc_feature unknown_168 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 344972 345363 . - . mRNA SPBC1271.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.11" ; systematic_id "SPBC1271.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 345364 346438 . - . mRNA SPBC1271.11 ; db_xref "SPD:16/16F03" ; systematic_id "SPBC1271.11" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1271.11" ; product "mitochondrial tricarboxylate transporter (predicted)" ;
chromosome2 GeneDB CDS 345364 345947 . - . mRNA SPBC1271.11 ; colour "7" ;
chromosome2 GeneDB CDS 346058 346178 . - . mRNA SPBC1271.11 ; colour "7" ;
chromosome2 GeneDB CDS 346246 346253 . - . mRNA SPBC1271.11 ; colour "7" ;
chromosome2 GeneDB CDS 346310 346337 . - . mRNA SPBC1271.11 ; colour "7" ;
chromosome2 GeneDB CDS 346403 346438 . - . mRNA SPBC1271.11 ; colour "7" ;
chromosome2 GeneDB misc_feature 345948 345964 . - . misc_feature unknown_169 ; colour "6" ; note "ctaactttttgttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 346052 346057 . - . misc_feature unknown_170 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 346179 346200 . - . misc_feature unknown_171 ; colour "6" ; note "cttacatcgttatcttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 346240 346245 . - . misc_feature unknown_172 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 346254 346272 . - . misc_feature unknown_173 ; colour "6" ; note "ttaactctatgtaattcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 346304 346309 . - . misc_feature unknown_174 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 346338 346352 . - . misc_feature unknown_175 ; colour "6" ; note "ctaacatctgtaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 346397 346402 . - . misc_feature unknown_176 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 346437 346455 . - . mRNA SPBC1271.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.11" ; systematic_id "SPBC1271.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 347590 348313 . + . mRNA SPBC1271.10c ; ID "SPBC1271.10c" ; systematic_id "SPBC1271.10c" ; note "mRNA from AU014442" ;
chromosome2 GeneDB CDS_parts 348314 350059 . + . mRNA SPBC1271.10c ; db_xref "SPD:35/35H12" ; systematic_id "SPBC1271.10c" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0006810; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YNR055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1271.10c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 348314 350059 . + . mRNA SPBC1271.10c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 350060 350251 . + . mRNA SPBC1271.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.10c" ; systematic_id "SPBC1271.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 350692 352369 . - . mRNA SPBC1271.09 ; db_xref "SPD:35/35B02" ; systematic_id "SPBC1271.09" ; colour "7" ; GO "GO:0001406; glycerophosphodiester transporter activity
GO:0005886; plasma membrane
GO:0001407; glycerophosphodiester transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YCR098C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1271.09" ; product "glycerophosphodiester transporter (predicted)" ;
chromosome2 GeneDB CDS 350692 350740 . - . mRNA SPBC1271.09 ; colour "7" ;
chromosome2 GeneDB CDS 350787 352369 . - . mRNA SPBC1271.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 350741 350755 . - . misc_feature unknown_177 ; colour "6" ; note "ttaataatttcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 350781 350786 . - . misc_feature unknown_178 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB tRNA 355920 355991 . + . tRNA SPBTRNAGLN.04 ; systematic_id "SPBTRNAGLN.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033404; TTG codon-amino acid adaptor activity" ; gene "SPBTRNAGLN.04" ; product "tRNA Glutamine" ; note "anticodon TTG, Cove score 53.35" ;
chromosome2 GeneDB CDS_parts 356910 357332 . + . mRNA SPBC1271.08c ; db_xref "SPD:03/03D11" ; systematic_id "SPBC1271.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC1271.08c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 356910 357332 . + . mRNA SPBC1271.08c ; colour "8" ;
chromosome2 GeneDB CDS_parts 358855 359346 . + . mRNA SPBC1271.07c ; db_xref "SPD:04/04G01" ; systematic_id "SPBC1271.07c" ; colour "7" ; GO "GO:0008080; N-acetyltransferase activity
GO:0006473; protein amino acid acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBC1271.07c" ; product "N-acetyltransferase (predicted)" ;
chromosome2 GeneDB CDS 358855 359346 . + . mRNA SPBC1271.07c ; colour "7" ;
chromosome2 GeneDB CDS_parts 359903 360343 . + . mRNA SPBC1271.06c ; systematic_id "SPBC1271.06c" ; colour "8" ; gene "SPBC1271.06c ||| mug96" ; db_xref "SPD:03/03G10" ; Alias "mug96" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug96" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 359903 360343 . + . mRNA SPBC1271.06c ; colour "8" ;
chromosome2 GeneDB misc_RNA 360425 362854 . - . misc_RNA SPNCRNA.304 ; db_xref "PMID:18488015" ; synonym "SPNG1193" ; systematic_id "SPNCRNA.304" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB 5'-UTR 362845 363441 . + . mRNA SPBC1271.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.05c" ; systematic_id "SPBC1271.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 363442 364089 . + . mRNA SPBC1271.05c ; db_xref "SPD:07/07D09" ; systematic_id "SPBC1271.05c" ; colour "10" ; GO "GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-AN1 type; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YOR052C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1271.05c" ; product "zf-AN1 type zinc finger protein" ;
chromosome2 GeneDB CDS 363442 364089 . + . mRNA SPBC1271.05c ; colour "10" ;
chromosome2 GeneDB 3'-UTR 364090 364828 . + . mRNA SPBC1271.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.05c" ; systematic_id "SPBC1271.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 365100 365414 . + . mRNA SPBC1271.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.04c" ; systematic_id "SPBC1271.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 365415 366654 . + . mRNA SPBC1271.04c ; db_xref "SPD:19/19G09" ; systematic_id "SPBC1271.04c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR068W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0050983; spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase
GO:0008612; hypusine biosynthesis from peptidyl- lysine
GO:0034038; deoxyhypusine synthase activity
GO:0005737; cytoplasm
GO:0006448; regulation of translational elongation" ; gene "SPBC1271.04c" ; product "eIF-5A-deoxyhypusine synthase (predicted)" ; EC_number "2.5.1.46" ;
chromosome2 GeneDB CDS 365415 365630 . + . mRNA SPBC1271.04c ; colour "7" ;
chromosome2 GeneDB CDS 365766 366542 . + . mRNA SPBC1271.04c ; colour "7" ;
chromosome2 GeneDB CDS 366595 366654 . + . mRNA SPBC1271.04c ; colour "7" ;
chromosome2 GeneDB misc_feature 365631 365636 . + . misc_feature unknown_179 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 365753 365765 . + . misc_feature unknown_180 ; colour "6" ; note "ctaattgttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 366561 366566 . + . misc_feature unknown_181 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 366575 366594 . + . misc_feature unknown_182 ; colour "6" ; note "ctaacttttgatgtctgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 366655 366806 . + . mRNA SPBC1271.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.04c" ; systematic_id "SPBC1271.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 367246 367593 . + . mRNA SPBC1271.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.03c" ; systematic_id "SPBC1271.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 367594 368328 . + . mRNA SPBC1271.03c ; db_xref "SPD:08/08H03" ; systematic_id "SPBC1271.03c" ; colour "7" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0005886; plasma membrane
GO:0006470; protein amino acid dephosphorylation
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YLL010C and YLR019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1271.03c" ; product "NLI interacting factor family phosphatase (predicted)" ;
chromosome2 GeneDB CDS 367594 368328 . + . mRNA SPBC1271.03c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 368329 368403 . + . mRNA SPBC1271.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.03c" ; systematic_id "SPBC1271.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 368510 368557 . - . mRNA SPBC1271.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.02" ; systematic_id "SPBC1271.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 368558 370875 . - . mRNA SPBC1271.02 ; systematic_id "SPBC1271.02" ; colour "2" ; gene "stt3 ||| SPBC1271.02" ; Alias "stt3" ; db_xref "SPD:49/49E02" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0004576; oligosaccharyl transferase activity
GO:0004579; dolichyl-diphosphooligosaccharide- proteinglycotransferase activity
GO:0006487; protein amino acid N-linked glycosylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL022W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "stt3" ; product "oligosaccharyltransferase subunit Stt3" ;
chromosome2 GeneDB CDS 368558 370716 . - . mRNA SPBC1271.02 ; colour "2" ;
chromosome2 GeneDB CDS 370776 370875 . - . mRNA SPBC1271.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 370717 370735 . - . misc_feature unknown_183 ; colour "6" ; note "ttaatcaagtatcttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 370770 370775 . - . misc_feature unknown_184 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 371978 372358 . + . mRNA SPBC1271.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.01c" ; systematic_id "SPBC1271.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 372359 373549 . + . mRNA SPBC1271.01c ; systematic_id "SPBC1271.01c" ; colour "2" ; gene "pof13 ||| SPBC1271.01c" ; note "otholog candidate YMR094W ? check?" ; Alias "pof13" ; db_xref "SPD:19/19A02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0016567; protein ubiquitination
GO:0005515; protein binding" ; primary_name "pof13" ; product "F-box protein Pof13" ;
chromosome2 GeneDB CDS 372359 373549 . + . mRNA SPBC1271.01c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 373550 373628 . + . mRNA SPBC1271.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1271.01c" ; systematic_id "SPBC1271.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 373572 373988 . + . misc_feature unknown_185 ; note "nominal overlap between cosmid SPBC1271 and cosmid SPBC243" ;
chromosome2 GeneDB 5'-UTR 373791 373888 . + . mRNA SPBC106.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.01" ; systematic_id "SPBC106.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 373889 375925 . + . mRNA SPBC106.01 ; systematic_id "SPBC106.01" ; colour "2" ; gene "mph1 ||| SPBC1271.16c ||| SPBC106.01 ||| SPBC243.01" ; Alias "mph1" ; db_xref "SPD:46/46D02" ; synonym "SPBC1271.16c ||| SPBC243.01" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0005816; spindle pole body
GO:0004674; protein serine/threonine kinase activity
GO:0007094; mitotic spindle checkpoint
GO:0034613; cellular protein localization
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=orthologous to S. cerevisiae YDL028C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9601094; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TKK ortholog; date=20100908" ; primary_name "mph1" ; product "dual specificity protein kinase Mph1" ; EC_number "2.7.11.1" ;
chromosome2 GeneDB CDS 373889 375925 . + . mRNA SPBC106.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 375644 376396 . + . misc_feature unknown_186 ; note "nominal overlap between cosmid SPBC243 and cosmid SPBC106" ;
chromosome2 GeneDB 3'-UTR 375926 376210 . + . mRNA SPBC106.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.01" ; systematic_id "SPBC106.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 376323 376461 . - . mRNA SPBC106.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.02c" ; systematic_id "SPBC106.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 376462 376836 . - . mRNA SPBC106.02c ; systematic_id "SPBC106.02c" ; colour "2" ; gene "srx1 ||| SPBC106.02c" ; Alias "srx1" ; db_xref "SPD:02/02F09" ; GO "GO:0034599; cellular response to oxidative stress
GO:0032542; sulfiredoxin activity
GO:0005515; protein binding
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0034613; cellular protein localization
GO:0070301; cellular response to hydrogen peroxide" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to H202; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=orthologous to S. cerevisiae YKL086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=gene expression, transcriptionally regulated by Sty1; evidence=IDA; db_xref=PMID:15824112; cv=gene_ex; date=20050419 ||| term=target is Tpx1; db_xref=PMID:15824112; date=20100825" ; primary_name "srx1" ; product "sulfiredoxin" ;
chromosome2 GeneDB CDS 376462 376836 . - . mRNA SPBC106.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 376835 376983 . - . mRNA SPBC106.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.02c" ; systematic_id "SPBC106.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 377318 377617 . + . misc_RNA SPNCRNA.305 ; db_xref "PMID:18488015" ; synonym "SPNG1197" ; systematic_id "SPNCRNA.305" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 378411 378626 . + . mRNA SPBC106.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.03" ; systematic_id "SPBC106.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 378627 379700 . + . mRNA SPBC106.03 ; db_xref "SPD:16/16E11" ; systematic_id "SPBC106.03" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0016491; oxidoreductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YHR017W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC106.03" ; product "DUF1776 family protein" ;
chromosome2 GeneDB CDS 378627 379700 . + . mRNA SPBC106.03 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 379701 379787 . + . mRNA SPBC106.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.03" ; systematic_id "SPBC106.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 380228 382948 . + . mRNA SPBC106.04 ; systematic_id "SPBC106.04" ; colour "2" ; gene "ada1 ||| SPBC106.04" ; Alias "ada1" ; db_xref "SPD:22/22G11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YML035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0003876; AMP deaminase activity
GO:0006188; IMP biosynthesis" ; primary_name "ada1" ; product "adenosine deaminase Ada1 (predicted)" ; EC_number "3.5.4.6" ;
chromosome2 GeneDB CDS 380228 380265 . + . mRNA SPBC106.04 ; colour "2" ;
chromosome2 GeneDB CDS 380383 380560 . + . mRNA SPBC106.04 ; colour "2" ;
chromosome2 GeneDB CDS 380624 382948 . + . mRNA SPBC106.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 380266 380271 . + . misc_feature unknown_187 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 380372 380382 . + . misc_feature unknown_188 ; colour "6" ; note "ctaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 380561 380566 . + . misc_feature unknown_189 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 380561 380623 . + . intron SPBC106.04 ; systematic_id "SPBC106.04" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 380609 380623 . + . misc_feature unknown_190 ; colour "6" ; note "ctaaccataacctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 382949 383253 . + . mRNA SPBC106.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.04" ; systematic_id "SPBC106.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 383527 383960 . - . mRNA SPBC106.05c ; systematic_id "SPBC106.05c" ; colour "7" ; gene "SPBC106.05c ||| tim11" ; Alias "tim11" ; db_xref "SPD:01/01E10" ; GO "GO:0005198; structural molecule activity
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YDR322C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tim11" ; product "F0-ATPase subunit E (predicted)" ;
chromosome2 GeneDB CDS 383527 383612 . - . mRNA SPBC106.05c ; colour "7" ;
chromosome2 GeneDB CDS 383703 383874 . - . mRNA SPBC106.05c ; colour "7" ;
chromosome2 GeneDB CDS 383940 383960 . - . mRNA SPBC106.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 383613 383628 . - . misc_feature unknown_191 ; colour "6" ; note "ctaatactcaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 383697 383702 . - . misc_feature unknown_192 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 384321 385904 . + . mRNA SPBC106.06 ; systematic_id "SPBC106.06" ; colour "2" ; gene "cct4 ||| SPBC106.06" ; Alias "cct4" ; db_xref "SPD:25/25E06" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YDL143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cct4" ; product "chaperonin-containing T-complex delta subunit Cct4" ;
chromosome2 GeneDB CDS 384321 385904 . + . mRNA SPBC106.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 385905 386001 . + . mRNA SPBC106.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.06" ; systematic_id "SPBC106.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 386506 387009 . - . mRNA SPBC106.07c ; systematic_id "SPBC106.07c" ; colour "7" ; gene "SPBC106.07c" ; note "was previously annotated as an acetyltransferase based on S. cerevisiae data, but this annotation was unconfirmed and has subsequently been removed in SGD" ; db_xref "SPD:04/04H11" ; GO "GO:0005739; mitochondrion
GO:0017196; N-terminal peptidyl-methionine acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YGR147C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "N alpha-acetylation related protein Nat2 (predicted)" ;
chromosome2 GeneDB CDS 386506 387009 . - . mRNA SPBC106.07c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 387008 387100 . - . mRNA SPBC106.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.07c" ; systematic_id "SPBC106.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 387650 387840 . - . mRNA SPBC106.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.08c" ; systematic_id "SPBC106.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 387841 388731 . - . mRNA SPBC106.08c ; systematic_id "SPBC106.08c" ; colour "10" ; gene "SPBC106.08c ||| mug2" ; Alias "mug2" ; obsolete_name "B13958-1" ; db_xref "SPD:12/12B03" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; primary_name "mug2" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 1" ;
chromosome2 GeneDB CDS 387841 388731 . - . mRNA SPBC106.08c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 388730 388806 . - . mRNA SPBC106.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.08c" ; systematic_id "SPBC106.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 390953 390988 . + . mRNA SPBC106.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.09" ; systematic_id "SPBC106.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 390989 395365 . + . mRNA SPBC106.09 ; systematic_id "SPBC106.09" ; colour "2" ; gene "cut4 ||| apc1 ||| SPBC106.09" ; Alias "cut4" ; db_xref "SPD:48/48G04" ; synonym "apc1" ; GO "GO:0008054; cyclin catabolism
GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YNL172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118" ; primary_name "cut4" ; product "anaphase-promoting complex subunit Apc1" ;
chromosome2 GeneDB CDS 390989 395365 . + . mRNA SPBC106.09 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 395366 395735 . + . mRNA SPBC106.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.09" ; systematic_id "SPBC106.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 396752 396991 . + . mRNA SPBC106.10 ; ID "SPBC106.10" ; systematic_id "SPBC106.10" ; note "mRNA from SP08622" ;
chromosome2 GeneDB CDS_parts 396992 398530 . + . mRNA SPBC106.10 ; systematic_id "SPBC106.10" ; colour "2" ; db_xref "SPD:24/24H10" ; Alias "pka1" ; synonym "tpk ||| git6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL164C and YPL203W and YKL166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505 ||| term=pathway, PKA; cv=pathway; date=20091215 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Rst2; qualifier=phosphorylates; db_xref=PMID:11739717; date=20100820 ||| term=target is Mei3; qualifier=phosphorylates; db_xref=PMID:12664134; date=20100820" ; GO "GO:0005952; cAMP-dependent protein kinase complex
GO:0005524; ATP binding
GO:0004691; cAMP-dependent protein kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0001315; cellular age-dependent response to reactive oxygen species
GO:0001315; cellular age-dependent response to reactive oxygen species
GO:0019933; cAMP-mediated signaling
GO:0006995; cellular response to nitrogen starvation
GO:0001300; chronological cell aging
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0045014; negative regulation of transcription by glucose
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0006110; regulation of glycolysis" ; primary_name "pka1" ; product "cAMP-dependent protein kinase catalytic subunit Pka1" ; EC_number "2.7.11.1" ;
chromosome2 GeneDB CDS 396992 398530 . + . mRNA SPBC106.10 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 398531 398957 . + . mRNA SPBC106.10 ; ID "SPBC106.10" ; systematic_id "SPBC106.10" ; note "mRNA from SP08622" ;
chromosome2 GeneDB 3'-UTR 399003 399367 . - . mRNA SPBC106.11c ; ID "SPBC106.11c" ; systematic_id "SPBC106.11c" ; note "mRNA from AU007025" ;
chromosome2 GeneDB CDS_parts 399368 400684 . - . mRNA SPBC106.11c ; systematic_id "SPBC106.11c" ; colour "2" ; gene "plg7 ||| SPBC106.11c" ; Alias "plg7" ; db_xref "KEGG:MAP00561; ||| SPD:22/22H09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human PAF-AH/PLA2-G7 ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18489912; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009395; phospholipid catabolic process
GO:0003847; 1-alkyl-2-acetylglycerophosphocholine esterase activity
GO:0034599; cellular response to oxidative stress" ; primary_name "plg7" ; product "phospholipase A2, PAF family homolog" ; EC_number "3.1.1.47" ;
chromosome2 GeneDB CDS 399368 400684 . - . mRNA SPBC106.11c ; colour "2" ;
chromosome2 GeneDB misc_feature 399368 416658 . + . misc_feature unknown_193 ; note "contiguous region containing 9 genes which could not be deleted during the pilot gene deletion project PMID:12618370; meiotic recombination frequency was normal between two flanking markers, so it does no appear to be a cold spot" ;
chromosome2 GeneDB CDS_parts 401165 402349 . - . mRNA SPBC106.12c ; db_xref "SPD:18/18G12" ; systematic_id "SPBC106.12c" ; colour "7" ; GO "GO:0000347; THO complex
GO:0003723; RNA binding
GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0006406; mRNA export from nucleus
GO:0006397; mRNA processing
GO:0034243; regulation of RNA elongation from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC106.12c" ; product "THO complex subunit (predicted)" ;
chromosome2 GeneDB CDS 401165 401683 . - . mRNA SPBC106.12c ; colour "7" ;
chromosome2 GeneDB CDS 401844 401910 . - . mRNA SPBC106.12c ; colour "7" ;
chromosome2 GeneDB CDS 402017 402141 . - . mRNA SPBC106.12c ; colour "7" ;
chromosome2 GeneDB CDS 402195 402263 . - . mRNA SPBC106.12c ; colour "7" ;
chromosome2 GeneDB CDS 402305 402349 . - . mRNA SPBC106.12c ; colour "7" ;
chromosome2 GeneDB misc_feature 401684 401699 . - . misc_feature unknown_194 ; colour "6" ; note "ctaaccttttcttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 401838 401843 . - . misc_feature unknown_195 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 401911 401928 . - . misc_feature unknown_196 ; colour "6" ; note "ctaacacagcaatcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 402011 402016 . - . misc_feature unknown_197 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 402142 402161 . - . misc_feature unknown_198 ; colour "6" ; note "ctaattttttactttttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 402189 402194 . - . misc_feature unknown_199 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 402264 402276 . - . misc_feature unknown_200 ; colour "6" ; note "ttaacaatcctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 402299 402304 . - . misc_feature unknown_201 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 402556 402695 . + . mRNA SPBC106.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.13" ; systematic_id "SPBC106.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 402696 404022 . + . mRNA SPBC106.13 ; db_xref "SPD:23/23A11" ; systematic_id "SPBC106.13" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0045721; negative regulation of gluconeogenesis
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0034657; GID complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CTLH domain; date=19700101 ||| term=orthologous to S. cerevisiae YIL097W; date=19700101 ||| term=human MAEA ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC106.13" ; product "ubiquitin ligase complex subunit, involved in proteasome-dependent catabolite inactivation of FBPase (predicted)" ;
chromosome2 GeneDB CDS 402696 402923 . + . mRNA SPBC106.13 ; colour "7" ;
chromosome2 GeneDB CDS 402986 403507 . + . mRNA SPBC106.13 ; colour "7" ;
chromosome2 GeneDB CDS 403558 404022 . + . mRNA SPBC106.13 ; colour "7" ;
chromosome2 GeneDB misc_feature 402924 402929 . + . misc_feature unknown_202 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 402965 402985 . + . misc_feature unknown_203 ; colour "6" ; note "cttacatggttctttgtgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 403508 403513 . + . misc_feature unknown_204 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 403546 403557 . + . misc_feature unknown_205 ; colour "6" ; note "ctgacaaattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 404099 404261 . - . mRNA SPBC106.14c ; ID "SPBC106.14c" ; systematic_id "SPBC106.14c" ; note "mRNA from AU013235" ;
chromosome2 GeneDB CDS_parts 404262 406421 . - . mRNA SPBC106.14c ; systematic_id "SPBC106.14c" ; colour "7" ; gene "sda1 ||| SPBC106.14c" ; Alias "sda1" ; db_xref "SPD:37/37F12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR245C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SDAD1 ortholog; date=20100909" ; GO "GO:0005634; nucleus
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0042255; ribosome assembly
GO:0007089; traversing start control point of mitotic cell cycle" ; primary_name "sda1" ; product "SDA1 family protein (predicted)" ; reserved_name "sda1" ;
chromosome2 GeneDB CDS 404262 406421 . - . mRNA SPBC106.14c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 406420 406626 . - . mRNA SPBC106.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.14c" ; systematic_id "SPBC106.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 406846 406873 . + . mRNA SPBC106.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.15" ; systematic_id "SPBC106.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 406874 407677 . + . mRNA SPBC106.15 ; systematic_id "SPBC106.15" ; colour "2" ; gene "idi1 ||| SPBC106.15" ; Alias "idi1" ; db_xref "SPD:10/10C01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL117C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004452; isopentenyl-diphosphate delta- isomerase activity
GO:0006696; ergosterol biosynthesis
GO:0005829; cytosol" ; primary_name "idi1" ; product "isopentenyl-diphosphate delta-isomerase Idi1" ; EC_number "5.3.3.2" ;
chromosome2 GeneDB CDS 406874 406991 . + . mRNA SPBC106.15 ; colour "2" ;
chromosome2 GeneDB CDS 407056 407394 . + . mRNA SPBC106.15 ; colour "2" ;
chromosome2 GeneDB CDS 407451 407677 . + . mRNA SPBC106.15 ; colour "2" ;
chromosome2 GeneDB misc_feature 406992 406997 . + . misc_feature unknown_206 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 406992 407055 . + . intron SPBC106.15 ; systematic_id "SPBC106.15" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 407040 407055 . + . misc_feature unknown_207 ; colour "6" ; note "ctaacaagccttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 407395 407400 . + . misc_feature unknown_208 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 407395 407450 . + . intron SPBC106.15 ; systematic_id "SPBC106.15" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 407435 407450 . + . misc_feature unknown_209 ; colour "6" ; note "ctaacggacattctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 407678 407908 . + . mRNA SPBC106.15 ; ID "SPBC106.15" ; systematic_id "SPBC106.15" ; note "mRNA from SP21154" ;
chromosome2 GeneDB 5'-UTR 409487 409495 . + . mRNA SPBC106.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.16" ; systematic_id "SPBC106.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 409496 410453 . + . mRNA SPBC106.16 ; systematic_id "SPBC106.16" ; colour "2" ; gene "pre6 ||| SPBC106.16" ; Alias "pre6" ; db_xref "SPD:13/13E11" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL038W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pre6" ; product "20S proteasome component alpha 4 Pre6" ; EC_number "3.4.25.1" ;
chromosome2 GeneDB CDS 409496 409594 . + . mRNA SPBC106.16 ; colour "2" ;
chromosome2 GeneDB CDS 409655 410028 . + . mRNA SPBC106.16 ; colour "2" ;
chromosome2 GeneDB CDS 410147 410453 . + . mRNA SPBC106.16 ; colour "2" ;
chromosome2 GeneDB misc_feature 409595 409600 . + . misc_feature unknown_210 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 409635 409654 . + . misc_feature unknown_211 ; colour "6" ; note "cttacatatatcattaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 410029 410034 . + . misc_feature unknown_212 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 410131 410146 . + . misc_feature unknown_213 ; colour "6" ; note "ttaacaaagaatatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 410454 410640 . + . mRNA SPBC106.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.16" ; systematic_id "SPBC106.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 410807 411119 . - . mRNA SPBC106.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.17c" ; systematic_id "SPBC106.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 411120 412634 . - . mRNA SPBC106.17c ; systematic_id "SPBC106.17c" ; colour "2" ; gene "cys2 ||| SPBC106.17c" ; note "appears to be a gene loss in S. cerevisiae, their is no syntenic ortholog of the Ashbya protein AEL098W in S. cerevisiae" ; Alias "cys2" ; db_xref "SPD:44/44H01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, growth auxotrophic for cysteine; db_xref=PMID:17622533; date=20100812 ||| term=abhydrolase family; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=experimental tools, selectable marker, amino acid auxotroph; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0019344; cysteine biosynthetic process
GO:0004414; homoserine O-acetyltransferase activity
GO:0005737; cytoplasm" ; primary_name "cys2" ; product "homoserine O-acetyltransferase (predicted)" ; EC_number "2.3.1.-" ;
chromosome2 GeneDB CDS 411120 412634 . - . mRNA SPBC106.17c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 412633 412676 . - . mRNA SPBC106.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.17c" ; systematic_id "SPBC106.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 413556 414221 . + . mRNA SPBC106.18 ; systematic_id "SPBC106.18" ; colour "7" ; gene "rpl2501 ||| rpl25a ||| SPBC106.18" ; Alias "rpl2501" ; db_xref "SPD:31/31G08" ; synonym "rpl25a" ; GO "GO:0019843; rRNA binding
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0000027; ribosomal large subunit assembly
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL127W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "rpl2501" ; product "60S ribosomal protein L25 (predicted)" ;
chromosome2 GeneDB CDS 413556 413653 . + . mRNA SPBC106.18 ; colour "7" ;
chromosome2 GeneDB CDS 413894 414221 . + . mRNA SPBC106.18 ; colour "7" ;
chromosome2 GeneDB misc_feature 413654 413659 . + . misc_feature unknown_214 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 413654 413893 . + . intron SPBC106.18 ; systematic_id "SPBC106.18" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 413875 413893 . + . misc_feature unknown_215 ; colour "6" ; note "ctaacttatatctttatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 414222 414271 . + . mRNA SPBC106.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.18" ; systematic_id "SPBC106.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 414933 415110 . + . mRNA SPBC106.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.19" ; systematic_id "SPBC106.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 415111 416658 . + . mRNA SPBC106.19 ; db_xref "SPD:44/44H12" ; systematic_id "SPBC106.19" ; synonym "SPBC582.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 415111 416658 . + . mRNA SPBC106.19 ; colour "8" ;
chromosome2 GeneDB misc_feature 415992 418187 . + . misc_feature unknown_216 ; note "nominal overlap between cosmid SPBC106 and cosmid SPBC582" ;
chromosome2 GeneDB 3'-UTR 416659 416965 . + . mRNA SPBC106.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.19" ; systematic_id "SPBC106.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 417242 417318 . + . mRNA SPBC106.20 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.20" ; systematic_id "SPBC106.20" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 417319 419476 . + . mRNA SPBC106.20 ; systematic_id "SPBC106.20" ; colour "2" ; gene "exo70 ||| SPBC106.20 ||| SPBC582.02" ; Alias "exo70" ; db_xref "SPD:37/37F08" ; synonym "SPBC582.02" ; GO "GO:0000145; exocyst
GO:0006887; exocytosis
GO:0006886; intracellular protein transport
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0051285; cell cortex of cell tip
GO:0032153; cell division site" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YJL085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "exo70" ; product "exocyst complex subunit Exo70 (predicted)" ;
chromosome2 GeneDB CDS 417319 417320 . + . mRNA SPBC106.20 ; colour "2" ;
chromosome2 GeneDB CDS 417371 417399 . + . mRNA SPBC106.20 ; colour "2" ;
chromosome2 GeneDB CDS 417460 417618 . + . mRNA SPBC106.20 ; colour "2" ;
chromosome2 GeneDB CDS 417665 419219 . + . mRNA SPBC106.20 ; colour "2" ;
chromosome2 GeneDB CDS 419273 419309 . + . mRNA SPBC106.20 ; colour "2" ;
chromosome2 GeneDB CDS 419411 419476 . + . mRNA SPBC106.20 ; colour "2" ;
chromosome2 GeneDB misc_feature 417321 417326 . + . misc_feature unknown_217 ; colour "6" ; note "gtatct, splice donor sequence" ;
chromosome2 GeneDB misc_feature 417358 417370 . + . misc_feature unknown_218 ; colour "6" ; note "ctaactggtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 417400 417405 . + . misc_feature unknown_219 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 417442 417459 . + . misc_feature unknown_220 ; colour "6" ; note "ctaattaaatcgttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 417619 417624 . + . misc_feature unknown_221 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 417651 417664 . + . misc_feature unknown_222 ; colour "6" ; note "ctaatttgtttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 419220 419225 . + . misc_feature unknown_223 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 419258 419272 . + . misc_feature unknown_224 ; colour "6" ; note "ctaacctctgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 419310 419315 . + . misc_feature unknown_225 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 419395 419410 . + . misc_feature unknown_226 ; colour "6" ; note "cttactcattacgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 419477 419551 . + . mRNA SPBC106.20 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC106.20" ; systematic_id "SPBC106.20" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 421123 422571 . + . mRNA SPBC582.03 ; systematic_id "SPBC582.03" ; colour "2" ; gene "cdc13 ||| SPBC582.03" ; Alias "cdc13" ; db_xref "SPD:23/23D02" ; GO "GO:0005634; nucleus
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0034613; cellular protein localization
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0070317; negative regulation of G1 to G0 transition
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=deletion; date=20100730 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YGR108W and YPR119W; date=19700101 ||| term=protein sequence feature, destruction box; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=B-type cyclin; date=20090629" ; primary_name "cdc13" ; product "G2/M B-type cyclin Cdc13" ;
chromosome2 GeneDB CDS 421123 422571 . + . mRNA SPBC582.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 422572 423181 . + . mRNA SPBC582.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC582.03" ; systematic_id "SPBC582.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 423269 425446 . - . mRNA SPBC582.04c ; db_xref "SPD:46/46F04" ; systematic_id "SPBC582.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090414 ||| term=species distribution, conserved in Eukaryotes; date=20090414 ||| term=species distribution, conserved in Fungi only; date=20090414 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090414" ; colour "10" ; gene "SPBC582.04c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 423269 423598 . - . mRNA SPBC582.04c ; colour "10" ;
chromosome2 GeneDB CDS 423669 423738 . - . mRNA SPBC582.04c ; colour "10" ;
chromosome2 GeneDB CDS 423782 423871 . - . mRNA SPBC582.04c ; colour "10" ;
chromosome2 GeneDB CDS 423912 424373 . - . mRNA SPBC582.04c ; colour "10" ;
chromosome2 GeneDB CDS 424424 424692 . - . mRNA SPBC582.04c ; colour "10" ;
chromosome2 GeneDB CDS 424747 424872 . - . mRNA SPBC582.04c ; colour "10" ;
chromosome2 GeneDB CDS 424921 425160 . - . mRNA SPBC582.04c ; colour "10" ;
chromosome2 GeneDB CDS 425223 425350 . - . mRNA SPBC582.04c ; colour "10" ;
chromosome2 GeneDB CDS 425410 425446 . - . mRNA SPBC582.04c ; colour "10" ;
chromosome2 GeneDB misc_feature 423599 423608 . - . misc_feature unknown_227 ; colour "6" ; note "ctaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 423663 423668 . - . misc_feature unknown_228 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 423739 423750 . - . misc_feature unknown_229 ; colour "6" ; note "ctgaccataaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 423776 423781 . - . misc_feature unknown_230 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 423872 423886 . - . misc_feature unknown_231 ; colour "6" ; note "ctaacactcttgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 423906 423911 . - . misc_feature unknown_232 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 424374 424388 . - . misc_feature unknown_233 ; colour "6" ; note "ttgacataactatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 424418 424423 . - . misc_feature unknown_234 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 424873 424886 . - . misc_feature unknown_235 ; colour "6" ; note "ttgacgattattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 424915 424920 . - . misc_feature unknown_236 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 425161 425183 . - . misc_feature unknown_237 ; colour "6" ; note "ctaattagcatatattactacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 425217 425222 . - . misc_feature unknown_238 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 425351 425373 . - . misc_feature unknown_239 ; colour "6" ; note "ctaatatattgcttttcacctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 425404 425409 . - . misc_feature unknown_240 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 426160 429013 . - . mRNA SPBC582.05c ; systematic_id "SPBC582.05c" ; colour "2" ; gene "brc1 ||| SPBC582.05c" ; db_xref "SPD:47/47C11" ; Alias "brc1" ; GO "GO:0005634; nucleus
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0000018; regulation of DNA recombination
GO:0006301; postreplication repair" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:15972456; date=20100727 ||| term=BRCT domain; date=19700101 ||| term=orthologous to S. cerevisiae YHR154W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "brc1" ; product "BRCT domain protein Brc1" ;
chromosome2 GeneDB CDS 426160 428547 . - . mRNA SPBC582.05c ; colour "2" ;
chromosome2 GeneDB CDS 428634 428771 . - . mRNA SPBC582.05c ; colour "2" ;
chromosome2 GeneDB CDS 428903 429013 . - . mRNA SPBC582.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 428548 428561 . - . misc_feature unknown_241 ; colour "6" ; note "ctaactgtcgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 428628 428633 . - . misc_feature unknown_242 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 428772 428789 . - . misc_feature unknown_243 ; colour "6" ; note "ctgactttgtttacctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 428897 428902 . - . misc_feature unknown_244 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 429183 430166 . - . mRNA SPBC582.06c ; systematic_id "SPBC582.06c" ; colour "2" ; gene "mcp6 ||| hrs1 ||| SPBC582.06c ||| mug3" ; Alias "mcp6" ; db_xref "SPD:14/14C04" ; synonym "hrs1 ||| mug3" ; GO "GO:0032117; horsetail-astral microtubule array
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005816; spindle pole body
GO:0042802; identical protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030953; astral microtubule organization and biogenesis
GO:0034613; cellular protein localization
GO:0030989; horsetail nuclear movement
GO:0032118; horsetail-astral microtubule organization and biogenesis
GO:0007131; meiotic recombination
GO:0007097; nuclear migration
GO:0007129; synapsis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=20060517 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:15654021; date=20060517 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=20060517 ||| term=name description, horsetail movement protein Hrs1; cv=name_description; db_xref=PMID:16111942; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=20090727" ; primary_name "mcp6" ; product "horsetail movement protein Hrs1/Mcp6" ;
chromosome2 GeneDB CDS 429183 430166 . - . mRNA SPBC582.06c ; colour "2" ;
chromosome2 GeneDB CDS_parts 430551 431780 . - . mRNA SPBC582.07c ; systematic_id "SPBC582.07c" ; colour "2" ; gene "rpn7 ||| SPBC582.07c" ; Alias "rpn7" ; db_xref "SPD:19/19E12" ; GO "GO:0031595; nuclear proteasome complex
GO:0000502; proteasome complex (sensu Eukaryota)
GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0043248; proteasome assembly
GO:0031144; proteasome localization
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17761670; date=20070903 ||| term=orthologous to S. cerevisiae YPR108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpn7" ; product "19S proteasome regulatory subunit Rpn7" ;
chromosome2 GeneDB CDS 430551 431780 . - . mRNA SPBC582.07c ; colour "2" ;
chromosome2 GeneDB intron 431822 431888 . - . intron unknown_245 ;
chromosome2 GeneDB CDS_parts 432550 434311 . + . mRNA SPBC582.08 ; db_xref "SPD:36/36B08" ; systematic_id "SPBC582.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YDR111C and YLR089C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0004021; alanine transaminase activity
GO:0042851; L-alanine metabolism
GO:0006537; glutamate biosynthesis" ; gene "SPBC582.08" ; product "alanine aminotransferase (predicted)" ; EC_number "2.6.1.2" ;
chromosome2 GeneDB CDS 432550 433012 . + . mRNA SPBC582.08 ; colour "7" ;
chromosome2 GeneDB CDS 433204 434003 . + . mRNA SPBC582.08 ; colour "7" ;
chromosome2 GeneDB CDS 434057 434311 . + . mRNA SPBC582.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 433013 433018 . + . misc_feature unknown_246 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 433189 433203 . + . misc_feature unknown_247 ; colour "6" ; note "ctaattatattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 434004 434009 . + . misc_feature unknown_248 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 434039 434056 . + . misc_feature unknown_249 ; colour "6" ; note "ctaattcatattttcaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 434312 434455 . + . mRNA SPBC582.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC582.08" ; systematic_id "SPBC582.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 434811 434872 . + . mRNA SPBC582.09 ; ID "SPBC582.09" ; systematic_id "SPBC582.09" ; note "mRNA from AU009201" ;
chromosome2 GeneDB CDS_parts 434873 435973 . + . mRNA SPBC582.09 ; systematic_id "SPBC582.09" ; colour "7" ; gene "pex11 ||| SPBC582.09" ; Alias "pex11" ; db_xref "SPD:17/17C06" ; GO "GO:0007031; peroxisome organization and biogenesis
GO:0005778; peroxisomal membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL147C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pex11" ; product "peroxisomal biogenesis factor 11 (predicted)" ;
chromosome2 GeneDB CDS 434873 434917 . + . mRNA SPBC582.09 ; colour "7" ;
chromosome2 GeneDB CDS 434962 434991 . + . mRNA SPBC582.09 ; colour "7" ;
chromosome2 GeneDB CDS 435283 435761 . + . mRNA SPBC582.09 ; colour "7" ;
chromosome2 GeneDB CDS 435811 435973 . + . mRNA SPBC582.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 434918 434923 . + . misc_feature unknown_250 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB intron 434918 434961 . + . intron SPBC582.09 ; systematic_id "SPBC582.09" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 434933 434961 . + . misc_feature unknown_251 ; colour "6" ; note "ttgattgcatggtttataacattttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 434992 434997 . + . misc_feature unknown_252 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 434992 435282 . + . intron SPBC582.09 ; systematic_id "SPBC582.09" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 435268 435282 . + . misc_feature unknown_253 ; colour "6" ; note "ctaattatgcgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 435762 435767 . + . misc_feature unknown_254 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 435762 435810 . + . intron SPBC582.09 ; systematic_id "SPBC582.09" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 435793 435810 . + . misc_feature unknown_255 ; colour "6" ; note "ctaaccacatttgtgcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 435974 436051 . + . mRNA SPBC582.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC582.09" ; systematic_id "SPBC582.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 436160 436232 . - . mRNA SPBC582.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC582.10c" ; systematic_id "SPBC582.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 436233 438777 . - . mRNA SPBC582.10c ; db_xref "SPD:29/29C11" ; systematic_id "SPBC582.10c" ; colour "7" ; GO "GO:0006289; nucleotide-excision repair
GO:0000113; nucleotide-excision repair factor 4 complex
GO:0008094; DNA-dependent ATPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YBR114W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC582.10c" ; product "ATP-dependent DNA helicase Rhp16b (predicted)" ;
chromosome2 GeneDB CDS 436233 437936 . - . mRNA SPBC582.10c ; colour "7" ;
chromosome2 GeneDB CDS 437989 438777 . - . mRNA SPBC582.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 437937 437952 . - . misc_feature unknown_256 ; colour "6" ; note "ctaataatttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 437983 437988 . - . misc_feature unknown_257 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 438776 438856 . - . mRNA SPBC582.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC582.10c" ; systematic_id "SPBC582.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 439188 439273 . - . mRNA SPBC428.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.01c" ; systematic_id "SPBC428.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 439274 441975 . - . mRNA SPBC428.01c ; systematic_id "SPBC428.01c" ; colour "2" ; gene "nup107 ||| SPBC582.11c ||| SPBC428.01c" ; Alias "nup107" ; db_xref "SPD:38/38H03" ; synonym "SPBC582.11c" ; GO "GO:0031080; Nup107-160 complex
; nuclear membrane
GO:0005643; nuclear pore
GO:0005643; nuclear pore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006913; nucleocytoplasmic transport
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YDL116W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20031117" ; primary_name "nup107" ; product "nucleoporin Nup107" ;
chromosome2 GeneDB CDS 439274 441187 . - . mRNA SPBC428.01c ; colour "2" ;
chromosome2 GeneDB CDS 441229 441337 . - . mRNA SPBC428.01c ; colour "2" ;
chromosome2 GeneDB CDS 441392 441484 . - . mRNA SPBC428.01c ; colour "2" ;
chromosome2 GeneDB CDS 441541 441667 . - . mRNA SPBC428.01c ; colour "2" ;
chromosome2 GeneDB CDS 441718 441751 . - . mRNA SPBC428.01c ; colour "2" ;
chromosome2 GeneDB CDS 441793 441840 . - . mRNA SPBC428.01c ; colour "2" ;
chromosome2 GeneDB CDS 441916 441975 . - . mRNA SPBC428.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 440775 443990 . + . misc_feature unknown_258 ; note "nominal overlap between cosmid SPBC428 and cosmid SPBC582" ;
chromosome2 GeneDB misc_feature 441188 441201 . - . misc_feature unknown_259 ; colour "6" ; note "ttaatattctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 441223 441228 . - . misc_feature unknown_260 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 441338 441354 . - . misc_feature unknown_261 ; colour "6" ; note "ttaacaacttttactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 441386 441391 . - . misc_feature unknown_262 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 441485 441497 . - . misc_feature unknown_263 ; colour "6" ; note "ttaacataaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 441535 441540 . - . misc_feature unknown_264 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 441668 441682 . - . misc_feature unknown_265 ; colour "6" ; note "ctaactatggtacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 441712 441717 . - . misc_feature unknown_266 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 441752 441763 . - . misc_feature unknown_267 ; colour "6" ; note "ttaaccatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 441787 441792 . - . misc_feature unknown_268 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 441833 441853 . - . misc_feature unknown_269 ; colour "6" ; note "ctaacatacgaagagttctag, splice branch and acceptor" ;
chromosome2 GeneDB intron 441841 441915 . - . intron SPBC428.01c ; systematic_id "SPBC428.01c" ; note "confirmed (pers. comm. Valerie Doye)" ;
chromosome2 GeneDB misc_feature 441910 441915 . - . misc_feature unknown_270 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 441974 441992 . - . mRNA SPBC428.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.01c" ; systematic_id "SPBC428.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 442344 442630 . - . mRNA SPBC428.02c ; ID "SPBC428.02c" ; systematic_id "SPBC428.02c" ; note "mRNA from AU011040" ;
chromosome2 GeneDB CDS_parts 442631 443773 . - . mRNA SPBC428.02c ; systematic_id "SPBC428.02c" ; colour "2" ; gene "eca39 ||| SPBC582.12c ||| SPBC428.02c" ; Alias "eca39" ; db_xref "SPD:18/18A10" ; synonym "SPBC582.12c" ; GO "GO:0004084; branched-chain-amino-acid transaminase activity
GO:0009097; isoleucine biosynthesis
GO:0009098; leucine biosynthesis
GO:0009099; valine biosynthesis
GO:0005759; mitochondrial matrix
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0030170; pyridoxal phosphate binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YHR208W and YJR148W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "eca39" ; product "branched chain amino acid aminotransferase Eca39" ; EC_number "2.6.1.42" ;
chromosome2 GeneDB CDS 442631 443773 . - . mRNA SPBC428.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 443774 443945 . - . mRNA SPBC428.02c ; ID "SPBC428.02c" ; systematic_id "SPBC428.02c" ; note "mRNA from AU007459" ;
chromosome2 GeneDB 3'-UTR 445403 445416 . - . mRNA SPBC428.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.03c" ; systematic_id "SPBC428.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 445417 446808 . - . mRNA SPBC428.03c ; systematic_id "SPBC428.03c" ; colour "2" ; gene "pho4 ||| SPBC428.03c" ; Alias "pho4" ; db_xref "SPD:21/21E07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, repressed by thiamine; cv=gene_ex; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YAR071W and YHR215W and YDL024C and YBR093C and YBR092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; GO "GO:0005576; extracellular region
GO:0009277; cell wall (sensu Fungi)
GO:0030287; periplasmic space (sensu Fungi)
GO:0003993; acid phosphatase activity
GO:0009897; external side of plasma membrane" ; primary_name "pho4" ; product "thiamine-repressible acid phosphatase Pho4" ; EC_number "3.1.3.2" ;
chromosome2 GeneDB CDS 445417 446808 . - . mRNA SPBC428.03c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 446807 447105 . - . mRNA SPBC428.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.03c" ; systematic_id "SPBC428.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 448866 448933 . + . mRNA SPBC428.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.04" ; systematic_id "SPBC428.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 448934 449281 . + . mRNA SPBC428.04 ; systematic_id "SPBC428.04" ; colour "7" ; gene "SPBC428.04" ; db_xref "SPD:02/02B09" ; Alias "apq12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL040W; date=20091223 ||| term=species distribution, conserved in Fungi; date=20091223 ||| term=species distribution, conserved in Fungi only; date=20091223 ||| term=species distribution, conserved in Eukaryotes; date=20091223" ; GO "GO:0005788; endoplasmic reticulum
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0005635; nuclear envelope
GO:0010256; endomembrane organization
GO:0006998; nuclear envelope organization
GO:0044255; cellular lipid metabolic process" ; primary_name "apq12" ; product "nuclear membrane organization protein Apq12 (predicted)" ;
chromosome2 GeneDB CDS 448934 449281 . + . mRNA SPBC428.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 449282 449306 . + . mRNA SPBC428.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.04" ; systematic_id "SPBC428.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 449635 449770 . - . mRNA SPBC428.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.05c" ; systematic_id "SPBC428.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 449771 451003 . - . mRNA SPBC428.05c ; systematic_id "SPBC428.05c" ; colour "2" ; gene "arg12 ||| SPBC428.05c" ; Alias "arg12" ; db_xref "SPD:19/19F08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, argininemia; date=20060725 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YOL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004055; argininosuccinate synthase activity
GO:0006526; arginine biosynthesis
GO:0000053; argininosuccinate metabolism
GO:0005829; cytosol
GO:0004055; argininosuccinate synthase activity
GO:0006526; arginine biosynthesis
GO:0000050; urea cycle" ; primary_name "arg12" ; product "argininosuccinate synthase (predicted)" ; EC_number "6.3.4.5" ;
chromosome2 GeneDB CDS 449771 451003 . - . mRNA SPBC428.05c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 451002 451012 . - . mRNA SPBC428.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.05c" ; systematic_id "SPBC428.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 451562 451988 . - . mRNA SPBC428.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.06c" ; systematic_id "SPBC428.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 451989 453039 . - . mRNA SPBC428.06c ; systematic_id "SPBC428.06c" ; colour "2" ; gene "rxt2 ||| SPBC428.06c" ; db_xref "SPD:16/16A09" ; Alias "rxt2" ; GO "GO:0000747; conjugation with cellular fusion
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0016575; histone deacetylation
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR095C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rxt2" ; product "histone deacetylase complex subunit Rxt2" ;
chromosome2 GeneDB CDS 451989 452416 . - . mRNA SPBC428.06c ; colour "2" ;
chromosome2 GeneDB CDS 452597 452705 . - . mRNA SPBC428.06c ; colour "2" ;
chromosome2 GeneDB CDS 452749 452879 . - . mRNA SPBC428.06c ; colour "2" ;
chromosome2 GeneDB CDS 452930 452964 . - . mRNA SPBC428.06c ; colour "2" ;
chromosome2 GeneDB CDS 453014 453039 . - . mRNA SPBC428.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 452417 452437 . - . misc_feature unknown_271 ; colour "6" ; note "ctaactcagtaaaaattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 452591 452596 . - . misc_feature unknown_272 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 452706 452723 . - . misc_feature unknown_273 ; colour "6" ; note "ctaaccactactttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 452743 452748 . - . misc_feature unknown_274 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 452880 452895 . - . misc_feature unknown_275 ; colour "6" ; note "ctaacatctcgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 452924 452929 . - . misc_feature unknown_276 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 452965 452977 . - . misc_feature unknown_277 ; colour "6" ; note "ctaacaaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 453008 453013 . - . misc_feature unknown_278 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 453038 453045 . - . mRNA SPBC428.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.06c" ; systematic_id "SPBC428.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 454230 456312 . + . mRNA SPBC428.07 ; systematic_id "SPBC428.07" ; colour "2" ; db_xref "SPD:27/27G05" ; Alias "meu6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, NLS; cv=sequence_feature; qualifier=predicted; db_xref=PMID:11376151; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=name description, Meiotic Expression Upregulated; db_xref=PMID:11376151; cv=name_description; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20080908" ; GO "GO:0045132; meiotic chromosome segregation
GO:0007126; meiosis" ; primary_name "meu6" ; product "meiotic chromosome segregation protein Meu6" ;
chromosome2 GeneDB CDS 454230 454597 . + . mRNA SPBC428.07 ; colour "2" ;
chromosome2 GeneDB CDS 454668 454944 . + . mRNA SPBC428.07 ; colour "2" ;
chromosome2 GeneDB CDS 455002 456312 . + . mRNA SPBC428.07 ; colour "2" ;
chromosome2 GeneDB misc_feature 454598 454603 . + . misc_feature unknown_279 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 454654 454667 . + . misc_feature unknown_280 ; colour "6" ; note "ctaaccacatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 454945 454950 . + . misc_feature unknown_281 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 454986 455001 . + . misc_feature unknown_282 ; colour "6" ; note "ctaactgtattttcag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 456575 458047 . - . mRNA SPBC428.08c ; systematic_id "SPBC428.08c" ; colour "2" ; gene "clr4 ||| SPBC428.08c" ; Alias "clr4" ; db_xref "SPD:23/23G02" ; GO "GO:0043494; Rik1-E3 ubiquitin ligase complex
GO:0031934; mating-type region heterochromatin
GO:0031618; nuclear centric heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0046974; histone lysine N-methyltransferase activity (H3-K9 specific)
GO:0005515; protein binding
GO:0090065; regulation of RNA interference, production of siRNA
GO:0051315; attachment of spindle microtubules to kinetochore during mitosis
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0007535; donor selection
GO:0051567; histone H3 K9 methylation
GO:0030989; horsetail nuclear movement
GO:0045141; telomere clustering
GO:0030148; chromatin silencing by small RNA
GO:0032015; regulation of Ran protein signal transduction
GO:0031507; heterochromatin formation" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=chromodomain protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, accumulation of non- coding outer repeat transcripts; cv=phenotype; date=20100318 ||| term=name description, Cryptic Loci Regulator; date=20100727 ||| term=human SUV39H1 and SUV39H2 ortholog; date=20100908" ; primary_name "clr4" ; product "histone H3 methyltransferase Clr4" ;
chromosome2 GeneDB CDS 456575 458047 . - . mRNA SPBC428.08c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 458046 458382 . - . mRNA SPBC428.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.08c" ; systematic_id "SPBC428.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 458478 458824 . + . LTR unknown_283 ; colour "4" ; note "lone tf1-type LTR" ;
chromosome2 GeneDB misc_RNA 459469 459925 . - . misc_RNA SPNCRNA.534 ; db_xref "PMID:18488015" ; synonym "SPNGAF44" ; systematic_id "SPNCRNA.534" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 67 amino acids" ;
chromosome2 GeneDB 5'-UTR 460856 461305 . + . mRNA SPBC428.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.10" ; systematic_id "SPBC428.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 461306 463561 . + . mRNA SPBC428.10 ; db_xref "SPD:38/38B03" ; systematic_id "SPBC428.10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC428.10" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 461306 463561 . + . mRNA SPBC428.10 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 463562 463825 . + . mRNA SPBC428.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.10" ; systematic_id "SPBC428.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 464238 464309 . + . tRNA SPBTRNAHIS.01 ; systematic_id "SPBTRNAHIS.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033452; GTG codon-amino acid adaptor activity" ; gene "SPBTRNAHIS.01" ; product "tRNA Histidine" ; note "tRNA His anticodon GTG" ;
chromosome2 GeneDB rRNA 464527 464645 . + . rRNA SPRRNA.28 ; systematic_id "SPRRNA.28" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.28" ; product "5S rRNA" ;
chromosome2 GeneDB 5'-UTR 465533 465632 . + . mRNA SPBC428.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.11" ; systematic_id "SPBC428.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 465633 466922 . + . mRNA SPBC428.11 ; systematic_id "SPBC428.11" ; colour "2" ; gene "met17 ||| SPBC428.11" ; note "name from PMID:18808426" ; Alias "met17" ; db_xref "SPD:22/22D02" ; synonym "met17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YLR303W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0003961; O-acetylhomoserine aminocarboxypropyltransferase activity
GO:0019344; cysteine biosynthetic process
GO:0006555; methionine metabolic process
GO:0004124; cysteine synthase activity" ; primary_name "met17" ; product "homocysteine synthase Met17" ; EC_number "2.5.1.49" ;
chromosome2 GeneDB CDS 465633 466922 . + . mRNA SPBC428.11 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 466923 467125 . + . mRNA SPBC428.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.11" ; systematic_id "SPBC428.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snRNA 467025 467823 . - . snRNA SPSNRNA.04 ; systematic_id "SPSNRNA.04" ; gene "snu4 ||| SPSNRNA.04 ||| prp13" ; db_xref "RFAM:RF00015" ; Alias "snu4" ; synonym "prp13" ; controlled_curation "term=phenotype, chromosome segregation defects; allele=prp13-1; db_xref=PMID:20018856; cv=phenotype; date=20100630 ||| term=phenotype, cell morphology, elongated cells; allele=prp13-1; db_xref=PMID:20018856; cv=phenotype; date=20100630 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; allele=prp13-1; db_xref=PMID:20018856; cv=phenotype; date=20100630 ||| term=phenotype, sensitive to TBZ; allele=prp13-1; db_xref=PMID:20018856; cv=phenotype; date=20100630" ; GO "GO:0000070; chromosome segregation defects, lagging chromosomes
GO:0031508; centromeric heterochromatin formation
GO:0000245; spliceosome assembly
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "snu4" ; product "small nuclear RNA U4" ;
chromosome2 GeneDB 3'-UTR 467841 468133 . - . mRNA SPBC428.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.12c" ; systematic_id "SPBC428.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 468134 468829 . - . mRNA SPBC428.12c ; db_xref "SPD:08/08B06" ; systematic_id "SPBC428.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; colour "10" ; gene "SPBC428.12c" ; product "RNA-binding protein" ;
chromosome2 GeneDB CDS 468134 468198 . - . mRNA SPBC428.12c ; colour "10" ;
chromosome2 GeneDB CDS 468260 468418 . - . mRNA SPBC428.12c ; colour "10" ;
chromosome2 GeneDB CDS 468514 468609 . - . mRNA SPBC428.12c ; colour "10" ;
chromosome2 GeneDB CDS 468799 468829 . - . mRNA SPBC428.12c ; colour "10" ;
chromosome2 GeneDB misc_feature 468199 468211 . - . misc_feature unknown_284 ; colour "6" ; note "ctaatttacgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 468254 468259 . - . misc_feature unknown_285 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 468419 468430 . - . misc_feature unknown_286 ; colour "6" ; note "ctaactttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 468508 468513 . - . misc_feature unknown_287 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome2 GeneDB misc_feature 468610 468625 . - . misc_feature unknown_288 ; colour "6" ; note "ctaactttctttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 468793 468798 . - . misc_feature unknown_289 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 469388 470125 . - . mRNA SPBC428.13c ; systematic_id "SPBC428.13c" ; colour "2" ; gene "mob1 ||| SPBC428.13c" ; Alias "mob1" ; db_xref "SPD:43/43A08" ; GO "GO:0034973; Sid2-Mob1 complex
GO:0031097; medial ring
; spindle pole body
GO:0005515; protein binding
GO:0019887; protein kinase regulator activity
GO:0045859; regulation of protein kinase activity
GO:0034613; cellular protein localization
GO:0031031; positive regulation of septation initiation signaling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10769201; date=19700101 ||| term=orthologous to S. cerevisiae YIL106W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10769201; date=20100709" ; primary_name "mob1" ; product "Sid2-Mob1 kinase complex regulatory subunit Mob1" ;
chromosome2 GeneDB CDS 469388 469445 . - . mRNA SPBC428.13c ; colour "2" ;
chromosome2 GeneDB CDS 469494 469893 . - . mRNA SPBC428.13c ; colour "2" ;
chromosome2 GeneDB CDS 469951 470125 . - . mRNA SPBC428.13c ; colour "2" ;
chromosome2 GeneDB misc_feature 469446 469462 . - . misc_feature unknown_290 ; colour "6" ; note "ttaacaacaaatttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 469488 469493 . - . misc_feature unknown_291 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 469894 469911 . - . misc_feature unknown_292 ; colour "6" ; note "ttaattgaatacttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 469945 469950 . - . misc_feature unknown_293 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 470124 470150 . - . mRNA SPBC428.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.13c" ; systematic_id "SPBC428.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 470371 470651 . + . mRNA SPBC428.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.14" ; systematic_id "SPBC428.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 470652 471704 . + . mRNA SPBC428.14 ; db_xref "SPD:16/16A11" ; systematic_id "SPBC428.14" ; colour "7" ; GO "GO:0008654; phospholipid biosynthesis
GO:0008415; acyltransferase activity
GO:0016411; acylglycerol O-acyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YBR042C and YDR018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC428.14" ; product "1-acylglycerol-3-phosphate acyltransferase (predicted)" ;
chromosome2 GeneDB CDS 470652 471704 . + . mRNA SPBC428.14 ; colour "7" ;
chromosome2 GeneDB CDS_parts 472210 473439 . + . mRNA SPBC428.15 ; db_xref "SPD:19/19F01" ; systematic_id "SPBC428.15" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0016887; ATPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=orthologous to S. cerevisiae YGR210C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human OLA1 ortholog; date=20100621" ; gene "SPBC428.15" ; product "Obg-like ATPase (predicted)" ;
chromosome2 GeneDB CDS 472210 473439 . + . mRNA SPBC428.15 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 473440 473450 . + . mRNA SPBC428.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.15" ; systematic_id "SPBC428.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 473670 473826 . - . mRNA SPBC428.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.16c" ; systematic_id "SPBC428.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 473827 474497 . - . mRNA SPBC428.16c ; systematic_id "SPBC428.16c" ; colour "2" ; gene "rhb1 ||| SPBC428.16c" ; Alias "rhb1" ; db_xref "SPD:07/07F12" ; GO "GO:0019003; GDP binding
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005515; protein binding
GO:0010963; regulation of L-arginine import
GO:0010963; regulation of L-arginine import
GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0007165; signal transduction
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10835385; date=19700101 ||| term=gene expression, constitutive; cv=gene_ex; db_xref=PMID:10835385; date=19700101 ||| term=orthologous to S. cerevisiae YCR027C; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rhb1" ; product "Rheb GTPase Rhb1" ;
chromosome2 GeneDB CDS 473827 474063 . - . mRNA SPBC428.16c ; colour "2" ;
chromosome2 GeneDB CDS 474118 474376 . - . mRNA SPBC428.16c ; colour "2" ;
chromosome2 GeneDB CDS 474436 474497 . - . mRNA SPBC428.16c ; colour "2" ;
chromosome2 GeneDB misc_feature 474064 474083 . - . misc_feature unknown_294 ; colour "6" ; note "ctaacctacttgctattaag, splice branch and acceptor" ;
chromosome2 GeneDB intron 474064 474117 . - . intron SPBC428.16c ; systematic_id "SPBC428.16c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 474112 474117 . - . misc_feature unknown_295 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 474377 474397 . - . misc_feature unknown_296 ; colour "6" ; note "ctaaccattttttttaaatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 474377 474435 . - . intron SPBC428.16c ; systematic_id "SPBC428.16c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 474430 474435 . - . misc_feature unknown_297 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 474498 474573 . - . mRNA SPBC428.16c ; ID "SPBC428.16c" ; systematic_id "SPBC428.16c" ; note "mRNA from AU014560" ;
chromosome2 GeneDB CDS_parts 474627 476520 . - . mRNA SPBC428.17c ; systematic_id "SPBC428.17c" ; colour "2" ; gene "SPBC428.17c ||| wpl1" ; Alias "wpl1" ; db_xref "SPD:26/26E06" ; GO "GO:0005634; nucleus
GO:0034183; negative regulation of maintenance of mitotic sister chromatid cohesion
GO:0071923; regulation of cohesin localization to chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR014W; date=19700101 ||| term=; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human WAPAL ortholog; date=20100928" ; primary_name "wpl1" ; product "Wings apart-like homolog Wpl1" ;
chromosome2 GeneDB CDS 474627 474881 . - . mRNA SPBC428.17c ; colour "2" ;
chromosome2 GeneDB CDS 474927 474979 . - . mRNA SPBC428.17c ; colour "2" ;
chromosome2 GeneDB CDS 475020 476520 . - . mRNA SPBC428.17c ; colour "2" ;
chromosome2 GeneDB misc_feature 474882 474894 . - . misc_feature unknown_298 ; colour "6" ; note "ctaacaaatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 474921 474926 . - . misc_feature unknown_299 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 474980 474993 . - . misc_feature unknown_300 ; colour "6" ; note "ctaattctatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 475014 475019 . - . misc_feature unknown_301 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 476519 476697 . - . mRNA SPBC428.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.17c" ; systematic_id "SPBC428.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 477189 477364 . + . mRNA SPBC428.18 ; ID "SPBC428.18" ; systematic_id "SPBC428.18" ; note "mRNA from SPCDT1MR" ;
chromosome2 GeneDB CDS_parts 477365 478699 . + . mRNA SPBC428.18 ; systematic_id "SPBC428.18" ; colour "2" ; gene "cdt1 ||| SPBC428.18" ; Alias "cdt1" ; db_xref "SPD:20/20F09" ; GO "GO:0005656; pre-replicative complex
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0006267; pre-replicative complex assembly
GO:0030174; regulation of DNA replication initiation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8313888; date=19700101 ||| term=orthologous to S. cerevisiae YJR046W; date=19700101 ||| term=gene expression, expressed during G1-S phase; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cdt1" ; product "replication licensing factor Cdt1" ;
chromosome2 GeneDB CDS 477365 478699 . + . mRNA SPBC428.18 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 478700 478738 . + . mRNA SPBC428.18 ; ID "SPBC428.18" ; systematic_id "SPBC428.18" ; note "mRNA from SPCDT1MR" ;
chromosome2 GeneDB 3'-UTR 478913 479202 . - . mRNA SPBC428.19c ; ID "SPBC428.19c" ; systematic_id "SPBC428.19c" ; note "mRNA from AU008004" ;
chromosome2 GeneDB CDS_parts 479203 480896 . - . mRNA SPBC428.19c ; db_xref "SPD:35/35C09" ; systematic_id "SPBC428.19c" ; colour "7" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YMR093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; gene "SPBC428.19c" ; product "U3 snoRNP protein Utp15 (predicted)" ;
chromosome2 GeneDB CDS 479203 480369 . - . mRNA SPBC428.19c ; colour "7" ;
chromosome2 GeneDB CDS 480579 480896 . - . mRNA SPBC428.19c ; colour "7" ;
chromosome2 GeneDB misc_feature 480370 480385 . - . misc_feature unknown_302 ; colour "6" ; note "ctaatgtactttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 480573 480578 . - . misc_feature unknown_303 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 480895 480930 . - . mRNA SPBC428.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.19c" ; systematic_id "SPBC428.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 481076 483706 . - . mRNA SPBC428.20c ; systematic_id "SPBC428.20c" ; colour "2" ; gene "alp6 ||| SPBC428.20c ||| SPBC902.01c" ; Alias "alp6" ; db_xref "SPD:38/38G01" ; synonym "SPBC902.01c" ; GO "GO:0000216; M/G1 transition of mitotic cell cycle
GO:0000930; gamma-tubulin complex
GO:0005816; spindle pole body
GO:0000923; equatorial microtubule organizing center
GO:0007094; mitotic spindle checkpoint
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0090307; spindle assembly involved in mitosis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0007020; microtubule nucleation
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, microtubule organization defects, long microtubules; qualifier=ts; db_xref=PMID:11080156; date=20100907 ||| term=phenotype, cut; qualifier=ts|conditional|in_presence_of_TBC; db_xref=PMID:11080156; date=20100907 ||| term=phenotype, spindle defects, monopolar spindle; qualifier=ts; db_xref=PMID:11080156; date=20100907 ||| term=orthologous to S. cerevisiae YNL126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "alp6" ; product "gamma tubulin complex Spc98/GCP3 subunit Alp6" ;
chromosome2 GeneDB CDS 481076 481552 . - . mRNA SPBC428.20c ; colour "2" ;
chromosome2 GeneDB CDS 481639 483437 . - . mRNA SPBC428.20c ; colour "2" ;
chromosome2 GeneDB CDS 483478 483539 . - . mRNA SPBC428.20c ; colour "2" ;
chromosome2 GeneDB CDS 483579 483706 . - . mRNA SPBC428.20c ; colour "2" ;
chromosome2 GeneDB misc_feature 481553 481569 . - . misc_feature unknown_304 ; colour "6" ; note "ctaaccattggaaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 481633 481638 . - . misc_feature unknown_305 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 481928 482029 . + . misc_feature unknown_306 ; note "nominal overlap between cosmid SPBC428 and cosmid SPBC902" ;
chromosome2 GeneDB 5'-UTR 483690 483790 . - . mRNA SPBC428.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC428.20c" ; systematic_id "SPBC428.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 483949 486960 . - . mRNA SPBC902.02c ; systematic_id "SPBC902.02c" ; colour "2" ; gene "ctf18 ||| chl12 ||| SPBC902.02c" ; note "Ctf18 RFC-like complex is required in the absence of Rfc1 (PMID 16040599)" ; Alias "ctf18" ; db_xref "SPD:47/47G03" ; synonym "chl12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; qualifier=predicted; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YMR078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031390; Ctf18 RFC-like complex
GO:0003689; DNA clamp loader activity
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0045132; meiotic chromosome segregation
GO:0007062; sister chromatid cohesion
GO:0031390; nuclear replication fork" ; primary_name "ctf18" ; product "RFC-like complex subunit Ctf18" ;
chromosome2 GeneDB CDS 483949 484312 . - . mRNA SPBC902.02c ; colour "2" ;
chromosome2 GeneDB CDS 484362 484492 . - . mRNA SPBC902.02c ; colour "2" ;
chromosome2 GeneDB CDS 484573 486960 . - . mRNA SPBC902.02c ; colour "2" ;
chromosome2 GeneDB misc_feature 484313 484325 . - . misc_feature unknown_307 ; colour "6" ; note "ctaacgttgacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 484356 484361 . - . misc_feature unknown_308 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 484493 484506 . - . misc_feature unknown_309 ; colour "6" ; note "ctaactttttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 484567 484572 . - . misc_feature unknown_310 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 486959 486980 . - . mRNA SPBC902.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC902.02c" ; systematic_id "SPBC902.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 487382 487504 . + . misc_RNA SPNCRNA.307 ; db_xref "PMID:18488015" ; synonym "SPNG1211" ; systematic_id "SPNCRNA.307" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 487971 488229 . + . mRNA SPBC902.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC902.03" ; systematic_id "SPBC902.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 488230 488772 . + . mRNA SPBC902.03 ; db_xref "SPD:05/05E05" ; systematic_id "SPBC902.03" ; colour "7" ; GO "GO:0030437; ascospore formation
GO:0007126; meiosis
GO:0006998; nuclear envelope organization
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0008287; Nem1-Spo7 complex
GO:0071071; regulation of cellular phospholipid biosynthetic process
GO:0019888; protein phosphatase regulator activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YAL009W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC902.03" ; product "Nem1-Spo7 complex regulatory subunit Spo7 (predicted)" ;
chromosome2 GeneDB CDS 488230 488772 . + . mRNA SPBC902.03 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 488773 489401 . + . mRNA SPBC902.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC902.03" ; systematic_id "SPBC902.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 489882 491833 . + . mRNA SPBC902.04 ; db_xref "SPD:46/46B12" ; systematic_id "SPBC902.04" ; colour "10" ; GO "GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RBMS6 ortholog; date=20091004" ; gene "SPBC902.04" ; product "RNA-binding protein" ;
chromosome2 GeneDB CDS 489882 489911 . + . mRNA SPBC902.04 ; colour "10" ;
chromosome2 GeneDB CDS 489950 489987 . + . mRNA SPBC902.04 ; colour "10" ;
chromosome2 GeneDB CDS 490078 491620 . + . mRNA SPBC902.04 ; colour "10" ;
chromosome2 GeneDB CDS 491675 491833 . + . mRNA SPBC902.04 ; colour "10" ;
chromosome2 GeneDB misc_feature 489912 489917 . + . misc_feature unknown_311 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 489937 489949 . + . misc_feature unknown_312 ; colour "6" ; note "ttaacgcttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 489988 489993 . + . misc_feature unknown_313 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 490062 490077 . + . misc_feature unknown_314 ; colour "6" ; note "ctaacgaaatgactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 491621 491626 . + . misc_feature unknown_315 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 491661 491674 . + . misc_feature unknown_316 ; colour "6" ; note "ttaacaaattttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 491834 492151 . + . mRNA SPBC902.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC902.04" ; systematic_id "SPBC902.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 491987 492161 . - . mRNA SPBC902.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC902.05c" ; systematic_id "SPBC902.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 492162 493655 . - . mRNA SPBC902.05c ; systematic_id "SPBC902.05c" ; colour "2" ; gene "idh2 ||| glu2 ||| SPBC902.05c" ; Alias "idh2" ; db_xref "KEGG:MAP00020; ||| SPD:24/24B05" ; synonym "glu2" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006102; isocitrate metabolism
GO:0006537; glutamate biosynthesis
GO:0004449; isocitrate dehydrogenase (NAD+) activity
GO:0005759; mitochondrial matrix" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YOR136W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "idh2" ; product "isocitrate dehydrogenase (NAD+) subunit 2" ; EC_number "1.1.1.41" ;
chromosome2 GeneDB CDS 492162 492268 . - . mRNA SPBC902.05c ; colour "2" ;
chromosome2 GeneDB CDS 492319 493083 . - . mRNA SPBC902.05c ; colour "2" ;
chromosome2 GeneDB CDS 493238 493286 . - . mRNA SPBC902.05c ; colour "2" ;
chromosome2 GeneDB CDS 493334 493477 . - . mRNA SPBC902.05c ; colour "2" ;
chromosome2 GeneDB CDS 493584 493655 . - . mRNA SPBC902.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 492269 492282 . - . misc_feature unknown_317 ; colour "6" ; note "ctaattaccattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 492313 492318 . - . misc_feature unknown_318 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 493084 493096 . - . misc_feature unknown_319 ; colour "6" ; note "ctaattcgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 493232 493237 . - . misc_feature unknown_320 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 493287 493305 . - . misc_feature unknown_321 ; colour "6" ; note "ttaacgacttgtattgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 493328 493333 . - . misc_feature unknown_322 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 493478 493499 . - . misc_feature unknown_323 ; colour "6" ; note "ttaacagagttatttttagcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 493578 493583 . - . misc_feature unknown_324 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 494681 494741 . + . mRNA SPBC902.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC902.06" ; systematic_id "SPBC902.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 494742 495935 . + . mRNA SPBC902.06 ; systematic_id "SPBC902.06" ; colour "2" ; gene "mto2 ||| SPBC902.06" ; db_xref "SPD:19/19A09" ; Alias "mto2" ; GO "GO:0000923; equatorial microtubule organizing center
GO:0031021; interphase microtubule organizing center
GO:0015630; microtubule cytoskeleton
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031122; cytoplasmic microtubule organization
GO:0040023; establishment of nucleus localization
GO:0033566; gamma-tubulin complex localization
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center
GO:0032189; maintenance of contractile ring localization
GO:0010968; regulation of microtubule nucleation
GO:0043015; gamma-tubulin binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mto2" ; product "MT organizer Mto2" ;
chromosome2 GeneDB CDS 494742 495935 . + . mRNA SPBC902.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 495936 496387 . + . mRNA SPBC902.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC902.06" ; systematic_id "SPBC902.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 496277 496377 . + . misc_feature unknown_325 ; note "nominal overlap between cosmid SPBC1685 and cosmid SPBC902" ;
chromosome2 GeneDB 5'-UTR 496550 496812 . + . mRNA SPBC1685.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.01" ; systematic_id "SPBC1685.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 496813 497649 . + . mRNA SPBC1685.01 ; systematic_id "SPBC1685.01" ; colour "2" ; gene "pmp1 ||| SPBC1685.01" ; Alias "pmp1" ; db_xref "SPD:10/10H08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YIL113W and YNL053W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0005737; cytoplasm
GO:0017017; MAP kinase phosphatase activity
GO:0005515; protein binding
GO:0006470; protein amino acid dephosphorylation
GO:0010969; regulation of pheromone-dependent signal transduction involved in conjugation with cellualr fusion" ; primary_name "pmp1" ; product "dual-specificity MAP kinase phosphatase Pmp1" ; EC_number "3.1.3.48" ;
chromosome2 GeneDB CDS 496813 497649 . + . mRNA SPBC1685.01 ; colour "2" ;
chromosome2 GeneDB misc_RNA 496923 497897 . - . misc_RNA SPNCRNA.565 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.565" ; synonym "SPNG2A43" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB 3'-UTR 498476 498486 . - . mRNA SPBC1685.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.02c" ; systematic_id "SPBC1685.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 498487 498990 . - . mRNA SPBC1685.02c ; systematic_id "SPBC1685.02c" ; colour "7" ; gene "rps1202 ||| rps12-2 ||| SPBC1685.02c" ; Alias "rps1202" ; db_xref "SPD:31/31E05" ; synonym "rps12-2" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YOR369C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1202" ; product "40S ribosomal protein S12 (predicted)" ;
chromosome2 GeneDB CDS 498487 498543 . - . mRNA SPBC1685.02c ; colour "7" ;
chromosome2 GeneDB CDS 498601 498990 . - . mRNA SPBC1685.02c ; colour "7" ;
chromosome2 GeneDB misc_feature 498544 498559 . - . misc_feature unknown_326 ; colour "6" ; note "ctaacttattttttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 498544 498600 . - . intron SPBC1685.02c ; systematic_id "SPBC1685.02c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 498595 498600 . - . misc_feature unknown_327 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 498989 499026 . - . mRNA SPBC1685.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.02c" ; systematic_id "SPBC1685.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 499374 500161 . + . mRNA SPBC1685.03 ; systematic_id "SPBC1685.03" ; colour "7" ; gene "sec11 ||| SPBC1685.03" ; Alias "sec11" ; db_xref "SPD:09/09H03" ; GO "GO:0005787; signal peptidase complex
; peptidase activity
GO:0045047; protein targeting to ER
GO:0006465; signal peptide processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YIR022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec11" ; product "signal peptidase subunit Sec11 (predicted)" ;
chromosome2 GeneDB CDS 499374 499397 . + . mRNA SPBC1685.03 ; colour "7" ;
chromosome2 GeneDB CDS 499556 499869 . + . mRNA SPBC1685.03 ; colour "7" ;
chromosome2 GeneDB CDS 499930 500161 . + . mRNA SPBC1685.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 499398 499403 . + . misc_feature unknown_328 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 499537 499555 . + . misc_feature unknown_329 ; colour "6" ; note "ctaacgtgtaaatttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 499870 499875 . + . misc_feature unknown_330 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 499916 499929 . + . misc_feature unknown_331 ; colour "6" ; note "ctaacttgaatcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 500162 500512 . + . mRNA SPBC1685.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.03" ; systematic_id "SPBC1685.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 501166 501471 . + . misc_RNA SPNCRNA.308 ; db_xref "PMID:18488015" ; synonym "SPNG1214" ; systematic_id "SPNCRNA.308" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 501281 501694 . + . mRNA SPBC1685.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.16" ; systematic_id "SPBC1685.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 501695 501862 . + . mRNA SPBC1685.16 ; systematic_id "SPBC1685.16" ; colour "7" ; gene "SPBC1685.16 ||| vma9" ; note "found in directed search for VMA9 ortholog, possibly still missing a bit at the N-term July 18th 2004" ; Alias "vma9" ; db_xref "SPD:51/51B04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL005W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000220; hydrogen-transporting ATPase V0 domain
GO:0000329; vacuolar membrane
GO:0007035; vacuolar acidification
GO:0042625; ATPase activity, coupled to transmembrane movement of ions
GO:0015991; ATP hydrolysis coupled proton transport
GO:0046961; hydrogen ion transporting ATPase activity, rotational mechanism" ; primary_name "vma9" ; product "V-type ATPase V0 subunit e (predicted)" ;
chromosome2 GeneDB CDS 501695 501735 . + . mRNA SPBC1685.16 ; colour "7" ;
chromosome2 GeneDB CDS 501802 501862 . + . mRNA SPBC1685.16 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 501863 502380 . + . mRNA SPBC1685.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.16" ; systematic_id "SPBC1685.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 502711 502872 . + . mRNA SPBC1685.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.04" ; systematic_id "SPBC1685.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 502873 503850 . + . mRNA SPBC1685.04 ; db_xref "SPD:14/14A07" ; systematic_id "SPBC1685.04" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC1685.04" ; product "sequence orphan" ; note "possibly related to human TNFAIP3 interacting protein 1" ;
chromosome2 GeneDB CDS 502873 503850 . + . mRNA SPBC1685.04 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 503851 504031 . + . mRNA SPBC1685.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.04" ; systematic_id "SPBC1685.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 505923 508916 . + . mRNA SPBC1685.05 ; db_xref "SPD:47/47F09" ; systematic_id "SPBC1685.05" ; colour "10" ; GO "GO:0004252; serine-type endopeptidase activity
GO:0006508; proteolysis
GO:0051603; proteolysis involved in cellular protein catabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=PDZ domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPBC1685.05" ; product "serine protease (predicted)" ;
chromosome2 GeneDB CDS 505923 508916 . + . mRNA SPBC1685.05 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 508917 508981 . + . mRNA SPBC1685.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.05" ; systematic_id "SPBC1685.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 509502 510984 . + . mRNA SPBC1685.06 ; systematic_id "SPBC1685.06" ; colour "2" ; gene "cid11 ||| SPBC1685.06" ; Alias "cid11" ; db_xref "SPD:23/23H08" ; GO "GO:0004652; polynucleotide adenylyltransferase activity" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to caffeine; qualifier=deletion; cv=phenotype; date=20060220 ||| term=phenotype, sensitive to HU; qualifier=deletion; cv=phenotype; date=20060220 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; cv=phenotype; date=20090715" ; primary_name "cid11" ; product "poly(A) polymerase Cid11 (predicted)" ;
chromosome2 GeneDB CDS 509502 509895 . + . mRNA SPBC1685.06 ; colour "2" ;
chromosome2 GeneDB CDS 509942 510984 . + . mRNA SPBC1685.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 509896 509901 . + . misc_feature unknown_332 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 509927 509941 . + . misc_feature unknown_333 ; colour "6" ; note "ctaaccaggaaacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 509972 511203 . - . mRNA SPBC1685.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.07c" ; systematic_id "SPBC1685.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 511204 512466 . - . mRNA SPBC1685.07c ; systematic_id "SPBC1685.07c" ; colour "2" ; gene "SPBC1685.07c" ; Alias "avt5" ; obsolete_name "avt8" ; db_xref "SPD:20/20B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YER119C and YBL089W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sporulation defects; qualifier=triple_mutant; allele=SPAC3H1.09|SPBC16H5.07|SPAC2G11. 13|leucine_auxotroph; db_xref=PMID:19778961; date=20091126" ; GO "GO:0005290; L-histidine transmembrane transporter activity
GO:0005302; L-tyrosine transmembrane transporter activity
GO:0005313; L-glutamate transmembrane transporter activity
GO:0015181; arginine transmembrane transporter activity
GO:0015189; L-lysine transmembrane transporter activity
GO:0006995; cellular response to nitrogen starvation
GO:0000329; fungal type vacuolar membrane
GO:0071627; integral to fungal-type vacuolar membrane
GO:0032975; amino acid import into vacuole" ; primary_name "avt5" ; product "vacuolar amino acid efflux transporter Avt5" ;
chromosome2 GeneDB CDS 511204 512466 . - . mRNA SPBC1685.07c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 512465 512831 . - . mRNA SPBC1685.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.07c" ; systematic_id "SPBC1685.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 514207 514215 . + . mRNA SPBC1685.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.08" ; systematic_id "SPBC1685.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 514216 515704 . + . mRNA SPBC1685.08 ; systematic_id "SPBC1685.08" ; colour "2" ; gene "SPBC1685.08 ||| cti6" ; Alias "cti6" ; db_xref "SPD:24/24A06" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008134; transcription factor binding
GO:0016575; histone deacetylation
GO:0006355; regulation of transcription, DNA- dependent
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded
GO:0019787; small conjugating protein ligase activity
GO:0006338; chromatin remodeling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YPL181W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cti6" ; product "histone deacetylase complex subunit Cti6" ;
chromosome2 GeneDB CDS 514216 514553 . + . mRNA SPBC1685.08 ; colour "2" ;
chromosome2 GeneDB CDS 514724 514927 . + . mRNA SPBC1685.08 ; colour "2" ;
chromosome2 GeneDB CDS 514972 515704 . + . mRNA SPBC1685.08 ; colour "2" ;
chromosome2 GeneDB misc_feature 514554 514559 . + . misc_feature unknown_334 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 514709 514723 . + . misc_feature unknown_335 ; colour "6" ; note "ctaacttcgccgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 514928 514933 . + . misc_feature unknown_336 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 514958 514971 . + . misc_feature unknown_337 ; colour "6" ; note "ctaactgtttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 515705 515910 . + . mRNA SPBC1685.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.08" ; systematic_id "SPBC1685.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 516442 516735 . + . mRNA SPBC1685.09 ; systematic_id "SPBC1685.09" ; colour "7" ; gene "rps29 ||| SPBC1685.09" ; Alias "rps29" ; db_xref "SPD:31/31C04" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YLR388W and YDL061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps29" ; product "40S ribosomal protein S29 (predicted)" ;
chromosome2 GeneDB CDS 516442 516503 . + . mRNA SPBC1685.09 ; colour "7" ;
chromosome2 GeneDB CDS 516555 516654 . + . mRNA SPBC1685.09 ; colour "7" ;
chromosome2 GeneDB CDS 516727 516735 . + . mRNA SPBC1685.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 516504 516509 . + . misc_feature unknown_338 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 516539 516554 . + . misc_feature unknown_339 ; colour "6" ; note "ttaattcataatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 516655 516660 . + . misc_feature unknown_340 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB intron 516655 516726 . + . intron SPBC1685.09 ; systematic_id "SPBC1685.09" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 516714 516726 . + . misc_feature unknown_341 ; colour "6" ; note "ttaactagtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 516736 516790 . + . mRNA SPBC1685.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.09" ; systematic_id "SPBC1685.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 517344 517837 . + . mRNA SPBC1685.10 ; systematic_id "SPBC1685.10" ; colour "7" ; gene "rps27 ||| SPBC1685.10" ; Alias "rps27" ; db_xref "SPD:04/04G04" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL156W and YHR021c; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps27" ; product "40S ribosomal protein S27 (predicted)" ;
chromosome2 GeneDB CDS 517344 517349 . + . mRNA SPBC1685.10 ; colour "7" ;
chromosome2 GeneDB CDS 517388 517480 . + . mRNA SPBC1685.10 ; colour "7" ;
chromosome2 GeneDB CDS 517685 517837 . + . mRNA SPBC1685.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 517350 517355 . + . misc_feature unknown_342 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 517376 517387 . + . misc_feature unknown_343 ; colour "6" ; note "ctaacaaagtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 517481 517486 . + . misc_feature unknown_344 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 517481 517684 . + . intron SPBC1685.10 ; systematic_id "SPBC1685.10" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 517669 517684 . + . misc_feature unknown_345 ; colour "6" ; note "ctaactattttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 517838 517893 . + . mRNA SPBC1685.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.10" ; systematic_id "SPBC1685.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 518167 518371 . + . mRNA SPBC1685.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.11" ; systematic_id "SPBC1685.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 518372 519463 . + . mRNA SPBC1685.11 ; systematic_id "SPBC1685.11" ; colour "2" ; db_xref "SPD:17/17B02" ; Alias "rlp1" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031297; collapsed replication fork processing
GO:0007131; meiotic recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000725; recombinational repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RecA family; db_xref=PMID:14668362; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human XRCC2 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rlp1" ; product "RecA family ATPase Rlp1" ;
chromosome2 GeneDB CDS 518372 519463 . + . mRNA SPBC1685.11 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 519464 519543 . + . mRNA SPBC1685.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.11" ; systematic_id "SPBC1685.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB rRNA 520254 520494 . + . rRNA SPRRNA.29 ; systematic_id "SPRRNA.29" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.29" ; product "5S rRNA" ;
chromosome2 GeneDB misc_feature 520494 526091 . + . misc_feature unknown_346 ; note "gene-free region" ;
chromosome2 GeneDB misc_feature 521665 523357 . + . misc_feature unknown_347 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1223" ;
chromosome2 GeneDB CDS_parts 523887 524240 . - . mRNA SPBC1685.12c ; db_xref "SPD:02/02C11" ; systematic_id "SPBC1685.12c" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPBC1685.12c" ; product "dubious" ;
chromosome2 GeneDB CDS 523887 524240 . - . mRNA SPBC1685.12c ; colour "6" ;
chromosome2 GeneDB 5'-UTR 525537 526090 . + . mRNA SPBC1685.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.13" ; systematic_id "SPBC1685.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 526091 526642 . + . mRNA SPBC1685.13 ; systematic_id "SPBC1685.13" ; colour "2" ; gene "SPBC1685.13 ||| fnh1" ; Alias "fhn1" ; db_xref "SPD:05/05F07" ; GO "GO:0009306; intracellular protein transport
GO:0005668; plasma membrane
GO: SF check SGD; membrane raft, MCC domain
GO:0007009; plasma membrane organization
GO:0090002; establishment of protein localization in membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YPR149W and YGR131W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Fungi only; date=20100123 ||| term=name description, Functional Homologue of Nce102; db_xref=PMID:20581291; date=20100630 ||| term=complementation, functionally complements S. cerevisiae NCE102; db_xref=PMID:20581291; date=20100630" ; primary_name "fhn1" ; product "Fhn1 plasma membrane organization protein" ;
chromosome2 GeneDB CDS 526091 526642 . + . mRNA SPBC1685.13 ; colour "2" ;
chromosome2 GeneDB misc_feature 526842 527098 . - . misc_feature unknown_348 ; note "gt repeat region similar to human/mouse repeated reg ion" ;
chromosome2 GeneDB misc_RNA 527043 528366 . + . misc_RNA SPNCRNA.133 ; db_xref "EMBL:AU007212 ||| EMBL:AU011804" ; systematic_id "SPNCRNA.133" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU012817; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU012817; date=20050412" ; product "non-coding RNA (predicted)" ; note "RNA from AU011804 and AU007212" ;
chromosome2 GeneDB misc_RNA 527680 528304 . - . misc_RNA SPNCRNA.134 ; db_xref "EMBL:AU007844 ||| EMBL:AU008659" ; systematic_id "SPNCRNA.134" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU012817; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU012817; date=20050412" ; product "non-coding RNA (predicted)" ; note "RNA from AU007844 and AU008659" ;
chromosome2 GeneDB 3'-UTR 529002 529452 . - . mRNA SPBC1685.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.14c" ; systematic_id "SPBC1685.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 529453 531979 . - . mRNA SPBC1685.14c ; db_xref "SPD:29/29C04" ; systematic_id "SPBC1685.14c" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YNL212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC1685.14c" ; product "Vid27 family protein" ;
chromosome2 GeneDB CDS 529453 531742 . - . mRNA SPBC1685.14c ; colour "10" ;
chromosome2 GeneDB CDS 531812 531904 . - . mRNA SPBC1685.14c ; colour "10" ;
chromosome2 GeneDB CDS 531957 531979 . - . mRNA SPBC1685.14c ; colour "10" ;
chromosome2 GeneDB misc_feature 531743 531757 . - . misc_feature unknown_349 ; colour "6" ; note "ctaacgattgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 531806 531811 . - . misc_feature unknown_350 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 531905 531920 . - . misc_feature unknown_351 ; colour "6" ; note "ctaacttaagatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 531951 531956 . - . misc_feature unknown_352 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 531978 532028 . - . mRNA SPBC1685.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.14c" ; systematic_id "SPBC1685.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 532247 532696 . - . mRNA SPBC1685.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1685.15c" ; systematic_id "SPBC1685.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 532674 533662 . + . misc_feature unknown_353 ; note "nominal overlap between cosmid c649 and cosmid c1685" ;
chromosome2 GeneDB CDS_parts 532697 535091 . - . mRNA SPBC1685.15c ; systematic_id "SPBC1685.15c" ; colour "2" ; gene "klp6 ||| SPBC1685.15c ||| SPBC649.01c ||| sot2" ; Alias "klp6" ; db_xref "SPD:28/28E12" ; synonym "sot2 ||| SPBC649.01c" ; GO "GO:0003777; microtubule motor activity
GO:0000070; mitotic sister chromatid segregation
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0005816; spindle pole body
GO:0015630; microtubule cytoskeleton
GO:0000915; cytokinesis, contractile ring formation
GO:0007126; meiosis
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0031113; regulation of microtubule polymerization
GO:0031114; regulation of microtubule depolymerization
GO:0000778; kinetochore
GO:0051233; spindle midzone
GO:0008574; plus-end-directed microtubule motor activity
GO:0005873; plus-end kinesin complex
GO:0070507; regulation of microtubule cytoskeleton organization
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0034504; cellular protein localization to nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=Kip3 subfamily; date=19700101 ||| term=pathway, Ras1-Scd; cv=pathway; db_xref=PMID:11739790; date=19700101 ||| term=orthologous to S. cerevisiae YGL216W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=kinesin-8 family; date=20090316 ||| term=protein sequence feature, NLS; cv=sequence_feature; db_xref=PMID:18799626; date=20090316 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:18799626; cv=localization; date=20090316 ||| term=localization, klp5 and klp6 are interdependent for mitotic nuclear localization; db_xref=PMID:18799626; cv=localization; date=20090316 ||| term=localization, klp5 and klp6 enter the nucleus separately; db_xref=PMID:18799626; cv=localization; date=20090316 ||| term=phenotype, chromosome segregation defects, chromosome congression; qualifier=deletion; cv=phenotype; db_xref=PMID:18799626; date=20090316 ||| term=phenotype, cytoskeletal defect, long cytoplasmic microtubules; qualifier=deletion; cv=phenotype; db_xref=PMID:18799626; date=20090316 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201 ||| term=phenotype, resistance to TBZ; db_xref=PMID:11739790; cv=phenotype; date=20100216 ||| term=phenotype, resistance to microtubule depolymerizing drugs; db_xref=PMID:11739790; cv=phenotype; date=20100216" ; primary_name "klp6" ; product "kinesin-like protein Klp6" ;
chromosome2 GeneDB CDS 532697 535020 . - . mRNA SPBC1685.15c ; colour "2" ;
chromosome2 GeneDB CDS 535061 535091 . - . mRNA SPBC1685.15c ; colour "2" ;
chromosome2 GeneDB misc_feature 535021 535032 . - . misc_feature unknown_354 ; colour "6" ; note "ctgaccatcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 535055 535060 . - . misc_feature unknown_355 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 535092 535263 . - . mRNA SPBC1685.15c ; ID "SPBC1685.15c" ; systematic_id "SPBC1685.15c" ; note "mRNA from AU011213" ;
chromosome2 GeneDB CDS_parts 535383 535987 . + . mRNA SPBC649.02 ; systematic_id "SPBC649.02" ; colour "7" ; gene "rps1902 ||| rps19-2 ||| rps19 ||| SPBC649.02" ; Alias "rps1902" ; db_xref "SPD:31/31F07" ; synonym "rps19-2 ||| rps19" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL121C and YNL302C; date=19700101 ||| term=disease associated, Diamond Blackfan Anemia; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1902" ; product "40S ribosomal protein S19 (predicted)" ;
chromosome2 GeneDB CDS 535383 535458 . + . mRNA SPBC649.02 ; colour "7" ;
chromosome2 GeneDB CDS 535632 535987 . + . mRNA SPBC649.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 535459 535464 . + . misc_feature unknown_356 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB intron 535459 535631 . + . intron SPBC649.02 ; systematic_id "SPBC649.02" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 535617 535631 . + . misc_feature unknown_357 ; colour "6" ; note "ctaactgatccgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 535988 536041 . + . mRNA SPBC649.02 ; ID "SPBC649.02" ; systematic_id "SPBC649.02" ; note "mRNA from AU007084" ;
chromosome2 GeneDB 5'-UTR 536757 536984 . + . mRNA SPBC649.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC649.03" ; systematic_id "SPBC649.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 536985 537854 . + . mRNA SPBC649.03 ; systematic_id "SPBC649.03" ; colour "2" ; gene "rhp14 ||| SPBC649.03" ; Alias "rhp14" ; db_xref "SPD:11/11G03" ; GO "GO:0006289; nucleotide-excision repair
GO:0000109; nucleotide-excision repair complex
GO:0000715; nucleotide-excision repair, DNA damage recognition
GO:0003684; damaged DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YMR201C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human XPA ortholog; date=20100217" ; primary_name "rhp14" ; product "XP-A family homolog Rhp14" ;
chromosome2 GeneDB CDS 536985 537854 . + . mRNA SPBC649.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 537855 537910 . + . mRNA SPBC649.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC649.03" ; systematic_id "SPBC649.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 539396 539417 . + . mRNA SPBC649.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC649.04" ; systematic_id "SPBC649.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 539418 539960 . + . mRNA SPBC649.04 ; systematic_id "SPBC649.04" ; colour "2" ; db_xref "SPD:39/39H08" ; Alias "uvi15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, growth defect, required for stationary phase; db_xref=PMID:7898433; cv=phenotype; date=20091009 ||| term=phenotype, growth defect, required during nutrient depletion; db_xref=PMID:7898433; cv=phenotype; date=20091009 ||| term=orthologous to S. cerevisiae YDL012C and YDR210W and YBR016W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0034605; cellular response to heat
GO:0006974; response to DNA damage stimulus
GO:0031670; cellular response to nutrient
GO:0070317; negative regulation of G0 to G1 transition" ; primary_name "uvi15" ; product "UV-induced protein Uvi15" ;
chromosome2 GeneDB CDS 539418 539453 . + . mRNA SPBC649.04 ; colour "2" ;
chromosome2 GeneDB CDS 539523 539704 . + . mRNA SPBC649.04 ; colour "2" ;
chromosome2 GeneDB CDS 539915 539960 . + . mRNA SPBC649.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 539454 539459 . + . misc_feature unknown_358 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB intron 539454 539522 . + . intron SPBC649.04 ; systematic_id "SPBC649.04" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 539504 539522 . + . misc_feature unknown_359 ; colour "6" ; note "ctaacagcttcaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 539705 539710 . + . misc_feature unknown_360 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 539705 539914 . + . intron SPBC649.04 ; systematic_id "SPBC649.04" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 539898 539914 . + . misc_feature unknown_361 ; colour "6" ; note "ctaacgactgtttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 539961 540117 . + . mRNA SPBC649.04 ; ID "SPBC649.04" ; systematic_id "SPBC649.04" ; GO "GO:0005515; protein binding" ; note "mRNA from AU006902" ;
chromosome2 GeneDB 5'-UTR 541265 541282 . + . mRNA SPBC649.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC649.05" ; systematic_id "SPBC649.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 541283 542971 . + . mRNA SPBC649.05 ; systematic_id "SPBC649.05" ; colour "2" ; gene "cut12 ||| stf1 ||| SPBC649.05" ; Alias "cut12" ; db_xref "SPD:35/35C05" ; synonym "stf1" ; GO "GO:0005816; spindle pole body
; protein binding
GO:0090307; spindle assembly involved in mitosis
GO:0007094; mitotic spindle checkpoint
GO:0007088; regulation of mitosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=target is Plo1; qualifier=activates; db_xref=PMID:12815070; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, cut; cv=phenotype; date=20091118" ; primary_name "cut12" ; product "spindle pole body protein Cut12" ;
chromosome2 GeneDB CDS 541283 541289 . + . mRNA SPBC649.05 ; colour "2" ;
chromosome2 GeneDB CDS 541332 542971 . + . mRNA SPBC649.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 541290 541295 . + . misc_feature unknown_362 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 541315 541331 . + . misc_feature unknown_363 ; colour "6" ; note "ctaatctcaaaatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 542972 543081 . + . mRNA SPBC649.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC649.05" ; systematic_id "SPBC649.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 543359 543420 . + . mRNA SPBC354.01 ; ID "SPBC354.01" ; systematic_id "SPBC354.01" ; note "mRNA from AU006692" ;
chromosome2 GeneDB CDS_parts 543421 544725 . + . mRNA SPBC354.01 ; systematic_id "SPBC354.01" ; colour "7" ; gene "gtp1 ||| SPBC649.06 ||| SPBC354.01" ; Alias "gtp1" ; db_xref "SPD:22/22G02" ; synonym "SPBC649.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YGR173W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gtp1" ; product "GTP binding protein Gtp1 (predicted)" ;
chromosome2 GeneDB CDS 543421 543438 . + . mRNA SPBC354.01 ; colour "7" ;
chromosome2 GeneDB CDS 543484 543552 . + . mRNA SPBC354.01 ; colour "7" ;
chromosome2 GeneDB CDS 543668 543838 . + . mRNA SPBC354.01 ; colour "7" ;
chromosome2 GeneDB CDS 543892 544725 . + . mRNA SPBC354.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 543439 543444 . + . misc_feature unknown_364 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB intron 543439 543483 . + . intron SPBC354.01 ; systematic_id "SPBC354.01" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 543466 543483 . + . misc_feature unknown_365 ; colour "6" ; note "ctaatctaaattggctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 543553 543558 . + . misc_feature unknown_366 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 543553 543667 . + . intron SPBC354.01 ; systematic_id "SPBC354.01" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 543651 543667 . + . misc_feature unknown_367 ; colour "6" ; note "ctaacctagtcctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 543839 543844 . + . misc_feature unknown_368 ; colour "6" ; note "gtttgc, splice donor sequence" ;
chromosome2 GeneDB intron 543839 543891 . + . intron SPBC354.01 ; systematic_id "SPBC354.01" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 543874 543891 . + . misc_feature unknown_369 ; colour "6" ; note "ctaacaatggtaatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 544318 544672 . + . misc_feature unknown_370 ; note "nominal overlap with cosmid SPBC354 and cosmid SPBC649" ;
chromosome2 GeneDB 3'-UTR 544723 545070 . - . mRNA SPBC354.02c ; Alias "sec61" ; ID "SPBC354.02c" ; db_xref "EMBL:Y11376" ; systematic_id "SPBC354.02c" ; primary_name "sec61" ;
chromosome2 GeneDB CDS_parts 545071 546966 . - . mRNA SPBC354.02c ; systematic_id "SPBC354.02c" ; colour "2" ; gene "sec61 ||| SPBC354.02c" ; Alias "sec61" ; db_xref "SPD:26/26E09" ; GO "GO:0005783; endoplasmic reticulum
GO:0005784; translocon complex
GO:0008565; protein transporter activity
GO:0043022; ribosome binding
GO:0006616; SRP-dependent cotranslational protein targeting to membrane, translocation
GO:0006620; posttranslational protein targeting to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YLR378C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; primary_name "sec61" ; product "translocon alpha subunit Sec61" ;
chromosome2 GeneDB CDS 545071 546152 . - . mRNA SPBC354.02c ; colour "2" ;
chromosome2 GeneDB CDS 546331 546464 . - . mRNA SPBC354.02c ; colour "2" ;
chromosome2 GeneDB CDS 546590 546622 . - . mRNA SPBC354.02c ; colour "2" ;
chromosome2 GeneDB CDS 546679 546791 . - . mRNA SPBC354.02c ; colour "2" ;
chromosome2 GeneDB CDS 546845 546912 . - . mRNA SPBC354.02c ; colour "2" ;
chromosome2 GeneDB CDS 546957 546966 . - . mRNA SPBC354.02c ; colour "2" ;
chromosome2 GeneDB misc_feature 546153 546167 . - . misc_feature unknown_371 ; colour "6" ; note "ctaactttaatttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 546153 546330 . - . intron SPBC354.02c ; Alias "sec61" ; db_xref "EMBL:Y11376" ; systematic_id "SPBC354.02c" ; primary_name "sec61" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 546325 546330 . - . misc_feature unknown_372 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 546465 546478 . - . misc_feature unknown_373 ; colour "6" ; note "ctaaccattataag, splice branch and acceptor" ;
chromosome2 GeneDB intron 546465 546589 . - . intron SPBC354.02c ; Alias "sec61" ; db_xref "EMBL:Y11376" ; systematic_id "SPBC354.02c" ; primary_name "sec61" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 546584 546589 . - . misc_feature unknown_374 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 546623 546638 . - . misc_feature unknown_375 ; colour "6" ; note "ctaatgactttttcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 546623 546678 . - . intron SPBC354.02c ; Alias "sec61" ; db_xref "EMBL:Y11376" ; systematic_id "SPBC354.02c" ; primary_name "sec61" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 546673 546678 . - . misc_feature unknown_376 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 546792 546807 . - . misc_feature unknown_377 ; colour "6" ; note "ctaatatcgaatctag, splice branch and acceptor" ;
chromosome2 GeneDB intron 546792 546844 . - . intron SPBC354.02c ; Alias "sec61" ; db_xref "EMBL:Y11376" ; systematic_id "SPBC354.02c" ; primary_name "sec61" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 546839 546844 . - . misc_feature unknown_378 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 546913 546926 . - . misc_feature unknown_379 ; colour "6" ; note "ctaacactatacag, splice branch and acceptor" ;
chromosome2 GeneDB intron 546913 546956 . - . intron SPBC354.02c ; Alias "sec61" ; db_xref "EMBL:Y11376" ; systematic_id "SPBC354.02c" ; primary_name "sec61" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 546951 546956 . - . misc_feature unknown_380 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 546967 547002 . - . mRNA SPBC354.02c ; Alias "sec61" ; ID "SPBC354.02c" ; db_xref "EMBL:Y11376" ; systematic_id "SPBC354.02c" ; primary_name "sec61" ;
chromosome2 GeneDB misc_RNA 547325 547761 . + . misc_RNA SPNCRNA.66 ; Alias "prl66" ; db_xref "EMBL:AB084878 ||| PMID:12597277" ; systematic_id "SPNCRNA.66" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl66" ; gene "prl66 ||| SPNCRNA.66" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB misc_RNA 547327 547670 . + . misc_RNA SPNCRNA.104 ; db_xref "EMBL:AU011050" ; systematic_id "SPNCRNA.104" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU011050; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU011050; date=20050412" ; gene "SPNCRNA.104" ; product "non-coding RNA (predicted)" ; note "mRNA from AU011050; not associated with an ORF" ;
chromosome2 GeneDB 5'-UTR 548360 548669 . + . mRNA SPBC354.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.03" ; systematic_id "SPBC354.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 548670 549812 . + . mRNA SPBC354.03 ; systematic_id "SPBC354.03" ; colour "2" ; gene "swd3 ||| SPBC354.03" ; Alias "swd3" ; db_xref "SPD:43/43H03" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0000790; nuclear chromatin
GO:0051568; histone H3-K4 methylation" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human WDR5 ortholog; date=20090801 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100805" ; primary_name "swd3" ; product "WD repeat protein Swd3" ;
chromosome2 GeneDB CDS 548670 549812 . + . mRNA SPBC354.03 ; colour "2" ;
chromosome2 GeneDB CDS_parts 550296 550787 . + . mRNA SPBC354.04 ; db_xref "SPD:04/04G02" ; systematic_id "SPBC354.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC354.04" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 550296 550787 . + . mRNA SPBC354.04 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 550788 551223 . + . mRNA SPBC354.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.04" ; systematic_id "SPBC354.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 551222 551742 . - . mRNA SPBC354.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.05c" ; systematic_id "SPBC354.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 551743 554124 . - . mRNA SPBC354.05c ; systematic_id "SPBC354.05c" ; colour "7" ; gene "sre2 ||| SPBC354.05c" ; Alias "sre2" ; db_xref "SPD:38/38D04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070115 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0003677; DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005634; nucleus" ; primary_name "sre2" ; product "membrane-tethered transcription factor (predicted)" ; reserved_name "sre2" ;
chromosome2 GeneDB CDS 551743 554124 . - . mRNA SPBC354.05c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 554123 555291 . - . mRNA SPBC354.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.05c" ; systematic_id "SPBC354.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 555841 555892 . + . mRNA SPBC354.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.06" ; systematic_id "SPBC354.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 555893 556612 . + . mRNA SPBC354.06 ; systematic_id "SPBC354.06" ; colour "7" ; gene "SPBC354.06 ||| mrps16" ; Alias "mrps16" ; db_xref "SPD:43/43A02" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrps16" ; product "mitochondrial ribosomal protein subunit S16 (predicted)" ;
chromosome2 GeneDB CDS 555893 555969 . + . mRNA SPBC354.06 ; colour "7" ;
chromosome2 GeneDB CDS 556399 556612 . + . mRNA SPBC354.06 ; colour "7" ;
chromosome2 GeneDB misc_feature 555970 555975 . + . misc_feature unknown_381 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 556385 556398 . + . misc_feature unknown_382 ; colour "6" ; note "ttaactcaatatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 556613 557160 . + . mRNA SPBC354.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.06" ; systematic_id "SPBC354.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 558335 560246 . - . mRNA SPBC354.07c ; db_xref "SPD:36/36G06" ; systematic_id "SPBC354.07c" ; colour "7" ; GO "GO:0008142; oxysterol binding
GO:0006696; ergosterol biosynthetic process" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR001W and YKR003W and YOR237W and YPL145C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110" ; gene "SPBC354.07c" ; product "oxysterol binding protein (predicted)" ;
chromosome2 GeneDB CDS 558335 559225 . - . mRNA SPBC354.07c ; colour "7" ;
chromosome2 GeneDB CDS 559273 559474 . - . mRNA SPBC354.07c ; colour "7" ;
chromosome2 GeneDB CDS 559942 560028 . - . mRNA SPBC354.07c ; colour "7" ;
chromosome2 GeneDB CDS 560151 560163 . - . mRNA SPBC354.07c ; colour "7" ;
chromosome2 GeneDB CDS 560231 560246 . - . mRNA SPBC354.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 559226 559241 . - . misc_feature unknown_383 ; colour "6" ; note "ttaaccaaaatttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 559267 559272 . - . misc_feature unknown_384 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 559475 559491 . - . misc_feature unknown_385 ; colour "6" ; note "ctaactttacttcacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 559936 559941 . - . misc_feature unknown_386 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 560029 560049 . - . misc_feature unknown_387 ; colour "6" ; note "cttactttttcttcaaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 560145 560150 . - . misc_feature unknown_388 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB intron 560164 560230 . - . intron SPBC354.07c ; db_xref "PMID:18488015" ; systematic_id "SPBC354.07c" ;
chromosome2 GeneDB 5'-UTR 560247 560368 . - . mRNA SPBC354.07c ; ID "SPBC354.07c" ; db_xref "PMID:18488015" ; systematic_id "SPBC354.07c" ; synonym "SPNG1227" ;
chromosome2 GeneDB 3'-UTR 561122 561503 . - . mRNA SPBC354.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.08c" ; systematic_id "SPBC354.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 561504 564137 . - . mRNA SPBC354.08c ; db_xref "SPD:47/47A04" ; systematic_id "SPBC354.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBC354.08c" ; product "DUF221 family protein" ;
chromosome2 GeneDB CDS 561504 563928 . - . mRNA SPBC354.08c ; colour "10" ;
chromosome2 GeneDB CDS 563965 564137 . - . mRNA SPBC354.08c ; colour "10" ;
chromosome2 GeneDB misc_feature 563929 563945 . - . misc_feature unknown_389 ; colour "6" ; note "ctaacgtcgttgactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 563959 563964 . - . misc_feature unknown_390 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 564136 564808 . - . mRNA SPBC354.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.08c" ; systematic_id "SPBC354.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 565193 565309 . - . mRNA SPBC354.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.09c" ; systematic_id "SPBC354.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 565310 567694 . - . mRNA SPBC354.09c ; db_xref "SPD:38/38D05" ; systematic_id "SPBC354.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR126C and YPL176C and YOR256C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, active site residues absent; qualifier=predicted; date=20100924" ; colour "7" ; GO "GO:0043328; protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular sorting pathway
GO:0000324; fungal-type vacuole
GO:0071627; integral to fungal-type vacuole membrane" ; gene "SPBC354.09c" ; product "Tre1 family protein, involved in vacuolar protein degradation (predicted)" ;
chromosome2 GeneDB CDS 565310 567694 . - . mRNA SPBC354.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 567693 568382 . - . mRNA SPBC354.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.09c" ; systematic_id "SPBC354.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB rRNA 569121 569305 . + . rRNA SPRRNA.30 ; systematic_id "SPRRNA.30" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.30" ; product "5S rRNA" ;
chromosome2 GeneDB tRNA 570156 570226 . + . tRNA SPBTRNAGLY.06 ; systematic_id "SPBTRNAGLY.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033454; GCC codon-amino acid adaptor activity" ; gene "SPBTRNAGLY.06" ; product "tRNA Glycine" ; note "tRNA Gly anticodon GCC, Cove score 72.94" ;
chromosome2 GeneDB 5'-UTR 570968 571060 . + . mRNA SPBC354.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.10" ; systematic_id "SPBC354.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 571061 573952 . + . mRNA SPBC354.10 ; systematic_id "SPBC354.10" ; colour "7" ; gene "SPBC354.10" ; Alias "def1" ; db_xref "SPD:29/29F11" ; GO "GO:0006974; response to DNA damage stimulus
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000723; telomere maintenance
GO:0006283; transcription-coupled nucleotide- excision repair
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=20061214 ||| term=orthologous to S. cerevisiae YKL054C; date=19700101 ||| term=CUE domain protein; date=20081103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "def1" ; product "RNAPII degradation factor Def1 (predicted)" ;
chromosome2 GeneDB CDS 571061 573952 . + . mRNA SPBC354.10 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 573953 574157 . + . mRNA SPBC354.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.10" ; systematic_id "SPBC354.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 574632 575459 . + . misc_RNA SPNCRNA.312 ; db_xref "PMID:18488015" ; synonym "SPNG1231-32" ; systematic_id "SPNCRNA.312" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 575773 576291 . - . mRNA SPBC354.11c ; db_xref "SPD:05/05B08" ; systematic_id "SPBC354.11c" ; colour "6" ; gene "SPBC354.11c" ; product "dubious" ;
chromosome2 GeneDB CDS 575773 576291 . - . mRNA SPBC354.11c ; colour "6" ;
chromosome2 GeneDB misc_RNA 576376 576873 . + . misc_RNA SPNCRNA.313 ; db_xref "PMID:18488015" ; synonym "SPNG1233" ; systematic_id "SPNCRNA.313" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 578127 578188 . + . misc_RNA SPNCRNA.314 ; db_xref "PMID:18488015" ; synonym "SPNG1235" ; systematic_id "SPNCRNA.314" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 578723 578730 . + . mRNA SPBC354.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.12" ; systematic_id "SPBC354.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 578731 579738 . + . mRNA SPBC354.12 ; systematic_id "SPBC354.12" ; colour "2" ; gene "gpd3 ||| SPBC354.12" ; Alias "gpd3" ; db_xref "SPD:40/40C03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL052W and YGR192C and YJR009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006096; glycolysis
GO:0004365; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity" ; primary_name "gpd3" ; product "glyceraldehyde 3-phosphate dehydrogenase Gpd3" ; EC_number "1.2.1.12" ;
chromosome2 GeneDB CDS 578731 579738 . + . mRNA SPBC354.12 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 579739 579987 . + . mRNA SPBC354.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.12" ; systematic_id "SPBC354.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 580157 581149 . + . misc_RNA SPNCRNA.315 ; db_xref "PMID:18488015" ; synonym "SPNG1237-42" ; systematic_id "SPNCRNA.315" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 581142 581246 . + . mRNA SPBC354.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.13" ; systematic_id "SPBC354.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 581247 583448 . + . mRNA SPBC354.13 ; systematic_id "SPBC354.13" ; colour "7" ; gene "rga6 ||| SPBC354.13" ; Alias "rga6" ; db_xref "SPD:37/37H09" ; GO "GO:0005100; Rho GTPase activator activity
GO:0032319; regulation of Rho GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:11737264; date=20100917 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rga6" ; product "Rho-type GTPase activating protein Rga6 (predicted)" ;
chromosome2 GeneDB CDS 581247 583448 . + . mRNA SPBC354.13 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 583608 583793 . - . mRNA SPBC354.14c ; ID "SPBC354.14c" ; systematic_id "SPBC354.14c" ; note "mRNA from AU006816" ;
chromosome2 GeneDB CDS_parts 583794 585909 . - . mRNA SPBC354.14c ; systematic_id "SPBC354.14c" ; colour "7" ; db_xref "SPD:37/37D03" ; Alias "vac8" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=armadillo repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=modification, phosphorylated; qualifier=predicted; cv=pt_mod; date=19700101 ||| term=modification, palmitoylated; qualifier=predicted; cv=pt_mod; date=19700101 ||| term=orthologous to S. cerevisiae YEL013W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000324; vacuole (sensu Fungi)
GO:0000011; vacuole inheritance
GO:0042144; vacuole fusion, non-autophagic
GO:0043495; protein anchor
GO:0071255; CVT vesicle assembly
GO:0016236; macroautophagy" ; primary_name "vac8" ; product "vacuolar protein Vac8 (predicted)" ;
chromosome2 GeneDB CDS 583794 583960 . - . mRNA SPBC354.14c ; colour "7" ;
chromosome2 GeneDB CDS 584042 584935 . - . mRNA SPBC354.14c ; colour "7" ;
chromosome2 GeneDB CDS 585052 585411 . - . mRNA SPBC354.14c ; colour "7" ;
chromosome2 GeneDB CDS 585571 585691 . - . mRNA SPBC354.14c ; colour "7" ;
chromosome2 GeneDB CDS 585754 585836 . - . mRNA SPBC354.14c ; colour "7" ;
chromosome2 GeneDB CDS 585882 585909 . - . mRNA SPBC354.14c ; colour "7" ;
chromosome2 GeneDB misc_feature 583961 583974 . - . misc_feature unknown_391 ; colour "6" ; note "ctaactcattatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 583961 584041 . - . intron SPBC354.14c ; systematic_id "SPBC354.14c" ; note "intron confirmed by EST" ;
chromosome2 GeneDB misc_feature 584036 584041 . - . misc_feature unknown_392 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 584936 584951 . - . misc_feature unknown_393 ; colour "6" ; note "ctaactatgatactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 585046 585051 . - . misc_feature unknown_394 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 585412 585429 . - . misc_feature unknown_395 ; colour "6" ; note "ctaacacactttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 585565 585570 . - . misc_feature unknown_396 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 585692 585711 . - . misc_feature unknown_397 ; colour "6" ; note "ctaacgttatcttgttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 585748 585753 . - . misc_feature unknown_398 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 585837 585851 . - . misc_feature unknown_399 ; colour "6" ; note "ttaacaaatacatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 585876 585881 . - . misc_feature unknown_400 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 585908 585927 . - . mRNA SPBC354.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.14c" ; systematic_id "SPBC354.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 586476 586542 . + . mRNA SPBC354.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.15" ; systematic_id "SPBC354.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 586543 587781 . + . mRNA SPBC354.15 ; systematic_id "SPBC354.15" ; colour "2" ; gene "fap1 ||| SPBC354.15" ; Alias "fap1" ; db_xref "SPD:19/19G07" ; GO "GO:0051700; fructosyl-amino acid oxidase activity
GO:0019477; L-lysine catabolism
GO:0050660; FAD binding
GO:0050031; L-pipecolate oxidase activity
GO:0051699; proline oxidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fap1" ; product "L-pipecolate oxidase" ;
chromosome2 GeneDB CDS 586543 587781 . + . mRNA SPBC354.15 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 587782 588182 . + . mRNA SPBC354.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC354.15" ; systematic_id "SPBC354.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 587818 588441 . + . misc_feature unknown_401 ; note "nominal overlap with cosmid SPBC354 and SPBC1706" ;
chromosome2 GeneDB 5'-UTR 588348 588764 . + . mRNA SPBC1706.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1706.01" ; systematic_id "SPBC1706.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 588765 591194 . + . mRNA SPBC1706.01 ; systematic_id "SPBC1706.01" ; colour "2" ; gene "tea4 ||| SPBC1706.01 ||| wsh3" ; Alias "tea4" ; db_xref "SPD:28/28G01" ; synonym "wsh3" ; GO "GO:0031500; Tea1 cell-end complex
GO:0051285; cell cortex of cell tip
GO:0015630; microtubule cytoskeleton
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0007163; establishment and/or maintenance of cell polarity
GO:0007163; establishment and/or maintenance of cell polarity
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0010570; regulation of filamentous growth
GO:0007017; microtubule-based process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAR014C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, filament morphology aberrant; qualifier=deletion; db_xref=PMID:19542312; date=20090706 ||| term=name description, Win1- interacting SH3 domain protein; cv=name_description; date=20100126 ||| term=name description, Tip Elongation Aberrant; cv=name_description; date=20100126" ; primary_name "tea4" ; product "tip elongation aberrant protein Tea4" ;
chromosome2 GeneDB CDS 588765 591194 . + . mRNA SPBC1706.01 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 591195 591260 . + . mRNA SPBC1706.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1706.01" ; systematic_id "SPBC1706.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 591646 592613 . + . misc_RNA SPNCRNA.316 ; db_xref "PMID:18488015" ; synonym "SPNG1243" ; systematic_id "SPNCRNA.316" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB repeat_region 592650 594176 . - . repeat_region wtf2 ; systematic_id "wtf2" ; note "wtf element" ;
chromosome2 GeneDB CDS_parts 593188 593575 . - . mRNA SPBC1706.02c ; systematic_id "SPBC1706.02c" ; colour "13" ; gene "wtf2 ||| SPBC1706.02c" ; Alias "wtf2" ; pseudo "_no_value" ; synonym "SPBC1706.02" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf2" ; product "pseudogene wtf element Wtf2" ;
chromosome2 GeneDB CDS 593188 593261 . - . mRNA SPBC1706.02c ; colour "13" ;
chromosome2 GeneDB CDS 593311 593368 . - . mRNA SPBC1706.02c ; colour "13" ;
chromosome2 GeneDB CDS 593437 593575 . - . mRNA SPBC1706.02c ; colour "13" ;
chromosome2 GeneDB LTR 593824 594176 . - . LTR unknown_402 ; note "TF1 type" ;
chromosome2 GeneDB 5'-UTR 594395 594471 . + . mRNA SPBC1706.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1706.03" ; systematic_id "SPBC1706.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 594472 596748 . + . mRNA SPBC1706.03 ; systematic_id "SPBC1706.03" ; colour "7" ; gene "SPBC1706.03 ||| SPBC839.01 ||| fzo1" ; Alias "fzo1" ; db_xref "SPD:28/28B10" ; synonym "SPBC839.01" ; GO "GO:0003924; GTPase activity
GO:0008053; mitochondrial fusion
GO:0007005; mitochondrion organization and biogenesis
GO:0005741; mitochondrial outer membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR179C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fzo1" ; product "mitochondrial dynamin family fusion GTPase protein (predicted)" ;
chromosome2 GeneDB CDS 594472 596748 . + . mRNA SPBC1706.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 594626 596817 . + . misc_feature unknown_403 ; note "nominal overlap with cosmid SPBC1706 and cosmid SPBC839" ;
chromosome2 GeneDB 3'-UTR 596749 597036 . + . mRNA SPBC1706.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1706.03" ; systematic_id "SPBC1706.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 597310 597610 . + . mRNA SPBC839.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.02" ; systematic_id "SPBC839.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 597611 599334 . + . mRNA SPBC839.02 ; db_xref "SPD:35/35F06" ; systematic_id "SPBC839.02" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005509; calcium ion binding
GO:0070086; ubiquitin-dependent endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=orthologous to S. cerevisiae YJL084C and YKR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC839.02" ; product "arrestin Aly1 related, implicated in endocytosis" ;
chromosome2 GeneDB CDS 597611 599124 . + . mRNA SPBC839.02 ; colour "10" ;
chromosome2 GeneDB CDS 599256 599334 . + . mRNA SPBC839.02 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 599402 599427 . - . mRNA SPBC839.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.03c" ; systematic_id "SPBC839.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 599428 600183 . - . mRNA SPBC839.03c ; db_xref "SPD:09/09C09" ; systematic_id "SPBC839.03c" ; colour "7" ; GO "GO:0045116; protein neddylation
GO:0051443; positive regulation of ubiquitin ligase activity
GO:0008047; enzyme activator activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC839.03c" ; product "neddylation protein Dcn1 (predicted)" ;
chromosome2 GeneDB CDS 599428 600183 . - . mRNA SPBC839.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 600182 600502 . - . mRNA SPBC839.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.03c" ; systematic_id "SPBC839.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB promoter 601181 601190 . + . promoter unknown_404 ; colour "4" ; note "Homol E box" ;
chromosome2 GeneDB promoter 601202 601209 . + . promoter unknown_405 ; colour "4" ; note "Homol D box" ;
chromosome2 GeneDB 5'-UTR 601273 601280 . + . mRNA SPBC839.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.04" ; systematic_id "SPBC839.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 601281 602042 . + . mRNA SPBC839.04 ; systematic_id "SPBC839.04" ; colour "7" ; gene "rpl803 ||| rpl8-3 ||| rpk5-b ||| SPBC839.04 ||| rpkD4" ; Alias "rpl803" ; obsolete_name "SPBC24E9.04" ; db_xref "SPD:09/09D05" ; synonym "rpl8-3 ||| rpk5-b ||| rpkD4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR031C-A and YIL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0019843; rRNA binding
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; primary_name "rpl803" ; product "60S ribosomal protein L8 (predicted)" ;
chromosome2 GeneDB CDS 601281 602042 . + . mRNA SPBC839.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 602043 602096 . + . mRNA SPBC839.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.04" ; systematic_id "SPBC839.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 602625 602699 . - . tRNA SPBTRNALYS.06 ; systematic_id "SPBTRNALYS.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033417; CTT codon-amino acid adaptor activity" ; product "tRNA Lysine" ; note "tRNA Lys anticodon TTT, Cove score 77.52" ;
chromosome2 GeneDB misc_RNA 602940 603531 . + . misc_RNA SPNCRNA.317 ; db_xref "PMID:18488015" ; synonym "SPNG1246" ; systematic_id "SPNCRNA.317" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 603314 603556 . + . mRNA SPBC839.20 ; Alias "new14" ; systematic_id "SPBC839.20" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "6" ; primary_name "new14" ; product "dubious" ;
chromosome2 GeneDB CDS 603314 603556 . + . mRNA SPBC839.20 ; colour "6" ;
chromosome2 GeneDB 3'-UTR 603636 603703 . - . mRNA SPBC839.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.05c" ; systematic_id "SPBC839.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 603666 604417 . - . mRNA SPBC839.19 ; db_xref "PMID:21270388" ; systematic_id "SPBC839.19" ;
chromosome2 GeneDB CDS_parts 603704 604377 . - . mRNA SPBC839.05c ; systematic_id "SPBC839.05c" ; colour "7" ; gene "rps1701 ||| rps17-1 ||| SPBC839.05c" ; Alias "rps1701" ; obsolete_name "SPBC24E9.05c" ; db_xref "SPD:31/31G10" ; synonym "rps17-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML024W and YDR447C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; primary_name "rps1701" ; product "40S ribosomal protein S17 (predicted)" ;
chromosome2 GeneDB CDS 603704 604096 . - . mRNA SPBC839.05c ; colour "7" ;
chromosome2 GeneDB CDS 604375 604377 . - . mRNA SPBC839.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 604097 604111 . - . misc_feature unknown_406 ; colour "6" ; note "ctaacattcctctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 604369 604374 . - . misc_feature unknown_407 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 604378 604406 . - . mRNA SPBC839.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.05c" ; systematic_id "SPBC839.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 604418 604920 . - . mRNA SPBC839.19 ; Alias "new20" ; systematic_id "SPBC839.19" ; controlled_curation "term=conserved in Eukaryotes; date=20100420 ||| term=conserved in Eukaryotes only; date=20100420 ||| term=conserved in Vertebrates; date=20100420 ||| term=conserved in Metazoa; date=20100420 ||| term=conserved in Fungi; date=20100420 ||| term=no apparent S. cerevisiae ortholog; date=20100420 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "10" ; primary_name "new20" ; product "conserved eukaryotic protein" ;
chromosome2 GeneDB CDS 604418 604577 . - . mRNA SPBC839.19 ; colour "10" ;
chromosome2 GeneDB CDS 604733 604920 . - . mRNA SPBC839.19 ; colour "10" ;
chromosome2 GeneDB promoter 604445 604452 . - . promoter unknown_408 ; colour "4" ; note "Homol E box" ;
chromosome2 GeneDB promoter 604467 604476 . - . promoter unknown_409 ; colour "4" ; note "Homol D box" ;
chromosome2 GeneDB intron 604578 604732 . - . intron unknown_410 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome2 GeneDB misc_RNA 605716 606557 . + . misc_RNA SPNCRNA.318 ; db_xref "PMID:18488015" ; synonym "SPNG1248" ; systematic_id "SPNCRNA.318" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 606728 607395 . + . misc_RNA SPNCRNA.319 ; db_xref "PMID:18488015" ; synonym "SPNG1249" ; systematic_id "SPNCRNA.319" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 608171 611284 . + . mRNA SPBC839.06 ; systematic_id "SPBC839.06" ; colour "2" ; gene "cta3 ||| SPBC839.06" ; Alias "cta3" ; obsolete_name "SPBC24E9.06" ; db_xref "SPD:47/47H02" ; GO "GO:0070588; transmembrane calcium ion transport
GO:0005388; calcium-transporting ATPase activity
GO:0006874; calcium ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=gene expression, expression induced by salt stress; db_xref=PMID:10428498; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDR038C and YDR039C and YDR040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target of Wis1-Sty1 MAPKK-MAPK signaling pathway; db_xref=PMID:10428498; date=20100122" ; primary_name "cta3" ; product "P-type ATPase, calcium transporting Cta3" ;
chromosome2 GeneDB CDS 608171 611284 . + . mRNA SPBC839.06 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 612436 612669 . + . mRNA SPBC839.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.07" ; systematic_id "SPBC839.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 612670 613086 . + . mRNA SPBC839.07 ; systematic_id "SPBC839.07" ; colour "2" ; gene "ibp1 ||| SPBC839.07" ; Alias "ibp1" ; db_xref "SPD:03/03C08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14508607; date=19700101 ||| term=orthologous to S. cerevisiae YGR203W and YPR200C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, itty bitty phosphatase; db_xref=PMID:14508607; cv=name_description; date=20090716" ; GO "GO:0090329; regulation of DNA-dependent DNA replication
GO:0006261; DNA replication
GO:0006261; DNA replication
GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation" ; primary_name "ibp1" ; product "Cdc25 family phosphatase Ibp1" ; EC_number "3.1.3.16" ;
chromosome2 GeneDB CDS 612670 613086 . + . mRNA SPBC839.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 613087 613319 . + . mRNA SPBC839.07 ; ID "SPBC839.07" ; systematic_id "SPBC839.07" ; note "mRNA from AU011777" ;
chromosome2 GeneDB 3'-UTR 613481 613506 . - . mRNA SPBC839.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.08c" ; systematic_id "SPBC839.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 613507 616466 . - . mRNA SPBC839.08c ; systematic_id "SPBC839.08c" ; colour "2" ; gene "its8 ||| SPBC839.08c" ; Alias "its8" ; db_xref "SPD:47/47F02" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006506; GPI anchor biosynthesis
GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0051377; mannose-ethanolamine phosphotransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060913 ||| term=name description, Immunosuppressant and Temperature Sensitive; cv=name_description; db_xref=PMID:11297516; date=20060913 ||| term=orthologous to S. cerevisiae YKL165C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "its8" ; product "pig-N (predicted)" ;
chromosome2 GeneDB CDS 613507 616163 . - . mRNA SPBC839.08c ; colour "2" ;
chromosome2 GeneDB CDS 616316 616466 . - . mRNA SPBC839.08c ; colour "2" ;
chromosome2 GeneDB misc_feature 616164 616182 . - . misc_feature unknown_411 ; colour "6" ; note "ctaaccaatatgcttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 616310 616315 . - . misc_feature unknown_412 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 616465 616561 . - . mRNA SPBC839.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.08c" ; systematic_id "SPBC839.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 617277 617678 . - . mRNA SPBC839.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.09c" ; systematic_id "SPBC839.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 617679 618138 . - . mRNA SPBC839.09c ; systematic_id "SPBC839.09c" ; colour "7" ; gene "SPBC839.09c ||| mrp21" ; Alias "mrp21" ; db_xref "SPD:04/04B04" ; GO "GO:0003735; structural constituent of ribosome
GO:0005763; mitochondrial small ribosomal subunit
GO:0070124; mitochondrial translational initiation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL090W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mrp21" ; product "mitochondrial ribosomal protein subunit Mrp21 (predicted)" ;
chromosome2 GeneDB CDS 617679 617968 . - . mRNA SPBC839.09c ; colour "7" ;
chromosome2 GeneDB CDS 618063 618138 . - . mRNA SPBC839.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 618137 618156 . - . mRNA SPBC839.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.09c" ; systematic_id "SPBC839.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 618354 620539 . + . mRNA SPBC839.10 ; systematic_id "SPBC839.10" ; colour "2" ; gene "usp107 ||| snu71 ||| SPBC839.10" ; Alias "usp107" ; db_xref "SPD:37/37H02" ; synonym "snu71" ; GO "GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005685; snRNP U1
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17264129; date=20070201 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YGR013w; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "usp107" ; product "U1 snRNP-associated protein Usp107" ;
chromosome2 GeneDB CDS 618354 618372 . + . mRNA SPBC839.10 ; colour "2" ;
chromosome2 GeneDB CDS 618422 620259 . + . mRNA SPBC839.10 ; colour "2" ;
chromosome2 GeneDB CDS 620309 620539 . + . mRNA SPBC839.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 618373 618378 . + . misc_feature unknown_413 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 618407 618421 . + . misc_feature unknown_414 ; colour "6" ; note "ctaattttatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 620260 620265 . + . misc_feature unknown_415 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 620294 620308 . + . misc_feature unknown_416 ; colour "6" ; note "ctaacacattatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 620540 620741 . + . mRNA SPBC839.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.10" ; systematic_id "SPBC839.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 620577 620634 . - . mRNA SPBC839.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.11c" ; systematic_id "SPBC839.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 620635 621603 . - . mRNA SPBC839.11c ; systematic_id "SPBC839.11c" ; colour "2" ; gene "hut1 ||| SPBC839.11c" ; Alias "hut1" ; db_xref "SPD:13/13G09" ; GO "GO:0005459; UDP-galactose transporter activity
GO:0072334; UDP-galactose transmembrane transport
GO:0060904; regulation of protein folding in the endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL244C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hut1" ; product "uridine diphosphate-N-acetylglucosamine transporter Hut1" ;
chromosome2 GeneDB CDS 620635 621603 . - . mRNA SPBC839.11c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 621602 621840 . - . mRNA SPBC839.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.11c" ; systematic_id "SPBC839.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 621896 622331 . + . mRNA SPBC839.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.12" ; systematic_id "SPBC839.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 622332 622964 . + . mRNA SPBC839.12 ; systematic_id "SPBC839.12" ; colour "2" ; gene "rpc31 ||| SPBC839.12" ; Alias "rpc31" ; db_xref "SPD:07/07C05" ; GO "GO:0005666; DNA-directed RNA polymerase III complex
GO:0006383; transcription from RNA polymerase III promoter
GO:0003899; DNA-directed RNA polymerase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL151C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rpc31" ; product "DNA-directed RNA polymerase III complex subunit Rpc31" ;
chromosome2 GeneDB CDS 622332 622964 . + . mRNA SPBC839.12 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 622965 623102 . + . mRNA SPBC839.12 ; ID "SPBC839.12" ; systematic_id "SPBC839.12" ; note "mRNA from AU013816" ;
chromosome2 GeneDB 3'-UTR 623323 623399 . - . mRNA SPBC839.13c ; ID "SPBC839.13c" ; systematic_id "SPBC839.13c" ; note "mRNA from AU006519" ;
chromosome2 GeneDB CDS_parts 623400 624039 . - . mRNA SPBC839.13c ; systematic_id "SPBC839.13c" ; colour "2" ; gene "rpl1601 ||| SPBC839.13c" ; Alias "rpl1601" ; obsolete_name "rpl16-1 ||| rpl13a-1 ||| SPBC24E9.13c" ; db_xref "SPD:31/31G01" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL133C and YNL069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1601" ; product "60S ribosomal protein L13/L16 (predicted)" ;
chromosome2 GeneDB CDS 623400 623952 . - . mRNA SPBC839.13c ; colour "2" ;
chromosome2 GeneDB CDS 623999 624039 . - . mRNA SPBC839.13c ; colour "2" ;
chromosome2 GeneDB misc_feature 623953 623965 . - . misc_feature unknown_417 ; colour "6" ; note "ctaacatgaatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 623953 623998 . - . intron SPBC839.13c ; systematic_id "SPBC839.13c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 623993 623998 . - . misc_feature unknown_418 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 624038 624041 . - . mRNA SPBC839.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.13c" ; systematic_id "SPBC839.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB promoter 624092 624098 . - . promoter unknown_419 ; colour "4" ; note "Homol D box" ;
chromosome2 GeneDB promoter 624114 624123 . - . promoter unknown_420 ; colour "4" ; note "Homol E box" ;
chromosome2 GeneDB CDS_parts 624426 625197 . - . mRNA SPBC839.14c ; db_xref "SPD:09/09E10" ; systematic_id "SPBC839.14c" ; colour "7" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0005737; cytoplasm
GO:0016192; vesicle-mediated transport
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL064W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC839.14c" ; product "methyltransferase involved in endocytosis (predicted)" ;
chromosome2 GeneDB CDS 624426 625101 . - . mRNA SPBC839.14c ; colour "7" ;
chromosome2 GeneDB CDS 625157 625197 . - . mRNA SPBC839.14c ; colour "7" ;
chromosome2 GeneDB misc_feature 625102 625115 . - . misc_feature unknown_421 ; colour "6" ; note "ctaaaggtttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 625151 625156 . - . misc_feature unknown_422 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 626004 626105 . - . mRNA SPBC839.15c ; ID "SPBC839.15c" ; systematic_id "SPBC839.15c" ; note "mRNA from AU008702" ;
chromosome2 GeneDB CDS_parts 626106 627488 . - . mRNA SPBC839.15c ; systematic_id "SPBC839.15c" ; colour "2" ; gene "ef1a-c ||| SPBC839.15c" ; Alias "ef1a-c" ; obsolete_name "ef1-b" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation
GO:0005853; eukaryotic translation elongation factor 1 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR080W and YBR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ef1a-c" ; product "translation elongation factor EF-1 alpha Ef1a-c" ;
chromosome2 GeneDB CDS 626106 627488 . - . mRNA SPBC839.15c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 627487 627506 . - . mRNA SPBC839.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.15c" ; systematic_id "SPBC839.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 628001 628029 . + . mRNA SPBC839.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.16" ; systematic_id "SPBC839.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 628030 631171 . + . mRNA SPBC839.16 ; db_xref "SPD:30/30B02" ; systematic_id "SPBC839.16" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR084W and YGR204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=catalytic activity, trifunctional enzyme; db_xref=PMID:8226914; cv=cat_act; date=20081211 ||| term=ssDNA binding within synthetase domain; db_xref=PMID:8826914; date=20081212" ; GO "GO:0004329; formate-tetrahydrofolate ligase activity
GO:0004477; methenyltetrahydrofolate cyclohydrolase activity
GO:0004488; methylenetetrahydrofolate dehydrogenase (NADP+) activity
GO:0003697; single-stranded DNA binding
GO:0009257; 10-formyltetrahydrofolate biosynthesis
GO:0006730; one-carbon compound metabolic process
GO:0009113; purine base biosynthesis
GO:0046656; folic acid biosynthetic process" ; gene "SPBC839.16" ; product "C1-5,6,7,8-tetrahydrofolate (THF) synthase" ; EC_number "6.3.4.3 ||| 3.5.4.9 ||| 1.5.1.5" ;
chromosome2 GeneDB CDS 628030 628064 . + . mRNA SPBC839.16 ; colour "2" ;
chromosome2 GeneDB CDS 628115 628259 . + . mRNA SPBC839.16 ; colour "2" ;
chromosome2 GeneDB CDS 628538 631171 . + . mRNA SPBC839.16 ; colour "2" ;
chromosome2 GeneDB misc_feature 628065 628070 . + . misc_feature unknown_423 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 628099 628114 . + . misc_feature unknown_424 ; colour "6" ; note "ctaacagttgaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 628260 628265 . + . misc_feature unknown_425 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 628526 628537 . + . misc_feature unknown_426 ; colour "6" ; note "ctaactgtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 631172 631466 . + . mRNA SPBC839.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.16" ; systematic_id "SPBC839.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 631697 631841 . - . mRNA SPBC839.17c ; ID "SPBC839.17c" ; systematic_id "SPBC839.17c" ; note "mRNA from AU012016" ;
chromosome2 GeneDB CDS_parts 631842 632642 . - . mRNA SPBC839.17c ; systematic_id "SPBC839.17c" ; colour "2" ; gene "fkh1 ||| SPBC839.17c" ; Alias "fkh1" ; obsolete_name "SPBC24E9.17c" ; db_xref "SPD:10/10B03" ; GO "GO:0000747; conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL135C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fkh1" ; product "FKBP-type peptidyl-prolyl cis-trans isomerase Fkh1" ; EC_number "5.2.1.8" ;
chromosome2 GeneDB CDS 631842 631881 . - . mRNA SPBC839.17c ; colour "2" ;
chromosome2 GeneDB CDS 631929 632142 . - . mRNA SPBC839.17c ; colour "2" ;
chromosome2 GeneDB CDS 632248 632267 . - . mRNA SPBC839.17c ; colour "2" ;
chromosome2 GeneDB CDS 632396 632433 . - . mRNA SPBC839.17c ; colour "2" ;
chromosome2 GeneDB CDS 632616 632642 . - . mRNA SPBC839.17c ; colour "2" ;
chromosome2 GeneDB misc_feature 631882 631894 . - . misc_feature unknown_427 ; colour "6" ; note "ttaacctatatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 631882 631928 . - . intron SPBC839.17c ; systematic_id "SPBC839.17c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 631923 631928 . - . misc_feature unknown_428 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 632143 632162 . - . misc_feature unknown_429 ; colour "6" ; note "ataaccgtgggatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 632143 632247 . - . intron SPBC839.17c ; systematic_id "SPBC839.17c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 632242 632247 . - . misc_feature unknown_430 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 632268 632281 . - . misc_feature unknown_431 ; colour "6" ; note "ctaacaccatttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 632268 632395 . - . intron SPBC839.17c ; systematic_id "SPBC839.17c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 632390 632395 . - . misc_feature unknown_432 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 632434 632449 . - . misc_feature unknown_433 ; colour "6" ; note "ctaacctttaaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 632610 632615 . - . misc_feature unknown_434 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 632641 632675 . - . mRNA SPBC839.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC839.17c" ; systematic_id "SPBC839.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 633556 634982 . + . misc_feature unknown_435 ; note "nominal overlap between cosmid c839 and c115" ;
chromosome2 GeneDB 3'-UTR 633831 634343 . - . mRNA SPBC115.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC115.03" ; systematic_id "SPBC115.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 634344 635450 . - . mRNA SPBC115.03 ; db_xref "SPD:17/17D09" ; systematic_id "SPBC115.03" ; synonym "SPBC839.18c" ; GO "GO:0006740; NADPH regeneration
GO:0016491; oxidoreductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR315W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20100621 ||| term=human GFOD1 ortholog; date=20100728" ; colour "10" ; product "gfo/idh/mocA family oxidoreductase (predicted)" ;
chromosome2 GeneDB CDS 634344 635450 . - . mRNA SPBC115.03 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 635449 635538 . - . mRNA SPBC115.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC115.03" ; systematic_id "SPBC115.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 636435 636502 . - . misc_feature unknown_436 ; note "similar to 241 (-1) 15464 15531 MISPCG X54421 S. pombe complete mitochondrial genome" ;
chromosome2 GeneDB 5'-UTR 637461 637653 . + . mRNA SPBC115.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC115.02c" ; systematic_id "SPBC115.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 637654 639018 . + . mRNA SPBC115.02c ; db_xref "SPD:21/21B06" ; systematic_id "SPBC115.02c" ; colour "7" ; GO "GO:0016887; ATPase activity
GO:0005739; mitochondrion
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL052W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC115.02c" ; product "AFG1 family mitochondrial ATPase (predicted)" ;
chromosome2 GeneDB CDS 637654 639018 . + . mRNA SPBC115.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 639330 639373 . + . mRNA SPBC115.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC115.01c" ; systematic_id "SPBC115.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 639374 640137 . + . mRNA SPBC115.01c ; systematic_id "SPBC115.01c" ; colour "7" ; gene "rrp46 ||| SPBC115.01c" ; Alias "rrp46" ; db_xref "SPD:09/09D08" ; GO "GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0000175; 3'-5'-exoribonuclease activity
GO:0003723; RNA binding
GO:0006364; 35S primary transcript processing
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rrp46" ; product "exosome subunit Rrp46 (predicted)" ;
chromosome2 GeneDB CDS 639374 639428 . + . mRNA SPBC115.01c ; colour "7" ;
chromosome2 GeneDB CDS 639512 640137 . + . mRNA SPBC115.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 639429 639434 . + . misc_feature unknown_437 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 639497 639511 . + . misc_feature unknown_438 ; colour "6" ; note "ctaacatcattgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 640138 640706 . + . mRNA SPBC115.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC115.01c" ; systematic_id "SPBC115.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 640454 640555 . + . misc_feature unknown_439 ; note "nominal overlap with cosmid SPBC947, EM:AL021837 S.pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 640454 640555 . - . misc_feature unknown_440 ; note "nominal overlap with cosmid SPBC115, EM:AL096796 S. pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 641313 641685 . + . mRNA SPBC947.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.15c" ; systematic_id "SPBC947.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 641686 643341 . + . mRNA SPBC947.15c ; db_xref "SPD:34/34G02" ; systematic_id "SPBC947.15c" ; colour "7" ; GO "GO:0006116; NADH oxidation
GO:0003954; NADH dehydrogenase activity
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR145C and YDL085W and YML120C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; gene "SPBC947.15c" ; product "mitochondrial NADH dehydrogenase (predicted)" ;
chromosome2 GeneDB CDS 641686 643341 . + . mRNA SPBC947.15c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 643342 643622 . + . mRNA SPBC947.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.15c" ; systematic_id "SPBC947.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 644283 644290 . + . mRNA SPBC947.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.14c" ; systematic_id "SPBC947.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 644291 644669 . + . mRNA SPBC947.14c ; db_xref "SPD:02/02G06" ; systematic_id "SPBC947.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC947.14c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 644291 644479 . + . mRNA SPBC947.14c ; colour "8" ;
chromosome2 GeneDB CDS 644547 644669 . + . mRNA SPBC947.14c ; colour "8" ;
chromosome2 GeneDB misc_feature 644480 644485 . + . misc_feature unknown_441 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 644532 644546 . + . misc_feature unknown_442 ; colour "6" ; note "ttaaccaaattgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 644670 644943 . + . mRNA SPBC947.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.14c" ; systematic_id "SPBC947.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 644943 645219 . - . mRNA SPBC947.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.13" ; systematic_id "SPBC947.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 645220 646578 . - . mRNA SPBC947.13 ; systematic_id "SPBC947.13" ; colour "7" ; gene "SPBC947.13 ||| rba50" ; Alias "rba50" ; db_xref "SPD:21/21A12" ; GO "GO:0006366; transcription from RNA polymerase II promoter
GO:0005665; DNA-directed RNA polymerase II, core complex
GO:0003899; DNA-directed RNA polymerase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human RPAP1 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YDR527W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rba50" ; product "RNA polymerase II associated protein (predicted)" ;
chromosome2 GeneDB CDS 645220 646578 . - . mRNA SPBC947.13 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 646577 646755 . - . mRNA SPBC947.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.13" ; systematic_id "SPBC947.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 647085 647506 . - . mRNA SPBC947.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.12" ; systematic_id "SPBC947.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 647507 648989 . - . mRNA SPBC947.12 ; systematic_id "SPBC947.12" ; colour "2" ; gene "kms2 ||| SPBC947.12" ; Alias "kms2" ; db_xref "SPD:23/23H09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0034993; SUN-KASH complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=KASH domain protein; qualifier=predicted; date=20091127 ||| term=name description, Karyogamy Meiotic Segregation protein; cv=name_description; date=20091127" ; primary_name "kms2" ; product "spindle pole body protein Kms2" ;
chromosome2 GeneDB CDS 647507 648070 . - . mRNA SPBC947.12 ; colour "2" ;
chromosome2 GeneDB CDS 648137 648883 . - . mRNA SPBC947.12 ; colour "2" ;
chromosome2 GeneDB CDS 648927 648989 . - . mRNA SPBC947.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 648071 648086 . - . misc_feature unknown_443 ; colour "6" ; note "ctaatttgtttaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 648131 648136 . - . misc_feature unknown_444 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 648876 648904 . - . misc_feature unknown_445 ; colour "6" ; note "ctaattttcgacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 648921 648926 . - . misc_feature unknown_446 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 648988 649011 . - . mRNA SPBC947.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.12" ; systematic_id "SPBC947.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 649893 649979 . + . mRNA SPBC947.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.11c" ; systematic_id "SPBC947.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 649980 652833 . + . mRNA SPBC947.11c ; systematic_id "SPBC947.11c" ; colour "2" ; gene "elg1 ||| SPBC947.11c" ; Alias "elg1" ; db_xref "SPD:47/47C12" ; GO "GO:0005663; DNA replication factor C complex
GO:0031391; Elg1 RFC-like complex
GO:0000790; nuclear chromatin
GO:0003689; DNA clamp loader activity
GO:0006310; DNA recombination
GO:0006281; DNA repair
GO:0006261; DNA replication
GO:0000723; telomere maintenance
GO:0043596; nuclear relication fork
GO:0007064; mitotic sister chromatid cohesion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR144C; date=19700101 ||| term=AAA family ATPase; qualifier=inferred from context; date=19700101 ||| term=BRCT domain; qualifier=inferred from context; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16040599; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "elg1" ; product "DNA replication factor C complex subunit Elg1" ;
chromosome2 GeneDB CDS 649980 651564 . + . mRNA SPBC947.11c ; colour "2" ;
chromosome2 GeneDB CDS 651609 652452 . + . mRNA SPBC947.11c ; colour "2" ;
chromosome2 GeneDB CDS 652500 652833 . + . mRNA SPBC947.11c ; colour "2" ;
chromosome2 GeneDB misc_feature 651565 651570 . + . misc_feature unknown_447 ; colour "6" ; note "gtaggg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 651594 651608 . + . misc_feature unknown_448 ; colour "6" ; note "ctaacataattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 652453 652458 . + . misc_feature unknown_449 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 652491 652499 . + . misc_feature unknown_450 ; colour "6" ; note "ttaatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 652834 652916 . + . mRNA SPBC947.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.11c" ; systematic_id "SPBC947.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 653028 653090 . - . mRNA SPBC947.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.10" ; systematic_id "SPBC947.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 653091 655189 . - . mRNA SPBC947.10 ; systematic_id "SPBC947.10" ; colour "7" ; gene "SPBC947.10" ; Alias "dsc1" ; db_xref "SPD:27/27H06" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0043162; ubiquitin-dependent protein catabolism via the multivesicular body pathway
GO:0005794; Golgi apparatus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060726 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YKL034W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; primary_name "dsc1" ; product "ubiquitin-protein ligase E3 (predicted)" ; reserved_name "dsc1" ;
chromosome2 GeneDB CDS 653091 653363 . - . mRNA SPBC947.10 ; colour "7" ;
chromosome2 GeneDB CDS 653432 655189 . - . mRNA SPBC947.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 653364 653378 . - . misc_feature unknown_451 ; colour "6" ; note "ctaactcaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 653426 653431 . - . misc_feature unknown_452 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 655188 655337 . - . mRNA SPBC947.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.10" ; systematic_id "SPBC947.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 656117 656322 . - . mRNA SPBC947.09 ; ID "SPBC947.09" ; systematic_id "SPBC947.09" ; note "mRNA from AU009771" ;
chromosome2 GeneDB CDS_parts 656323 657108 . - . mRNA SPBC947.09 ; db_xref "SPD:43/43C01" ; systematic_id "SPBC947.09" ; colour "10" ; GO "GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR533C and YPL280W and YOR391C and YMR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC947.09" ; product "ThiJ domain protein" ;
chromosome2 GeneDB CDS 656323 657108 . - . mRNA SPBC947.09 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 657107 657755 . - . mRNA SPBC947.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.09" ; systematic_id "SPBC947.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 658451 658531 . + . tRNA SPBTRNAMET.04 ; systematic_id "SPBTRNAMET.04" ; GO "GO:0005737; cytoplasm
GO:0006412; translation
GO:0033425; CAT codon-amino acid adaptor activity" ; gene "SPBTRNAMET.04" ; product "tRNA Methionine" ; note "tRNA Met anticodon CAT, Cove score 46.51" ;
chromosome2 GeneDB CDS_parts 659085 660101 . + . mRNA SPBC947.08c ; systematic_id "SPBC947.08c" ; colour "2" ; gene "SPBC947.08c" ; Alias "hip4" ; db_xref "SPD:15/15B05" ; synonym "hpc2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:20976105; date=20101124 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to high temerature; qualifier=deletion; db_xref=PMID:20976105; date=20101124 ||| term=phenotype, sensitive to TBZ; qualifier=deletion; db_xref=PMID:20976105; date=20101124 ||| term=phenotype, sensitive to micritubule depolymerizing drugs; qualifier=deletion; db_xref=PMID:20976105; date=20101124 ||| term=orthologous to S. cerevisiae YBR215W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Eukaryotes only; date=20101124 ||| term=species distribution, conserved in Vertebrates; date=20101124 ||| term=species distribution, conserved in Metazoa; date=20101124 ||| term=human UBN1 ortholog; db_xref=PMID:20976105; date=20101124 ||| term=name description, HIRA interacting protein; db_xref=PMID:20976105; date=20101124" ; GO "GO:0000790; nuclear chromatin
GO:0006336; DNA replication-independent nucleosome assembly
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; primary_name "hip4" ; product "histone promoter control protein Hip4" ;
chromosome2 GeneDB CDS 659085 660101 . + . mRNA SPBC947.08c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 660102 660176 . + . mRNA SPBC947.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.08c" ; systematic_id "SPBC947.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 660285 660383 . - . mRNA SPBC947.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.07" ; systematic_id "SPBC947.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 660384 661085 . - . mRNA SPBC947.07 ; db_xref "SPD:08/08C03" ; systematic_id "SPBC947.07" ; colour "7" ; GO "GO:0042273; ribosomal large subunit biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=surfeit locus (SURF40 family); date=19700101 ||| term=orthologous to S. cerevisiae YKL082C; qualifier=C_term; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC947.07" ; product "ribosome biogenesis protein Rrp14-C (predicted)" ;
chromosome2 GeneDB CDS 660384 661085 . - . mRNA SPBC947.07 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 661084 661388 . - . mRNA SPBC947.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.07" ; systematic_id "SPBC947.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 661588 662939 . + . mRNA SPBC947.06c ; ID "SPBC947.06c" ; db_xref "PMID:18488015" ; systematic_id "SPBC947.06c" ; note "From Solexa transcript SPNG1254 ||| This UTR seems to be specific for the meiotic transcript" ;
chromosome2 GeneDB CDS_parts 662940 664436 . + . mRNA SPBC947.06c ; db_xref "SPD:24/24C04" ; systematic_id "SPBC947.06c" ; colour "7" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC947.06c" ; product "spermidine family transporter (predicted)" ;
chromosome2 GeneDB CDS 662940 664436 . + . mRNA SPBC947.06c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 664437 665070 . + . mRNA SPBC947.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.06c" ; systematic_id "SPBC947.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 667125 668819 . + . mRNA SPBC947.05c ; db_xref "SPD:35/35C12" ; systematic_id "SPBC947.05c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR214W and YKL220C and YOR381W and YNR060W and YGL160W and YLR047C and YOR384W and YLL051C and YOL152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0015677; copper ion import
GO:0034755; iron ion transmembrane transport
GO:0015892; siderophore-iron transport
GO:0006879; iron ion homeostasis
GO:0000293; ferric-chelate reductase activity
GO:0005886; plasma membrane
GO:0005506; iron ion binding
GO:0050660; FAD binding
GO:0016021; integral to membrane" ; gene "SPBC947.05c" ; product "ferric-chelate reductase (predicted)" ; EC_number "1.16.1.7" ;
chromosome2 GeneDB CDS 667125 668819 . + . mRNA SPBC947.05c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 669691 669739 . - . mRNA SPBC947.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.04" ; systematic_id "SPBC947.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 669740 672661 . - . mRNA SPBC947.04 ; db_xref "SPD:47/47E03" ; systematic_id "SPBC947.04" ; colour "12" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=DIPSY domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; evidence=ISS; qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; gene "SPBC947.04" ; product "cell surface glycoprotein (predicted), DIPSY family" ;
chromosome2 GeneDB CDS 669740 672661 . - . mRNA SPBC947.04 ; colour "12" ;
chromosome2 GeneDB 5'-UTR 672660 673762 . - . mRNA SPBC947.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.04" ; systematic_id "SPBC947.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 672953 673783 . + . misc_RNA SPNCRNA.321 ; db_xref "PMID:18488015" ; synonym "SPNG1260" ; systematic_id "SPNCRNA.321" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 674078 676143 . + . misc_RNA SPNCRNA.322 ; db_xref "PMID:18488015" ; synonym "SPNG1262" ; systematic_id "SPNCRNA.322" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB LTR 676281 676634 . + . LTR unknown_453 ; colour "4" ; note "tf1 type LTR" ;
chromosome2 GeneDB CDS_parts 676629 677127 . + . mRNA SPBC947.03c ; systematic_id "SPBC947.03c" ; colour "7" ; gene "SPBC947.03c" ; Alias "naa38" ; db_xref "SPD:01/01D11" ; synonym "mak31" ; GO "GO:0031417; NatC complex
GO:0005737; cytoplasm
GO:0017196; N-terminal peptidyl-methionine acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR020C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; primary_name "naa38" ; product "NatC N-acetyltransferase non catalytic Sm-like domain subunit Naa38 (predicted)" ;
chromosome2 GeneDB CDS 676629 676908 . + . mRNA SPBC947.03c ; colour "7" ;
chromosome2 GeneDB CDS 677057 677127 . + . mRNA SPBC947.03c ; colour "7" ;
chromosome2 GeneDB CDS_parts 677583 679634 . - . mRNA SPBC947.02 ; systematic_id "SPBC947.02" ; colour "2" ; gene "apl2 ||| SPBC947.02" ; Alias "apl2" ; db_xref "SPD:27/27F07" ; GO "GO:0030276; clathrin binding
GO:0016197; endosome transport
GO:0030121; AP-1 adaptor complex
GO:0005794; Golgi apparatus
GO:0005768; endosome
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL135C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=phenotype, sensitive to FK605; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=adaptin family; date=20100902" ; primary_name "apl2" ; product "AP-1 adaptor complex subunit beta subunit Apl2" ;
chromosome2 GeneDB CDS 677583 679634 . - . mRNA SPBC947.02 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 679633 679701 . - . mRNA SPBC947.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.02" ; systematic_id "SPBC947.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 679977 680548 . - . mRNA SPBC947.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.01" ; systematic_id "SPBC947.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 680549 682626 . - . mRNA SPBC947.01 ; db_xref "SPD:27/27G03" ; systematic_id "SPBC947.01" ; colour "7" ; GO "GO:0016887; ATPase activity
GO:0005524; ATP binding
GO:0006888; ER to Golgi vesicle mediated transport
GO:0051013; microtubule severing
GO:0001578; microtubule bundle formation
GO:0033205; cell cycle cytokinesis
GO:0008568; microtubule-severing ATPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YER047C and YPL074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SPAST and FIGNL1 ortholog; date=20100621 ||| term=disease associated, neurological disorders; date=20100621 ||| term=disease associated, hereditary spastic paraplegia; date=20100621" ; gene "SPBC947.01" ; product "ATP-dependent microtubule severing protein (predicted)" ;
chromosome2 GeneDB CDS 680549 680766 . - . mRNA SPBC947.01 ; colour "7" ;
chromosome2 GeneDB CDS 680814 681222 . - . mRNA SPBC947.01 ; colour "7" ;
chromosome2 GeneDB CDS 681271 682626 . - . mRNA SPBC947.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 680767 680780 . - . misc_feature unknown_454 ; colour "6" ; note "ctaacgccatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 680808 680813 . - . misc_feature unknown_455 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 681223 681237 . - . misc_feature unknown_456 ; colour "6" ; note "ctaaccttgatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 681265 681270 . - . misc_feature unknown_457 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 682625 682673 . - . mRNA SPBC947.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC947.01" ; systematic_id "SPBC947.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 683098 683487 . + . misc_RNA SPNCRNA.323 ; db_xref "PMID:18488015" ; synonym "SPNG1264" ; systematic_id "SPNCRNA.323" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_feature 683288 683387 . + . misc_feature unknown_458 ; note "nominal overlap between PCR product SPBPJ694 and cosmid SPBC947" ;
chromosome2 GeneDB CDS_parts 684143 685360 . + . mRNA SPBPJ4664.01 ; systematic_id "SPBPJ4664.01" ; colour "2" ; gene "dps1 ||| SPBPJ694.01 ||| SPBPJ4664.01" ; Alias "dps1" ; obsolete_name "dps" ; db_xref "SPD:44/44A07" ; synonym "SPBPJ694.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, growth defect, requires antioxidant for growth; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to H202; evidence=TAS; qualifier=deletion; cv=phenotype; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to copper ions; evidence=TAS; cv=phenotype; db_xref=PMID:18808426; date=20081222" ; GO "GO:0032476; decaprenyl diphosphate synthase complex 1
GO:0005743; mitochondrial inner membrane
GO:0008834; di-trans,poly-cis- decaprenylcistransferase activity
GO:0046982; protein heterodimerization activity
GO:0006744; ubiquinone biosynthesis
GO:0016209; antioxidant activity
GO:0019646; aerobic electron transport chain
GO:0006119; oxidative phosphorylation
GO:0070219; cellular sulfide ion homeostasis
GO:0019418; sulphide oxidation" ; primary_name "dps1" ; product "decaprenyl diphosphate synthase subunit Dps1" ; EC_number "2.5.1.-" ;
chromosome2 GeneDB CDS 684143 685117 . + . mRNA SPBPJ4664.01 ; colour "2" ;
chromosome2 GeneDB CDS 685199 685360 . + . mRNA SPBPJ4664.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 685118 685123 . + . misc_feature unknown_459 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB intron 685118 685198 . + . intron SPBPJ4664.01 ; systematic_id "SPBPJ4664.01" ; note "intron confirmed by EST" ;
chromosome2 GeneDB misc_feature 685183 685198 . + . misc_feature unknown_460 ; colour "6" ; note "ctaacatataatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 685287 685384 . + . misc_feature unknown_461 ; note "nominal overlap with SPBPJ694" ;
chromosome2 GeneDB 3'-UTR 685361 685682 . + . mRNA SPBPJ4664.01 ; ID "SPBPJ4664.01" ; systematic_id "SPBPJ4664.01" ; note "mRNA from SPD265" ;
chromosome2 GeneDB 5'-UTR 687347 687715 . + . mRNA SPBPJ4664.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPJ4664.02" ; systematic_id "SPBPJ4664.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 687716 699631 . + . mRNA SPBPJ4664.02 ; systematic_id "SPBPJ4664.02" ; colour "12" ; gene "SPBPJ4664.02" ; note "~250-270 copies of a 12 AA repeat, NSSTPITSSSIL" ; db_xref "SPD:49/49H12" ; GO "GO:0010339; external side of cell wall
GO:0007155; cell adhesion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100104" ; product "cell surface glycoprotein (predicted)" ;
chromosome2 GeneDB CDS 687716 699631 . + . mRNA SPBPJ4664.02 ; colour "12" ;
chromosome2 GeneDB 3'-UTR 699632 699886 . + . mRNA SPBPJ4664.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPJ4664.02" ; systematic_id "SPBPJ4664.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 700291 700363 . + . mRNA SPBPJ4664.03 ; ID "SPBPJ4664.03" ; systematic_id "SPBPJ4664.03" ; note "mRNA from SPAB4296" ;
chromosome2 GeneDB CDS_parts 700364 700556 . + . mRNA SPBPJ4664.03 ; Alias "mfm3" ; systematic_id "SPBPJ4664.03" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=name description, M-factor precursor; cv=name_description; date=20090729" ; GO "GO:0032005; signal transduction during conjugation with cellular fusion
GO:0000772; mating pheromone activity" ; gene "mfm3 ||| SPBPJ4664.03" ; primary_name "mfm3" ; product "M-factor precursor Mfm3" ;
chromosome2 GeneDB CDS 700364 700476 . + . mRNA SPBPJ4664.03 ; colour "2" ;
chromosome2 GeneDB CDS 700544 700556 . + . mRNA SPBPJ4664.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 700477 700482 . + . misc_feature unknown_462 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 700529 700543 . + . misc_feature unknown_463 ; colour "6" ; note "ctaatttcattttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 700557 700700 . + . mRNA SPBPJ4664.03 ; ID "SPBPJ4664.03" ; systematic_id "SPBPJ4664.03" ; note "mRNA from SPAB4296" ;
chromosome2 GeneDB 5'-UTR 701866 701889 . + . mRNA SPBPJ4664.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPJ4664.04" ; systematic_id "SPBPJ4664.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 701890 705513 . + . mRNA SPBPJ4664.04 ; db_xref "SPD:49/49G07" ; systematic_id "SPBPJ4664.04" ; colour "7" ; GO "GO:0030126; COPI vesicle coat
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL145C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPBPJ4664.04" ; product "coatomer alpha subunit (predicted)" ;
chromosome2 GeneDB CDS 701890 705513 . + . mRNA SPBPJ4664.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 705514 705661 . + . mRNA SPBPJ4664.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPJ4664.04" ; systematic_id "SPBPJ4664.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 705932 706666 . + . mRNA SPBPJ4664.05 ; db_xref "SPD:41/41C09" ; systematic_id "SPBPJ4664.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR140W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBPJ4664.05" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 705932 706077 . + . mRNA SPBPJ4664.05 ; colour "10" ;
chromosome2 GeneDB CDS 706141 706666 . + . mRNA SPBPJ4664.05 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 707531 707587 . + . mRNA SPBPJ4664.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPJ4664.06" ; systematic_id "SPBPJ4664.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 707588 711934 . + . mRNA SPBPJ4664.06 ; systematic_id "SPBPJ4664.06" ; colour "2" ; gene "gpt1 ||| SPBPJ4664.06" ; Alias "gpt1" ; db_xref "SPD:49/49H04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8631292; date=19700101 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:8631292; date=20101126 ||| term=gene expression, expression induced by stress; db_xref=PMID:8631292; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YOR336W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=disease associated, glycosylation disorders; date=20070627 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005783; endoplasmic reticulum
GO:0003980; UDP-glucose:glycoprotein glucosyltransferase activity
GO:0006078; 1,6-beta-glucan biosynthesis
GO:0033554; cellular response to stress
GO:0006486; protein glycosylation" ; primary_name "gpt1" ; product "UDP-glucose-glycoprotein glucosyltransferase Gpt1" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB CDS 707588 711934 . + . mRNA SPBPJ4664.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 711935 712372 . + . mRNA SPBPJ4664.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPJ4664.06" ; systematic_id "SPBPJ4664.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 712482 712511 . + . mRNA SPBC119.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.01" ; systematic_id "SPBC119.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 712512 714095 . + . mRNA SPBC119.01 ; systematic_id "SPBC119.01" ; colour "2" ; gene "rpn3 ||| SPBC119.01 ||| SPBPJ4664.07" ; Alias "rpn3" ; db_xref "SPD:50/50H07" ; synonym "SPBPJ4664.07" ; GO "GO:0005634; nucleus
GO:0008541; proteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YER021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpn3" ; product "19S proteasome regulatory subunit Rpn3" ;
chromosome2 GeneDB CDS 712512 712530 . + . mRNA SPBC119.01 ; colour "2" ;
chromosome2 GeneDB CDS 712577 712672 . + . mRNA SPBC119.01 ; colour "2" ;
chromosome2 GeneDB CDS 712717 714095 . + . mRNA SPBC119.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 712531 712536 . + . misc_feature unknown_464 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 712563 712576 . + . misc_feature unknown_465 ; colour "6" ; note "ttaacgttaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 712673 712678 . + . misc_feature unknown_466 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 712703 712716 . + . misc_feature unknown_467 ; colour "6" ; note "ctaacaaggatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 712783 712841 . + . misc_feature unknown_468 ; note "nominal overlap with cosmid c119" ;
chromosome2 GeneDB 3'-UTR 714096 714131 . + . mRNA SPBC119.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.01" ; systematic_id "SPBC119.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 715287 715332 . + . mRNA SPBC119.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.02" ; systematic_id "SPBC119.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 715333 716226 . + . mRNA SPBC119.02 ; systematic_id "SPBC119.02" ; colour "2" ; gene "ubc4 ||| SPBC119.02" ; Alias "ubc4" ; db_xref "SPD:32/32A10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12724408; date=20090605 ||| term=orthologous to S. cerevisiae YDR059C and YBR082C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Cdc13; db_xref=PMID:12724408; date=20100825" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0016567; protein ubiquitination
; cyclin catabolism
GO:0004842; ubiquitin conjugating enzyme activity" ; primary_name "ubc4" ; product "ubiquitin conjugating enzyme Ubc4" ; EC_number "6.3.2.19" ;
chromosome2 GeneDB CDS 715333 715452 . + . mRNA SPBC119.02 ; colour "2" ;
chromosome2 GeneDB CDS 715532 715609 . + . mRNA SPBC119.02 ; colour "2" ;
chromosome2 GeneDB CDS 715981 716226 . + . mRNA SPBC119.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 715453 715458 . + . misc_feature unknown_469 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 715453 715531 . + . intron SPBC119.02 ; systematic_id "SPBC119.02" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 715516 715531 . + . misc_feature unknown_470 ; colour "6" ; note "ctaacatgatatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 715610 715615 . + . misc_feature unknown_471 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 715610 715980 . + . intron SPBC119.02 ; systematic_id "SPBC119.02" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 715963 715980 . + . misc_feature unknown_472 ; colour "6" ; note "ctaacagcatattcgtag, splice branch and acceptor" ;
chromosome2 GeneDB tRNA 717076 717148 . + . tRNA SPBTRNATRP.02 ; systematic_id "SPBTRNATRP.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033423; CCA codon-amino acid adaptor activity" ; gene "SPBTRNATRP.02" ; product "tRNA Tryptophan" ; note "tRNA Trp anticodon CCA, Cove score 65.98" ;
chromosome2 GeneDB 5'-UTR 717888 717965 . + . mRNA SPBC119.03 ; ID "SPBC119.03" ; systematic_id "SPBC119.03" ; note "mRNA from spc05940 2 33" ;
chromosome2 GeneDB CDS_parts 717966 718766 . + . mRNA SPBC119.03 ; db_xref "SPD:10/10B04" ; systematic_id "SPBC119.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human COMT ortholog; date=19700101" ; colour "10" ; gene "SPBC119.03" ; product "human COMT homolog 1" ;
chromosome2 GeneDB CDS 717966 718766 . + . mRNA SPBC119.03 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 718767 718915 . + . mRNA SPBC119.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.03" ; systematic_id "SPBC119.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 719163 719617 . + . misc_RNA SPNCRNA.324 ; db_xref "PMID:18488015" ; synonym "SPNG1268" ; systematic_id "SPNCRNA.324" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 719806 720252 . + . mRNA SPBC119.04 ; systematic_id "SPBC119.04" ; colour "2" ; gene "mei3 ||| SPBC119.04" ; db_xref "SPD:42/42B03" ; Alias "mei3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=target of Pka1; qualifier=phosphorylated_by; db_xref=PMID:12664134; date=20100825" ; primary_name "mei3" ; product "meiosis inducing protein Mei3" ;
chromosome2 GeneDB CDS 719806 720252 . + . mRNA SPBC119.04 ; colour "2" ;
chromosome2 GeneDB misc_RNA 720414 720516 . + . misc_RNA SPNCRNA.325 ; db_xref "PMID:18488015" ; synonym "SPNG1269" ; systematic_id "SPNCRNA.325" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 3'-UTR 721007 721452 . - . mRNA SPBC119.05c ; ID "SPBC119.05c" ; systematic_id "SPBC119.05c" ; note "mRNA from AB011825" ;
chromosome2 GeneDB CDS_parts 721453 722343 . - . mRNA SPBC119.05c ; systematic_id "SPBC119.05c" ; colour "7" ; gene "SPBC119.05c" ; obsolete_name "csh3" ; db_xref "SPD:32/32A09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR136W and YPR154W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030036; actin cytoskeleton organization and biogenesis" ; product "Wiskott-Aldrich syndrome homolog binding protein Lsb1 (predicted)" ;
chromosome2 GeneDB CDS 721453 722343 . - . mRNA SPBC119.05c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 722344 722432 . - . mRNA SPBC119.05c ; ID "SPBC119.05c" ; systematic_id "SPBC119.05c" ; note "mRNA from AB011825" ;
chromosome2 GeneDB 5'-UTR 723535 723758 . + . mRNA SPBC119.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.06" ; systematic_id "SPBC119.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 723759 724550 . + . mRNA SPBC119.06 ; systematic_id "SPBC119.06" ; colour "7" ; gene "sco1 ||| SPBC119.06" ; Alias "sco1" ; db_xref "SPD:10/10A06" ; GO "GO:0005743; mitochondrial inner membrane
GO:0016531; copper chaperone activity
GO:0005507; copper ion binding
GO:0006825; copper ion transport
GO:0008535; cytochrome c oxidase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR037C and YBR024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111" ; primary_name "sco1" ; product "copper chaperone Sco1 (predicted)" ;
chromosome2 GeneDB CDS 723759 724550 . + . mRNA SPBC119.06 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 724551 724912 . + . mRNA SPBC119.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.06" ; systematic_id "SPBC119.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 725343 730646 . + . mRNA SPBC119.07 ; systematic_id "SPBC119.07" ; colour "2" ; gene "ppk19 ||| SPBC119.07" ; Alias "ppk19" ; db_xref "SPD:48/48H02" ; synonym "vps15" ; GO "GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0045324; late endosome to vacuole transport
; retrograde transport, endosome to Golgi" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=20070501 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YBR097W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Ric1; db_xref=PMID:20623139; date=20101005" ; primary_name "ppk19" ; product "serine/threonine protein kinase Ppk19" ;
chromosome2 GeneDB CDS 725343 725428 . + . mRNA SPBC119.07 ; colour "2" ;
chromosome2 GeneDB CDS 725481 725608 . + . mRNA SPBC119.07 ; colour "2" ;
chromosome2 GeneDB CDS 725683 726260 . + . mRNA SPBC119.07 ; colour "2" ;
chromosome2 GeneDB CDS 726318 730646 . + . mRNA SPBC119.07 ; colour "2" ;
chromosome2 GeneDB misc_feature 725429 725434 . + . misc_feature unknown_473 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 725462 725480 . + . misc_feature unknown_474 ; colour "6" ; note "ctaacgttacgaaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 725609 725614 . + . misc_feature unknown_475 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 725667 725682 . + . misc_feature unknown_476 ; colour "6" ; note "ctaactaaaacaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 726261 726266 . + . misc_feature unknown_477 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 726300 726317 . + . misc_feature unknown_478 ; colour "6" ; note "ctaacataatacttctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 730647 730687 . + . mRNA SPBC119.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.07" ; systematic_id "SPBC119.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 730850 730859 . + . mRNA SPBC119.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.08" ; systematic_id "SPBC119.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 730860 732583 . + . mRNA SPBC119.08 ; systematic_id "SPBC119.08" ; colour "2" ; db_xref "SPD:33/33D02" ; Alias "pmk1" ; synonym "spm1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR030C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=gene expression, expression induced by stress; db_xref=PMID:9135147; cv=gene_ex; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Rnc1; db_xref=PMID:17072883; date=20100825 ||| term=pathway, Mkh1-Pek1-Spm1 MAP kinase; cv=pathway; db_xref=PMID:10365961; date=19700101 ||| term=pathway, functions coordinately with the protein kinase C pathway; cv=pathway; db_xref=PMID:8943330; date=19700101" ; GO "GO:0000165; MAPKKK cascade
GO:0031505; cell wall organization and biogenesis
GO:0008360; regulation of cell shape
GO:0005515; protein binding
GO:0006883; sodium ion homeostasis
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0033205; cell cycle cytokinesis
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0033554; cellular response to stress
GO:0004707; MAP kinase activity
GO:0050850; positive regulation of calcium- mediated signaling
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "pmk1" ; product "MAP kinase Pmk1" ;
chromosome2 GeneDB CDS 730860 730925 . + . mRNA SPBC119.08 ; colour "2" ;
chromosome2 GeneDB CDS 731026 731205 . + . mRNA SPBC119.08 ; colour "2" ;
chromosome2 GeneDB CDS 731479 731550 . + . mRNA SPBC119.08 ; colour "2" ;
chromosome2 GeneDB CDS 731633 732583 . + . mRNA SPBC119.08 ; colour "2" ;
chromosome2 GeneDB misc_feature 730926 730931 . + . misc_feature unknown_479 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 731012 731025 . + . misc_feature unknown_480 ; colour "6" ; note "ctaacatagtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 731206 731211 . + . misc_feature unknown_481 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 731467 731478 . + . misc_feature unknown_482 ; colour "6" ; note "ctaacatggtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 731551 731556 . + . misc_feature unknown_483 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 731617 731632 . + . misc_feature unknown_484 ; colour "6" ; note "ctaactattataatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 732584 732887 . + . mRNA SPBC119.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.08" ; systematic_id "SPBC119.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 732998 733674 . - . mRNA SPBC119.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.09c" ; systematic_id "SPBC119.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 733675 734235 . - . mRNA SPBC119.09c ; db_xref "SPD:05/05G10" ; systematic_id "SPBC119.09c" ; colour "7" ; GO "GO:0034620; cellular response to unfolded protein
GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR038W and YLR350W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC119.09c" ; product "ORMDL family protein (predicted)" ;
chromosome2 GeneDB CDS 733675 734235 . - . mRNA SPBC119.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 734234 734700 . - . mRNA SPBC119.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.09c" ; systematic_id "SPBC119.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 734996 735288 . + . mRNA SPBC119.10 ; Alias "asn1" ; ID "SPBC119.10" ; db_xref "PMID:18488015" ; systematic_id "SPBC119.10" ; primary_name "asn1" ; note "predicted from Solexa transcript data SPNG1271" ;
chromosome2 GeneDB CDS_parts 735416 737089 . + . mRNA SPBC119.10 ; systematic_id "SPBC119.10" ; colour "2" ; gene "SPBC119.10 ||| asn1" ; Alias "asn1" ; db_xref "SPD:35/35A07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, growth auxotrophic for asparagine; db_xref=PMID:17622533; date=20100812 ||| term=orthologous to S. cerevisiae YPR145W and YGR124W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=experimental tools, selectable marker, amino acid auxotroph; db_xref=PMID:17622533; cv=ex_tools; date=20070716" ; GO "GO:0006529; asparagine biosynthetic process
GO:0005737; cytoplasm
GO:0004066; asparagine synthase (glutamine- hydrolyzing) activity" ; primary_name "asn1" ; product "asparagine synthetase" ; EC_number "6.3.5.4" ;
chromosome2 GeneDB CDS 735416 737089 . + . mRNA SPBC119.10 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 737090 737288 . + . mRNA SPBC119.10 ; Alias "asn1" ; ID "SPBC119.10" ; db_xref "EMBL:D89101" ; systematic_id "SPBC119.10" ; primary_name "asn1" ;
chromosome2 GeneDB 3'-UTR 737617 737703 . - . mRNA SPBC119.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.11c" ; systematic_id "SPBC119.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 737704 738795 . - . mRNA SPBC119.11c ; systematic_id "SPBC119.11c" ; colour "2" ; gene "pac1 ||| hcs ||| SPBC119.11c" ; Alias "pac1" ; db_xref "SPD:32/32E01" ; synonym "hcs" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0004525; ribonuclease III activity
GO:0031137; regulation of conjugation with cellular fusion
GO:0003723; RNA binding
GO:0016180; snRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR239C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pac1" ; product "double-strand-specific ribonuclease Pac1" ; EC_number "3.1.26.3" ;
chromosome2 GeneDB CDS 737704 738795 . - . mRNA SPBC119.11c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 738796 738906 . - . mRNA SPBC119.11c ; ID "SPBC119.11c" ; systematic_id "SPBC119.11c" ; note "mRNA from spc08133" ;
chromosome2 GeneDB LTR 739738 740096 . + . LTR unknown_485 ; colour "4" ; note "TF1 type" ;
chromosome2 GeneDB 5'-UTR 740257 740274 . + . mRNA SPBC119.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.12" ; systematic_id "SPBC119.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 740275 741480 . + . mRNA SPBC119.12 ; db_xref "SPD:19/19C05" ; systematic_id "SPBC119.12" ; colour "7" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005794; Golgi apparatus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR216C; date=19700101 ||| term=GRIP domain; date=20070716 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC119.12" ; product "Golgi matrix protein (predicted)" ;
chromosome2 GeneDB CDS 740275 741480 . + . mRNA SPBC119.12 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 741481 741876 . + . mRNA SPBC119.12 ; ID "SPBC119.12" ; systematic_id "SPBC119.12" ; note "mRNA from SPD2668" ;
chromosome2 GeneDB 3'-UTR 741905 741962 . - . mRNA SPBC119.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.13c" ; systematic_id "SPBC119.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 741963 743519 . - . mRNA SPBC119.13c ; systematic_id "SPBC119.13c" ; colour "2" ; gene "prp31 ||| SPBC119.13c" ; Alias "prp31" ; db_xref "SPD:33/33B09" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000244; assembly of spliceosomal tri-snRNP
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10871341; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:10871341; date=20100708 ||| term=orthologous to S. cerevisiae YGR091W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp31" ; product "U4/U6 x U5 tri-snRNP complex subunit Prp31" ;
chromosome2 GeneDB CDS 741963 743519 . - . mRNA SPBC119.13c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 743518 743721 . - . mRNA SPBC119.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.13c" ; systematic_id "SPBC119.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 743887 744068 . + . mRNA SPBC119.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.18" ; systematic_id "SPBC119.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 744069 744340 . + . mRNA SPBC119.18 ; db_xref "SPD:51/51F07" ; systematic_id "SPBC119.18" ; colour "7" ; GO "GO:0033108; mitochondrion respiratory chain complex assembly
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL053C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC119.18" ; product "mitochondrial distribution and morphology protein Mdm35 (predicted)" ;
chromosome2 GeneDB CDS 744069 744107 . + . mRNA SPBC119.18 ; colour "7" ;
chromosome2 GeneDB CDS 744170 744340 . + . mRNA SPBC119.18 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 744341 744380 . + . mRNA SPBC119.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.18" ; systematic_id "SPBC119.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 744754 744835 . - . tRNA SPBTRNASER.05 ; obsolete_name "SPCTRNASER.05" ; systematic_id "SPBTRNASER.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033447; AGA codon-amino acid adaptor activity" ; product "tRNA Serine" ; note "tRNA Ser anticodon AGA, Cove score 59.19" ;
chromosome2 GeneDB CDS_parts 746035 747556 . + . mRNA SPBC119.14 ; systematic_id "SPBC119.14" ; colour "2" ; gene "rti1 ||| SPBC119.14" ; Alias "rti1" ; db_xref "SPD:24/24F11" ; synonym "rad22B" ; GO "GO:0000228; nuclear chromosome
GO:0000739; DNA strand annealing activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0000150; recombinase activity
GO:0000730; DNA recombinase assembly
GO:0006302; double-strand break repair
GO:0000711; meiotic DNA repair synthesis
GO:0000724; double-strand break repair via homologous recombination
GO:0003697; single-stranded DNA binding
GO:0051260; protein homooligomerization
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YML032C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rti1" ; product "Rad22 homolog Rti1" ;
chromosome2 GeneDB CDS 746035 746265 . + . mRNA SPBC119.14 ; colour "2" ;
chromosome2 GeneDB CDS 746364 746447 . + . mRNA SPBC119.14 ; colour "2" ;
chromosome2 GeneDB CDS 746601 746780 . + . mRNA SPBC119.14 ; colour "2" ;
chromosome2 GeneDB CDS 746839 747091 . + . mRNA SPBC119.14 ; colour "2" ;
chromosome2 GeneDB CDS 747144 747222 . + . mRNA SPBC119.14 ; colour "2" ;
chromosome2 GeneDB CDS 747268 747556 . + . mRNA SPBC119.14 ; colour "2" ;
chromosome2 GeneDB misc_feature 746266 746271 . + . misc_feature unknown_486 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 746347 746363 . + . misc_feature unknown_487 ; colour "6" ; note "ctaatcattattaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 746448 746453 . + . misc_feature unknown_488 ; colour "6" ; note "gtaaac, splice donor sequence" ;
chromosome2 GeneDB misc_feature 746581 746600 . + . misc_feature unknown_489 ; colour "6" ; note "ctaacaaatggtttttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 746781 746786 . + . misc_feature unknown_490 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 746818 746838 . + . misc_feature unknown_491 ; colour "6" ; note "ctgacagaaatgcaaaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 747092 747097 . + . misc_feature unknown_492 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 747126 747143 . + . misc_feature unknown_493 ; colour "6" ; note "ctaaacataaaaatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 747223 747228 . + . misc_feature unknown_494 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 747257 747267 . + . misc_feature unknown_495 ; colour "6" ; note "ctaactaatag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 747847 747851 . + . mRNA SPBC119.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.15" ; systematic_id "SPBC119.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 747852 749085 . + . mRNA SPBC119.15 ; db_xref "SPD:19/19F09" ; systematic_id "SPBC119.15" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0016887; ATPase activity
GO:0006461; protein complex assembly
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YJR072C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human GPN1 ortholog; date=20100727" ; gene "SPBC119.15" ; product "AAA family ATPase at the interface between RNA polymerase II and chaperone (predicted)" ;
chromosome2 GeneDB CDS 747852 747909 . + . mRNA SPBC119.15 ; colour "7" ;
chromosome2 GeneDB CDS 747984 748137 . + . mRNA SPBC119.15 ; colour "7" ;
chromosome2 GeneDB CDS 748194 749085 . + . mRNA SPBC119.15 ; colour "7" ;
chromosome2 GeneDB misc_feature 747910 747915 . + . misc_feature unknown_496 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 747963 747983 . + . misc_feature unknown_497 ; colour "6" ; note "ctaatcattttcatgtaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 748138 748143 . + . misc_feature unknown_498 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 748181 748193 . + . misc_feature unknown_499 ; colour "6" ; note "ctaattcatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 749086 749113 . + . mRNA SPBC119.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.15" ; systematic_id "SPBC119.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 749222 749244 . - . mRNA SPBC119.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.16c" ; systematic_id "SPBC119.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 749245 750591 . - . mRNA SPBC119.16c ; db_xref "SPD:44/44C08" ; systematic_id "SPBC119.16c" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL047W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; gene "SPBC119.16c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 749245 750591 . - . mRNA SPBC119.16c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 750590 750708 . - . mRNA SPBC119.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.16c" ; systematic_id "SPBC119.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 750762 750785 . + . mRNA SPBC119.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.17" ; systematic_id "SPBC119.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 750786 753815 . + . mRNA SPBC119.17 ; systematic_id "SPBC119.17" ; colour "7" ; gene "SPBC119.17 ||| SPBC577.01" ; db_xref "SPD:47/47G06" ; synonym "SPBC577.01" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0008237; metallopeptidase activity
GO:0006508; proteolysis
GO:0006627; protein processing involved in protein targeting to mitochondrion
GO:0051603; proteolysis involved in cellular protein catabolic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR430C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "mitochondrial metalloendopeptidase (predicted)" ;
chromosome2 GeneDB CDS 750786 750905 . + . mRNA SPBC119.17 ; colour "7" ;
chromosome2 GeneDB CDS 750957 753815 . + . mRNA SPBC119.17 ; colour "7" ;
chromosome2 GeneDB misc_feature 750906 750911 . + . misc_feature unknown_500 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 750942 750956 . + . misc_feature unknown_501 ; colour "6" ; note "ctaactgtttcctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 751740 753481 . + . misc_feature unknown_502 ; note "nominal overlap with cosmid SPBC119 and cosmid SPCBC577" ;
chromosome2 GeneDB 3'-UTR 753816 753898 . + . mRNA SPBC119.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC119.17" ; systematic_id "SPBC119.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 754652 755184 . + . mRNA SPBC577.02 ; systematic_id "SPBC577.02" ; colour "7" ; gene "rpl3801 ||| rpl38-1 ||| SPBC577.02" ; Alias "rpl3801" ; db_xref "SPD:31/31E07" ; synonym "rpl38-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR325C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl3801" ; product "60S ribosomal protein L38 (predicted)" ;
chromosome2 GeneDB CDS 754652 754654 . + . mRNA SPBC577.02 ; colour "7" ;
chromosome2 GeneDB CDS 754784 754970 . + . mRNA SPBC577.02 ; colour "7" ;
chromosome2 GeneDB CDS 755150 755184 . + . mRNA SPBC577.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 754655 754660 . + . misc_feature unknown_503 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 754768 754783 . + . misc_feature unknown_504 ; colour "6" ; note "ctaatgcatgttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 754971 754976 . + . misc_feature unknown_505 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 754971 755149 . + . intron SPBC577.02 ; systematic_id "SPBC577.02" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 755132 755149 . + . misc_feature unknown_506 ; colour "6" ; note "ctaacaagttttctatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 755185 755272 . + . mRNA SPBC577.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.02" ; systematic_id "SPBC577.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 755325 755559 . - . mRNA SPBC577.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.03c" ; systematic_id "SPBC577.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 755560 756283 . - . mRNA SPBC577.03c ; db_xref "SPD:08/08F02" ; systematic_id "SPBC577.03c" ; colour "10" ; GO "GO:0004042; amino-acid N-acetyltransferase activity
GO:0006474; N-terminal protein amino acid acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC577.03c" ; product "GCN5-related N-acetyltransferase (predicted)" ;
chromosome2 GeneDB CDS 755560 756023 . - . mRNA SPBC577.03c ; colour "10" ;
chromosome2 GeneDB CDS 756097 756283 . - . mRNA SPBC577.03c ; colour "10" ;
chromosome2 GeneDB misc_feature 756024 756035 . - . misc_feature unknown_507 ; colour "6" ; note "ctaacgatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 756091 756096 . - . misc_feature unknown_508 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 756282 756538 . - . mRNA SPBC577.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.03c" ; systematic_id "SPBC577.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 756591 756659 . + . mRNA SPBC577.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.04" ; systematic_id "SPBC577.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 756660 757345 . + . mRNA SPBC577.04 ; db_xref "SPD:42/42H11" ; systematic_id "SPBC577.04" ; colour "7" ; GO "GO:0000445; THO complex part of transcription export complex
GO:0006406; mRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human THOC5 ortholog; date=20101013" ; gene "SPBC577.04" ; product "human THOC5 ortholog (predicted)" ;
chromosome2 GeneDB CDS 756660 756973 . + . mRNA SPBC577.04 ; colour "7" ;
chromosome2 GeneDB CDS 757057 757345 . + . mRNA SPBC577.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 756974 756979 . + . misc_feature unknown_509 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 757346 757470 . + . mRNA SPBC577.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.04" ; systematic_id "SPBC577.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 757566 758197 . - . mRNA SPBC577.05c ; systematic_id "SPBC577.05c" ; colour "2" ; gene "rec27 ||| mug41 ||| SPBC577.05c" ; Alias "rec27" ; db_xref "SPD:42/42E10" ; synonym "mug41" ; GO "GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "rec27" ; product "meiotic recombination protein Rec27" ;
chromosome2 GeneDB CDS 757566 757746 . - . mRNA SPBC577.05c ; colour "2" ;
chromosome2 GeneDB CDS 757796 757951 . - . mRNA SPBC577.05c ; colour "2" ;
chromosome2 GeneDB CDS 758130 758197 . - . mRNA SPBC577.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 757747 757763 . - . misc_feature unknown_510 ; colour "6" ; note "ttaacatcaaattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 757790 757795 . - . misc_feature unknown_511 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 757952 757964 . - . misc_feature unknown_512 ; colour "6" ; note "ctaattaaatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 758124 758129 . - . misc_feature unknown_513 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 758351 758407 . - . mRNA SPBC577.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.06c" ; systematic_id "SPBC577.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 758408 764229 . - . mRNA SPBC577.06c ; systematic_id "SPBC577.06c" ; colour "7" ; gene "SPBC577.06c ||| stt4" ; Alias "stt4" ; db_xref "SPD:31/31B11" ; GO "GO:0005739; mitochondrion
GO:0005886; plasma membrane
GO:0004430; 1-phosphatidylinositol 4-kinase activity
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0048017; inositol lipid-mediated signaling
GO:0046854; phosphoinositide phosphorylation
GO:0006646; phosphatidylethanolamine biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR305C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "stt4" ; product "1-phosphatidylinositol 4-kinase Stt4 (predicted)" ; EC_number "2.7.1.67" ;
chromosome2 GeneDB CDS 758408 758421 . - . mRNA SPBC577.06c ; colour "7" ;
chromosome2 GeneDB CDS 758475 759495 . - . mRNA SPBC577.06c ; colour "7" ;
chromosome2 GeneDB CDS 759535 760340 . - . mRNA SPBC577.06c ; colour "7" ;
chromosome2 GeneDB CDS 760382 764166 . - . mRNA SPBC577.06c ; colour "7" ;
chromosome2 GeneDB CDS 764222 764229 . - . mRNA SPBC577.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 758422 758435 . - . misc_feature unknown_514 ; colour "6" ; note "ctaacttttttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 758469 758474 . - . misc_feature unknown_515 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 759496 759508 . - . misc_feature unknown_516 ; colour "6" ; note "ctaacatttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 759529 759534 . - . misc_feature unknown_517 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 760341 760355 . - . misc_feature unknown_518 ; colour "6" ; note "ctaacaatattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 760376 760381 . - . misc_feature unknown_519 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 764167 764180 . - . misc_feature unknown_520 ; colour "6" ; note "ctaattattattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 764216 764221 . - . misc_feature unknown_521 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 764228 764513 . - . mRNA SPBC577.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.06c" ; systematic_id "SPBC577.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 764566 764595 . + . mRNA SPBC577.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.07" ; systematic_id "SPBC577.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 764596 766253 . + . mRNA SPBC577.07 ; systematic_id "SPBC577.07" ; colour "7" ; gene "SPBC577.07 ||| ubp10" ; Alias "ubp10" ; db_xref "SPD:34/34G07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-UBP type; date=19700101 ||| term=orthologous to S. cerevisiae YFR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005634; nucleus
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0004843; ubiquitin-specific protease activity" ; primary_name "ubp10" ; product "ubiquitin C-terminal hydrolase Ubp10 (predicted)" ; reserved_name "ubp10" ;
chromosome2 GeneDB CDS 764596 764784 . + . mRNA SPBC577.07 ; colour "7" ;
chromosome2 GeneDB CDS 764833 765169 . + . mRNA SPBC577.07 ; colour "7" ;
chromosome2 GeneDB CDS 765271 766253 . + . mRNA SPBC577.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 764785 764790 . + . misc_feature unknown_522 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 764819 764832 . + . misc_feature unknown_523 ; colour "6" ; note "ttaacgctaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 765170 765175 . + . misc_feature unknown_524 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 765258 765270 . + . misc_feature unknown_525 ; colour "6" ; note "ctaacacttgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 766254 766326 . + . mRNA SPBC577.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.07" ; systematic_id "SPBC577.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 766381 766553 . - . mRNA SPBC577.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.08c" ; systematic_id "SPBC577.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 766554 767478 . - . mRNA SPBC577.08c ; systematic_id "SPBC577.08c" ; colour "2" ; gene "txl1 ||| SPBC577.08c ||| trx3" ; Alias "txl1" ; db_xref "SPD:12/12H07" ; synonym "trx3" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0015035; protein disulfide oxidoreductase activity
GO:0045454; cell redox homeostasis
GO:0042149; cellular response to glucose starvation
GO:0071448; cellular response to alkyl hydroperoxide
GO:0034599; cellular response to oxidative stress
GO:0010498; proteasomal protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "txl1" ; product "thioredoxin-like I protein Txl1" ;
chromosome2 GeneDB CDS 766554 767202 . - . mRNA SPBC577.08c ; colour "2" ;
chromosome2 GeneDB CDS 767255 767478 . - . mRNA SPBC577.08c ; colour "2" ;
chromosome2 GeneDB misc_feature 767203 767214 . - . misc_feature unknown_526 ; colour "6" ; note "ctaacattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 767249 767254 . - . misc_feature unknown_527 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 767536 767781 . + . mRNA SPBC577.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.09" ; systematic_id "SPBC577.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 767782 769281 . + . mRNA SPBC577.09 ; systematic_id "SPBC577.09" ; colour "2" ; gene "SPBC577.09" ; Alias "ckn1" ; db_xref "SPD:24/24C11" ; GO "GO:0005634; nucleus
GO:0070912; Ddb1-Ckn1 complex
GO:0006283; transcription-coupled nucleotide- excision repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=disease associated, Cockayne syndrome; date=20060721 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR030C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, CocKayNe syndrome 1; db_xref=PMID:18794354; cv=name_description; date=20090909 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18794354; date=20090909 ||| term=DDB-box; db_xref=PMID:18794354; date=20090909 ||| term=phenotype, sensitive to UV; allele=uvde delta; cv=phenotype; db_xref=PMID:18794354; date=20090909" ; primary_name "ckn1" ; product "ERCC-8 DNA repair homolog" ;
chromosome2 GeneDB CDS 767782 767818 . + . mRNA SPBC577.09 ; colour "2" ;
chromosome2 GeneDB CDS 767869 768016 . + . mRNA SPBC577.09 ; colour "2" ;
chromosome2 GeneDB CDS 768080 768187 . + . mRNA SPBC577.09 ; colour "2" ;
chromosome2 GeneDB CDS 768268 768385 . + . mRNA SPBC577.09 ; colour "2" ;
chromosome2 GeneDB CDS 768434 768512 . + . mRNA SPBC577.09 ; colour "2" ;
chromosome2 GeneDB CDS 768557 769281 . + . mRNA SPBC577.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 767819 767824 . + . misc_feature unknown_528 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 767856 767868 . + . misc_feature unknown_529 ; colour "6" ; note "ctcacatttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 768017 768022 . + . misc_feature unknown_530 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 768060 768079 . + . misc_feature unknown_531 ; colour "6" ; note "ttaacaatttctattgacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 768188 768193 . + . misc_feature unknown_532 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 768249 768267 . + . misc_feature unknown_533 ; colour "6" ; note "ctaacttgcggtgttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 768386 768391 . + . misc_feature unknown_534 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 768421 768433 . + . misc_feature unknown_535 ; colour "6" ; note "ctaatattggtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 768513 768518 . + . misc_feature unknown_536 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 768547 768556 . + . misc_feature unknown_537 ; colour "6" ; note "ctaacgatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 769282 769405 . + . mRNA SPBC577.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.09" ; systematic_id "SPBC577.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 769682 770470 . + . mRNA SPBC577.10 ; db_xref "SPD:09/09H09" ; systematic_id "SPBC577.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; gene "SPBC577.10" ; product "20S proteasome component beta 7 (predicted)" ; EC_number "3.4.25.1" ;
chromosome2 GeneDB CDS 769682 770470 . + . mRNA SPBC577.10 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 770471 770726 . + . mRNA SPBC577.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.10" ; systematic_id "SPBC577.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 771318 772347 . + . mRNA SPBC577.11 ; db_xref "SPD:15/15E11" ; systematic_id "SPBC577.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi only; date=20091022 ||| term=species distribution, conserved in Fungi; date=20091022 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091022" ; colour "10" ; gene "SPBC577.11" ; product "DUF3074 family protein" ;
chromosome2 GeneDB CDS 771318 771575 . + . mRNA SPBC577.11 ; colour "10" ;
chromosome2 GeneDB CDS 771756 771855 . + . mRNA SPBC577.11 ; colour "10" ;
chromosome2 GeneDB CDS 771986 772347 . + . mRNA SPBC577.11 ; colour "10" ;
chromosome2 GeneDB misc_feature 771576 771581 . + . misc_feature unknown_538 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 771741 771755 . + . misc_feature unknown_539 ; colour "6" ; note "ctaacaacagcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 771959 771964 . + . misc_feature unknown_540 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 772348 772760 . + . mRNA SPBC577.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.11" ; systematic_id "SPBC577.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 773121 773479 . + . mRNA SPBC577.12 ; ID "SPBC577.12" ; systematic_id "SPBC577.12" ; note "mRNA from AU012552" ;
chromosome2 GeneDB CDS_parts 773480 775395 . + . mRNA SPBC577.12 ; systematic_id "SPBC577.12" ; colour "10" ; gene "SPBC577.12 ||| mug71" ; Alias "mug71" ; db_xref "SPD:37/37A06" ; GO "GO:0005737; cytoplasm
GO:0004521; endoribonuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR143W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ATPBD4 ortholog; date=20100727" ; primary_name "mug71" ; product "endoribonuclease (predicted)" ;
chromosome2 GeneDB CDS 773480 774485 . + . mRNA SPBC577.12 ; colour "10" ;
chromosome2 GeneDB CDS 774581 775395 . + . mRNA SPBC577.12 ; colour "10" ;
chromosome2 GeneDB misc_feature 774486 774491 . + . misc_feature unknown_541 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 774569 774580 . + . misc_feature unknown_542 ; colour "6" ; note "ctaacttcctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 775396 775401 . + . mRNA SPBC577.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.12" ; systematic_id "SPBC577.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 775773 778582 . + . mRNA SPBC577.13 ; systematic_id "SPBC577.13" ; colour "7" ; gene "SPBC577.13 ||| syj2" ; Alias "syj2" ; db_xref "SPD:29/29E03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL106C and YOL065C and YIL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0046856; phosphoinositide dephosphorylation
GO:0006897; endocytosis
GO:0046488; phosphatidylinositol metabolism
GO:0048017; inositol lipid-mediated signaling
GO:0004445; inositol-polyphosphate 5-phosphatase activity" ; primary_name "syj2" ; product "inositol-polyphosphate 5-phosphatase, synaptojanin homolog 2 (predicted)" ; EC_number "3.1.3.36" ;
chromosome2 GeneDB CDS 775773 778006 . + . mRNA SPBC577.13 ; colour "7" ;
chromosome2 GeneDB CDS 778052 778270 . + . mRNA SPBC577.13 ; colour "7" ;
chromosome2 GeneDB CDS 778316 778367 . + . mRNA SPBC577.13 ; colour "7" ;
chromosome2 GeneDB CDS 778418 778582 . + . mRNA SPBC577.13 ; colour "7" ;
chromosome2 GeneDB misc_feature 778007 778012 . + . misc_feature unknown_543 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 778039 778051 . + . misc_feature unknown_544 ; colour "6" ; note "ctgacaaacatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 778271 778276 . + . misc_feature unknown_545 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 778301 778315 . + . misc_feature unknown_546 ; colour "6" ; note "ttaacatggctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 778368 778373 . + . misc_feature unknown_547 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 778402 778417 . + . misc_feature unknown_548 ; colour "6" ; note "ctaaccgaaactttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 778583 778591 . + . mRNA SPBC577.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.13" ; systematic_id "SPBC577.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 778749 779187 . - . mRNA SPBC577.14c ; ID "SPBC577.14c" ; systematic_id "SPBC577.14c" ; note "mRNA from SPD228" ;
chromosome2 GeneDB CDS_parts 779188 779869 . - . mRNA SPBC577.14c ; systematic_id "SPBC577.14c" ; colour "2" ; gene "spa1 ||| spa ||| SPBC577.14c" ; Alias "spa1" ; db_xref "SPD:07/07H08" ; synonym "spa" ; GO "GO:0008073; ornithine decarboxylase inhibitor activity
GO:0006591; ornithine metabolism
GO:0010967; regulation of polyamine biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spa1" ; product "ornithine decarboxylase antizyme with +1 programmed ribosomal frameshift Spa1" ;
chromosome2 GeneDB CDS 779188 779667 . - . mRNA SPBC577.14c ; colour "2" ;
chromosome2 GeneDB CDS 779669 779869 . - . mRNA SPBC577.14c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 779870 779965 . - . mRNA SPBC577.14c ; ID "SPBC577.14c" ; systematic_id "SPBC577.14c" ; note "mRNA from SPD228" ;
chromosome2 GeneDB 3'-UTR 780791 781071 . - . mRNA SPBC577.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.15c" ; systematic_id "SPBC577.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 781072 782262 . - . mRNA SPBC577.15c ; systematic_id "SPBC577.15c" ; colour "2" ; gene "SPBC577.15c ||| sim3" ; Alias "sim3" ; db_xref "SPD:19/19A03" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0034080; DNA replication-independent nucleosome assembly at centromere
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0043486; histone exchange
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLL022C; db_xref=PMID:18158900; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18158900; date=20080104 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Silencng In the Middle of the centromere; date=20100727" ; primary_name "sim3" ; product "NASP family CENP-A chaperone" ;
chromosome2 GeneDB CDS 781072 782262 . - . mRNA SPBC577.15c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 782261 782498 . - . mRNA SPBC577.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC577.15c" ; systematic_id "SPBC577.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 782740 783173 . + . misc_RNA SPNCRNA.327 ; db_xref "PMID:18488015" ; synonym "SPNG1273" ; systematic_id "SPNCRNA.327" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB rRNA 783253 783498 . + . rRNA SPRRNA.31 ; systematic_id "SPRRNA.31" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.31" ; product "5S rRNA" ;
chromosome2 GeneDB misc_feature 783299 783739 . + . misc_feature unknown_549 ; note "nominal overlap with SPBC577 and cosmid SPBC530" ;
chromosome2 GeneDB 5'-UTR 784586 785112 . + . mRNA SPBC530.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.01" ; systematic_id "SPBC530.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 785113 786657 . + . mRNA SPBC530.01 ; systematic_id "SPBC530.01" ; colour "7" ; gene "SPBC530.01 ||| gyp1" ; Alias "gyp1" ; db_xref "SPD:25/25A10" ; GO "GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR070C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gyp1" ; product "GTPase activating protein Gyp1 (predicted)" ; reserved_name "gyp1" ;
chromosome2 GeneDB CDS 785113 786657 . + . mRNA SPBC530.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 786658 787145 . + . mRNA SPBC530.01 ; ID "SPBC530.01" ; systematic_id "SPBC530.01" ; note "mRNA from AU008306" ;
chromosome2 GeneDB CDS_parts 787678 789303 . + . mRNA SPBC530.02 ; db_xref "SPD:45/45D09" ; systematic_id "SPBC530.02" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC11D3.05 and SPCC794.04C; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC530.02" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 787678 789303 . + . mRNA SPBC530.02 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 789555 789839 . - . mRNA SPBC530.16 ; db_xref "PMID:21270388" ; systematic_id "SPBC530.16" ;
chromosome2 GeneDB CDS_parts 789840 790240 . - . mRNA SPBC530.16 ; Alias "ksh1" ; synonym "new21" ; systematic_id "SPBC530.16" ; colour "7" ; controlled_curation "term=orthologous to S. cerevisiae YNL024C-A; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=conserved in Eukaryotes; date=20090721 ||| term=conserved in Vertebrates; date=20090721 ||| term=conserved in Metazoa; date=20090721 ||| term=conserved in Eukaryotes only; date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:21270388; date=20110131" ; primary_name "ksh1" ; product "DUF1242 family protein, secretory pathway component Ksh1" ;
chromosome2 GeneDB CDS 789840 789896 . - . mRNA SPBC530.16 ; colour "7" ;
chromosome2 GeneDB CDS 789966 790017 . - . mRNA SPBC530.16 ; colour "7" ;
chromosome2 GeneDB CDS 790090 790199 . - . mRNA SPBC530.16 ; colour "7" ;
chromosome2 GeneDB CDS 790238 790240 . - . mRNA SPBC530.16 ; colour "7" ;
chromosome2 GeneDB intron 789897 789965 . - . intron unknown_550 ; db_xref "PMID:21270388" ;
chromosome2 GeneDB intron 790018 790089 . - . intron unknown_551 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome2 GeneDB intron 790200 790237 . - . intron unknown_552 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome2 GeneDB 5'-UTR 790241 790294 . - . mRNA SPBC530.16 ; db_xref "PMID:21270388" ; systematic_id "SPBC530.16" ;
chromosome2 GeneDB 3'-UTR 790856 791258 . - . mRNA SPBC530.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.03c" ; systematic_id "SPBC530.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 791259 791879 . - . mRNA SPBC530.03c ; systematic_id "SPBC530.03c" ; colour "7" ; gene "bag102 ||| bag1-b ||| SPBC530.03c" ; note "budding yeast presumed ortholog YIL016W does not have N-terminal ubiquitin domain" ; Alias "bag102" ; db_xref "SPD:07/07A05" ; synonym "bag1-b" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL016W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006457; protein folding" ; primary_name "bag102" ; product "BAG family molecular chaperone regulator Bag102 (predicted)" ;
chromosome2 GeneDB CDS 791259 791879 . - . mRNA SPBC530.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 791878 792065 . - . mRNA SPBC530.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.03c" ; systematic_id "SPBC530.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 793261 795057 . + . mRNA SPBC530.04 ; systematic_id "SPBC530.04" ; colour "2" ; gene "mod5 ||| SPBC530.04" ; Alias "mod5" ; db_xref "SPD:36/36D07" ; GO "GO:0051285; cell cortex of cell tip
GO:0031234; extrinsic to internal side of plasma membrane
GO:0043495; protein anchor
GO:0034613; cellular protein localization
GO:0007163; establishment and/or maintenance of cell polarity
GO: SF 3077846; establishment or maintenance of cell polarity resulting in cell shape" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12789340; date=19700101 ||| term=; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=modification, prenylated; cv=pt_mod; db_xref=PMID:12789340; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mod5" ; product "Tea1 anchoring protein Mod5" ;
chromosome2 GeneDB CDS 793261 793320 . + . mRNA SPBC530.04 ; colour "2" ;
chromosome2 GeneDB CDS 793549 795057 . + . mRNA SPBC530.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 793321 793326 . + . misc_feature unknown_553 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 793538 793548 . + . misc_feature unknown_554 ; colour "6" ; note "ttaatgattag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 796302 796639 . + . mRNA SPBC530.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.05" ; systematic_id "SPBC530.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 796640 798871 . + . mRNA SPBC530.05 ; db_xref "SPD:38/38B01" ; systematic_id "SPBC530.05" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC530.05" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB CDS 796640 798871 . + . mRNA SPBC530.05 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 798872 798994 . + . mRNA SPBC530.05 ; ID "SPBC530.05" ; systematic_id "SPBC530.05" ; note "mRNA from AU009800" ;
chromosome2 GeneDB 3'-UTR 798995 799141 . - . mRNA SPBC530.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.06c" ; systematic_id "SPBC530.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 799142 802851 . - . mRNA SPBC530.06c ; db_xref "SPD:39/39C04" ; systematic_id "SPBC530.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, frameshifted; cv=warning; date=20100222" ; colour "7" ; GO "GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation" ; gene "SPBC530.06c" ; product "translation initiation factor eIF3 alpha subunit (p135) (predicted)" ;
chromosome2 GeneDB CDS 799142 800838 . - . mRNA SPBC530.06c ; colour "7" ;
chromosome2 GeneDB CDS 800840 802651 . - . mRNA SPBC530.06c ; colour "7" ;
chromosome2 GeneDB CDS 802839 802851 . - . mRNA SPBC530.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 802652 802675 . - . misc_feature unknown_555 ; colour "6" ; note "ctaatacacatgttatatcttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 802833 802838 . - . misc_feature unknown_556 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 802850 802902 . - . mRNA SPBC530.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.06c" ; systematic_id "SPBC530.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 804330 804364 . - . mRNA SPBC530.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.07c" ; systematic_id "SPBC530.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 804365 805093 . - . mRNA SPBC530.07c ; db_xref "SPD:08/08F11" ; systematic_id "SPBC530.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=TENA/THI domain; date=20070913" ; colour "10" ; gene "SPBC530.07c" ; product "TENA/THI family protein" ;
chromosome2 GeneDB CDS 804365 805093 . - . mRNA SPBC530.07c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 805092 805653 . - . mRNA SPBC530.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.07c" ; systematic_id "SPBC530.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 806148 806833 . + . mRNA SPBC530.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.08" ; systematic_id "SPBC530.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 806834 809281 . + . mRNA SPBC530.08 ; db_xref "SPD:28/28G07" ; systematic_id "SPBC530.08" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=misc functional group, membrane- tethered transcription factor; qualifier=predicted; db_xref=PMID:11790253; cv=m_f_g; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC530.08" ; product "membrane-tethered transcription factor (predicted)" ;
chromosome2 GeneDB CDS 806834 809281 . + . mRNA SPBC530.08 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 809282 809337 . + . mRNA SPBC530.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.08" ; systematic_id "SPBC530.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 809447 809524 . - . mRNA SPBC530.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.09c" ; systematic_id "SPBC530.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 809525 810499 . - . mRNA SPBC530.09c ; db_xref "SPD:14/14A01" ; systematic_id "SPBC530.09c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005770; late endosome
GO:0007034; vacuolar transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR079W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC530.09c" ; product "cation dependent mannose-6-phosphate cargo receptor (predicted)" ;
chromosome2 GeneDB CDS 809525 809650 . - . mRNA SPBC530.09c ; colour "7" ;
chromosome2 GeneDB CDS 809735 810499 . - . mRNA SPBC530.09c ; colour "7" ;
chromosome2 GeneDB misc_feature 809651 809668 . - . misc_feature unknown_557 ; colour "6" ; note "ctaacagttataatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 809729 809734 . - . misc_feature unknown_558 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 810498 810713 . - . mRNA SPBC530.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.09c" ; systematic_id "SPBC530.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 811060 811412 . - . mRNA SPBC530.10c ; Alias "anc1" ; ID "SPBC530.10c" ; systematic_id "SPBC530.10c" ; primary_name "anc1" ; note "mRNA from AU009320" ;
chromosome2 GeneDB CDS_parts 811413 812381 . - . mRNA SPBC530.10c ; systematic_id "SPBC530.10c" ; colour "2" ; gene "anc1 ||| SPBC530.10c" ; Alias "anc1" ; db_xref "SPD:32/32B08" ; GO "GO:0005743; mitochondrial inner membrane
GO:0005471; ATP:ADP antiporter activity
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YMR056C and YBL030C and YBR085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "anc1" ; product "mitochondrial adenine nucleotide carrier Anc1" ;
chromosome2 GeneDB CDS 811413 812381 . - . mRNA SPBC530.10c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 812382 812577 . - . mRNA SPBC530.10c ; Alias "anc1" ; ID "SPBC530.10c" ; db_xref "EMBL:D89102" ; systematic_id "SPBC530.10c" ; primary_name "anc1" ;
chromosome2 GeneDB misc_RNA 813467 813747 . + . misc_RNA SPNCRNA.328 ; db_xref "PMID:18488015" ; synonym "SPNG1280" ; systematic_id "SPNCRNA.328" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 3'-UTR 814506 814818 . - . mRNA SPBC530.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.11c" ; systematic_id "SPBC530.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 814819 817469 . - . mRNA SPBC530.11c ; db_xref "SPD:38/38G09" ; systematic_id "SPBC530.11c" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC1327.01C and SPAPB1A11.04C; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC530.11c" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB CDS 814819 817143 . - . mRNA SPBC530.11c ; colour "7" ;
chromosome2 GeneDB CDS 817199 817279 . - . mRNA SPBC530.11c ; colour "7" ;
chromosome2 GeneDB CDS 817416 817469 . - . mRNA SPBC530.11c ; colour "7" ;
chromosome2 GeneDB misc_feature 817144 817156 . - . misc_feature unknown_559 ; colour "6" ; note "ctaattgccatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 817193 817198 . - . misc_feature unknown_560 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 817280 817296 . - . misc_feature unknown_561 ; colour "6" ; note "ctgacctatttggatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 817410 817415 . - . misc_feature unknown_562 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 817468 819511 . - . mRNA SPBC530.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.11c" ; systematic_id "SPBC530.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 817469 820490 . + . misc_feature unknown_563 ; colour "3" ; note "low complexity gene-free region containing single tRNA" ;
chromosome2 GeneDB tRNA 820491 820562 . + . tRNA SPBTRNAGLU.05 ; systematic_id "SPBTRNAGLU.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033418; CTC codon-amino acid adaptor activity" ; gene "SPBTRNAGLU.05" ; product "tRNA Glutamic acid" ; note "tRNA Glu anticodon CTC, Cove score 59.76" ;
chromosome2 GeneDB 3'-UTR 820832 821280 . - . mRNA SPBC530.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.12c" ; systematic_id "SPBC530.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 821281 823092 . - . mRNA SPBC530.12c ; systematic_id "SPBC530.12c" ; colour "2" ; gene "pdf1 ||| SPBC530.12c" ; Alias "pdf1" ; obsolete_name "yhc1" ; db_xref "SPD:36/36F01" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0047874; dolichyldiphosphatase activity
GO:0008474; palmitoyl-(protein) hydrolase activity
GO:0006885; regulation of pH
GO:0030148; sphingolipid biosynthesis
GO:0007035; vacuolar acidification
GO:0002084; protein depalmitoylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Batten's disease; qualifier=N_term; date=20060825 ||| term=modification, proteolytic cleavage; db_xref=PMID:15075260; cv=pt_mod; residue=ARG354; date=20060825 ||| term=genome organization, tandem fusion protein; db_xref=PMID:15075260; cv=genome_org; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; evidence=ISS; cv=genome_org; date=20060825 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15075260; date=20060825 ||| term=orthologous to S. cerevisiae YGR036C (C-term); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091123 ||| term=human PPT1 ortholog (N term); date=20101012 ||| term=complementation, functionally complemented by human PPT1; db_xref=PMID:15075260; date=20101012" ; primary_name "pdf1" ; product "palmitoyl protein thioesterase-dolichol pyrophosphate phosphatase fusion 1" ; EC_number "3.1.2.22 ||| 3.6.1.-" ;
chromosome2 GeneDB CDS 821281 823092 . - . mRNA SPBC530.12c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 823091 823141 . - . mRNA SPBC530.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.12c" ; systematic_id "SPBC530.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 824354 824373 . + . mRNA SPBC530.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.13" ; systematic_id "SPBC530.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 824374 825747 . + . mRNA SPBC530.13 ; systematic_id "SPBC530.13" ; colour "2" ; gene "SPBC530.13" ; Alias "lsc1" ; db_xref "SPD:21/21C08" ; GO "GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0031124; mRNA 3'-end processing
GO:0045903; positive regulation of translational fidelity
GO:0006468; protein amino acid phosphorylation
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0032806; carboxy-terminal domain protein kinase complex
GO:0032806; carboxy-terminal domain protein kinase complex
GO:0005515; protein binding
GO:0005634; nucleus
GO:0070816; phosphorlyation of RNA polymerase II C- terminal domain
GO:0031565; cytokinesis checkpoint
GO:0031031; positive regulation of septation initiation signaling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YJL006C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Rpb1; db_xref=PMID:17502918; date=20100222" ; primary_name "lsc1" ; product "Lsk1 associated cyclin" ;
chromosome2 GeneDB CDS 824374 824534 . + . mRNA SPBC530.13 ; colour "2" ;
chromosome2 GeneDB CDS 824579 824660 . + . mRNA SPBC530.13 ; colour "2" ;
chromosome2 GeneDB CDS 824874 824999 . + . mRNA SPBC530.13 ; colour "2" ;
chromosome2 GeneDB CDS 825083 825188 . + . mRNA SPBC530.13 ; colour "2" ;
chromosome2 GeneDB CDS 825245 825747 . + . mRNA SPBC530.13 ; colour "2" ;
chromosome2 GeneDB misc_feature 824535 824540 . + . misc_feature unknown_564 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 824564 824578 . + . misc_feature unknown_565 ; colour "6" ; note "ctaacttttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 824661 824666 . + . misc_feature unknown_566 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 824861 824873 . + . misc_feature unknown_567 ; colour "6" ; note "ctaacacatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 825000 825005 . + . misc_feature unknown_568 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 825065 825082 . + . misc_feature unknown_569 ; colour "6" ; note "ctaatcgaagagaacaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 825189 825194 . + . misc_feature unknown_570 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 825230 825244 . + . misc_feature unknown_571 ; colour "6" ; note "ctaatttactttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 825748 825870 . + . mRNA SPBC530.13 ; ID "SPBC530.13" ; systematic_id "SPBC530.13" ; note "mRNA from spc12132" ;
chromosome2 GeneDB 3'-UTR 826000 826178 . - . mRNA SPBC530.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.14c" ; systematic_id "SPBC530.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 826179 827813 . - . mRNA SPBC530.14c ; systematic_id "SPBC530.14c" ; colour "2" ; gene "dsk1 ||| SPBC530.14c" ; Alias "dsk1" ; db_xref "SPD:33/33C06" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0007243; protein kinase cascade
GO:0048024; regulation of nuclear mRNA splicing, via spliceosome
GO:0007346; regulation of progression through mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8485317; date=19700101 ||| term=complementation, functionally complemented by human SRPK1; cv=complementation; date=19700101 ||| term=orthologous to S. cerevisiae YMR216C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Srp1; db_xref=PMID:10629038; date=20100825 ||| term=target is Srp2; db_xref=PMID:10629038; date=20100825 ||| term=target is Prp2; db_xref=PMID:9488736; date=20100825" ; primary_name "dsk1" ; product "SR protein-specific kinase Dsk1" ;
chromosome2 GeneDB CDS 826179 827813 . - . mRNA SPBC530.14c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 827812 827925 . - . mRNA SPBC530.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.14c" ; systematic_id "SPBC530.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 828642 829090 . - . mRNA SPBC530.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.15c" ; systematic_id "SPBC530.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 829091 830641 . - . mRNA SPBC530.15c ; systematic_id "SPBC530.15c" ; colour "7" ; gene "SPBC530.15c ||| SPBC661.01" ; db_xref "SPD:25/25B05" ; synonym "SPBC661.01" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; product "spermidine family transporter (predicted)" ;
chromosome2 GeneDB CDS 829091 830641 . - . mRNA SPBC530.15c ; colour "7" ;
chromosome2 GeneDB misc_feature 829293 830141 . + . misc_feature unknown_572 ; note "nominal overlap between cosmid SPBC661 and SPBC530" ;
chromosome2 GeneDB 5'-UTR 830640 831336 . - . mRNA SPBC530.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC530.15c" ; systematic_id "SPBC530.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 831066 831792 . + . misc_feature unknown_573 ; note "nominal overlap between cosmid SPBC36 and SPBC661" ;
chromosome2 GeneDB misc_RNA 831524 832704 . + . misc_RNA SPNCRNA.329 ; db_xref "PMID:18488015" ; synonym "SPNG1289" ; systematic_id "SPNCRNA.329" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 3'-UTR 832985 833161 . - . mRNA SPBC36.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.01c" ; systematic_id "SPBC36.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 833162 834904 . - . mRNA SPBC36.01c ; db_xref "SPD:45/45G02" ; systematic_id "SPBC36.01c" ; colour "7" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC36.01c" ; product "spermidine family transporter (predicted)" ;
chromosome2 GeneDB CDS 833162 834904 . - . mRNA SPBC36.01c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 834903 835352 . - . mRNA SPBC36.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.01c" ; systematic_id "SPBC36.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 835871 836243 . + . misc_RNA SPNCRNA.34 ; Alias "prl34" ; db_xref "PMID:12597277 ||| EMBL:AB084846" ; systematic_id "SPNCRNA.34" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl34" ; gene "prl34 ||| SPNCRNA.34" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB CDS_parts 837552 839285 . - . mRNA SPBC36.02c ; db_xref "SPD:35/35G07" ; systematic_id "SPBC36.02c" ; colour "7" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC36.02c" ; product "spermidine family transporter (predicted)" ;
chromosome2 GeneDB CDS 837552 839285 . - . mRNA SPBC36.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 839284 840579 . - . mRNA SPBC36.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.02c" ; systematic_id "SPBC36.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 839305 843526 . + . misc_feature unknown_574 ; colour "3" ; note "low complexity gene-free region" ;
chromosome2 GeneDB misc_feature 839956 841332 . + . misc_feature unknown_575 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1292" ;
chromosome2 GeneDB misc_feature 841445 842844 . + . misc_feature unknown_576 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1294" ;
chromosome2 GeneDB 3'-UTR 843106 843507 . - . mRNA SPBC36.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.03c" ; systematic_id "SPBC36.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 843508 845124 . - . mRNA SPBC36.03c ; db_xref "SPD:45/45D06" ; systematic_id "SPBC36.03c" ; colour "7" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC36.03c" ; product "spermidine family transporter (predicted)" ;
chromosome2 GeneDB CDS 843508 845124 . - . mRNA SPBC36.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 845123 845527 . - . mRNA SPBC36.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.03c" ; systematic_id "SPBC36.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 846705 847051 . - . LTR unknown_577 ; colour "4" ; note "TF2 type lone LTR" ;
chromosome2 GeneDB 5'-UTR 847946 847984 . + . mRNA SPBC36.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.04" ; systematic_id "SPBC36.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 847985 849185 . + . mRNA SPBC36.04 ; systematic_id "SPBC36.04" ; colour "2" ; gene "cys11 ||| cys1a ||| SPBC36.04" ; Alias "cys11" ; db_xref "SPD:19/19C02" ; synonym "cys1a" ; GO "GO:0019344; cysteine biosynthesis
GO:0004124; cysteine synthase activity
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cys11" ; product "cysteine synthase" ; EC_number "2.5.1.47" ;
chromosome2 GeneDB CDS 847985 848117 . + . mRNA SPBC36.04 ; colour "2" ;
chromosome2 GeneDB CDS 848263 849185 . + . mRNA SPBC36.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 848118 848123 . + . misc_feature unknown_578 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 848118 848262 . + . intron SPBC36.04 ; systematic_id "SPBC36.04" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 848243 848262 . + . misc_feature unknown_579 ; colour "6" ; note "ctaattgcaaattttttaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 849186 849321 . + . mRNA SPBC36.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.04" ; systematic_id "SPBC36.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 849375 849508 . - . mRNA SPBC36.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.05c" ; systematic_id "SPBC36.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 849509 851358 . - . mRNA SPBC36.05c ; systematic_id "SPBC36.05c" ; colour "2" ; gene "clr6 ||| SPBC36.05c" ; db_xref "SPD:40/40G04" ; Alias "clr6" ; GO "GO:0033698; Clr6 histone deacetylase complex I/I'
GO:0032221; Clr6 histone deacetylase complex II'
GO:0032221; Clr6 histone deacetylase complex
GO:0070210; Rpd3L-Expanded
GO:0000790; nuclear chromatin
GO:0032129; histone deacetylase activity (H3-K9 specific)
GO:0004407; histone deacetylase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0030261; chromosome condensation
GO:0000070; mitotic sister chromatid segregation
GO:0016575; histone deacetylation
GO:0006357; regulation of transcription from polymerase II promoter
GO:0006338; chromatin remodeling
GO:0051570; regulation of histone H3-K9 methylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11884604; date=19700101 ||| term=phenotype, growth defect, normal growth with ammonia nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=phenotype, growth defect, slow growth with proline nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=orthologous to S. cerevisiae YNL330C; date=19700101 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16079916; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=gene expression, transcriptionally activates per1; db_xref=PMID:20404084; date=20100504 ||| term=name description, Cryptic Loci Regulator; db_xref=PMID:9755190; date=20100318" ; primary_name "clr6" ; product "histone deacetylase (class I) Clr6" ;
chromosome2 GeneDB CDS 849509 849588 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 849640 849698 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 849746 849854 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 849895 850035 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 850080 850188 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 850234 850326 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 850373 850607 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 850663 850708 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 850799 850842 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 850885 850915 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 850959 851076 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 851119 851169 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 851215 851276 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB CDS 851319 851358 . - . mRNA SPBC36.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 849589 849610 . - . misc_feature unknown_580 ; colour "6" ; note "ctaacaaatactcttacattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 849634 849639 . - . misc_feature unknown_581 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 849699 849712 . - . misc_feature unknown_582 ; colour "6" ; note "ctgaccaaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 849740 849745 . - . misc_feature unknown_583 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 849855 849868 . - . misc_feature unknown_584 ; colour "6" ; note "ttaacccatccaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 849889 849894 . - . misc_feature unknown_585 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 850036 850052 . - . misc_feature unknown_586 ; colour "6" ; note "ctaattcccctcaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 850074 850079 . - . misc_feature unknown_587 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 850189 850205 . - . misc_feature unknown_588 ; colour "6" ; note "ctaacaatctgaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 850228 850233 . - . misc_feature unknown_589 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 850327 850338 . - . misc_feature unknown_590 ; colour "6" ; note "ctaatattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 850367 850372 . - . misc_feature unknown_591 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 850608 850624 . - . misc_feature unknown_592 ; colour "6" ; note "ctaaccacttaattaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 850657 850662 . - . misc_feature unknown_593 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 850709 850723 . - . misc_feature unknown_594 ; colour "6" ; note "ctaacattggtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 850793 850798 . - . misc_feature unknown_595 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 850843 850857 . - . misc_feature unknown_596 ; colour "6" ; note "ctaacaattgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 850879 850884 . - . misc_feature unknown_597 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 850916 850931 . - . misc_feature unknown_598 ; colour "6" ; note "ataaccgtgattttag, splice branch and acceptor -devia tion from branch consensus confirmed by homology" ;
chromosome2 GeneDB misc_feature 850953 850958 . - . misc_feature unknown_599 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 851077 851093 . - . misc_feature unknown_600 ; colour "6" ; note "ctaataaagtatacaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 851113 851118 . - . misc_feature unknown_601 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 851170 851182 . - . misc_feature unknown_602 ; colour "6" ; note "ttaacctacttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 851209 851214 . - . misc_feature unknown_603 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 851277 851292 . - . misc_feature unknown_604 ; colour "6" ; note "ctaatttttgaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 851313 851318 . - . misc_feature unknown_605 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 851357 851470 . - . mRNA SPBC36.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.05c" ; systematic_id "SPBC36.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 851852 852024 . - . mRNA SPBC36.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.06c" ; systematic_id "SPBC36.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 852025 853237 . - . mRNA SPBC36.06c ; systematic_id "SPBC36.06c" ; colour "2" ; gene "spo9 ||| SPBC36.06c" ; note "Fps1 appears to have YJL167W has retained the functions YPL069C, Spo9 (Fps1 paralog) appears to have farnesyltransferase like S. cerevisiae BTS1 YPL069C which does not have a direct ortholog in fission yeast" ; Alias "spo9" ; db_xref "SPD:22/22B05" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL167W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17596513; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005515; protein binding
GO:0004660; protein farnesyltransferase activity
GO:0006696; ergosterol biosynthetic process
GO:0018342; protein prenylation
GO:0030437; sporulation (sensu Fungi)" ; primary_name "spo9" ; product "farnesyl pyrophosphate synthetase" ; EC_number "2.5.1.1" ;
chromosome2 GeneDB CDS 852025 852606 . - . mRNA SPBC36.06c ; colour "2" ;
chromosome2 GeneDB CDS 852647 852847 . - . mRNA SPBC36.06c ; colour "2" ;
chromosome2 GeneDB CDS 852916 853053 . - . mRNA SPBC36.06c ; colour "2" ;
chromosome2 GeneDB CDS 853103 853237 . - . mRNA SPBC36.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 852607 852626 . - . misc_feature unknown_606 ; colour "6" ; note "ctaaaaagcttactttcaag, splice branch and acceptor" ;
chromosome2 GeneDB intron 852607 852646 . - . intron SPBC36.06c ; systematic_id "SPBC36.06c" ; note "comfirmed by mRNA" ;
chromosome2 GeneDB misc_feature 852641 852646 . - . misc_feature unknown_607 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 852848 852862 . - . misc_feature unknown_608 ; colour "6" ; note "ctgacggatgttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 852910 852915 . - . misc_feature unknown_609 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 853054 853068 . - . misc_feature unknown_610 ; colour "6" ; note "ctaaccttcatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 853097 853102 . - . misc_feature unknown_611 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 853236 853559 . - . mRNA SPBC36.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.06c" ; systematic_id "SPBC36.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 853612 853630 . + . mRNA SPBC36.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.07" ; systematic_id "SPBC36.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 853631 857392 . + . mRNA SPBC36.07 ; systematic_id "SPBC36.07" ; colour "7" ; gene "SPBC36.07 ||| iki3" ; Alias "iki3" ; db_xref "SPD:48/48E10" ; GO "GO:0033588; Elongator holoenzyme complex
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, familial dysautonomia; date=20061212 ||| term=orthologous to S. cerevisiae YLR384C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human IKBKAP ortholog; date=20100127" ; primary_name "iki3" ; product "elongator subunit Iki3 (predicted)" ;
chromosome2 GeneDB CDS 853631 857392 . + . mRNA SPBC36.07 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 857393 857463 . + . mRNA SPBC36.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.07" ; systematic_id "SPBC36.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 857518 857530 . - . mRNA SPBC36.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.08c" ; systematic_id "SPBC36.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 857531 858219 . - . mRNA SPBC36.08c ; systematic_id "SPBC36.08c" ; colour "7" ; gene "SPBC36.08c ||| cog2" ; note "candidate S. cerevisiae COG2 ortholog?" ; Alias "cog2" ; db_xref "SPD:08/08A03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR120C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0000301; retrograde transport, vesicle recycling within Golgi
GO:0017119; Golgi transport complex" ; primary_name "cog2" ; product "Golgi transport complex subunit Cog2 (predicted)" ;
chromosome2 GeneDB CDS 857531 857710 . - . mRNA SPBC36.08c ; colour "7" ;
chromosome2 GeneDB CDS 857762 857842 . - . mRNA SPBC36.08c ; colour "7" ;
chromosome2 GeneDB CDS 857905 858219 . - . mRNA SPBC36.08c ; colour "7" ;
chromosome2 GeneDB intron 858015 858069 . - . intron SPBC36.08c ; systematic_id "SPBC36.08c" ;
chromosome2 GeneDB 5'-UTR 858218 858341 . - . mRNA SPBC36.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.08c" ; systematic_id "SPBC36.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 858488 860073 . + . mRNA SPBC36.09 ; systematic_id "SPBC36.09" ; colour "2" ; gene "sap61 ||| SPBC36.09" ; Alias "sap61" ; db_xref "SPD:25/25E08" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YDL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sap61" ; product "U2 snRNP-associated protein sap61" ;
chromosome2 GeneDB CDS 858488 858687 . + . mRNA SPBC36.09 ; colour "2" ;
chromosome2 GeneDB CDS 858740 859884 . + . mRNA SPBC36.09 ; colour "2" ;
chromosome2 GeneDB CDS 859940 860073 . + . mRNA SPBC36.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 858688 858693 . + . misc_feature unknown_612 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 858722 858739 . + . misc_feature unknown_613 ; colour "6" ; note "ctaacttgaattcgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 859885 859890 . + . misc_feature unknown_614 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 859923 859939 . + . misc_feature unknown_615 ; colour "6" ; note "ctaacgaaaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 860074 860490 . + . mRNA SPBC36.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.09" ; systematic_id "SPBC36.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 860928 861230 . + . mRNA SPBC36.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.10" ; systematic_id "SPBC36.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 861231 861785 . + . mRNA SPBC36.10 ; db_xref "SPD:05/05G01" ; systematic_id "SPBC36.10" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005739; mitochondrion
GO:0005758; mitochondrial intermembrane space
GO:0006626; protein targeting to mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR168C and YDR185C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC36.10" ; product "mitochondrial intermembrane space protein sorting protein (predicted)" ;
chromosome2 GeneDB CDS 861231 861785 . + . mRNA SPBC36.10 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 861786 862356 . + . mRNA SPBC36.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.10" ; systematic_id "SPBC36.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 862635 863273 . + . mRNA SPBC36.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.11" ; systematic_id "SPBC36.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 863274 864305 . + . mRNA SPBC36.11 ; db_xref "SPD:15/15F04" ; systematic_id "SPBC36.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC36.11" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 863274 864305 . + . mRNA SPBC36.11 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 864306 864669 . + . mRNA SPBC36.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36.11" ; systematic_id "SPBC36.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 864756 865994 . - . mRNA SPBC36.12c ; systematic_id "SPBC36.12c" ; colour "2" ; gene "git7 ||| SPBC36.12c" ; Alias "git7" ; obsolete_name "SPBC713.01c" ; db_xref "SPD:22/22A07" ; GO "GO:0045014; negative regulation of transcription by glucose
GO:0007190; adenylate cyclase activation
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0031505; cell wall organization and biogenesis
GO:0007188; G-protein signalling coupled to cAMP nucleotide second messenger" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12456004; date=19700101 ||| term=phenotype, sensitive to benomyl; cv=phenotype; db_xref=PMID:12456004; date=19700101 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505 ||| term=phenotype, cell morphology, elongated and multiseptate; allele=it7-235; db_xref=PMID:12456004; date=20100727 ||| term=CS domain; date=19700101 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR057W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505" ; primary_name "git7" ; product "SGT1-like protein Git7" ;
chromosome2 GeneDB CDS 864756 865244 . - . mRNA SPBC36.12c ; colour "2" ;
chromosome2 GeneDB CDS 865288 865681 . - . mRNA SPBC36.12c ; colour "2" ;
chromosome2 GeneDB CDS 865738 865994 . - . mRNA SPBC36.12c ; colour "2" ;
chromosome2 GeneDB misc_feature 864792 866605 . + . misc_feature unknown_616 ; note "nominal overlap with SPBC36 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 865245 865257 . - . misc_feature unknown_617 ; colour "6" ; note "ctaaccattttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 865245 865287 . - . intron SPBC36.12c ; systematic_id "SPBC36.12c" ; note "confirmed by C hoffman, personal communication" ;
chromosome2 GeneDB misc_feature 865282 865287 . - . misc_feature unknown_618 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 865682 865698 . - . misc_feature unknown_619 ; colour "6" ; note "ctgactatgttttacag, splice branch and acceptor" ;
chromosome2 GeneDB intron 865682 865737 . - . intron SPBC36.12c ; systematic_id "SPBC36.12c" ; note "confirmed, C Hoffman personal communication" ;
chromosome2 GeneDB misc_feature 865732 865737 . - . misc_feature unknown_620 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 866316 866539 . - . mRNA SPBC713.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.02c" ; systematic_id "SPBC713.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 866540 870082 . - . mRNA SPBC713.02c ; systematic_id "SPBC713.02c" ; colour "2" ; gene "ubp21 ||| ubpD ||| ubp15 ||| SPBC713.02c" ; Alias "ubp15" ; db_xref "SPD:49/49G03" ; synonym "ubpD ||| ubp21" ; GO "GO:0005634; nucleus
GO:0045859; regulation of protein kinase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0030133; transport vesicle
GO:0032153; cell division site
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR304W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human USP7 ortholog; date=20101001" ; primary_name "ubp15" ; product "ubiquitin C-terminal hydrolase Ubp15" ; EC_number "3.1.2.15" ;
chromosome2 GeneDB CDS 866540 869835 . - . mRNA SPBC713.02c ; colour "2" ;
chromosome2 GeneDB CDS 869940 870030 . - . mRNA SPBC713.02c ; colour "2" ;
chromosome2 GeneDB CDS 870080 870082 . - . mRNA SPBC713.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 870081 870221 . - . mRNA SPBC713.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.02c" ; systematic_id "SPBC713.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 871210 871545 . + . mRNA SPBC713.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.03" ; systematic_id "SPBC713.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 871546 873173 . + . mRNA SPBC713.03 ; db_xref "SPD:49/49A09" ; systematic_id "SPBC713.03" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0004458; D-lactate dehydrogenase (cytochrome) activity
GO:0006091; generation of precursor metabolites and energy
GO:0006089; lactate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL178W and YEL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC713.03" ; product "mitochondrial D-lactate dehydrogenase, cytochrome (predicted)" ;
chromosome2 GeneDB CDS 871546 873109 . + . mRNA SPBC713.03 ; colour "7" ;
chromosome2 GeneDB CDS 873157 873173 . + . mRNA SPBC713.03 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 873174 873305 . + . mRNA SPBC713.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.03" ; systematic_id "SPBC713.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 873305 873357 . - . mRNA SPBC713.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.04c" ; systematic_id "SPBC713.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 873358 875922 . - . mRNA SPBC713.04c ; db_xref "SPD:49/49E09" ; systematic_id "SPBC713.04c" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCR057C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC713.04c" ; product "U3 snoRNP-associated protein Utp1 (predicted)" ;
chromosome2 GeneDB CDS 873358 875922 . - . mRNA SPBC713.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 875921 876055 . - . mRNA SPBC713.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.04c" ; systematic_id "SPBC713.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 876273 876349 . + . mRNA SPBC713.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.05" ; systematic_id "SPBC713.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 876350 877371 . + . mRNA SPBC713.05 ; db_xref "SPD:41/41H10" ; systematic_id "SPBC713.05" ; colour "7" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MORG1 ortholog; date=20101013" ; gene "SPBC713.05" ; product "WD repeat protein, human MAPK organizer 1 (MORG1) family (predicted)" ;
chromosome2 GeneDB CDS 876350 876695 . + . mRNA SPBC713.05 ; colour "7" ;
chromosome2 GeneDB CDS 876741 876777 . + . mRNA SPBC713.05 ; colour "7" ;
chromosome2 GeneDB CDS 876821 876978 . + . mRNA SPBC713.05 ; colour "7" ;
chromosome2 GeneDB CDS 877019 877371 . + . mRNA SPBC713.05 ; colour "7" ;
chromosome2 GeneDB CDS_parts 877504 879828 . + . mRNA SPBC713.06 ; systematic_id "SPBC713.06" ; colour "7" ; gene "SPBC713.06 ||| adl1 ||| lig3" ; Alias "adl1" ; db_xref "SPD:49/49E03" ; synonym "lig3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL164C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Another DNA Ligase; cv=name_description; date=20100126" ; GO "GO:0005634; nucleus
GO:0071897; DNA biosynthetic process
GO:0003910; DNA ligase (ATP) activity" ; primary_name "adl1" ; product "DNA ligase (predicted)" ; reserved_name "adl1" ;
chromosome2 GeneDB CDS 877504 879828 . + . mRNA SPBC713.06 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 878471 879918 . - . mRNA SPBC713.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.07c" ; systematic_id "SPBC713.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 879919 881652 . - . mRNA SPBC713.07c ; db_xref "SPD:49/49B10" ; systematic_id "SPBC713.07c" ; colour "7" ; GO "GO:0000329; vacuolar membrane
GO:0000298; endopolyphosphatase activity
GO:0006797; polyphosphate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR452W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC713.07c" ; product "vacuolar polyphosphatase (predicted)" ;
chromosome2 GeneDB CDS 879919 881652 . - . mRNA SPBC713.07c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 881651 882049 . - . mRNA SPBC713.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.07c" ; systematic_id "SPBC713.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 882324 882459 . + . mRNA SPBC713.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.08" ; systematic_id "SPBC713.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 882460 882675 . + . mRNA SPBC713.08 ; systematic_id "SPBC713.08" ; colour "7" ; gene "tom13 ||| mim1 ||| SPBC713.08" ; Alias "mim1" ; db_xref "SPD:50/50A07" ; synonym "tom13" ; GO "GO:0031307; integral to mitochondrial outer membrane
GO:0070096; mitochondrial outer membrane translocase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL026C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mim1" ; product "mitochondrial TOM complex assembly protein Mim1 (predicted)" ;
chromosome2 GeneDB CDS 882460 882675 . + . mRNA SPBC713.08 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 882676 882820 . + . mRNA SPBC713.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.08" ; systematic_id "SPBC713.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snoRNA 884166 884332 . - . snoRNA SPSNORNA.35 ; Alias "snR3" ; db_xref "EMBL:AJ632000 ||| PMID:15716270" ; systematic_id "SPSNORNA.35" ; controlled_curation "term=orthologous to S. cerevisiae snR3; date=20070104" ; gene "SPSNORNA.35 ||| snR3" ; primary_name "snR3" ; product "small nucleolar RNA snR3" ;
chromosome2 GeneDB CDS_parts 884959 886187 . + . mRNA SPBC713.09 ; db_xref "SPD:50/50E04" ; systematic_id "SPBC713.09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC713.09" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 884959 885000 . + . mRNA SPBC713.09 ; colour "8" ;
chromosome2 GeneDB CDS 885042 886187 . + . mRNA SPBC713.09 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 886188 886282 . + . mRNA SPBC713.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.09" ; systematic_id "SPBC713.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 886500 886615 . + . mRNA SPBC713.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.10" ; systematic_id "SPBC713.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 886616 887067 . + . mRNA SPBC713.10 ; systematic_id "SPBC713.10" ; colour "7" ; gene "SPBC713.10 ||| tim16" ; Alias "tim16" ; db_xref "SPD:41/41B12" ; GO "GO:0030150; protein import into mitochondrial matrix
GO:0001405; presequence translocase-associated import motor
GO:0005759; mitochondrial matrix
GO:0015450; protein translocase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL104W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tim16" ; product "TIM23 translocase complex subunit Tim16 (predicted)" ;
chromosome2 GeneDB CDS 886616 886664 . + . mRNA SPBC713.10 ; colour "7" ;
chromosome2 GeneDB CDS 886730 887067 . + . mRNA SPBC713.10 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 887068 887548 . + . mRNA SPBC713.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.10" ; systematic_id "SPBC713.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 887602 887998 . - . mRNA SPBC713.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.11c" ; systematic_id "SPBC713.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 887999 888151 . - . mRNA SPBC713.11c ; systematic_id "SPBC713.11c" ; colour "2" ; gene "pmp3 ||| SPBC713.11c" ; Alias "pmp3" ; db_xref "SPD:41/41A01" ; GO "GO:0006812; cation transport
GO:0005886; plasma membrane
GO:0042391; regulation of membrane potential
GO:0030003; cation homeostasis
GO:0071473; cellular response to cation stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060412 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16603158; date=20060412 ||| term=orthologous to S. cerevisiae YDR276C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "pmp3" ; product "plasma membrane proteolipid Pmp3" ;
chromosome2 GeneDB CDS 887999 888151 . - . mRNA SPBC713.11c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 888150 888649 . - . mRNA SPBC713.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.11c" ; systematic_id "SPBC713.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 889185 889286 . - . misc_feature unknown_621 ; note "222 (-1) 123015 123116 AL355485 AL355485 human DNA sequence from clone RP11-240M20 on chromosome 13, centre of strand switch region" ;
chromosome2 GeneDB misc_RNA 890907 892096 . + . misc_RNA SPNCRNA.332 ; db_xref "PMID:18488015" ; synonym "SPNG1304" ; systematic_id "SPNCRNA.332" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 892168 892678 . + . mRNA SPBC713.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.12" ; systematic_id "SPBC713.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 892679 894052 . + . mRNA SPBC713.12 ; systematic_id "SPBC713.12" ; colour "7" ; gene "erg1 ||| SPBC713.12" ; Alias "erg1" ; db_xref "SPD:50/50F06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR175C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006696; ergosterol biosynthesis
GO:0004506; squalene monooxygenase activity
GO:0005789; endoplasmic reticulum membrane" ; primary_name "erg1" ; product "squalene monooxygenase Erg1 (predicted)" ; EC_number "1.14.99.7" ; reserved_name "erg1" ;
chromosome2 GeneDB CDS 892679 894052 . + . mRNA SPBC713.12 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 894053 894257 . + . mRNA SPBC713.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC713.12" ; systematic_id "SPBC713.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 894422 894564 . - . mRNA SPBC216.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC216.01c" ; systematic_id "SPBC216.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 894565 897133 . - . mRNA SPBC216.01c ; systematic_id "SPBC216.01c" ; colour "7" ; gene "SPBC713.13c ||| SPBC216.01c" ; Alias "SPBC713.13c" ; db_xref "SPD:49/49E10" ; synonym "SPBC713.13c" ; GO "GO:0005634; nucleus
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL201C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC713.13c" ; product "DNA damage response protein (predicted)" ;
chromosome2 GeneDB CDS 894565 896363 . - . mRNA SPBC216.01c ; colour "7" ;
chromosome2 GeneDB CDS 896422 897133 . - . mRNA SPBC216.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 895884 895989 . - . misc_feature unknown_622 ; note "nominal overlap with cosmid SPBC713 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 895884 895989 . + . misc_feature unknown_623 ; note "nominal overlap with SPBC216 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 896364 896377 . - . misc_feature unknown_624 ; colour "6" ; note "ctaatcgctgtcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 896416 896421 . - . misc_feature unknown_625 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 897132 897395 . - . mRNA SPBC216.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC216.01c" ; systematic_id "SPBC216.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 898075 900981 . + . mRNA SPBC216.02 ; systematic_id "SPBC216.02" ; colour "2" ; gene "mcp5 ||| mug21 ||| num1 ||| SPBC216.02" ; note "meiotically upregulated gene Mug21" ; Alias "mcp5" ; db_xref "SPD:47/47D08" ; synonym "num1 ||| mug21" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16624923; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDR150W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; db_xref=PMID:16303567; cv=name_description; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0030989; horsetail nuclear movement
GO:0030989; horsetail nuclear movement
GO:0007129; synapsis
GO:0045132; meiotic chromosome segregation
GO:0005938; cell cortex
GO:0005938; cell cortex
GO:0032065; cortical protein anchoring
GO:0032065; cortical protein anchoring
GO:0030981; cortical microtubule cytoskeleton
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0051012; microtubule sliding
GO:0043495; protein anchor" ; primary_name "mcp5" ; product "cortical anchoring factor for dynein Mcp5/Num1" ;
chromosome2 GeneDB CDS 898075 900981 . + . mRNA SPBC216.02 ; colour "2" ;
chromosome2 GeneDB misc_RNA 900653 901207 . - . misc_RNA SPNCRNA.566 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.566" ; synonym "SPNG2AF34" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB 5'-UTR 901680 901941 . + . mRNA SPBC216.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC216.03" ; systematic_id "SPBC216.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 901942 902685 . + . mRNA SPBC216.03 ; db_xref "SPD:43/43A11" ; systematic_id "SPBC216.03" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR090W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC216.03" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 901942 902685 . + . mRNA SPBC216.03 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 902686 902836 . + . mRNA SPBC216.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC216.03" ; systematic_id "SPBC216.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 903061 903155 . - . mRNA SPBC216.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC216.04c" ; systematic_id "SPBC216.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 903156 903572 . - . mRNA SPBC216.04c ; db_xref "SPD:03/03C09" ; systematic_id "SPBC216.04c" ; colour "7" ; GO "GO:0000318; protein-methionine-R-oxide reductase activity
GO:0034599; cellular response to oxidative stress
GO:0044267; cellular protein metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPBC216.04c" ; product "methionine sulfoxide (predicted)" ;
chromosome2 GeneDB CDS 903156 903572 . - . mRNA SPBC216.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 903571 903775 . - . mRNA SPBC216.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC216.04c" ; systematic_id "SPBC216.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 904269 904364 . + . mRNA SPBC216.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC216.05" ; systematic_id "SPBC216.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 904365 911525 . + . mRNA SPBC216.05 ; systematic_id "SPBC216.05" ; colour "2" ; gene "rad3 ||| SPBC216.05" ; Alias "rad3" ; db_xref "SPD:41/41B03" ; GO "GO:0007131; meiotic recombination
GO:0000228; nuclear chromosome
GO:0004674; protein serine/threonine kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031573; intra-S DNA damage checkpoint
GO:0031573; intra-S DNA damage checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=phenotype, DNA damage checkpoint defects, S-phase; cv=phenotype; qualifier=deletion; db_xref=PMID:19037101; date=20090206 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YBR136W; date=19700101 ||| term=phosphoinositide 3-kinase family protein; date=20071228 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:14668484; date=20090110 ||| term=target is Chk1; db_xref=PMID:10512862; date=20100820 ||| term=target is Mrc1; db_xref=PMID:15173168; date=20100826" ; primary_name "rad3" ; product "ATR checkpoint kinase Rad3" ;
chromosome2 GeneDB CDS 904365 911525 . + . mRNA SPBC216.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 911526 912849 . + . mRNA SPBC216.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC216.05" ; systematic_id "SPBC216.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 911603 914593 . - . mRNA SPBC216.06c ; systematic_id "SPBC216.06c" ; colour "2" ; gene "swi1 ||| SPBC216.06c" ; db_xref "SPD:47/47F08" ; Alias "swi1" ; GO "GO:0005634; nucleus
GO:0031298; replication fork protection complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007531; mating type determination
GO:0043111; replication fork arrest
GO:0048478; replication fork protection
GO:0045950; negative regulation of mitotic recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA recombination defect, at mitotic DNA replication fork barriers, elevated; qualifier=deletion; cv=phenotype; db_xref=PMID:19273851; date=20090423 ||| term=orthologous to S. cerevisiae YNL273W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TIMELESS ortholog; date=20090423 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "swi1" ; product "replication fork protection complex subunit Swi1" ;
chromosome2 GeneDB CDS 911603 913570 . - . mRNA SPBC216.06c ; colour "2" ;
chromosome2 GeneDB CDS 913646 914593 . - . mRNA SPBC216.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 913571 913583 . - . misc_feature unknown_626 ; colour "6" ; note "ctaacaatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 913640 913645 . - . misc_feature unknown_627 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 914592 914774 . - . mRNA SPBC216.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC216.06c" ; systematic_id "SPBC216.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 915268 915270 . - . mRNA SPBC216.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC216.07c" ; systematic_id "SPBC216.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 915271 922284 . - . mRNA SPBC216.07c ; systematic_id "SPBC216.07c" ; colour "2" ; gene "tor2 ||| SPBC216.07c ||| SPBC646.01c" ; Alias "tor2" ; db_xref "SPD:34/34C09" ; synonym "SPBC646.01c" ; GO "GO:0031931; TORC 1 complex
GO:0031931; TORC 1 complex
GO:0034064; Tor2-Mei2-Ste11 complex
GO:0005737; cytoplasm
GO:0016303; phosphatidylinositol 3-kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031929; TOR signaling pathway
GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0010507; negative regulation of autophagy
GO:0010503; negative regulation of cell cycle arrest in response to nitrogen starvation
GO:0010503; negative regulation of cell cycle arrest in response to nitrogen starvation
GO:0010503; negative regulation of cell cycle arrest in response to nitrogen starvation
GO:0010515; negative regulation of induction of conjugation with cellular fusion
GO:0031670; cellular response to nutrient
GO:0033554; cellular response to stress
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to rapamycin; residue=L2048S; cv=phenotype; db_xref=PMID:18076573; date=20071228 ||| term=phosphoinositide 3-kinase family protein; date=20071228 ||| term=orthologous to S. cerevisiae YJR066W and YKL203C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14560953; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tor2" ; product "phosphatidylinositol kinase Tor2" ; EC_number "2.7.1.137" ;
chromosome2 GeneDB CDS 915271 922284 . - . mRNA SPBC216.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 921090 921194 . + . misc_feature unknown_628 ; note "nominal overlap with cosmid SPBC216 and cosmid SPBC646" ;
chromosome2 GeneDB 5'-UTR 922283 922309 . - . mRNA SPBC216.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC216.07c" ; systematic_id "SPBC216.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 922691 922724 . + . mRNA SPBC646.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.02" ; systematic_id "SPBC646.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 922725 926579 . + . mRNA SPBC646.02 ; systematic_id "SPBC646.02" ; colour "2" ; gene "cwf11 ||| SPBC646.02" ; Alias "cwf11" ; db_xref "SPD:48/48F03" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf11" ; product "complexed with Cdc5 protein Cwf11" ;
chromosome2 GeneDB CDS 922725 926579 . + . mRNA SPBC646.02 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 926818 926849 . + . mRNA SPBC646.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.03" ; systematic_id "SPBC646.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 926850 928358 . + . mRNA SPBC646.03 ; db_xref "SPD:24/24E01" ; systematic_id "SPBC646.03" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0050567; glutamyl-tRNA(Gln) amidotransferase activity
GO:0032543; mitochondrial translation
GO:0006399; tRNA metabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR293C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC646.03" ; product "mitochondrial glutamyl-tRNA amidotransferase alpha subunit (predicted)" ;
chromosome2 GeneDB CDS 926850 927096 . + . mRNA SPBC646.03 ; colour "7" ;
chromosome2 GeneDB CDS 927143 927968 . + . mRNA SPBC646.03 ; colour "7" ;
chromosome2 GeneDB CDS 928016 928358 . + . mRNA SPBC646.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 927097 927102 . + . misc_feature unknown_629 ; colour "6" ; note "gtagac, splice donor sequence" ;
chromosome2 GeneDB misc_feature 927124 927142 . + . misc_feature unknown_630 ; colour "6" ; note "ctaattgcggtttaactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 927969 927974 . + . misc_feature unknown_631 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 927999 928015 . + . misc_feature unknown_632 ; colour "6" ; note "ctaatatttacaaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 928359 928743 . + . mRNA SPBC646.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.03" ; systematic_id "SPBC646.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 928887 928988 . + . mRNA SPBC646.04 ; Alias "pla1" ; ID "SPBC646.04" ; db_xref "EMBL:X79705" ; systematic_id "SPBC646.04" ; primary_name "pla1" ;
chromosome2 GeneDB CDS_parts 928989 930812 . + . mRNA SPBC646.04 ; systematic_id "SPBC646.04" ; colour "2" ; gene "pla1 ||| SPBC646.04" ; Alias "pla1" ; db_xref "SPD:45/45H12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004652; polynucleotide adenylyltransferase activity
GO:0006378; mRNA polyadenylation
GO:0005847; mRNA cleavage and polyadenylation specificity factor complex
GO:0006406; mRNA export from nucleus" ; primary_name "pla1" ; product "poly(A) polymerase Pla1" ; EC_number "2.7.7.19" ;
chromosome2 GeneDB CDS 928989 930444 . + . mRNA SPBC646.04 ; colour "2" ;
chromosome2 GeneDB CDS 930488 930605 . + . mRNA SPBC646.04 ; colour "2" ;
chromosome2 GeneDB CDS 930645 930738 . + . mRNA SPBC646.04 ; colour "2" ;
chromosome2 GeneDB CDS 930780 930812 . + . mRNA SPBC646.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 930445 930450 . + . misc_feature unknown_633 ; colour "6" ; note "gcaaga, splice donor sequence" ;
chromosome2 GeneDB intron 930445 930487 . + . intron SPBC646.04 ; Alias "pla1" ; db_xref "EMBL:X79705" ; systematic_id "SPBC646.04" ; primary_name "pla1" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 930475 930487 . + . misc_feature unknown_634 ; colour "6" ; note "ctaactttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 930606 930611 . + . misc_feature unknown_635 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 930606 930644 . + . intron SPBC646.04 ; Alias "pla1" ; db_xref "EMBL:X79705" ; systematic_id "SPBC646.04" ; primary_name "pla1" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 930631 930644 . + . misc_feature unknown_636 ; colour "6" ; note "ctcacacattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 930739 930744 . + . misc_feature unknown_637 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB intron 930739 930779 . + . intron SPBC646.04 ; Alias "pla1" ; db_xref "EMBL:X79705" ; systematic_id "SPBC646.04" ; primary_name "pla1" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 930766 930779 . + . misc_feature unknown_638 ; colour "6" ; note "ctaacgatctttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 930813 931025 . + . mRNA SPBC646.04 ; Alias "pla1" ; ID "SPBC646.04" ; db_xref "EMBL:X79705" ; systematic_id "SPBC646.04" ; primary_name "pla1" ;
chromosome2 GeneDB 3'-UTR 931002 931059 . - . mRNA SPBC646.05c ; Alias "erg9" ; ID "SPBC646.05c" ; systematic_id "SPBC646.05c" ; primary_name "erg9" ; note "mRNA from SPSQUASYN" ;
chromosome2 GeneDB CDS_parts 931060 932442 . - . mRNA SPBC646.05c ; systematic_id "SPBC646.05c" ; colour "7" ; gene "erg9 ||| SPBC646.05c" ; Alias "erg9" ; db_xref "SPD:32/32H09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR190W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004310; farnesyl-diphosphate farnesyltransferase activity
GO:0005783; endoplasmic reticulum
GO:0006696; ergosterol biosynthesis
GO:0005515; protein binding
GO:0005789; endoplasmic reticulum membrane
GO:0042175; nuclear envelope-endoplasmic reticulum network" ; primary_name "erg9" ; product "squalene synthase Erg9 (predicted)" ; EC_number "2.5.1.21" ;
chromosome2 GeneDB CDS 931060 932442 . - . mRNA SPBC646.05c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 932669 932780 . - . mRNA SPBC646.06c ; Alias "agn2" ; ID "SPBC646.06c" ; db_xref "PMID:15194814" ; systematic_id "SPBC646.06c" ; primary_name "agn2" ;
chromosome2 GeneDB CDS_parts 932781 934082 . - . mRNA SPBC646.06c ; systematic_id "SPBC646.06c" ; colour "2" ; gene "agn2 ||| SPBC646.06c" ; Alias "agn2" ; db_xref "SPD:19/19E02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, gene structure updated; db_xref=PMID:15194814; date=20100927" ; GO "GO:0009986; cell surface
GO:0005619; spore wall (sensu Fungi)
GO:0051118; glucan endo-1,3-alpha-glucosidase activity
GO:0072316; alpha-glucan catabolic process involved in ascospore release from ascus
GO:0071998; ascospore release from ascus" ; primary_name "agn2" ; product "glucan endo-1,3-alpha-glucosidase Agn2" ; EC_number "3.2.1.59" ;
chromosome2 GeneDB CDS 932781 934082 . - . mRNA SPBC646.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 932857 932861 . - . misc_feature unknown_639 ; note "sequence updated from TAGGG to TATGG 30 Sept 04" ;
chromosome2 GeneDB 5'-UTR 934083 934239 . - . mRNA SPBC646.06c ; Alias "agn2" ; ID "SPBC646.06c" ; db_xref "PMID:15194814" ; systematic_id "SPBC646.06c" ; primary_name "agn2" ;
chromosome2 GeneDB 3'-UTR 934516 934715 . - . mRNA SPBC646.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.07c" ; systematic_id "SPBC646.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 934716 935603 . - . mRNA SPBC646.07c ; db_xref "SPD:12/12A09" ; systematic_id "SPBC646.07c" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005789; endoplasmic reticulum membrane
GO:0000038; very-long-chain fatty acid metabolism
GO:0030497; fatty acid elongation
GO:0016631; enoyl-[acyl-carrier-protein] reductase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL015C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC646.07c" ; product "enoyl reductase (predicted)" ;
chromosome2 GeneDB CDS 934716 935603 . - . mRNA SPBC646.07c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 935602 935618 . - . mRNA SPBC646.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.07c" ; systematic_id "SPBC646.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 936060 936540 . - . mRNA SPBC646.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.08c" ; systematic_id "SPBC646.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 936541 938091 . - . mRNA SPBC646.08c ; db_xref "SPD:45/45A06" ; systematic_id "SPBC646.08c" ; colour "7" ; GO "GO:0008142; oxysterol binding
GO:0006696; ergosterol biosynthetic process
GO:0030100; regulation of endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR001W and YKR003W and YOR237W and YPL145C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC646.08c" ; product "oxysterol binding protein (predicted)" ;
chromosome2 GeneDB CDS 936541 938091 . - . mRNA SPBC646.08c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 938090 938148 . - . mRNA SPBC646.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.08c" ; systematic_id "SPBC646.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 938700 940261 . - . mRNA SPBC646.09c ; systematic_id "SPBC646.09c" ; colour "2" ; gene "int6 ||| yin6 ||| SPBC646.09c" ; Alias "int6" ; db_xref "SPD:40/40F02" ; synonym "yin6" ; GO "GO:0005737; cytoplasm
GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030437; ascospore formation
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0071313; cellular response to caffeine
GO:0000070; mitotic sister chromatid segregation
GO:0070196; eIF3 complex assembly
GO:0032436; positive regulation of proteasomal ubiquitin-dependent protein catabolism
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0043248; proteasome assembly
GO:0031144; proteasome localization
GO:0006461; protein complex assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11705997; date=20081211 ||| term=disease associated, cancer; db_xref=PMID:11115556; date=20060106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=complementation, functionally complemented by human INT6; db_xref=PMID:12553909; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sensitive to caffeine; qualifier=deletion; cv=phenotype; date=20081211 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18502752; date=20090110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "int6" ; product "eIF3e subunit Int6" ;
chromosome2 GeneDB CDS 938700 940171 . - . mRNA SPBC646.09c ; colour "2" ;
chromosome2 GeneDB CDS 940228 940261 . - . mRNA SPBC646.09c ; colour "2" ;
chromosome2 GeneDB misc_feature 940172 940184 . - . misc_feature unknown_640 ; colour "6" ; note "ctaacctttatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 940172 940227 . - . intron SPBC646.09c ; systematic_id "SPBC646.09c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 940222 940227 . - . misc_feature unknown_641 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 940260 940291 . - . mRNA SPBC646.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.09c" ; systematic_id "SPBC646.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 940734 940824 . - . mRNA SPBC646.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.10c" ; systematic_id "SPBC646.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 940825 942318 . - . mRNA SPBC646.10c ; db_xref "SPD:24/24B06" ; systematic_id "SPBC646.10c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing
GO:0030532; small nuclear ribonucleoprotein complex
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR197W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC646.10c" ; product "U3 snoRNP protein Nop56 (predicted)" ;
chromosome2 GeneDB CDS 940825 942318 . - . mRNA SPBC646.10c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 942317 942381 . - . mRNA SPBC646.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.10c" ; systematic_id "SPBC646.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 942476 942820 . + . LTR unknown_642 ; colour "4" ; note "Tf2-type LTR" ;
chromosome2 GeneDB 5'-UTR 942932 942941 . + . mRNA SPBC646.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.11" ; systematic_id "SPBC646.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 942942 944773 . + . mRNA SPBC646.11 ; systematic_id "SPBC646.11" ; colour "2" ; gene "cct6 ||| SPBC646.11" ; Alias "cct6" ; db_xref "SPD:36/36F12" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR188W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cct6" ; product "chaperonin-containing T-complex zeta subunit Cct6" ;
chromosome2 GeneDB CDS 942942 942998 . + . mRNA SPBC646.11 ; colour "2" ;
chromosome2 GeneDB CDS 943044 943117 . + . mRNA SPBC646.11 ; colour "2" ;
chromosome2 GeneDB CDS 943156 943219 . + . mRNA SPBC646.11 ; colour "2" ;
chromosome2 GeneDB CDS 943361 944773 . + . mRNA SPBC646.11 ; colour "2" ;
chromosome2 GeneDB misc_feature 942999 943004 . + . misc_feature unknown_643 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 943031 943043 . + . misc_feature unknown_644 ; colour "6" ; note "ctaacgttggcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 943118 943123 . + . misc_feature unknown_645 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 943143 943155 . + . misc_feature unknown_646 ; colour "6" ; note "ctcataattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 943220 943225 . + . misc_feature unknown_647 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 943345 943360 . + . misc_feature unknown_648 ; colour "6" ; note "ctaactttattggtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 944774 944857 . + . mRNA SPBC646.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.11" ; systematic_id "SPBC646.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 945102 947402 . - . mRNA SPBC646.12c ; systematic_id "SPBC646.12c" ; colour "2" ; gene "gap1 ||| src1 ||| sar1 ||| SPBC646.12c" ; Alias "gap1" ; db_xref "SPD:39/39F10" ; synonym "src1 ||| sar1" ; GO "GO:0005099; Ras GTPase activator activity
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0007265; Ras protein signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1883874; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Suppressor of Activated Ras1; date=20101207 ||| term=name description, GTPase Activating Protein; date=20101207" ; primary_name "gap1" ; product "GTPase activating protein Gap1" ;
chromosome2 GeneDB CDS 945102 947402 . - . mRNA SPBC646.12c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 947401 948163 . - . mRNA SPBC646.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.12c" ; systematic_id "SPBC646.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 948645 959593 . - . misc_feature unknown_649 ; note "nominal overlap with cosmid SP23729, EM:U23729 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_RNA 948994 949948 . + . misc_RNA SPNCRNA.334 ; db_xref "PMID:18488015" ; synonym "SPNG1313" ; systematic_id "SPNCRNA.334" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| may be connected to SPNCRNA.335" ;
chromosome2 GeneDB misc_RNA 949972 950606 . + . misc_RNA SPNCRNA.335 ; db_xref "PMID:18488015" ; synonym "SPNG1314" ; systematic_id "SPNCRNA.335" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| may be connected to SPNCRNA.334" ;
chromosome2 GeneDB 5'-UTR 950799 950880 . + . mRNA SPBC646.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.13" ; systematic_id "SPBC646.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 950881 952107 . + . mRNA SPBC646.13 ; systematic_id "SPBC646.13" ; colour "2" ; gene "sds23 ||| psp1 ||| moc1 ||| SPBC646.13" ; Alias "sds23" ; db_xref "SPD:32/32F09" ; synonym "psp1 ||| moc1" ; GO "GO:0051286; cell tip
GO:0005829; cytosol
GO:0005634; nucleus
GO:0005515; protein binding
GO:0019933; cAMP-mediated signaling
GO:0031139; positive regulation of conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion
GO:0007346; regulation of progression through mitotic cell cycle
GO:0071472; cellular response to salt stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16819157; date=20060517 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:16819157; date=20100705 ||| term=phenotype, sensitive to salt stress; db_xref=PMID:16819157; date=20100705 ||| term=localization negatively regulated by the cAMP pathway; db_xref=PMID:16819157; date=20060811 ||| term=complementation, functionally complemented by S. cerevisiae YGL056C and YBR214W; db_xref=PMID:16041152; cv=complementation; date=20060919 ||| term=orthologous to S. cerevisiae YGL056C and YBR214W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; qualifier=during_stationary_phase; cv=pt_mod; db_xref=PMID:16819157; date=20090213 ||| term=name description, Multicopy suppressor of Overexpressed Cyr1; cv=name_description; date=20091124 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:9242669; date=20100825" ; primary_name "sds23" ; product "inducer of sexual development Sds23/Moc1" ;
chromosome2 GeneDB CDS 950881 952107 . + . mRNA SPBC646.13 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 952108 952292 . + . mRNA SPBC646.13 ; Alias "sds23" ; ID "SPBC646.13" ; db_xref "EMBL:D87870" ; systematic_id "SPBC646.13" ; primary_name "sds23" ; note "confirmed by mRNA" ;
chromosome2 GeneDB CDS_parts 952816 954276 . - . mRNA SPBC646.14c ; systematic_id "SPBC646.14c" ; colour "2" ; gene "orc5 ||| SPBC646.14c" ; Alias "orc5" ; db_xref "SPD:40/40E10" ; GO "GO:0003688; DNA replication origin binding
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0005656; pre-replicative complex
GO:0005524; ATP binding
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YNL261W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "orc5" ; product "origin recognition complex subunit Orc5" ;
chromosome2 GeneDB CDS 952816 953751 . - . mRNA SPBC646.14c ; colour "2" ;
chromosome2 GeneDB CDS 953792 953866 . - . mRNA SPBC646.14c ; colour "2" ;
chromosome2 GeneDB CDS 953920 954276 . - . mRNA SPBC646.14c ; colour "2" ;
chromosome2 GeneDB misc_feature 953752 953764 . - . misc_feature unknown_650 ; colour "6" ; note "ttaactattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 953786 953791 . - . misc_feature unknown_651 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 953867 953882 . - . misc_feature unknown_652 ; colour "6" ; note "ctaatatgagttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 953914 953919 . - . misc_feature unknown_653 ; colour "6" ; note "gtactt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 954275 954317 . - . mRNA SPBC646.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.14c" ; systematic_id "SPBC646.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 954866 955127 . - . mRNA SPBC646.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.15c" ; systematic_id "SPBC646.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 955128 956488 . - . mRNA SPBC646.15c ; db_xref "SPD:21/21B03" ; systematic_id "SPBC646.15c" ; colour "7" ; GO "GO:0045046; protein import into peroxisome membrane
GO:0005778; peroxisomal membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC646.15c" ; product "Pex16 family peroxisome import protein (predicted)" ;
chromosome2 GeneDB CDS 955128 955210 . - . mRNA SPBC646.15c ; colour "7" ;
chromosome2 GeneDB CDS 955257 955369 . - . mRNA SPBC646.15c ; colour "7" ;
chromosome2 GeneDB CDS 955435 955992 . - . mRNA SPBC646.15c ; colour "7" ;
chromosome2 GeneDB CDS 956070 956301 . - . mRNA SPBC646.15c ; colour "7" ;
chromosome2 GeneDB CDS 956344 956488 . - . mRNA SPBC646.15c ; colour "7" ;
chromosome2 GeneDB misc_feature 955211 955230 . - . misc_feature unknown_654 ; colour "6" ; note "ctaacctttcattcagttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 955251 955256 . - . misc_feature unknown_655 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 955370 955382 . - . misc_feature unknown_656 ; colour "6" ; note "ctaactaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 955429 955434 . - . misc_feature unknown_657 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 955993 956006 . - . misc_feature unknown_658 ; colour "6" ; note "ttaacaaatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 956064 956069 . - . misc_feature unknown_659 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 956302 956317 . - . misc_feature unknown_660 ; colour "6" ; note "ctaaccttttgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 956338 956343 . - . misc_feature unknown_661 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 956487 956682 . - . mRNA SPBC646.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.15c" ; systematic_id "SPBC646.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 957658 958392 . + . mRNA SPBC646.16 ; db_xref "SPD:08/08H04" ; systematic_id "SPBC646.16" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL011C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; gene "SPBC646.16" ; product "20S proteasome component alpha 1 (predicted)" ; EC_number "3.4.25.1" ;
chromosome2 GeneDB CDS 957658 958392 . + . mRNA SPBC646.16 ; colour "7" ;
chromosome2 GeneDB misc_feature 958271 959593 . + . misc_feature unknown_662 ; note "nominal overlap with cosmid SPBC646 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 958393 958553 . + . mRNA SPBC646.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC646.16" ; systematic_id "SPBC646.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 958669 960389 . - . mRNA SPBC646.17c ; systematic_id "SPBC646.17c" ; colour "2" ; gene "dic1 ||| SPBC646.17c ||| SPBP35G2.01c ||| SPBC855.01c ||| mug44" ; Alias "dic1" ; db_xref "SPD:35/35F04" ; synonym "SPBC855.01c ||| SPBP35G2.01c ||| mug44" ; GO "GO:0030286; dynein complex
GO:0030989; horsetail nuclear movement
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dic1" ; product "dynein intermediate chain Dic1" ;
chromosome2 GeneDB CDS 958669 959574 . - . mRNA SPBC646.17c ; colour "2" ;
chromosome2 GeneDB CDS 959614 960216 . - . mRNA SPBC646.17c ; colour "2" ;
chromosome2 GeneDB CDS 960264 960389 . - . mRNA SPBC646.17c ; colour "2" ;
chromosome2 GeneDB misc_feature 959575 959587 . - . misc_feature unknown_663 ; colour "6" ; note "ctaaccattaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 959904 960991 . + . misc_feature unknown_664 ; note "nominal overlap with cosmid p35G2 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 960217 960230 . - . misc_feature unknown_665 ; colour "6" ; note "ctaacctaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 960258 960263 . - . misc_feature unknown_666 ; colour "6" ; note "gttatt, splice donor sequence" ;
chromosome2 GeneDB tRNA 960729 960800 . + . tRNA SPBTRNAHIS.02 ; systematic_id "SPBTRNAHIS.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033452; GTG codon-amino acid adaptor activity" ; gene "SPBTRNAHIS.02" ; product "tRNA Histidine" ; note "tRNA His anticodon GTG, Cove score 69.87" ;
chromosome2 GeneDB 3'-UTR 961217 962260 . - . mRNA SPBP35G2.16c ; Alias "ecl2" ; ID "SPBP35G2.16c" ; obsolete_name "SPNGAF61" ; db_xref "PMID:18488015" ; systematic_id "SPBP35G2.16c" ; primary_name "ecl2" ;
chromosome2 GeneDB CDS_parts 962261 962515 . - . mRNA SPBP35G2.16c ; systematic_id "SPBP35G2.16c" ; colour "2" ; gene "ecl2 ||| SPBP35G2.16c" ; obsolete_name "SPNGAF61" ; Alias "ecl2" ; GO "GO:0005634; nucleus
GO:0001300; chronological cell aging" ; controlled_curation "term=orthologous to S. cerevisiae YGR146C; date=20090410 ||| term=species distribution, conserved in Fungi; date=20090410 ||| term=species distribution, conserved in Fungi only; date=20090410 ||| term=name description, Extender of the Chronological Lifespan; db_xref=PMID:19352039; cv=name_description; date=20091124" ; primary_name "ecl2" ; product "extender of the chronological lifespan protein Ecl2" ;
chromosome2 GeneDB CDS 962261 962515 . - . mRNA SPBP35G2.16c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 962516 963061 . - . mRNA SPBP35G2.16c ; Alias "ecl2" ; ID "SPBP35G2.16c" ; obsolete_name "SPNGAF61" ; db_xref "PMID:18488015" ; systematic_id "SPBP35G2.16c" ; primary_name "ecl2" ;
chromosome2 GeneDB misc_feature 963062 966710 . + . misc_feature unknown_667 ; note "low complexity gene free region" ;
chromosome2 GeneDB 5'-UTR 966035 966710 . + . mRNA SPBP35G2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.02" ; systematic_id "SPBP35G2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 966711 967334 . + . mRNA SPBP35G2.02 ; db_xref "SPD:07/07A10" ; systematic_id "SPBP35G2.02" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0010498; proteasomal protein catabolic process" ; gene "SPBP35G2.02" ; product "poteasome interacting protein (predicted)" ;
chromosome2 GeneDB CDS 966711 967334 . + . mRNA SPBP35G2.02 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 967335 967463 . + . mRNA SPBP35G2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.02" ; systematic_id "SPBP35G2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 967736 967745 . - . mRNA SPBP35G2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.03c" ; systematic_id "SPBP35G2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 967746 968767 . - . mRNA SPBP35G2.03c ; systematic_id "SPBP35G2.03c" ; colour "2" ; gene "sgo1 ||| SPBP35G2.03c" ; db_xref "SPD:15/15C08" ; Alias "sgo1" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0045144; meiotic sister chromatid segregation
GO:0045143; homologous chromosome segregation
GO:0005634; nucleus
GO:0000778; kinetochore
GO:0051177; meiotic sister chromatid cohesion
GO:0051754; meiotic sister chromatid cohesion, centromeric
GO:0019236; response to pheromone" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, ShuGOshin; cv=name_description; date=20090817 ||| term=human hsgo1 ortholog; date=19700101" ; primary_name "sgo1" ; product "inner centromere protein, shugoshin, Sgo1" ;
chromosome2 GeneDB CDS 967746 968604 . - . mRNA SPBP35G2.03c ; colour "2" ;
chromosome2 GeneDB CDS 968667 968767 . - . mRNA SPBP35G2.03c ; colour "2" ;
chromosome2 GeneDB misc_feature 968605 968615 . - . misc_feature unknown_668 ; colour "6" ; note "ctaactttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 968661 968666 . - . misc_feature unknown_669 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 969008 970034 . - . mRNA SPBP35G2.04c ; db_xref "SPD:15/15E04" ; systematic_id "SPBP35G2.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBP35G2.04c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 969008 969265 . - . mRNA SPBP35G2.04c ; colour "8" ;
chromosome2 GeneDB CDS 969451 969871 . - . mRNA SPBP35G2.04c ; colour "8" ;
chromosome2 GeneDB CDS 969964 970034 . - . mRNA SPBP35G2.04c ; colour "8" ;
chromosome2 GeneDB misc_feature 969266 969285 . - . misc_feature unknown_670 ; colour "6" ; note "ctaaccgactacttacttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 969445 969450 . - . misc_feature unknown_671 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 969872 969884 . - . misc_feature unknown_672 ; colour "6" ; note "ctaactttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 969956 969961 . - . misc_feature unknown_673 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 970033 970048 . - . mRNA SPBP35G2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.04c" ; systematic_id "SPBP35G2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB intron 970104 970227 . - . intron unknown_674 ;
chromosome2 GeneDB 3'-UTR 970607 970956 . - . mRNA SPBP35G2.05c ; Alias "cki2" ; ID "SPBP35G2.05c" ; systematic_id "SPBP35G2.05c" ; primary_name "cki2" ; note "mRNA from AU013380" ;
chromosome2 GeneDB CDS_parts 970957 972448 . - . mRNA SPBP35G2.05c ; systematic_id "SPBP35G2.05c" ; colour "2" ; gene "cki2 ||| SPBP35G2.05c" ; Alias "cki2" ; db_xref "SPD:33/33A10" ; GO "GO:0005737; cytoplasm
GO:0008360; regulation of cell shape
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0030100; regulation of endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CK2 subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8163505; date=19700101 ||| term=orthologous to S. cerevisiae YNL154C and YHR135C and YER123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cki2" ; product "serine/threonine protein kinase Cki2" ;
chromosome2 GeneDB CDS 970957 971919 . - . mRNA SPBP35G2.05c ; colour "2" ;
chromosome2 GeneDB CDS 971985 972133 . - . mRNA SPBP35G2.05c ; colour "2" ;
chromosome2 GeneDB CDS 972201 972270 . - . mRNA SPBP35G2.05c ; colour "2" ;
chromosome2 GeneDB CDS 972323 972448 . - . mRNA SPBP35G2.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 971920 971933 . - . misc_feature unknown_675 ; colour "6" ; note "ctgacatttcaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 971979 971984 . - . misc_feature unknown_676 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 972134 972153 . - . misc_feature unknown_677 ; colour "6" ; note "ctaaccgtatttgcaaatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 972134 972200 . - . intron SPBP35G2.05c ; systematic_id "SPBP35G2.05c" ; note "confirmed by EST" ;
chromosome2 GeneDB misc_feature 972195 972200 . - . misc_feature unknown_678 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 972271 972287 . - . misc_feature unknown_679 ; colour "6" ; note "ctaacaatggacgttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 972271 972322 . - . intron SPBP35G2.05c ; systematic_id "SPBP35G2.05c" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 972317 972322 . - . misc_feature unknown_680 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 972447 972742 . - . mRNA SPBP35G2.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.05c" ; systematic_id "SPBP35G2.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 973049 976632 . - . mRNA SPBP35G2.06c ; systematic_id "SPBP35G2.06c" ; colour "2" ; gene "nup131 ||| SPBP35G2.06c" ; Alias "nup131" ; db_xref "SPD:48/48D11" ; synonym "Nup133a" ; GO "GO:0005643; nuclear pore
GO:0031080; Nup107-160 complex
GO:0005515; protein binding
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15226438; date=19700101 ||| term=orthologous to S. cerevisiae YKR082W; date=19700101 ||| term=WD repeat protein; date=20080229 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nup131" ; product "nucleoporin Nup131" ;
chromosome2 GeneDB CDS 973049 974181 . - . mRNA SPBP35G2.06c ; colour "2" ;
chromosome2 GeneDB CDS 974223 974577 . - . mRNA SPBP35G2.06c ; colour "2" ;
chromosome2 GeneDB CDS 974647 975002 . - . mRNA SPBP35G2.06c ; colour "2" ;
chromosome2 GeneDB CDS 975044 975137 . - . mRNA SPBP35G2.06c ; colour "2" ;
chromosome2 GeneDB CDS 975172 976632 . - . mRNA SPBP35G2.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 974182 974193 . - . misc_feature unknown_681 ; colour "6" ; note "ctaacaaagaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 974217 974222 . - . misc_feature unknown_682 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 974578 974587 . - . misc_feature unknown_683 ; colour "6" ; note "ctaatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 975003 975016 . - . misc_feature unknown_684 ; colour "6" ; note "ctaattgcaatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 975038 975043 . - . misc_feature unknown_685 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 975138 975148 . - . misc_feature unknown_686 ; colour "6" ; note "ctaacatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 975166 975171 . - . misc_feature unknown_687 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 977031 977108 . + . mRNA SPBP35G2.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.07" ; systematic_id "SPBP35G2.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 977109 979118 . + . mRNA SPBP35G2.07 ; systematic_id "SPBP35G2.07" ; colour "2" ; gene "ilv1 ||| SPBP35G2.07" ; Alias "ilv1" ; db_xref "SPD:33/33F03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003984; acetolactate synthase activity
GO:0005739; mitochondrion
GO:0009097; isoleucine biosynthesis
GO:0005948; acetolactate synthase complex" ; primary_name "ilv1" ; product "acetolactate synthase catalytic subunit" ; EC_number "2.2.1.6" ;
chromosome2 GeneDB CDS 977109 979118 . + . mRNA SPBP35G2.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 979119 979390 . + . mRNA SPBP35G2.07 ; Alias "ilv1" ; ID "SPBP35G2.07" ; systematic_id "SPBP35G2.07" ; primary_name "ilv1" ; note "mRNA from AU013199" ;
chromosome2 GeneDB 3'-UTR 979453 979528 . - . mRNA SPBP35G2.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.08c" ; systematic_id "SPBP35G2.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 979529 980574 . - . mRNA SPBP35G2.08c ; systematic_id "SPBP35G2.08c" ; colour "2" ; gene "SPBP35G2.08c ||| air1" ; Alias "air1" ; db_xref "SPD:15/15H06" ; GO "GO:0031499; TRAMP complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0016078; tRNA catabolism
GO:0016077; snoRNA catabolism
GO:0016075; rRNA catabolism
GO:0016076; snRNA catabolism
GO:0043630; ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=orthologous to S. cerevisiae YIL079C and YDL175C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "air1" ; product "zinc knuckle TRAMP complex subunit Air1" ;
chromosome2 GeneDB CDS 979529 980152 . - . mRNA SPBP35G2.08c ; colour "2" ;
chromosome2 GeneDB CDS 980208 980309 . - . mRNA SPBP35G2.08c ; colour "2" ;
chromosome2 GeneDB CDS 980359 980574 . - . mRNA SPBP35G2.08c ; colour "2" ;
chromosome2 GeneDB misc_feature 980153 980167 . - . misc_feature unknown_688 ; colour "6" ; note "ctaactgtattacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 980202 980207 . - . misc_feature unknown_689 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 980310 980323 . - . misc_feature unknown_690 ; colour "6" ; note "ctaataaaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 980353 980358 . - . misc_feature unknown_691 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 980573 980718 . - . mRNA SPBP35G2.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.08c" ; systematic_id "SPBP35G2.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 981210 981239 . + . mRNA SPBP35G2.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.09" ; systematic_id "SPBP35G2.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 981240 981893 . + . mRNA SPBP35G2.09 ; systematic_id "SPBP35G2.09" ; colour "2" ; gene "usp103 ||| yhc1 ||| SPBP35G2.09" ; Alias "usp103" ; db_xref "SPD:07/07E11" ; synonym "yhc1" ; GO "GO:0003729; mRNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000243; commitment complex
GO:0005685; snRNP U1
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20070201 ||| term=zf-C2H2 type; date=20070201 ||| term=orthologous to S. cerevisiae YLR298C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "usp103" ; product "U1 snRNP-associated protein Usp103 (predicted)" ;
chromosome2 GeneDB CDS 981240 981249 . + . mRNA SPBP35G2.09 ; colour "2" ;
chromosome2 GeneDB CDS 981296 981511 . + . mRNA SPBP35G2.09 ; colour "2" ;
chromosome2 GeneDB CDS 981571 981893 . + . mRNA SPBP35G2.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 981250 981255 . + . misc_feature unknown_692 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 981285 981295 . + . misc_feature unknown_693 ; colour "6" ; note "ttaatgcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 981512 981517 . + . misc_feature unknown_694 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 981552 981570 . + . misc_feature unknown_695 ; colour "6" ; note "ctaatattccgaattttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 981894 981925 . + . mRNA SPBP35G2.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.09" ; systematic_id "SPBP35G2.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 982068 986324 . + . mRNA SPBP35G2.10 ; systematic_id "SPBP35G2.10" ; colour "2" ; gene "mit1 ||| SPBP35G2.10" ; note "CHD like Fission yeast Protein" ; Alias "mit1" ; db_xref "SPD:39/39E04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Mi2-like protein Interacting with clr Three; cv=name_description; db_xref=PMID:17289569; date=20070424 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016585; chromatin remodeling complex
GO:0006338; chromatin remodeling
GO:0008094; DNA-dependent ATPase activity
GO:0005634; nucleus
GO:0004003; ATP-dependent DNA helicase activity
GO:0005524; ATP binding
GO:0016581; NuRD complex
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0006342; chromatin silencing
GO:0005721; centric heterochromatin
GO:0031933; telomeric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0005524; ATP binding
GO:0016584; nucleosome spacing
GO:0016887; ATPase activity
GO:0033553; rDNA heterochromatin
GO:0019787; small conjugating protein ligase activity
GO:0000790; nuclear chromatin" ; primary_name "mit1" ; product "SHREC complex subunit Mit1" ;
chromosome2 GeneDB CDS 982068 986324 . + . mRNA SPBP35G2.10 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 986383 986643 . - . mRNA SPBP35G2.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.11c" ; systematic_id "SPBP35G2.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 986644 987837 . - . mRNA SPBP35G2.11c ; db_xref "SPD:19/19A10" ; systematic_id "SPBP35G2.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-ZZ type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBP35G2.11c" ; product "transcription related zf-ZZ type zinc finger protein" ;
chromosome2 GeneDB CDS 986644 987837 . - . mRNA SPBP35G2.11c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 987836 987975 . - . mRNA SPBP35G2.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.11c" ; systematic_id "SPBP35G2.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB conflict 988561 988563 . - . conflict unknown_696 ; citation "[2]" ; note "conflict with cosmid SP23729. p23G2 sequence correct" ;
chromosome2 GeneDB 5'-UTR 989519 989557 . + . mRNA SPBP35G2.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.12" ; systematic_id "SPBP35G2.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 989558 990175 . + . mRNA SPBP35G2.12 ; db_xref "SPD:07/07A03" ; systematic_id "SPBP35G2.12" ; colour "7" ; GO "GO:0047631; ADP-ribose diphosphatase activity
GO:0055086; nucleobase, nucleoside and nucleotide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR111C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBP35G2.12" ; product "ADP-ribose diphosphatase, NudF subfamily (predicted)" ;
chromosome2 GeneDB CDS 989558 990175 . + . mRNA SPBP35G2.12 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 990176 990234 . + . mRNA SPBP35G2.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.12" ; systematic_id "SPBP35G2.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 990340 990416 . - . mRNA SPBP35G2.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.13c" ; systematic_id "SPBP35G2.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 990417 991367 . - . mRNA SPBP35G2.13c ; systematic_id "SPBP35G2.13c" ; colour "2" ; gene "swc2 ||| SPBP35G2.13c" ; db_xref "SPD:13/13D02" ; Alias "swc2" ; GO "GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0006355; regulation of transcription, DNA- dependent
GO:0043486; histone exchange
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR485C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "swc2" ; product "Swr1 complex complex subunit Swc2" ;
chromosome2 GeneDB CDS 990417 991367 . - . mRNA SPBP35G2.13c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 991366 991551 . - . mRNA SPBP35G2.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.13c" ; systematic_id "SPBP35G2.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 992760 992886 . + . mRNA SPBP35G2.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP35G2.14" ; systematic_id "SPBP35G2.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 992887 996069 . + . mRNA SPBP35G2.14 ; db_xref "SPD:47/47H12" ; systematic_id "SPBP35G2.14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YJR091C and YPR042C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPBP35G2.14" ; product "RNA-binding protein" ;
chromosome2 GeneDB CDS 992887 996069 . + . mRNA SPBP35G2.14 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 996070 996435 . + . mRNA SPBP35G2.14 ; ID "SPBP35G2.14" ; systematic_id "SPBP35G2.14" ; note "mRNA from AU012254" ;
chromosome2 GeneDB 5'-UTR 996780 996842 . + . mRNA SPBC146.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.01" ; systematic_id "SPBC146.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 996843 1000080 . + . mRNA SPBC146.01 ; systematic_id "SPBC146.01" ; colour "7" ; gene "SPBP35G2.15 ||| SPBC146.01 ||| med15" ; Alias "med15" ; db_xref "SPD:30/30C02" ; synonym "SPBP35G2.15" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0006366; transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "med15" ; product "mediator complex subunit Med15 (predicted)" ;
chromosome2 GeneDB CDS 996843 997019 . + . mRNA SPBC146.01 ; colour "7" ;
chromosome2 GeneDB CDS 997066 1000080 . + . mRNA SPBC146.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 997020 997025 . + . misc_feature unknown_697 ; colour "6" ; note "gtattg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 997052 997065 . + . misc_feature unknown_698 ; colour "6" ; note "cttaccagtaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 998743 998847 . + . misc_feature unknown_699 ; note "nominal overlap with cosmid SPBC146 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 1000081 1000461 . + . mRNA SPBC146.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.01" ; systematic_id "SPBC146.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1001011 1001802 . + . mRNA SPBC146.02 ; db_xref "SPD:10/10A07" ; systematic_id "SPBC146.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC146.02" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1001011 1001802 . + . mRNA SPBC146.02 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1002263 1002488 . - . mRNA SPBC146.03c ; Alias "cut3" ; ID "SPBC146.03c" ; systematic_id "SPBC146.03c" ; primary_name "cut3" ; note "mRNA from AU009580" ;
chromosome2 GeneDB CDS_parts 1002489 1006463 . - . mRNA SPBC146.03c ; systematic_id "SPBC146.03c" ; colour "2" ; gene "cut3 ||| SPBC146.03c" ; Alias "cut3" ; db_xref "SPD:34/34A12" ; synonym "smc4" ; GO "GO:0000796; condensin complex
GO:0005737; cytoplasm
GO:0000939; inner kinetochore of condensed chromosome
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0007076; mitotic chromosome condensation
GO:0000070; mitotic sister chromatid segregation
GO:0034613; cellular protein localization
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; cv=phenotype; db_xref=PMID:7957061; date=19700101 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YLR086W; date=19700101 ||| term=protein sequence feature, NES; cv=sequence_feature; db_xref=PMID:10485849; date=19700101 ||| term=human hCAP-C ortholog; date=20080602 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:10485849; date=20090213 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:10485849; date=19700101" ; primary_name "cut3" ; product "condensin complex subunit Cut3" ;
chromosome2 GeneDB CDS 1002489 1006463 . - . mRNA SPBC146.03c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1006462 1006513 . - . mRNA SPBC146.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.03c" ; systematic_id "SPBC146.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1007997 1008017 . + . mRNA SPBC146.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.04" ; systematic_id "SPBC146.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1008018 1008596 . + . mRNA SPBC146.04 ; db_xref "SPD:06/06C05" ; systematic_id "SPBC146.04" ; colour "7" ; GO "GO:0030134; ER to Golgi transport vesicle
GO:0005789; endoplasmic reticulum membrane
GO:0016971; flavin-linked sulfhydryl oxidase activity
GO:0016972; thiol oxidase activity
GO:0006467; protein thiol-disulfide exchange" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPR037C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC146.04" ; product "sulfhydryl oxidase (predicted)" ;
chromosome2 GeneDB CDS 1008018 1008596 . + . mRNA SPBC146.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1008597 1008710 . + . mRNA SPBC146.04 ; ID "SPBC146.04" ; systematic_id "SPBC146.04" ; note "mRNA from AU008890" ;
chromosome2 GeneDB 3'-UTR 1008712 1008798 . - . mRNA SPBC146.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.05c" ; systematic_id "SPBC146.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1008799 1009991 . - . mRNA SPBC146.05c ; systematic_id "SPBC146.05c" ; colour "2" ; gene "cwf25 ||| SPBC146.05c" ; Alias "cwf25" ; db_xref "SPD:19/19A05" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL245C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cwf25" ; product "complexed with Cdc5 protein Cwf25" ;
chromosome2 GeneDB CDS 1008799 1009894 . - . mRNA SPBC146.05c ; colour "2" ;
chromosome2 GeneDB CDS 1009957 1009991 . - . mRNA SPBC146.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 1009895 1009910 . - . misc_feature unknown_700 ; colour "6" ; note "ctaatattatgattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1009951 1009956 . - . misc_feature unknown_701 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 1010419 1010600 . - . mRNA SPBC146.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.06c" ; systematic_id "SPBC146.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1010601 1012712 . - . mRNA SPBC146.06c ; db_xref "SPD:27/27H10" ; systematic_id "SPBC146.06c" ; colour "10" ; GO "GO:0004518; nuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC146.06c" ; product "VRR-NUC nuclease associated domain, human MTMR15 homolog" ;
chromosome2 GeneDB CDS 1010601 1012712 . - . mRNA SPBC146.06c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 1012711 1013113 . - . mRNA SPBC146.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.06c" ; systematic_id "SPBC146.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1013275 1013554 . + . mRNA SPBC146.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.07" ; systematic_id "SPBC146.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1013555 1015108 . + . mRNA SPBC146.07 ; systematic_id "SPBC146.07" ; colour "2" ; gene "prp2 ||| mis11 ||| SPBC146.07" ; Alias "prp2" ; db_xref "SPD:40/40F01" ; synonym "mis11" ; GO "GO:0000243; commitment complex
GO:0005686; snRNP U2
GO:0003729; mRNA binding
GO:0030515; snoRNA binding
GO:0000349; generation of catalytic spliceosome for first transesterification step
GO:0000348; nuclear mRNA branch site recognition
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SR family; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=human U2AF54 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YKL074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp2" ; product "U2AF large subunit (U2AF-59)" ;
chromosome2 GeneDB CDS 1013555 1015108 . + . mRNA SPBC146.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1015109 1015146 . + . mRNA SPBC146.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.07" ; systematic_id "SPBC146.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1015332 1015767 . - . mRNA SPBC146.08c ; db_xref "SPD:03/03F12" ; systematic_id "SPBC146.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPBC146.08c" ; product "translation initiation factor eIF1A-like (predicted)" ;
chromosome2 GeneDB CDS 1015332 1015416 . - . mRNA SPBC146.08c ; colour "7" ;
chromosome2 GeneDB CDS 1015469 1015767 . - . mRNA SPBC146.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 1015417 1015431 . - . misc_feature unknown_702 ; colour "6" ; note "ctaactagtttaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1015463 1015468 . - . misc_feature unknown_703 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1015768 1015825 . - . mRNA SPBC146.08c ; ID "SPBC146.08c" ; systematic_id "SPBC146.08c" ; note "mRNA from AU008794" ;
chromosome2 GeneDB 3'-UTR 1015936 1015999 . - . mRNA SPBC146.09c ; ID "SPBC146.09c" ; systematic_id "SPBC146.09c" ; note "mRNA from AU007140" ;
chromosome2 GeneDB CDS_parts 1016000 1019002 . - . mRNA SPBC146.09c ; systematic_id "SPBC146.09c" ; colour "2" ; gene "lsd1 ||| SPBC146.09c ||| swm1 ||| saf110" ; Alias "lsd1" ; db_xref "SPD:47/47G02" ; synonym "swm1 ||| saf110" ; GO "GO:0033193; Lsd1/2 complex
GO:0000790; nuclear chromatin
GO:0032454; histone demethylase activity (H3-K9 specific)
GO:0031491; nucleosome binding
GO:0009300; antisense RNA transcription
GO:0006338; chromatin remodeling
GO:0033169; histone H3-K9 demethylation
GO:0045893; positive regulation of transcription, DNA-dependent
GO:0040020; regulation of meiosis
GO:0034605; cellular response to heat
GO:0034649; histone demethylase activity (H3- monomethyl-K4 specific)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16990277; date=20070421 ||| term=HMG box; qualifier=inferred from context; date=20070421 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070421 ||| term=human KDM1B ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17371846; date=20090110" ; primary_name "lsd1" ; product "histone demethylase SWIRM1" ;
chromosome2 GeneDB CDS 1016000 1019002 . - . mRNA SPBC146.09c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1019001 1019054 . - . mRNA SPBC146.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.09c" ; systematic_id "SPBC146.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1019549 1019752 . + . mRNA SPBC146.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.10" ; systematic_id "SPBC146.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1019753 1020322 . + . mRNA SPBC146.10 ; systematic_id "SPBC146.10" ; colour "2" ; gene "mug57 ||| SPBC146.10" ; Alias "mug57" ; db_xref "SPD:04/04D06" ; GO "GO:0009986; cell surface
GO:0005576; extracellular region
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060817 ||| term=orthologous to S. cerevisiae YDR262W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "mug57" ; product "meiotically upregulated gene Mug57" ;
chromosome2 GeneDB CDS 1019753 1020322 . + . mRNA SPBC146.10 ; colour "2" ;
chromosome2 GeneDB CDS_parts 1020296 1021303 . - . mRNA SPBC146.11c ; systematic_id "SPBC146.11c" ; colour "2" ; db_xref "SPD:14/14H06" ; Alias "mug97" ; synonym "meu33" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; db_xref=PMID:11376151; cv=gene_ex; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; GO "GO:0045132; meiotic chromosome segregation
GO:0030437; sporulation (sensu Fungi)" ; primary_name "mug97" ; product "meiotically upregulated gene Mug97" ;
chromosome2 GeneDB CDS 1020296 1021303 . - . mRNA SPBC146.11c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1020323 1021638 . + . mRNA SPBC146.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.10" ; systematic_id "SPBC146.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1022300 1022454 . + . mRNA SPBC146.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.12" ; systematic_id "SPBC146.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1022455 1023855 . + . mRNA SPBC146.12 ; systematic_id "SPBC146.12" ; colour "7" ; gene "coq6 ||| SPBC146.12" ; Alias "coq6" ; db_xref "SPD:21/21F08" ; GO "GO:0016709; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen
GO:0005743; mitochondrial inner membrane
GO:0006744; ubiquinone biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR255C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "coq6" ; product "monooxygenase Coq6 (predicted)" ;
chromosome2 GeneDB CDS 1022455 1023855 . + . mRNA SPBC146.12 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1023856 1023947 . + . mRNA SPBC146.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.12" ; systematic_id "SPBC146.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1024057 1024232 . - . mRNA SPBC146.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.13c" ; systematic_id "SPBC146.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1024233 1027930 . - . mRNA SPBC146.13c ; systematic_id "SPBC146.13c" ; colour "2" ; gene "myo1 ||| SPBC146.13c" ; Alias "myo1" ; db_xref "SPD:39/39C03" ; GO "GO:0030479; actin cortical patch
GO:0051286; cell tip
GO:0005826; contractile ring
GO:0005628; forespore membrane
; lipid raft
; medial ring
GO:0045160; myosin I complex
GO:0030427; site of polarized growth
GO:0000146; microfilament motor activity
GO:0005543; phospholipid binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000147; actin cortical patch assembly
GO:0051666; actin cortical patch localization
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0007015; actin filament organization
GO:0045010; actin nucleation
GO:0045010; actin nucleation
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0006897; endocytosis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0031580; lipid raft distribution
GO:0051127; positive regulation of actin nucleation
GO:0030100; regulation of endocytosis
GO:0030476; spore wall assembly (sensu Fungi)
GO:0003779; actin binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=IQ domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11076964; date=19700101 ||| term=orthologous to S. cerevisiae YMR109W and YKL129C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "myo1" ; product "myosin type I" ;
chromosome2 GeneDB CDS 1024233 1027883 . - . mRNA SPBC146.13c ; colour "2" ;
chromosome2 GeneDB CDS 1027928 1027930 . - . mRNA SPBC146.13c ; colour "2" ;
chromosome2 GeneDB misc_feature 1027884 1027895 . - . misc_feature unknown_704 ; colour "6" ; note "ttaataaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1027922 1027927 . - . misc_feature unknown_705 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1027929 1027962 . - . mRNA SPBC146.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.13c" ; systematic_id "SPBC146.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1028878 1029115 . - . mRNA SPBC146.14c ; ID "SPBC146.14c" ; systematic_id "SPBC146.14c" ; note "mRNA from AU012213" ;
chromosome2 GeneDB CDS_parts 1029116 1031938 . - . mRNA SPBC146.14c ; systematic_id "SPBC146.14c" ; colour "7" ; gene "sec26 ||| SPBC146.14c ||| SPBC337.01c" ; Alias "sec26" ; db_xref "SPD:29/29E06" ; synonym "SPBC337.01c" ; GO "GO:0030126; COPI vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR238C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=adaptin family; date=20100902" ; primary_name "sec26" ; product "coatomer beta subunit (predicted)" ;
chromosome2 GeneDB CDS 1029116 1031938 . - . mRNA SPBC146.14c ; colour "7" ;
chromosome2 GeneDB misc_feature 1030663 1031938 . - . misc_feature unknown_706 ; colour "7" ; note "sec26 SPBC337.01c SPBC146.14c see c146 for complete CDS, converted to misc_feature as not merging" ;
chromosome2 GeneDB misc_feature 1030663 1032343 . + . misc_feature unknown_707 ; note "nominal overlap with cosmid SPBC146 and cosmid SPBC337" ;
chromosome2 GeneDB 5'-UTR 1031937 1031975 . - . mRNA SPBC146.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC146.14c" ; systematic_id "SPBC146.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1032324 1032771 . + . misc_RNA SPNCRNA.42 ; Alias "prl42" ; db_xref "EMBL:AB084854 ||| PMID:12597277" ; systematic_id "SPNCRNA.42" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl42" ; gene "prl42 ||| SPNCRNA.42" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB misc_feature 1032814 1034365 . + . misc_feature unknown_708 ; note "region duplicated in S. pombe cosmid c569." ;
chromosome2 GeneDB CDS_parts 1032857 1033776 . - . mRNA SPBC337.02c ; db_xref "SPD:12/12G09" ; systematic_id "SPBC337.02c" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; controlled_curation "term=warning, frameshifted; cv=warning; date=20080829" ; colour "10" ; gene "SPBC337.02c" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 6" ;
chromosome2 GeneDB CDS 1032857 1033607 . - . mRNA SPBC337.02c ; colour "10" ;
chromosome2 GeneDB CDS 1033610 1033776 . - . mRNA SPBC337.02c ; colour "10" ;
chromosome2 GeneDB LTR 1034420 1034731 . - . LTR unknown_709 ; note "393 (-1) 44 358 TF1" ;
chromosome2 GeneDB CDS_parts 1035538 1036864 . + . mRNA SPBC337.03 ; db_xref "SPD:23/23A12" ; systematic_id "SPBC337.03" ; colour "7" ; GO "GO:0030846; transcription termination from Pol II promoter, RNA polymerase(A) coupled" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR289C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC337.03" ; product "RNA polymerase II transcription termination factor (predicted)" ;
chromosome2 GeneDB CDS 1035538 1035685 . + . mRNA SPBC337.03 ; colour "7" ;
chromosome2 GeneDB CDS 1035734 1035834 . + . mRNA SPBC337.03 ; colour "7" ;
chromosome2 GeneDB CDS 1035903 1036097 . + . mRNA SPBC337.03 ; colour "7" ;
chromosome2 GeneDB CDS 1036145 1036864 . + . mRNA SPBC337.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 1035686 1035691 . + . misc_feature unknown_710 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1035717 1035733 . + . misc_feature unknown_711 ; colour "6" ; note "ctaactaatttaaccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1035835 1035840 . + . misc_feature unknown_712 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1035885 1035902 . + . misc_feature unknown_713 ; colour "6" ; note "ctaataatatttgcatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1036098 1036103 . + . misc_feature unknown_714 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1036133 1036144 . + . misc_feature unknown_715 ; colour "6" ; note "ctaattgcatag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 1037077 1038385 . + . mRNA SPBC337.04 ; systematic_id "SPBC337.04" ; colour "2" ; gene "ppk27 ||| SPBC337.04" ; Alias "ppk27" ; db_xref "SPD:22/22G08" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YKL116C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk27" ; product "serine/threonine protein kinase Ppk27 (predicted)" ;
chromosome2 GeneDB CDS 1037077 1037782 . + . mRNA SPBC337.04 ; colour "2" ;
chromosome2 GeneDB CDS 1037850 1038385 . + . mRNA SPBC337.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 1037783 1037788 . + . misc_feature unknown_716 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1037832 1037849 . + . misc_feature unknown_717 ; colour "6" ; note "ctaacactttgtctttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1038462 1038546 . - . mRNA SPBC337.05c ; ID "SPBC337.05c" ; systematic_id "SPBC337.05c" ; note "mRNA from SPD272" ;
chromosome2 GeneDB CDS_parts 1038547 1040578 . - . mRNA SPBC337.05c ; systematic_id "SPBC337.05c" ; colour "2" ; gene "cct8 ||| SPBC337.05c" ; Alias "cct8" ; db_xref "SPD:33/33F06" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL008C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cct8" ; product "chaperonin-containing T-complex theta subunit Cct8" ;
chromosome2 GeneDB CDS 1038547 1039902 . - . mRNA SPBC337.05c ; colour "2" ;
chromosome2 GeneDB CDS 1040189 1040310 . - . mRNA SPBC337.05c ; colour "2" ;
chromosome2 GeneDB CDS 1040363 1040402 . - . mRNA SPBC337.05c ; colour "2" ;
chromosome2 GeneDB CDS 1040456 1040578 . - . mRNA SPBC337.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 1039903 1039913 . - . misc_feature unknown_718 ; colour "6" ; note "ctaaccattag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1039903 1040188 . - . intron SPBC337.05c ; systematic_id "SPBC337.05c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1040183 1040188 . - . misc_feature unknown_719 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1040311 1040325 . - . misc_feature unknown_720 ; colour "6" ; note "ctaacacacacatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1040311 1040362 . - . intron SPBC337.05c ; systematic_id "SPBC337.05c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1040357 1040362 . - . misc_feature unknown_721 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1040403 1040415 . - . misc_feature unknown_722 ; colour "6" ; note "ctgatacttttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1040403 1040455 . - . intron SPBC337.05c ; systematic_id "SPBC337.05c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1040450 1040455 . - . misc_feature unknown_723 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1040579 1040613 . - . mRNA SPBC337.05c ; ID "SPBC337.05c" ; systematic_id "SPBC337.05c" ; note "mRNA from SPD272" ;
chromosome2 GeneDB 3'-UTR 1040988 1041116 . - . mRNA SPBC337.06c ; ID "SPBC337.06c" ; systematic_id "SPBC337.06c" ; note "mRNA from SPD143" ;
chromosome2 GeneDB CDS_parts 1041117 1041973 . - . mRNA SPBC337.06c ; systematic_id "SPBC337.06c" ; colour "2" ; gene "Cwf15 ||| SPBC337.06c" ; Alias "cwf15" ; db_xref "SPD:11/11D01" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR163W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf15" ; product "complexed with Cdc5 protein Cwf15" ;
chromosome2 GeneDB CDS 1041117 1041899 . - . mRNA SPBC337.06c ; colour "2" ;
chromosome2 GeneDB CDS 1041959 1041973 . - . mRNA SPBC337.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 1041900 1041914 . - . misc_feature unknown_724 ; colour "6" ; note "ctaactcatgtttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1041900 1041958 . - . intron SPBC337.06c ; systematic_id "SPBC337.06c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1041953 1041958 . - . misc_feature unknown_725 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1041974 1042032 . - . mRNA SPBC337.06c ; ID "SPBC337.06c" ; systematic_id "SPBC337.06c" ; note "mRNA from SPD143" ;
chromosome2 GeneDB 3'-UTR 1042210 1042294 . - . mRNA SPBC337.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.07c" ; systematic_id "SPBC337.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1042295 1043959 . - . mRNA SPBC337.07c ; db_xref "SPD:34/34H05" ; systematic_id "SPBC337.07c" ; colour "7" ; GO "GO:0004181; metallocarboxypeptidase activity
GO:0009272; fungal-type cell wall assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR132C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPBC337.07c" ; product "carboxypeptidase (predicted)" ;
chromosome2 GeneDB CDS 1042295 1042393 . - . mRNA SPBC337.07c ; colour "7" ;
chromosome2 GeneDB CDS 1042434 1042681 . - . mRNA SPBC337.07c ; colour "7" ;
chromosome2 GeneDB CDS 1042723 1042851 . - . mRNA SPBC337.07c ; colour "7" ;
chromosome2 GeneDB CDS 1042901 1043006 . - . mRNA SPBC337.07c ; colour "7" ;
chromosome2 GeneDB CDS 1043048 1043959 . - . mRNA SPBC337.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 1042394 1042406 . - . misc_feature unknown_726 ; colour "6" ; note "ctaattaaacaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1042428 1042433 . - . misc_feature unknown_727 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1042682 1042694 . - . misc_feature unknown_728 ; colour "6" ; note "ctaattaagttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1042717 1042722 . - . misc_feature unknown_729 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1042852 1042865 . - . misc_feature unknown_730 ; colour "6" ; note "ctaacaaactcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1042895 1042900 . - . misc_feature unknown_731 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1043007 1043021 . - . misc_feature unknown_732 ; colour "6" ; note "ctaattatttgtcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1043042 1043047 . - . misc_feature unknown_733 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1043958 1044075 . - . mRNA SPBC337.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.07c" ; systematic_id "SPBC337.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1044271 1044417 . - . mRNA SPBC337.08c ; ID "SPBC337.08c" ; systematic_id "SPBC337.08c" ; note "mRNA from AU011508" ;
chromosome2 GeneDB CDS_parts 1044418 1045566 . - . mRNA SPBC337.08c ; systematic_id "SPBC337.08c" ; colour "2" ; gene "ubi4 ||| SPBC337.08c" ; Alias "ubi4" ; db_xref "SPD:40/40D01" ; GO "GO:0007126; meiosis
GO:0016579; protein deubiquitination
GO:0016567; protein ubiquitination
GO:0031386; protein tag" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YLL039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ubi4" ; product "ubiquitin" ;
chromosome2 GeneDB CDS 1044418 1045566 . - . mRNA SPBC337.08c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1047487 1047534 . + . mRNA SPBC337.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.09" ; systematic_id "SPBC337.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1047535 1048120 . + . mRNA SPBC337.09 ; systematic_id "SPBC337.09" ; colour "7" ; gene "erg28 ||| SPBC337.09" ; Alias "erg28" ; db_xref "SPD:06/06D04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006696; ergosterol biosynthesis
GO:0005789; endoplasmic reticulum membrane" ; primary_name "erg28" ; product "Erg28 protein (predicted)" ; reserved_name "erg28" ;
chromosome2 GeneDB CDS 1047535 1047676 . + . mRNA SPBC337.09 ; colour "7" ;
chromosome2 GeneDB CDS 1047788 1047878 . + . mRNA SPBC337.09 ; colour "7" ;
chromosome2 GeneDB CDS 1047943 1048120 . + . mRNA SPBC337.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 1047677 1047682 . + . misc_feature unknown_734 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1047770 1047787 . + . misc_feature unknown_735 ; colour "6" ; note "ctgactttatatctgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1047879 1047884 . + . misc_feature unknown_736 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 1047879 1047942 . + . intron SPBC337.09 ; systematic_id "SPBC337.09" ; note "confirmed by mRNA from spc05879" ;
chromosome2 GeneDB misc_feature 1047929 1047942 . + . misc_feature unknown_737 ; colour "6" ; note "ctaacttctattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1048121 1048402 . + . mRNA SPBC337.09 ; ID "SPBC337.09" ; systematic_id "SPBC337.09" ; note "mRNA from spc05879" ;
chromosome2 GeneDB CDS_parts 1048564 1049430 . - . mRNA SPBC337.10c ; db_xref "SPD:11/11F10" ; systematic_id "SPBC337.10c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0016226; iron-sulphur cluster assembly
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR071C; date=19700101 ||| term=human CIAPIN1 ortholog; date=20080507 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC337.10c" ; product "anamorsin family protein, involved in iron- sulphur cluster assembly (predicted)" ;
chromosome2 GeneDB CDS 1048564 1049430 . - . mRNA SPBC337.10c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1049429 1049800 . - . mRNA SPBC337.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.10c" ; systematic_id "SPBC337.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1050239 1050314 . + . mRNA SPBC337.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.11" ; systematic_id "SPBC337.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1050315 1051292 . + . mRNA SPBC337.11 ; db_xref "SPD:14/14A08" ; systematic_id "SPBC337.11" ; colour "7" ; GO "GO:0008233; peptidase activity
GO:0005743; mitochondrial inner membrane
GO:0005737; cytoplasm
GO:0004024; alcohol dehydrogenase activity, zinc- dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC337.11" ; product "mitochondrial peptidase (predicted)" ;
chromosome2 GeneDB CDS 1050315 1051292 . + . mRNA SPBC337.11 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1051293 1051446 . + . mRNA SPBC337.11 ; ID "SPBC337.11" ; systematic_id "SPBC337.11" ; note "mRNA from spc00839" ;
chromosome2 GeneDB 5'-UTR 1051668 1052079 . + . mRNA SPBC337.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.12" ; systematic_id "SPBC337.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1052080 1053471 . + . mRNA SPBC337.12 ; db_xref "SPD:21/21E08" ; systematic_id "SPBC337.12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPBC337.12" ; product "human ZC3H3 homolog" ;
chromosome2 GeneDB CDS 1052080 1052122 . + . mRNA SPBC337.12 ; colour "10" ;
chromosome2 GeneDB CDS 1052339 1052368 . + . mRNA SPBC337.12 ; colour "10" ;
chromosome2 GeneDB CDS 1052411 1053471 . + . mRNA SPBC337.12 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 1053472 1053539 . + . mRNA SPBC337.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.12" ; systematic_id "SPBC337.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1053703 1053777 . - . mRNA SPBC337.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.13c" ; systematic_id "SPBC337.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1053778 1054704 . - . mRNA SPBC337.13c ; systematic_id "SPBC337.13c" ; colour "7" ; gene "gtr1 ||| SPBC337.13c" ; Alias "gtr1" ; db_xref "SPD:12/12H10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML121W; date=19700101 ||| term=human RRAGA ortholog; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gtr1" ; product "Gtr1/RagA G protein Gtr1 (predicted)" ;
chromosome2 GeneDB CDS 1053778 1054704 . - . mRNA SPBC337.13c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1054703 1054914 . - . mRNA SPBC337.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.13c" ; systematic_id "SPBC337.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1055529 1055661 . + . mRNA SPBC337.14 ; ID "SPBC337.14" ; systematic_id "SPBC337.14" ; note "mRNA from AU006882" ;
chromosome2 GeneDB CDS_parts 1055662 1056226 . + . mRNA SPBC337.14 ; systematic_id "SPBC337.14" ; colour "2" ; gene "rpb4 ||| SPBC337.14" ; Alias "rpb4" ; db_xref "SPD:39/39H10" ; GO "GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0003899; DNA-directed RNA polymerase activity
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10523639; date=19700101 ||| term=orthologous to S. cerevisiae YJL140W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16972065; date=20090110" ; primary_name "rpb4" ; product "DNA-directed RNA polymerase II complex subunit Rpb4" ;
chromosome2 GeneDB CDS 1055662 1055713 . + . mRNA SPBC337.14 ; colour "2" ;
chromosome2 GeneDB CDS 1055752 1055857 . + . mRNA SPBC337.14 ; colour "2" ;
chromosome2 GeneDB CDS 1055903 1055980 . + . mRNA SPBC337.14 ; colour "2" ;
chromosome2 GeneDB CDS 1056055 1056226 . + . mRNA SPBC337.14 ; colour "2" ;
chromosome2 GeneDB misc_feature 1055714 1055719 . + . misc_feature unknown_738 ; colour "6" ; note "gttgga, splice donor sequence" ;
chromosome2 GeneDB intron 1055714 1055751 . + . intron SPBC337.14 ; systematic_id "SPBC337.14" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1055739 1055751 . + . misc_feature unknown_739 ; colour "6" ; note "ctaatataaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1055858 1055863 . + . misc_feature unknown_740 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 1055858 1055902 . + . intron SPBC337.14 ; systematic_id "SPBC337.14" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1055890 1055902 . + . misc_feature unknown_741 ; colour "6" ; note "ttaactaggatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1055981 1055986 . + . misc_feature unknown_742 ; colour "6" ; note "gtacat, splice donor sequence" ;
chromosome2 GeneDB intron 1055981 1056054 . + . intron SPBC337.14 ; systematic_id "SPBC337.14" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1056043 1056054 . + . misc_feature unknown_743 ; colour "6" ; note "ctaacctcatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1056227 1056395 . + . mRNA SPBC337.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.14" ; systematic_id "SPBC337.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1056510 1056624 . - . mRNA SPBC337.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.15c" ; systematic_id "SPBC337.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1056625 1057275 . - . mRNA SPBC337.15c ; systematic_id "SPBC337.15c" ; colour "2" ; gene "coq7 ||| SPBC337.15c" ; Alias "coq7" ; db_xref "SPD:07/07E06" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006744; ubiquinone biosynthesis
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR125C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "coq7" ; product "ubiquinone biosynthesis protein Coq7" ;
chromosome2 GeneDB CDS 1056625 1057275 . - . mRNA SPBC337.15c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1057274 1057442 . - . mRNA SPBC337.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC337.15c" ; systematic_id "SPBC337.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1058347 1059067 . + . mRNA SPBC337.16 ; systematic_id "SPBC337.16" ; colour "2" ; gene "cho1 ||| SPBC337.16" ; Alias "cho1" ; db_xref "KEGG:MAP00260; ||| SPD:40/40A09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR073C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006656; phosphatidylcholine biosynthesis
GO:0000773; phosphatidyl-N-methylethanolamine N- methyltransferase activity
GO:0005789; endoplasmic reticulum membrane" ; primary_name "cho1" ; product "phosphatidyl-N-methylethanolamine N- methyltransferase (predicted)" ; EC_number "2.1.1.71" ;
chromosome2 GeneDB CDS 1058347 1058951 . + . mRNA SPBC337.16 ; colour "2" ;
chromosome2 GeneDB CDS 1059007 1059067 . + . mRNA SPBC337.16 ; colour "2" ;
chromosome2 GeneDB misc_feature 1058952 1058957 . + . misc_feature unknown_744 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 1058952 1059006 . + . intron SPBC337.16 ; systematic_id "SPBC337.16" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1058993 1059006 . + . misc_feature unknown_745 ; colour "6" ; note "ctaaccattaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1059068 1059126 . + . mRNA SPBC337.16 ; ID "SPBC337.16" ; systematic_id "SPBC337.16" ; note "mRNA from spc01909" ;
chromosome2 GeneDB 3'-UTR 1059420 1059521 . - . mRNA SPBC1734.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.01c" ; systematic_id "SPBC1734.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1059522 1061570 . - . mRNA SPBC1734.01c ; systematic_id "SPBC1734.01c" ; colour "7" ; gene "SPBC1734.01c ||| SPBC337.17c ||| esf1" ; Alias "esf1" ; db_xref "SPD:37/37C04" ; synonym "SPBC337.17c" ; GO "GO:0005730; nucleolus
GO:0003723; RNA binding
GO:0006364; rRNA processing" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR365C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "esf1" ; product "pre-rRNA processing protein Esf1 (predicted)" ;
chromosome2 GeneDB CDS 1059522 1061570 . - . mRNA SPBC1734.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 1060982 1068004 . + . misc_feature unknown_746 ; note "nominal overlap with cosmid SPBC337, EM:AL031854 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 1061896 1061969 . - . mRNA SPBC1734.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.02c" ; systematic_id "SPBC1734.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1061970 1063377 . - . mRNA SPBC1734.02c ; systematic_id "SPBC1734.02c" ; colour "2" ; gene "cdc27 ||| SPBC1734.02c ||| SPBC337.18c" ; Alias "cdc27" ; db_xref "SPD:40/40E06" ; synonym "SPBC337.18c" ; GO "GO:0043625; delta DNA polymerase complex
GO:0006271; DNA strand elongation
GO:0000731; DNA synthesis during DNA repair
GO:0003887; DNA-directed DNA polymerase activity
GO:0008408; 3'-5' exonuclease activity
GO:0005515; protein binding
GO:0000723; telomere maintenance
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043137; DNA replication, removal of RNA primer
GO:0005515; protein binding
GO:0005515; protein binding
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization, recruits PCNA to the Pol delta holoenzyme; db_xref=PMID:12124382; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YJR043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:6943408; date=20100705" ; primary_name "cdc27" ; product "DNA polymerase delta subunit Cdc27" ;
chromosome2 GeneDB CDS 1061970 1062635 . - . mRNA SPBC1734.02c ; colour "2" ;
chromosome2 GeneDB CDS 1062710 1062817 . - . mRNA SPBC1734.02c ; colour "2" ;
chromosome2 GeneDB CDS 1062874 1062941 . - . mRNA SPBC1734.02c ; colour "2" ;
chromosome2 GeneDB CDS 1062996 1063162 . - . mRNA SPBC1734.02c ; colour "2" ;
chromosome2 GeneDB CDS 1063219 1063274 . - . mRNA SPBC1734.02c ; colour "2" ;
chromosome2 GeneDB CDS 1063324 1063377 . - . mRNA SPBC1734.02c ; colour "2" ;
chromosome2 GeneDB misc_feature 1062636 1062649 . - . misc_feature unknown_747 ; colour "6" ; note "ctaacttattgtag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1062636 1062709 . - . intron SPBC1734.02c ; systematic_id "SPBC1734.02c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1062704 1062709 . - . misc_feature unknown_748 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1062818 1062835 . - . misc_feature unknown_749 ; colour "6" ; note "ctaattgatttaattaag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1062818 1062873 . - . intron SPBC1734.02c ; systematic_id "SPBC1734.02c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1062868 1062873 . - . misc_feature unknown_750 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1062942 1062955 . - . misc_feature unknown_751 ; colour "6" ; note "ctaactatttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1062942 1062956 . - . misc_feature unknown_752 ; colour "6" ; note "ctaactatttgtag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1062942 1062995 . - . intron SPBC1734.02c ; systematic_id "SPBC1734.02c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1062990 1062995 . - . misc_feature unknown_753 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1063163 1063182 . - . misc_feature unknown_754 ; colour "6" ; note "ttaataattcatactttcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1063163 1063218 . - . intron SPBC1734.02c ; systematic_id "SPBC1734.02c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1063213 1063218 . - . misc_feature unknown_755 ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1063275 1063287 . - . misc_feature unknown_756 ; colour "6" ; note "ctaactgtataaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1063275 1063289 . - . misc_feature unknown_757 ; colour "6" ; note "ctaactgtataaaag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1063275 1063323 . - . intron SPBC1734.02c ; systematic_id "SPBC1734.02c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1063318 1063323 . - . misc_feature unknown_758 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1063376 1063440 . - . mRNA SPBC1734.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.02c" ; systematic_id "SPBC1734.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1064319 1064340 . + . mRNA SPBC1734.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.03" ; systematic_id "SPBC1734.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1064341 1066401 . + . mRNA SPBC1734.03 ; systematic_id "SPBC1734.03" ; colour "7" ; gene "SPBC1734.03 ||| SPBC337.19" ; db_xref "SPD:37/37C06" ; synonym "SPBC337.19" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0004150; dihydroneopterin aldolase activity
GO:0004156; dihydropteroate synthase activity
GO:0003848; 2-amino-4-hydroxy-6- hydroxymethyldihydro pteridinediphosphokin aseactivity
GO:0009396; folic acid and derivative biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, trifunctional enzyme; cv=cat_act; date=19700101 ||| term=orthologous to S. cerevisiae YNL256W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; product "dihydropteroatesynthase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridinediphosphokinase/ dihydroneopterin aldolase (predicted)" ; EC_number "2.5.1.15 ||| 2.7.6.3 ||| 4.1.2.25" ;
chromosome2 GeneDB CDS 1064341 1066401 . + . mRNA SPBC1734.03 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1066402 1066408 . + . mRNA SPBC1734.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.03" ; systematic_id "SPBC1734.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1067069 1067091 . + . mRNA SPBC1734.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.04" ; systematic_id "SPBC1734.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1067092 1068384 . + . mRNA SPBC1734.04 ; systematic_id "SPBC1734.04" ; colour "2" ; db_xref "SPD:22/22E01" ; Alias "anp1" ; synonym "SPBC337.20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL036C and YML115C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005794; Golgi apparatus
GO:0000136; alpha-1,6-mannosyltransferase complex
GO:0006487; protein amino acid N-linked glycosylation
GO:0000137; Golgi cis cisterna
GO:0000138; Golgi trans cisterna" ; primary_name "anp1" ; product "mannosyltransferase complex subunit, Anp family (predicted)" ;
chromosome2 GeneDB CDS 1067092 1068384 . + . mRNA SPBC1734.04 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1068385 1068940 . + . mRNA SPBC1734.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.04" ; systematic_id "SPBC1734.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1069049 1069109 . - . mRNA SPBC1734.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.05c" ; systematic_id "SPBC1734.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1069110 1069942 . - . mRNA SPBC1734.05c ; systematic_id "SPBC1734.05c" ; colour "7" ; gene "spf31 ||| SPBC1734.05c" ; Alias "spf31" ; db_xref "SPD:10/10G08" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human DNAJC8 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spf31" ; product "DNAJ protein Spf31 (predicted)" ;
chromosome2 GeneDB CDS 1069110 1069688 . - . mRNA SPBC1734.05c ; colour "7" ;
chromosome2 GeneDB CDS 1069892 1069942 . - . mRNA SPBC1734.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 1069689 1069703 . - . misc_feature unknown_759 ; colour "6" ; note "ctaacctttacttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1069689 1069891 . - . intron SPBC1734.05c ; systematic_id "SPBC1734.05c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1069886 1069891 . - . misc_feature unknown_760 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1069941 1069982 . - . mRNA SPBC1734.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.05c" ; systematic_id "SPBC1734.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1070040 1070257 . + . mRNA SPBC1734.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.06" ; systematic_id "SPBC1734.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1070258 1071421 . + . mRNA SPBC1734.06 ; systematic_id "SPBC1734.06" ; colour "2" ; gene "rhp18 ||| SPBC1734.06" ; Alias "rhp18" ; db_xref "SPD:18/18D06" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0000790; nuclear chromatin
GO:0006301; postreplication repair
GO:0000077; DNA damage checkpoint
GO:0016567; protein ubiquitination
GO:0031144; proteasome localization" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20070212 ||| term=zinc finger protein; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=19700101 ||| term=SAP domain; date=19700101 ||| term=orthologous to S. cerevisiae YCR066W; date=19700101 ||| term=target is Cut8; db_xref=PMID:16096059; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=conditional|in_response_to_UV; allele=rad6-165; db_xref=PMID:11523791; date=20100709" ; primary_name "rhp18" ; product "Rad18 homolog Rhp18" ;
chromosome2 GeneDB CDS 1070258 1071421 . + . mRNA SPBC1734.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1071422 1071469 . + . mRNA SPBC1734.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.06" ; systematic_id "SPBC1734.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1071571 1073427 . - . mRNA SPBC1734.07c ; db_xref "SPD:36/36H06" ; systematic_id "SPBC1734.07c" ; colour "7" ; GO "GO:0006886; intracellular protein transport
GO:0030008; TRAPP complex
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006914; autophagy
GO:0030242; peroxisome degradation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1734.07c" ; product "TRAPP complex subunit Trs85 (predicted)" ;
chromosome2 GeneDB CDS 1071571 1073427 . - . mRNA SPBC1734.07c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1073426 1073557 . - . mRNA SPBC1734.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.07c" ; systematic_id "SPBC1734.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 1073869 1074074 . + . LTR unknown_761 ; note "Tf2-type LTR- fragment" ;
chromosome2 GeneDB 5'-UTR 1074380 1074398 . + . mRNA SPBC1734.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.08" ; systematic_id "SPBC1734.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1074399 1075795 . + . mRNA SPBC1734.08 ; systematic_id "SPBC1734.08" ; colour "2" ; gene "SPBC1734.08 ||| hse1" ; Alias "hse1" ; db_xref "SPD:32/32H12" ; GO "GO:0005768; endosome
GO:0045324; late endosome to vacuole transport
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0033565; ESCRT-0 complex
GO:0031321; prospore formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YHL002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "hse1" ; product "STAM like protein Hse1" ;
chromosome2 GeneDB CDS 1074399 1074526 . + . mRNA SPBC1734.08 ; colour "2" ;
chromosome2 GeneDB CDS 1074571 1074646 . + . mRNA SPBC1734.08 ; colour "2" ;
chromosome2 GeneDB CDS 1074820 1075039 . + . mRNA SPBC1734.08 ; colour "2" ;
chromosome2 GeneDB CDS 1075098 1075795 . + . mRNA SPBC1734.08 ; colour "2" ;
chromosome2 GeneDB misc_feature 1074527 1074532 . + . misc_feature unknown_762 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1074556 1074570 . + . misc_feature unknown_763 ; colour "6" ; note "ctaactggttggtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1074647 1074652 . + . misc_feature unknown_764 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1074804 1074819 . + . misc_feature unknown_765 ; colour "6" ; note "ctaacgtttgttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1075040 1075045 . + . misc_feature unknown_766 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1075086 1075097 . + . misc_feature unknown_767 ; colour "6" ; note "ctaacctcttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1075796 1075815 . + . mRNA SPBC1734.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.08" ; systematic_id "SPBC1734.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1076141 1076346 . + . mRNA SPBC1734.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.09" ; systematic_id "SPBC1734.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1076347 1077297 . + . mRNA SPBC1734.09 ; db_xref "SPD:13/13D03" ; systematic_id "SPBC1734.09" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0005462; UDP-N-acetylglucosamine transporter activity
GO:0015788; UDP-N-acetylglucosamine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1734.09" ; product "NST UDP-N-acetylglucosamine transporter (predicted)" ;
chromosome2 GeneDB CDS 1076347 1077297 . + . mRNA SPBC1734.09 ; colour "7" ;
chromosome2 GeneDB CDS_parts 1077439 1078918 . - . mRNA SPBC1734.10c ; db_xref "SPD:44/44G10" ; systematic_id "SPBC1734.10c" ; colour "7" ; GO "GO:0006397; mRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR141W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=ncRNA in intron; date=20110201" ; gene "SPBC1734.10c" ; product "mRNA processing protein (predicted)" ;
chromosome2 GeneDB CDS 1077439 1077966 . - . mRNA SPBC1734.10c ; colour "7" ;
chromosome2 GeneDB CDS 1078448 1078918 . - . mRNA SPBC1734.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 1077967 1077981 . - . misc_feature unknown_768 ; colour "6" ; note "ctaacaagattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_RNA 1078083 1078182 . - . misc_RNA SPNCRNA.498 ; systematic_id "SPNCRNA.498" ; controlled_curation "term=warning, ncRNA in intron; db_xref=PMID:18641648; date=20100426 ||| term=warning, new gene; db_xref=PMID:18641648; date=20100426" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB misc_feature 1078442 1078447 . - . misc_feature unknown_769 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1078917 1078950 . - . mRNA SPBC1734.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.10c" ; systematic_id "SPBC1734.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 1079189 1079526 . + . LTR unknown_770 ; note "tf2-type LTR" ;
chromosome2 GeneDB misc_RNA 1080092 1080445 . + . misc_RNA SPNCRNA.337 ; db_xref "PMID:18488015" ; synonym "SPNG1328" ; systematic_id "SPNCRNA.337" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 1081719 1082942 . + . mRNA SPBC1734.11 ; systematic_id "SPBC1734.11" ; colour "7" ; gene "SPBC1734.11 ||| mas5" ; Alias "mas5" ; db_xref "SPD:19/19E03" ; GO "GO:0005829; cytosol
GO:0030544; Hsp70 protein binding
GO:0030433; ER-associated protein catabolism
GO:0006626; protein targeting to mitochondrion
GO:0045047; protein targeting to ER
GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL064C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mas5" ; product "DNAJ domain protein Mas5 (predicted)" ;
chromosome2 GeneDB CDS 1081719 1082942 . + . mRNA SPBC1734.11 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1082943 1083291 . + . mRNA SPBC1734.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.11" ; systematic_id "SPBC1734.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1083570 1083584 . - . mRNA SPBC1734.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.12c" ; systematic_id "SPBC1734.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1083585 1085318 . - . mRNA SPBC1734.12c ; systematic_id "SPBC1734.12c" ; colour "7" ; gene "alg12 ||| SPBC1734.12c" ; Alias "alg12" ; db_xref "SPD:35/35G08" ; GO "GO:0005783; endoplasmic reticulum
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0006486; protein amino acid glycosylation
GO:0000009; alpha-1,6-mannosyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNR030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "alg12" ; product "alpha-1,6-mannosyltransferase for the addition of the mannose to dolichol-linked Man7GlcNAc2, Alg12 (predicted)" ;
chromosome2 GeneDB CDS 1083585 1084081 . - . mRNA SPBC1734.12c ; colour "7" ;
chromosome2 GeneDB CDS 1084127 1085111 . - . mRNA SPBC1734.12c ; colour "7" ;
chromosome2 GeneDB CDS 1085160 1085318 . - . mRNA SPBC1734.12c ; colour "7" ;
chromosome2 GeneDB misc_feature 1084082 1084094 . - . misc_feature unknown_771 ; colour "6" ; note "ctaacgtacttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1084121 1084126 . - . misc_feature unknown_772 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1085112 1085125 . - . misc_feature unknown_773 ; colour "6" ; note "ctcacatattttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1085112 1085159 . - . intron SPBC1734.12c ; systematic_id "SPBC1734.12c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1085151 1085156 . - . misc_feature unknown_774 ; colour "6" ; note "gtagtt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1085317 1085326 . - . mRNA SPBC1734.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.12c" ; systematic_id "SPBC1734.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1085876 1085935 . + . mRNA SPBC1734.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.13" ; systematic_id "SPBC1734.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1085936 1086920 . + . mRNA SPBC1734.13 ; systematic_id "SPBC1734.13" ; colour "7" ; gene "atp3 ||| SPBC1734.13" ; Alias "atp3" ; db_xref "SPD:14/14C07" ; GO "GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0005756; proton-transporting ATP synthase, central stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR039W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "atp3" ; product "F1-ATPase gamma subunit (predicted)" ;
chromosome2 GeneDB CDS 1085936 1086015 . + . mRNA SPBC1734.13 ; colour "7" ;
chromosome2 GeneDB CDS 1086095 1086920 . + . mRNA SPBC1734.13 ; colour "7" ;
chromosome2 GeneDB misc_feature 1086016 1086021 . + . misc_feature unknown_775 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1086078 1086094 . + . misc_feature unknown_776 ; colour "6" ; note "ctaacgattttttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_RNA 1086637 1087413 . - . misc_RNA SPNCRNA.567 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.567" ; synonym "SPNG2AF35" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB 3'-UTR 1086921 1087087 . + . mRNA SPBC1734.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.13" ; systematic_id "SPBC1734.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1087638 1088270 . - . mRNA SPBC1734.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.14c" ; systematic_id "SPBC1734.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1088271 1088778 . - . mRNA SPBC1734.14c ; systematic_id "SPBC1734.14c" ; colour "2" ; gene "suc1 ||| SPBC1734.14c" ; Alias "suc1" ; db_xref "SPD:39/39H05" ; GO "GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0007346; regulation of progression through mitotic cell cycle
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0000307; cyclin-dependent protein kinase holoenzyme complex
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:3031478; date=20100705" ; primary_name "suc1" ; product "cyclin-dependent protein kinase regulatory subunit Suc1" ;
chromosome2 GeneDB CDS 1088271 1088378 . - . mRNA SPBC1734.14c ; colour "2" ;
chromosome2 GeneDB CDS 1088430 1088574 . - . mRNA SPBC1734.14c ; colour "2" ;
chromosome2 GeneDB CDS 1088690 1088778 . - . mRNA SPBC1734.14c ; colour "2" ;
chromosome2 GeneDB misc_feature 1088379 1088393 . - . misc_feature unknown_777 ; colour "6" ; note "ctgacatttatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1088424 1088429 . - . misc_feature unknown_778 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1088575 1088590 . - . misc_feature unknown_779 ; colour "6" ; note "ctaatcgatgaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1088684 1088689 . - . misc_feature unknown_780 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1088777 1088794 . - . mRNA SPBC1734.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.14c" ; systematic_id "SPBC1734.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1088960 1089187 . + . mRNA SPBC1734.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.15" ; systematic_id "SPBC1734.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1089188 1090924 . + . mRNA SPBC1734.15 ; systematic_id "SPBC1734.15" ; colour "2" ; gene "rsc4 ||| brd1 ||| SPBC1734.15" ; Alias "rsc4" ; db_xref "SPD:33/33D03" ; synonym "brd1" ; GO "GO:0016586; RSC complex
GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, chromosome segregation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to Brefeldin A ; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=bromodomain; db_xref=PMID:7565614; date=19700101 ||| term=orthologous to S. cerevisiae YKR008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110 ||| term=gene expression, transcriptionally regulates genes involved in vesicle mediated transport; db_xref=PMID:18622392; cv=gene_ex; date=20080717" ; primary_name "rsc4" ; product "RSC complex subunit Rsc4" ;
chromosome2 GeneDB CDS 1089188 1089190 . + . mRNA SPBC1734.15 ; colour "2" ;
chromosome2 GeneDB CDS 1089239 1089321 . + . mRNA SPBC1734.15 ; colour "2" ;
chromosome2 GeneDB CDS 1089382 1090924 . + . mRNA SPBC1734.15 ; colour "2" ;
chromosome2 GeneDB misc_feature 1089191 1089196 . + . misc_feature unknown_781 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1089226 1089238 . + . misc_feature unknown_782 ; colour "6" ; note "ctaatatttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1089322 1089327 . + . misc_feature unknown_783 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1089361 1089381 . + . misc_feature unknown_784 ; colour "6" ; note "ctaataatttatttaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1090925 1090940 . + . mRNA SPBC1734.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.15" ; systematic_id "SPBC1734.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1091046 1091097 . - . mRNA SPBC1734.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.16c" ; systematic_id "SPBC1734.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1091098 1094653 . - . mRNA SPBC1734.16c ; systematic_id "SPBC1734.16c" ; colour "2" ; gene "pst3 ||| SPBC1734.16c" ; Alias "pst3" ; db_xref "SPD:30/30E08" ; GO "GO:0016575; histone deacetylation
GO:0006355; regulation of transcription, DNA- dependent
GO:0000790; nuclear chromatin
GO:0006342; chromatin silencing
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling
GO:0006303; double-strand break repair via nonhomologous end joining" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL004W; date=19700101 ||| term=SIN3 family co-repressor; date=20071031 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pst3" ; product "SIN3 family co-repressor Pst3" ;
chromosome2 GeneDB CDS 1091098 1094516 . - . mRNA SPBC1734.16c ; colour "2" ;
chromosome2 GeneDB CDS 1094608 1094653 . - . mRNA SPBC1734.16c ; colour "2" ;
chromosome2 GeneDB misc_feature 1094517 1094528 . - . misc_feature unknown_785 ; colour "6" ; note "ctaatattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1094602 1094607 . - . misc_feature unknown_786 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1094652 1094733 . - . mRNA SPBC1734.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1734.16c" ; systematic_id "SPBC1734.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1095282 1095357 . + . mRNA SPBC1709.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.01" ; systematic_id "SPBC1709.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1095358 1098185 . + . mRNA SPBC1709.01 ; systematic_id "SPBC1709.01" ; colour "2" ; gene "chs2 ||| SPBC1709.01 ||| SPBC1734.17" ; Alias "chs2" ; db_xref "SPD:47/47C07" ; synonym "SPBC1734.17" ; GO "; barrier septum
GO:0005887; integral to plasma membrane
GO:0004100; chitin synthase activity
GO:0004100; chitin synthase activity
GO:0005515; protein binding
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0000915; cytokinesis, contractile ring formation
GO:0000915; cytokinesis, contractile ring formation
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization dependent on F- actin; db_xref=PMID:16772338; date=20060620 ||| term=localization dependent on exocytosis; db_xref=PMID:16772338; date=20060620 ||| term=localization dependent on assembled CAR; db_xref=PMID:16772338; date=20060620 ||| term=gene expression, expression cell cycle regulated; db_xref=PMID:15277753; cv=gene_ex; date=20060620 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15277753; date=20060620 ||| term=orthologous to S. cerevisiae YBR038W and YNL192W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "chs2" ; product "chitin synthase homolog Chs2" ;
chromosome2 GeneDB CDS 1095358 1097357 . + . mRNA SPBC1709.01 ; colour "2" ;
chromosome2 GeneDB CDS 1097405 1098185 . + . mRNA SPBC1709.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 1097358 1097363 . + . misc_feature unknown_787 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1097393 1097404 . + . misc_feature unknown_788 ; colour "6" ; note "ctaattgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1097610 1102256 . + . misc_feature unknown_789 ; note "nominal overlap with cosmid SPBC1709, EM:AL031852 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 1098255 1098299 . - . mRNA SPBC1709.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.02c" ; systematic_id "SPBC1709.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1098300 1101472 . - . mRNA SPBC1709.02c ; systematic_id "SPBC1709.02c" ; colour "2" ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:30/30B09" ; Alias "vrs1" ; synonym "vas1 ||| SPBC1734.18c ||| ValRS1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR094W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0004832; valine-tRNA ligase activity
GO:0006438; valyl-tRNA aminoacylation" ; primary_name "vrs1" ; product "cytoplasmic valine-tRNA ligase Vrs1/Vas1" ; EC_number "6.1.1.9" ;
chromosome2 GeneDB CDS 1098300 1101080 . - . mRNA SPBC1709.02c ; colour "2" ;
chromosome2 GeneDB CDS 1101212 1101285 . - . mRNA SPBC1709.02c ; colour "2" ;
chromosome2 GeneDB CDS 1101345 1101396 . - . mRNA SPBC1709.02c ; colour "2" ;
chromosome2 GeneDB CDS 1101437 1101472 . - . mRNA SPBC1709.02c ; colour "2" ;
chromosome2 GeneDB misc_feature 1101081 1101096 . - . misc_feature unknown_790 ; colour "6" ; note "ctaatcattttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1101206 1101211 . - . misc_feature unknown_791 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1101286 1101300 . - . misc_feature unknown_792 ; colour "6" ; note "ctaacatctatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1101339 1101344 . - . misc_feature unknown_793 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1101397 1101409 . - . misc_feature unknown_794 ; colour "6" ; note "ctaataattgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1101431 1101436 . - . misc_feature unknown_795 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1101471 1101500 . - . mRNA SPBC1709.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.02c" ; systematic_id "SPBC1709.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1102325 1102448 . + . mRNA SPBC1709.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.03" ; systematic_id "SPBC1709.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1102449 1103683 . + . mRNA SPBC1709.03 ; db_xref "SPD:19/19F11" ; systematic_id "SPBC1709.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to D. hansenii DEHA0G25432g; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC1709.03" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1102449 1103075 . + . mRNA SPBC1709.03 ; colour "10" ;
chromosome2 GeneDB CDS 1103114 1103683 . + . mRNA SPBC1709.03 ; colour "10" ;
chromosome2 GeneDB misc_feature 1103076 1103081 . + . misc_feature unknown_796 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1103102 1103113 . + . misc_feature unknown_797 ; colour "6" ; note "ttaacaccttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1103684 1103699 . + . mRNA SPBC1709.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.03" ; systematic_id "SPBC1709.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1103699 1103769 . - . mRNA SPBC1709.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.04c" ; systematic_id "SPBC1709.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1103770 1104607 . - . mRNA SPBC1709.04c ; systematic_id "SPBC1709.04c" ; colour "2" ; gene "cyp3 ||| SPBC1709.04c" ; Alias "cyp3" ; db_xref "SPD:11/11A01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003755; peptidyl-prolyl cis-trans isomerase activity
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005634; nucleus" ; primary_name "cyp3" ; product "cyclophilin family peptidyl-prolyl cis- trans isomerase Cyp3" ; EC_number "5.2.1.8" ;
chromosome2 GeneDB CDS 1103770 1104063 . - . mRNA SPBC1709.04c ; colour "2" ;
chromosome2 GeneDB CDS 1104141 1104208 . - . mRNA SPBC1709.04c ; colour "2" ;
chromosome2 GeneDB CDS 1104260 1104306 . - . mRNA SPBC1709.04c ; colour "2" ;
chromosome2 GeneDB CDS 1104359 1104376 . - . mRNA SPBC1709.04c ; colour "2" ;
chromosome2 GeneDB CDS 1104461 1104525 . - . mRNA SPBC1709.04c ; colour "2" ;
chromosome2 GeneDB CDS 1104578 1104607 . - . mRNA SPBC1709.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 1104064 1104078 . - . misc_feature unknown_798 ; colour "6" ; note "ttaactgatgattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1104135 1104140 . - . misc_feature unknown_799 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1104209 1104228 . - . misc_feature unknown_800 ; colour "6" ; note "ctaattattaaaatcaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1104254 1104259 . - . misc_feature unknown_801 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1104377 1104392 . - . misc_feature unknown_802 ; colour "6" ; note "ctgacattgaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1104455 1104460 . - . misc_feature unknown_803 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1104526 1104542 . - . misc_feature unknown_804 ; colour "6" ; note "ctaattttggacaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1104572 1104577 . - . misc_feature unknown_805 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1104606 1104686 . - . mRNA SPBC1709.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.04c" ; systematic_id "SPBC1709.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1104933 1105933 . + . misc_RNA SPNCRNA.338 ; db_xref "PMID:18488015" ; synonym "SPNG1332" ; systematic_id "SPNCRNA.338" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 1106447 1106455 . + . mRNA SPBC1709.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.05" ; systematic_id "SPBC1709.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1106456 1108297 . + . mRNA SPBC1709.05 ; systematic_id "SPBC1709.05" ; colour "2" ; gene "sks2 ||| hsc1 ||| SPBC1709.05" ; note "ask2 is the name which was given to the spurious orf on the opposite strand" ; Alias "sks2" ; db_xref "SPD:33/33E06" ; synonym "hsc1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, resistance to K- 252a; qualifier=overexpression; db_xref=PMID:9161410; cv=phenotype; date=20090729 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9161410; cv=phenotype; date=20090729 ||| term=orthologous to S. cerevisiae YDL229W and YNL209W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc functional group, chaperone; cv=m_f_g; date=20090729" ; GO "GO:0007346; regulation of mitotic cell cycle
GO:0051083; 'de novo' cotranslational protein folding
GO:0016887; ATPase activity
GO:0051082; unfolded protien binding
GO:0061077; chaperone-mediated protein folding" ; primary_name "sks2" ; product "heat shock protein, ribosome associated molecular chaperone Sks2" ;
chromosome2 GeneDB CDS 1106456 1108297 . + . mRNA SPBC1709.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1108298 1108481 . + . mRNA SPBC1709.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.05" ; systematic_id "SPBC1709.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1108700 1108727 . + . mRNA SPBC1709.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.06" ; systematic_id "SPBC1709.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1108728 1110446 . + . mRNA SPBC1709.06 ; systematic_id "SPBC1709.06" ; colour "7" ; gene "dus2 ||| SPBC1709.06" ; Alias "dus2" ; db_xref "SPD:45/45F04" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0017150; tRNA dihydrouridine synthase activity
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=19700101 ||| term=orthologous to S. cerevisiae YNR015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dus2" ; product "tRNA dihydrouridine synthase Dus2 (predicted)" ;
chromosome2 GeneDB CDS 1108728 1108896 . + . mRNA SPBC1709.06 ; colour "7" ;
chromosome2 GeneDB CDS 1109135 1109784 . + . mRNA SPBC1709.06 ; colour "7" ;
chromosome2 GeneDB CDS 1109826 1110446 . + . mRNA SPBC1709.06 ; colour "7" ;
chromosome2 GeneDB misc_feature 1108897 1108902 . + . misc_feature unknown_806 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1109116 1109134 . + . misc_feature unknown_807 ; colour "6" ; note "ttgactcaatttaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1109785 1109790 . + . misc_feature unknown_808 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1109812 1109825 . + . misc_feature unknown_809 ; colour "6" ; note "ctaattgttgatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1110447 1110462 . + . mRNA SPBC1709.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.06" ; systematic_id "SPBC1709.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1110890 1112001 . + . mRNA SPBC1709.07 ; systematic_id "SPBC1709.07" ; colour "7" ; gene "SPBC1709.07 ||| erg27" ; Alias "erg27" ; db_xref "SPD:17/17E04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006696; ergosterol biosynthesis
GO:0000253; 3-keto sterol reductase activity
GO:0005789; endoplasmic reticulum membrane" ; primary_name "erg27" ; product "3-keto sterol reductase (predicted)" ; reserved_name "erg27" ;
chromosome2 GeneDB CDS 1110890 1110930 . + . mRNA SPBC1709.07 ; colour "7" ;
chromosome2 GeneDB CDS 1110978 1111416 . + . mRNA SPBC1709.07 ; colour "7" ;
chromosome2 GeneDB CDS 1111465 1112001 . + . mRNA SPBC1709.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 1110931 1110936 . + . misc_feature unknown_810 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome2 GeneDB intron 1110931 1110977 . + . intron SPBC1709.07 ; systematic_id "SPBC1709.07" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1110957 1110977 . + . misc_feature unknown_811 ; colour "6" ; note "aacacagttaatgattacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1111417 1111422 . + . misc_feature unknown_812 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 1111417 1111465 . + . intron SPBC1709.07 ; systematic_id "SPBC1709.07" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1111451 1111464 . + . misc_feature unknown_813 ; colour "6" ; note "ctaatttacataag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1112002 1112223 . + . mRNA SPBC1709.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.07" ; systematic_id "SPBC1709.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1112735 1113159 . + . mRNA SPBC1709.20 ; systematic_id "SPBC1709.20" ; colour "7" ; gene "pop8 ||| SPBC1709.20" ; Alias "pop8" ; db_xref "SPD:51/51H08" ; GO "GO:0000172; ribonuclease MRP complex
GO:0005655; nucleolar ribonuclease P complex
GO:0006364; rRNA processing
GO:0008033; tRNA processing
GO:0004526; ribonuclease P activity
GO:0000171; ribonuclease MRP activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL018C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "pop8" ; product "RNase P and RNase MRP subunit Pop8 (predicted)" ;
chromosome2 GeneDB CDS 1112735 1112787 . + . mRNA SPBC1709.20 ; colour "7" ;
chromosome2 GeneDB CDS 1112829 1112987 . + . mRNA SPBC1709.20 ; colour "7" ;
chromosome2 GeneDB CDS 1113045 1113159 . + . mRNA SPBC1709.20 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1113323 1113338 . + . mRNA SPBC1709.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.08" ; systematic_id "SPBC1709.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1113339 1117664 . + . mRNA SPBC1709.08 ; systematic_id "SPBC1709.08" ; colour "2" ; gene "cft1 ||| SPBC1709.08" ; Alias "cft1" ; db_xref "SPD:39/39E05" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0005849; mRNA cleavage factor complex
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR301W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cft1" ; product "cleavage factor one Cft1 (predicted)" ;
chromosome2 GeneDB CDS 1113339 1117664 . + . mRNA SPBC1709.08 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1117665 1117670 . + . mRNA SPBC1709.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.08" ; systematic_id "SPBC1709.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1118492 1118560 . + . mRNA SPBC1709.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.09" ; systematic_id "SPBC1709.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1118561 1119295 . + . mRNA SPBC1709.09 ; systematic_id "SPBC1709.09" ; colour "2" ; gene "SPBC1709.09" ; Alias "rrf1" ; db_xref "SPD:43/43A07" ; GO "GO:0005739; mitochondrion
GO:0008079; translation termination factor activity
GO:0070126; mitochondrial translational termination
GO:0032790; ribosome disassembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR038W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complemented by human MRR1; db_xref=PMID:18782833; date=20101012 ||| term=human MRR1 ortholog; db_xref=PMID:18782833; date=20101012 ||| term=phenotype, respiratory defect; db_xref=PMID:18782833; date=20101012" ; primary_name "rrf1" ; product "mitochondrial translation termination factor Rrf1" ;
chromosome2 GeneDB CDS 1118561 1119295 . + . mRNA SPBC1709.09 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1119296 1119315 . + . mRNA SPBC1709.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.09" ; systematic_id "SPBC1709.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1119485 1119851 . - . mRNA SPBC1709.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.10c" ; systematic_id "SPBC1709.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1119852 1120181 . - . mRNA SPBC1709.10c ; systematic_id "SPBC1709.10c" ; colour "2" ; gene "SPBC1709.10c ||| atx1" ; Alias "atx1" ; db_xref "SPD:01/01H02" ; GO "; copper chaperone activity
GO:0005515; protein binding
GO:0006878; copper ion homeostasis
GO:0015680; intracellular copper ion transport
GO:0034759; regulation of transmembrane iron ion transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL259C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=19700101 ||| term=target is SPBC29A3.01; qualifier=predicted; date=19700101 ||| term=target is Cao1; db_xref=PMID:18723604; date=20080901" ; primary_name "atx1" ; product "copper chaperone Atx1" ;
chromosome2 GeneDB CDS 1119852 1119982 . - . mRNA SPBC1709.10c ; colour "2" ;
chromosome2 GeneDB CDS 1120106 1120181 . - . mRNA SPBC1709.10c ; colour "2" ;
chromosome2 GeneDB misc_feature 1119983 1120004 . - . misc_feature unknown_814 ; colour "6" ; note "ctaattaagtaatgtcgagtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1120100 1120105 . - . misc_feature unknown_815 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1120180 1120308 . - . mRNA SPBC1709.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.10c" ; systematic_id "SPBC1709.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 1120415 1120670 . + . LTR unknown_816 ; note "Tf1-type LTR; partial" ;
chromosome2 GeneDB 3'-UTR 1120750 1120944 . - . mRNA SPBC1709.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.11c" ; systematic_id "SPBC1709.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1120945 1121949 . - . mRNA SPBC1709.11c ; systematic_id "SPBC1709.11c" ; colour "2" ; gene "png2 ||| SPBC1709.11c" ; Alias "png2" ; db_xref "SPD:14/14G10" ; GO "GO:0033698; Clr6 histone deacetylase complex I/I'
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0016568; chromatin modification
GO:0000123; histone acetyltransferase complex
GO:0035064; methylated histone residue binding
GO:0016573; histone acetylation
GO:0070210; Rpd3L-Expanded
GO:0019787; small conjugating protein ligase activity
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YHR090C and YNL097C and YOR064C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "png2" ; product "ING family homolog Png2" ;
chromosome2 GeneDB CDS 1120945 1121738 . - . mRNA SPBC1709.11c ; colour "2" ;
chromosome2 GeneDB CDS 1121786 1121857 . - . mRNA SPBC1709.11c ; colour "2" ;
chromosome2 GeneDB CDS 1121898 1121949 . - . mRNA SPBC1709.11c ; colour "2" ;
chromosome2 GeneDB misc_feature 1121739 1121753 . - . misc_feature unknown_817 ; colour "6" ; note "ttaacaaaatcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1121780 1121785 . - . misc_feature unknown_818 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1121858 1121871 . - . misc_feature unknown_819 ; colour "6" ; note "ttaacattttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1121892 1121897 . - . misc_feature unknown_820 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1121948 1121959 . - . mRNA SPBC1709.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.11c" ; systematic_id "SPBC1709.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1122828 1124285 . + . mRNA SPBC1709.12 ; systematic_id "SPBC1709.12" ; colour "7" ; note "GO tracable author statements (TAS) (pers. comm. Yasmine Mamnun and Takashi Toda)" ; Alias "rid1" ; db_xref "SPD:22/22G09" ; GO "GO:0005634; nucleus
GO:0031097; medial ring
GO:0051020; GTPase binding
GO:0017048; Rho GTPase binding
GO:0030036; actin cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to M. grisea MG01308.4; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, RIng- localized protein with homology to Diaphanous GTPase- binding domain; cv=name_description; date=20091119 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "rid1" ; product "GTPase binding protein Rid1 (predicted)" ; reserved_name "rid1" ;
chromosome2 GeneDB CDS 1122828 1123246 . + . mRNA SPBC1709.12 ; colour "7" ;
chromosome2 GeneDB CDS 1123385 1123532 . + . mRNA SPBC1709.12 ; colour "7" ;
chromosome2 GeneDB CDS 1123601 1124133 . + . mRNA SPBC1709.12 ; colour "7" ;
chromosome2 GeneDB CDS 1124183 1124285 . + . mRNA SPBC1709.12 ; colour "7" ;
chromosome2 GeneDB misc_feature 1123247 1123252 . + . misc_feature unknown_821 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1123370 1123384 . + . misc_feature unknown_822 ; colour "6" ; note "ctaactgcaatacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1123533 1123538 . + . misc_feature unknown_823 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1123585 1123600 . + . misc_feature unknown_824 ; colour "6" ; note "ctaacgtttttcctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1124286 1124653 . + . mRNA SPBC1709.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.12" ; systematic_id "SPBC1709.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact ||| refined to match gene structure in PMID:21270388" ;
chromosome2 GeneDB 3'-UTR 1124433 1124443 . - . mRNA SPBC1709.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.13c" ; systematic_id "SPBC1709.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1124444 1126087 . - . mRNA SPBC1709.13c ; systematic_id "SPBC1709.13c" ; colour "2" ; gene "set10 ||| SPBC1709.13c" ; Alias "set10" ; db_xref "SPD:34/34E07" ; GO "GO:0016279; protein-lysine N-methyltransferase activity
GO:0006479; protein amino acid methylation
GO:0042254; ribosome biogenesis
GO:0018027; peptidyl-lysine dimethylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL208W and YHL039W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Rpl2301; db_xref=PMID:18292091; date=20100630 ||| term=target is Rpl2302; db_xref=PMID:18292091; date=20100630" ; primary_name "set10" ; product "ribosomal lysine methyltransferase Set10" ;
chromosome2 GeneDB CDS 1124444 1126087 . - . mRNA SPBC1709.13c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1126358 1126627 . + . mRNA SPBC1709.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.14" ; systematic_id "SPBC1709.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1126628 1127840 . + . mRNA SPBC1709.14 ; db_xref "SPD:19/19C09" ; systematic_id "SPBC1709.14" ; colour "7" ; GO "GO:0000224; peptide-N4-(N-acetyl-beta- glucosaminyl)asparagineamidase activity
GO:0006517; protein deglycosylation
GO:0006515; misfolded or incompletely synthesized protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1709.14" ; product "peptide N-glycanase (predicted)" ;
chromosome2 GeneDB CDS 1126628 1126954 . + . mRNA SPBC1709.14 ; colour "7" ;
chromosome2 GeneDB CDS 1127030 1127206 . + . mRNA SPBC1709.14 ; colour "7" ;
chromosome2 GeneDB CDS 1127253 1127412 . + . mRNA SPBC1709.14 ; colour "7" ;
chromosome2 GeneDB CDS 1127458 1127496 . + . mRNA SPBC1709.14 ; colour "7" ;
chromosome2 GeneDB CDS 1127542 1127840 . + . mRNA SPBC1709.14 ; colour "7" ;
chromosome2 GeneDB misc_feature 1126955 1126960 . + . misc_feature unknown_825 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1127016 1127029 . + . misc_feature unknown_826 ; colour "6" ; note "ttgacaatgtgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1127207 1127212 . + . misc_feature unknown_827 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1127238 1127252 . + . misc_feature unknown_828 ; colour "6" ; note "ctaacattttcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1127413 1127418 . + . misc_feature unknown_829 ; colour "6" ; note "gtagag, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1127445 1127457 . + . misc_feature unknown_830 ; colour "6" ; note "ctaacagcattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1127497 1127502 . + . misc_feature unknown_831 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1127527 1127541 . + . misc_feature unknown_832 ; colour "6" ; note "ctaatgcaaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1127841 1127896 . + . mRNA SPBC1709.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.14" ; systematic_id "SPBC1709.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1127954 1127968 . - . mRNA SPBC1709.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.15c" ; systematic_id "SPBC1709.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1127969 1130425 . - . mRNA SPBC1709.15c ; systematic_id "SPBC1709.15c" ; colour "7" ; gene "cft2 ||| SPBC1709.15c" ; Alias "cft2" ; db_xref "SPD:28/28G11" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0005849; mRNA cleavage factor complex
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR115W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cft2" ; product "cleavage factor two Cft2/polyadenylation factor CPSF-73 (predicted)" ;
chromosome2 GeneDB CDS 1127969 1129989 . - . mRNA SPBC1709.15c ; colour "7" ;
chromosome2 GeneDB CDS 1130053 1130425 . - . mRNA SPBC1709.15c ; colour "7" ;
chromosome2 GeneDB misc_feature 1129990 1130005 . - . misc_feature unknown_833 ; colour "6" ; note "ctaattcatgatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1130047 1130052 . - . misc_feature unknown_834 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 1130700 1130895 . - . mRNA SPBC1709.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.16c" ; systematic_id "SPBC1709.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1130896 1132036 . - . mRNA SPBC1709.16c ; db_xref "SPD:18/18A06" ; systematic_id "SPBC1709.16c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBC1709.16c" ; product "aromatic ring-opening dioxygenase (predicted)" ; EC_number "1.13.11.-" ;
chromosome2 GeneDB CDS 1130896 1131078 . - . mRNA SPBC1709.16c ; colour "10" ;
chromosome2 GeneDB CDS 1131152 1131460 . - . mRNA SPBC1709.16c ; colour "10" ;
chromosome2 GeneDB CDS 1131516 1131823 . - . mRNA SPBC1709.16c ; colour "10" ;
chromosome2 GeneDB CDS 1131979 1132036 . - . mRNA SPBC1709.16c ; colour "10" ;
chromosome2 GeneDB misc_feature 1131079 1131096 . - . misc_feature unknown_835 ; colour "6" ; note "ctaatttcgaacctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1131146 1131151 . - . misc_feature unknown_836 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1131461 1131472 . - . misc_feature unknown_837 ; colour "6" ; note "ctaacccaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1131510 1131515 . - . misc_feature unknown_838 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1131824 1131853 . - . misc_feature unknown_839 ; colour "6" ; note "ttgatactagaataactaaaaattgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1131973 1131978 . - . misc_feature unknown_840 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1132035 1132298 . - . mRNA SPBC1709.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.16c" ; systematic_id "SPBC1709.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1132170 1134042 . + . mRNA SPBC1709.17 ; db_xref "SPD:26/26C12" ; systematic_id "SPBC1709.17" ; colour "7" ; GO "GO:0004326; tetrahydrofolylpolyglutamate synthase activity
GO:0006730; one-carbon compound metabolism
GO:0009396; folic acid and derivative biosynthesis
GO:0005739; mitochondrion
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR241W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1709.17" ; product "folylpolyglutamate synthase (predicted)" ;
chromosome2 GeneDB CDS 1132170 1132253 . + . mRNA SPBC1709.17 ; colour "7" ;
chromosome2 GeneDB CDS 1132300 1132431 . + . mRNA SPBC1709.17 ; colour "7" ;
chromosome2 GeneDB CDS 1132741 1134042 . + . mRNA SPBC1709.17 ; colour "7" ;
chromosome2 GeneDB misc_feature 1132254 1132259 . + . misc_feature unknown_841 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1132283 1132299 . + . misc_feature unknown_842 ; colour "6" ; note "ctaactaatgctttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1132432 1132437 . + . misc_feature unknown_843 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1132723 1132740 . + . misc_feature unknown_844 ; colour "6" ; note "tactaactaataaatctcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1134043 1134114 . + . mRNA SPBC1709.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.17" ; systematic_id "SPBC1709.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1134444 1134498 . + . mRNA SPBC1709.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.18" ; systematic_id "SPBC1709.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1134499 1135377 . + . mRNA SPBC1709.18 ; systematic_id "SPBC1709.18" ; colour "2" ; gene "tif452 ||| SPBC1709.18 ||| SPBC409.01" ; Alias "tif452" ; db_xref "SPD:32/32A06" ; synonym "SPBC409.01" ; GO "GO:0016281; eukaryotic translation initiation factor 4F complex
GO:0000339; RNA cap binding
GO:0003743; translation initiation factor activity
GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0033554; cellular response to stress
GO:0006413; translational initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tif452" ; product "translation initiation factor eIF4E 4F complex subunit" ;
chromosome2 GeneDB CDS 1134499 1134975 . + . mRNA SPBC1709.18 ; colour "2" ;
chromosome2 GeneDB CDS 1135066 1135205 . + . mRNA SPBC1709.18 ; colour "2" ;
chromosome2 GeneDB CDS 1135263 1135377 . + . mRNA SPBC1709.18 ; colour "2" ;
chromosome2 GeneDB misc_feature 1134892 1137098 . + . misc_feature unknown_845 ; note "nominal overlap with cosmid SPBC409, EM:AL109822 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 1134976 1134981 . + . misc_feature unknown_846 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1135049 1135065 . + . misc_feature unknown_847 ; colour "6" ; note "ttaacgtatggaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1135206 1135211 . + . misc_feature unknown_848 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 1135206 1135262 . + . intron SPBC1709.18 ; systematic_id "SPBC1709.18" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1135248 1135262 . + . misc_feature unknown_849 ; colour "6" ; note "ctaacaaacatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1135378 1135619 . + . misc_feature unknown_850 ; note "mRNA from AU013737 ||| 3'UTR mapped fully on cosmid c1709" ;
chromosome2 GeneDB 3'-UTR 1135378 1135619 . + . mRNA SPBC1709.18 ; Alias "tif452" ; ID "SPBC1709.18" ; systematic_id "SPBC1709.18" ; primary_name "tif452" ; note "mRNA from AU013737" ;
chromosome2 GeneDB 3'-UTR 1136696 1136806 . - . mRNA SPBC1709.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.19c" ; systematic_id "SPBC1709.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1136807 1137589 . - . mRNA SPBC1709.19c ; systematic_id "SPBC1709.19c" ; colour "7" ; gene "SPBC1709.19c" ; obsolete_name "SPBC409.02c" ; db_xref "SPD:09/09G07" ; controlled_curation "term=orthologous to S. cerevisiae YKL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005759; mitochondrial matrix
GO:0006879; iron ion homeostasis" ; product "NifU-like protein (predicted)" ;
chromosome2 GeneDB CDS 1136807 1137589 . - . mRNA SPBC1709.19c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1137588 1137744 . - . mRNA SPBC1709.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1709.19c" ; systematic_id "SPBC1709.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1137906 1138055 . + . mRNA SPBC409.03 ; Alias "swi5" ; ID "SPBC409.03" ; db_xref "EMBL:AB089499" ; systematic_id "SPBC409.03" ; primary_name "swi5" ;
chromosome2 GeneDB CDS_parts 1138056 1138530 . + . mRNA SPBC409.03 ; systematic_id "SPBC409.03" ; colour "2" ; gene "swi5 ||| SPBC409.03" ; note "the gene predicted of YHR079C-A was extended to detect this similarity" ; Alias "swi5" ; db_xref "SPD:42/42B08" ; controlled_curation "term=orthologous to S. cerevisiae YHR079C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, focus formation at heterochromatic regions, Swi2_dependent; db_xref=PMID:17304215; date=20090210 ||| term=misc, focus formation at DNA damage sites, Swi5_dependent; db_xref=PMID:17304215; date=20090210 ||| term=misc, accumulation and persistence of Swi5 foci in rhp54 delta cells; db_xref=PMID:17304215; date=20090210 ||| term=misc, facilitates Rhp51 assembly at damage sites independently of Rhp57; db_xref=PMID:17304215; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant produced each recombination class (gene conversion, crossover and long tract gene conversion) at frequencies similar to that of the rhp51delta single mutant; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, increased frequency of long tract gene conversion in the rhp57 delta single mutant was suppressed in the swi5delta rhp57delta double mutant, to a level similar to that observed in the rhp51 mutant; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant showed a repair profile very similar to that to the rhp51deltasingle mutant; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=phenotype, DNA recombination defects, gene conversion, reduced; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, long tract gene conversion, increased; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210" ; GO "GO:0032798; Swi5-Sfr1 complex
GO:0034974; Swi5-Swi2 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000730; DNA recombinase assembly
GO:0000724; double-strand break repair via homologous recombination
GO:0007533; mating type switching
GO:0000711; meiotic DNA repair synthesis
GO:0000709; meiotic joint molecule formation
GO:0000709; meiotic joint molecule formation
GO:0007131; meiotic recombination" ; primary_name "swi5" ; product "Swi5 protein" ;
chromosome2 GeneDB CDS 1138056 1138064 . + . mRNA SPBC409.03 ; colour "2" ;
chromosome2 GeneDB CDS 1138117 1138202 . + . mRNA SPBC409.03 ; colour "2" ;
chromosome2 GeneDB CDS 1138368 1138530 . + . mRNA SPBC409.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 1138065 1138070 . + . misc_feature unknown_851 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB intron 1138065 1138116 . + . intron SPBC409.03 ; db_xref "EMBL:AB089499" ; systematic_id "SPBC409.03" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1138100 1138116 . + . misc_feature unknown_852 ; colour "6" ; note "ctgatgaattactgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1138203 1138208 . + . misc_feature unknown_853 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 1138203 1138367 . + . intron SPBC409.03 ; Alias "swi5" ; db_xref "EMBL:AB089499" ; systematic_id "SPBC409.03" ; primary_name "swi5" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1138352 1138367 . + . misc_feature unknown_854 ; colour "6" ; note "ttgacaaatgatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1138531 1138723 . + . mRNA SPBC409.03 ; Alias "swi5" ; ID "SPBC409.03" ; db_xref "EMBL:AB089499" ; systematic_id "SPBC409.03" ; primary_name "swi5" ;
chromosome2 GeneDB CDS_parts 1138748 1139527 . - . mRNA SPBC409.04c ; systematic_id "SPBC409.04c" ; colour "2" ; gene "mis12 ||| SPBC409.04c" ; db_xref "SPD:09/09G06" ; Alias "mis12" ; GO "GO:0000818; MIND complex
GO:0031617; NMS complex
GO:0000779; condensed chromosome, pericentric region
GO:0000778; condensed nuclear chromosome kinetochore
GO:0000939; inner kinetochore of condensed chromosome
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0000022; mitotic spindle elongation
GO:0019236; response to pheromone" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10398680; date=20100120 ||| term=phenotype, cut; db_xref=PMID:10398680; date=20100730 ||| term=orthologous to S. cerevisiae YAL034W-A; date=19700101 ||| term=human hMis12 ortholog; date=20080602 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis12" ; product "kinetochore protein Mis12" ;
chromosome2 GeneDB CDS 1138748 1139527 . - . mRNA SPBC409.04c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1139526 1139613 . - . mRNA SPBC409.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.04c" ; systematic_id "SPBC409.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1140148 1140805 . + . mRNA SPBC409.05 ; systematic_id "SPBC409.05" ; colour "2" ; gene "skp1 ||| psh1 ||| sph1 ||| SPBC409.05" ; Alias "skp1" ; db_xref "SPD:31/31G07" ; synonym "psh1 ||| sph1" ; GO "GO:0043291; RAVE complex
GO:0019005; SCF ubiquitin ligase complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle
GO:0042493; response to drug
GO:0007035; vacuolar acidification
GO:0070072; vacuolar proton-transporting two- sector ATPase complex assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YDR328C; date=19700101 ||| term=human SKP1A ortholog; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "skp1" ; product "SCF ubiquitin ligase complex subunit Skp1" ;
chromosome2 GeneDB CDS 1140148 1140196 . + . mRNA SPBC409.05 ; colour "2" ;
chromosome2 GeneDB CDS 1140250 1140297 . + . mRNA SPBC409.05 ; colour "2" ;
chromosome2 GeneDB CDS 1140372 1140739 . + . mRNA SPBC409.05 ; colour "2" ;
chromosome2 GeneDB CDS 1140785 1140805 . + . mRNA SPBC409.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 1140197 1140202 . + . misc_feature unknown_855 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1140232 1140249 . + . misc_feature unknown_856 ; colour "6" ; note "ttgacaaactgtttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1140298 1140303 . + . misc_feature unknown_857 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1140351 1140371 . + . misc_feature unknown_858 ; colour "6" ; note "ctaaaatctcaatttcaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1140740 1140745 . + . misc_feature unknown_859 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1140771 1140784 . + . misc_feature unknown_860 ; colour "6" ; note "ctaaccgcttgcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1140806 1141206 . + . mRNA SPBC409.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.05" ; systematic_id "SPBC409.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1142199 1142219 . + . mRNA SPBC409.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.06" ; systematic_id "SPBC409.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1142220 1143273 . + . mRNA SPBC409.06 ; systematic_id "SPBC409.06" ; colour "2" ; gene "SPBC409.06 ||| uch2" ; Alias "uch2" ; db_xref "SPD:16/16B04" ; GO "GO:0005634; nucleus
GO:0034399; nucleur periphery
GO:0000502; protease complex
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0071947; protein deubiquitination involved in proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human UCHL5 ortholog; date=20101001" ; primary_name "uch2" ; product "ubiquitin C-terminal hydrolase Uch2" ;
chromosome2 GeneDB CDS 1142220 1142344 . + . mRNA SPBC409.06 ; colour "2" ;
chromosome2 GeneDB CDS 1142496 1143273 . + . mRNA SPBC409.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 1142345 1142350 . + . misc_feature unknown_861 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1142477 1142495 . + . misc_feature unknown_862 ; colour "6" ; note "ctgatttccttgcaattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1143274 1143410 . + . mRNA SPBC409.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.06" ; systematic_id "SPBC409.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1143731 1143966 . - . mRNA SPBC409.07c ; ID "SPBC409.07c" ; systematic_id "SPBC409.07c" ; note "mRNA from AU008776" ;
chromosome2 GeneDB CDS_parts 1143967 1145784 . - . mRNA SPBC409.07c ; systematic_id "SPBC409.07c" ; colour "2" ; db_xref "SPD:33/33D12" ; Alias "wis1" ; synonym "spc2 ||| smf2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:1756736; date=20100705 ||| term=phenotype, cell morphology, small cells; qualifier=mutant_allele; allele=wis1-DD; db_xref=PMID:1756736; date=20100705 ||| term=orthologous to S. cerevisiae YJL128C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Sty1; date=20100826 ||| term=tartget of Win1; qualifier=phosphorylated_by; date=20101121" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004708; MAP kinase kinase activity
GO:0005515; protein binding
GO:0006468; protein amino acid phosphorylation
GO:0007346; regulation of progression through mitotic cell cycle
GO:0043555; regulation of translation in response to stress
GO:0046685; cellular response to arsenic
GO:0070301; cellular response to hydrogen peroxide
GO:0006970; response to osmotic stress
GO:0051403; stress-activated MAPK cascade
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0070314; G1 to G0 transition" ; primary_name "wis1" ; product "MAP kinase kinase Wis1" ;
chromosome2 GeneDB CDS 1143967 1145784 . - . mRNA SPBC409.07c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1145783 1146543 . - . mRNA SPBC409.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.07c" ; systematic_id "SPBC409.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1145785 1152078 . + . misc_feature unknown_863 ; note "low-complexity gene-free region" ;
chromosome2 GeneDB misc_feature 1147417 1148305 . + . misc_feature unknown_864 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1335" ;
chromosome2 GeneDB misc_feature 1149719 1150852 . + . misc_feature unknown_865 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1337-40" ;
chromosome2 GeneDB 5'-UTR 1151272 1152078 . + . mRNA SPBC409.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.08" ; systematic_id "SPBC409.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1152079 1153740 . + . mRNA SPBC409.08 ; systematic_id "SPBC409.08" ; colour "7" ; gene "SPBC409.08" ; note "was originally annotated as a pseudogene, but now has putative predicted splice with no branch site ||| splice may be incorrect, intron is unsupported, and this could be a single frameshift" ; db_xref "SPD:34/34G11" ; GO "GO:0006810; transport
GO:0022857; carrier activity
GO:0005886; plasma membrane
GO:0015846; polyamine transport
GO:0000297; spermine transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR138C and YPR156C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; product "spermine family transporter (predicted)" ;
chromosome2 GeneDB CDS 1152079 1152173 . + . mRNA SPBC409.08 ; colour "7" ;
chromosome2 GeneDB CDS 1152216 1153740 . + . mRNA SPBC409.08 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1153741 1154300 . + . mRNA SPBC409.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.08" ; systematic_id "SPBC409.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1154612 1155601 . - . mRNA SPBC409.09c ; systematic_id "SPBC409.09c" ; colour "2" ; gene "mis13 ||| SPBC409.09c ||| cnl1" ; Alias "mis13" ; db_xref "SPD:14/14D06" ; synonym "cnl1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; GO "GO:0000939; inner kinetochore of condensed chromosome
GO:0000070; mitotic sister chromatid segregation
GO:0005634; nucleus
GO:0005515; protein binding
GO:0031617; NMS complex
GO:0000818; MIND complex
GO:0000779; condensed chromosome, pericentric region
GO:0019236; response to pheromone
GO:0034501; protein localization to kinetochore" ; primary_name "mis13" ; product "kinetochore protein Mis13" ;
chromosome2 GeneDB CDS 1154612 1155601 . - . mRNA SPBC409.09c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1155600 1155620 . - . mRNA SPBC409.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.09c" ; systematic_id "SPBC409.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1157104 1157117 . + . mRNA SPBC409.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.10" ; systematic_id "SPBC409.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1157118 1158017 . + . mRNA SPBC409.10 ; systematic_id "SPBC409.10" ; colour "2" ; gene "ade7 ||| SPBC409.10" ; Alias "ade7" ; db_xref "SPD:12/12D01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAR015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0006189; 'de novo' IMP biosynthesis
GO:0004639; phosphoribosylaminoimidazolesuccinocarbo xamidesynthase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0046084; adenine biosynthesis" ; primary_name "ade7" ; product "phosphoribosylamidoimidazolesuccinocarboxamide synthase, SAICAR synthetase, Ade7" ; EC_number "6.3.2.6" ;
chromosome2 GeneDB CDS 1157118 1158017 . + . mRNA SPBC409.10 ; colour "2" ;
chromosome2 GeneDB misc_RNA 1157158 1158382 . - . misc_RNA SPNCRNA.568 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.568" ; synonym "SPNG2AF41" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB 3'-UTR 1158018 1158424 . + . mRNA SPBC409.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.10" ; systematic_id "SPBC409.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1158533 1158593 . + . mRNA SPBC409.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.11" ; systematic_id "SPBC409.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1158594 1160255 . + . mRNA SPBC409.11 ; Alias "meu18" ; db_xref "SPD:34/34G12" ; systematic_id "SPBC409.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; qualifier=predicted; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; colour "8" ; primary_name "meu18" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1158594 1160255 . + . mRNA SPBC409.11 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1160256 1160295 . + . mRNA SPBC409.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.11" ; systematic_id "SPBC409.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 1160893 1160994 . - . tRNA SPBTRNAARG.05 ; systematic_id "SPBTRNAARG.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033421; CCT codon-amino acid adaptor activity" ; gene "SPBTRNAARG.05" ; product "tRNA Arginine" ; note "tRNA Arg anticodon CCT, Cove score 57.05" ;
chromosome2 GeneDB intron 1160929 1160958 . - . intron unknown_866 ; note "intron tRNA Arg anticodon CCT" ;
chromosome2 GeneDB 3'-UTR 1161890 1161895 . - . mRNA SPBC409.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.12c" ; systematic_id "SPBC409.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1161896 1163082 . - . mRNA SPBC409.12c ; systematic_id "SPBC409.12c" ; colour "2" ; gene "SPBC409.12c ||| stn1" ; Alias "stn1" ; db_xref "SPD:08/08A05" ; GO "GO:0000781; chromosome, telomeric region
GO:0070188; Stn1-Ten1 complex
GO:0005515; protein binding
GO:0043047; single-stranded telomeric DNA binding
GO:0016233; telomere capping" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:17715303; date=20100727 ||| term=phenotype, cell morphology, misshapen cells; db_xref=PMID:17715303; date=20100727 ||| term=OB fold; date=20070706 ||| term=orthologous to S. cerevisiae YDR082W; date=20070706 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "stn1" ; product "telomere cap complex subunit Stn1" ;
chromosome2 GeneDB CDS 1161896 1162665 . - . mRNA SPBC409.12c ; colour "2" ;
chromosome2 GeneDB CDS 1162820 1162918 . - . mRNA SPBC409.12c ; colour "2" ;
chromosome2 GeneDB CDS 1162974 1163082 . - . mRNA SPBC409.12c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1163081 1163209 . - . mRNA SPBC409.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.12c" ; systematic_id "SPBC409.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1164170 1164317 . + . mRNA SPBC409.23 ; db_xref "PMID:21270388" ; systematic_id "SPBC409.23" ;
chromosome2 GeneDB CDS_parts 1164318 1164885 . + . mRNA SPBC409.23 ; Alias "tam7" ; systematic_id "SPBC409.23" ; colour "10" ; controlled_curation "term=orthologous to S. cerevisiae YLR099W-A; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; primary_name "tam7" ; gene "SPBC409.23" ; product "conserved fungal protein" ; note "S. cerevisiae deletion is inviable, is likely to be more broadly conserved" ;
chromosome2 GeneDB CDS 1164318 1164492 . + . mRNA SPBC409.23 ; colour "10" ;
chromosome2 GeneDB CDS 1164842 1164885 . + . mRNA SPBC409.23 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 1164886 1165049 . + . mRNA SPBC409.23 ; db_xref "PMID:21270388" ; systematic_id "SPBC409.23" ;
chromosome2 GeneDB 5'-UTR 1165405 1165480 . + . mRNA SPBC409.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.13" ; systematic_id "SPBC409.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1165481 1166247 . + . mRNA SPBC409.13 ; db_xref "SPD:09/09E04" ; systematic_id "SPBC409.13" ; colour "7" ; GO "GO:0000906; 6,7-dimethyl-8-ribityllumazine synthase activity
GO:0009231; riboflavin biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL143C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC409.13" ; product "6,7-dimethyl-8-ribityllumazine synthase (predicted)" ;
chromosome2 GeneDB CDS 1165481 1165522 . + . mRNA SPBC409.13 ; colour "7" ;
chromosome2 GeneDB CDS 1165810 1166247 . + . mRNA SPBC409.13 ; colour "7" ;
chromosome2 GeneDB misc_feature 1165523 1165528 . + . misc_feature unknown_867 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1165790 1165809 . + . misc_feature unknown_868 ; colour "6" ; note "ctaatcaattttttttatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1166248 1166507 . + . mRNA SPBC409.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.13" ; systematic_id "SPBC409.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1166561 1166931 . - . mRNA SPBC409.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.14c" ; systematic_id "SPBC409.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1166932 1167204 . - . mRNA SPBC409.14c ; systematic_id "SPBC409.14c" ; colour "7" ; gene "SPBC409.14c ||| mrps17" ; Alias "mrps17" ; db_xref "SPD:01/01C03" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrps17" ; product "mitochondrial ribosomal protein subunit S17 (predicted)" ;
chromosome2 GeneDB CDS 1166932 1167204 . - . mRNA SPBC409.14c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1167203 1167275 . - . mRNA SPBC409.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.14c" ; systematic_id "SPBC409.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1167534 1168334 . + . mRNA SPBC409.15 ; systematic_id "SPBC409.15" ; colour "7" ; gene "SPBC409.15" ; note "highly acidic C terminus" ; db_xref "SPD:10/10B05" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR435W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "rRNA processing protein Tsr2 (predicted)" ;
chromosome2 GeneDB CDS 1167534 1167800 . + . mRNA SPBC409.15 ; colour "7" ;
chromosome2 GeneDB CDS 1168062 1168334 . + . mRNA SPBC409.15 ; colour "7" ;
chromosome2 GeneDB misc_feature 1167801 1167806 . + . misc_feature unknown_869 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1168046 1168061 . + . misc_feature unknown_870 ; colour "6" ; note "ttaacagtctatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1168335 1168434 . + . mRNA SPBC409.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.15" ; systematic_id "SPBC409.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1168687 1169049 . - . mRNA SPBC409.16c ; db_xref "SPD:02/02E02" ; systematic_id "SPBC409.16c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0006310; DNA recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL027W; date=20080905 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, previously annotated as dubious; cv=warning; date=20100304" ; gene "SPBC409.16c" ; product "recombination protein Saw1 (predicted)" ;
chromosome2 GeneDB CDS 1168687 1169049 . - . mRNA SPBC409.16c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1169312 1169553 . - . mRNA SPBC409.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.17c" ; systematic_id "SPBC409.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1169554 1170222 . - . mRNA SPBC409.17c ; db_xref "SPD:07/07F10" ; systematic_id "SPBC409.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC409.17c" ; product "DUF1769 family protein" ;
chromosome2 GeneDB CDS 1169554 1170222 . - . mRNA SPBC409.17c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 1170221 1170469 . - . mRNA SPBC409.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.17c" ; systematic_id "SPBC409.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1171565 1171601 . + . mRNA SPBC409.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.18" ; systematic_id "SPBC409.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1171602 1172501 . + . mRNA SPBC409.18 ; db_xref "SPD:12/12D02" ; systematic_id "SPBC409.18" ; colour "7" ; GO "GO:0000329; vacuolar membrane (sensu Fungi)
GO:0000810; diacylglycerol pyrophosphate phosphatase activity
GO:0006644; phospholipid metabolism
GO:0019932; second-messenger-mediated signaling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR284C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC409.18" ; product "phosphatidic acid phosphatase (predicted)" ;
chromosome2 GeneDB CDS 1171602 1171796 . + . mRNA SPBC409.18 ; colour "7" ;
chromosome2 GeneDB CDS 1171857 1172501 . + . mRNA SPBC409.18 ; colour "7" ;
chromosome2 GeneDB misc_feature 1171797 1171802 . + . misc_feature unknown_871 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1171845 1171856 . + . misc_feature unknown_872 ; colour "6" ; note "ctaaccctctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1172502 1172644 . + . mRNA SPBC409.18 ; ID "SPBC409.18" ; systematic_id "SPBC409.18" ; note "mRNA from AU010947" ;
chromosome2 GeneDB CDS_parts 1172732 1174084 . - . mRNA SPBC409.19c ; systematic_id "SPBC409.19c" ; colour "7" ; gene "SPBC409.19c" ; note "metaxin 1 may be the ortholog of S. cerevisiae TOM37. I have multiply aligned it and it has conserved common residues; TOM37 has a C term TMM region like many metaxin 1 family; both are mitochondrial membrane proteins involved in pre-protein import; S. cerevisiae ortholog for metaxin hasn't been identified and vice versa; can't make a Pfam family because it overlaps with glutathionine S- transferase" ; db_xref "SPD:21/21A03" ; GO "GO:0007008; outer mitochondrial membrane organization and biogenesis
GO:0001401; mitochondrial sorting and assembly machinery complex
GO:0008565; protein transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "metaxin (predicted)" ;
chromosome2 GeneDB CDS 1172732 1174084 . - . mRNA SPBC409.19c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1174083 1174210 . - . mRNA SPBC409.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.19c" ; systematic_id "SPBC409.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1174535 1174828 . - . mRNA SPBC409.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.20c" ; systematic_id "SPBC409.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1174829 1175865 . - . mRNA SPBC409.20c ; systematic_id "SPBC409.20c" ; colour "2" ; gene "psh3 ||| SPBC409.20c" ; Alias "psh3" ; db_xref "SPD:15/15G01" ; GO "GO:0005783; endoplasmic reticulum
GO:0051082; unfolded protein binding
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDL212W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "psh3" ; product "ER chaperone SHR3 homologue Psh3" ;
chromosome2 GeneDB CDS 1174829 1175365 . - . mRNA SPBC409.20c ; colour "2" ;
chromosome2 GeneDB CDS 1175755 1175865 . - . mRNA SPBC409.20c ; colour "2" ;
chromosome2 GeneDB misc_feature 1175366 1175379 . - . misc_feature unknown_873 ; colour "6" ; note "ctaatgtcatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1175749 1175754 . - . misc_feature unknown_874 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1175866 1175884 . - . mRNA SPBC409.20c ; Alias "psh3" ; ID "SPBC409.20c" ; db_xref "PMID:18488015" ; systematic_id "SPBC409.20c" ; primary_name "psh3" ;
chromosome2 GeneDB 5'-UTR 1176793 1176860 . + . mRNA SPBC409.21 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.21" ; systematic_id "SPBC409.21" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1176861 1177439 . + . mRNA SPBC409.21 ; systematic_id "SPBC409.21" ; colour "7" ; gene "sec66 ||| SPBC409.21" ; Alias "sec66" ; db_xref "SPD:06/06C06" ; GO "GO:0006620; posttranslational protein targeting to membrane
GO:0005789; endoplasmic reticulum membrane
GO:0031207; Sec62/Sec63 complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR171W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "sec66" ; product "ER protein translocation subcomplex subunit Sec66 (predicted)" ;
chromosome2 GeneDB CDS 1176861 1177439 . + . mRNA SPBC409.21 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1177440 1177840 . + . mRNA SPBC409.21 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC409.21" ; systematic_id "SPBC409.21" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1178002 1178079 . - . mRNA SPBC1306.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1306.01c" ; systematic_id "SPBC1306.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1178080 1180392 . - . mRNA SPBC1306.01c ; systematic_id "SPBC1306.01c" ; colour "7" ; gene "SPBC409.22c ||| SPBC1306.01c" ; Alias "SPBC409.22c" ; db_xref "SPD:38/38C03" ; synonym "SPBC409.22c" ; GO "GO:0005739; mitochondrion
GO:0005525; GTP binding
GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC409.22c" ; product "mitochondrial translation elongation factor G (predicted)" ;
chromosome2 GeneDB CDS 1178080 1180392 . - . mRNA SPBC1306.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 1179638 1179756 . + . misc_feature unknown_875 ; note "nominal overlap with cosmid SPBC1306 and cosmid SPBC409" ;
chromosome2 GeneDB intron 1180373 1180580 . - . intron SPBC1306.01c ; systematic_id "SPBC1306.01c" ;
chromosome2 GeneDB 5'-UTR 1180391 1180478 . - . mRNA SPBC1306.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1306.01c" ; systematic_id "SPBC1306.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1180919 1181043 . + . mRNA SPBC1306.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1306.02" ; systematic_id "SPBC1306.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1181044 1184104 . + . mRNA SPBC1306.02 ; db_xref "SPD:47/47G11" ; systematic_id "SPBC1306.02" ; synonym "SPBC4.08" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL183C; date=19700101 ||| term=WD repeat protein; date=20080125 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=human WDR6 ortholog; date=20100301" ; gene "SPBC1306.02 ||| SPBC4.08" ; product "WD repeat protein, human WDR6 family, implicated in cell cycle" ;
chromosome2 GeneDB CDS 1181044 1182089 . + . mRNA SPBC1306.02 ; colour "10" ;
chromosome2 GeneDB CDS 1182143 1182791 . + . mRNA SPBC1306.02 ; colour "10" ;
chromosome2 GeneDB CDS 1182845 1184104 . + . mRNA SPBC1306.02 ; colour "10" ;
chromosome2 GeneDB misc_feature 1182090 1182095 . + . misc_feature unknown_876 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1182125 1182142 . + . misc_feature unknown_877 ; colour "6" ; note "ctaacccaattaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_RNA 1182610 1184243 . - . misc_RNA SPNCRNA.569 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.569" ; synonym "SPNG2AF31" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB misc_feature 1182792 1182797 . + . misc_feature unknown_878 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1182831 1182844 . + . misc_feature unknown_879 ; colour "6" ; note "ctaacatatgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1184032 1184132 . + . misc_feature unknown_880 ; note "nominal overlap with cosmid SPBC4 and cosmid SPBC1306" ;
chromosome2 GeneDB 3'-UTR 1184105 1184218 . + . mRNA SPBC1306.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1306.02" ; systematic_id "SPBC1306.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1184427 1185324 . + . mRNA SPBC4.01 ; Alias "dni2" ; db_xref "SPD:12/12C07" ; systematic_id "SPBC4.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Delayed minus- Nitrogen Induction; cv=name_description; db_xref=PMID:19627505; date=20090817 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:*******; date=20090817 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=orthologous to S. cerevisiae YBR040W; date=19700101" ; colour "7" ; primary_name "dni2" ; product "tetraspan protein Dni2 (predicted)" ;
chromosome2 GeneDB CDS 1184427 1185115 . + . mRNA SPBC4.01 ; colour "7" ;
chromosome2 GeneDB CDS 1185267 1185324 . + . mRNA SPBC4.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 1185116 1185121 . + . misc_feature unknown_881 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1185251 1185266 . + . misc_feature unknown_882 ; colour "6" ; note "ttaacacataaaacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1185476 1185616 . - . mRNA SPBC4.02c ; ID "SPBC4.02c" ; systematic_id "SPBC4.02c" ; note "mRNA from SPAB1290" ;
chromosome2 GeneDB CDS_parts 1185617 1187324 . - . mRNA SPBC4.02c ; db_xref "SPD:35/35E05" ; systematic_id "SPBC4.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR265C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC4.02c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1185617 1186640 . - . mRNA SPBC4.02c ; colour "10" ;
chromosome2 GeneDB CDS 1186738 1186846 . - . mRNA SPBC4.02c ; colour "10" ;
chromosome2 GeneDB CDS 1187087 1187162 . - . mRNA SPBC4.02c ; colour "10" ;
chromosome2 GeneDB CDS 1187220 1187324 . - . mRNA SPBC4.02c ; colour "10" ;
chromosome2 GeneDB misc_feature 1186641 1186653 . - . misc_feature unknown_883 ; colour "6" ; note "ttaatgtgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1186732 1186737 . - . misc_feature unknown_884 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1186847 1186865 . - . misc_feature unknown_885 ; colour "6" ; note "ctaaccttttttttttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1187081 1187086 . - . misc_feature unknown_886 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1187323 1187410 . - . mRNA SPBC4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4.02c" ; systematic_id "SPBC4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1187626 1188136 . - . mRNA SPBC4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4.03c" ; systematic_id "SPBC4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1188137 1190812 . - . mRNA SPBC4.03c ; db_xref "SPD:38/38H07" ; systematic_id "SPBC4.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR098C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0030127; COPII vesicle coat
GO:0005783; endoplasmic reticulum
GO:0008270; zinc ion binding
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; gene "SPBC4.03c" ; product "COPII-coated vesicle component Sfb3 (predicted)" ;
chromosome2 GeneDB CDS 1188137 1190812 . - . mRNA SPBC4.03c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1191315 1191396 . - . mRNA SPBC4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4.04c" ; systematic_id "SPBC4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1191397 1194108 . - . mRNA SPBC4.04c ; systematic_id "SPBC4.04c" ; colour "2" ; gene "mcm2 ||| cdc19 ||| nda1 ||| SPBC4.04c" ; Alias "mcm2" ; db_xref "SPD:33/33H09" ; synonym "cdc19 ||| nda1" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0042555; MCM complex
GO:0005737; cytoplasm
GO:0031390; nuclear replication fork
GO:0005634; nucleus
GO:0005656; pre-replicative complex
GO:0004003; ATP-dependent DNA helicase activity
GO:0006270; DNA replication initiation
GO:0006271; DNA strand elongation during DNA replication
GO:0007090; regulation of S phase of mitotic cell cycle
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:7876346; date=20100907 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YBL023C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705" ; primary_name "mcm2" ; product "MCM complex subunit Mcm2" ;
chromosome2 GeneDB CDS 1191397 1193656 . - . mRNA SPBC4.04c ; colour "2" ;
chromosome2 GeneDB CDS 1193876 1194108 . - . mRNA SPBC4.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 1193657 1193668 . - . misc_feature unknown_887 ; colour "6" ; note "ctaactgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1193870 1193875 . - . misc_feature unknown_888 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1194107 1194118 . - . mRNA SPBC4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4.04c" ; systematic_id "SPBC4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1194337 1194353 . + . mRNA SPBC4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4.05" ; systematic_id "SPBC4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1194354 1195343 . + . mRNA SPBC4.05 ; systematic_id "SPBC4.05" ; colour "2" ; gene "mlo2 ||| SPBC4.05" ; Alias "mlo2" ; db_xref "SPD:32/32C04" ; GO "GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-UBR1 type; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c14orf130 ortholog; date=20100723 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, Missegregation and Lethal when Overexpressed; db_xref=PMID:8972853; date=20100723" ; primary_name "mlo2" ; product "zinc finger protein Mlo2" ;
chromosome2 GeneDB CDS 1194354 1195343 . + . mRNA SPBC4.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1195344 1195711 . + . mRNA SPBC4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4.05" ; systematic_id "SPBC4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1195990 1196013 . + . mRNA SPBC4.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4.06" ; systematic_id "SPBC4.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1196014 1197402 . + . mRNA SPBC4.06 ; db_xref "SPD:21/21E02" ; systematic_id "SPBC4.06" ; colour "10" ; GO "GO:0003993; acid phosphatase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC4.06" ; product "acid phosphatase (predicted)" ;
chromosome2 GeneDB CDS 1196014 1197402 . + . mRNA SPBC4.06 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 1197403 1197691 . + . mRNA SPBC4.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4.06" ; systematic_id "SPBC4.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1197802 1197897 . - . mRNA SPBC4.07c ; Alias "rpt2" ; ID "SPBC4.07c" ; db_xref "EMBL:Z29366" ; systematic_id "SPBC4.07c" ; primary_name "rpt2" ;
chromosome2 GeneDB CDS_parts 1197898 1199379 . - . mRNA SPBC4.07c ; systematic_id "SPBC4.07c" ; colour "2" ; gene "rpt2 ||| mts2 ||| SPBC4.07c" ; Alias "rpt2" ; db_xref "SPD:40/40E11" ; synonym "mts2" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0005515; protein binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDL007W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpt2" ; product "19S proteasome regulatory subunit Rpt2" ;
chromosome2 GeneDB CDS 1197898 1199241 . - . mRNA SPBC4.07c ; colour "2" ;
chromosome2 GeneDB CDS 1199377 1199379 . - . mRNA SPBC4.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 1199242 1199256 . - . misc_feature unknown_889 ; colour "6" ; note "ctaactctcctatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1199242 1199376 . - . intron SPBC4.07c ; Alias "rpt2" ; db_xref "EMBL:Z29366" ; systematic_id "SPBC4.07c" ; primary_name "rpt2" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1199371 1199376 . - . misc_feature unknown_890 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1199380 1199411 . - . mRNA SPBC4.07c ; ID "SPBC4.07c" ; db_xref "EMBL:Z29366" ; systematic_id "SPBC4.07c" ;
chromosome2 GeneDB rRNA 1199882 1200066 . + . rRNA SPRRNA.27 ; systematic_id "SPRRNA.27" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "5S rRNA" ;
chromosome2 GeneDB misc_feature 1199967 1200067 . + . misc_feature unknown_891 ; note "nominal overlap with cosmid SPBC4, EM:AL121863 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 1199967 1200068 . + . misc_feature unknown_892 ; note "nominal overlap with cosmid SPBC725, EM:AL034352 S. pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 1200555 1200660 . + . mRNA SPBC725.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.01" ; systematic_id "SPBC725.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1200661 1201974 . + . mRNA SPBC725.01 ; db_xref "SPD:22/22H05" ; systematic_id "SPBC725.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL106W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0004069; aspartate transaminase activity
GO:0019266; asparagine biosynthesis from oxaloacetate
GO:0006532; aspartate biosynthesis
GO:0006533; aspartate catabolism
GO:0005759; mitochondrial matrix" ; gene "SPBC725.01" ; product "aspartate aminotransferase (predicted)" ; EC_number "2.6.1.1" ;
chromosome2 GeneDB CDS 1200661 1201974 . + . mRNA SPBC725.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1201975 1202314 . + . mRNA SPBC725.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.01" ; systematic_id "SPBC725.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1203084 1203756 . + . mRNA SPBC725.02 ; ID "SPBC725.02" ; systematic_id "SPBC725.02" ; note "mRNA from spc01857" ;
chromosome2 GeneDB CDS_parts 1203757 1204644 . + . mRNA SPBC725.02 ; systematic_id "SPBC725.02" ; colour "2" ; gene "mpr1 ||| spy1 ||| SPBC725.02" ; Alias "mpr1" ; db_xref "SPD:32/32A07" ; synonym "spy1" ; GO "GO:0005515; protein binding
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0034599; cellular response to oxidative stress
GO:0023034; intracellular signaling cascade" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL235C; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=name description, S. Pombe YPD1- like protein; cv=name_description; date=20091204 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:10940030; date=20101126" ; primary_name "mpr1" ; product "histidine-containing response regulator phosphotransferase Mpr1" ;
chromosome2 GeneDB CDS 1203757 1204644 . + . mRNA SPBC725.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1204645 1206710 . + . mRNA SPBC725.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.02" ; systematic_id "SPBC725.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1207040 1207813 . + . mRNA SPBC725.03 ; db_xref "SPD:09/09F01" ; systematic_id "SPBC725.03" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR017W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC725.03" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1207040 1207813 . + . mRNA SPBC725.03 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 1207814 1208140 . + . mRNA SPBC725.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.03" ; systematic_id "SPBC725.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1208694 1208964 . + . mRNA SPBC725.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.04" ; systematic_id "SPBC725.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1208965 1210722 . + . mRNA SPBC725.04 ; db_xref "SPD:36/36B05" ; systematic_id "SPBC725.04" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human HACL1 ortholog; date=20100727" ; gene "SPBC725.04" ; product "oxalyl-CoA decarboxylase (predicted)" ;
chromosome2 GeneDB CDS 1208965 1210626 . + . mRNA SPBC725.04 ; colour "10" ;
chromosome2 GeneDB CDS 1210678 1210722 . + . mRNA SPBC725.04 ; colour "10" ;
chromosome2 GeneDB intron 1210627 1210677 . + . intron SPBC725.04 ; systematic_id "SPBC725.04" ; note "confirmed intron" ;
chromosome2 GeneDB 3'-UTR 1210723 1210856 . + . mRNA SPBC725.04 ; ID "SPBC725.04" ; systematic_id "SPBC725.04" ; note "mRNA from AU012818" ;
chromosome2 GeneDB CDS_parts 1210895 1212352 . - . mRNA SPBC725.05c ; db_xref "SPD:23/23E07" ; systematic_id "SPBC725.05c" ; colour "7" ; GO "GO:0047429; nucleoside-triphosphate diphosphatase activity
GO:0004551; nucleotide diphosphatase activity
GO:0009141; nucleoside triphosphate metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL016C and YCR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC725.05c" ; product "nucleotide pyrophosphatase (predicted)" ;
chromosome2 GeneDB CDS 1210895 1212352 . - . mRNA SPBC725.05c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1212351 1212375 . - . mRNA SPBC725.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.05c" ; systematic_id "SPBC725.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1212823 1215921 . - . mRNA SPBC725.06c ; systematic_id "SPBC725.06c" ; colour "2" ; gene "ppk31 ||| SPBC725.06c ||| mug25" ; Alias "ppk31" ; db_xref "SPD:30/30A06" ; synonym "mug25" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YFL033C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk31" ; product "serine/threonine protein kinase Ppk31 (predicted)" ;
chromosome2 GeneDB CDS 1212823 1215921 . - . mRNA SPBC725.06c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1216725 1217018 . + . mRNA SPBC725.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.07" ; systematic_id "SPBC725.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1217019 1218815 . + . mRNA SPBC725.07 ; systematic_id "SPBC725.07" ; colour "2" ; gene "pex5 ||| SPBC725.07" ; Alias "pex5" ; db_xref "SPD:36/36D08" ; GO "GO:0005829; cytosol
GO:0005777; peroxisome
GO:0000268; peroxisome targeting sequence binding
GO:0007031; peroxisome organization and biogenesis
GO:0006625; protein targeting to peroxisome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Zellweger syndrome; date=20060920 ||| term=disease associated, peroxisomal defects; date=20080601 ||| term=orthologous to S. cerevisiae YDR244W and YMR018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pex5" ; product "peroxisomal targeting signal receptor Pex5" ;
chromosome2 GeneDB CDS 1217019 1218815 . + . mRNA SPBC725.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1218816 1219086 . + . mRNA SPBC725.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.07" ; systematic_id "SPBC725.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1219416 1219508 . + . mRNA SPBC725.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.08" ; systematic_id "SPBC725.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1219509 1221515 . + . mRNA SPBC725.08 ; db_xref "SPD:27/27D09" ; systematic_id "SPBC725.08" ; colour "7" ; GO "GO:0031048; small RNA-mediated chromatin silencing" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC725.08" ; product "zf-C2H2 type zinc finger protein, implicated in RNAi (predicted)" ;
chromosome2 GeneDB CDS 1219509 1219572 . + . mRNA SPBC725.08 ; colour "7" ;
chromosome2 GeneDB CDS 1219625 1219732 . + . mRNA SPBC725.08 ; colour "7" ;
chromosome2 GeneDB CDS 1219787 1219817 . + . mRNA SPBC725.08 ; colour "7" ;
chromosome2 GeneDB CDS 1219889 1221515 . + . mRNA SPBC725.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 1219573 1219578 . + . misc_feature unknown_893 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1219593 1219624 . + . misc_feature unknown_894 ; colour "6" ; note "ttgatagaaatactcatcctttttttgcatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1219733 1219738 . + . misc_feature unknown_895 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1219768 1219786 . + . misc_feature unknown_896 ; colour "6" ; note "ttaactacaatacgtctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1219818 1219823 . + . misc_feature unknown_897 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1219873 1219888 . + . misc_feature unknown_898 ; colour "6" ; note "ctaacaaggagactag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1221838 1222359 . - . mRNA SPBC725.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.09c" ; systematic_id "SPBC725.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1222360 1223196 . - . mRNA SPBC725.09c ; systematic_id "SPBC725.09c" ; colour "2" ; gene "hob3 ||| SPBC725.09c" ; Alias "hob3" ; db_xref "SPD:10/10H09" ; GO "GO:0030479; actin cortical patch
GO:0051285; cell cortex of cell tip
GO:0031097; medial ring
GO:0005096; GTPase activator activity
GO:0008092; cytoskeletal protein binding
GO:0005515; protein binding
GO:0010687; actin filament organization
GO:0000915; cytokinesis, contractile ring formation
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BAR domain; cv=protein_family; date=20060913 ||| term=orthologous to S. cerevisiae YCR009C; date=19700101 ||| term=localization dependent on F- actin; db_xref=PMID:17363901; date=20070718 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Homolog Of Bin; date=20090707 ||| term=human BIN3 ortholog; db_xref=PMID:11274158; date=20101012 ||| term=complementation, functionally complemented by human BIN3; db_xref=PMID:11274158; date=20101012" ; primary_name "hob3" ; product "BAR adaptor protein Hob3" ;
chromosome2 GeneDB CDS 1222360 1223106 . - . mRNA SPBC725.09c ; colour "2" ;
chromosome2 GeneDB CDS 1223149 1223196 . - . mRNA SPBC725.09c ; colour "2" ;
chromosome2 GeneDB misc_feature 1223107 1223121 . - . misc_feature unknown_899 ; colour "6" ; note "ctaacattgtggtag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1223107 1223148 . - . intron SPBC725.09c ; systematic_id "SPBC725.09c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1223143 1223148 . - . misc_feature unknown_900 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1223195 1223212 . - . mRNA SPBC725.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.09c" ; systematic_id "SPBC725.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1224483 1224560 . + . misc_RNA SPNCRNA.342 ; db_xref "PMID:18488015" ; synonym "SPNG1359" ; systematic_id "SPNCRNA.342" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 1224587 1224973 . + . mRNA SPBC725.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.10" ; systematic_id "SPBC725.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1224974 1225462 . + . mRNA SPBC725.10 ; db_xref "SPD:04/04F04" ; systematic_id "SPBC725.10" ; colour "7" ; GO "GO:0015886; haem transport
GO:0006839; mitochondrial transport
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC725.10" ; product "tspO homolog/ peripheral benzodiazepine receptor homolog, involved in the transport cytoplas/mitochondrial of haem (predicted)" ;
chromosome2 GeneDB CDS 1224974 1225462 . + . mRNA SPBC725.10 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1224974 1225909 . - . mRNA SPBC725.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.11c" ; systematic_id "SPBC725.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1225463 1225689 . + . mRNA SPBC725.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.10" ; systematic_id "SPBC725.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1225910 1226914 . - . mRNA SPBC725.11c ; systematic_id "SPBC725.11c" ; colour "2" ; gene "php2 ||| SPBC725.11c" ; Alias "php2" ; db_xref "SPD:32/32C08" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006109; regulation of carbohydrate metabolism
GO:0016602; CCAAT-binding factor complex
GO:0005634; nucleus
GO:0033217; regulation of transcription from RNA polymerase II promoter in response to iron ion starvation
GO:0043565; sequence-specific DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL237C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=DNA binding specificity, complex binds 5'-CCAAT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates pcl1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates sdh41; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates isa1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates fbp1; db_xref=PMID:11238405; date=20100302" ; primary_name "php2" ; product "CCAAT-binding factor complex subunit Php2" ;
chromosome2 GeneDB CDS 1225910 1226914 . - . mRNA SPBC725.11c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1226913 1227008 . - . mRNA SPBC725.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.11c" ; systematic_id "SPBC725.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1227762 1228307 . + . mRNA SPBC725.12 ; literature "PMID:19570910" ; systematic_id "SPBC725.12" ; colour "2" ; gene "SPBC725.12 ||| mug118" ; Alias "nbl1" ; db_xref "SPD:01/01H12" ; synonym "mug118" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0032133; chromosome passenger complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005819; spindle
GO:0051233; spindle midzone
GO:0005730; nucleolus" ; controlled_curation "term=orthologous to S. cerevisiae YHR199C-A; date=20080116 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20090130 ||| term=species distribution, conserved in Metazoa; date=20090130 ||| term=species distribution, conserved in Vertebrates; date=20090130 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:19570910; date=20090707 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:19570910; date=20090707 ||| term=phenotype, cut; qualifier=deletion; cv=phenotype; db_xref=PMID:19570910; date=20090707 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=in_vitro; db_xref=PMID:19570910; date=20090707" ; primary_name "nbl1" ; product "Borealin homolog Nbl1" ;
chromosome2 GeneDB CDS 1227762 1227876 . + . mRNA SPBC725.12 ; colour "2" ;
chromosome2 GeneDB CDS 1227926 1228094 . + . mRNA SPBC725.12 ; colour "2" ;
chromosome2 GeneDB CDS 1228166 1228307 . + . mRNA SPBC725.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 1227877 1227882 . + . misc_feature unknown_901 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1227908 1227925 . + . misc_feature unknown_902 ; colour "6" ; note "ttaacgggtatttttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1228273 1228475 . - . mRNA SPBC725.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.13c" ; systematic_id "SPBC725.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1228476 1229027 . - . mRNA SPBC725.13c ; systematic_id "SPBC725.13c" ; colour "2" ; db_xref "SPD:05/05F08" ; Alias "psf2" ; synonym "dre13 ||| bsh3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16199877; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:15466421; date=20100730 ||| term=orthologous to S. cerevisiae YJL072C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Defect in REreplication; cv=name_description; db_xref=PMID:15466421; date=20091111" ; GO "GO:0000811; GINS complex
GO:0005634; nucleus
GO:0005634; nucleus
GO:0006270; DNA replication initiation
GO:0006261; DNA-dependent DNA replication
GO:0034613; cellular protein localization
GO:0045132; meiotic chromosome segregation
GO:0006271; DNA strand elongation during DNA replication
GO:0031261; DNA replication preinitiation complex
GO:0071165; GINS complex assembly
GO:0034504; protein localization in nucleus
GO:0043596; nuclear replication fork" ; primary_name "psf2" ; product "GINS complex subunit Psf2" ;
chromosome2 GeneDB CDS 1228476 1229027 . - . mRNA SPBC725.13c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1229026 1229151 . - . mRNA SPBC725.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.13c" ; systematic_id "SPBC725.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1229153 1229290 . + . mRNA SPBC725.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.14" ; systematic_id "SPBC725.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1229291 1230793 . + . mRNA SPBC725.14 ; systematic_id "SPBC725.14" ; colour "7" ; gene "arg6 ||| SPBC725.14" ; note "the name arg6 is tentative and was assigned because this is the only gene involved in arginine biosynthesis between ade7 1076817 on contig pB10D8 and ura5 1150778 on contig pB10D8" ; Alias "arg6" ; db_xref "KEGG:MAP00220; ||| SPD:24/24D03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006592; ornithine biosynthesis
GO:0006526; arginine biosynthesis
GO:0006538; glutamate catabolism
GO:0004042; amino-acid N-acetyltransferase activity
GO:0005759; mitochondrial matrix" ; primary_name "arg6" ; product "acetylglutamate synthase Arg6 (predicted)" ; EC_number "2.3.1.1" ;
chromosome2 GeneDB CDS 1229291 1230793 . + . mRNA SPBC725.14 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1230794 1230915 . + . mRNA SPBC725.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.14" ; systematic_id "SPBC725.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1231079 1231726 . + . mRNA SPBC725.15 ; systematic_id "SPBC725.15" ; colour "2" ; gene "ura5 ||| SPBC725.15" ; Alias "ura5" ; db_xref "SPD:42/42F07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML106W and YMR271C; date=19700101 ||| term=complementation, functionally complements S. pombe ura5 mutant; attribution=pers. comm. C. A. Hoffman; cv=complementation; qualifier=overexpression; date=20080218 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004588; orotate phosphoribosyltransferase activity
GO:0006207; 'de novo' pyrimidine base biosynthesis" ; primary_name "ura5" ; product "orotate phosphoribosyltransferase Ura5" ; EC_number "2.4.2.10" ;
chromosome2 GeneDB CDS 1231079 1231726 . + . mRNA SPBC725.15 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1231727 1232120 . + . mRNA SPBC725.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.15" ; systematic_id "SPBC725.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1232574 1233334 . + . mRNA SPBC725.16 ; Alias "res1" ; ID "SPBC725.16" ; db_xref "EMBL:X68789" ; systematic_id "SPBC725.16" ; primary_name "res1" ;
chromosome2 GeneDB CDS_parts 1233335 1235375 . + . mRNA SPBC725.16 ; systematic_id "SPBC725.16" ; colour "2" ; gene "res1 ||| sct1 ||| SPBC725.16" ; Alias "res1" ; db_xref "SPD:40/40G10" ; synonym "sct1" ; GO "GO:0030907; MBF transcription complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0045897; positive regulation of transcription, mitotic
GO:0051037; regulation of transcription, meiotic
GO:0007089; traversing start control point of mitotic cell cycle
GO:0000083; regulation of transcription involved in G1/S phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=APSES domain; date=19700101 ||| term=orthologous to S. cerevisiae YER111C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:11781565; date=20090720 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; date=20100122 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:1464317; date=20100727" ; primary_name "res1" ; product "MBF transcription factor complex subunit Res1" ;
chromosome2 GeneDB CDS 1233335 1233560 . + . mRNA SPBC725.16 ; colour "2" ;
chromosome2 GeneDB CDS 1233688 1235375 . + . mRNA SPBC725.16 ; colour "2" ;
chromosome2 GeneDB misc_feature 1233561 1233566 . + . misc_feature unknown_903 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB intron 1233561 1233687 . + . intron SPBC725.16 ; Alias "res1" ; db_xref "EMBL:X68789" ; systematic_id "SPBC725.16" ; primary_name "res1" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1233672 1233687 . + . misc_feature unknown_904 ; colour "6" ; note "ctaactattcattcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1235376 1235495 . + . mRNA SPBC725.16 ; Alias "res1" ; ID "SPBC725.16" ; db_xref "EMBL:X68789" ; systematic_id "SPBC725.16" ; primary_name "res1" ;
chromosome2 GeneDB 3'-UTR 1235587 1235650 . - . mRNA SPBC725.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.17c" ; systematic_id "SPBC725.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1235651 1236367 . - . mRNA SPBC725.17c ; systematic_id "SPBC725.17c" ; colour "7" ; gene "rrn11 ||| SPBC725.17c" ; Alias "rrn11" ; db_xref "SPD:08/08E05" ; GO "GO:0000120; RNA polymerase I transcription factor complex
GO:0006360; transcription from RNA polymerase I promoter
GO:0003701; RNA polymerase I transcription factor activity
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML043C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rrn11" ; product "RNA polymerase I transcription factor subunit Rrn11 (predicted)" ;
chromosome2 GeneDB CDS 1235651 1235896 . - . mRNA SPBC725.17c ; colour "7" ;
chromosome2 GeneDB CDS 1236011 1236367 . - . mRNA SPBC725.17c ; colour "7" ;
chromosome2 GeneDB misc_feature 1235897 1235909 . - . misc_feature unknown_905 ; colour "6" ; note "ctaacatttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1236005 1236010 . - . misc_feature unknown_906 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1236366 1236465 . - . mRNA SPBC725.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC725.17c" ; systematic_id "SPBC725.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1236671 1236883 . - . mRNA SPBC651.01c ; ID "SPBC651.01c" ; systematic_id "SPBC651.01c" ; note "mRNA from AU010291" ;
chromosome2 GeneDB CDS_parts 1236884 1239176 . - . mRNA SPBC651.01c ; systematic_id "SPBC651.01c" ; colour "7" ; gene "SPBC725.18c ||| SPBC651.01c ||| nog1" ; Alias "nog1" ; db_xref "SPD:33/33G04" ; synonym "SPBC725.18c" ; GO "GO:0005730; nucleolus
GO:0000054; ribosome export from nucleus
GO:0005525; GTP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=orthologous to S. cerevisiae YPL093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nog1" ; product "GTP binding protein Nog1 (predicted)" ;
chromosome2 GeneDB CDS 1236884 1238600 . - . mRNA SPBC651.01c ; colour "7" ;
chromosome2 GeneDB CDS 1238821 1238915 . - . mRNA SPBC651.01c ; colour "7" ;
chromosome2 GeneDB CDS 1239005 1239100 . - . mRNA SPBC651.01c ; colour "7" ;
chromosome2 GeneDB CDS 1239156 1239176 . - . mRNA SPBC651.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 1237791 1237915 . + . misc_feature unknown_907 ; note "nominal overlap with cosmid SPBC651 and cosmid SPBC725" ;
chromosome2 GeneDB misc_feature 1238601 1238615 . - . misc_feature unknown_908 ; colour "6" ; note "ctaacaatttcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1238815 1238820 . - . misc_feature unknown_909 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1238916 1238931 . - . misc_feature unknown_910 ; colour "6" ; note "ctaacgaaaatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1238999 1239004 . - . misc_feature unknown_911 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1239101 1239115 . - . misc_feature unknown_912 ; colour "6" ; note "ttaacattgatgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1239150 1239155 . - . misc_feature unknown_913 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1240151 1240184 . + . mRNA SPBC651.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.02" ; systematic_id "SPBC651.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1240185 1241234 . + . mRNA SPBC651.02 ; db_xref "SPD:16/16A07" ; systematic_id "SPBC651.02" ; colour "7" ; GO "GO:0047710; bis(5'-adenosyl)-triphosphatase activity
GO:0015964; diadenosine triphosphate catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC651.02" ; product "bis(5'-adenosyl)-triphosphatase (predicted)" ;
chromosome2 GeneDB CDS 1240185 1240331 . + . mRNA SPBC651.02 ; colour "7" ;
chromosome2 GeneDB CDS 1240384 1240479 . + . mRNA SPBC651.02 ; colour "7" ;
chromosome2 GeneDB CDS 1240530 1240964 . + . mRNA SPBC651.02 ; colour "7" ;
chromosome2 GeneDB CDS 1241025 1241040 . + . mRNA SPBC651.02 ; colour "7" ;
chromosome2 GeneDB CDS 1241098 1241234 . + . mRNA SPBC651.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 1240332 1240337 . + . misc_feature unknown_914 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1240364 1240383 . + . misc_feature unknown_915 ; colour "6" ; note "ctaatatctctgacatacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1240480 1240485 . + . misc_feature unknown_916 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1240509 1240529 . + . misc_feature unknown_917 ; colour "6" ; note "gtaacaaacttgtctttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1240965 1240970 . + . misc_feature unknown_918 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1241008 1241024 . + . misc_feature unknown_919 ; colour "6" ; note "ctaattaaaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1241041 1241046 . + . misc_feature unknown_920 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1241085 1241097 . + . misc_feature unknown_921 ; colour "6" ; note "ctaatgcatctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1241235 1241307 . + . mRNA SPBC651.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.02" ; systematic_id "SPBC651.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1241525 1241823 . - . mRNA SPBC651.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.03c" ; systematic_id "SPBC651.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1241824 1242945 . - . mRNA SPBC651.03c ; systematic_id "SPBC651.03c" ; colour "2" ; gene "gyp10 ||| SPBC651.03c" ; note "GAP for Ypt" ; Alias "gyp10" ; db_xref "SPD:17/17F07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16291723; date=19700101 ||| term=orthologous to S. cerevisiae YFL027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005783; endoplasmic reticulum
GO:0000920; cell separation during cytokinesis
GO:0035023; regulation of Rho protein signal transduction
GO:0016192; vesicle-mediated transport
GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; primary_name "gyp10" ; product "GTPase activating protein Gyp10" ;
chromosome2 GeneDB CDS 1241824 1242945 . - . mRNA SPBC651.03c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1242944 1243178 . - . mRNA SPBC651.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.03c" ; systematic_id "SPBC651.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1244771 1244846 . + . mRNA SPBC651.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.04" ; systematic_id "SPBC651.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1244847 1245560 . + . mRNA SPBC651.04 ; db_xref "SPD:08/08E02" ; systematic_id "SPBC651.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC651.04" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1244847 1245560 . + . mRNA SPBC651.04 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1245982 1246101 . - . mRNA SPBC651.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.05c" ; systematic_id "SPBC651.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1246102 1246918 . - . mRNA SPBC651.05c ; systematic_id "SPBC651.05c" ; colour "2" ; db_xref "SPD:10/10E05" ; Alias "dot2" ; synonym "vps22" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Defective Organization of Telomeres; cv=name_description; db_xref=PMID:11901107; date=20090817" ; GO "GO:0000814; ESCRT II complex
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0007127; meiosis I
GO:0051300; spindle pole body organization
GO:0045141; telomere clustering
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport" ; primary_name "dot2" ; product "EAP30 family protein Dot2" ;
chromosome2 GeneDB CDS 1246102 1246221 . - . mRNA SPBC651.05c ; colour "2" ;
chromosome2 GeneDB CDS 1246280 1246918 . - . mRNA SPBC651.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 1246222 1246238 . - . misc_feature unknown_922 ; colour "6" ; note "ctaaccaaataatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1246274 1246279 . - . misc_feature unknown_923 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1246917 1247084 . - . mRNA SPBC651.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.05c" ; systematic_id "SPBC651.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1247411 1247483 . + . mRNA SPBC651.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.06" ; systematic_id "SPBC651.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1247484 1249617 . + . mRNA SPBC651.06 ; systematic_id "SPBC651.06" ; colour "8" ; gene "SPBC651.06 ||| mug166 ||| csa1" ; note "COP9/signalosome associated (pers. comm. Tony Carr) ||| merged SPBC651.06 and SPBC651.07 on 26-6-2008, pers. comm. Chary Chahwan" ; Alias "mug166" ; db_xref "SPD:08/08C10" ; obsolete_name "SPBC651.07" ; synonym "csa1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; GO "GO:0045132; meiotic chromosome segregation" ; primary_name "mug166" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1247484 1248086 . + . mRNA SPBC651.06 ; colour "8" ;
chromosome2 GeneDB CDS 1248158 1248241 . + . mRNA SPBC651.06 ; colour "8" ;
chromosome2 GeneDB CDS 1248381 1248481 . + . mRNA SPBC651.06 ; colour "8" ;
chromosome2 GeneDB CDS 1248692 1248921 . + . mRNA SPBC651.06 ; colour "8" ;
chromosome2 GeneDB CDS 1248991 1249073 . + . mRNA SPBC651.06 ; colour "8" ;
chromosome2 GeneDB CDS 1249135 1249617 . + . mRNA SPBC651.06 ; colour "8" ;
chromosome2 GeneDB misc_feature 1247484 1248481 . + . misc_feature SPBC651.06 ; systematic_id "SPBC651.06" ; colour "6" ; note "unmerged 28-07-2009 ||| merged SPBC651.06 and SPBC651.07 on 26-6-2008, pers. comm. Chary Chahwan" ; db_xref "SPD:08/08C10" ; obsolete_name "SPBC651.07" ; Alias "mug166" ; primary_name "mug166" ; product "sequence orphan" ;
chromosome2 GeneDB misc_feature 1248607 1248612 . + . misc_feature unknown_924 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1248676 1248691 . + . misc_feature unknown_925 ; colour "6" ; note "ctaactaaaattgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1248922 1248927 . + . misc_feature unknown_926 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1248971 1248990 . + . misc_feature unknown_927 ; colour "6" ; note "ctaatccgtaaaccaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1249074 1249079 . + . misc_feature unknown_928 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1249119 1249134 . + . misc_feature unknown_929 ; colour "6" ; note "ttaacgcttatactag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1249618 1249996 . + . mRNA SPBC651.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.07" ; systematic_id "SPBC651.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1249888 1250082 . - . mRNA SPBC651.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.08c" ; systematic_id "SPBC651.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1250083 1254350 . - . mRNA SPBC651.08c ; systematic_id "SPBC651.08c" ; colour "7" ; gene "rpc1 ||| SPBC651.08c" ; Alias "rpc1" ; db_xref "SPD:30/30G05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR116C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0006383; transcription from RNA polymerase III promoter
GO:0005666; DNA-directed RNA polymerase III complex" ; primary_name "rpc1" ; product "DNA-directed RNA polymerase III complex large subunit Rpc1 (predicted)" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB CDS 1250083 1254276 . - . mRNA SPBC651.08c ; colour "7" ;
chromosome2 GeneDB CDS 1254327 1254350 . - . mRNA SPBC651.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 1254277 1254291 . - . misc_feature unknown_930 ; colour "6" ; note "ctaatattgtggtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1254321 1254326 . - . misc_feature unknown_931 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1254349 1254453 . - . mRNA SPBC651.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.08c" ; systematic_id "SPBC651.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1255387 1255606 . - . mRNA SPBC651.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.09c" ; systematic_id "SPBC651.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1255607 1257386 . - . mRNA SPBC651.09c ; db_xref "SPD:36/36C08" ; systematic_id "SPBC651.09c" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0016593; Cdc73/Paf1 complex
GO:0016571; histone methylation
GO:0016574; histone ubiquitination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL244W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC651.09c" ; product "RNA polymerase II associated Paf1 complex (predicted)" ;
chromosome2 GeneDB CDS 1255607 1257026 . - . mRNA SPBC651.09c ; colour "7" ;
chromosome2 GeneDB CDS 1257074 1257247 . - . mRNA SPBC651.09c ; colour "7" ;
chromosome2 GeneDB CDS 1257298 1257386 . - . mRNA SPBC651.09c ; colour "7" ;
chromosome2 GeneDB misc_feature 1257027 1257040 . - . misc_feature unknown_932 ; colour "6" ; note "ctaaccaaataaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1257068 1257073 . - . misc_feature unknown_933 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1257248 1257266 . - . misc_feature unknown_934 ; colour "6" ; note "ctaacaaaacatattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1257292 1257297 . - . misc_feature unknown_935 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1257585 1257902 . + . mRNA SPBC651.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.10" ; systematic_id "SPBC651.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1257903 1259069 . + . mRNA SPBC651.10 ; systematic_id "SPBC651.10" ; colour "2" ; gene "nse5 ||| SPBC651.10" ; Alias "nse5" ; db_xref "SPD:18/18D12" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0048478; replication fork protection
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16478984; date=20060504 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; db_xref=PMID:16478984; date=20100727 ||| term=orthologous to S. cerevisiae YML023C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "nse5" ; product "Smc5-6 complex non-SMC subunit Nse5" ;
chromosome2 GeneDB CDS 1257903 1259069 . + . mRNA SPBC651.10 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1259070 1259126 . + . mRNA SPBC651.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.10" ; systematic_id "SPBC651.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1259189 1259270 . - . mRNA SPBC651.11c ; ID "SPBC651.11c" ; systematic_id "SPBC651.11c" ; note "mRNA from AU009268" ;
chromosome2 GeneDB CDS_parts 1259271 1260640 . - . mRNA SPBC651.11c ; systematic_id "SPBC651.11c" ; colour "7" ; gene "apm3 ||| SPBC651.11c" ; Alias "apm3" ; db_xref "SPD:21/21B11" ; GO "GO:0016192; vesicle-mediated transport
GO:0030276; clathrin binding
GO:0006896; Golgi to vacuole transport
GO:0030123; AP-3 adaptor complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR288C; db_xref=PMID:14745133; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "apm3" ; product "AP-3 adaptor complex subunit Apm3 (predicted)" ;
chromosome2 GeneDB CDS 1259271 1260087 . - . mRNA SPBC651.11c ; colour "7" ;
chromosome2 GeneDB CDS 1260136 1260555 . - . mRNA SPBC651.11c ; colour "7" ;
chromosome2 GeneDB CDS 1260600 1260640 . - . mRNA SPBC651.11c ; colour "7" ;
chromosome2 GeneDB misc_feature 1260088 1260104 . - . misc_feature unknown_936 ; colour "6" ; note "ctaaccgcatgatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1260130 1260135 . - . misc_feature unknown_937 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1260556 1260572 . - . misc_feature unknown_938 ; colour "6" ; note "ttaatcaagttgactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1260594 1260599 . - . misc_feature unknown_939 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1260639 1260669 . - . mRNA SPBC651.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.11c" ; systematic_id "SPBC651.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1260941 1261018 . - . mRNA SPBC651.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.12c" ; systematic_id "SPBC651.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1261019 1261840 . - . mRNA SPBC651.12c ; db_xref "SPD:10/10F03" ; systematic_id "SPBC651.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC651.12c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1261019 1261840 . - . mRNA SPBC651.12c ; colour "8" ;
chromosome2 GeneDB misc_feature 1261651 1261840 . - . misc_feature unknown_940 ; note "SPBC651.12c hypothetical proteincompletely contained within c651." ;
chromosome2 GeneDB misc_feature 1261651 1263140 . + . misc_feature unknown_941 ; note "nominal overlap with cosmid SPBC31A8 and cosmid SPBC651" ;
chromosome2 GeneDB 5'-UTR 1261839 1261988 . - . mRNA SPBC651.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC651.12c" ; systematic_id "SPBC651.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1262315 1262677 . - . mRNA SPBC31A8.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31A8.01c" ; systematic_id "SPBC31A8.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1262678 1263604 . - . mRNA SPBC31A8.01c ; systematic_id "SPBC31A8.01c" ; colour "2" ; db_xref "SPD:32/32B04" ; Alias "rtn1" ; synonym "cwl1 ||| SPBC651.13c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cytokinesis defects; db_xref=PMID:20434336; cv=phenotype; date=20100517 ||| term=phenotype, cell wall defects; qualifier=overexpression; db_xref=PMID:8873452; cv=phenotype; date=20100517 ||| term=orthologous to S. cerevisiae YDR233C and YDL204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; GO "GO:0032541; cortical endoplasmic reticulum
GO:0032153; cell division site
GO:0005783; endoplasmic reticulum
GO:0005635; nuclear envelope
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
; regulation of site selection involved in cell cycle cytokinesis
GO:0071786; endoplasmic reticulum tubular network organization" ; primary_name "rtn1" ; product "reticulon-like protein Rtn1" ;
chromosome2 GeneDB CDS 1262678 1263604 . - . mRNA SPBC31A8.01c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1263605 1263772 . - . mRNA SPBC31A8.01c ; ID "SPBC31A8.01c" ; systematic_id "SPBC31A8.01c" ; note "from AY164796" ;
chromosome2 GeneDB misc_feature 1263773 1268092 . + . misc_feature unknown_942 ; note "gene free region" ;
chromosome2 GeneDB misc_feature 1265480 1266266 . + . misc_feature unknown_943 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1367" ;
chromosome2 GeneDB misc_feature 1266525 1267499 . + . misc_feature unknown_944 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "SPNG1370" ;
chromosome2 GeneDB CDS_parts 1268093 1268452 . + . mRNA SPBC31A8.02 ; systematic_id "SPBC31A8.02" ; synonym "SPBC3D6.01" ; pseudo "_no_value" ; colour "13" ; controlled_curation "term=warning, no initiator methionine; date=20100127" ; product "pseudogene" ;
chromosome2 GeneDB CDS 1268093 1268452 . + . mRNA SPBC31A8.02 ; colour "13" ;
chromosome2 GeneDB misc_feature 1268094 1268293 . + . misc_feature unknown_945 ; note "nominal overlap with cosmid SPBC31A8 and cosmid SPBC3D6" ;
chromosome2 GeneDB 5'-UTR 1268477 1269747 . + . mRNA SPBC3D6.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3D6.02" ; systematic_id "SPBC3D6.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1269748 1270920 . + . mRNA SPBC3D6.02 ; systematic_id "SPBC3D6.02" ; colour "2" ; gene "but2 ||| SPBC3D6.02" ; Alias "but2" ; db_xref "SPD:18/18E12" ; GO "GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:14623327; date=20100712 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAC27D7.09c and SPAC27D7.11c (paralogs); date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070719 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "but2" ; product "But2 family protein But2" ;
chromosome2 GeneDB CDS 1269748 1270920 . + . mRNA SPBC3D6.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1270921 1271449 . + . mRNA SPBC3D6.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3D6.02" ; systematic_id "SPBC3D6.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1271978 1274014 . - . mRNA SPBC3D6.03c ; systematic_id "SPBC3D6.03c" ; colour "2" ; gene "SPBC3D6.03c ||| trz2" ; Alias "trz2" ; db_xref "SPD:27/27E12" ; synonym "sptrz2" ; GO "GO:0042781; 3'-tRNA processing endoribonuclease activity
GO:0034414; tRNA 3'-trailer cleavage, endonucleolytic
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR079C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20090628 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:19555350; date=20090628 ||| term=protein sequence feature, mitochondrial signal sequence; db_xref=PMID:21208191; evidence=IMP; date=20110110 ||| term=phenotype, cell morphology, swollen cells; qualifier=overexpression; db_xref=PMID:21208191; date=20110110 ||| term=phenotype, growth defect, slow growth; qualifier=overexpression; db_xref=PMID:21208191; date=20110110" ; primary_name "trz2" ; product "mitochondrial 3'-tRNA processing endonuclease Trz2" ;
chromosome2 GeneDB CDS 1271978 1274014 . - . mRNA SPBC3D6.03c ; colour "2" ;
chromosome2 GeneDB misc_feature 1272580 1272585 . + . misc_feature unknown_946 ; note "res site" ;
chromosome2 GeneDB CDS_parts 1274250 1274670 . + . mRNA SPBC3D6.15 ; systematic_id "SPBC3D6.15" ; colour "7" ; gene "rps2501 ||| rps25-1 ||| SPBC3D6.15" ; Alias "rps2501" ; db_xref "SPD:31/31D07" ; synonym "rps25-1" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR027C and YLR333C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "rps2501" ; product "40S ribosomal protein S25 (predicted)" ;
chromosome2 GeneDB CDS 1274250 1274252 . + . mRNA SPBC3D6.15 ; colour "7" ;
chromosome2 GeneDB CDS 1274303 1274543 . + . mRNA SPBC3D6.15 ; colour "7" ;
chromosome2 GeneDB CDS 1274648 1274670 . + . mRNA SPBC3D6.15 ; colour "7" ;
chromosome2 GeneDB misc_feature 1274253 1274258 . + . misc_feature unknown_947 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1274285 1274302 . + . misc_feature unknown_948 ; colour "6" ; note "ctaattccatattattag, splice branch and acceptor seque nce" ;
chromosome2 GeneDB intron 1274544 1274647 . + . intron SPBC3D6.15 ; systematic_id "SPBC3D6.15" ; note "confirmed" ;
chromosome2 GeneDB 3'-UTR 1274671 1274694 . + . mRNA SPBC3D6.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3D6.15" ; systematic_id "SPBC3D6.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1274979 1277098 . - . mRNA SPBC3D6.04c ; systematic_id "SPBC3D6.04c" ; colour "2" ; gene "mad1 ||| SPBC3D6.04c" ; Alias "mad1" ; db_xref "SPD:37/37D06" ; GO "; condensed nuclear chromosome kinetochore
GO:0007094; mitotic spindle checkpoint
GO:0005515; protein binding" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGL086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=name description, Mitotic Arrest Deficient; date=20100606" ; primary_name "mad1" ; product "mitotic spindle checkpoint protein Mad1" ;
chromosome2 GeneDB CDS 1274979 1276897 . - . mRNA SPBC3D6.04c ; colour "2" ;
chromosome2 GeneDB CDS 1276948 1277098 . - . mRNA SPBC3D6.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 1276898 1276911 . - . misc_feature unknown_949 ; colour "6" ; note "ctgacaccctgtag, splice branch and acceptor sequence" ;
chromosome2 GeneDB misc_feature 1276942 1276947 . - . misc_feature unknown_950 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 1278358 1279373 . + . mRNA SPBC3D6.05 ; systematic_id "SPBC3D6.05" ; colour "2" ; gene "ptp4 ||| SPBC3D6.05" ; Alias "ptp4" ; db_xref "SPD:15/15A12" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0004605; phosphatidate cytidylyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR311C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "ptp4" ; product "phosphatidate cytidylyltransferase Ptp4 (predicted)" ;
chromosome2 GeneDB CDS 1278358 1278433 . + . mRNA SPBC3D6.05 ; colour "2" ;
chromosome2 GeneDB CDS 1278471 1278709 . + . mRNA SPBC3D6.05 ; colour "2" ;
chromosome2 GeneDB CDS 1279032 1279373 . + . mRNA SPBC3D6.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 1278434 1278439 . + . misc_feature unknown_951 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1278457 1278470 . + . misc_feature unknown_952 ; colour "6" ; note "ttaaccgggtctag, splice branch and acceptor sequence" ;
chromosome2 GeneDB misc_feature 1278710 1278715 . + . misc_feature unknown_953 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1279018 1279031 . + . misc_feature unknown_954 ; colour "6" ; note "ctaactaagttcag, splice branch and acceptor sequence" ;
chromosome2 GeneDB 3'-UTR 1279752 1279901 . - . mRNA SPBC3D6.06c ; ID "SPBC3D6.06c" ; systematic_id "SPBC3D6.06c" ; note "mRNA from AU014399" ;
chromosome2 GeneDB CDS_parts 1279902 1281349 . - . mRNA SPBC3D6.06c ; db_xref "SPD:23/23C10" ; systematic_id "SPBC3D6.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL068W and YER099C and YHL011C and YKL181W and YOL061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0004749; ribose phosphate diphosphokinase activity
GO:0006189; 'de novo' IMP biosynthesis
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0000105; histidine biosynthesis
GO:0006166; purine ribonucleoside salvage
GO:0000162; tryptophan biosynthesis
GO:0005737; cytoplasm" ; gene "SPBC3D6.06c" ; product "ribose-phosphate pyrophosphokinase (predicted)" ; EC_number "2.7.6.1" ;
chromosome2 GeneDB CDS 1279902 1280820 . - . mRNA SPBC3D6.06c ; colour "7" ;
chromosome2 GeneDB CDS 1281243 1281349 . - . mRNA SPBC3D6.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 1280821 1280840 . - . misc_feature unknown_955 ; colour "6" ; note "ttaacgtgtatttattgcag, splice branch and acceptor seq uence" ;
chromosome2 GeneDB misc_feature 1281237 1281242 . - . misc_feature unknown_956 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1282415 1282594 . + . mRNA SPBC3D6.07 ; ID "SPBC3D6.07" ; db_xref "PMID:18488015" ; systematic_id "SPBC3D6.07" ; synonym "From Solexa transcript data SPNG1372" ;
chromosome2 GeneDB CDS_parts 1282754 1284325 . + . mRNA SPBC3D6.07 ; systematic_id "SPBC3D6.07" ; colour "7" ; gene "gpi3 ||| SPBC3D6.07" ; Alias "gpi3" ; db_xref "SPD:25/25D03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, paroxysmal nocturnal haemoglobinuri; date=20060920 ||| term=orthologous to S. cerevisiae YPL175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0005783; endoplasmic reticulum
GO:0008194; UDP-glycosyltransferase activity
GO:0017176; phosphatidylinositol N- acetylglucosaminyltransferase activity
GO:0000506; glycosylphosphatidylinositol-N- acetylglu cosaminyltransferase( GPI-GnT)complex" ; primary_name "gpi3" ; product "pig-A, phosphatidylinositol N- acetylglucosaminyltransferase subunit Gpi3 (predicted)" ; EC_number "2.4.1.198" ;
chromosome2 GeneDB CDS 1282754 1282850 . + . mRNA SPBC3D6.07 ; colour "7" ;
chromosome2 GeneDB CDS 1282911 1282990 . + . mRNA SPBC3D6.07 ; colour "7" ;
chromosome2 GeneDB CDS 1283046 1283323 . + . mRNA SPBC3D6.07 ; colour "7" ;
chromosome2 GeneDB CDS 1283367 1283482 . + . mRNA SPBC3D6.07 ; colour "7" ;
chromosome2 GeneDB CDS 1283526 1284325 . + . mRNA SPBC3D6.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 1282851 1282856 . + . misc_feature unknown_957 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1282892 1282910 . + . misc_feature unknown_958 ; colour "6" ; note "ctaacatgcattatattag, splice branch and acceptor sequ ence" ;
chromosome2 GeneDB misc_feature 1282991 1282996 . + . misc_feature unknown_959 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1283033 1283045 . + . misc_feature unknown_960 ; colour "6" ; note "ctaaacaatgcag, splice branch and acceptor sequence" ;
chromosome2 GeneDB misc_feature 1283324 1283329 . + . misc_feature unknown_961 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1283355 1283366 . + . misc_feature unknown_962 ; colour "6" ; note "ttaactaagaag, , splice branch and acceptor sequence" ;
chromosome2 GeneDB misc_feature 1283483 1283488 . + . misc_feature unknown_963 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1283513 1283525 . + . misc_feature unknown_964 ; colour "6" ; note "ctaacatttttag, splice branch and acceptor sequence" ;
chromosome2 GeneDB 3'-UTR 1284338 1284488 . - . mRNA SPBC3D6.08c ; ID "SPBC3D6.08c" ; systematic_id "SPBC3D6.08c" ; note "mRNA from AU011798" ;
chromosome2 GeneDB CDS_parts 1284489 1285084 . - . mRNA SPBC3D6.08c ; systematic_id "SPBC3D6.08c" ; colour "7" ; gene "SPBC3D6.08c ||| lsm1" ; Alias "lsm1" ; db_xref "SPD:06/06E10" ; GO "GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0003723; RNA binding
GO:0006364; rRNA processing
GO:0000290; deadenylation-dependent decapping
GO:0005845; mRNA cap complex
GO:0000932; cytoplasmic mRNA processing body
GO:0000339; RNA cap binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsm1" ; product "mRNA decapping complex subunit (predicted)" ;
chromosome2 GeneDB CDS 1284489 1284662 . - . mRNA SPBC3D6.08c ; colour "7" ;
chromosome2 GeneDB CDS 1284740 1284855 . - . mRNA SPBC3D6.08c ; colour "7" ;
chromosome2 GeneDB CDS 1284904 1284972 . - . mRNA SPBC3D6.08c ; colour "7" ;
chromosome2 GeneDB CDS 1285021 1285084 . - . mRNA SPBC3D6.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 1284663 1284679 . - . misc_feature unknown_965 ; colour "6" ; note "ctaaatatttcgaaaag, splice branch and acceptor sequen ce" ;
chromosome2 GeneDB intron 1284663 1284739 . - . intron SPBC3D6.08c ; systematic_id "SPBC3D6.08c" ; note "confirmed by mRNA AU011331" ;
chromosome2 GeneDB misc_feature 1284734 1284739 . - . misc_feature unknown_966 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1284856 1284867 . - . misc_feature unknown_967 ; colour "6" ; note "ctaactgtgtag, splice branch and acceptor sequence" ;
chromosome2 GeneDB intron 1284856 1284903 . - . intron SPBC3D6.08c ; systematic_id "SPBC3D6.08c" ; note "confirmed by mRNA AU011331" ;
chromosome2 GeneDB misc_feature 1284898 1284903 . - . misc_feature unknown_968 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1284973 1284989 . - . misc_feature unknown_969 ; colour "6" ; note "ctaactttaccttttag, splice branch and acceptor sequen ce" ;
chromosome2 GeneDB intron 1284973 1285020 . - . intron SPBC3D6.08c ; systematic_id "SPBC3D6.08c" ; note "confirmed by mRNA AU011331" ;
chromosome2 GeneDB misc_feature 1285015 1285020 . - . misc_feature unknown_970 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1285085 1285133 . - . mRNA SPBC3D6.08c ; ID "SPBC3D6.08c" ; systematic_id "SPBC3D6.08c" ; note "mRNA from AU011331" ;
chromosome2 GeneDB 5'-UTR 1285965 1286142 . + . mRNA SPBC3D6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3D6.09" ; systematic_id "SPBC3D6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1286143 1286945 . + . mRNA SPBC3D6.09 ; systematic_id "SPBC3D6.09" ; colour "2" ; gene "dpb4 ||| SPBC3D6.09" ; Alias "dpb4" ; db_xref "SPD:10/10B08" ; GO "GO:0005515; protein binding
GO:0006270; DNA replication initiation
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0003887; DNA-directed DNA polymerase activity
GO:0008622; epsilon DNA polymerase complex
GO:0000790; nuclear chromatin
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; db_xref=PMID:15388803; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15388803; date=19700101 ||| term=orthologous to S. cerevisiae YDR121W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human POLE3 ortholog; date=20091020" ; primary_name "dpb4" ; product "DNA polymerase epsilon subunit Dpb4" ;
chromosome2 GeneDB CDS 1286143 1286315 . + . mRNA SPBC3D6.09 ; colour "2" ;
chromosome2 GeneDB CDS 1286448 1286566 . + . mRNA SPBC3D6.09 ; colour "2" ;
chromosome2 GeneDB CDS 1286605 1286945 . + . mRNA SPBC3D6.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 1286316 1286321 . + . misc_feature unknown_971 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1286434 1286447 . + . misc_feature unknown_972 ; colour "6" ; note "ctaacgttacttag, splice branch and acceptor sequence" ;
chromosome2 GeneDB misc_feature 1286567 1286572 . + . misc_feature unknown_973 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1286592 1286604 . + . misc_feature unknown_974 ; colour "6" ; note "ctaactattaaag, splice branch and acceptor sequence" ;
chromosome2 GeneDB 3'-UTR 1286946 1287121 . + . mRNA SPBC3D6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3D6.09" ; systematic_id "SPBC3D6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1287406 1289014 . + . mRNA SPBC3D6.10 ; systematic_id "SPBC3D6.10" ; colour "2" ; db_xref "SPD:25/25G11" ; Alias "apn2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16857169; date=20060823 ||| term=orthologous to S. cerevisiae YBL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006284; base-excision repair
GO:0034614; cellular response to reactive oxygen species
GO:0005634; nucleus
GO:0008311; double-stranded DNA specific 3'-5' exodeoxyribonuclease activity
GO:0004528; phosphodiesterase I activity" ; primary_name "apn2" ; product "AP-endonuclease Apn2" ;
chromosome2 GeneDB CDS 1287406 1288198 . + . mRNA SPBC3D6.10 ; colour "2" ;
chromosome2 GeneDB CDS 1288236 1289014 . + . mRNA SPBC3D6.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 1288199 1288204 . + . misc_feature unknown_975 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 1288199 1288235 . + . intron SPBC3D6.10 ; Alias "apn2" ; systematic_id "SPBC3D6.10" ; primary_name "apn2" ; note "intron confirmed by EMBL:AY483158" ;
chromosome2 GeneDB misc_feature 1288214 1288235 . + . misc_feature unknown_976 ; colour "6" ; note "ttattttttttacaatggatag, splice branch and acceptor s equence" ;
chromosome2 GeneDB 3'-UTR 1288332 1289150 . - . mRNA SPBC3D6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3D6.11c" ; systematic_id "SPBC3D6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1289015 1290094 . + . mRNA SPBC3D6.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3D6.10" ; systematic_id "SPBC3D6.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1289151 1289960 . - . mRNA SPBC3D6.11c ; systematic_id "SPBC3D6.11c" ; colour "2" ; gene "slx8 ||| SPBC3D6.11c" ; Alias "slx8" ; db_xref "SPD:10/10D01" ; controlled_curation "term=phenotype, inviable; cv=phenotype; db_xref=PMID:17762865; date=20071123 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=human RNF4 family; qualifier=false_negative; date=20070530 ||| term=orthologous to S. cerevisiae YER116C; date=19700101 ||| term=complementation, functionally complemented by human RNF4; db_xref=PMID:17762865; cv=complementation; date=20071123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:17762864; date=20100727" ; GO "GO:0033768; SUMO-targeted ubiquitin ligase complex
GO:0033768; SUMO-targeted ubiquitin ligase complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0000077; DNA damage checkpoint
GO:0006310; DNA recombination
GO:0033234; negative regulation of protein sumoylation
GO:0033234; negative regulation of protein sumoylation
GO:0016567; protein ubiquitination
GO:0016567; protein ubiquitination" ; primary_name "slx8" ; product "SUMO-targeted ubiquitin-protein ligase E3 Slx8 (predicted)" ; reserved_name "slx8" ;
chromosome2 GeneDB CDS 1289151 1289960 . - . mRNA SPBC3D6.11c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1289959 1290203 . - . mRNA SPBC3D6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3D6.11c" ; systematic_id "SPBC3D6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1290530 1290563 . + . mRNA SPBC3D6.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3D6.12" ; systematic_id "SPBC3D6.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1290564 1293332 . + . mRNA SPBC3D6.12 ; db_xref "SPD:39/39B03" ; systematic_id "SPBC3D6.12" ; colour "7" ; GO "GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR129W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC3D6.12" ; product "U3 snoRNA associted protein Dip2 (predicted)" ;
chromosome2 GeneDB CDS 1290564 1293332 . + . mRNA SPBC3D6.12 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1293333 1293435 . + . mRNA SPBC3D6.12 ; ID "SPBC3D6.12" ; systematic_id "SPBC3D6.12" ; note "mRNA from AU014071" ;
chromosome2 GeneDB 3'-UTR 1293502 1293701 . - . mRNA SPBC3D6.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3D6.13c" ; systematic_id "SPBC3D6.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1293702 1295882 . - . mRNA SPBC3D6.13c ; systematic_id "SPBC3D6.13c" ; colour "7" ; gene "SPBC3D6.13c" ; Alias "pdi2" ; db_xref "SPD:37/37G11" ; GO "GO:0003756; protein disulfide isomerase activity
GO:0005789; endoplasmic reticulum membrane
GO:0006621; protein retention in ER
GO:0030433; ER-associated protein catabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pdi2" ; product "ER associated protein disulfide isomerase Pdi2 (predicted)" ; reserved_name "pdi2" ;
chromosome2 GeneDB CDS 1293702 1295882 . - . mRNA SPBC3D6.13c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1295881 1296033 . - . mRNA SPBC3D6.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3D6.13c" ; systematic_id "SPBC3D6.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1296790 1297523 . - . misc_RNA SPNCRNA.570 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.570" ; synonym "SPNG2AF44" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB CDS_parts 1296915 1297260 . + . mRNA SPBC3D6.16 ; db_xref "SPD:52/52E06" ; systematic_id "SPBC3D6.16" ; colour "6" ; gene "SPBC3D6.16" ; product "dubious" ; note "no evidence from affey/Solexa" ;
chromosome2 GeneDB CDS 1296915 1296963 . + . mRNA SPBC3D6.16 ; colour "6" ;
chromosome2 GeneDB CDS 1297022 1297260 . + . mRNA SPBC3D6.16 ; colour "6" ;
chromosome2 GeneDB 3'-UTR 1297904 1299490 . - . mRNA SPBC30B4.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.01c" ; systematic_id "SPBC30B4.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1298034 1298485 . - . misc_feature unknown_977 ; note "possibly coding?" ;
chromosome2 GeneDB CDS_parts 1299491 1300615 . - . mRNA SPBC30B4.01c ; systematic_id "SPBC30B4.01c" ; colour "2" ; gene "wsc1 ||| SPBC3D6.14c ||| SPBC30B4.01c" ; note "52 consecutive serines" ; Alias "wsc1" ; db_xref "SPD:15/15F09" ; synonym "SPBC3D6.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=; date=19700101 ||| term=orthologous to S. cerevisiae YOR008C and YNL283C and YOL105C and YHL028W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; qualifier=inferred from context; date=19700101 ||| term=modification, mannosylated; cv=pt_mod; qualifier=O-linked; db_xref=PMID:15948957; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=warning, gene structure updated; cv=warning; date=20031112" ; GO "GO:0004888; transmembrane receptor activity
GO:0023034; intracellular signaling cascade
GO:0033554; cellular response to stress
GO:0031505; cell wall organization and biogenesis
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0005886; plasma membrane
GO:0030246; carbohydrate binding
GO:0007166; cell surface receptor linked signal transduction" ; primary_name "wsc1" ; product "transmembrane receptor Wsc1 (predicted)" ;
chromosome2 GeneDB CDS 1299491 1300615 . - . mRNA SPBC30B4.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 1299492 1300422 . + . misc_feature unknown_978 ; note "nominal overlap with cosmid SPBC30B4 and cosmid SPBC3D6" ;
chromosome2 GeneDB 5'-UTR 1300614 1301258 . - . mRNA SPBC30B4.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.01c" ; systematic_id "SPBC30B4.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1301695 1301940 . - . mRNA SPBC30B4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.02c" ; systematic_id "SPBC30B4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1301941 1304028 . - . mRNA SPBC30B4.02c ; db_xref "SPD:37/37C11" ; systematic_id "SPBC30B4.02c" ; colour "7" ; GO "GO:0000398; nuclear mRNA splicing via spliceosome
GO:0030490; maturation of SSU-rRNA
GO:0030688; pre-ribosome, small subunit precursor" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=orthologous to S. cerevisiae YNL224C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC30B4.02c" ; product "R3H and G-patch domain, implicated in splicing (predicted)" ;
chromosome2 GeneDB CDS 1301941 1304028 . - . mRNA SPBC30B4.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1304027 1304117 . - . mRNA SPBC30B4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.02c" ; systematic_id "SPBC30B4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1304614 1304820 . - . mRNA SPBC30B4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.03c" ; systematic_id "SPBC30B4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1304821 1305996 . - . mRNA SPBC30B4.03c ; systematic_id "SPBC30B4.03c" ; colour "7" ; db_xref "SPD:43/43H10" ; Alias "adn1" ; GO "GO:0010811; positive regulation of cell substrate adhesion
GO:0003712; transcription cofactor activity
GO:0006350; transcription" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL233W; date=19700101 ||| term=name description, ADhesioN defective; db_xref=PMID:19542312; date=20090629 ||| term=phenotype, adhesion defects, cell-substrate adhesion, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; date=20090706 ||| term=human LDB1 and LDB2 ortholog; db_xref=Pfam:PF01803; date=20091215 ||| term=species distribution, conserved in Metazoa; db_xref=Pfam:PF01803; date=20091215 ||| term=species distribution, conserved in Vertebrates; db_xref=Pfam:PF01803; date=20091215 ||| term=species distribution, conserved in Fungi; db_xref=Pfam:PF01803; date=20091215 ||| term=species distribution, conserved in Eukaryotes; db_xref=Pfam:PF01803; date=20091215 ||| term=species distribution, conserved in Eukaryotes only; db_xref=Pfam:PF01803; date=20091215" ; primary_name "adn1" ; product "adhesion defective protein, predicted transcriptional regulator (predicted)" ;
chromosome2 GeneDB CDS 1304821 1305996 . - . mRNA SPBC30B4.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1305995 1306043 . - . mRNA SPBC30B4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.03c" ; systematic_id "SPBC30B4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1308351 1309126 . - . mRNA SPBC30B4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.04c" ; systematic_id "SPBC30B4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1308619 1308619 . + . misc_feature unknown_979 ; note "dicrepancy: with published U14 small nuclear RNA gen e and with cosmid c1268 sequence - additional T residue ins ertion at base 9128" ;
chromosome2 GeneDB snoRNA 1308634 1308745 . + . snoRNA SPSNORNA.21 ; Alias "snoU14" ; db_xref "RFAM:RF00016" ; systematic_id "SPSNORNA.21" ; primary_name "snoU14" ; gene "snoU14 ||| SPSNORNA.21" ; product "small nucleolar RNA U14" ;
chromosome2 GeneDB CDS_parts 1309127 1311724 . - . mRNA SPBC30B4.04c ; systematic_id "SPBC30B4.04c" ; colour "2" ; gene "sol1 ||| SPBC30B4.04c" ; Alias "sol1" ; db_xref "SPD:47/47A01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Switch One Like; cv=gene_name_description; date=20061009 ||| term=ARID domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL016W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, sensitive to cold; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0016514; SWI/SNF complex
GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0016514; SWI/SNF complex" ; primary_name "sol1" ; product "SWI/SNF complex subunit Sol1" ; reserved_name "sol1" ;
chromosome2 GeneDB CDS 1309127 1311724 . - . mRNA SPBC30B4.04c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1311723 1311760 . - . mRNA SPBC30B4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.04c" ; systematic_id "SPBC30B4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1312125 1313175 . + . misc_RNA SPNCRNA.346 ; db_xref "PMID:18488015" ; synonym "SPNG1380" ; systematic_id "SPNCRNA.346" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 1313231 1316183 . + . mRNA SPBC30B4.05 ; systematic_id "SPBC30B4.05" ; colour "2" ; gene "kap109 ||| SPBC30B4.05" ; Alias "kap109" ; db_xref "SPD:47/47E12" ; GO "GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0005525; GTP binding
GO:0008565; protein transporter activity
GO:0051301; cell division
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=HEAT repeat; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGL238W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "kap109" ; product "karyopherin Kap109" ;
chromosome2 GeneDB CDS 1313231 1313288 . + . mRNA SPBC30B4.05 ; colour "2" ;
chromosome2 GeneDB CDS 1313338 1316183 . + . mRNA SPBC30B4.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 1313289 1313294 . + . misc_feature unknown_980 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1313325 1313337 . + . misc_feature unknown_981 ; colour "6" ; note "ctaactgatatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1316220 1316375 . - . mRNA SPBC30B4.06c ; ID "SPBC30B4.06c" ; systematic_id "SPBC30B4.06c" ; note "mRNA from AU009583" ;
chromosome2 GeneDB CDS_parts 1316376 1318376 . - . mRNA SPBC30B4.06c ; db_xref "SPD:37/37B09" ; systematic_id "SPBC30B4.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL236C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0006412; translation
GO:0002098; tRNA wobble uridine modification" ; product "mitochondrial GIDA family tRNA uridine 5- carboxymethylaminomethyl modification enzyme (predicted)" ;
chromosome2 GeneDB CDS 1316376 1318376 . - . mRNA SPBC30B4.06c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1318375 1318472 . - . mRNA SPBC30B4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.06c" ; systematic_id "SPBC30B4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1319070 1319537 . - . mRNA SPBC30B4.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.07c" ; systematic_id "SPBC30B4.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1319538 1320493 . - . mRNA SPBC30B4.07c ; systematic_id "SPBC30B4.07c" ; colour "2" ; gene "tfb4 ||| SPBC30B4.07c" ; Alias "tfb4" ; db_xref "SPD:13/13E03" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0006289; nucleotide-excision repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YPR056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human GTF2H3 ortholog; date=20110113" ; primary_name "tfb4" ; product "transcription factor TFIIH complex subunit Tfb4" ;
chromosome2 GeneDB CDS 1319538 1319620 . - . mRNA SPBC30B4.07c ; colour "2" ;
chromosome2 GeneDB CDS 1319683 1320493 . - . mRNA SPBC30B4.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 1319621 1319633 . - . misc_feature unknown_982 ; colour "6" ; note "ctaacctctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1319677 1319682 . - . misc_feature unknown_983 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1320492 1320617 . - . mRNA SPBC30B4.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.07c" ; systematic_id "SPBC30B4.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1320692 1321833 . + . mRNA SPBC30B4.08 ; systematic_id "SPBC30B4.08" ; colour "2" ; note "the exonucleolytic trimming to generate mature 3'- end of 5.8S rRNA from tricistronic rRNA transcript function is performed by S. cerevisiae ortholog NRG2 which is not orthologous to eri1 PMID:18438419" ; db_xref "SPD:18/18A07" ; Alias "eri1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SAP domain; db_xref=PMID:16797182; date=20060922 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:16797182; date=20100126" ; GO "GO:0005737; cytoplasm
GO:0000175; 3'-5'-exoribonuclease activity
GO:0032296; double-stranded RNA-specific ribonuclease activity
GO:0000467; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0060906; negative regulation of chromatin silencing by small RNA" ; primary_name "eri1" ; product "double-strand siRNA ribonuclease Eri1" ;
chromosome2 GeneDB CDS 1320692 1320819 . + . mRNA SPBC30B4.08 ; colour "2" ;
chromosome2 GeneDB CDS 1320897 1321004 . + . mRNA SPBC30B4.08 ; colour "2" ;
chromosome2 GeneDB CDS 1321066 1321471 . + . mRNA SPBC30B4.08 ; colour "2" ;
chromosome2 GeneDB CDS 1321534 1321833 . + . mRNA SPBC30B4.08 ; colour "2" ;
chromosome2 GeneDB misc_feature 1320820 1320825 . + . misc_feature unknown_984 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1321042 1321065 . + . misc_feature unknown_985 ; colour "6" ; note "ctaacagtaactgaatacttgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1321113 1321951 . - . mRNA SPBC27B12.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.01c" ; systematic_id "SPBC27B12.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1321472 1321477 . + . misc_feature unknown_986 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1321514 1321533 . + . misc_feature unknown_987 ; colour "6" ; note "ctaacaaatcgtattatcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1321834 1322324 . + . mRNA SPBC30B4.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30B4.08" ; systematic_id "SPBC30B4.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1321952 1323100 . - . mRNA SPBC27B12.01c ; systematic_id "SPBC27B12.01c" ; colour "7" ; gene "mmm1 ||| SPBC30B4.09c ||| SPBC27B12.01c" ; note "alternative splicing may exist using internal donors at positions 22869 and 22968" ; Alias "mmm1" ; db_xref "SPD:18/18B07" ; synonym "SPBC30B4.09c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL006W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0032865; Mdm10/Mdm12/Mmm1 complex
GO:0005741; mitochondrial outer membrane
GO:0000002; mitochondrial genome maintenance
GO:0000001; mitochondrion inheritance
GO:0007005; mitochondrion organization and biogenesis
GO:0045040; protein import into mitochondrial outer membrane" ; primary_name "mmm1" ; product "Mdm10/Mdm12/Mmm1 complex subunit Mmm1 (predicted)" ;
chromosome2 GeneDB CDS 1321952 1322042 . - . mRNA SPBC27B12.01c ; colour "7" ;
chromosome2 GeneDB CDS 1322087 1322295 . - . mRNA SPBC27B12.01c ; colour "7" ;
chromosome2 GeneDB CDS 1322360 1323100 . - . mRNA SPBC27B12.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 1322043 1322059 . - . misc_feature unknown_988 ; colour "6" ; note "ctaactaattcccacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1322081 1322086 . - . misc_feature unknown_989 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1322215 1324773 . + . misc_feature unknown_990 ; note "nominal overlap with SPBC27B12 and cosmid SPBC30B4" ;
chromosome2 GeneDB misc_feature 1322296 1322311 . - . misc_feature unknown_991 ; colour "6" ; note "ctaacatttgtcctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1322354 1322359 . - . misc_feature unknown_992 ; colour "6" ; note "gtattc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1322429 1322434 . - . misc_feature unknown_993 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1323099 1323256 . - . mRNA SPBC27B12.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.01c" ; systematic_id "SPBC27B12.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB conflict 1323267 1323278 . + . conflict unknown_994 ; citation "[1]" ; note "12 Ts in SPBC27B12 and SPAB4539, but only 11 in SPAC30B4, we have altered c30B4 to agree with the consensus to allow contiguation" ;
chromosome2 GeneDB 5'-UTR 1323589 1323739 . + . mRNA SPBC27B12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.02" ; systematic_id "SPBC27B12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1323740 1324069 . + . mRNA SPBC27B12.02 ; systematic_id "SPBC27B12.02" ; colour "8" ; gene "SPBC30B4.10 ||| SPBC27B12.02" ; Alias "SPBC30B4.10" ; db_xref "SPD:01/01H03" ; synonym "SPBC30B4.10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; primary_name "SPBC30B4.10" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1323740 1324069 . + . mRNA SPBC27B12.02 ; colour "8" ;
chromosome2 GeneDB misc_feature 1323740 1324069 . + . misc_feature unknown_995 ; note "CDS SPBC27B12.02 completely contained in c27B12" ;
chromosome2 GeneDB 3'-UTR 1324070 1324140 . + . mRNA SPBC27B12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.02" ; systematic_id "SPBC27B12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1324250 1324474 . - . mRNA SPBC27B12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.03c" ; systematic_id "SPBC27B12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1324475 1325464 . - . mRNA SPBC27B12.03c ; systematic_id "SPBC27B12.03c" ; colour "2" ; gene "SPBC27B12.03c" ; Alias "erg32" ; db_xref "SPD:32/32C05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=orthologous to S. cerevisiae YLR056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000248; C-5 sterol desaturase activity
GO:0006696; ergosterol biosynthesis
GO:0005789; integral to endoplasmic reticulum membrane
GO:0005506; iron ion binding
GO:0006623; protein targeting to vacuole
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthetic process
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane" ; primary_name "erg32" ; product "C-5 sterol desaturase Erg32" ; EC_number "1.14.21.6" ;
chromosome2 GeneDB CDS 1324475 1325464 . - . mRNA SPBC27B12.03c ; colour "2" ;
chromosome2 GeneDB misc_feature 1324475 1324773 . - . misc_feature unknown_996 ; note "see SPBC27B12.03C for complete CDS" ;
chromosome2 GeneDB 5'-UTR 1325463 1325733 . - . mRNA SPBC27B12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.03c" ; systematic_id "SPBC27B12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1326119 1326138 . - . mRNA SPBC27B12.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.04c" ; systematic_id "SPBC27B12.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1326139 1328592 . - . mRNA SPBC27B12.04c ; db_xref "SPD:33/33H01" ; systematic_id "SPBC27B12.04c" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL127W; date=19700101 ||| term=human FAM40A and FAM40B ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0022402; cell cycle process
GO:0007165; signal transduction" ; gene "SPBC27B12.04c" ; product "conserved eukaryotic protein implicated in cell cycle regulation" ;
chromosome2 GeneDB CDS 1326139 1328592 . - . mRNA SPBC27B12.04c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 1328591 1328650 . - . mRNA SPBC27B12.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.04c" ; systematic_id "SPBC27B12.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1328758 1329203 . + . mRNA SPBC27B12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.05" ; systematic_id "SPBC27B12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1329046 1329760 . - . misc_RNA SPNCRNA.15 ; Alias "prl15" ; db_xref "PMID:12597277 ||| EMBL:AB084827" ; systematic_id "SPNCRNA.15" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl15" ; gene "prl15" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB CDS_parts 1329204 1330607 . + . mRNA SPBC27B12.05 ; db_xref "SPD:33/33A01" ; systematic_id "SPBC27B12.05" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20080108 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20090927 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; gene "SPBC27B12.05" ; product "WD repeat protein" ; note "additional C terminal exon to D1022301" ;
chromosome2 GeneDB CDS 1329204 1329415 . + . mRNA SPBC27B12.05 ; colour "10" ;
chromosome2 GeneDB CDS 1329458 1329555 . + . mRNA SPBC27B12.05 ; colour "10" ;
chromosome2 GeneDB CDS 1329597 1329720 . + . mRNA SPBC27B12.05 ; colour "10" ;
chromosome2 GeneDB CDS 1329765 1329984 . + . mRNA SPBC27B12.05 ; colour "10" ;
chromosome2 GeneDB CDS 1330039 1330467 . + . mRNA SPBC27B12.05 ; colour "10" ;
chromosome2 GeneDB CDS 1330515 1330607 . + . mRNA SPBC27B12.05 ; colour "10" ;
chromosome2 GeneDB misc_feature 1329416 1329421 . + . misc_feature unknown_997 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1329443 1329457 . + . misc_feature unknown_998 ; colour "6" ; note "ctaattgtaattcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1329556 1329561 . + . misc_feature unknown_999 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1329584 1329596 . + . misc_feature unknown_1000 ; colour "6" ; note "ctaatgattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1329721 1329726 . + . misc_feature unknown_1001 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1329753 1329764 . + . misc_feature unknown_1002 ; colour "6" ; note "ctaattactaactttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1329985 1329990 . + . misc_feature unknown_1003 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1330026 1330038 . + . misc_feature unknown_1004 ; colour "6" ; note "ttaacatacttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1330468 1330473 . + . misc_feature unknown_1005 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1330496 1330514 . + . misc_feature unknown_1006 ; colour "6" ; note "ctaactggtgatttcacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1330608 1330738 . + . mRNA SPBC27B12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.05" ; systematic_id "SPBC27B12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1331066 1333822 . + . mRNA SPBC27B12.06 ; systematic_id "SPBC27B12.06" ; colour "7" ; gene "gpi13 ||| SPBC27B12.06" ; Alias "gpi13" ; db_xref "SPD:33/33H11" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0005783; endoplasmic reticulum
GO:0051377; mannose-ethanolamine phosphotransferase activity" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gpi13" ; product "pig-O (predicted)" ;
chromosome2 GeneDB CDS 1331066 1333822 . + . mRNA SPBC27B12.06 ; colour "7" ;
chromosome2 GeneDB CDS_parts 1334112 1335162 . + . mRNA SPBC27B12.07 ; systematic_id "SPBC27B12.07" ; colour "10" ; gene "SPBC27B12.07" ; note "additional C terminal exon TR:D1022299" ; db_xref "SPD:32/32D05" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR283W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1334112 1334495 . + . mRNA SPBC27B12.07 ; colour "10" ;
chromosome2 GeneDB CDS 1334607 1334931 . + . mRNA SPBC27B12.07 ; colour "10" ;
chromosome2 GeneDB CDS 1334999 1335162 . + . mRNA SPBC27B12.07 ; colour "10" ;
chromosome2 GeneDB misc_feature 1334496 1334501 . + . misc_feature unknown_1007 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1334594 1334606 . + . misc_feature unknown_1008 ; colour "6" ; note "ctaacttgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1334932 1334937 . + . misc_feature unknown_1009 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1334977 1334998 . + . misc_feature unknown_1010 ; colour "6" ; note "ttaatttccttttctttttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1335163 1335520 . + . mRNA SPBC27B12.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.07" ; systematic_id "SPBC27B12.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1335724 1341821 . + . mRNA SPBC27B12.08 ; systematic_id "SPBC27B12.08" ; colour "2" ; gene "sip1 ||| SPBC27B12.08" ; Alias "sip1" ; db_xref "SPD:34/34B08" ; GO "GO:0030139; endocytic vesicle
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006897; endocytosis
GO:0006886; intracellular protein transport
GO:0042147; retrograde transport, endosome to Golgi" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL207C; date=19700101 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, pof Six Interacting Protein; db_xref=PMID:19243310; date=20090421 ||| term=phenotype, septation defects; qualifier=ts; cv=phenotype; db_xref=PMID:19243310; date=20090421 ||| term=phenotype, endocytosis defects; qualifier=ts; cv=phenotype; db_xref=PMID:19243310; date=20090421 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:19243310; date=20090421 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sip1" ; product "Pof6 interacting protein Sip1, predicted AP-1 accessory protein" ;
chromosome2 GeneDB CDS 1335724 1335970 . + . mRNA SPBC27B12.08 ; colour "2" ;
chromosome2 GeneDB CDS 1336015 1336093 . + . mRNA SPBC27B12.08 ; colour "2" ;
chromosome2 GeneDB CDS 1336132 1336180 . + . mRNA SPBC27B12.08 ; colour "2" ;
chromosome2 GeneDB CDS 1336230 1339682 . + . mRNA SPBC27B12.08 ; colour "2" ;
chromosome2 GeneDB CDS 1339723 1340938 . + . mRNA SPBC27B12.08 ; colour "2" ;
chromosome2 GeneDB CDS 1340983 1341142 . + . mRNA SPBC27B12.08 ; colour "2" ;
chromosome2 GeneDB CDS 1341187 1341337 . + . mRNA SPBC27B12.08 ; colour "2" ;
chromosome2 GeneDB CDS 1341377 1341578 . + . mRNA SPBC27B12.08 ; colour "2" ;
chromosome2 GeneDB CDS 1341619 1341821 . + . mRNA SPBC27B12.08 ; colour "2" ;
chromosome2 GeneDB misc_feature 1335971 1335976 . + . misc_feature unknown_1011 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1336001 1336014 . + . misc_feature unknown_1012 ; colour "6" ; note "ttaacaagtattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1336094 1336099 . + . misc_feature unknown_1013 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1336121 1336131 . + . misc_feature unknown_1014 ; colour "6" ; note "ctaaccggtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1336181 1336186 . + . misc_feature unknown_1015 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1336217 1336229 . + . misc_feature unknown_1016 ; colour "6" ; note "ttaaccttaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1339683 1339688 . + . misc_feature unknown_1017 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1339708 1339722 . + . misc_feature unknown_1018 ; colour "6" ; note "ctaacaattttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1340939 1340944 . + . misc_feature unknown_1019 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1340971 1340982 . + . misc_feature unknown_1020 ; colour "6" ; note "ctaactgtctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1341143 1341148 . + . misc_feature unknown_1021 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1341172 1341186 . + . misc_feature unknown_1022 ; colour "6" ; note "ctaaccttaaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1341338 1341343 . + . misc_feature unknown_1023 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1341366 1341376 . + . misc_feature unknown_1024 ; colour "6" ; note "ttaacatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1341579 1341584 . + . misc_feature unknown_1025 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1341608 1341618 . + . misc_feature unknown_1026 ; colour "6" ; note "ctaacttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1341962 1342042 . - . mRNA SPBC27B12.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.09c" ; systematic_id "SPBC27B12.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1342043 1342876 . - . mRNA SPBC27B12.09c ; db_xref "SPD:32/32A01" ; systematic_id "SPBC27B12.09c" ; colour "7" ; GO "GO:0032592; integral to mitochondrial membrane
GO:0005739; mitochondrion
GO:0015230; FAD transmembrane transporter activity
GO:0035350; FAD transmembrane transport
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL134W; date=19700101 ||| term=mitochondrial carrier; date=20070920 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=mitochondrial carrier; date=19700101" ; gene "SPBC27B12.09c" ; product "mitochondrial FAD transporter (predicted)" ;
chromosome2 GeneDB CDS 1342043 1342876 . - . mRNA SPBC27B12.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1342875 1343058 . - . mRNA SPBC27B12.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.09c" ; systematic_id "SPBC27B12.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1343502 1344031 . - . mRNA SPBC27B12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.10c" ; systematic_id "SPBC27B12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1344032 1344237 . - . mRNA SPBC27B12.10c ; systematic_id "SPBC27B12.10c" ; colour "7" ; gene "tom7 ||| SPBC27B12.10c" ; Alias "tom7" ; db_xref "SPD:31/31C02" ; GO "GO:0015450; protein translocase activity
GO:0005198; structural molecule activity
GO:0030150; protein import into mitochondrial matrix
GO:0045040; protein import into mitochondrial outer membrane
GO:0045039; protein import into mitochondrial inner membrane
GO:0005742; mitochondrial outer membrane translocase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL070W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tom7" ; product "mitochondrial TOM complex subunit Tom7 (predicted)" ;
chromosome2 GeneDB CDS 1344032 1344157 . - . mRNA SPBC27B12.10c ; colour "7" ;
chromosome2 GeneDB CDS 1344214 1344237 . - . mRNA SPBC27B12.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 1344158 1344171 . - . misc_feature unknown_1027 ; colour "6" ; note "ctaatttcttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1344208 1344213 . - . misc_feature unknown_1028 ; colour "6" ; note "gtattg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1344236 1344272 . - . mRNA SPBC27B12.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.10c" ; systematic_id "SPBC27B12.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1345112 1345248 . - . mRNA SPBC27B12.11c ; ID "SPBC27B12.11c" ; systematic_id "SPBC27B12.11c" ; note "mRNA from AU010786" ;
chromosome2 GeneDB CDS_parts 1345249 1347465 . - . mRNA SPBC27B12.11c ; db_xref "SPD:33/33F12" ; systematic_id "SPBC27B12.11c" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC27B12.11c" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB CDS 1345249 1347465 . - . mRNA SPBC27B12.11c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1347464 1347951 . - . mRNA SPBC27B12.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.11c" ; systematic_id "SPBC27B12.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1348161 1357244 . - . misc_feature unknown_1029 ; note "nominal overlap with cosmid SPAB4538, EM:AB004538 S. pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 1348287 1348379 . + . mRNA SPBC27B12.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.14" ; systematic_id "SPBC27B12.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1348380 1348863 . + . mRNA SPBC27B12.14 ; db_xref "SPD:31/31E01" ; systematic_id "SPBC27B12.14" ; controlled_curation "term=orthologous to S. cerevisiae YGR174C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0032592; integral to mitochondrial membrane
GO:0033108; mitochondrial respiratory chain complex assembly" ; gene "SPBC27B12.14" ; product "mitochondrial membrane protein complex assembly protein (predicted)" ; note "truncated C-terminal" ;
chromosome2 GeneDB CDS 1348380 1348416 . + . mRNA SPBC27B12.14 ; colour "7" ;
chromosome2 GeneDB CDS 1348504 1348622 . + . mRNA SPBC27B12.14 ; colour "7" ;
chromosome2 GeneDB CDS 1348801 1348863 . + . mRNA SPBC27B12.14 ; colour "7" ;
chromosome2 GeneDB misc_feature 1348417 1348422 . + . misc_feature unknown_1030 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1348484 1348503 . + . misc_feature unknown_1031 ; colour "6" ; note "cttaccagtatataaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1348623 1348628 . + . misc_feature unknown_1032 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1348787 1348800 . + . misc_feature unknown_1033 ; colour "6" ; note "ctgactttgagtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1348864 1349220 . + . mRNA SPBC27B12.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.14" ; systematic_id "SPBC27B12.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1350859 1351330 . - . mRNA SPBC27B12.12c ; ID "SPBC27B12.12c" ; systematic_id "SPBC27B12.12c" ; note "mRNA from AU008545" ;
chromosome2 GeneDB CDS_parts 1351331 1353742 . - . mRNA SPBC27B12.12c ; db_xref "SPD:33/33G12" ; systematic_id "SPBC27B12.12c" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0015095; magnesium ion transporter activity
GO:0015693; magnesium ion transport
GO:0010045; response to nickel ion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL064W and YOL130W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC27B12.12c" ; product "CorA family magnesium ion transporter (predicted)" ;
chromosome2 GeneDB CDS 1351331 1353742 . - . mRNA SPBC27B12.12c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1353741 1354228 . - . mRNA SPBC27B12.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.12c" ; systematic_id "SPBC27B12.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1356208 1356316 . + . mRNA SPBC27B12.13 ; ID "SPBC27B12.13" ; systematic_id "SPBC27B12.13" ; note "mRNA from AU010909" ;
chromosome2 GeneDB CDS_parts 1356317 1357351 . + . mRNA SPBC27B12.13 ; systematic_id "SPBC27B12.13" ; colour "7" ; gene "tom40 ||| SPBC27B12.13 ||| SPBC8D2.22" ; Alias "tom40" ; db_xref "SPD:41/41H03" ; synonym "SPBC8D2.22" ; GO "GO:0015450; protein translocase activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0005742; mitochondrial outer membrane translocase complex
GO:0030150; protein import into mitochondrial matrix" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR203W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tom40" ; product "mitochondrial TOM complex subunit Tom40 (predicted)" ;
chromosome2 GeneDB CDS 1356317 1357351 . + . mRNA SPBC27B12.13 ; colour "7" ;
chromosome2 GeneDB misc_feature 1357172 1357244 . + . misc_feature unknown_1034 ; note "nominal overlap with cosmid SPBC27B12 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 1357309 1357402 . + . misc_feature unknown_1035 ; note "nominal overlap between cosmid SPBC8D2 and cosmid SPBC568" ;
chromosome2 GeneDB 3'-UTR 1357352 1357850 . + . mRNA SPBC27B12.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27B12.13" ; systematic_id "SPBC27B12.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1358677 1358691 . + . mRNA SPBC8D2.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.01" ; systematic_id "SPBC8D2.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1358692 1360439 . + . mRNA SPBC8D2.01 ; systematic_id "SPBC8D2.01" ; colour "7" ; gene "gsk31 ||| SPBC8D2.01" ; Alias "gsk31" ; obsolete_name "pi064" ; db_xref "SPD:33/33D04" ; GO "GO:0005737; cytoplasm
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=glycogen synthase kinase 3 (GSK- 3) subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YMR139W and YDL079C and YNL307C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gsk31" ; product "serine/threonine protein kinase Gsk31 (predicted)" ;
chromosome2 GeneDB CDS 1358692 1358698 . + . mRNA SPBC8D2.01 ; colour "7" ;
chromosome2 GeneDB CDS 1358744 1358925 . + . mRNA SPBC8D2.01 ; colour "7" ;
chromosome2 GeneDB CDS 1359483 1360439 . + . mRNA SPBC8D2.01 ; colour "7" ;
chromosome2 GeneDB intron 1358699 1358743 . + . intron SPBC8D2.01 ; Alias "gsk31" ; db_xref "EMBL:D89120" ; systematic_id "SPBC8D2.01" ; primary_name "gsk31" ; note "confirmed by mRNA" ;
chromosome2 GeneDB 3'-UTR 1360440 1360566 . + . mRNA SPBC8D2.01 ; Alias "gsk31" ; ID "SPBC8D2.01" ; db_xref "EMBL:D89120" ; systematic_id "SPBC8D2.01" ; primary_name "gsk31" ;
chromosome2 GeneDB 3'-UTR 1361041 1361215 . - . mRNA SPBC8D2.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.02c" ; systematic_id "SPBC8D2.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1361216 1361936 . - . mRNA SPBC8D2.02c ; db_xref "SPD:31/31H03" ; systematic_id "SPBC8D2.02c" ; colour "7" ; GO "GO:0006623; protein targeting to vacuole
GO:0000329; vacuolar membrane (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL129W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC8D2.02c" ; product "vacuolar sorting protein Vps68 (predicted)" ;
chromosome2 GeneDB CDS 1361216 1361510 . - . mRNA SPBC8D2.02c ; colour "7" ;
chromosome2 GeneDB CDS 1361664 1361788 . - . mRNA SPBC8D2.02c ; colour "7" ;
chromosome2 GeneDB CDS 1361844 1361936 . - . mRNA SPBC8D2.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1361935 1362146 . - . mRNA SPBC8D2.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.02c" ; systematic_id "SPBC8D2.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1364292 1364511 . - . mRNA SPBC8D2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.03c" ; systematic_id "SPBC8D2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1364512 1364823 . - . mRNA SPBC8D2.03c ; systematic_id "SPBC8D2.03c" ; colour "2" ; gene "hhf2 ||| ams3 ||| h4.2 ||| SPBC8D2.03c" ; Alias "hhf2" ; db_xref "SPD:31/31C07" ; synonym "ams3 ||| h4.2" ; GO "GO:0003677; DNA binding
GO:0006334; nucleosome assembly
GO:0000788; nuclear nucleosome" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR009C and YNL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human HIST1H4I ortholog; date=20100217 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K20; cv=pt_mod; date=20100311" ; primary_name "hhf2" ; product "histone H4 h4.2" ;
chromosome2 GeneDB CDS 1364512 1364823 . - . mRNA SPBC8D2.03c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1364822 1364954 . - . mRNA SPBC8D2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.03c" ; systematic_id "SPBC8D2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1365158 1365568 . + . mRNA SPBC8D2.04 ; systematic_id "SPBC8D2.04" ; colour "2" ; db_xref "SPD:31/31D06" ; Alias "hht2" ; synonym "h3.2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR010W and YNL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; residue=S10; cv=pt_mod; date=20090213 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K4|K9; cv=pt_mod; date=20100311 ||| term=target of Hrk1; qualifier=phosphorylated_by; db_xref=PMID:20929775; date=20101115" ; GO "GO:0030702; chromatin silencing at centromere
GO:0003677; DNA binding
GO:0006334; nucleosome assembly
GO:0000788; nuclear nucleosome
GO:0030702; chromatin silencing at centromere
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0030702; chromatin silencing at centromere
GO:0032015; regulation of Ran protein signal transduction
GO:0005515; protein binding" ; primary_name "hht2" ; product "histone H3 h3.2" ;
chromosome2 GeneDB CDS 1365158 1365568 . + . mRNA SPBC8D2.04 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1365569 1365715 . + . mRNA SPBC8D2.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.04" ; systematic_id "SPBC8D2.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1366216 1368793 . - . mRNA SPBC8D2.05c ; systematic_id "SPBC8D2.05c" ; colour "2" ; gene "sfi1 ||| SPBC8D2.05c" ; Alias "sfi1" ; db_xref "SPD:33/33H04" ; GO "GO:0030474; spindle pole body duplication
GO:0005816; spindle pole body" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=centrin binding repeats; db_xref=PMID:14504268; date=19700101 ||| term=orthologous to S. cerevisiae YLL003W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "sfi1" ; product "spindle pole body protein Sfi1" ;
chromosome2 GeneDB CDS 1366216 1368668 . - . mRNA SPBC8D2.05c ; colour "2" ;
chromosome2 GeneDB CDS 1368724 1368793 . - . mRNA SPBC8D2.05c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1369128 1369157 . + . mRNA SPBC8D2.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.06" ; systematic_id "SPBC8D2.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1369158 1372352 . + . mRNA SPBC8D2.06 ; systematic_id "SPBC8D2.06" ; colour "7" ; gene "SPBC8D2.06 ||| irs1" ; Alias "irs1" ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:48/48A03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL076C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005829; cytosol
GO:0005524; ATP binding
GO:0004822; isoleucine-tRNA ligase activity
GO:0006428; isoleucyl-tRNA aminoacylation" ; primary_name "irs1" ; product "cytoplasmic isoleucine-tRNA ligase Irs1 (predicted)" ; EC_number "6.1.1.5" ;
chromosome2 GeneDB CDS 1369158 1372352 . + . mRNA SPBC8D2.06 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1372353 1372426 . + . mRNA SPBC8D2.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.06" ; systematic_id "SPBC8D2.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1372591 1372609 . - . mRNA SPBC8D2.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.07c" ; systematic_id "SPBC8D2.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1372610 1374935 . - . mRNA SPBC8D2.07c ; systematic_id "SPBC8D2.07c" ; colour "7" ; gene "sfc9 ||| SPBC8D2.07c" ; Alias "sfc9" ; obsolete_name "SPBC8D2.08c" ; db_xref "SPD:39/39F11" ; GO "GO:0000127; transcription factor TFIIIC complex
GO:0006383; transcription from RNA polymerase III promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=zinc finger protein; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090729 ||| term=human GTF3C4 ortholog; date=20101021" ; primary_name "sfc9" ; product "transcription factor TFIIIC complex subunit Sfc9 (predicted)" ;
chromosome2 GeneDB CDS 1372610 1374338 . - . mRNA SPBC8D2.07c ; colour "7" ;
chromosome2 GeneDB CDS 1374538 1374625 . - . mRNA SPBC8D2.07c ; colour "7" ;
chromosome2 GeneDB CDS 1374684 1374780 . - . mRNA SPBC8D2.07c ; colour "7" ;
chromosome2 GeneDB CDS 1374828 1374935 . - . mRNA SPBC8D2.07c ; colour "7" ;
chromosome2 GeneDB CDS_parts 1375313 1375721 . - . mRNA SPBC8D2.09c ; systematic_id "SPBC8D2.09c" ; colour "7" ; gene "SPBC8D2.09c" ; Alias "msl1" ; db_xref "SPD:31/31D05" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0030620; U2 snRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR009W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "msl1" ; product "U2 snRNP-associated protein Msl1 (predicted)" ; reserved_name "msl1" ;
chromosome2 GeneDB CDS 1375313 1375420 . - . mRNA SPBC8D2.09c ; colour "7" ;
chromosome2 GeneDB CDS 1375494 1375721 . - . mRNA SPBC8D2.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1375720 1375725 . - . mRNA SPBC8D2.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.09c" ; systematic_id "SPBC8D2.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1375951 1376340 . - . mRNA SPBC8D2.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.10c" ; systematic_id "SPBC8D2.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1376341 1378365 . - . mRNA SPBC8D2.10c ; systematic_id "SPBC8D2.10c" ; colour "2" ; gene "rmt3 ||| prmt3 ||| SPBC8D2.10c" ; Alias "rmt3" ; db_xref "SPD:33/33F05" ; synonym "rmt3" ; GO "GO:0005737; cytoplasm
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0008168; methyltransferase activity
GO:0005515; protein binding
GO:0016274; protein-arginine N-methyltransferase activity
GO:0043022; ribosome binding
GO:0019919; peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:15175657; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; qualifier=inferred from context; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16478994; date=20090110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Rps2; db_xref=PMID:15175657; date=20100825 ||| term=human PRMT3 ortholog; date=20100908" ; primary_name "rmt3" ; product "type I ribosomal protein arginine N- methyltransferase Rmt3" ; EC_number "2.1.1.-" ;
chromosome2 GeneDB CDS 1376341 1377734 . - . mRNA SPBC8D2.10c ; colour "2" ;
chromosome2 GeneDB CDS 1377814 1377909 . - . mRNA SPBC8D2.10c ; colour "2" ;
chromosome2 GeneDB CDS 1378224 1378365 . - . mRNA SPBC8D2.10c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1378393 1378448 . + . mRNA SPBC8D2.23 ; db_xref "PMID:21270388" ; systematic_id "SPBC8D2.23" ;
chromosome2 GeneDB CDS_parts 1378510 1378770 . + . mRNA SPBC8D2.23 ; Alias "new15" ; systematic_id "SPBC8D2.23" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0032543; mitochondrion translation
GO:0005671; mitochondrial ribosome" ; controlled_curation "term=orthologous to S. cerevisiae YNL122C; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "new15" ; gene "SPBC8D2.23" ; product "mitochondrial protein, ribosomal subunit L35 related" ;
chromosome2 GeneDB CDS 1378510 1378770 . + . mRNA SPBC8D2.23 ; colour "7" ;
chromosome2 GeneDB CDS_parts 1379592 1379960 . + . mRNA SPBC8D2.11 ; obsolete_name "pI054" ; db_xref "SPD:31/31C10" ; systematic_id "SPBC8D2.11" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC8D2.11" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1379592 1379960 . + . mRNA SPBC8D2.11 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1379961 1380127 . + . mRNA SPBC8D2.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.11" ; systematic_id "SPBC8D2.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1380125 1380297 . - . mRNA SPBC8D2.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.12c" ; systematic_id "SPBC8D2.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1380298 1381599 . - . mRNA SPBC8D2.12c ; systematic_id "SPBC8D2.12c" ; colour "7" ; gene "SPBC8D2.12c" ; obsolete_name "pI053" ; db_xref "SPD:32/32G10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Leigh syndrome; date=20100720 ||| term=disease associated, neurological disorders; date=20100720" ; GO "GO:0005739; mitochondrion" ; product "mitochondrial translational activator of cytochrome C oxidase I (predicted)" ;
chromosome2 GeneDB CDS 1380298 1381015 . - . mRNA SPBC8D2.12c ; colour "7" ;
chromosome2 GeneDB CDS 1381080 1381143 . - . mRNA SPBC8D2.12c ; colour "7" ;
chromosome2 GeneDB CDS 1381500 1381599 . - . mRNA SPBC8D2.12c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1381598 1381611 . - . mRNA SPBC8D2.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.12c" ; systematic_id "SPBC8D2.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1382124 1383706 . + . mRNA SPBC8D2.13 ; systematic_id "SPBC8D2.13" ; colour "7" ; gene "shq1 ||| SPBC8D2.13" ; Alias "shq1" ; obsolete_name "pI052" ; db_xref "SPD:33/33C02" ; GO "GO:0005730; nucleolus
GO:0000493; box H/ACA snoRNP assembly
GO:0006396; RNA processing" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL104C; date=19700101 ||| term=CS domain; date=20071105 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "shq1" ; product "box H/ACA snoRNP assembly protein Shq1 (predicted)" ;
chromosome2 GeneDB CDS 1382124 1382198 . + . mRNA SPBC8D2.13 ; colour "7" ;
chromosome2 GeneDB CDS 1382241 1382308 . + . mRNA SPBC8D2.13 ; colour "7" ;
chromosome2 GeneDB CDS 1382398 1382725 . + . mRNA SPBC8D2.13 ; colour "7" ;
chromosome2 GeneDB CDS 1382771 1383507 . + . mRNA SPBC8D2.13 ; colour "7" ;
chromosome2 GeneDB CDS 1383559 1383706 . + . mRNA SPBC8D2.13 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1383541 1384007 . - . mRNA SPBC8D2.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.14c" ; systematic_id "SPBC8D2.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1383707 1383867 . + . mRNA SPBC8D2.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.13" ; systematic_id "SPBC8D2.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1384008 1385028 . - . mRNA SPBC8D2.14c ; systematic_id "SPBC8D2.14c" ; colour "7" ; gene "sed5 ||| SPBC8D2.14c" ; Alias "sed5" ; db_xref "SPD:32/32C11" ; GO "GO:0005484; SNAP receptor activity
GO:0016192; vesicle-mediated transport
GO:0005801; Golgi cis face" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sed5" ; product "SNARE Sed5 (predicted)" ;
chromosome2 GeneDB CDS 1384008 1384738 . - . mRNA SPBC8D2.14c ; colour "7" ;
chromosome2 GeneDB CDS 1384830 1385028 . - . mRNA SPBC8D2.14c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1385027 1385081 . - . mRNA SPBC8D2.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.14c" ; systematic_id "SPBC8D2.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1385519 1386025 . + . misc_RNA SPNCRNA.347 ; db_xref "PMID:18488015" ; synonym "SPNG1390" ; systematic_id "SPNCRNA.347" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 1386290 1386297 . + . mRNA SPBC8D2.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.15" ; systematic_id "SPBC8D2.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1386298 1387451 . + . mRNA SPBC8D2.15 ; systematic_id "SPBC8D2.15" ; colour "7" ; gene "SPBC8D2.15" ; Alias "lip5" ; db_xref "SPD:32/32E10" ; GO "GO:0016992; lipoate synthase activity
GO:0016992; lipoic acid synthase activity
GO:0005739; mitochondrion
GO:0009107; lipoate biosynthesis
GO:0009249; protein lipoylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR196C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lip5" ; product "mitochondrial lipoic acid synthetase Lip5 (predicted)" ;
chromosome2 GeneDB CDS 1386298 1386345 . + . mRNA SPBC8D2.15 ; colour "7" ;
chromosome2 GeneDB CDS 1386387 1387451 . + . mRNA SPBC8D2.15 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1387452 1387612 . + . mRNA SPBC8D2.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.15" ; systematic_id "SPBC8D2.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1387558 1387746 . - . mRNA SPBC8D2.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.16c" ; systematic_id "SPBC8D2.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1387747 1388737 . - . mRNA SPBC8D2.16c ; db_xref "SPD:32/32C06" ; systematic_id "SPBC8D2.16c" ; colour "10" ; GO "GO:0005634; nucleus
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR310C and YGR283C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c9orf114 ortholog; date=20100727" ; gene "SPBC8D2.16c" ; product "DUF171 family protein" ;
chromosome2 GeneDB CDS 1387747 1388568 . - . mRNA SPBC8D2.16c ; colour "10" ;
chromosome2 GeneDB CDS 1388612 1388737 . - . mRNA SPBC8D2.16c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 1388736 1389152 . - . mRNA SPBC8D2.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.16c" ; systematic_id "SPBC8D2.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1390183 1391222 . + . mRNA SPBC8D2.17 ; db_xref "SPD:32/32D07" ; systematic_id "SPBC8D2.17" ; colour "7" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0042125; protein amino acid galactosylation" ; gene "SPBC8D2.17" ; product "alpha-1,2-galactosyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB CDS 1390183 1391093 . + . mRNA SPBC8D2.17 ; colour "7" ;
chromosome2 GeneDB CDS 1391147 1391222 . + . mRNA SPBC8D2.17 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1391456 1391666 . - . mRNA SPBC8D2.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.18c" ; systematic_id "SPBC8D2.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1391667 1392968 . - . mRNA SPBC8D2.18c ; systematic_id "SPBC8D2.18c" ; colour "7" ; gene "SPBC8D2.18c" ; note "This gene is not the gene described in Abe and Shimoda (2000), Genetics 154 1497-1508. They describe it as ORF SPBC8D2.18c, and as a kinase homologous to S. cerevisiae IME2 and S. pombe pit1.mde3 but the gene described in this paper corresponds to SPC8D2.19" ; db_xref "SPD:32/32G11" ; GO "GO:0004013; adenosylhomocysteinase activity
GO:0006555; methionine metabolism
GO:0016259; selenocysteine metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "adenosylhomocysteinase (predicted)" ; EC_number "3.3.1.1" ;
chromosome2 GeneDB CDS 1391667 1392968 . - . mRNA SPBC8D2.18c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1392969 1393012 . - . mRNA SPBC8D2.18c ; ID "SPBC8D2.18c" ; systematic_id "SPBC8D2.18c" ; note "mRNA from AU007839" ;
chromosome2 GeneDB CDS_parts 1393454 1395312 . + . mRNA SPBC8D2.19 ; systematic_id "SPBC8D2.19" ; colour "2" ; gene "mde3 ||| SPBC8D2.19" ; Alias "mde3" ; db_xref "SPD:33/33E07" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0030437; regulation of ascospore formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL106W; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10747048; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mde3" ; product "serine/threonine protein kinase, meiotic Mde3" ;
chromosome2 GeneDB CDS 1393454 1393600 . + . mRNA SPBC8D2.19 ; colour "2" ;
chromosome2 GeneDB CDS 1393647 1393721 . + . mRNA SPBC8D2.19 ; colour "2" ;
chromosome2 GeneDB CDS 1393855 1395312 . + . mRNA SPBC8D2.19 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1393547 1395833 . - . mRNA SPBC8D2.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.20c" ; systematic_id "SPBC8D2.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1395834 1399508 . - . mRNA SPBC8D2.20c ; systematic_id "SPBC8D2.20c" ; colour "2" ; gene "sec31 ||| SPBC8D2.20c" ; Alias "sec31" ; db_xref "SPD:34/34A10" ; GO "GO:0030127; COPII vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0006998; nuclear membrane organization and biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL195W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human LCX ortholog; date=20100217" ; primary_name "sec31" ; product "COPII-coated vesicle component Sec31 (predicted)" ;
chromosome2 GeneDB CDS 1395834 1399508 . - . mRNA SPBC8D2.20c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1399507 1399598 . - . mRNA SPBC8D2.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8D2.20c" ; systematic_id "SPBC8D2.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1399818 1400417 . - . mRNA SPBC17A3.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.01c" ; systematic_id "SPBC17A3.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1400325 1401065 . + . misc_feature unknown_1036 ; note "nominal overlap with cosmid SPBC8D2, EM:AL022072 S.pombe chromosome 2" ;
chromosome2 GeneDB CDS_parts 1400418 1401776 . - . mRNA SPBC17A3.01c ; systematic_id "SPBC17A3.01c" ; colour "7" ; gene "SPBC8D2.21c ||| SPBC17A3.01c ||| tim50" ; Alias "tim50" ; obsolete_name "pi044" ; db_xref "SPD:32/32H07" ; synonym "SPBC8D2.21c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030150; protein import into mitochondrial matrix
GO:0005744; mitochondrial inner membrane presequence translocase complex
GO:0016021; integral to membrane
GO:0015450; protein translocase activity" ; primary_name "tim50" ; product "TIM23 translocase complex subunit Tim50 (predicted)" ;
chromosome2 GeneDB CDS 1400418 1401776 . - . mRNA SPBC17A3.01c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1401775 1401802 . - . mRNA SPBC17A3.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.01c" ; systematic_id "SPBC17A3.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 1402444 1402541 . - . tRNA SPBTRNALEU.05 ; systematic_id "SPBTRNALEU.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033411; TAA codon-amino acid adaptor activity" ; gene "SPBTRNALEU.05" ; product "tRNA Leucine" ; note "tRNA Leu anticodon TAA, Cove score 42.88" ;
chromosome2 GeneDB intron 1402488 1402503 . - . intron unknown_1037 ; note "intron tRNA Leu anticodon TAA" ;
chromosome2 GeneDB 5'-UTR 1403233 1403246 . + . mRNA SPBC17A3.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.02" ; systematic_id "SPBC17A3.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1403247 1403975 . + . mRNA SPBC17A3.02 ; db_xref "SPD:08/08F12" ; systematic_id "SPBC17A3.02" ; controlled_curation "term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL087C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPBC17A3.02" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1403247 1403313 . + . mRNA SPBC17A3.02 ; colour "10" ;
chromosome2 GeneDB CDS 1403355 1403369 . + . mRNA SPBC17A3.02 ; colour "10" ;
chromosome2 GeneDB CDS 1403418 1403511 . + . mRNA SPBC17A3.02 ; colour "10" ;
chromosome2 GeneDB CDS 1403571 1403590 . + . mRNA SPBC17A3.02 ; colour "10" ;
chromosome2 GeneDB CDS 1403812 1403975 . + . mRNA SPBC17A3.02 ; colour "10" ;
chromosome2 GeneDB misc_feature 1403314 1403319 . + . misc_feature unknown_1038 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1403384 1403399 . + . misc_feature unknown_1039 ; colour "6" ; note "ttaattcagtatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1403512 1403517 . + . misc_feature unknown_1040 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1403555 1403570 . + . misc_feature unknown_1041 ; colour "6" ; note "ctaattactttttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1403591 1403596 . + . misc_feature unknown_1042 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1403799 1403811 . + . misc_feature unknown_1043 ; colour "6" ; note "cttacgaatatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1403976 1404003 . + . mRNA SPBC17A3.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.02" ; systematic_id "SPBC17A3.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1404001 1404359 . - . mRNA SPBC17A3.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.03c" ; systematic_id "SPBC17A3.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1404360 1405394 . - . mRNA SPBC17A3.03c ; systematic_id "SPBC17A3.03c" ; colour "7" ; gene "SPBC17A3.03c" ; obsolete_name "pi043" ; db_xref "SPD:40/40C05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL032W and YNL099C and YNL056W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0006470; protein amino acid dephosphorylation
GO:0004725; protein tyrosine phosphatase activity" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome2 GeneDB CDS 1404360 1404567 . - . mRNA SPBC17A3.03c ; colour "7" ;
chromosome2 GeneDB CDS 1404619 1404695 . - . mRNA SPBC17A3.03c ; colour "7" ;
chromosome2 GeneDB CDS 1404757 1404842 . - . mRNA SPBC17A3.03c ; colour "7" ;
chromosome2 GeneDB CDS 1404974 1405394 . - . mRNA SPBC17A3.03c ; colour "7" ;
chromosome2 GeneDB misc_feature 1404568 1404580 . - . misc_feature unknown_1044 ; colour "6" ; note "ttaacctataaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1404613 1404618 . - . misc_feature unknown_1045 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1404696 1404711 . - . misc_feature unknown_1046 ; colour "6" ; note "ctaacgattcattaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1404751 1404756 . - . misc_feature unknown_1047 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1404843 1404858 . - . misc_feature unknown_1048 ; colour "6" ; note "ctaacccgcttgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1404968 1404973 . - . misc_feature unknown_1049 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1405393 1405704 . - . mRNA SPBC17A3.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.03c" ; systematic_id "SPBC17A3.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB rRNA 1406385 1406824 . + . rRNA SPRRNA.32 ; systematic_id "SPRRNA.32" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.32" ; product "5S rRNA" ;
chromosome2 GeneDB 3'-UTR 1407131 1407407 . - . mRNA SPBC17A3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.04c" ; systematic_id "SPBC17A3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1407408 1409883 . - . mRNA SPBC17A3.04c ; systematic_id "SPBC17A3.04c" ; colour "7" ; gene "SPBC17A3.04c ||| mrs1 ||| mes1 ||| rar1" ; note "added name rar1 to remove conflicts, mrs1 and mes1 are already implemented as primary names for other genes" ; Alias "rar1" ; obsolete_name "pi042" ; db_xref "KEGG:MAP00271; ||| KEGG:MAP00450; ||| KEGG:MAP00970; ||| SPD:40/40H09" ; synonym "mrs1 ||| mes1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR264C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004825; methionine-tRNA ligase activity
GO:0006431; methionyl-tRNA aminoacylation" ; primary_name "rar1" ; product "cytoplasmic methionine-tRNA ligase Mrs1 (predicted)" ; EC_number "6.1.1.10" ;
chromosome2 GeneDB CDS 1407408 1409559 . - . mRNA SPBC17A3.04c ; colour "7" ;
chromosome2 GeneDB CDS 1409621 1409699 . - . mRNA SPBC17A3.04c ; colour "7" ;
chromosome2 GeneDB CDS 1409766 1409883 . - . mRNA SPBC17A3.04c ; colour "7" ;
chromosome2 GeneDB misc_feature 1409560 1409570 . - . misc_feature unknown_1050 ; colour "6" ; note "ttgatatacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1409615 1409620 . - . misc_feature unknown_1051 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1409700 1409713 . - . misc_feature unknown_1052 ; colour "6" ; note "ctaacgcttcacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1409760 1409765 . - . misc_feature unknown_1053 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1409882 1409885 . - . mRNA SPBC17A3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.04c" ; systematic_id "SPBC17A3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1410872 1411361 . - . mRNA SPBC17A3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.05c" ; systematic_id "SPBC17A3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1411362 1412691 . - . mRNA SPBC17A3.05c ; obsolete_name "pi041" ; db_xref "SPD:32/32H03" ; systematic_id "SPBC17A3.05c" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, similar to S. cerevisiae HLJ1, but has different domain arrangement; cv=warning; date=20100127" ; gene "SPBC17A3.05c" ; product "DNAJ/DUF1977 DNAJB12 homolog (predicted)" ;
chromosome2 GeneDB CDS 1411362 1412107 . - . mRNA SPBC17A3.05c ; colour "7" ;
chromosome2 GeneDB CDS 1412172 1412608 . - . mRNA SPBC17A3.05c ; colour "7" ;
chromosome2 GeneDB CDS 1412663 1412691 . - . mRNA SPBC17A3.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 1412108 1412122 . - . misc_feature unknown_1054 ; colour "6" ; note "ctaacttttttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1412166 1412171 . - . misc_feature unknown_1055 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1412609 1412628 . - . misc_feature unknown_1056 ; colour "6" ; note "ctaacacatgttacgtgtag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1412609 1412662 . - . intron SPBC17A3.05c ; systematic_id "SPBC17A3.05c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1412657 1412662 . - . misc_feature unknown_1057 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1412692 1412747 . - . mRNA SPBC17A3.05c ; ID "SPBC17A3.05c" ; systematic_id "SPBC17A3.05c" ; note "mRNA from AU011096" ;
chromosome2 GeneDB 5'-UTR 1412910 1413054 . + . mRNA SPBC17A3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.06" ; systematic_id "SPBC17A3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1413055 1414047 . + . mRNA SPBC17A3.06 ; systematic_id "SPBC17A3.06" ; colour "7" ; gene "SPBC17A3.06" ; obsolete_name "pi040" ; db_xref "SPD:32/32C07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004725; protein tyrosine phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0000027; ribosomal large subunit assembly" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome2 GeneDB CDS 1413055 1414047 . + . mRNA SPBC17A3.06 ; colour "7" ;
chromosome2 GeneDB CDS_parts 1414496 1415945 . + . mRNA SPBC17A3.07 ; systematic_id "SPBC17A3.07" ; colour "2" ; gene "pgr1 ||| SPBC17A3.07" ; Alias "pgr1" ; obsolete_name "pi039" ; db_xref "SPD:33/33A07" ; GO "GO:0004362; glutathione-disulfide reductase activity
GO:0006749; glutathione metabolism
GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9287302; date=19700101 ||| term=orthologous to S. cerevisiae YPL091W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pgr1" ; product "mitochondrial glutathione reductase Pgr1" ;
chromosome2 GeneDB CDS 1414496 1414547 . + . mRNA SPBC17A3.07 ; colour "2" ;
chromosome2 GeneDB CDS 1414603 1415945 . + . mRNA SPBC17A3.07 ; colour "2" ;
chromosome2 GeneDB misc_feature 1414548 1414553 . + . misc_feature unknown_1058 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1414583 1414602 . + . misc_feature unknown_1059 ; colour "6" ; note "ttaacatttatgaatattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1415946 1415990 . + . mRNA SPBC17A3.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.07" ; systematic_id "SPBC17A3.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1416205 1416264 . + . mRNA SPBC17A3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.08" ; systematic_id "SPBC17A3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1416265 1417560 . + . mRNA SPBC17A3.08 ; systematic_id "SPBC17A3.08" ; colour "7" ; gene "SPBC17A3.08" ; obsolete_name "pi038" ; db_xref "SPD:32/32G09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008296; 3'-5'-exodeoxyribonuclease activity
GO:0006308; DNA catabolic process" ; product "TatD homolog (predicted)" ;
chromosome2 GeneDB CDS 1416265 1416296 . + . mRNA SPBC17A3.08 ; colour "7" ;
chromosome2 GeneDB CDS 1416351 1416544 . + . mRNA SPBC17A3.08 ; colour "7" ;
chromosome2 GeneDB CDS 1416720 1416918 . + . mRNA SPBC17A3.08 ; colour "7" ;
chromosome2 GeneDB CDS 1416984 1417261 . + . mRNA SPBC17A3.08 ; colour "7" ;
chromosome2 GeneDB CDS 1417325 1417560 . + . mRNA SPBC17A3.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 1416297 1416302 . + . misc_feature unknown_1060 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1416332 1416350 . + . misc_feature unknown_1061 ; colour "6" ; note "cttacgatatgagctgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1416545 1416550 . + . misc_feature unknown_1062 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1416706 1416719 . + . misc_feature unknown_1063 ; colour "6" ; note "ctaataaattacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1416919 1416924 . + . misc_feature unknown_1064 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 1416921 1417552 . - . mRNA SPBC17A3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.09c" ; systematic_id "SPBC17A3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1416964 1416983 . + . misc_feature unknown_1065 ; colour "6" ; note "ctaacaaaaaattgaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1417262 1417267 . + . misc_feature unknown_1066 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1417308 1417324 . + . misc_feature unknown_1067 ; colour "6" ; note "ttaacaaatatttgtag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 1417553 1418644 . - . mRNA SPBC17A3.09c ; systematic_id "SPBC17A3.09c" ; colour "7" ; gene "SPBC17A3.09c" ; Alias "aim22" ; obsolete_name "pi037" ; db_xref "SPD:32/32E02" ; GO "GO:0016979; lipoate-protein ligase activity
GO:0009249; protein lipoylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL046W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "aim22" ; product "lipoate-protein ligase A (predicted)" ; EC_number "6.3.4.-" ;
chromosome2 GeneDB CDS 1417553 1418644 . - . mRNA SPBC17A3.09c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1417561 1417863 . + . mRNA SPBC17A3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.08" ; systematic_id "SPBC17A3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1418643 1418796 . - . mRNA SPBC17A3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.09c" ; systematic_id "SPBC17A3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1418685 1418871 . + . mRNA SPBC17A3.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.10" ; systematic_id "SPBC17A3.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1418872 1419850 . + . mRNA SPBC17A3.10 ; systematic_id "SPBC17A3.10" ; colour "7" ; gene "pas4 ||| SPBC17A3.10" ; Alias "pas4" ; obsolete_name "pi036" ; db_xref "SPD:32/32B11" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0007031; peroxisome organization and biogenesis
GO:0005778; peroxisomal membrane" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDR265W; date=19700101 ||| term=disease associated, peroxisomal defects; date=20070627 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pas4" ; product "peroxisomal ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB CDS 1418872 1418908 . + . mRNA SPBC17A3.10 ; colour "7" ;
chromosome2 GeneDB CDS 1418967 1419850 . + . mRNA SPBC17A3.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 1418909 1418914 . + . misc_feature unknown_1068 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1418954 1418966 . + . misc_feature unknown_1069 ; colour "6" ; note "ttaacgaagcaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1419851 1420225 . + . mRNA SPBC17A3.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17A3.10" ; systematic_id "SPBC17A3.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1420160 1421667 . + . misc_feature unknown_1070 ; note "nominal overlap with cosmid c17A3" ;
chromosome2 GeneDB CDS_parts 1420542 1421783 . + . mRNA SPBC691.01 ; systematic_id "SPBC691.01" ; colour "7" ; gene "SPBC691.01" ; obsolete_name "pi035" ; db_xref "SPD:50/50E06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-DHHC type; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL326C and YDR459C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0018345; protein amino acid palmitoylation
GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0042144; vacuole fusion, non-autophagic" ; product "vacuolar membrane palmitoyltransferase (predicted)" ; EC_number "2.3.1.-" ;
chromosome2 GeneDB CDS 1420542 1420671 . + . mRNA SPBC691.01 ; colour "7" ;
chromosome2 GeneDB CDS 1420752 1420802 . + . mRNA SPBC691.01 ; colour "7" ;
chromosome2 GeneDB CDS 1420855 1420950 . + . mRNA SPBC691.01 ; colour "7" ;
chromosome2 GeneDB CDS 1421012 1421168 . + . mRNA SPBC691.01 ; colour "7" ;
chromosome2 GeneDB CDS 1421230 1421391 . + . mRNA SPBC691.01 ; colour "7" ;
chromosome2 GeneDB CDS 1421441 1421783 . + . mRNA SPBC691.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 1420542 1421667 . + . misc_feature unknown_1071 ; note "see c691 for complete CDS" ;
chromosome2 GeneDB misc_feature 1420672 1420677 . + . misc_feature unknown_1072 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1420733 1420751 . + . misc_feature unknown_1073 ; colour "6" ; note "ctaattatattctatacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1420803 1420808 . + . misc_feature unknown_1074 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1420842 1420854 . + . misc_feature unknown_1075 ; colour "6" ; note "ctaacctttaaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1420941 1421872 . - . mRNA SPBC691.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC691.02c" ; systematic_id "SPBC691.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1420951 1420956 . + . misc_feature unknown_1076 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1420992 1421011 . + . misc_feature unknown_1077 ; colour "6" ; note "ctaacatcagtttattctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1421169 1421174 . + . misc_feature unknown_1078 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1421216 1421229 . + . misc_feature unknown_1079 ; colour "6" ; note "ctaattttgatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1421392 1421397 . + . misc_feature unknown_1080 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1421420 1421440 . + . misc_feature unknown_1081 ; colour "6" ; note "ctaacaatattatatcaatag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 1421873 1423909 . - . mRNA SPBC691.02c ; systematic_id "SPBC691.02c" ; colour "7" ; gene "SPBC691.02c" ; obsolete_name "pi034 ||| SPACTOKYO_453.01" ; db_xref "SPD:49/49D03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL145W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005783; endoplasmic reticulum" ; product "RINT1 family protein (predicted)" ;
chromosome2 GeneDB CDS 1421873 1423909 . - . mRNA SPBC691.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1423908 1423967 . - . mRNA SPBC691.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC691.02c" ; systematic_id "SPBC691.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1424290 1424669 . - . mRNA SPBC691.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC691.03c" ; systematic_id "SPBC691.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1424670 1427306 . - . mRNA SPBC691.03c ; systematic_id "SPBC691.03c" ; colour "7" ; gene "apl3 ||| SPBC691.03c" ; Alias "apl3" ; obsolete_name "pi033 ||| SPACTOKYO_453.02c" ; db_xref "SPD:49/49E12" ; GO "GO:0030122; AP-2 adaptor complex
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YBL037W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "apl3" ; product "AP-2 adaptor complex subunit Alp3 (predicted)" ;
chromosome2 GeneDB CDS 1424670 1427306 . - . mRNA SPBC691.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1427305 1427433 . - . mRNA SPBC691.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC691.03c" ; systematic_id "SPBC691.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1427986 1428304 . + . misc_RNA SPNCRNA.348 ; db_xref "PMID:18488015" ; synonym "SPNG1394" ; systematic_id "SPNCRNA.348" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 1428691 1428788 . + . mRNA SPBC691.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC691.04" ; systematic_id "SPBC691.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1428789 1430396 . + . mRNA SPBC691.04 ; systematic_id "SPBC691.04" ; colour "7" ; gene "SPBC691.04" ; obsolete_name "pi031 ||| SPACTOKYO_453.03c" ; db_xref "SPD:49/49A07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDR194C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008380; RNA splicing
GO:0005759; mitochondrial matrix
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding" ; product "mitochondrial ATP-dependent RNA helicase Mss116 (predicted)" ;
chromosome2 GeneDB CDS 1428789 1430396 . + . mRNA SPBC691.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1430397 1430621 . + . mRNA SPBC691.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC691.04" ; systematic_id "SPBC691.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1430567 1430754 . - . mRNA SPBC691.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC691.05c" ; systematic_id "SPBC691.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1430754 1431923 . - . misc_feature unknown_1082 ; note "nominal overlap with plasmid p22H7" ;
chromosome2 GeneDB misc_feature 1430754 1431923 . + . misc_feature unknown_1083 ; note "nominal overlap with cosmid c691" ;
chromosome2 GeneDB CDS_parts 1430755 1432890 . - . mRNA SPBC691.05c ; systematic_id "SPBC691.05c" ; colour "7" ; gene "SPBC691.05c ||| SPBP22H7.01c" ; obsolete_name "pi030 ||| SPACTOKYO_453.04" ; db_xref "SPD:49/49D06" ; synonym "SPBP22H7.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 1430755 1432230 . - . mRNA SPBC691.05c ; colour "7" ;
chromosome2 GeneDB CDS 1432360 1432890 . - . mRNA SPBC691.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 1432231 1432247 . - . misc_feature unknown_1084 ; colour "6" ; note "cttactgtgatatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1432354 1432359 . - . misc_feature unknown_1085 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 1433315 1433411 . - . mRNA SPBP22H7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.02c" ; systematic_id "SPBP22H7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1433412 1435913 . - . mRNA SPBP22H7.02c ; systematic_id "SPBP22H7.02c" ; colour "7" ; gene "SPBP22H7.02c" ; obsolete_name "pi029 ||| SPACTOKYO_453.05c" ; db_xref "SPD:49/49E07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YPR112C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0003723; RNA binding" ; product "RNA-binding protein Mrd1 (predicted)" ;
chromosome2 GeneDB CDS 1433412 1435913 . - . mRNA SPBP22H7.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1435912 1435952 . - . mRNA SPBP22H7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.02c" ; systematic_id "SPBP22H7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1436278 1436823 . + . mRNA SPBP22H7.03 ; obsolete_name "pi028 ||| SPACTOKYO_453.06c ||| SPACTOKYO_453.07" ; db_xref "SPD:41/41D02" ; systematic_id "SPBP22H7.03" ; colour "10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=20090303 ||| term=species distribution, conserved in Fungi; date=20100824" ; gene "SPBP22H7.03" ; product "beta-glucan synthesis-associated protein- related" ;
chromosome2 GeneDB CDS 1436278 1436823 . + . mRNA SPBP22H7.03 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 1436824 1437274 . + . mRNA SPBP22H7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.03" ; systematic_id "SPBP22H7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1438044 1438066 . + . mRNA SPBP22H7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.04" ; systematic_id "SPBP22H7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1438067 1438834 . + . mRNA SPBP22H7.04 ; obsolete_name "pi027 ||| SPACTOKYO_453.08" ; db_xref "SPD:41/41F04" ; systematic_id "SPBP22H7.04" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBP22H7.04" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1438067 1438834 . + . mRNA SPBP22H7.04 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1438593 1438966 . - . mRNA SPBP22H7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.05c" ; systematic_id "SPBP22H7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1438835 1440350 . + . mRNA SPBP22H7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.04" ; systematic_id "SPBP22H7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1438967 1442572 . - . mRNA SPBP22H7.05c ; systematic_id "SPBP22H7.05c" ; colour "7" ; gene "SPBP22H7.05c" ; obsolete_name "pi026 ||| SPACTOKYO_453.08" ; db_xref "SPD:49/49G05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=bromodomain; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YGR270W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016887; ATPase activity
GO:0010552; positive regulation of gene-specific transcription from RNA polymerase II promoter" ; product "ATPase with bromodomain protein (predicted)" ;
chromosome2 GeneDB CDS 1438967 1442572 . - . mRNA SPBP22H7.05c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1442571 1442715 . - . mRNA SPBP22H7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.05c" ; systematic_id "SPBP22H7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1443980 1444564 . + . mRNA SPBP22H7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.06" ; systematic_id "SPBP22H7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1444565 1445673 . + . mRNA SPBP22H7.06 ; systematic_id "SPBP22H7.06" ; colour "7" ; gene "SPBP22H7.06" ; note "uridine kinase PRINTS false positive" ; obsolete_name "pi025 ||| SPACTOKYO_453.09c" ; db_xref "SPD:50/50C07" ; GO "GO:0046495; nicotinamide riboside metabolism
GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0050262; ribosylnicotinamide kinase activity
GO:0034356; NAD biosynthesis via nicotinamide riboside salvage pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL129W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "nicotinamide riboside kinase (predicted)" ;
chromosome2 GeneDB CDS 1444565 1444596 . + . mRNA SPBP22H7.06 ; colour "7" ;
chromosome2 GeneDB CDS 1444651 1444675 . + . mRNA SPBP22H7.06 ; colour "7" ;
chromosome2 GeneDB CDS 1444778 1444846 . + . mRNA SPBP22H7.06 ; colour "7" ;
chromosome2 GeneDB CDS 1445021 1445387 . + . mRNA SPBP22H7.06 ; colour "7" ;
chromosome2 GeneDB CDS 1445474 1445673 . + . mRNA SPBP22H7.06 ; colour "7" ;
chromosome2 GeneDB misc_feature 1444597 1444602 . + . misc_feature unknown_1086 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1444633 1444650 . + . misc_feature unknown_1087 ; colour "6" ; note "ttaacaagaaaaaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1444676 1444681 . + . misc_feature unknown_1088 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1444748 1444777 . + . misc_feature unknown_1089 ; colour "6" ; note "ctaaccaatttctctttcttgttttgacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1444847 1444852 . + . misc_feature unknown_1090 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1445001 1445020 . + . misc_feature unknown_1091 ; colour "6" ; note "ctaactcgtttgttttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1445388 1445393 . + . misc_feature unknown_1092 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1445454 1445473 . + . misc_feature unknown_1093 ; colour "6" ; note "ctaactccaaattgttccag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1445674 1445800 . + . mRNA SPBP22H7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.06" ; systematic_id "SPBP22H7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1446072 1446111 . + . mRNA SPBP22H7.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.07" ; systematic_id "SPBP22H7.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1446112 1447533 . + . mRNA SPBP22H7.07 ; systematic_id "SPBP22H7.07" ; colour "2" ; gene "prp5 ||| cwf1 ||| SPBP22H7.07" ; Alias "prp5" ; obsolete_name "pi024 ||| SPACTOKYO_453.10" ; db_xref "SPD:50/50F11" ; synonym "cwf1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9475017; date=20100727 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL151C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005681; spliceosome complex
GO:0005515; protein binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "prp5" ; product "WD repeat protein Prp5" ;
chromosome2 GeneDB CDS 1446112 1447533 . + . mRNA SPBP22H7.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1447534 1447558 . + . mRNA SPBP22H7.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.07" ; systematic_id "SPBP22H7.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1448002 1448007 . + . mRNA SPBP22H7.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.08" ; systematic_id "SPBP22H7.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1448008 1448499 . + . mRNA SPBP22H7.08 ; systematic_id "SPBP22H7.08" ; colour "7" ; gene "rps1002 ||| rps10-2 ||| rps10B ||| SPBP22H7.08" ; Alias "rps1002" ; obsolete_name "pi023 ||| SPACTOKYO_453.11" ; db_xref "SPD:41/41C07" ; synonym "rps10-2 ||| rps10B" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR293W and YMR230W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0000054; ribosome export from nucleus" ; primary_name "rps1002" ; product "40S ribosomal protein S10 (predicted)" ;
chromosome2 GeneDB CDS 1448008 1448083 . + . mRNA SPBP22H7.08 ; colour "7" ;
chromosome2 GeneDB CDS 1448132 1448499 . + . mRNA SPBP22H7.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 1448084 1448089 . + . misc_feature unknown_1094 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome2 GeneDB intron 1448084 1448131 . + . intron SPBP22H7.08 ; systematic_id "SPBP22H7.08" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1448119 1448131 . + . misc_feature unknown_1095 ; colour "6" ; note "ctaacaagcgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1448500 1448545 . + . mRNA SPBP22H7.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP22H7.08" ; systematic_id "SPBP22H7.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1448815 1450155 . - . mRNA SPBP22H7.09c ; systematic_id "SPBP22H7.09c" ; colour "2" ; gene "mis15 ||| SPBP22H7.09c" ; Alias "mis15" ; obsolete_name "pi022 ||| SPACTOKYO_453.12" ; db_xref "SPD:50/50F02" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0000939; inner kinetochore of condensed chromosome
GO:0031055; chromatin remodeling at centromere
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0031511; Mis6-Sim4 complex
GO:0051382; kinetochore assembly
GO:0005634; nucleus
GO:0000779; condensed chromosome, pericentric region
GO:0034080; DNA replication-independent nucleosome assembly at centromere" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR254W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:15369671; date=20090907 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis15" ; product "kinetochore protein Mis15" ;
chromosome2 GeneDB CDS 1448815 1449603 . - . mRNA SPBP22H7.09c ; colour "2" ;
chromosome2 GeneDB CDS 1449657 1449790 . - . mRNA SPBP22H7.09c ; colour "2" ;
chromosome2 GeneDB CDS 1449849 1450155 . - . mRNA SPBP22H7.09c ; colour "2" ;
chromosome2 GeneDB misc_feature 1449791 1449807 . - . misc_feature unknown_1096 ; colour "6" ; note "ctaatatcaattcacag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1449791 1449848 . - . intron SPBP22H7.09c ; db_xref "PMID:15369671" ; systematic_id "SPBP22H7.09c" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 1449843 1449848 . - . misc_feature unknown_1097 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1450320 1451359 . + . misc_feature unknown_1098 ; note "nominal overlap with c32H8" ;
chromosome2 GeneDB CDS_parts 1450371 1451104 . - . mRNA SPBC32H8.01c ; systematic_id "SPBC32H8.01c" ; colour "10" ; gene "SPBP22H7.10c ||| SPBC32H8.01c" ; Alias "SPBP22H7.10c" ; db_xref "SPD:51/51B11" ; synonym "SPBP22H7.10c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; qualifier=inferred from context; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YER128W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPBP22H7.10c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1450371 1450794 . - . mRNA SPBC32H8.01c ; colour "10" ;
chromosome2 GeneDB CDS 1450887 1450936 . - . mRNA SPBC32H8.01c ; colour "10" ;
chromosome2 GeneDB CDS 1451015 1451104 . - . mRNA SPBC32H8.01c ; colour "10" ;
chromosome2 GeneDB misc_feature 1450795 1450816 . - . misc_feature unknown_1099 ; colour "6" ; note "ttaaccaacaaaataaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1450881 1450886 . - . misc_feature unknown_1100 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1450937 1450960 . - . misc_feature unknown_1101 ; colour "6" ; note "ctaatacactattatcgtttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1451009 1451014 . - . misc_feature unknown_1102 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 1451412 1452186 . - . mRNA SPBC32H8.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.02c" ; systematic_id "SPBC32H8.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1452187 1453434 . - . mRNA SPBC32H8.02c ; systematic_id "SPBC32H8.02c" ; colour "2" ; gene "nep2 ||| SPBC32H8.02c ||| mug120" ; Alias "nep2" ; obsolete_name "SPACTOKYO_453.14c ||| pi021" ; db_xref "SPD:50/50E07" ; synonym "mug120" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YPL020C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=misc, target does not appear to be only cullins; db_xref=PMID:15769255; date=20050321" ; GO "GO:0005737; cytoplasm
GO:0019784; NEDD8-specific protease activity
GO:0000338; protein deneddylation
GO:0016926; protein desumoylation
GO:0016925; protein sumoylation
GO:0006508; proteolysis" ; primary_name "nep2" ; product "NEDD8 protease Nep2" ;
chromosome2 GeneDB CDS 1452187 1453434 . - . mRNA SPBC32H8.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1453433 1454655 . - . mRNA SPBC32H8.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.02c" ; systematic_id "SPBC32H8.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1453435 1457556 . + . misc_feature unknown_1103 ; note "low complexity gene free region" ;
chromosome2 GeneDB misc_feature 1453838 1455400 . + . misc_feature unknown_1104 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1398" ;
chromosome2 GeneDB misc_feature 1455533 1456731 . + . misc_feature unknown_1105 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1399" ;
chromosome2 GeneDB 5'-UTR 1457557 1457663 . + . mRNA SPBC32H8.03 ; ID "SPBC32H8.03" ; systematic_id "SPBC32H8.03" ; note "mRNA from SP29892" ;
chromosome2 GeneDB CDS_parts 1457664 1458563 . + . mRNA SPBC32H8.03 ; systematic_id "SPBC32H8.03" ; colour "2" ; gene "bem46 ||| SPBC32H8.03" ; Alias "bem46" ; obsolete_name "SPACTOKYO_453.15c" ; db_xref "SPD:41/41G05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL320W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "bem46" ; product "esterase/lipase (predicted)" ;
chromosome2 GeneDB CDS 1457664 1458563 . + . mRNA SPBC32H8.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1458564 1458849 . + . mRNA SPBC32H8.03 ; ID "SPBC32H8.03" ; systematic_id "SPBC32H8.03" ; note "mRNA from SP29892" ;
chromosome2 GeneDB 3'-UTR 1459109 1459351 . - . mRNA SPBC32H8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.04c" ; systematic_id "SPBC32H8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1459352 1459984 . - . mRNA SPBC32H8.04c ; systematic_id "SPBC32H8.04c" ; colour "7" ; gene "SPBC32H8.04c" ; obsolete_name "pi019 ||| SPACTOKYO_453.16" ; db_xref "SPD:41/41D11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR339C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=PINc domain; date=20091004" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing" ; product "rRNA processing protein Fcf1 (predicted)" ;
chromosome2 GeneDB CDS 1459352 1459793 . - . mRNA SPBC32H8.04c ; colour "7" ;
chromosome2 GeneDB CDS 1459848 1459984 . - . mRNA SPBC32H8.04c ; colour "7" ;
chromosome2 GeneDB misc_feature 1459794 1459806 . - . misc_feature unknown_1106 ; colour "6" ; note "ctaacccctcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1459842 1459847 . - . misc_feature unknown_1107 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1459983 1460097 . - . mRNA SPBC32H8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.04c" ; systematic_id "SPBC32H8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1460575 1461067 . + . mRNA SPBC32H8.05 ; db_xref "SPD:41/41C10" ; systematic_id "SPBC32H8.05" ; colour "10" ; GO "GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL028C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC32H8.05" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1460575 1460622 . + . mRNA SPBC32H8.05 ; colour "10" ;
chromosome2 GeneDB CDS 1460762 1461067 . + . mRNA SPBC32H8.05 ; colour "10" ;
chromosome2 GeneDB misc_feature 1460623 1460628 . + . misc_feature unknown_1108 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1460747 1460761 . + . misc_feature unknown_1109 ; colour "6" ; note "ctaacaaagtaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1461068 1461302 . + . mRNA SPBC32H8.05 ; ID "SPBC32H8.05" ; systematic_id "SPBC32H8.05" ; note "mRNA from AU012339" ;
chromosome2 GeneDB CDS_parts 1461719 1463083 . + . mRNA SPBC32H8.06 ; systematic_id "SPBC32H8.06" ; colour "10" ; gene "SPBC32H8.06 ||| mug93" ; Alias "mug93" ; obsolete_name "pi018 ||| SPACTOKYO_453.18" ; db_xref "SPD:50/50F04" ; GO "GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=TPR repeat protein; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908" ; primary_name "mug93" ; product "TPR repeat protein, meiotically spliced" ;
chromosome2 GeneDB CDS 1461719 1461775 . + . mRNA SPBC32H8.06 ; colour "10" ;
chromosome2 GeneDB CDS 1461835 1461944 . + . mRNA SPBC32H8.06 ; colour "10" ;
chromosome2 GeneDB CDS 1462099 1463083 . + . mRNA SPBC32H8.06 ; colour "10" ;
chromosome2 GeneDB misc_feature 1461776 1461781 . + . misc_feature unknown_1110 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1461817 1461834 . + . misc_feature unknown_1111 ; colour "6" ; note "ctaaccctcaataaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1461945 1461950 . + . misc_feature unknown_1112 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1462079 1462098 . + . misc_feature unknown_1113 ; colour "6" ; note "ctaacttattttgcatgcag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 1463896 1464325 . + . mRNA SPBC32H8.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.07" ; systematic_id "SPBC32H8.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1464326 1465243 . + . mRNA SPBC32H8.07 ; systematic_id "SPBC32H8.07" ; colour "2" ; gene "git5 ||| gpb1 ||| SPBC32H8.07" ; Alias "git5" ; db_xref "SPD:41/41G09" ; synonym "gpb1" ; GO "GO:0005834; heterotrimeric G-protein complex
GO:0007186; G-protein coupled receptor protein signaling pathway
GO:0007190; adenylate cyclase activation
GO:0019933; cAMP-mediated signaling
GO:0010619; activation of adenylate cyclase activity by glucose-triggered G-protein signaling pathway
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0045014; negative regulation of transcription by glucose" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=warning, S. cerevisiae YOR212W is not functional ortholog; cv=warning; date=19700101 ||| term=orthologouus to S. cerevisiae YOR212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505" ; primary_name "git5" ; product "heterotrimeric G protein beta subunit Git5" ;
chromosome2 GeneDB CDS 1464326 1465243 . + . mRNA SPBC32H8.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1465244 1465599 . + . mRNA SPBC32H8.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.07" ; systematic_id "SPBC32H8.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1465811 1467431 . - . mRNA SPBC32H8.08c ; systematic_id "SPBC32H8.08c" ; colour "7" ; gene "SPBC32H8.08c" ; Alias "omh5" ; obsolete_name "pi016 ||| SPACTOKYO_453.20" ; db_xref "SPD:49/49B08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL029C and YIL085C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100525" ; GO "GO:0000139; Golgi membrane
GO:0000032; cell wall mannoprotein biosynthesis
GO:0035268; protein amino acid mannosylation
GO:0000026; alpha-1,2-mannosyltransferase activity" ; primary_name "omh5" ; product "alpha-1,2-mannosyltransferase Omh5 (predicted)" ;
chromosome2 GeneDB CDS 1465811 1466035 . - . mRNA SPBC32H8.08c ; colour "7" ;
chromosome2 GeneDB CDS 1466138 1467057 . - . mRNA SPBC32H8.08c ; colour "7" ;
chromosome2 GeneDB CDS 1467311 1467431 . - . mRNA SPBC32H8.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 1466036 1466049 . - . misc_feature unknown_1114 ; colour "6" ; note "ctaacttattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1466132 1466137 . - . misc_feature unknown_1115 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1467305 1467310 . - . misc_feature unknown_1116 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1467457 1467470 . - . misc_feature unknown_1117 ; colour "6" ; note "ctgattagagaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1467508 1467513 . - . misc_feature unknown_1118 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB snoRNA 1468185 1468406 . - . snoRNA SPSNORNA.47 ; Alias "snR95" ; db_xref "EMBL:AJ632013 ||| PMID:15716270" ; systematic_id "SPSNORNA.47" ; gene "SPSNORNA.47" ; primary_name "snR95" ; product "small nucleolar RNA snR95" ;
chromosome2 GeneDB 5'-UTR 1468511 1468524 . + . mRNA SPBC32H8.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.09" ; systematic_id "SPBC32H8.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1468525 1470087 . + . mRNA SPBC32H8.09 ; obsolete_name "pi015 ||| SPACTOKYO_453.21c" ; db_xref "SPD:50/50H03" ; systematic_id "SPBC32H8.09" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC32H8.09" ; product "WD repeat protein, human WDR8 family" ;
chromosome2 GeneDB CDS 1468525 1468887 . + . mRNA SPBC32H8.09 ; colour "10" ;
chromosome2 GeneDB CDS 1468960 1469035 . + . mRNA SPBC32H8.09 ; colour "10" ;
chromosome2 GeneDB CDS 1469075 1470087 . + . mRNA SPBC32H8.09 ; colour "10" ;
chromosome2 GeneDB misc_feature 1468888 1468893 . + . misc_feature unknown_1119 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1468941 1468959 . + . misc_feature unknown_1120 ; colour "6" ; note "ctaatagcaaattttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1469036 1469041 . + . misc_feature unknown_1121 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1469063 1469074 . + . misc_feature unknown_1122 ; colour "6" ; note "ctgactgtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1470088 1470332 . + . mRNA SPBC32H8.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.09" ; systematic_id "SPBC32H8.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1470604 1470679 . + . mRNA SPBC32H8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.10" ; systematic_id "SPBC32H8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1470680 1472626 . + . mRNA SPBC32H8.10 ; systematic_id "SPBC32H8.10" ; colour "2" ; gene "cdk9 ||| SPBC32H8.10" ; Alias "cdk9" ; obsolete_name "SPACTOKYO_453.22" ; db_xref "SPD:49/49D01" ; GO "GO:0070693; P-TEFb-cap methyltransferase complex
GO:0005634; nucleus
GO:0008024; positive transcription elongation factor complex b
GO:0005524; ATP binding
GO:0008353; RNA polymerase II carboxy-terminal domain kinase activity
GO:0004693; cyclin-dependent protein kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
; RNA polymerase II CTD terminal phosphorylation
GO:0006468; protein amino acid phosphorylation
GO:0090039; regulation of gene-specific transcription elongation from RNA polymerase II promoter
GO:0006360; transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12904290; date=19700101 ||| term=orthologous to S. cerevisiae YPR161C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, septation defects; cv=phenotype; db_xref=PMID:19328067; date=20090712 ||| term=target is Rpb1; qualifier=phosphorylates; db_xref=PMID:19328067; date=20090712 ||| term=target is Spt5; qualifier=phosphorylates; db_xref=PMID:19328067; date=20090712" ; primary_name "cdk9" ; product "P-TEFb-associated cyclin-dependent protein kinase Cdk9" ;
chromosome2 GeneDB CDS 1470680 1470822 . + . mRNA SPBC32H8.10 ; colour "2" ;
chromosome2 GeneDB CDS 1470874 1470955 . + . mRNA SPBC32H8.10 ; colour "2" ;
chromosome2 GeneDB CDS 1471076 1472626 . + . mRNA SPBC32H8.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 1470823 1470828 . + . misc_feature unknown_1123 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1470857 1470873 . + . misc_feature unknown_1124 ; colour "6" ; note "ctaacttggttcaccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1470956 1470961 . + . misc_feature unknown_1125 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1471057 1471075 . + . misc_feature unknown_1126 ; colour "6" ; note "ctaaagcattacattttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1472627 1472751 . + . mRNA SPBC32H8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.10" ; systematic_id "SPBC32H8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1473194 1474747 . + . mRNA SPBC32H8.11 ; systematic_id "SPBC32H8.11" ; colour "2" ; gene "mei4 ||| SPBC32H8.11 ||| dot4" ; Alias "mei4" ; obsolete_name "pi013 ||| SPACTOKYO_453.23" ; db_xref "SPD:50/50G12" ; synonym "dot4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=fork head domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=gene expression, expression autoregulated; cv=gene_ex; db_xref=PMID:10747048; date=19700101 ||| term=orthologous to S. cerevisiae YCR065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17927811; date=20090110 ||| term=DNA binding specificity, binds FLEX 5'-GTAAAYA-3'; cv=DNA_binding_specificity; date=20100122" ; GO "GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0051037; regulation of transcription, meiotic
GO:0016566; specific transcriptional repressor activity
GO:0016563; transcriptional activator activity
GO:0010674; negative regulation of transcription from RNA polymerase II promoter, meiotic
GO:0010673; positive regulation of transcription from RNA polymerase II promoter, meiotic" ; primary_name "mei4" ; product "meiotic forkhead transcription factor Mei4" ;
chromosome2 GeneDB CDS 1473194 1474747 . + . mRNA SPBC32H8.11 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1475485 1476148 . - . mRNA SPBC32H8.12c ; ID "SPBC32H8.12c" ; systematic_id "SPBC32H8.12c" ; note "mRNA from AU013563" ;
chromosome2 GeneDB CDS_parts 1476149 1477276 . - . mRNA SPBC32H8.12c ; systematic_id "SPBC32H8.12c" ; colour "2" ; gene "act1 ||| cps8 ||| SPBC32H8.12c" ; Alias "act1" ; obsolete_name "pi012" ; db_xref "SPD:50/50C12" ; synonym "cps8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:1524835; date=19700101 ||| term=orthologous to S. cerevisiae YFL039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0031011; Ino80 complex
GO:0035267; NuA4 histone acetyltransferase complex
GO:0000812; Swr1 complex
GO:0030479; actin cortical patch
GO:0005884; actin filament
GO:0005826; contractile ring
GO:0005628; forespore membrane
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0006338; chromatin remodeling
GO:0000915; cytokinesis, contractile ring formation
GO:0007163; establishment and/or maintenance of cell polarity
GO:0030100; regulation of endocytosis
GO:0043486; histone exchange
GO:0016573; histone acetylation" ; primary_name "act1" ; product "actin Act1" ;
chromosome2 GeneDB CDS 1476149 1477276 . - . mRNA SPBC32H8.12c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1477277 1477317 . - . mRNA SPBC32H8.12c ; ID "SPBC32H8.12c" ; systematic_id "SPBC32H8.12c" ; note "mRNA from AU010739" ;
chromosome2 GeneDB 3'-UTR 1478081 1478103 . - . mRNA SPBC32H8.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.13c" ; systematic_id "SPBC32H8.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1478104 1485162 . - . mRNA SPBC32H8.13c ; systematic_id "SPBC32H8.13c" ; colour "2" ; gene "mok12 ||| SPBC32H8.13c" ; Alias "mok12" ; obsolete_name "SPACTOKYO_453.25c" ; db_xref "SPD:49/49H11" ; GO "GO:0005619; fungal-type spore wall
GO:0005628; prospore membrane
GO:0047657; alpha-1,3-glucan synthase activity
GO:0004556; alpha-amylase activity
GO:0070596; alpha-1,3-glucan biosynthetic process
GO:0030979; alpha-glucan biosynthetic process
GO:0030476; ascospore wall assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20070309 ||| term=similar to S. pombe Mok1 and Mok11 and Mok13 and Mok14; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:16420355; date=20080430 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mok12" ; product "alpha-1,3-glucan synthase Mok12" ; EC_number "2.4.1.183" ;
chromosome2 GeneDB CDS 1478104 1485162 . - . mRNA SPBC32H8.13c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1485161 1486062 . - . mRNA SPBC32H8.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32H8.13c" ; systematic_id "SPBC32H8.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1486149 1486618 . + . misc_feature unknown_1127 ; note "nominal overlap with cosmid c32H8" ;
chromosome2 GeneDB misc_feature 1486149 1486618 . + . misc_feature unknown_1128 ; note "nominal overlap with cosmid c11B10" ;
chromosome2 GeneDB CDS_parts 1486152 1487938 . + . mRNA SPBC11B10.01 ; systematic_id "SPBC11B10.01" ; colour "7" ; obsolete_name "pi010 ||| SPACTOKYO_453.27" ; db_xref "SPD:49/49C05" ; Alias "alg2" ; synonym "SPBC32H8.14" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL065C; date=19700101 ||| term=disease associated, CDG-Ii; db_xref=PMID:12684507; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005783; endoplasmic reticulum
GO:0004378; glycolipid 3-alpha-mannosyltransferase activity
GO:0033164; glycolipid 6-alpha-mannosyltransferase activity
GO:0043413; biopolymer glycosylation
GO:0006490; oligosaccharide-lipid intermediate assembly" ; primary_name "alg2" ; product "mannosyltransferase complex subunit Alg2 (predicted)" ;
chromosome2 GeneDB CDS 1486152 1486236 . + . mRNA SPBC11B10.01 ; colour "7" ;
chromosome2 GeneDB CDS 1486284 1486400 . + . mRNA SPBC11B10.01 ; colour "7" ;
chromosome2 GeneDB CDS 1486472 1486925 . + . mRNA SPBC11B10.01 ; colour "7" ;
chromosome2 GeneDB CDS 1487059 1487938 . + . mRNA SPBC11B10.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 1486237 1486242 . + . misc_feature unknown_1129 ; colour "6" ; note "gtgaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1486271 1486283 . + . misc_feature unknown_1130 ; colour "6" ; note "ctaattactttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1486401 1486406 . + . misc_feature unknown_1131 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1486452 1486471 . + . misc_feature unknown_1132 ; colour "6" ; note "ctaactttatgaaataatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1486926 1486931 . + . misc_feature unknown_1133 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1487048 1487058 . + . misc_feature unknown_1134 ; colour "6" ; note "ttgattataag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1487939 1488262 . + . mRNA SPBC11B10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.01" ; systematic_id "SPBC11B10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1488035 1488210 . - . mRNA SPBC11B10.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.02c" ; systematic_id "SPBC11B10.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1488211 1489664 . - . mRNA SPBC11B10.02c ; systematic_id "SPBC11B10.02c" ; colour "2" ; gene "his3 ||| SPBC11B10.02c" ; Alias "his3" ; obsolete_name "pi009 ||| SPACTOKYO_453.27" ; db_xref "SPD:50/50G02" ; GO "GO:0000105; histidine biosynthesis
GO:0004400; histidinol-phosphate transaminase activity
GO:0010045; response to nickel ion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL116W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "his3" ; product "histidinol-phosphate aminotransferase imidazole acetol phosphate transaminase His3" ; EC_number "2.6.1.9" ;
chromosome2 GeneDB CDS 1488211 1488673 . - . mRNA SPBC11B10.02c ; colour "2" ;
chromosome2 GeneDB CDS 1488733 1489344 . - . mRNA SPBC11B10.02c ; colour "2" ;
chromosome2 GeneDB CDS 1489530 1489541 . - . mRNA SPBC11B10.02c ; colour "2" ;
chromosome2 GeneDB CDS 1489597 1489664 . - . mRNA SPBC11B10.02c ; colour "2" ;
chromosome2 GeneDB misc_feature 1488674 1488690 . - . misc_feature unknown_1135 ; colour "6" ; note "ctaactatgatgtttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1488674 1488732 . - . intron SPBC11B10.02c ; systematic_id "SPBC11B10.02c" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 1488727 1488732 . - . misc_feature unknown_1136 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1489345 1489357 . - . misc_feature unknown_1137 ; colour "6" ; note "ctaatcttaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1489524 1489529 . - . misc_feature unknown_1138 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1489542 1489557 . - . misc_feature unknown_1139 ; colour "6" ; note "ttaacatagaatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1489591 1489596 . - . misc_feature unknown_1140 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1489663 1489693 . - . mRNA SPBC11B10.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.02c" ; systematic_id "SPBC11B10.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1490611 1491747 . + . mRNA SPBC11B10.03 ; systematic_id "SPBC11B10.03" ; colour "7" ; gene "SPBC11B10.03 ||| cog8" ; Alias "cog8" ; obsolete_name "pi008 ||| SPACTOKYO_453.28c" ; db_xref "SPD:50/50F05" ; GO "GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML071C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cog8" ; product "Golgi transport complex subunit Cog8 (predicted)" ;
chromosome2 GeneDB CDS 1490611 1491747 . + . mRNA SPBC11B10.03 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1491831 1491954 . - . mRNA SPBC11B10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.04c" ; systematic_id "SPBC11B10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1491955 1492821 . - . mRNA SPBC11B10.04c ; systematic_id "SPBC11B10.04c" ; colour "7" ; gene "SPBC11B10.04c ||| mrps28" ; Alias "mrps28" ; obsolete_name "pi007 ||| SPACTOKYO_453.29" ; db_xref "SPD:41/41G02" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003723; RNA binding
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR337W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrps28" ; product "mitochondrial ribosomal protein subunit S28 (predicted)" ;
chromosome2 GeneDB CDS 1491955 1492821 . - . mRNA SPBC11B10.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1492820 1492937 . - . mRNA SPBC11B10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.04c" ; systematic_id "SPBC11B10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1493069 1494553 . - . mRNA SPBC11B10.05c ; systematic_id "SPBC11B10.05c" ; colour "2" ; gene "rsp1 ||| SPBC11B10.05c" ; Alias "rsp1" ; obsolete_name "pi006 ||| SPACTOKYO_453.30c" ; db_xref "SPD:50/50G05" ; GO "GO:0040023; establishment of nucleus localization
GO:0007163; establishment and/or maintenance of cell polarity
GO:0030544; Hsp70 protein binding
; equatorial microtubule organizing center
GO:0005816; spindle pole body
GO:0031021; interphase microtubule organizing center
GO:0031025; equatorial microtubule organizing center disassembly
GO:0031024; interphase microtubule organizing center formation
GO:0032187; contractile ring localization involved in cell cycle cytokinesis
GO:0061077; chaperone-mediated protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC1773.09C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15068790; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, septation defects; cv=phenotype; date=20091223 ||| term=name description, Random Septum Postioning; cv=name_description; date=20091223 ||| term=misc functional group, chaperone; cv=m_f_g; date=20100126" ; primary_name "rsp1" ; product "random septum position protein Rsp1" ;
chromosome2 GeneDB CDS 1493069 1494553 . - . mRNA SPBC11B10.05c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1494857 1495151 . + . mRNA SPBC11B10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.06" ; systematic_id "SPBC11B10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1495152 1495781 . + . mRNA SPBC11B10.06 ; systematic_id "SPBC11B10.06" ; colour "2" ; gene "sws1 ||| SPBC11B10.06" ; Alias "sws1" ; obsolete_name "pi005 ||| SPACTOKYO_453.32" ; db_xref "SPD:41/41D10" ; GO "GO:0005654; nucleoplasm
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000725; recombinational repair
GO:0000725; recombinational repair
GO:0000725; recombinational repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-SWIM; date=19700101 ||| term=orthologous to S. cerevisiae YDR078C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, sensitive to MMS; cv=phenotype; db_xref=PMID:16710300; date=20091215" ; primary_name "sws1" ; product "SWIM domain containing-Srs2 interacting protein 1" ;
chromosome2 GeneDB CDS 1495152 1495781 . + . mRNA SPBC11B10.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1495782 1495908 . + . mRNA SPBC11B10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.06" ; systematic_id "SPBC11B10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1495924 1496095 . - . mRNA SPBC11B10.07c ; ID "SPBC11B10.07c" ; systematic_id "SPBC11B10.07c" ; note "mRNA from spc12116 464 364" ;
chromosome2 GeneDB CDS_parts 1496096 1497491 . - . mRNA SPBC11B10.07c ; systematic_id "SPBC11B10.07c" ; colour "7" ; gene "SPBC11B10.07c ||| ivn1" ; Alias "ivn1" ; obsolete_name "pi004 ||| SPACTOKYO_453.33c" ; db_xref "SPD:50/50F09" ; GO "GO:0016021; integral to membrane
GO:0005770; late endosome
GO:0005886; plasma membrane
GO:0007166; cell surface receptor linked signal transduction
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR094W and YNL323W and YNR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, InVasioN defective; db_xref=PMID:19542312; date=20090629 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706" ; primary_name "ivn1" ; product "CDC50 domain protein, implicated in signal transduction (predicted)" ;
chromosome2 GeneDB CDS 1496096 1497019 . - . mRNA SPBC11B10.07c ; colour "7" ;
chromosome2 GeneDB CDS 1497242 1497380 . - . mRNA SPBC11B10.07c ; colour "7" ;
chromosome2 GeneDB CDS 1497439 1497491 . - . mRNA SPBC11B10.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 1497020 1497038 . - . misc_feature unknown_1141 ; colour "6" ; note "ctaatcaacattttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1497236 1497241 . - . misc_feature unknown_1142 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1497381 1497395 . - . misc_feature unknown_1143 ; colour "6" ; note "ctgatccgtatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1497433 1497438 . - . misc_feature unknown_1144 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1497490 1497558 . - . mRNA SPBC11B10.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.07c" ; systematic_id "SPBC11B10.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1497664 1498394 . - . misc_RNA SPNCRNA.24 ; Alias "prl24" ; db_xref "PMID:12597277 ||| EMBL:AB084836" ; systematic_id "SPNCRNA.24" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl24" ; gene "prl24 ||| SPNCRNA.24" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB 5'-UTR 1498545 1498800 . + . mRNA SPBC11B10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.08" ; systematic_id "SPBC11B10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1498801 1499415 . + . mRNA SPBC11B10.08 ; obsolete_name "pi003 ||| SPACTOKYO_453.33c" ; db_xref "SPD:41/41D09" ; systematic_id "SPBC11B10.08" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL010C; date=19700101 ||| term=WW domain; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC11B10.08" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1498801 1499415 . + . mRNA SPBC11B10.08 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 1499416 1499813 . + . mRNA SPBC11B10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.08" ; systematic_id "SPBC11B10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1500248 1500339 . + . mRNA SPBC11B10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.09" ; systematic_id "SPBC11B10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1500340 1501528 . + . mRNA SPBC11B10.09 ; systematic_id "SPBC11B10.09" ; colour "2" ; obsolete_name "pi002 ||| SPACTOKYO_453.34" ; db_xref "SPD:50/50D08" ; Alias "cdc2" ; synonym "swo2 ||| cdk1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:958201; date=20100730 ||| term=orthologous to S. cerevisiae YBR160W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=CDK family kinase; date=20090122 ||| term=target of Mcs6; residue=Thr167; date=20090717 ||| term=target of Cdc23; qualifier=dephosphorylated_by|activates; residue=Tyr15?; date=20090826 ||| term=target of Wee1; qualifier=phosphorylated_by|inhibits; residue=Tyr15?; date=20090826 ||| term=target is Klp9; qualifier=phosphorylates; db_xref=PMID:19666868; date=20090820 ||| term=target is Ase1; qualifier=phosphorylates; db_xref=PMID:19666868; date=20090820 ||| term=target is Res2; qualifier=phosphorylates; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; residue=Tyr15; qualifier=inhibits; cv=pt_mod; db_xref=PMID:2682257; date=20090213 ||| term=modification, phosphorylated; residue=Tyr15; qualifier=inhibits|during_checkpoint_activation; cv=pt_mod; db_xref=PMID:9042863; date=20090213" ; GO "GO:0000307; cyclin-dependent protein kinase holoenzyme complex
GO:0004693; cyclin-dependent protein kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007095; mitotic cell cycle G2-M transition DNA damage checkpoint
GO:0070317; negative regulation of G1 to G0 transition
GO:2000045; regulation of G1/S transition of mitotic cell cycle
GO:0008361; regulation of cell size
GO:0007089; traversing start control point of mitotic cell cycle" ; primary_name "cdc2" ; product "cyclin-dependent protein kinase Cdk1/Cdc2" ;
chromosome2 GeneDB CDS 1500340 1500376 . + . mRNA SPBC11B10.09 ; colour "2" ;
chromosome2 GeneDB CDS 1500445 1500613 . + . mRNA SPBC11B10.09 ; colour "2" ;
chromosome2 GeneDB CDS 1500686 1500986 . + . mRNA SPBC11B10.09 ; colour "2" ;
chromosome2 GeneDB CDS 1501088 1501393 . + . mRNA SPBC11B10.09 ; colour "2" ;
chromosome2 GeneDB CDS 1501448 1501528 . + . mRNA SPBC11B10.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 1500377 1500382 . + . misc_feature unknown_1145 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB intron 1500377 1500444 . + . intron SPBC11B10.09 ; systematic_id "SPBC11B10.09" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 1500435 1500444 . + . misc_feature unknown_1146 ; colour "6" ; note "ctaatgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1500614 1500619 . + . misc_feature unknown_1147 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 1500614 1500685 . + . intron SPBC11B10.09 ; systematic_id "SPBC11B10.09" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 1500670 1500685 . + . misc_feature unknown_1148 ; colour "6" ; note "ctaacccttttttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1500987 1500992 . + . misc_feature unknown_1149 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB intron 1500987 1501087 . + . intron SPBC11B10.09 ; systematic_id "SPBC11B10.09" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 1501076 1501087 . + . misc_feature unknown_1150 ; colour "6" ; note "ctaaccgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1501394 1501399 . + . misc_feature unknown_1151 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1501431 1501447 . + . misc_feature unknown_1152 ; colour "6" ; note "ctaaccattttgtcaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1501529 1501951 . + . mRNA SPBC11B10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.09" ; systematic_id "SPBC11B10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1502341 1502641 . - . mRNA SPBC11B10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.10c" ; systematic_id "SPBC11B10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1502642 1503064 . - . mRNA SPBC11B10.10c ; systematic_id "SPBC11B10.10c" ; colour "2" ; gene "pht1 ||| SPBC11B10.10c" ; Alias "pht1" ; obsolete_name "pi001" ; db_xref "SPD:41/41D01" ; GO "GO:0006338; chromatin remodeling
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0000812; Swr1 complex
GO:0031011; Ino80 complex
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YOL012C; date=19700101 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:19040720; date=20080905 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:cccccccc; date=20090110" ; primary_name "pht1" ; product "histone H2A variant H2A.Z, Pht1" ;
chromosome2 GeneDB CDS 1502642 1503064 . - . mRNA SPBC11B10.10c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1503156 1503437 . - . mRNA SPBC11B10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11B10.10c" ; systematic_id "SPBC11B10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1503918 1503999 . + . misc_feature unknown_1153 ; note "nominal overlap with SPBC1215 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 1503918 1503999 . - . misc_feature unknown_1154 ; note "nominal overlap with cosmid SPAB4534 (c1750), EM:AB004534 S. pombe chromosome 2" ;
chromosome2 GeneDB tRNA 1503953 1504024 . + . tRNA SPBTRNATHR.06 ; systematic_id "SPBTRNATHR.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033413; TGT codon-amino acid adaptor activity" ; gene "SPBTRNATHR.06" ; product "tRNA Threonine" ; note "tRNA Thr anticodon TGT, Cove score 78.51" ;
chromosome2 GeneDB rRNA 1504332 1504498 . + . rRNA SPRRNA.33 ; systematic_id "SPRRNA.33" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.33" ; product "5S rRNA" ;
chromosome2 GeneDB 5'-UTR 1505171 1505417 . + . mRNA SPBC1215.01 ; ID "SPBC1215.01" ; systematic_id "SPBC1215.01" ; note "mRNA from spc00220" ;
chromosome2 GeneDB CDS_parts 1505418 1506373 . + . mRNA SPBC1215.01 ; systematic_id "SPBC1215.01" ; colour "7" ; gene "SPBC1215.01 ||| shy1" ; db_xref "SPD:13/13E04" ; Alias "shy1" ; GO "GO:0009060; aerobic respiration
GO:0005743; mitochondrial inner membrane
GO:0008535; cytochrome c oxidase complex assembly
GO:0051082; unfolded protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=surfeit locus (SURF40 family); date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Leigh syndrome; date=20091218 ||| term=disease associated, neurological disorders; date=20091218" ; primary_name "shy1" ; product "SURF-family protein Shy1 (predicted)" ;
chromosome2 GeneDB CDS 1505418 1505677 . + . mRNA SPBC1215.01 ; colour "7" ;
chromosome2 GeneDB CDS 1505761 1506373 . + . mRNA SPBC1215.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 1505678 1505683 . + . misc_feature unknown_1155 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1505744 1505760 . + . misc_feature unknown_1156 ; colour "6" ; note "ctaacataatcacttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1506374 1506797 . + . mRNA SPBC1215.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1215.01" ; systematic_id "SPBC1215.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1506412 1509383 . - . mRNA SPBC1215.02c ; systematic_id "SPBC1215.02c" ; colour "7" ; gene "SPBC1215.02c ||| arm1 ||| mdm20" ; Alias "naa25" ; db_xref "SPD:47/47F05" ; synonym "arm1 ||| mdm20" ; GO "GO:0017196; N-terminal peptidyl-methionine acetylation
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0000001; mitochondrion inheritance
GO:0005622; intracellular
GO:0007005; mitochondrion organization and biogenesis
GO:0003779; actin binding
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0031416; NatB complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YOL076W; date=19700101 ||| term=phenotype, resistance to amorilide; cv=phenotype; date=20070704 ||| term=target is tropomyosin; qualifier=predicted; date=20070704 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, septation defects; qualifier=deletion; attribution=pers. comm. P. Young; cv=phenotype; date=20100317 ||| term=phenotype, cytoskeletal defects; qualifier=deletion; attribution=pers. comm. P. Young; cv=phenotype; date=20100317 ||| term=phenotype, endocytosis defects; qualifier=deletion; attribution=pers. comm. P. Young; cv=phenotype; date=20100317 ||| term=phenotype, pleiotropic effects; qualifier=deletion; attribution=pers. comm. P. Young; cv=phenotype; date=20100317 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622 ||| term=human c12orf30 ortholog; date=20110113" ; primary_name "naa25" ; product "NatB N-acetyltransferase complex non catalytic subunit Naa25 (predicted)" ;
chromosome2 GeneDB CDS 1506412 1506519 . - . mRNA SPBC1215.02c ; colour "7" ;
chromosome2 GeneDB CDS 1506580 1506798 . - . mRNA SPBC1215.02c ; colour "7" ;
chromosome2 GeneDB CDS 1506870 1507988 . - . mRNA SPBC1215.02c ; colour "7" ;
chromosome2 GeneDB CDS 1508028 1508289 . - . mRNA SPBC1215.02c ; colour "7" ;
chromosome2 GeneDB CDS 1508330 1508766 . - . mRNA SPBC1215.02c ; colour "7" ;
chromosome2 GeneDB CDS 1508806 1508924 . - . mRNA SPBC1215.02c ; colour "7" ;
chromosome2 GeneDB CDS 1509168 1509306 . - . mRNA SPBC1215.02c ; colour "7" ;
chromosome2 GeneDB CDS 1509351 1509383 . - . mRNA SPBC1215.02c ; colour "7" ;
chromosome2 GeneDB misc_feature 1506520 1506529 . - . misc_feature unknown_1157 ; colour "6" ; note "ctaataatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1506574 1506579 . - . misc_feature unknown_1158 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1506799 1506813 . - . misc_feature unknown_1159 ; colour "6" ; note "ctaaccgaattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1506864 1506869 . - . misc_feature unknown_1160 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1507989 1508002 . - . misc_feature unknown_1161 ; colour "6" ; note "ttaactcgtcgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1508022 1508027 . - . misc_feature unknown_1162 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1508290 1508304 . - . misc_feature unknown_1163 ; colour "6" ; note "ctaacttctccatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1508324 1508329 . - . misc_feature unknown_1164 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1508767 1508778 . - . misc_feature unknown_1165 ; colour "6" ; note "ctaactcctcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1508800 1508805 . - . misc_feature unknown_1166 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1508925 1508938 . - . misc_feature unknown_1167 ; colour "6" ; note "ttaactatttgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1509162 1509167 . - . misc_feature unknown_1168 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1509307 1509322 . - . misc_feature unknown_1169 ; colour "6" ; note "ttaacatcctttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1509345 1509350 . - . misc_feature unknown_1170 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1509382 1509437 . - . mRNA SPBC1215.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1215.02c" ; systematic_id "SPBC1215.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1509703 1510279 . + . misc_RNA SPNCRNA.351 ; db_xref "PMID:18488015" ; synonym "SPNG1403" ; systematic_id "SPNCRNA.351" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 1510206 1510580 . + . mRNA SPBC83.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.01" ; systematic_id "SPBC83.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1510304 1510407 . + . misc_feature unknown_1171 ; note "nominal overlap between cosmid SPBC1215 and cosmid SPBC83" ;
chromosome2 GeneDB CDS_parts 1510581 1513430 . + . mRNA SPBC83.01 ; systematic_id "SPBC83.01" ; colour "2" ; gene "ucp8 ||| SPBC83.01" ; Alias "ucp8" ; db_xref "SPD:29/29F01" ; GO "GO:0043130; ubiquitin binding
GO:0005509; calcium ion binding
GO:0006897; endocytosis
GO:0000147; actin cortical patch assembly
GO:0030479; actin cortical patch
GO:0006886; intracellular protein transport
GO:0006898; receptor-mediated endocytosis
GO:0031593; polyubiquitin binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=UBA domain protein; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=EH domains; date=19700101 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YBL047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ucp8" ; product "UBA/EH/EF hand domain protein Ucp8" ;
chromosome2 GeneDB CDS 1510581 1510730 . + . mRNA SPBC83.01 ; colour "2" ;
chromosome2 GeneDB CDS 1510881 1511004 . + . mRNA SPBC83.01 ; colour "2" ;
chromosome2 GeneDB CDS 1511050 1513430 . + . mRNA SPBC83.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 1510731 1510736 . + . misc_feature unknown_1172 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1510862 1510880 . + . misc_feature unknown_1173 ; colour "6" ; note "ctaactgccaatttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1511005 1511010 . + . misc_feature unknown_1174 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1511036 1511049 . + . misc_feature unknown_1175 ; colour "6" ; note "ctaacattaatcag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 1513393 1513739 . - . mRNA SPBC83.02c ; systematic_id "SPBC83.02c" ; colour "7" ; gene "rpl4302 ||| rpl43-2 ||| rpl43 ||| SPBC83.02c ||| rpl37a-2" ; Alias "rpl4302" ; db_xref "SPD:39/39G05" ; synonym "rpl43-2 ||| rpl43 ||| rpl37a-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR043W and YJR094W-A; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "rpl4302" ; product "60S ribosomal protein L37a (predicted)" ;
chromosome2 GeneDB CDS 1513393 1513520 . - . mRNA SPBC83.02c ; colour "7" ;
chromosome2 GeneDB CDS 1513583 1513739 . - . mRNA SPBC83.02c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1513431 1513564 . + . mRNA SPBC83.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.01" ; systematic_id "SPBC83.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1513521 1513537 . - . misc_feature unknown_1176 ; colour "6" ; note "ctaacgtttatgtatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1513521 1513582 . - . intron SPBC83.02c ; systematic_id "SPBC83.02c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1513577 1513582 . - . misc_feature unknown_1177 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 1514006 1514478 . - . mRNA SPBC83.03c ; ID "SPBC83.03c" ; systematic_id "SPBC83.03c" ; note "mRNA from AU013349" ;
chromosome2 GeneDB CDS_parts 1514479 1516128 . - . mRNA SPBC83.03c ; systematic_id "SPBC83.03c" ; colour "2" ; gene "SPBC83.03c ||| tas3" ; db_xref "SPD:34/34F08" ; Alias "tas3" ; GO "GO:0030958; RITS complex
GO:0005721; centric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0000790; nuclear chromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0045132; meiotic chromosome segregation
GO:0090052; regulation of chromatin silencing at centromere
GO:0031060; regulation of histone methylation
GO:0031048; small RNA-mediated chromatin silencing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=name description, TArgeting complex Subunit; cv=name_description; date=20060220 ||| term=species distribution, conserved in Eukaryotes only; date=20090429 ||| term=species distribution, conserved in Fungi; date=20090429 ||| term=species distribution, conserved in Metazoa; date=20090429 ||| term=species distribution, conserved in Vertebrates; date=20090429 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090429 ||| term=phenotype, siRNAs homologous to outer repeats undetectable; cv=phenotype; date=20100318" ; primary_name "tas3" ; product "RITS complex subunit 3" ;
chromosome2 GeneDB CDS 1514479 1516128 . - . mRNA SPBC83.03c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1516127 1516144 . - . mRNA SPBC83.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.03c" ; systematic_id "SPBC83.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1516727 1517204 . + . mRNA SPBC83.04 ; systematic_id "SPBC83.04" ; colour "2" ; gene "apc15 ||| SPBC83.04" ; Alias "apc15" ; db_xref "SPD:04/04D07" ; GO "GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0016567; protein ubiquitination
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR025W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "apc15" ; product "anaphase-promoting complex subunit Apc15" ;
chromosome2 GeneDB CDS 1516727 1516834 . + . mRNA SPBC83.04 ; colour "2" ;
chromosome2 GeneDB CDS 1516902 1517204 . + . mRNA SPBC83.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 1516835 1516840 . + . misc_feature unknown_1178 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1516882 1516901 . + . misc_feature unknown_1179 ; colour "6" ; note "ctaacttgaacgaatcttag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 1517668 1519989 . + . mRNA SPBC83.05 ; db_xref "SPD:28/28C10" ; systematic_id "SPBC83.05" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YMR302C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC83.05" ; product "mitochondrial RNA-binding protein (predicted)" ;
chromosome2 GeneDB CDS 1517668 1519989 . + . mRNA SPBC83.05 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1519990 1520054 . + . mRNA SPBC83.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.05" ; systematic_id "SPBC83.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1520054 1520211 . - . mRNA SPBC83.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.06c" ; systematic_id "SPBC83.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1520212 1520391 . - . mRNA SPBC83.06c ; db_xref "SPD:01/01A08" ; systematic_id "SPBC83.06c" ; colour "7" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL183W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC83.06c" ; product "mitochondrial ribosomal protein subunit L36, Rtc6 (predicted)" ;
chromosome2 GeneDB CDS 1520212 1520391 . - . mRNA SPBC83.06c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1520392 1520699 . - . mRNA SPBC83.06c ; ID "SPBC83.06c" ; systematic_id "SPBC83.06c" ; note "from AU008153, clone spc02958" ;
chromosome2 GeneDB 5'-UTR 1520988 1521270 . + . mRNA SPBC83.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.07" ; systematic_id "SPBC83.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1521271 1523585 . + . mRNA SPBC83.07 ; systematic_id "SPBC83.07" ; colour "2" ; gene "jmj3 ||| ecm5 ||| SPBC83.07" ; Alias "jmj3" ; db_xref "SPD:28/28C08" ; synonym "kdm4" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=jmjC domain; date=20061206 ||| term=zinc finger protein; date=20061206 ||| term=orthologous to S. cerevisiae YER169W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0048189; Lid2 complex
GO:0000790; nuclear chromatin
GO:0051864; histone demethylase activity (H3-K36 specific)
GO:0016566; specific transcriptional repressor activity
GO:0006338; chromatin remodeling
GO:0016577; histone demethylation
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "jmj3" ; product "Lid2 complex subunit, histone demethylase H3-K36 specific Jmj3" ;
chromosome2 GeneDB CDS 1521271 1521387 . + . mRNA SPBC83.07 ; colour "2" ;
chromosome2 GeneDB CDS 1521444 1523585 . + . mRNA SPBC83.07 ; colour "2" ;
chromosome2 GeneDB misc_feature 1521388 1521393 . + . misc_feature unknown_1180 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1521426 1521443 . + . misc_feature unknown_1181 ; colour "6" ; note "ttaacaaaatttgtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1523586 1523628 . + . mRNA SPBC83.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.07" ; systematic_id "SPBC83.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1524007 1525505 . + . mRNA SPBC83.08 ; systematic_id "SPBC83.08" ; colour "2" ; gene "SPBC83.08 ||| rvb2" ; Alias "rvb2" ; db_xref "SPD:24/24C09" ; GO "GO:0000812; Swr1 complex
GO:0016887; ATPase activity
GO:0006338; chromatin remodeling
GO:0031011; Ino80 complex
GO:0070209; ASTRA complex
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YPL235W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230" ; primary_name "rvb2" ; product "AAA family ATPase Rvb2" ;
chromosome2 GeneDB CDS 1524007 1524055 . + . mRNA SPBC83.08 ; colour "2" ;
chromosome2 GeneDB CDS 1524157 1525505 . + . mRNA SPBC83.08 ; colour "2" ;
chromosome2 GeneDB misc_feature 1524056 1524061 . + . misc_feature unknown_1182 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1524137 1524156 . + . misc_feature unknown_1183 ; colour "6" ; note "ctaatctttactgtttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1525506 1525661 . + . mRNA SPBC83.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.08" ; systematic_id "SPBC83.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1525693 1526965 . - . mRNA SPBC83.09c ; db_xref "SPD:44/44B05" ; systematic_id "SPBC83.09c" ; colour "10" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005682; snRNP U5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR156C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC83.09c" ; product "GYF domain protein" ;
chromosome2 GeneDB CDS 1525693 1526801 . - . mRNA SPBC83.09c ; colour "10" ;
chromosome2 GeneDB CDS 1526848 1526965 . - . mRNA SPBC83.09c ; colour "10" ;
chromosome2 GeneDB misc_feature 1526802 1526819 . - . misc_feature unknown_1184 ; colour "6" ; note "ctaacattcaattcacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1526842 1526847 . - . misc_feature unknown_1185 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1527751 1527905 . + . mRNA SPBC83.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.10" ; systematic_id "SPBC83.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1527906 1528475 . + . mRNA SPBC83.10 ; db_xref "SPD:06/06A07" ; systematic_id "SPBC83.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC83.10" ; product "human c15orf24 ortholog" ;
chromosome2 GeneDB CDS 1527906 1528475 . + . mRNA SPBC83.10 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 1528476 1528681 . + . mRNA SPBC83.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.10" ; systematic_id "SPBC83.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1529066 1529290 . + . mRNA SPBC83.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.11" ; systematic_id "SPBC83.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1529291 1530631 . + . mRNA SPBC83.11 ; db_xref "SPD:20/20G04" ; systematic_id "SPBC83.11" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005783; endoplasmic reticulum
GO:0035436; triose phosphate transmembrane transport
GO:0071917; triose-phosphate transmembrane transporter activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL193W and YOR307C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC83.11" ; product "ER triose phosphate transmembrane transporter (predicted)" ;
chromosome2 GeneDB CDS 1529291 1529340 . + . mRNA SPBC83.11 ; colour "7" ;
chromosome2 GeneDB CDS 1529377 1530631 . + . mRNA SPBC83.11 ; colour "7" ;
chromosome2 GeneDB misc_feature 1529341 1529346 . + . misc_feature unknown_1186 ; colour "6" ; note "gtgaaa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1529364 1529376 . + . misc_feature unknown_1187 ; colour "6" ; note "ctaactattgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1530632 1531381 . + . mRNA SPBC83.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.11" ; systematic_id "SPBC83.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1531271 1531459 . + . misc_feature unknown_1188 ; note "region associated with LTR and previous transposition event" ;
chromosome2 GeneDB 5'-UTR 1531988 1532017 . + . mRNA SPBC83.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.12" ; systematic_id "SPBC83.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1532018 1532503 . + . mRNA SPBC83.12 ; db_xref "SPD:04/04E09" ; systematic_id "SPBC83.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC83.12" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1532018 1532503 . + . mRNA SPBC83.12 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1532504 1532696 . + . mRNA SPBC83.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.12" ; systematic_id "SPBC83.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 1532619 1532951 . - . LTR unknown_1189 ; note "Tf2-type LTR" ;
chromosome2 GeneDB 5'-UTR 1533249 1533302 . + . mRNA SPBC83.13 ; ID "SPBC83.13" ; systematic_id "SPBC83.13" ; note "mRNA from SPD111" ;
chromosome2 GeneDB CDS_parts 1533303 1534184 . + . mRNA SPBC83.13 ; db_xref "SPD:43/43E04" ; systematic_id "SPBC83.13" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006842; tricarboxylic acid transport
GO:0005371; tricarboxylate carrier activity
GO:0003677; DNA binding
GO:0000002; mitochondrial genome maintenance
GO:0042645; mitochondrial nucleoid" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YMR241W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC83.13" ; product "mitochondrial tricarboxylic acid transporter (predicted)" ;
chromosome2 GeneDB CDS 1533303 1534184 . + . mRNA SPBC83.13 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1534185 1534551 . + . mRNA SPBC83.13 ; ID "SPBC83.13" ; systematic_id "SPBC83.13" ; note "mRNA from AU012793" ;
chromosome2 GeneDB CDS_parts 1534776 1536055 . - . mRNA SPBC83.14c ; systematic_id "SPBC83.14c" ; colour "7" ; gene "rfc5 ||| SPBC83.14c" ; Alias "rfc5" ; db_xref "SPD:20/20E03" ; GO "GO:0005663; DNA replication factor C complex
GO:0006272; leading strand elongation
GO:0006281; DNA repair
GO:0003689; DNA clamp loader activity
GO:0031390; Ctf18 RFC-like complex
GO:0031391; Elg1 RFC-like complex
GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear relication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YBR087W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rfc5" ; product "DNA replication factor C complex subunit Rfc5 (predicted)" ;
chromosome2 GeneDB CDS 1534776 1535464 . - . mRNA SPBC83.14c ; colour "7" ;
chromosome2 GeneDB CDS 1535607 1535799 . - . mRNA SPBC83.14c ; colour "7" ;
chromosome2 GeneDB CDS 1535861 1536055 . - . mRNA SPBC83.14c ; colour "7" ;
chromosome2 GeneDB misc_feature 1535465 1535480 . - . misc_feature unknown_1190 ; colour "6" ; note "ctaacatgctccttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1535601 1535606 . - . misc_feature unknown_1191 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1535800 1535815 . - . misc_feature unknown_1192 ; colour "6" ; note "ctcacaatgaatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1535855 1535860 . - . misc_feature unknown_1193 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1536054 1536113 . - . mRNA SPBC83.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.14c" ; systematic_id "SPBC83.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1536882 1536898 . + . mRNA SPBC83.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.15" ; systematic_id "SPBC83.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1536899 1538454 . + . mRNA SPBC83.15 ; db_xref "SPD:25/25B11" ; systematic_id "SPBC83.15" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC83.15" ; product "ribosome biogenesis protein Nsa1 (predicted)" ;
chromosome2 GeneDB CDS 1536899 1536938 . + . mRNA SPBC83.15 ; colour "7" ;
chromosome2 GeneDB CDS 1536988 1537106 . + . mRNA SPBC83.15 ; colour "7" ;
chromosome2 GeneDB CDS 1537267 1537806 . + . mRNA SPBC83.15 ; colour "7" ;
chromosome2 GeneDB CDS 1537868 1537965 . + . mRNA SPBC83.15 ; colour "7" ;
chromosome2 GeneDB CDS 1538088 1538454 . + . mRNA SPBC83.15 ; colour "7" ;
chromosome2 GeneDB misc_feature 1536939 1536944 . + . misc_feature unknown_1194 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1536969 1536987 . + . misc_feature unknown_1195 ; colour "6" ; note "ctaataaaggtgattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1537107 1537112 . + . misc_feature unknown_1196 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1537249 1537266 . + . misc_feature unknown_1197 ; colour "6" ; note "ttaacttgttaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1537807 1537812 . + . misc_feature unknown_1198 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1537854 1537867 . + . misc_feature unknown_1199 ; colour "6" ; note "ttaacaacaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1537966 1537971 . + . misc_feature unknown_1200 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1538074 1538087 . + . misc_feature unknown_1201 ; colour "6" ; note "ttgaccaaatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1538455 1538567 . + . mRNA SPBC83.15 ; ID "SPBC83.15" ; systematic_id "SPBC83.15" ; note "mRNA from spc02546 1 344" ;
chromosome2 GeneDB 3'-UTR 1538636 1538800 . - . mRNA SPBC83.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.16c" ; systematic_id "SPBC83.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1538801 1540492 . - . mRNA SPBC83.16c ; db_xref "SPD:35/35C08" ; systematic_id "SPBC83.16c" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL082W and YKR018C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081209 ||| term=species distribution, conserved in Metazoa; date=20081209 ||| term=species distribution, conserved in Eukaryotes only; date=20081209 ||| term=human c9orf52 ortholog; date=20100728" ; gene "SPBC83.16c" ; product "conserved eukaryotic protein" ;
chromosome2 GeneDB CDS 1538801 1540492 . - . mRNA SPBC83.16c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 1540491 1541448 . - . mRNA SPBC83.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.16c" ; systematic_id "SPBC83.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1541452 1541811 . - . mRNA SPBC83.19c ; db_xref "SPD:51/51H02" ; systematic_id "SPBC83.19c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC83.19c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1541452 1541811 . - . mRNA SPBC83.19c ; colour "8" ;
chromosome2 GeneDB misc_RNA 1542196 1542364 . + . misc_RNA SPNCRNA.352 ; db_xref "PMID:18488015" ; synonym "SPNG1404" ; systematic_id "SPNCRNA.352" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 1542595 1542598 . + . mRNA SPBC83.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.17" ; systematic_id "SPBC83.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1542599 1543045 . + . mRNA SPBC83.17 ; db_xref "SPD:03/03H03" ; systematic_id "SPBC83.17" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0003713; transcription coactivator activity
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0010552; positive regulation of gene specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR298C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC83.17" ; product "transcriptional coactivator, multiprotein bridging factor Mbf1 (predicted)" ;
chromosome2 GeneDB CDS 1542599 1543045 . + . mRNA SPBC83.17 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1543046 1543201 . + . mRNA SPBC83.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC83.17" ; systematic_id "SPBC83.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1543492 1543894 . - . mRNA SPBC83.18c ; ID "SPBC83.18c" ; systematic_id "SPBC83.18c" ; note "mRNA from AU012012" ;
chromosome2 GeneDB CDS_parts 1543895 1544766 . - . mRNA SPBC83.18c ; systematic_id "SPBC83.18c" ; colour "2" ; gene "SPBC83.18c" ; Alias "fic1" ; db_xref "SPD:11/11G07" ; GO "GO:0005737; cytoplasm
GO:0005543; phospholipid binding
GO:0031566; contractile ring maintenance involved in cytokinesis
GO:0005826; contractile ring
GO:0051286; cell tip
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033205; cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YNL152W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=phenotype, viable; cv=phenotype; qualifier=deletion; db_xref=PMID:19139265; date=20090206 ||| term=modification, phosphorylated; db_xref=PMID:19139265; cv=pt_mod; date=20090206 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "fic1" ; product "C2 domain protein Fic1" ;
chromosome2 GeneDB CDS 1543895 1544665 . - . mRNA SPBC83.18c ; colour "2" ;
chromosome2 GeneDB CDS 1544719 1544766 . - . mRNA SPBC83.18c ; colour "2" ;
chromosome2 GeneDB misc_feature 1544666 1544683 . - . misc_feature unknown_1202 ; colour "6" ; note "ctaacgtgtcttctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1544713 1544718 . - . misc_feature unknown_1203 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB repeat_region 1545028 1545046 . + . repeat_region unknown_1204 ; note "(a)19" ;
chromosome2 GeneDB rep_origin 1545028 1545853 . + . rep_origin unknown_1205 ; note "experimental, but not exact boundaries" ;
chromosome2 GeneDB 5'-UTR 1546226 1547660 . + . mRNA SPBC29B5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29B5.01" ; systematic_id "SPBC29B5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1546238 1546718 . + . misc_RNA SPNCRNA.353 ; db_xref "PMID:18488015" ; synonym "SPNG1409" ; systematic_id "SPNCRNA.353" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_feature 1547438 1547538 . + . misc_feature unknown_1206 ; note "nominal overlap with SPBC83 S. pombe chromosome 2" ;
chromosome2 GeneDB CDS_parts 1547661 1549361 . + . mRNA SPBC29B5.01 ; systematic_id "SPBC29B5.01" ; colour "2" ; db_xref "SPD:33/33C12" ; Alias "atf1" ; synonym "mts1 ||| sss1 ||| gad7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bZIP (basic leucine zipper) transcription factor family; evidence=ISS; db_xref=PMID:8824587; date=19700101 ||| term=Atf-CREB subfamily; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=pathway, links stress-activated MAPK (Sty1) pathway to cAMP-dependent protein kinase (Pka1) pathway; db_xref=PMID:15448137; date=20090104 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:7958849; date=20090104 ||| term=subunit composition, heterodimer; cv=subunit_composition; db_xref=PMID:7958849; date=20090104 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:12529438; date=20090110 ||| term=phenotype, defective in recovery of translation after hyperosmotic shock; cv=phenotype; qualifier=deletion; db_xref=PMID:18065650; date=20090210 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target of Sty1 stress-activated MAP kinase pathway; db_xref=PMID:8824587; date=20090826 ||| term=DNA binding specificity, binds CRE 5'-TGACGT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates ntp1; db_xref=PMID:15164362; cv=gene_ex; date=20100302 ||| term=target of Sty1; qualifier=phosphorylated_by; db_xref=PMID:17072883; date=20100825" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0003723; RNA binding
GO:0010843; promoter binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0042803; protein homodimerization activity
GO:0010844; recombination hotspot binding
GO:0043565; sequence-specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000080; G1 phase of mitotic cell cycle
GO:0010846; activation of reciprocal meiotic recombination
GO:0046685; cellular response to arsenic
GO:0070301; cellular response to hydrogen peroxide
GO:0006995; cellular response to nitrogen starvation
GO:0009267; cellular response to starvation
GO:0009267; cellular response to starvation
GO:0031990; mRNA export from nucleus during heat stress
GO:0045128; negative regulation of reciprocal meiotic recombination
GO:0051039; positive regulation of transcription, meiotic
GO:0043949; regulation of cAMP-mediated signaling
GO:0010847; regulation of chromatin assembly
GO:0010848; regulation of chromatin disassembly
GO:0035065; regulation of histone acetylation
GO:0031060; regulation of histone methylation
GO:0010520; regulation of meiotic recombination
GO:0006355; regulation of transcription, DNA- dependent" ; primary_name "atf1" ; product "transcription factor, Atf-CREB family Atf1" ;
chromosome2 GeneDB CDS 1547661 1549361 . + . mRNA SPBC29B5.01 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1549362 1549746 . + . mRNA SPBC29B5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29B5.01" ; systematic_id "SPBC29B5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1550293 1550433 . - . mRNA SPBC29B5.02c ; ID "SPBC29B5.02c" ; systematic_id "SPBC29B5.02c" ; note "mRNA from AU008626" ;
chromosome2 GeneDB CDS_parts 1550434 1552791 . - . mRNA SPBC29B5.02c ; systematic_id "SPBC29B5.02c" ; colour "2" ; gene "isp4 ||| SPBC29B5.02c" ; Alias "isp4" ; db_xref "SPD:33/33G09" ; GO "GO:0000747; conjugation with cellular fusion
GO:0031142; induction of conjugation upon nitrogen starvation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL212C and YPR194C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "isp4" ; product "OPT oligopeptide transporter family Isp4" ;
chromosome2 GeneDB CDS 1550434 1552791 . - . mRNA SPBC29B5.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1552792 1553467 . - . mRNA SPBC29B5.02c ; ID "SPBC29B5.02c" ; db_xref "PMID:18488015" ; systematic_id "SPBC29B5.02c" ; note "From Solexa transcript SPNG1412 ||| This UTR seems to be specific for the meiotic transcript ||| the coordinates of this feature are not exact" ;
chromosome2 GeneDB misc_feature 1553468 1558178 . + . misc_feature unknown_1207 ; note "low complexity gene free region" ;
chromosome2 GeneDB misc_feature 1553854 1554142 . + . misc_feature unknown_1208 ; note "region of unusual composition" ;
chromosome2 GeneDB misc_feature 1554032 1554907 . + . misc_feature SPNCRNA.355 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.355" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1414" ;
chromosome2 GeneDB misc_feature 1555206 1557573 . + . misc_feature unknown_1209 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1416" ;
chromosome2 GeneDB misc_feature 1555816 1556023 . + . misc_feature unknown_1210 ; note "region of unusual composition" ;
chromosome2 GeneDB misc_feature 1557666 1558040 . + . misc_feature unknown_1211 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1417" ;
chromosome2 GeneDB 3'-UTR 1558179 1558239 . - . mRNA SPBC29B5.03c ; ID "SPBC29B5.03c" ; systematic_id "SPBC29B5.03c" ; note "mRNA from AU008061" ;
chromosome2 GeneDB CDS_parts 1558240 1558620 . - . mRNA SPBC29B5.03c ; systematic_id "SPBC29B5.03c" ; colour "7" ; gene "rpl26 ||| SPBC29B5.03c" ; Alias "rpl26" ; db_xref "SPD:31/31C12" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR344W and YGR034W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl26" ; product "60S ribosomal protein L26 (predicted)" ;
chromosome2 GeneDB CDS 1558240 1558620 . - . mRNA SPBC29B5.03c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1558939 1559304 . - . mRNA SPBC29B5.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29B5.04c" ; systematic_id "SPBC29B5.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1559305 1561122 . - . mRNA SPBC29B5.04c ; db_xref "SPD:33/33E01" ; systematic_id "SPBC29B5.04c" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0030036; actin cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL094W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPBC29B5.04c" ; product "actin cortical patch protein (predicted)" ;
chromosome2 GeneDB CDS 1559305 1561122 . - . mRNA SPBC29B5.04c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1561356 1561636 . - . mRNA SPBC27.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27.01c" ; systematic_id "SPBC27.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1561432 1561584 . + . misc_feature unknown_1212 ; note "nominal overlap between SPBC27 and cosmid SPBC29B5" ;
chromosome2 GeneDB CDS_parts 1561637 1562035 . - . mRNA SPBC27.01c ; db_xref "SPD:03/03A09" ; systematic_id "SPBC27.01c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0031965; nuclear membrane
GO:0000920; cell separation during cytokinesis
GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL149C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC27.01c" ; product "protein trafficking protein Pga2 (predicted)" ;
chromosome2 GeneDB CDS 1561637 1562035 . - . mRNA SPBC27.01c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1562034 1562074 . - . mRNA SPBC27.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27.01c" ; systematic_id "SPBC27.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1562508 1563564 . - . mRNA SPBC27.02c ; systematic_id "SPBC27.02c" ; colour "2" ; gene "ask1 ||| SPBC27.02c ||| mug181" ; Alias "ask1" ; db_xref "SPD:16/16B11" ; synonym "mug181" ; GO "GO:0042729; DASH complex
GO:0000779; condensed chromosome, pericentric region
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005816; spindle pole body
GO:0045132; meiotic chromosome segregation
GO:0007052; mitotic spindle organization and biogenesis
GO:0034613; cellular protein localization
GO:0031134; sister chromatid biorientation
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16079914; date=19700101 ||| term=orthologous to S. cerevisiae YKL052C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:16079914; date=20090213" ; primary_name "ask1" ; product "DASH complex subunit Ask1" ;
chromosome2 GeneDB CDS 1562508 1563266 . - . mRNA SPBC27.02c ; colour "2" ;
chromosome2 GeneDB CDS 1563345 1563492 . - . mRNA SPBC27.02c ; colour "2" ;
chromosome2 GeneDB CDS 1563548 1563564 . - . mRNA SPBC27.02c ; colour "2" ;
chromosome2 GeneDB misc_feature 1563267 1563280 . - . misc_feature unknown_1213 ; colour "6" ; note "ctaacagaaaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1563339 1563344 . - . misc_feature unknown_1214 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1563493 1563508 . - . misc_feature unknown_1215 ; colour "6" ; note "ctaacaaaagaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1563542 1563547 . - . misc_feature unknown_1216 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 1563902 1565770 . + . mRNA SPBC27.03 ; systematic_id "SPBC27.03" ; colour "8" ; db_xref "SPD:26/26C10" ; Alias "meu25" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu25" ; product "sequence orphan Meu25" ;
chromosome2 GeneDB CDS 1563902 1565770 . + . mRNA SPBC27.03 ; colour "8" ;
chromosome2 GeneDB CDS_parts 1566403 1569561 . + . mRNA SPBC27.04 ; systematic_id "SPBC27.04" ; colour "2" ; note "was annotated in error as ortholog of S. cerevisiae YNL250W, annotation removed 19.1.2005" ; db_xref "SPD:30/30B07" ; Alias "uds1" ; GO "GO:0000935; barrier septum
GO:0071937; barrier septum formation involved in cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Up regulated During Septation; db_xref=PMID:20460254; date=20100601 ||| term=species distribution, conserved in Fungi; date=20100601 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100601" ; primary_name "uds1" ; product "septation protein Uds1" ;
chromosome2 GeneDB CDS 1566403 1569561 . + . mRNA SPBC27.04 ; colour "2" ;
chromosome2 GeneDB CDS_parts 1569746 1570072 . + . mRNA SPBC27.05 ; db_xref "SPD:01/01G08" ; systematic_id "SPBC27.05" ; controlled_curation "term=genome organization, co- expressed with adjacent gene; date=20100606" ; colour "6" ; gene "SPBC27.05" ; product "dubious" ;
chromosome2 GeneDB CDS 1569746 1570072 . + . mRNA SPBC27.05 ; colour "6" ;
chromosome2 GeneDB 3'-UTR 1570204 1570446 . - . mRNA SPBC27.06c ; ID "SPBC27.06c" ; systematic_id "SPBC27.06c" ; note "mRNA from AU011009" ;
chromosome2 GeneDB CDS_parts 1570447 1570852 . - . mRNA SPBC27.06c ; systematic_id "SPBC27.06c" ; colour "10" ; gene "mgr2 ||| SPBC27.06c" ; Alias "mgr2" ; db_xref "SPD:03/03B05" ; GO "GO:0005739; mitochondrion
GO:0016020; membrane
GO:0031966; mitochondrial membrane" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL098C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mgr2" ; product "mitochondrial membrane protein Mgr2 (predicted)" ;
chromosome2 GeneDB CDS 1570447 1570775 . - . mRNA SPBC27.06c ; colour "10" ;
chromosome2 GeneDB CDS 1570819 1570852 . - . mRNA SPBC27.06c ; colour "10" ;
chromosome2 GeneDB misc_feature 1570776 1570789 . - . misc_feature unknown_1217 ; colour "6" ; note "ttaacactgaacag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1570776 1570818 . - . intron SPBC27.06c ; systematic_id "SPBC27.06c" ; note "Intron confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1570813 1570818 . - . misc_feature unknown_1218 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1570853 1571067 . - . mRNA SPBC27.06c ; ID "SPBC27.06c" ; systematic_id "SPBC27.06c" ; note "mRNA from SPD182" ;
chromosome2 GeneDB 3'-UTR 1571423 1571484 . - . mRNA SPBC27.08c ; ID "SPBC27.08c" ; systematic_id "SPBC27.08c" ; note "mRNA from AU011039" ;
chromosome2 GeneDB CDS_parts 1571485 1572957 . - . mRNA SPBC27.08c ; systematic_id "SPBC27.08c" ; colour "2" ; gene "sua1 ||| SPBC27.08c ||| SPBC28F2.01c" ; note "does not have adenylylsulfate kinase activity" ; Alias "sua1" ; obsolete_name "met3 ||| asp1" ; db_xref "SPD:23/23G03" ; synonym "SPBC28F2.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0004781; sulfate adenylyltransferase (ATP) activity
GO:0004781; sulfate adenylyltransferase (ATP) activity
GO:0019344; cysteine biosynthetic process
GO:0009086; methionine biosynthetic process
GO:0000103; sulfate assimilation" ; primary_name "sua1" ; product "sulfate adenylyltransferase" ; EC_number "2.7.7.4" ;
chromosome2 GeneDB CDS 1571485 1572957 . - . mRNA SPBC27.08c ; colour "2" ;
chromosome2 GeneDB misc_feature 1572261 1572374 . + . misc_feature unknown_1219 ; note "nominal overlap with cosmid c28F2" ;
chromosome2 GeneDB 5'-UTR 1572956 1572963 . - . mRNA SPBC27.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC27.08c" ; systematic_id "SPBC27.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1573272 1573581 . + . misc_RNA SPNCRNA.358 ; db_xref "PMID:18488015" ; synonym "SPNG1418" ; systematic_id "SPNCRNA.358" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 1574338 1574526 . + . mRNA SPBC28F2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.02" ; systematic_id "SPBC28F2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1574527 1575405 . + . mRNA SPBC28F2.02 ; systematic_id "SPBC28F2.02" ; colour "2" ; gene "mep33 ||| SPBC28F2.02" ; Alias "mep33" ; db_xref "SPD:11/11H06" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0005737; cytoplasm
GO:0006406; mRNA export from nucleus
GO:0007094; mitotic spindle checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-C3H1 type; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YOR091W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mep33" ; product "mRNA export protein Mep33" ;
chromosome2 GeneDB CDS 1574527 1575405 . + . mRNA SPBC28F2.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1575406 1575648 . + . mRNA SPBC28F2.02 ; ID "SPBC28F2.02" ; systematic_id "SPBC28F2.02" ; note "mRNA from SPD195" ;
chromosome2 GeneDB 5'-UTR 1576311 1576328 . + . mRNA SPBC28F2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.03" ; systematic_id "SPBC28F2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1576329 1576817 . + . mRNA SPBC28F2.03 ; systematic_id "SPBC28F2.03" ; colour "2" ; gene "ppi1 ||| cyp2 ||| SPBC28F2.03" ; note "cyp2 in PMID 11690648 is SPAC57A10.03 cyp1" ; Alias "ppi1" ; db_xref "SPD:31/31E03" ; synonym "cyp2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR155C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppi1" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp2" ; EC_number "5.2.1.8" ;
chromosome2 GeneDB CDS 1576329 1576817 . + . mRNA SPBC28F2.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1576818 1576867 . + . mRNA SPBC28F2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.03" ; systematic_id "SPBC28F2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1577407 1578009 . - . mRNA SPBC28F2.04c ; systematic_id "SPBC28F2.04c" ; colour "2" ; gene "cwf7 ||| spf27 ||| SPBC28F2.04c" ; Alias "cwf7" ; db_xref "SPD:42/42D04" ; synonym "spf27" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11884590; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=complementation, functionally complemented by S. cerevisiae SNT309; db_xref=PMID:12088152; date=19700101 ||| term=orthologous to S. cerevisiae YPR101W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf7" ; product "splicing factor Cwf7" ;
chromosome2 GeneDB CDS 1577407 1577936 . - . mRNA SPBC28F2.04c ; colour "2" ;
chromosome2 GeneDB CDS 1577976 1578009 . - . mRNA SPBC28F2.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 1577937 1577953 . - . misc_feature unknown_1220 ; colour "6" ; note "ctaatcaaattatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1577970 1577975 . - . misc_feature unknown_1221 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 1578175 1579005 . - . mRNA SPBC28F2.05c ; db_xref "SPD:22/22A10" ; systematic_id "SPBC28F2.05c" ; colour "10" ; GO "GO:0042843; D-xylose catabolism
GO:0019568; arabinose catabolism
GO:0004032; aldehyde reductase activity
GO:0004033; aldo-keto reductase activity
GO:0032866; xylose reductase activity
GO:0032867; arabinose reductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPBC28F2.05c" ; product "xylose and arabinose reductase (predicted)" ;
chromosome2 GeneDB CDS 1578175 1579005 . - . mRNA SPBC28F2.05c ; colour "10" ;
chromosome2 GeneDB CDS_parts 1579127 1579948 . - . mRNA SPBC28F2.06c ; systematic_id "SPBC28F2.06c" ; colour "2" ; gene "mdm12 ||| SPBC28F2.06c" ; Alias "mdm12" ; db_xref "SPD:31/31H11" ; GO "GO:0000001; mitochondrion inheritance
GO:0007005; mitochondrion organization and biogenesis
GO:0005741; mitochondrial outer membrane
GO:0000002; mitochondrial genome maintenance
GO:0032865; Mdm10/Mdm12/Mmm1 complex
GO:0045040; protein import into mitochondrial outer membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL009C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mdm12" ; product "Mdm10/Mdm12/Mmm1 complex subunit Mdm12" ;
chromosome2 GeneDB CDS 1579127 1579948 . - . mRNA SPBC28F2.06c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1579947 1580165 . - . mRNA SPBC28F2.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.06c" ; systematic_id "SPBC28F2.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1580605 1580687 . + . mRNA SPBC28F2.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.07" ; systematic_id "SPBC28F2.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1580688 1581587 . + . mRNA SPBC28F2.07 ; systematic_id "SPBC28F2.07" ; colour "2" ; gene "sfr1 ||| dds20 ||| mug13 ||| SPBC28F2.07" ; Alias "sfr1" ; db_xref "SPD:12/12D03" ; synonym "dds20 ||| mug13" ; GO "GO:0032798; Swi5-Sfr1 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0000730; DNA recombinase assembly
GO:0000724; double-strand break repair via homologous recombination
GO:0031573; intra-S DNA damage checkpoint
GO:0007533; mating type switching
GO:0045132; meiotic chromosome segregation
GO:0000709; meiotic joint molecule formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA recombination defects, gene conversion, reduced; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, long tract gene conversion, increased; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA damage checkpoint defects, S-phase; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=misc, focus formation at DNA damage sites, Sfr1-dependent; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YPL121C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, Sfr1 assembly at DNA damage sites is dependent on Rhp51; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=misc, accumulation and persistence of Sfr1 foci in rhp54 delta cells; db_xref=PMID:17304215; cv=misc; date=20090210" ; primary_name "sfr1" ; product "Swi five-dependent recombination repair protein Sfr1" ;
chromosome2 GeneDB CDS 1580688 1581587 . + . mRNA SPBC28F2.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1581588 1581758 . + . mRNA SPBC28F2.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.07" ; systematic_id "SPBC28F2.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1581869 1582102 . - . mRNA SPBC28F2.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.08c" ; systematic_id "SPBC28F2.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1582103 1584244 . - . mRNA SPBC28F2.08c ; db_xref "SPD:37/37E08" ; systematic_id "SPBC28F2.08c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0030433; ER-associated protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SEL1 repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR207W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC28F2.08c" ; product "HRD ubiquitin ligase complex subunit (predicted)" ;
chromosome2 GeneDB CDS 1582103 1584244 . - . mRNA SPBC28F2.08c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1584243 1584287 . - . mRNA SPBC28F2.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.08c" ; systematic_id "SPBC28F2.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1585222 1586417 . + . mRNA SPBC28F2.09 ; systematic_id "SPBC28F2.09" ; colour "7" ; gene "SPBC28F2.09 ||| toa1" ; Alias "toa1" ; db_xref "SPD:19/19B02" ; GO "GO:0016251; general RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0005672; transcription factor TFIIA complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR194C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "toa1" ; product "transcription factor TFIIA complex large subunit Toa1 (predicted)" ;
chromosome2 GeneDB CDS 1585222 1585239 . + . mRNA SPBC28F2.09 ; colour "7" ;
chromosome2 GeneDB CDS 1585285 1585386 . + . mRNA SPBC28F2.09 ; colour "7" ;
chromosome2 GeneDB CDS 1585428 1586417 . + . mRNA SPBC28F2.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 1585240 1585245 . + . misc_feature unknown_1222 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1585268 1585284 . + . misc_feature unknown_1223 ; colour "6" ; note "ctaatgtttttatcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1585387 1585392 . + . misc_feature unknown_1224 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1585416 1585427 . + . misc_feature unknown_1225 ; colour "6" ; note "ctaataaaacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1586418 1586602 . + . mRNA SPBC28F2.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.09" ; systematic_id "SPBC28F2.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1586653 1586686 . - . mRNA SPBC28F2.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.10c" ; systematic_id "SPBC28F2.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1586687 1588342 . - . mRNA SPBC28F2.10c ; systematic_id "SPBC28F2.10c" ; colour "2" ; gene "SPBC28F2.10c ||| ngg1 ||| ada3" ; Alias "ngg1" ; obsolete_name "kap1" ; db_xref "SPD:34/34G03" ; synonym "ada3" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006366; transcription from RNA polymerase II promoter
GO:0044154; histone H3-K14 acetylation
GO:0043971; histone H3-K18 acetylation
GO:0043972; histone H3-K23 acetylation
GO:0043970; histone H3-K9 acetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR176W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19056896; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "ngg1" ; product "SAGA complex subunit Ngg1" ;
chromosome2 GeneDB CDS 1586687 1588342 . - . mRNA SPBC28F2.10c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1588341 1588413 . - . mRNA SPBC28F2.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.10c" ; systematic_id "SPBC28F2.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1589237 1589358 . + . mRNA SPBC28F2.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.11" ; systematic_id "SPBC28F2.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1589359 1590483 . + . mRNA SPBC28F2.11 ; db_xref "SPD:17/17F10" ; systematic_id "SPBC28F2.11" ; colour "10" ; GO "GO:0003677; DNA binding
GO:0006916; anti-apoptosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog (cannot be distinguished); date=19700101 ||| term=human HMGB1 ortholog; db_xref=PMID:18701708; date=20081001 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC28F2.11 ||| hmg1-2" ; product "HMG box protein" ;
chromosome2 GeneDB CDS 1589359 1589388 . + . mRNA SPBC28F2.11 ; colour "10" ;
chromosome2 GeneDB CDS 1589581 1590483 . + . mRNA SPBC28F2.11 ; colour "10" ;
chromosome2 GeneDB misc_feature 1589389 1589394 . + . misc_feature unknown_1226 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1589561 1589580 . + . misc_feature unknown_1227 ; colour "6" ; note "ctaacaaattgccgtcttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1590484 1590835 . + . mRNA SPBC28F2.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.11" ; systematic_id "SPBC28F2.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1591154 1596710 . + . mRNA SPBC28F2.12 ; systematic_id "SPBC28F2.12" ; colour "2" ; gene "rpb1 ||| SPBC28F2.12" ; Alias "rpb1" ; db_xref "SPD:41/41B01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL140C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; residue=CTD,Ser2; cv=pt_mod; evidence=IDA; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; residue=CTD,Ser5; cv=pt_mod; evidence=IDA; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; residue=CTD,Ser2|CTD,Ser5; cv=pt_mod; evidence=IDA; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target of lsk1/Lsc1 complex; residue=Ser2; db_xref=PMID:17502918; date=20100222 ||| term=target of Lsk1; db_xref=PMID:19328067; residue=CTD,Ser2; date=20100923 ||| term=target of Msc6; qualifier=phosphorylated_by; db_xref=PMID:19328067; residue=CTD,Ser5; date=20100923 ||| term=target of Cdk9; qualifier=phosphorylated_by; db_xref=PMID:19328067; residue=CTD,Ser2|CTD,Ser5; date=20100923" ; GO "GO:0006366; transcription from RNA polymerase II promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0003677; DNA binding
GO:0005665; DNA-directed RNA polymerase II, core complex
GO:0005515; protein binding
GO:0005515; protein binding" ; primary_name "rpb1" ; product "RNA polymerase II large subunit Rpb1" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB CDS 1591154 1591168 . + . mRNA SPBC28F2.12 ; colour "2" ;
chromosome2 GeneDB CDS 1591204 1591229 . + . mRNA SPBC28F2.12 ; colour "2" ;
chromosome2 GeneDB CDS 1591270 1591342 . + . mRNA SPBC28F2.12 ; colour "2" ;
chromosome2 GeneDB CDS 1591382 1591457 . + . mRNA SPBC28F2.12 ; colour "2" ;
chromosome2 GeneDB CDS 1591503 1591562 . + . mRNA SPBC28F2.12 ; colour "2" ;
chromosome2 GeneDB CDS 1591655 1591761 . + . mRNA SPBC28F2.12 ; colour "2" ;
chromosome2 GeneDB CDS 1591809 1596710 . + . mRNA SPBC28F2.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 1591169 1591174 . + . misc_feature unknown_1228 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1591193 1591203 . + . misc_feature unknown_1229 ; colour "6" ; note "ctaatacatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1591230 1591235 . + . misc_feature unknown_1230 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1591257 1591269 . + . misc_feature unknown_1231 ; colour "6" ; note "ctaacagtattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1591343 1591348 . + . misc_feature unknown_1232 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1591458 1591463 . + . misc_feature unknown_1233 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1591486 1591502 . + . misc_feature unknown_1234 ; colour "6" ; note "ctcacacattttgtaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1591563 1591568 . + . misc_feature unknown_1235 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1591641 1591654 . + . misc_feature unknown_1236 ; colour "6" ; note "ctaacacctttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1591762 1591767 . + . misc_feature unknown_1237 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1591795 1591808 . + . misc_feature unknown_1238 ; colour "6" ; note "ctaacattataaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1596711 1596774 . + . mRNA SPBC28F2.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28F2.12" ; systematic_id "SPBC28F2.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 1597996 1598069 . - . tRNA SPBTRNAASN.01 ; systematic_id "SPBTRNAASN.01" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033449; GTT codon-amino acid adaptor activity" ; gene "SPBTRNAASN.01" ; product "tRNA Asparagine" ; note "tRNA Asn anticodon GTT, Cove score 86.64" ;
chromosome2 GeneDB tRNA 1598075 1598155 . - . tRNA SPBTRNAMET.05 ; systematic_id "SPBTRNAMET.05" ; GO "GO:0005737; cytoplasm
GO:0006412; translation
GO:0033425; CAT codon-amino acid adaptor activity" ; gene "SPBTRNAMET.05" ; product "tRNA Methionine" ; note "tRNA Met anticodon CAT, Cove score 55.15" ;
chromosome2 GeneDB intron 1598111 1598117 . - . intron unknown_1239 ; note "intron tRNA Met anticodon CAT" ;
chromosome2 GeneDB tRNA 1598511 1598594 . + . tRNA SPBTRNATYR.02 ; systematic_id "SPBTRNATYR.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033451; GTA codon-amino acid adaptor activity" ; gene "SPBTRNATYR.02" ; product "tRNA Tyrosine" ; note "tRNA Tyr anticodon GTA, Cove score 70.26" ;
chromosome2 GeneDB intron 1598549 1598558 . + . intron unknown_1240 ; note "intron tRNA Tyr anticodon GTA" ;
chromosome2 GeneDB tRNA 1598745 1598845 . - . tRNA SPBTRNALEU.06 ; systematic_id "SPBTRNALEU.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033427; CAA codon-amino acid adaptor activity" ; gene "SPBTRNALEU.06" ; product "tRNA Leucine" ; note "tRNA Leu anticodon CAA, Cove score 56.07" ;
chromosome2 GeneDB intron 1598789 1598807 . - . intron unknown_1241 ; note "intron tRNA Leu anticodon CAA" ;
chromosome2 GeneDB tRNA 1599337 1599407 . - . tRNA SPBTRNAGLY.07 ; systematic_id "SPBTRNAGLY.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033454; GCC codon-amino acid adaptor activity" ; gene "SPBTRNAGLY.07" ; product "tRNA Glycine" ; note "tRNA Gly anticodon GCC, Cove score 72.94" ;
chromosome2 GeneDB tRNA 1599706 1599788 . + . tRNA SPBTRNALYS.07 ; systematic_id "SPBTRNALYS.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033417; CTT codon-amino acid adaptor activity" ; gene "SPBTRNALYS.07" ; product "tRNA Lysine" ; note "tRNA Lys anticodon CTT, Cove score 74.83" ;
chromosome2 GeneDB intron 1599745 1599752 . + . intron unknown_1242 ; note "intron tRNA Lys anticodon CTT" ;
chromosome2 GeneDB tRNA 1600086 1600159 . + . tRNA SPBTRNAILE.05 ; systematic_id "SPBTRNAILE.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033441; AAT codon-amino acid adaptor activity" ; gene "SPBTRNAILE.05" ; product "tRNA Isoleucine" ; note "tRNA Ile anticodon AAT, Cove score 66.44" ;
chromosome2 GeneDB tRNA 1600233 1600306 . - . tRNA SPBTRNAALA.08 ; systematic_id "SPBTRNAALA.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033446; AGC codon-amino acid adaptor activity" ; gene "SPBTRNAALA.08" ; product "tRNA Alanine" ; note "tRNA Ala anticodon AGC, Cove score 67.24" ;
chromosome2 GeneDB tRNA 1600967 1601049 . - . tRNA SPBTRNAVAL.05 ; systematic_id "SPBTRNAVAL.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033442; AAC codon-amino acid adaptor activity" ; gene "SPBTRNAVAL.05" ; product "tRNA Valine" ; note "tRNA Val anticodon AAC, Cove score 64.30" ;
chromosome2 GeneDB intron 1601003 1601011 . - . intron unknown_1243 ; note "intron tRNA Val anticodon AAC" ;
chromosome2 GeneDB tRNA 1601491 1601562 . - . tRNA SPBTRNAGLU.06 ; systematic_id "SPBTRNAGLU.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033402; TTC codon-amino acid adaptor activity" ; gene "SPBTRNAGLU.06" ; product "tRNA Glutamic acid" ; note "tRNA Glu anticodon TTC, Cove score 62.18" ;
chromosome2 GeneDB tRNA 1602188 1602260 . + . tRNA SPBTRNAARG.06 ; systematic_id "SPBTRNAARG.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033440; ACG codon-amino acid adaptor activity" ; gene "SPBTRNAARG.06" ; product "tRNA Arginine" ; note "tRNA Arg anticodon ACG, Cove score 75.46" ;
chromosome2 GeneDB repeat_region 1602264 1603318 . - . repeat_region unknown_1244 ; colour "1" ; note "similar to IMR repeat, not marked on Nature publication map, added May 2002 VW" ;
chromosome2 GeneDB tRNA 1602347 1602417 . - . tRNA SPBTRNAASP.03 ; systematic_id "SPBTRNAASP.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033450; GTC codon-amino acid adaptor activity" ; gene "SPBTRNAASP.03" ; product "tRNA Aspartic acid" ; note "tRNA Asp anticodon GTC, Cove score 70.49" ;
chromosome2 GeneDB misc_RNA 1602773 1604997 . + . misc_RNA SPNCRNA.359 ; db_xref "PMID:18488015" ; synonym "SPNG1422" ; systematic_id "SPNCRNA.359" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB repeat_region 1603692 1604943 . - . repeat_region unknown_1245 ; colour "1" ; note "similar to IMR repeat, not marked on Nature publication map, added May 2002 VW" ;
chromosome2 GeneDB repeat_region 1604786 1609649 . - . repeat_region unknown_1246 ; colour "3" ; note "dgII repeat" ;
chromosome2 GeneDB misc_RNA 1606372 1609066 . + . misc_RNA SPNCRNA.360 ; db_xref "PMID:18488015" ; synonym "SPNG1425" ; systematic_id "SPNCRNA.360" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB repeat_region 1609650 1610040 . - . repeat_region unknown_1247 ; colour "7" ; note "cen253 Yeast centromere CEN2 repetitive DNA PSS253, between dhIIa and dgIIa" ;
chromosome2 GeneDB misc_RNA 1609703 1610790 . + . misc_RNA SPNCRNA.361 ; db_xref "PMID:18488015" ; synonym "SPNG1428" ; systematic_id "SPNCRNA.361" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB repeat_region 1610041 1611580 . - . repeat_region unknown_1248 ; colour "2" ; note "dhII repeat partial" ;
chromosome2 GeneDB misc_RNA 1611106 1612940 . + . misc_RNA SPNCRNA.362 ; db_xref "PMID:18488015" ; synonym "SPNG1430" ; systematic_id "SPNCRNA.362" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB repeat_region 1611467 1613530 . + . repeat_region unknown_1249 ; colour "2" ; note "dhII repeat" ;
chromosome2 GeneDB misc_RNA 1613127 1613220 . + . misc_RNA SPNCRNA.363 ; db_xref "PMID:18488015" ; synonym "SPNG1431" ; systematic_id "SPNCRNA.363" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB conflict 1613134 1613153 . + . conflict unknown_1250 ; citation "[1]" ; note "In the consensus sequence pB36C4.con between positions 1668 and 1687 (inclusive) there are 10 copies of a TA repeat. This number of repeats was seen in 4 x pUC subclones, in 1 x pUC subclone there were 13 copies" ;
chromosome2 GeneDB misc_RNA 1613277 1614347 . + . misc_RNA SPNCRNA.364 ; db_xref "PMID:18488015" ; synonym "SPNG1432" ; systematic_id "SPNCRNA.364" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB repeat_region 1613530 1614150 . + . repeat_region unknown_1251 ; colour "1" ; note "distal part of imr repeated" ;
chromosome2 GeneDB repeat_region 1614151 1616570 . + . repeat_region unknown_1252 ; colour "2" ;
chromosome2 GeneDB misc_RNA 1614384 1615655 . + . misc_RNA SPNCRNA.365 ; db_xref "PMID:18488015" ; synonym "SPNG1433" ; systematic_id "SPNCRNA.365" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB repeat_region 1616671 1620806 . + . repeat_region unknown_1253 ; colour "1" ; note "imr2r" ;
chromosome2 GeneDB misc_RNA 1617399 1617921 . + . misc_RNA SPNCRNA.366 ; db_xref "PMID:18488015" ; synonym "SPNG1438" ; systematic_id "SPNCRNA.366" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB tRNA 1618293 1618366 . + . tRNA SPBTRNAILE.06 ; systematic_id "SPBTRNAILE.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033441; AAT codon-amino acid adaptor activity" ; gene "SPBTRNAILE.06" ; product "tRNA Isoleucine" ; note "tRNA Ile anticodon AAT, Cove score 52.87" ;
chromosome2 GeneDB tRNA 1618440 1618513 . - . tRNA SPBTRNAALA.09 ; systematic_id "SPBTRNAALA.09" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033446; AGC codon-amino acid adaptor activity" ; gene "SPBTRNAALA.09" ; product "tRNA Alanine" ; note "tRNA Ala anticodon AGC, Cove score 56.39" ;
chromosome2 GeneDB tRNA 1619174 1619256 . - . tRNA SPBTRNAVAL.06 ; systematic_id "SPBTRNAVAL.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033442; AAC codon-amino acid adaptor activity" ; gene "SPBTRNAVAL.06" ; product "tRNA Valine" ; note "tRNA Pseudo VAL anticodon AAC, Cove score 40.82" ;
chromosome2 GeneDB misc_RNA 1619340 1619803 . + . misc_RNA SPNCRNA.367 ; db_xref "PMID:18488015" ; synonym "SPNG1440" ; systematic_id "SPNCRNA.367" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 1619808 1620391 . + . misc_RNA SPNCRNA.368 ; db_xref "PMID:18488015" ; synonym "SPNG1441" ; systematic_id "SPNCRNA.368" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 1620799 1620937 . + . misc_RNA SPNCRNA.369 ; db_xref "PMID:18488015" ; synonym "SPNG1442" ; systematic_id "SPNCRNA.369" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB repeat_region 1620807 1624737 . + . repeat_region unknown_1254 ; colour "4" ; note "cnt2" ;
chromosome2 GeneDB misc_feature 1624515 1624737 . + . misc_feature unknown_1255 ; note "nominal overlap with SPBC633 S. pombe chromosome 2" ;
chromosome2 GeneDB repeat_region 1624515 1627609 . + . repeat_region unknown_1256 ; colour "4" ; note "cnt2" ;
chromosome2 GeneDB misc_RNA 1625750 1626227 . + . misc_RNA SPNCRNA.370 ; db_xref "PMID:18488015" ; synonym "SPNG1451" ; systematic_id "SPNCRNA.370" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB repeat_region 1627610 1631932 . + . repeat_region unknown_1257 ; colour "1" ; note "imr2L" ;
chromosome2 GeneDB tRNA 1629159 1629241 . + . tRNA SPBTRNAVAL.07 ; systematic_id "SPBTRNAVAL.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033442; AAC codon-amino acid adaptor activity" ; gene "SPBTRNAVAL.07" ; product "tRNA Valine" ; note "tRNA Val anticodon AAC, Cove score 64.30" ;
chromosome2 GeneDB intron 1629197 1629205 . + . intron unknown_1258 ; note "intron tRNA Val anticodon AAC" ;
chromosome2 GeneDB tRNA 1629902 1629975 . + . tRNA SPBTRNAALA.10 ; systematic_id "SPBTRNAALA.10" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033446; AGC codon-amino acid adaptor activity" ; gene "SPBTRNAALA.10" ; product "tRNA Alanine" ; note "tRNA Ala anticodon AGC, Cove score 67.24" ;
chromosome2 GeneDB tRNA 1630049 1630122 . - . tRNA SPBTRNAILE.07 ; systematic_id "SPBTRNAILE.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033441; AAT codon-amino acid adaptor activity" ; gene "SPBTRNAILE.07" ; product "tRNA Isoleucine" ; note "tRNA Ile anticodon AAT, Cove score 66.44" ;
chromosome2 GeneDB repeat_region 1631933 1634352 . + . repeat_region unknown_1259 ; colour "2" ; note "dhII repeat partial" ;
chromosome2 GeneDB misc_feature 1634252 1634352 . + . misc_feature unknown_1260 ; note "nominal overlap with SPBC21B10 S. pombe chromosome 2" ;
chromosome2 GeneDB repeat_region 1634252 1637841 . + . repeat_region unknown_1261 ; colour "2" ; note "dhII repeat partial" ;
chromosome2 GeneDB misc_RNA 1636393 1636776 . + . misc_RNA SPNCRNA.371 ; db_xref "PMID:18488015" ; synonym "SPNG1464" ; systematic_id "SPNCRNA.371" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 1637171 1639664 . + . misc_RNA SPNCRNA.372 ; db_xref "PMID:18488015" ; synonym "SPNG1466" ; systematic_id "SPNCRNA.372" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB repeat_region 1637842 1638232 . + . repeat_region unknown_1262 ; colour "12" ; note "cen253 Yeast centromere CEN2 repetitive DNA PSS253, between dhIIa and dgIIa" ;
chromosome2 GeneDB repeat_region 1638230 1644747 . + . repeat_region unknown_1263 ; colour "3" ; note "dgII repeat" ;
chromosome2 GeneDB misc_RNA 1640114 1641543 . + . misc_RNA SPNCRNA.373 ; db_xref "PMID:18488015" ; synonym "SPNG1467" ; systematic_id "SPNCRNA.373" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB tRNA 1643849 1643932 . + . tRNA SPBTRNATYR.03 ; systematic_id "SPBTRNATYR.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033451; GTA codon-amino acid adaptor activity" ; gene "SPBTRNATYR.03" ; product "tRNA Tyrosine" ; note "tRNA Tyr anticodon GTA, Cove score 70.26" ;
chromosome2 GeneDB intron 1643887 1643896 . + . intron unknown_1264 ; note "intron tRNA Tyr anticodon GTA" ;
chromosome2 GeneDB tRNA 1644083 1644183 . - . tRNA SPBTRNALEU.07 ; systematic_id "SPBTRNALEU.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033427; CAA codon-amino acid adaptor activity" ; gene "SPBTRNALEU.07" ; product "tRNA Leucine" ; note "tRNA Leu anticodon CAA, Cove score 56.07" ;
chromosome2 GeneDB intron 1644127 1644145 . - . intron unknown_1265 ; note "intron tRNA Leu anticodon CAA" ;
chromosome2 GeneDB tRNA 1644675 1644745 . - . tRNA SPBTRNAGLY.08 ; systematic_id "SPBTRNAGLY.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033454; GCC codon-amino acid adaptor activity" ; gene "SPBTRNAGLY.08" ; product "tRNA Glycine" ; note "tRNA Gly anticodon GCC, Cove score 72.94" ;
chromosome2 GeneDB tRNA 1645044 1645126 . + . tRNA SPBTRNALYS.08 ; systematic_id "SPBTRNALYS.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033417; CTT codon-amino acid adaptor activity" ; product "tRNA Lysine" ; note "tRNA Lys anticodon CTT, Cove score 74.83" ;
chromosome2 GeneDB intron 1645083 1645090 . + . intron unknown_1266 ; note "intron tRNA Lys anticodon CTT" ;
chromosome2 GeneDB tRNA 1645424 1645497 . + . tRNA SPBTRNAILE.08 ; systematic_id "SPBTRNAILE.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033441; AAT codon-amino acid adaptor activity" ; gene "SPBTRNAILE.08" ; product "tRNA Isoleucine" ; note "tRNA Ile anticodon AAT, Cove score 66.44" ;
chromosome2 GeneDB tRNA 1645571 1645644 . - . tRNA SPBTRNAALA.11 ; systematic_id "SPBTRNAALA.11" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033446; AGC codon-amino acid adaptor activity" ; gene "SPBTRNAALA.11" ; product "tRNA Alanine" ; note "tRNA Ala anticodon AGC, Cove score 67.24" ;
chromosome2 GeneDB tRNA 1646305 1646387 . - . tRNA SPBTRNAVAL.08 ; systematic_id "SPBTRNAVAL.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033442; AAC codon-amino acid adaptor activity" ; gene "SPBTRNAVAL.08" ; product "tRNA Valine" ; note "tRNA Val anticodon AAC, Cove score 64.30" ;
chromosome2 GeneDB intron 1646341 1646349 . - . intron unknown_1267 ; note "intron tRNA Val anticodon AAC" ;
chromosome2 GeneDB tRNA 1646829 1646900 . - . tRNA SPBTRNAGLU.07 ; systematic_id "SPBTRNAGLU.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033402; TTC codon-amino acid adaptor activity" ; gene "SPBTRNAGLU.07" ; product "tRNA Glutamic acid" ; note "tRNA Glu anticodon TTC, Cove score 62.18" ;
chromosome2 GeneDB tRNA 1647283 1647355 . - . tRNA SPBTRNAARG.07 ; systematic_id "SPBTRNAARG.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033440; ACG codon-amino acid adaptor activity" ; gene "SPBTRNAARG.07" ; product "tRNA Arginine" ; note "tRNA Arg anticodon ACG, Cove score 75.46" ;
chromosome2 GeneDB misc_RNA 1647478 1647927 . + . misc_RNA SPNCRNA.374 ; db_xref "PMID:18488015" ; synonym "SPNG1473" ; systematic_id "SPNCRNA.374" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 1648230 1648234 . + . mRNA SPBC21B10.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.13c" ; systematic_id "SPBC21B10.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1648235 1648840 . + . mRNA SPBC21B10.13c ; systematic_id "SPBC21B10.13c" ; colour "2" ; db_xref "SPD:06/06G05" ; Alias "yox1" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043565; sequence-specific DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0016566; specific trasncriptional repressor activity
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0010553; negative regulation of gene specific transcription from RNA polymerase II promoter
GO:0071930; negative regulation of transcription involved in G1/S phase of mitotic cell cycle
GO:0030907; MBF transcription complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth normal; cv=phenotype; qualifier=deletion; db_xref=PMID:19714215; date=20100104 ||| term=phenotype, septation defects; qualifier=septation_index_increased|deletion; cv=phenotype; db_xref=PMID:19714215; date=20100104 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; qualifier=deletion; db_xref=PMID:19714215; date=20100104 ||| term=phenotype, expression of MBF target genes increased; cv=phenotype; qualifier=deletion; db_xref=PMID:19714215; date=20100104 ||| term=phenotype, periodic cell-cycle expression, abolished; cv=phenotype; qualifier=deletion; db_xref=PMID:19714215; date=20100104 ||| term=orthologous to S. cerevisiae YML027W and YDR451C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, transcriptionally induced by MBF complex; cv=gene_ex; db_xref=PMID:19714215; date=20100104 ||| term=gene expression, transcriptionally regulates MBF target genes; cv=gene_ex; db_xref=PMID:19714215; date=20100104 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19714215; date=20100104 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; db_xref=PMID:19714215; date=20100122 ||| term=target of MBF; db_xref=PMID:19714215; date=20100104" ; primary_name "yox1" ; product "MBF complex negative regulatory component Yox1" ;
chromosome2 GeneDB CDS 1648235 1648840 . + . mRNA SPBC21B10.13c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1648948 1649037 . - . mRNA SPBC21B10.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.12" ; systematic_id "SPBC21B10.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1649038 1649671 . - . mRNA SPBC21B10.12 ; systematic_id "SPBC21B10.12" ; colour "2" ; gene "rec6 ||| SPBC21B10.12" ; Alias "rec6" ; db_xref "SPD:40/40A02" ; GO "GO:0007131; meiotic recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "rec6" ; product "meiotic recombination protein Rec6" ;
chromosome2 GeneDB CDS 1649038 1649472 . - . mRNA SPBC21B10.12 ; colour "2" ;
chromosome2 GeneDB CDS 1649558 1649671 . - . mRNA SPBC21B10.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 1649473 1649487 . - . misc_feature unknown_1268 ; colour "6" ; note "ctgactttcttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1649552 1649557 . - . misc_feature unknown_1269 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 1649990 1650288 . - . mRNA SPBC21B10.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.11" ; systematic_id "SPBC21B10.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1650289 1650550 . - . mRNA SPBC21B10.11 ; systematic_id "SPBC21B10.11" ; colour "7" ; gene "dpm2 ||| SPBC21B10.11" ; Alias "dpm2" ; db_xref "SPD:01/01B12" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006487; protein amino acid N-linked glycosylation
GO:0006493; protein amino acid O-linked glycosylation
GO:0006506; GPI anchor biosynthesis
GO:0004582; dolichyl-phosphate beta-D- mannosyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dpm2" ; product "dolichol-phosphate mannosyltransferase subunit 2 (predicted)" ;
chromosome2 GeneDB CDS 1650289 1650447 . - . mRNA SPBC21B10.11 ; colour "7" ;
chromosome2 GeneDB CDS 1650491 1650550 . - . mRNA SPBC21B10.11 ; colour "7" ;
chromosome2 GeneDB misc_feature 1650448 1650458 . - . misc_feature unknown_1270 ; colour "6" ; note "ttaatcattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1650485 1650490 . - . misc_feature unknown_1271 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1650549 1650658 . - . mRNA SPBC21B10.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.11" ; systematic_id "SPBC21B10.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1651012 1651021 . - . mRNA SPBC21B10.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.10" ; systematic_id "SPBC21B10.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1651022 1651810 . - . mRNA SPBC21B10.10 ; systematic_id "SPBC21B10.10" ; colour "7" ; gene "rps402 ||| rps4-2 ||| SPBC21B10.10" ; Alias "rps402" ; db_xref "SPD:43/43C02" ; synonym "rps4-2" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR145C and YHR203C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps402" ; product "40S ribosomal protein S4 (predicted)" ;
chromosome2 GeneDB CDS 1651022 1651810 . - . mRNA SPBC21B10.10 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1651809 1651811 . - . mRNA SPBC21B10.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.10" ; systematic_id "SPBC21B10.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1652051 1652489 . + . misc_RNA SPNCRNA.41 ; Alias "prl41" ; db_xref "EMBL:AB084853 ||| PMID:12597277" ; systematic_id "SPNCRNA.41" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl41" ; gene "prl41 ||| SPNCRNA.41" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB 3'-UTR 1652135 1652518 . - . mRNA SPBC21B10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.09" ; systematic_id "SPBC21B10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1652519 1654275 . - . mRNA SPBC21B10.09 ; db_xref "SPD:36/36B02" ; systematic_id "SPBC21B10.09" ; colour "7" ; GO "GO:0008521; acetyl-CoA transmembrane transporter activity
GO:0035348; acetyl-CoA transmembrane transport
GO:0016020; membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR220C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC21B10.09" ; product "acetyl-CoA transporter (predicted)" ;
chromosome2 GeneDB CDS 1652519 1652836 . - . mRNA SPBC21B10.09 ; colour "7" ;
chromosome2 GeneDB CDS 1652883 1653292 . - . mRNA SPBC21B10.09 ; colour "7" ;
chromosome2 GeneDB CDS 1653337 1653993 . - . mRNA SPBC21B10.09 ; colour "7" ;
chromosome2 GeneDB CDS 1654101 1654275 . - . mRNA SPBC21B10.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 1652837 1652852 . - . misc_feature unknown_1272 ; colour "6" ; note "ctaatcaattaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1652877 1652882 . - . misc_feature unknown_1273 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1653293 1653309 . - . misc_feature unknown_1274 ; colour "6" ; note "ttaaccttttacgatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1653331 1653336 . - . misc_feature unknown_1275 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1653994 1654006 . - . misc_feature unknown_1276 ; colour "6" ; note "ttaacaattcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1654095 1654100 . - . misc_feature unknown_1277 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1654274 1654451 . - . mRNA SPBC21B10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.09" ; systematic_id "SPBC21B10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1655937 1655945 . + . mRNA SPBC21B10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.08c" ; systematic_id "SPBC21B10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1655946 1656777 . + . mRNA SPBC21B10.08c ; db_xref "SPD:10/10G06" ; systematic_id "SPBC21B10.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC21B10.08c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1655946 1656014 . + . mRNA SPBC21B10.08c ; colour "8" ;
chromosome2 GeneDB CDS 1656250 1656777 . + . mRNA SPBC21B10.08c ; colour "8" ;
chromosome2 GeneDB misc_feature 1656015 1656020 . + . misc_feature unknown_1278 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB intron 1656015 1656249 . + . intron SPBC21B10.08c ; systematic_id "SPBC21B10.08c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1656234 1656249 . + . misc_feature unknown_1279 ; colour "6" ; note "ctaactatatgtacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1656778 1656928 . + . mRNA SPBC21B10.08c ; ID "SPBC21B10.08c" ; systematic_id "SPBC21B10.08c" ; note "mRNA from SPD181" ;
chromosome2 GeneDB 3'-UTR 1657141 1657185 . - . mRNA SPBC21B10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.07" ; systematic_id "SPBC21B10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1657186 1658445 . - . mRNA SPBC21B10.07 ; db_xref "SPD:20/20B05" ; systematic_id "SPBC21B10.07" ; colour "7" ; GO "GO:0009277; cell wall (sensu Fungi)
GO:0044275; cellular carbohydrate catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR189C and YLR213C and YEL040W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC21B10.07" ; product "glycosyl hydrolase family 16 (predicted)" ;
chromosome2 GeneDB CDS 1657186 1658445 . - . mRNA SPBC21B10.07 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1658444 1659073 . - . mRNA SPBC21B10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.07" ; systematic_id "SPBC21B10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1660723 1660862 . + . mRNA SPBC21B10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.06c" ; systematic_id "SPBC21B10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1660863 1662389 . + . mRNA SPBC21B10.06c ; systematic_id "SPBC21B10.06c" ; colour "7" ; gene "SPBC21B10.06c" ; Alias "inp2" ; db_xref "SPD:24/24G08" ; GO "GO:0045033; peroxisome inheritance
GO:0005779; integral to peroxisomal membrane
GO:0017022; myosin binding
GO:0030048; actin filament-based movement
GO:0043495; protein anchor" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20091018 ||| term=species distribution, conserved in Vertebrates; date=20091018 ||| term=species distribution, conserved in Metazoa; date=20091018 ||| term=species distribution, conserved in Eukaryotes only; date=20091018 ||| term=orthologous to S. cerevisiae YMR163C; date=20091018 ||| term=name description, INheritance of Peroxisomes; cv=name_description; date=20091018 ||| term=vezatin family; db_xref=Pfam:PF12632; date=20091020" ; primary_name "inp2" ; product "myosin binding vezatin family protein involved in peroxisome inheritance Inp2 (predicted)" ;
chromosome2 GeneDB CDS 1660863 1660893 . + . mRNA SPBC21B10.06c ; colour "7" ;
chromosome2 GeneDB CDS 1660954 1661066 . + . mRNA SPBC21B10.06c ; colour "7" ;
chromosome2 GeneDB CDS 1661121 1662389 . + . mRNA SPBC21B10.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 1660894 1660899 . + . misc_feature unknown_1280 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1660937 1660953 . + . misc_feature unknown_1281 ; colour "6" ; note "ctgacacaatacactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1661067 1661072 . + . misc_feature unknown_1282 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1661104 1661120 . + . misc_feature unknown_1283 ; colour "6" ; note "ctaatgaacattttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1662390 1662644 . + . mRNA SPBC21B10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.06c" ; systematic_id "SPBC21B10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1662947 1663891 . + . mRNA SPBC21B10.05c ; systematic_id "SPBC21B10.05c" ; colour "2" ; gene "pop3 ||| wat1 ||| SPBC21B10.05c" ; Alias "pop3" ; db_xref "SPD:40/40B09" ; synonym "wat1" ; GO "GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0006397; mRNA processing
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0031931; TORC 1 complex
GO:0031931; TORC 1 complex
GO:0031929; TOR signaling pathway
GO:0031932; TORC 2 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL006W; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; evidence=IDA; date=20071228 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213" ; primary_name "pop3" ; product "WD repeat protein Pop3" ;
chromosome2 GeneDB CDS 1662947 1663891 . + . mRNA SPBC21B10.05c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1663892 1664181 . + . mRNA SPBC21B10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.05c" ; systematic_id "SPBC21B10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1664541 1664581 . + . mRNA SPBC21B10.04c ; ID "SPBC21B10.04c" ; systematic_id "SPBC21B10.04c" ; note "mRNA from AF087832" ;
chromosome2 GeneDB CDS_parts 1664582 1664950 . + . mRNA SPBC21B10.04c ; systematic_id "SPBC21B10.04c" ; colour "2" ; gene "nrf1 ||| SPBC21B10.04c" ; Alias "nrf1" ; db_xref "SPD:31/31C09" ; GO "GO:0032153; cell division site
GO:0000329; vacuolar membrane
GO:0005083; small GTPase regulator activity
GO:0007163; regulation of establishment and/or maintenance of cell polarity
GO:0007264; small GTPase mediated signal transduction
GO:0042144; vacuole fusion, non-autophagic" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER072W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "nrf1" ; product "GTPase regulator Nrf1" ;
chromosome2 GeneDB CDS 1664582 1664950 . + . mRNA SPBC21B10.04c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1664951 1665121 . + . mRNA SPBC21B10.04c ; ID "SPBC21B10.04c" ; systematic_id "SPBC21B10.04c" ; note "mRNA from AF087832" ;
chromosome2 GeneDB 5'-UTR 1666988 1667058 . + . mRNA SPBC21B10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.03c" ; systematic_id "SPBC21B10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1667059 1669434 . + . mRNA SPBC21B10.03c ; db_xref "SPD:28/28E04" ; systematic_id "SPBC21B10.03c" ; colour "7" ; GO "GO:0006378; mRNA polyadenylation
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0006417; regulation of translation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR178C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC21B10.03c" ; product "ataxin-2 homolog (predicted)" ;
chromosome2 GeneDB CDS 1667059 1669434 . + . mRNA SPBC21B10.03c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1669435 1669628 . + . mRNA SPBC21B10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21B10.03c" ; systematic_id "SPBC21B10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1669719 1670144 . - . mRNA SPBC21B10.02 ; db_xref "SPD:05/05B10" ; systematic_id "SPBC21B10.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC21B10.02" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1669719 1670144 . - . mRNA SPBC21B10.02 ; colour "8" ;
chromosome2 GeneDB 5'-UTR 1670449 1670581 . + . mRNA SPBC19C2.01 ; ID "SPBC19C2.01" ; systematic_id "SPBC19C2.01" ; note "mRNA from AU006485" ;
chromosome2 GeneDB CDS_parts 1670582 1673749 . + . mRNA SPBC19C2.01 ; systematic_id "SPBC19C2.01" ; colour "2" ; gene "cdc28 ||| prp8 ||| SPBC21B10.01c ||| SPBC19C2.01 ||| SPBC874.01" ; Alias "cdc28" ; obsolete_name "SPBC21B10.01c ||| SPBC874.01" ; db_xref "SPD:41/41A05" ; synonym "prp8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705 ||| term=orthologous to S. cerevisiae YNR011C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005682; snRNP U5
GO:0005681; spliceosome complex
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "cdc28" ; product "ATP-dependent RNA helicase Cdc28" ;
chromosome2 GeneDB CDS 1670582 1673749 . + . mRNA SPBC19C2.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 1672699 1672799 . + . misc_feature unknown_1284 ; note "nominal overlap between cosmid SPBC21B10 and SPBC874" ;
chromosome2 GeneDB misc_feature 1673384 1673485 . + . misc_feature unknown_1285 ; note "nominal overlap between cosmid SPBC19C2 and cosmid SPBC874" ;
chromosome2 GeneDB 3'-UTR 1673750 1673825 . + . mRNA SPBC19C2.01 ; ID "SPBC19C2.01" ; systematic_id "SPBC19C2.01" ; note "mRNA from AU006625" ;
chromosome2 GeneDB CDS_parts 1674066 1675102 . + . mRNA SPBC19C2.02 ; systematic_id "SPBC19C2.02" ; colour "2" ; gene "pmt1 ||| SPBC19C2.02" ; Alias "pmt1" ; db_xref "SPD:32/32D02" ; GO "GO:0009008; DNA-methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pmt1" ; product "DNA methyltransferase homolog" ;
chromosome2 GeneDB CDS 1674066 1674233 . + . mRNA SPBC19C2.02 ; colour "2" ;
chromosome2 GeneDB CDS 1674278 1675102 . + . mRNA SPBC19C2.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 1674234 1674239 . + . misc_feature unknown_1286 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1674265 1674277 . + . misc_feature unknown_1287 ; colour "6" ; note "ttaatacttatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1675103 1675348 . + . mRNA SPBC19C2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.02" ; systematic_id "SPBC19C2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1675660 1675734 . + . mRNA SPBC19C2.03 ; Alias "rpc10" ; ID "SPBC19C2.03" ; db_xref "EMBL:U80217" ; systematic_id "SPBC19C2.03" ; primary_name "rpc10" ;
chromosome2 GeneDB CDS_parts 1675735 1675979 . + . mRNA SPBC19C2.03 ; systematic_id "SPBC19C2.03" ; colour "2" ; gene "rpc10 ||| rpb12 ||| SPBC19C2.03" ; Alias "rpc10" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:39/39G03" ; synonym "rpb12" ; GO "GO:0006360; transcription from RNA polymerase I promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0006383; transcription from RNA polymerase III promoter
GO:0003899
GO:0005736; DNA-directed RNA polymerase I complex
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0005666; DNA-directed RNA polymerase III complex
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YHR143W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpc10" ; product "DNA-directed RNA polymerase I, II and III subunit Rpc10" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB CDS 1675735 1675810 . + . mRNA SPBC19C2.03 ; colour "2" ;
chromosome2 GeneDB CDS 1675864 1675979 . + . mRNA SPBC19C2.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 1675811 1675816 . + . misc_feature unknown_1288 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB intron 1675811 1675863 . + . intron SPBC19C2.03 ; Alias "rpc10" ; db_xref "EMBL:U80217" ; systematic_id "SPBC19C2.03" ; primary_name "rpc10" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1675853 1675863 . + . misc_feature unknown_1289 ; colour "6" ; note "ctgaccatcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1675980 1676150 . + . mRNA SPBC19C2.03 ; Alias "rpc10" ; ID "SPBC19C2.03" ; db_xref "EMBL:U80217" ; systematic_id "SPBC19C2.03" ; primary_name "rpc10" ;
chromosome2 GeneDB 3'-UTR 1676502 1676523 . - . mRNA SPBC19C2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.04c" ; systematic_id "SPBC19C2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1676524 1677576 . - . mRNA SPBC19C2.04c ; systematic_id "SPBC19C2.04c" ; colour "2" ; gene "SPBC19C2.04c ||| ubp11" ; Alias "ubp11" ; db_xref "SPD:16/16A12" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005739; mitochondrion
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101" ; primary_name "ubp11" ; product "ubiquitin C-terminal hydrolase Ubp11" ;
chromosome2 GeneDB CDS 1676524 1677576 . - . mRNA SPBC19C2.04c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1677575 1677988 . - . mRNA SPBC19C2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.04c" ; systematic_id "SPBC19C2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1677577 1682860 . - . misc_feature unknown_1290 ; note "low complexity gene free region" ;
chromosome2 GeneDB misc_RNA 1680947 1681089 . + . misc_RNA SPNCRNA.108 ; db_xref "EMBL:AU011678" ; systematic_id "SPNCRNA.108" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU011678; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU011678; date=20050412 ||| term=genome organization, low complexity gene free region; qualifier=predicted; cv=genome_org; date=20050412" ; gene "SPNCRNA.108" ; product "non-coding RNA (predicted)" ; note "mRNA from AU011678" ;
chromosome2 GeneDB misc_feature 1681610 1682380 . + . misc_feature SPNCRNA.375 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.375" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "could be the 5' UTR of Ran1 ||| SPNG1483" ;
chromosome2 GeneDB 5'-UTR 1681782 1682860 . + . mRNA SPBC19C2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.05" ; systematic_id "SPBC19C2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1682861 1684273 . + . mRNA SPBC19C2.05 ; systematic_id "SPBC19C2.05" ; colour "2" ; gene "ran1 ||| pat1 ||| SPBC19C2.05" ; note "YDR247C is more divergent" ; Alias "ran1" ; db_xref "SPD:40/40E07" ; synonym "pat1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL026C and YDR247W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:3870979; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Mei2; db_xref=PMID:9062192; date=20100825 ||| term=target is Ste11; db_xref=PMID:8945514; date=20100825" ; GO "GO:0031138; negative regulation of conjugation with cellular fusion
GO:0045835; negative regulation of meiosis
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005524; ATP binding" ; primary_name "ran1" ; product "serine/threonine protein kinase Ran1" ;
chromosome2 GeneDB CDS 1682861 1684273 . + . mRNA SPBC19C2.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1684274 1684372 . + . mRNA SPBC19C2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.05" ; systematic_id "SPBC19C2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1686768 1687205 . - . mRNA SPBC19C2.06c ; systematic_id "SPBC19C2.06c" ; colour "8" ; gene "SPBC19C2.06c ||| mug124" ; db_xref "SPD:03/03G05" ; Alias "mug124" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug124" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1686768 1687205 . - . mRNA SPBC19C2.06c ; colour "8" ;
chromosome2 GeneDB 5'-UTR 1688336 1688366 . + . mRNA SPBC19C2.07 ; ID "SPBC19C2.07" ; systematic_id "SPBC19C2.07" ; note "mRNA from AU011079" ;
chromosome2 GeneDB CDS_parts 1688367 1689443 . + . mRNA SPBC19C2.07 ; systematic_id "SPBC19C2.07" ; colour "2" ; gene "fba1 ||| SPBC19C2.07" ; Alias "fba1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00030; ||| KEGG:MAP00051; ||| KEGG:MAP00710; ||| SPD:40/40C08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL060C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0006096; glycolysis
GO:0004332; fructose-bisphosphate aldolase activity
GO:0005737; cytoplasm" ; primary_name "fba1" ; product "fructose-bisphosphate aldolase Fba1" ; EC_number "4.1.2.13" ;
chromosome2 GeneDB CDS 1688367 1689443 . + . mRNA SPBC19C2.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1689444 1689599 . + . mRNA SPBC19C2.07 ; ID "SPBC19C2.07" ; systematic_id "SPBC19C2.07" ; note "mRNA from AU007197" ;
chromosome2 GeneDB 5'-UTR 1690143 1690147 . + . mRNA SPBC19C2.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.08" ; systematic_id "SPBC19C2.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1690148 1690978 . + . mRNA SPBC19C2.08 ; systematic_id "SPBC19C2.08" ; colour "7" ; gene "SPBC19C2.08 ||| prp38" ; Alias "prp38" ; db_xref "SPD:10/10G02" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR075C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp38" ; product "U4/U6 x U5 tri-snRNP complex subunit Prp38 (predicted)" ;
chromosome2 GeneDB CDS 1690148 1690289 . + . mRNA SPBC19C2.08 ; colour "7" ;
chromosome2 GeneDB CDS 1690488 1690978 . + . mRNA SPBC19C2.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 1690290 1690295 . + . misc_feature unknown_1291 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1690474 1690487 . + . misc_feature unknown_1292 ; colour "6" ; note "ctaatacatcttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1690979 1691084 . + . mRNA SPBC19C2.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.08" ; systematic_id "SPBC19C2.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1691405 1691827 . + . mRNA SPBC19C2.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.09" ; systematic_id "SPBC19C2.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1691828 1694530 . + . mRNA SPBC19C2.09 ; systematic_id "SPBC19C2.09" ; colour "2" ; gene "sre1 ||| SPBC19C2.09" ; Alias "sre1" ; db_xref "SPD:39/39A03" ; GO "GO:0032936; SREBP-SCAP complex
GO:0071458; integral to endoplasmic reticulum membrane, cytosolic side
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0010629; negative regulation of gene expression
GO:0006800; oxygen and reactive oxygen species metabolic process
GO:0070452; positive regulation of ergosterol biosynthetic process
GO:0070455; positive regulation of heme biosynthetic process
GO:0071073; positive regulation of phospholipid biosynthetic process
GO:0071073; positive regulation of phospholipid biosynthetic process
GO:0010630; regulation of transcription, start site selection
GO:0071456; cellular response to hypoxia
GO:0006994; sterol depletion response, SREBP target gene transcriptional activation
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15797383; date=20070206 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060413 ||| term=modification, proteolytic cleavage; cv=pt_mod; db_xref=PMID:15797383; evidence=IDA; date=20070206 ||| term=gene expression, transcriptionally activates genes required for anaerobic growth under oxygen-limiting conditions; db_xref=PMID:16537923; cv=gene_ex; date=20060413 ||| term=DNA binding specificity, binds SRE 5'-[A/T]TCAC[A/C]CAT-3'; cv=gene_ex; db_xref=PMID:16537923; date=20060413 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=misc functional group, membrane- tethered transcription factor; db_xref=PMID:11790253; evidence=ISS; cv=m_f_g; date=20060413 ||| term=misc, autoregulation; date=20080429 ||| term=misc, stability regulated by oxygen; db_xref=PMID:18418381; date=20080430 ||| term=target of proteasome; db_xref=PMID:18418381; date=20080430 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16537923; date=20100302 ||| term=target of proteasome; db_xref=PMID:19520858; date=20100308 ||| term=target of ERAD pathway; db_xref=PMID:19520858; date=20100308" ; primary_name "sre1" ; product "sterol regulatory element binding protein, transcription factor Sre1" ;
chromosome2 GeneDB CDS 1691828 1694530 . + . mRNA SPBC19C2.09 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1694531 1694652 . + . mRNA SPBC19C2.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.09" ; systematic_id "SPBC19C2.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1695097 1695220 . + . mRNA SPBC19C2.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.10" ; systematic_id "SPBC19C2.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1695221 1696841 . + . mRNA SPBC19C2.10 ; db_xref "SPD:25/25H11" ; systematic_id "SPBC19C2.10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BAR domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100217 ||| term=human SH3GL1 ortholog; date=20100217" ; colour "10" ; gene "SPBC19C2.10" ; product "BAR adaptor protein" ;
chromosome2 GeneDB CDS 1695221 1695808 . + . mRNA SPBC19C2.10 ; colour "10" ;
chromosome2 GeneDB CDS 1695924 1696841 . + . mRNA SPBC19C2.10 ; colour "10" ;
chromosome2 GeneDB misc_feature 1695809 1695814 . + . misc_feature unknown_1293 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1695913 1695923 . + . misc_feature unknown_1294 ; colour "6" ; note "ctaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1696842 1697131 . + . mRNA SPBC19C2.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.10" ; systematic_id "SPBC19C2.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1697510 1697734 . - . mRNA SPBC19C2.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.11c" ; systematic_id "SPBC19C2.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1697735 1699093 . - . mRNA SPBC19C2.11c ; systematic_id "SPBC19C2.11c" ; colour "7" ; db_xref "SPD:21/21B01" ; Alias "mdm34" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL219C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0032865; Mdm10/Mdm12/Mmm1 complex
GO:0005737; cytoplasm
GO:0005741; mitochondrial outer membrane
GO:0007005; mitochondrion organization
GO:0015914; phospholipid transport" ; primary_name "mdm34" ; product "mitochondrial outer membrane protein Mdm34 (predicted)" ;
chromosome2 GeneDB CDS 1697735 1699093 . - . mRNA SPBC19C2.11c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1699092 1699219 . - . mRNA SPBC19C2.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.11c" ; systematic_id "SPBC19C2.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1699988 1700081 . + . mRNA SPBC19C2.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.12" ; systematic_id "SPBC19C2.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1700082 1700706 . + . mRNA SPBC19C2.12 ; systematic_id "SPBC19C2.12" ; colour "7" ; gene "SPBC19C2.12 ||| mrpl51" ; Alias "mrpl51" ; db_xref "SPD:42/42E04" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl51" ; product "mitochondrial ribosomal protein subunit L51 (predicted)" ;
chromosome2 GeneDB CDS 1700082 1700147 . + . mRNA SPBC19C2.12 ; colour "7" ;
chromosome2 GeneDB CDS 1700239 1700401 . + . mRNA SPBC19C2.12 ; colour "7" ;
chromosome2 GeneDB CDS 1700498 1700706 . + . mRNA SPBC19C2.12 ; colour "7" ;
chromosome2 GeneDB misc_feature 1700148 1700153 . + . misc_feature unknown_1295 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1700223 1700238 . + . misc_feature unknown_1296 ; colour "6" ; note "ctaattttctttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1700402 1700407 . + . misc_feature unknown_1297 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1700480 1700497 . + . misc_feature unknown_1298 ; colour "6" ; note "ctaatgctacgataatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1700817 1700872 . - . mRNA SPBC19C2.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.13c" ; systematic_id "SPBC19C2.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1700873 1701973 . - . mRNA SPBC19C2.13c ; systematic_id "SPBC19C2.13c" ; colour "2" ; gene "SPBC19C2.13c ||| ctu2" ; Alias "ctu2" ; db_xref "SPD:17/17C07" ; GO "GO:0005829; cytosol
GO:0002143; wobble position uridine thiolation
GO:0002144; cytosolic tRNA thiouridylase complex
GO:0005515; protein binding
GO:0032447; protein urmylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL119W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ctu2" ; product "cytosolic thiouridylase subunit Ctu2" ;
chromosome2 GeneDB CDS 1700873 1701973 . - . mRNA SPBC19C2.13c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1701972 1702082 . - . mRNA SPBC19C2.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.13c" ; systematic_id "SPBC19C2.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1702182 1702628 . + . mRNA SPBC19C2.14 ; systematic_id "SPBC19C2.14" ; colour "2" ; gene "smd3 ||| SPBC19C2.14" ; Alias "smd3" ; db_xref "SPD:03/03H04" ; GO "GO:0003729; mRNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000243; commitment complex
GO:0005685; snRNP U1
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:1884590; date=19700101 ||| term=orthologous to S. cerevisiae YLR147C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "smd3" ; product "Sm snRNP core protein Smd3" ;
chromosome2 GeneDB CDS 1702182 1702218 . + . mRNA SPBC19C2.14 ; colour "2" ;
chromosome2 GeneDB CDS 1702264 1702323 . + . mRNA SPBC19C2.14 ; colour "2" ;
chromosome2 GeneDB CDS 1702379 1702508 . + . mRNA SPBC19C2.14 ; colour "2" ;
chromosome2 GeneDB CDS 1702562 1702628 . + . mRNA SPBC19C2.14 ; colour "2" ;
chromosome2 GeneDB misc_feature 1702219 1702224 . + . misc_feature unknown_1299 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1702253 1702263 . + . misc_feature unknown_1300 ; colour "6" ; note "ctaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1702324 1702329 . + . misc_feature unknown_1301 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1702365 1702378 . + . misc_feature unknown_1302 ; colour "6" ; note "cttacactaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1702509 1702514 . + . misc_feature unknown_1303 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1702544 1702561 . + . misc_feature unknown_1304 ; colour "6" ; note "ttaacgtttttaaacaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1702629 1702688 . + . mRNA SPBC19C2.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.14" ; systematic_id "SPBC19C2.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1703012 1703035 . - . mRNA SPBC19C2.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.15c" ; systematic_id "SPBC19C2.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1703036 1703764 . - . mRNA SPBC19C2.15c ; systematic_id "SPBC19C2.15c" ; colour "7" ; gene "SPBC19C2.15c ||| SPBC2F12.16" ; db_xref "SPD:08/08G01" ; synonym "SPBC2F12.16" ; GO "GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human PTPLA and PTBLB ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL097W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome2 GeneDB CDS 1703036 1703112 . - . mRNA SPBC19C2.15c ; colour "7" ;
chromosome2 GeneDB CDS 1703165 1703701 . - . mRNA SPBC19C2.15c ; colour "7" ;
chromosome2 GeneDB CDS 1703752 1703764 . - . mRNA SPBC19C2.15c ; colour "7" ;
chromosome2 GeneDB misc_feature 1703113 1703124 . - . misc_feature unknown_1305 ; colour "6" ; note "ttaactttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1703159 1703164 . - . misc_feature unknown_1306 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1703394 1704182 . + . misc_feature unknown_1307 ; note "nominal overlap between cosmid c19C2 and c2F12" ;
chromosome2 GeneDB misc_feature 1703702 1703720 . - . misc_feature unknown_1308 ; colour "6" ; note "ttaacaaagttaaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1703746 1703751 . - . misc_feature unknown_1309 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1703763 1703781 . - . mRNA SPBC19C2.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C2.15c" ; systematic_id "SPBC19C2.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1704337 1704400 . + . mRNA SPBC2F12.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.15c" ; systematic_id "SPBC2F12.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1704401 1705462 . + . mRNA SPBC2F12.15c ; db_xref "SPD:16/16C06" ; systematic_id "SPBC2F12.15c" ; colour "7" ; GO "GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0042144; vacuole fusion, non-autophagic
GO:0018345; protein amino acid palmitoylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-DHHC type; date=19700101 ||| term=orthologous to S. cerevisiae YNL326C and YDR459C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC2F12.15c" ; product "palmitoyltransferase (predicted)" ;
chromosome2 GeneDB CDS 1704401 1704628 . + . mRNA SPBC2F12.15c ; colour "7" ;
chromosome2 GeneDB CDS 1704701 1705462 . + . mRNA SPBC2F12.15c ; colour "7" ;
chromosome2 GeneDB misc_feature 1704629 1704634 . + . misc_feature unknown_1310 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1704683 1704700 . + . misc_feature unknown_1311 ; colour "6" ; note "ctaactcttctgtttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1705463 1705527 . + . mRNA SPBC2F12.15c ; ID "SPBC2F12.15c" ; systematic_id "SPBC2F12.15c" ; note "mRNA from AU006978" ;
chromosome2 GeneDB CDS_parts 1706975 1708881 . + . mRNA SPBC2F12.14c ; systematic_id "SPBC2F12.14c" ; colour "7" ; gene "gua1 ||| SPBC2F12.14c" ; Alias "gua1" ; db_xref "SPD:37/37A02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR216W and YLR432W and YML056C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003938; IMP dehydrogenase activity
GO:0006177; GMP biosynthesis" ; primary_name "gua1" ; product "IMP dehydrogenase Gua1 (predicted)" ; EC_number "1.1.1.205" ;
chromosome2 GeneDB CDS 1706975 1707431 . + . mRNA SPBC2F12.14c ; colour "7" ;
chromosome2 GeneDB CDS 1707764 1708881 . + . mRNA SPBC2F12.14c ; colour "7" ;
chromosome2 GeneDB misc_feature 1707432 1707437 . + . misc_feature unknown_1312 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 1707432 1707763 . + . intron SPBC2F12.14c ; Alias "gua1" ; db_xref "EMBL:D89106" ; systematic_id "SPBC2F12.14c" ; primary_name "gua1" ; note "confirmed by mRNA" ;
chromosome2 GeneDB snoRNA 1707601 1707681 . + . snoRNA SPSNORNA.22 ; Alias "snoR54" ; systematic_id "SPSNORNA.22" ; controlled_curation "term=orthologous to S. cerevisiae snR54; date=20070104 ||| term=warning, ncRNA in intron; date=20100426" ; primary_name "snoR54" ; gene "snoR54 ||| SPSNORNA.22" ; product "small nucleolar RNA snR54 (predicted)" ;
chromosome2 GeneDB misc_feature 1707753 1707763 . + . misc_feature unknown_1313 ; colour "6" ; note "ctaacctttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1708882 1708944 . + . mRNA SPBC2F12.14c ; ID "SPBC2F12.14c" ; systematic_id "SPBC2F12.14c" ; note "mRNA from AU010212" ;
chromosome2 GeneDB CDS_parts 1709214 1711921 . - . mRNA SPBC2F12.13 ; systematic_id "SPBC2F12.13" ; colour "2" ; gene "klp5 ||| sot1 ||| SPBC2F12.13" ; Alias "klp5" ; db_xref "SPD:39/39A05" ; synonym "sot1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kinesin Kip3 subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=pathway, Ras1-Scd; cv=pathway; db_xref=PMID:11739790; date=19700101 ||| term=orthologous to S. cerevisiae YGL216W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=kinesin-8 family; date=20090316 ||| term=protein sequence feature, NLS; cv=sequence_feature; db_xref=PMID:18799626; date=20090316 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:18799626; cv=localization; date=20090316 ||| term=localization, klp5 and klp6 are interdependent for mitotic nuclear localization; cv=localization; db_xref=PMID:18799626; date=20090316 ||| term=localization, klp5 and klp6 enter the nucleus separately; db_xref=PMID:18799626; cv=localization; date=20090316 ||| term=phenotype, chromosome segregation defects, chromosome congression; qualifier=deletion; cv=phenotype; db_xref=PMID:18799626; date=20090316 ||| term=phenotype, cytoskeletal defects, long cytoplasmic microtubules; qualifier=deletion; cv=phenotype; db_xref=PMID:18799626; date=20090316 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201 ||| term=phenotype, resistance to TBZ; db_xref=PMID:11739790; cv=phenotype; date=20100216 ||| term=phenotype, resistance to microtubule depolymerizing drugs; db_xref=PMID:11739790; cv=phenotype; date=20100216" ; GO "GO:0003777; microtubule motor activity
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0005816; spindle pole body
GO:0015630; microtubule cytoskeleton
GO:0000070; mitotic sister chromatid segregation
GO:0000915; cytokinesis, contractile ring formation
; regulation of microtubule depolymerization
GO:0031114; regulation of microtubule polymerization
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0007126; meiosis
GO:0000778; kinetochore
GO:0051233; spindle midzone
GO:0005873; plus-end kinesin complex
GO:0070507; regulation of microtubule cytoskeleton organization
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0034504; cellular protein localization to nucleus
GO:0008574; plus-end-directed microtubule motor activity" ; primary_name "klp5" ; product "kinesin-like protein Klp5" ;
chromosome2 GeneDB CDS 1709214 1711834 . - . mRNA SPBC2F12.13 ; colour "2" ;
chromosome2 GeneDB CDS 1711891 1711921 . - . mRNA SPBC2F12.13 ; colour "2" ;
chromosome2 GeneDB misc_feature 1711835 1711848 . - . misc_feature unknown_1314 ; colour "6" ; note "ctaacataaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1711885 1711890 . - . misc_feature unknown_1315 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1711920 1712088 . - . mRNA SPBC2F12.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.13" ; systematic_id "SPBC2F12.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1712754 1713102 . + . mRNA SPBC2F12.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.12c" ; systematic_id "SPBC2F12.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1713103 1714886 . + . mRNA SPBC2F12.12c ; db_xref "SPD:36/36C12" ; systematic_id "SPBC2F12.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC2F12.12c" ; product "human c19orf29 ortholog" ;
chromosome2 GeneDB CDS 1713103 1713228 . + . mRNA SPBC2F12.12c ; colour "10" ;
chromosome2 GeneDB CDS 1713275 1713526 . + . mRNA SPBC2F12.12c ; colour "10" ;
chromosome2 GeneDB CDS 1713582 1713674 . + . mRNA SPBC2F12.12c ; colour "10" ;
chromosome2 GeneDB CDS 1713721 1714173 . + . mRNA SPBC2F12.12c ; colour "10" ;
chromosome2 GeneDB CDS 1714257 1714886 . + . mRNA SPBC2F12.12c ; colour "10" ;
chromosome2 GeneDB misc_feature 1713229 1713234 . + . misc_feature unknown_1316 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1713259 1713274 . + . misc_feature unknown_1317 ; colour "6" ; note "ttaaccttccctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1713527 1713532 . + . misc_feature unknown_1318 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1713569 1713581 . + . misc_feature unknown_1319 ; colour "6" ; note "ttaacatacttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1713675 1713680 . + . misc_feature unknown_1320 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1713703 1713720 . + . misc_feature unknown_1321 ; colour "6" ; note "ctaaattatacattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1714174 1714179 . + . misc_feature unknown_1322 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1714237 1714256 . + . misc_feature unknown_1323 ; colour "6" ; note "ctaaccaaaatcttttctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1714887 1714898 . + . mRNA SPBC2F12.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.12c" ; systematic_id "SPBC2F12.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1717715 1718223 . + . mRNA SPBC2F12.11c ; ID "SPBC2F12.11c" ; systematic_id "SPBC2F12.11c" ; note "mRNA from AU013688" ;
chromosome2 GeneDB CDS_parts 1718224 1718883 . + . mRNA SPBC2F12.11c ; systematic_id "SPBC2F12.11c" ; colour "2" ; gene "rep2 ||| SPBC2F12.11c" ; Alias "rep2" ; db_xref "SPD:40/40A03" ; GO "GO:0030907; MBF transcription complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0045896; regulation of transcription, mitotic
GO:0051037; regulation of transcription, meiotic
GO:0000083; regulation of transcription involved in G1/S-phase of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=at_low_temperature; db_xref=PMID:7588609; date=20100727 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; date=20100122" ; primary_name "rep2" ; product "transcriptional activator, MBF subunit Rep2" ;
chromosome2 GeneDB CDS 1718224 1718883 . + . mRNA SPBC2F12.11c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1718884 1719239 . + . mRNA SPBC2F12.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.11c" ; systematic_id "SPBC2F12.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1719350 1719550 . - . mRNA SPBC2F12.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.10" ; systematic_id "SPBC2F12.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1719551 1720663 . - . mRNA SPBC2F12.10 ; db_xref "SPD:17/17E06" ; systematic_id "SPBC2F12.10" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR322W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC2F12.10" ; product "mitochondrial ribosomal protein subunit L35 (predicted)" ;
chromosome2 GeneDB CDS 1719551 1720663 . - . mRNA SPBC2F12.10 ; colour "7" ;
chromosome2 GeneDB misc_RNA 1721073 1721574 . + . misc_RNA SPNCRNA.376 ; db_xref "PMID:18488015" ; synonym "SPNG1494" ; systematic_id "SPNCRNA.376" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 1723013 1724080 . + . mRNA SPBC2F12.09c ; systematic_id "SPBC2F12.09c" ; colour "2" ; gene "atf21 ||| SPBC2F12.09c" ; Alias "atf21" ; db_xref "SPD:32/32D09" ; GO "GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016563; transcriptional activator activity
GO:0010673; positive regulation of transcription from RNA polymerase II promoter, meiotic
GO:0040020; regulation of meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bZIP (basic leucine zipper) transcription factor family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080721 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:12161753; date=20090110 ||| term=Atf-CREB subfamily; date=20100826" ; primary_name "atf21" ; product "transcription factor, Atf-CREB family Atf21" ;
chromosome2 GeneDB CDS 1723013 1724080 . + . mRNA SPBC2F12.09c ; colour "2" ;
chromosome2 GeneDB CDS_parts 1724847 1726055 . + . mRNA SPBC2F12.08c ; systematic_id "SPBC2F12.08c" ; colour "2" ; gene "ceg1 ||| pce1 ||| SPBC2F12.08c" ; Alias "ceg1" ; db_xref "SPD:32/32F06" ; synonym "pce1" ; GO "GO:0004484; mRNA guanylyltransferase activity
GO:0006370; mRNA capping
GO:0005634; nucleus
GO:0005515; protein binding
GO:0031533; mRNA capping enzyme complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL130W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ceg1" ; product "mRNA guanylyltransferase Ceg1" ; EC_number "2.7.7.50" ;
chromosome2 GeneDB CDS 1724847 1726055 . + . mRNA SPBC2F12.08c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1726056 1726443 . + . mRNA SPBC2F12.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.08c" ; systematic_id "SPBC2F12.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1726659 1726676 . + . mRNA SPBC2F12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.07c" ; systematic_id "SPBC2F12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1726677 1727438 . + . mRNA SPBC2F12.07c ; systematic_id "SPBC2F12.07c" ; colour "7" ; gene "rpl802 ||| rpl8-2 ||| rpk37 ||| SPBC2F12.07c ||| rpk5b" ; Alias "rpl802" ; synonym "rpl8-2 ||| rpk37 ||| rpk5b" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR031C-A and YIL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0019843; rRNA binding" ; primary_name "rpl802" ; product "60S ribosomal protein L8 (predicted)" ;
chromosome2 GeneDB CDS 1726677 1727438 . + . mRNA SPBC2F12.07c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1727439 1727486 . + . mRNA SPBC2F12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.07c" ; systematic_id "SPBC2F12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1728810 1728833 . + . mRNA SPBC2F12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.05c" ; systematic_id "SPBC2F12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1728834 1733137 . + . mRNA SPBC2F12.05c ; db_xref "SPD:30/30G09" ; systematic_id "SPBC2F12.05c" ; colour "7" ; GO "GO:0008142; oxysterol binding
GO:0005545; phosphatidylinositol binding
GO:0005783; endoplasmic reticulum
GO:0015918; sterol transport
GO:0006897; endocytosis
GO:0006887; exocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YAR042W and YDL019C and YHR073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPBC2F12.05c" ; product "sterol binding ankyrin repeat protein (predicted)" ;
chromosome2 GeneDB CDS 1728834 1728891 . + . mRNA SPBC2F12.05c ; colour "7" ;
chromosome2 GeneDB CDS 1728957 1728998 . + . mRNA SPBC2F12.05c ; colour "7" ;
chromosome2 GeneDB CDS 1729060 1729232 . + . mRNA SPBC2F12.05c ; colour "7" ;
chromosome2 GeneDB CDS 1729478 1733137 . + . mRNA SPBC2F12.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 1728892 1728897 . + . misc_feature unknown_1324 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1728940 1728956 . + . misc_feature unknown_1325 ; colour "6" ; note "ctaactacgcgttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1728999 1729004 . + . misc_feature unknown_1326 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1729041 1729059 . + . misc_feature unknown_1327 ; colour "6" ; note "ctgacgtgtgaatgaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1729233 1729238 . + . misc_feature unknown_1328 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1729459 1729477 . + . misc_feature unknown_1329 ; colour "6" ; note "ttaacatttgtttctttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1733138 1733261 . + . mRNA SPBC2F12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.05c" ; systematic_id "SPBC2F12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1733420 1733983 . - . mRNA SPBC2F12.04 ; systematic_id "SPBC2F12.04" ; colour "2" ; gene "rpl1701 ||| rpl17 ||| rpl17-1 ||| SPBC2F12.04" ; Alias "rpl1701" ; obsolete_name "SPCC2F12.04" ; db_xref "SPD:31/31E10" ; synonym "rpl17 ||| rpl17-1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL180W and YJL177W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl1701" ; product "60S ribosomal protein L17" ;
chromosome2 GeneDB CDS 1733420 1733983 . - . mRNA SPBC2F12.04 ; colour "2" ;
chromosome2 GeneDB promoter 1734058 1734065 . - . promoter SPBC2F12.04 ; colour "4" ; gene "SPBC2F12.04" ; note "Homol D box" ;
chromosome2 GeneDB promoter 1734078 1734087 . - . promoter SPBC2F12.04 ; colour "4" ; gene "SPBC2F12.04" ; note "Homol E box" ;
chromosome2 GeneDB 5'-UTR 1734252 1734353 . + . mRNA SPBC2F12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.03c" ; systematic_id "SPBC2F12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1734354 1737029 . + . mRNA SPBC2F12.03c ; db_xref "SPD:38/38H08" ; systematic_id "SPBC2F12.03c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100909 ||| term=warning, gene structure may be incorrect; date=20100927" ; colour "10" ; gene "SPBC2F12.03c" ; product "EST1 family protein (predicted)" ;
chromosome2 GeneDB CDS 1734354 1737029 . + . mRNA SPBC2F12.03c ; colour "10" ;
chromosome2 GeneDB intron 1736417 1736635 . + . intron SPBC2F12.03c ; systematic_id "SPBC2F12.03c" ;
chromosome2 GeneDB 3'-UTR 1737030 1738268 . + . mRNA SPBC2F12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.03c" ; systematic_id "SPBC2F12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1738658 1738977 . + . mRNA SPBC2F12.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.02c" ; systematic_id "SPBC2F12.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1738978 1739841 . + . mRNA SPBC2F12.02c ; systematic_id "SPBC2F12.02c" ; colour "7" ; gene "SPBC2F12.02c ||| mrpl7" ; Alias "mrpl7" ; db_xref "SPD:11/11E08" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR237W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl7" ; product "mitochondrial ribosomal protein subunit L7 (predicted)" ;
chromosome2 GeneDB CDS 1738978 1739841 . + . mRNA SPBC2F12.02c ; colour "7" ;
chromosome2 GeneDB misc_feature 1739841 1741405 . + . misc_feature unknown_1330 ; note "nominal overlap with cosmid SPBC1D7, EM:Z98270 S.pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 1739841 1741405 . - . misc_feature unknown_1331 ; note "nominal overlap with cosmid SPBC2F12, EM:Z97211 S.pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 1739842 1739973 . + . mRNA SPBC2F12.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2F12.02c" ; systematic_id "SPBC2F12.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1740246 1740316 . - . mRNA SPBC1D7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1D7.05" ; systematic_id "SPBC1D7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1740317 1742296 . - . mRNA SPBC1D7.05 ; systematic_id "SPBC1D7.05" ; colour "2" ; gene "byr2 ||| ste8 ||| SPBC2F12.01 ||| SPBC1D7.05" ; Alias "byr2" ; db_xref "SPD:33/33E12" ; synonym "ste8 ||| SPBC2F12.01" ; GO "GO:0032005; signal transduction during conjugation with cellular fusion
GO:0000751; cell cycle arrest in response to pheromone
GO:0004709; MAP kinase kinase kinase activity
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0005515; protein binding
GO:0005737; cytoplasm
GO:0005886; plasma membrane
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target of Ste4; db_xref=PMID:8816472; date=19700101 ||| term=orthologous to S. cerevisiae YLR362W; date=19700101 ||| term=complementation, functionally complemented by S. cerevisiae STE11; db_xref=PMID:1435723; cv=complementation; date=19700101 ||| term=target of Ras1; db_xref=PMID:7836423; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sterile; db_xref=PMID:3185514; date=20101013 ||| term=name description, STErile; db_xref=PMID:3185514; date=20101013" ; primary_name "byr2" ; product "MAP kinase kinase kinase Byr2" ;
chromosome2 GeneDB CDS 1740317 1742296 . - . mRNA SPBC1D7.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1743968 1744112 . - . mRNA SPBC1D7.04 ; ID "SPBC1D7.04" ; systematic_id "SPBC1D7.04" ; note "mRNA from AU009389" ;
chromosome2 GeneDB CDS_parts 1744113 1744712 . - . mRNA SPBC1D7.04 ; systematic_id "SPBC1D7.04" ; colour "2" ; gene "mlo3 ||| SPBC1D7.04" ; Alias "mlo3" ; db_xref "SPD:31/31F04" ; GO "GO:0005634; nucleus
GO:0000346; transcription export complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR381W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15990877; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Missegregation and Lethal when Overexpressed; db_xref=PMID:8972853; date=20100723" ; primary_name "mlo3" ; product "RNA binding protein Mlo3" ;
chromosome2 GeneDB CDS 1744113 1744712 . - . mRNA SPBC1D7.04 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1744711 1744761 . - . mRNA SPBC1D7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1D7.04" ; systematic_id "SPBC1D7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1745777 1746040 . - . mRNA SPBC1D7.03 ; ID "SPBC1D7.03" ; systematic_id "SPBC1D7.03" ; note "mRNA from AU012097" ;
chromosome2 GeneDB CDS_parts 1746041 1747426 . - . mRNA SPBC1D7.03 ; systematic_id "SPBC1D7.03" ; colour "7" ; gene "mug80 ||| SPBC1D7.03" ; Alias "mug80" ; db_xref "SPD:21/21D11" ; GO "GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YGL215W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug80" ; product "cyclin Clg1 (predicted)" ;
chromosome2 GeneDB CDS 1746041 1747426 . - . mRNA SPBC1D7.03 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1747425 1747786 . - . mRNA SPBC1D7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1D7.03" ; systematic_id "SPBC1D7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1747427 1753588 . - . misc_feature unknown_1332 ; note "low complexity gene free region, with high G-C/G+C in first in 4253-7500 and low G-C/G+C in 7500-10000" ;
chromosome2 GeneDB misc_RNA 1749534 1749589 . + . misc_RNA SPNCRNA.116 ; systematic_id "SPNCRNA.116" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.116" ; product "non-coding RNA (predicted)" ; note "short region of DNA highly conserved with c2D10" ;
chromosome2 GeneDB 5'-UTR 1752456 1753588 . + . mRNA SPBC1D7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1D7.02c" ; systematic_id "SPBC1D7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1753589 1755286 . + . mRNA SPBC1D7.02c ; systematic_id "SPBC1D7.02c" ; colour "2" ; gene "scr1 ||| SPBC1D7.02c" ; Alias "scr1" ; db_xref "SPD:39/39E12" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005634; nucleus" ; controlled_curation "term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YGL035C and YGL209W and YER028C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "scr1" ; product "transcription factor Scr1" ;
chromosome2 GeneDB CDS 1753589 1755286 . + . mRNA SPBC1D7.02c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1755287 1755480 . + . mRNA SPBC1D7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1D7.02c" ; systematic_id "SPBC1D7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1755901 1756509 . - . mRNA SPBC1D7.01 ; ID "SPBC1D7.01" ; systematic_id "SPBC1D7.01" ; note "mRNA from AU006642" ;
chromosome2 GeneDB intron 1756043 1756265 . - . intron unknown_1333 ; note "confirmed intron - in the 3' UTR of SPBC1D7.01c" ;
chromosome2 GeneDB snoRNA 1756122 1756222 . - . snoRNA SPSNORNA.23 ; Alias "snoZ15" ; db_xref "EMBL:AJ223844" ; systematic_id "SPSNORNA.23" ; primary_name "snoZ15" ; gene "snoZ15 ||| SPSNORNA.23" ; product "small nucleolar RNA Z15" ;
chromosome2 GeneDB CDS_parts 1756510 1757096 . - . mRNA SPBC1D7.01 ; db_xref "SPD:42/42D01" ; systematic_id "SPBC1D7.01" ; colour "7" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL179W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1D7.01" ; product "prefoldin subunit 1 (predicted)" ;
chromosome2 GeneDB CDS 1756510 1756672 . - . mRNA SPBC1D7.01 ; colour "7" ;
chromosome2 GeneDB CDS 1756824 1756990 . - . mRNA SPBC1D7.01 ; colour "7" ;
chromosome2 GeneDB CDS 1757088 1757096 . - . mRNA SPBC1D7.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 1756673 1756690 . - . misc_feature unknown_1334 ; colour "6" ; note "ctaactgtttatttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1756818 1756823 . - . misc_feature unknown_1335 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1756991 1757013 . - . misc_feature unknown_1336 ; colour "6" ; note "ctaatgagctttgggcatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1757082 1757087 . - . misc_feature unknown_1337 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1757095 1757240 . - . mRNA SPBC1D7.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1D7.01" ; systematic_id "SPBC1D7.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1757520 1757806 . + . mRNA SPBC11G11.01 ; ID "SPBC11G11.01" ; systematic_id "SPBC11G11.01" ; note "mRNA from AU008856" ;
chromosome2 GeneDB misc_feature 1757741 1757840 . + . misc_feature unknown_1338 ; note "nominal overlap with cosmid SPBC11G11 and cosmid cosmid SPBC1D7" ;
chromosome2 GeneDB CDS_parts 1757807 1758402 . + . mRNA SPBC11G11.01 ; systematic_id "SPBC11G11.01" ; colour "7" ; gene "SPBC11G11.01 ||| fis1" ; Alias "fis1" ; db_xref "SPD:06/06E11" ; GO "GO:0007005; mitochondrion organization and biogenesis
GO:0000266; mitochondrial fission
GO:0005741; mitochondrial outer membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL065C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fis1" ; product "mitochondrial fission protein Fis1 (predicted)" ;
chromosome2 GeneDB CDS 1757807 1758188 . + . mRNA SPBC11G11.01 ; colour "7" ;
chromosome2 GeneDB CDS 1758302 1758402 . + . mRNA SPBC11G11.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 1757807 1757840 . + . misc_feature unknown_1339 ; note "SPBC11G11.01- see full length protein in c11G11" ;
chromosome2 GeneDB misc_feature 1758189 1758194 . + . misc_feature unknown_1340 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 1758237 1758957 . - . mRNA SPBC11G11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11G11.02c" ; systematic_id "SPBC11G11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1758287 1758301 . + . misc_feature unknown_1341 ; colour "6" ; note "ctaacccgtttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1758403 1759229 . + . mRNA SPBC11G11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11G11.01" ; systematic_id "SPBC11G11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1758958 1760379 . - . mRNA SPBC11G11.02c ; systematic_id "SPBC11G11.02c" ; colour "7" ; gene "end3 ||| SPBC11G11.02c" ; Alias "end3" ; db_xref "SPD:21/21H02" ; GO "GO:0005509; calcium ion binding
GO:0030479; actin cortical patch
GO:0006897; endocytosis
GO:0007015; actin filament organization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YNL084C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "end3" ; product "actin cortical patch component End3 (predicted)" ;
chromosome2 GeneDB CDS 1758958 1759860 . - . mRNA SPBC11G11.02c ; colour "7" ;
chromosome2 GeneDB CDS 1760085 1760161 . - . mRNA SPBC11G11.02c ; colour "7" ;
chromosome2 GeneDB CDS 1760232 1760379 . - . mRNA SPBC11G11.02c ; colour "7" ;
chromosome2 GeneDB misc_feature 1759861 1759871 . - . misc_feature unknown_1342 ; colour "6" ; note "ctaaccattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1760079 1760084 . - . misc_feature unknown_1343 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1760162 1760183 . - . misc_feature unknown_1344 ; colour "6" ; note "ctaatgttacgaatatggatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1760226 1760231 . - . misc_feature unknown_1345 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1760378 1760432 . - . mRNA SPBC11G11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11G11.02c" ; systematic_id "SPBC11G11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1760711 1760731 . + . mRNA SPBC11G11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11G11.03" ; systematic_id "SPBC11G11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1760732 1761792 . + . mRNA SPBC11G11.03 ; systematic_id "SPBC11G11.03" ; colour "7" ; gene "SPBC11G11.03" ; Alias "mrt4" ; db_xref "SPD:16/16C05" ; GO "GO:0006402; mRNA catabolic process
GO:0006364; rRNA processing
GO:0000027; ribosomal large subunit assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrt4" ; product "mRNA turnover and ribosome assembly protein Mrt4 (predicted)" ;
chromosome2 GeneDB CDS 1760732 1760848 . + . mRNA SPBC11G11.03 ; colour "7" ;
chromosome2 GeneDB CDS 1761184 1761792 . + . mRNA SPBC11G11.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 1760849 1760854 . + . misc_feature unknown_1346 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1761163 1761183 . + . misc_feature unknown_1347 ; colour "6" ; note "ctaactgtttattttcaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1761793 1761975 . + . mRNA SPBC11G11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11G11.03" ; systematic_id "SPBC11G11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1762436 1763022 . + . mRNA SPBC11G11.04 ; systematic_id "SPBC11G11.04" ; colour "7" ; gene "trs20 ||| SPBC11G11.04" ; Alias "trs20" ; db_xref "SPD:06/06D05" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030008; TRAPP complex
GO:0006886; intracellular protein transport
GO:0005801; Golgi cis face
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR254C; date=19700101 ||| term=disease associated, X-linked spondyloepiphyseal dysplasia tarda; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trs20" ; product "TRAPP complex subunit Trs20 (predicted)" ;
chromosome2 GeneDB CDS 1762436 1762522 . + . mRNA SPBC11G11.04 ; colour "7" ;
chromosome2 GeneDB CDS 1762570 1762652 . + . mRNA SPBC11G11.04 ; colour "7" ;
chromosome2 GeneDB CDS 1762713 1762774 . + . mRNA SPBC11G11.04 ; colour "7" ;
chromosome2 GeneDB CDS 1762844 1763022 . + . mRNA SPBC11G11.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 1762523 1762528 . + . misc_feature unknown_1348 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1762554 1762569 . + . misc_feature unknown_1349 ; colour "6" ; note "ctaatatctgaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1762653 1762658 . + . misc_feature unknown_1350 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1762691 1762712 . + . misc_feature unknown_1351 ; colour "6" ; note "ctaatactctgtttttgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1762775 1762780 . + . misc_feature unknown_1352 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1762824 1762843 . + . misc_feature unknown_1353 ; colour "6" ; note "ctaatgttcattatttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1763023 1763290 . + . mRNA SPBC11G11.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11G11.04" ; systematic_id "SPBC11G11.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1763513 1764503 . - . mRNA SPBC11G11.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11G11.06c" ; systematic_id "SPBC11G11.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1763735 1763751 . + . mRNA SPBC11G11.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11G11.05" ; systematic_id "SPBC11G11.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1763752 1764507 . + . mRNA SPBC11G11.05 ; systematic_id "SPBC11G11.05" ; colour "7" ; gene "rpa34 ||| SPBC11G11.05" ; Alias "rpa34" ; db_xref "SPD:09/09C10" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YJL148W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "rpa34" ; product "DNA-directed RNA polymerase I complex subunit Rpa34 (predicted)" ;
chromosome2 GeneDB CDS 1763752 1764507 . + . mRNA SPBC11G11.05 ; colour "7" ;
chromosome2 GeneDB CDS_parts 1764504 1765133 . - . mRNA SPBC11G11.06c ; systematic_id "SPBC11G11.06c" ; colour "2" ; gene "sme1 ||| SPBC11G11.06c" ; Alias "sme1" ; db_xref "SPD:07/07C01" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005685; snRNP U1
GO:0000395; nuclear mRNA 5'-splice site recognition
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR159C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "sme1" ; product "Sm snRNP core protein Sme1" ;
chromosome2 GeneDB CDS 1764504 1764553 . - . mRNA SPBC11G11.06c ; colour "2" ;
chromosome2 GeneDB CDS 1764783 1764858 . - . mRNA SPBC11G11.06c ; colour "2" ;
chromosome2 GeneDB CDS 1764968 1765057 . - . mRNA SPBC11G11.06c ; colour "2" ;
chromosome2 GeneDB CDS 1765095 1765133 . - . mRNA SPBC11G11.06c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1764508 1764565 . + . mRNA SPBC11G11.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11G11.05" ; systematic_id "SPBC11G11.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1764554 1764567 . - . misc_feature unknown_1354 ; colour "6" ; note "ctaacattgcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1764777 1764782 . - . misc_feature unknown_1355 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1764859 1764875 . - . misc_feature unknown_1356 ; colour "6" ; note "ctaacgatatatgacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1764962 1764967 . - . misc_feature unknown_1357 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1765058 1765070 . - . misc_feature unknown_1358 ; colour "6" ; note "ctaacttacgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1765089 1765094 . - . misc_feature unknown_1359 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1765132 1765161 . - . mRNA SPBC11G11.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11G11.06c" ; systematic_id "SPBC11G11.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1766103 1766150 . + . mRNA SPBC11G11.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11G11.07" ; systematic_id "SPBC11G11.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1766151 1769069 . + . mRNA SPBC11G11.07 ; systematic_id "SPBC11G11.07" ; colour "7" ; gene "SPBC11G11.07 ||| SPBC18H10.01 ||| mtr10" ; Alias "mtr10" ; db_xref "SPD:47/47E01" ; synonym "SPBC18H10.01" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0008565; protein transporter activity
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=orthologous to S. cerevisiae YOR160W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TNP03 ortholog; date=20110113" ; primary_name "mtr10" ; product "karyopherin Mtr10 (predicted)" ;
chromosome2 GeneDB CDS 1766151 1766249 . + . mRNA SPBC11G11.07 ; colour "7" ;
chromosome2 GeneDB CDS 1766301 1769069 . + . mRNA SPBC11G11.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 1766250 1766255 . + . misc_feature unknown_1360 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1766282 1766300 . + . misc_feature unknown_1361 ; colour "6" ; note "ttaacctgcatatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1767213 1767335 . + . misc_feature unknown_1362 ; note "nominal overlap with cosmid SPBC18H10 and cosmid SPBC11G11" ;
chromosome2 GeneDB 3'-UTR 1769070 1769138 . + . mRNA SPBC11G11.07 ; ID "SPBC11G11.07" ; systematic_id "SPBC11G11.07" ; note "mRNA from AU010649" ;
chromosome2 GeneDB 5'-UTR 1770003 1770092 . + . mRNA SPBC18H10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.02" ; systematic_id "SPBC18H10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1770093 1772249 . + . mRNA SPBC18H10.02 ; systematic_id "SPBC18H10.02" ; colour "2" ; gene "lcf1 ||| SPBC18H10.02" ; Alias "lcf1" ; db_xref "SPD:37/37F06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR317W and YIL009W and YMR246W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human ACSL3 and ACSL4 ortholog; date=20100217" ; GO "GO:0005737; cytoplasm
GO:0004467; long-chain-fatty-acid-CoA ligase activity
GO:0001676; long-chain fatty acid metabolic process
GO:0070317; negative regulation of G0 to G1 transition
GO:0001300; chronological cell aging" ; primary_name "lcf1" ; product "long-chain-fatty-acid-CoA ligase Lcf1" ; EC_number "6.2.1.3" ;
chromosome2 GeneDB CDS 1770093 1770111 . + . mRNA SPBC18H10.02 ; colour "2" ;
chromosome2 GeneDB CDS 1770238 1772249 . + . mRNA SPBC18H10.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 1770112 1770117 . + . misc_feature unknown_1363 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1770221 1770237 . + . misc_feature unknown_1364 ; colour "6" ; note "ctaactgtaccatgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1772250 1772629 . + . mRNA SPBC18H10.02 ; ID "SPBC18H10.02" ; systematic_id "SPBC18H10.02" ; note "mRNA from AU013877" ;
chromosome2 GeneDB CDS_parts 1773023 1773912 . + . mRNA SPBC18H10.03 ; systematic_id "SPBC18H10.03" ; colour "2" ; gene "tif35 ||| SPBC18H10.03" ; Alias "tif35" ; db_xref "SPD:40/40B07" ; GO "GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
GO:0003723; RNA binding
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YDR429C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tif35" ; product "translation initiation factor eIF3g" ;
chromosome2 GeneDB CDS 1773023 1773033 . + . mRNA SPBC18H10.03 ; colour "2" ;
chromosome2 GeneDB CDS 1773075 1773912 . + . mRNA SPBC18H10.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 1773034 1773039 . + . misc_feature unknown_1365 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1773063 1773074 . + . misc_feature unknown_1366 ; colour "6" ; note "ctaacaaagtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1773913 1774406 . + . mRNA SPBC18H10.03 ; Alias "tif35" ; ID "SPBC18H10.03" ; db_xref "EMBL:D89144" ; systematic_id "SPBC18H10.03" ; primary_name "tif35" ;
chromosome2 GeneDB tRNA 1774860 1774932 . + . tRNA SPBTRNATRP.03 ; systematic_id "SPBTRNATRP.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033423; CCA codon-amino acid adaptor activity" ; gene "SPBTRNATRP.03" ; product "tRNA Tryptophan" ; note "tRNA Trp anticodon CCA, Cove score 68.85" ;
chromosome2 GeneDB 3'-UTR 1775175 1775488 . - . mRNA SPBC18H10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.04c" ; systematic_id "SPBC18H10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1775489 1776897 . - . mRNA SPBC18H10.04c ; systematic_id "SPBC18H10.04c" ; colour "2" ; gene "sce3 ||| tif48 ||| SPBC18H10.04c" ; Alias "sce3" ; db_xref "SPD:33/33A03" ; synonym "tif48" ; GO "GO:0003723; RNA binding
GO:0006413; translational initiation
GO:0003743; translation initiation factor activity
GO:0005840; ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:9254700; cv=phenotype; date=20100406 ||| term=phenotype, no obvious phenotype; qualifier=deletion; db_xref=PMID:9254700; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YPR163C; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "sce3" ; product "translation initiation factor (predicted)" ;
chromosome2 GeneDB CDS 1775489 1776549 . - . mRNA SPBC18H10.04c ; colour "2" ;
chromosome2 GeneDB CDS 1776714 1776804 . - . mRNA SPBC18H10.04c ; colour "2" ;
chromosome2 GeneDB CDS 1776846 1776856 . - . mRNA SPBC18H10.04c ; colour "2" ;
chromosome2 GeneDB CDS 1776894 1776897 . - . mRNA SPBC18H10.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 1776550 1776570 . - . misc_feature unknown_1367 ; colour "6" ; note "ctaactcaatttatctattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1776708 1776713 . - . misc_feature unknown_1368 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1776805 1776818 . - . misc_feature unknown_1369 ; colour "6" ; note "ctgaacgatatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1776840 1776845 . - . misc_feature unknown_1370 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1776857 1776866 . - . misc_feature unknown_1371 ; colour "6" ; note "ttaataatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1776888 1776893 . - . misc_feature unknown_1372 ; colour "6" ; note "gcaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1776896 1776935 . - . mRNA SPBC18H10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.04c" ; systematic_id "SPBC18H10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1777375 1777788 . - . misc_RNA SPNCRNA.17 ; Alias "meu11" ; db_xref "PMID:12597277 ||| EMBL:AB084829" ; systematic_id "SPNCRNA.17" ; synonym "prl17" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu11" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB 5'-UTR 1779244 1780013 . + . mRNA SPBC18H10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.05" ; systematic_id "SPBC18H10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1780014 1781774 . + . mRNA SPBC18H10.05 ; db_xref "SPD:36/36B06" ; systematic_id "SPBC18H10.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR102C and YKL121W; date=19700101 ||| term=WD repeat protein; date=20071214 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human WDR44 ortholog; date=20100718" ; colour "10" ; gene "SPBC18H10.05" ; product "WD repeat protein, human WDR44 family" ;
chromosome2 GeneDB CDS 1780014 1781774 . + . mRNA SPBC18H10.05 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 1781775 1781833 . + . mRNA SPBC18H10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.05" ; systematic_id "SPBC18H10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1781945 1781974 . - . mRNA SPBC18H10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.06c" ; systematic_id "SPBC18H10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1781975 1783156 . - . mRNA SPBC18H10.06c ; systematic_id "SPBC18H10.06c" ; colour "2" ; gene "swd2 ||| swd2.1 ||| SPBC18H10.06c" ; note "S. pombe paralogues are functionally diverged, S. cerevisiae YKL018W is a member of both CPF and SET1 complex (PMID 14617822)" ; Alias "swd2" ; db_xref "SPD:18/18G03" ; synonym "swd2.1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0016571; histone methylation
GO:0000790; nuclear chromatin
GO:0051568; histone H3-K4 methylation" ; primary_name "swd2" ; product "Set1C complex subunit Swd2.1" ;
chromosome2 GeneDB CDS 1781975 1782607 . - . mRNA SPBC18H10.06c ; colour "2" ;
chromosome2 GeneDB CDS 1782656 1782920 . - . mRNA SPBC18H10.06c ; colour "2" ;
chromosome2 GeneDB CDS 1782981 1783156 . - . mRNA SPBC18H10.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 1782608 1782625 . - . misc_feature unknown_1373 ; colour "6" ; note "ctaactaggaatacgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1782650 1782655 . - . misc_feature unknown_1374 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1782921 1782942 . - . misc_feature unknown_1375 ; colour "6" ; note "ctaactgaccatgaacttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1782975 1782980 . - . misc_feature unknown_1376 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1783155 1783260 . - . mRNA SPBC18H10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.06c" ; systematic_id "SPBC18H10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1783259 1784006 . + . mRNA SPBC18H10.07 ; db_xref "SPD:09/09B05" ; systematic_id "SPBC18H10.07" ; colour "7" ; GO "GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human WBP4 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC18H10.07" ; product "WW domain-binding protein 4 (predicted)" ;
chromosome2 GeneDB CDS 1783259 1783312 . + . mRNA SPBC18H10.07 ; colour "7" ;
chromosome2 GeneDB CDS 1783386 1784006 . + . mRNA SPBC18H10.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 1783313 1783318 . + . misc_feature unknown_1377 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1783374 1783385 . + . misc_feature unknown_1378 ; colour "6" ; note "ctaacagtacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1783861 1784218 . - . mRNA SPBC18H10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.08c" ; systematic_id "SPBC18H10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1784219 1786248 . - . mRNA SPBC18H10.08c ; systematic_id "SPBC18H10.08c" ; colour "2" ; gene "SPBC18H10.08c ||| ubp4" ; db_xref "SPD:44/44C04" ; Alias "ubp4" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR069C and YER144C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090910 ||| term=human ortholog USP8; date=20101001" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0030133; transport vesicle
GO:0032153; cell division site
GO:0005768; endosome
GO:0005515; protein binding" ; primary_name "ubp4" ; product "ubiquitin C-terminal hydrolase Ubp4" ;
chromosome2 GeneDB CDS 1784219 1785748 . - . mRNA SPBC18H10.08c ; colour "2" ;
chromosome2 GeneDB CDS 1785937 1786080 . - . mRNA SPBC18H10.08c ; colour "2" ;
chromosome2 GeneDB CDS 1786141 1786248 . - . mRNA SPBC18H10.08c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1785534 1785733 . - . mRNA SPBC18H10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.08c" ; systematic_id "SPBC18H10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1786501 1786595 . + . mRNA SPBC18H10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.09" ; systematic_id "SPBC18H10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1786596 1787917 . + . mRNA SPBC18H10.09 ; db_xref "SPD:23/23A06" ; systematic_id "SPBC18H10.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-CHY; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBC18H10.09" ; product "zf-CHY type zinc finger protein" ;
chromosome2 GeneDB CDS 1786596 1787607 . + . mRNA SPBC18H10.09 ; colour "10" ;
chromosome2 GeneDB CDS 1787643 1787917 . + . mRNA SPBC18H10.09 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 1787004 1788046 . - . mRNA SPBC18H10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.10c" ; systematic_id "SPBC18H10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1787608 1787613 . + . misc_feature unknown_1379 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1787632 1787642 . + . misc_feature unknown_1380 ; colour "6" ; note "ttaacaatcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1787918 1787938 . + . mRNA SPBC18H10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.09" ; systematic_id "SPBC18H10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1788047 1789031 . - . mRNA SPBC18H10.10c ; systematic_id "SPBC18H10.10c" ; colour "7" ; gene "saf4 ||| SPBC18H10.10c" ; Alias "saf4" ; obsolete_name "cwf16 ||| cwc16" ; db_xref "SPD:14/14C08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CCDC130 ortholog; date=20090922" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "saf4" ; product "splicing associated factor Saf4 (predicted)" ; reserved_name "saf4" ;
chromosome2 GeneDB CDS 1788047 1788436 . - . mRNA SPBC18H10.10c ; colour "7" ;
chromosome2 GeneDB CDS 1788492 1788740 . - . mRNA SPBC18H10.10c ; colour "7" ;
chromosome2 GeneDB CDS 1788786 1789031 . - . mRNA SPBC18H10.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 1788437 1788452 . - . misc_feature unknown_1381 ; colour "6" ; note "ctaacccataacttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1788486 1788491 . - . misc_feature unknown_1382 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1788741 1788753 . - . misc_feature unknown_1383 ; colour "6" ; note "ctgacataaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1788780 1788785 . - . misc_feature unknown_1384 ; colour "6" ; note "gtactg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1789030 1789088 . - . mRNA SPBC18H10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.10c" ; systematic_id "SPBC18H10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1789361 1789383 . - . mRNA SPBC18H10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.11c" ; systematic_id "SPBC18H10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1789384 1790682 . - . mRNA SPBC18H10.11c ; db_xref "SPD:22/22E10" ; systematic_id "SPBC18H10.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PPR domains; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC18H10.11c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1789384 1790682 . - . mRNA SPBC18H10.11c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 1790681 1790736 . - . mRNA SPBC18H10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.11c" ; systematic_id "SPBC18H10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1791010 1791018 . - . mRNA SPBC18H10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.12c" ; systematic_id "SPBC18H10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1791019 1792215 . - . mRNA SPBC18H10.12c ; systematic_id "SPBC18H10.12c" ; colour "2" ; gene "rpl701 ||| SPBC18H10.12c" ; Alias "rpl701" ; obsolete_name "rpl702 ||| rpl7-2" ; db_xref "SPD:40/40D05" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL076C and YPL198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=warning, primary name changed; cv=warning; date=20100217 ||| term=warning, ncRNA in intron; cv=warning; date=20100217" ; primary_name "rpl701" ; product "60S ribosomal protein L7" ;
chromosome2 GeneDB CDS 1791019 1791645 . - . mRNA SPBC18H10.12c ; colour "2" ;
chromosome2 GeneDB CDS 1792087 1792215 . - . mRNA SPBC18H10.12c ; colour "2" ;
chromosome2 GeneDB misc_feature 1791646 1791666 . - . misc_feature unknown_1385 ; colour "6" ; note "tgtattaactgttatgtttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1791646 1792086 . - . intron SPBC18H10.12c ; systematic_id "SPBC18H10.12c" ; note "confirmed by mRNA" ;
chromosome2 GeneDB snoRNA 1791743 1791820 . - . snoRNA SPSNORNA.24 ; Alias "snoR39b" ; systematic_id "SPSNORNA.24" ; synonym "snoR39 ||| snR39" ; controlled_curation "term=orthologous to S. cerevisiae snR39b; date=20070104 ||| term=warning, ncRNA in intron; date=20100426" ; primary_name "snoR39b" ; gene "snoR39b ||| SPSNORNA.24" ; product "small nucleolar RNA R39b (predicted)" ;
chromosome2 GeneDB misc_feature 1792081 1792086 . - . misc_feature unknown_1386 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1792214 1792223 . - . mRNA SPBC18H10.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.12c" ; systematic_id "SPBC18H10.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1792384 1792803 . + . mRNA SPBC18H10.13 ; systematic_id "SPBC18H10.13" ; colour "7" ; gene "rps1402 ||| rps14-2 ||| SPBC18H10.13" ; Alias "rps1402" ; db_xref "SPD:03/03D02" ; synonym "rps14-2" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR031C and YJL191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps1402" ; product "40S ribosomal protein S14 (predicted)" ;
chromosome2 GeneDB CDS 1792384 1792803 . + . mRNA SPBC18H10.13 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1792804 1792886 . + . mRNA SPBC18H10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.13" ; systematic_id "SPBC18H10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1793928 1793946 . + . mRNA SPBC18H10.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.14" ; systematic_id "SPBC18H10.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1793947 1794540 . + . mRNA SPBC18H10.14 ; systematic_id "SPBC18H10.14" ; colour "7" ; gene "rps1601 ||| rps16-1 ||| SPBC18H10.14" ; Alias "rps1601" ; synonym "rps16-1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL083C and YMR143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; primary_name "rps1601" ; product "40S ribosomal protein S16 (predicted)" ;
chromosome2 GeneDB CDS 1793947 1794321 . + . mRNA SPBC18H10.14 ; colour "7" ;
chromosome2 GeneDB CDS 1794493 1794540 . + . mRNA SPBC18H10.14 ; colour "7" ;
chromosome2 GeneDB misc_feature 1794322 1794327 . + . misc_feature unknown_1387 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 1794322 1794492 . + . intron SPBC18H10.14 ; systematic_id "SPBC18H10.14" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1794476 1794492 . + . misc_feature unknown_1388 ; colour "6" ; note "ctaatgattttttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1794541 1794755 . + . mRNA SPBC18H10.14 ; ID "SPBC18H10.14" ; systematic_id "SPBC18H10.14" ; note "mRNA from AB017604" ;
chromosome2 GeneDB 5'-UTR 1795030 1795239 . + . mRNA SPBC18H10.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.15" ; systematic_id "SPBC18H10.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1795240 1796494 . + . mRNA SPBC18H10.15 ; systematic_id "SPBC18H10.15" ; colour "2" ; gene "ppk23 ||| SPBC18H10.15" ; Alias "ppk23" ; db_xref "SPD:20/20A05" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ppk23" ; product "serine/threonine protein kinase Ppk23" ;
chromosome2 GeneDB CDS 1795240 1796094 . + . mRNA SPBC18H10.15 ; colour "2" ;
chromosome2 GeneDB CDS 1796153 1796494 . + . mRNA SPBC18H10.15 ; colour "2" ;
chromosome2 GeneDB misc_feature 1796095 1796100 . + . misc_feature unknown_1389 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1796136 1796152 . + . misc_feature unknown_1390 ; colour "6" ; note "ctaacaataatattaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1796495 1796517 . + . mRNA SPBC18H10.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.15" ; systematic_id "SPBC18H10.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1796953 1797013 . + . mRNA SPBC18H10.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.16" ; systematic_id "SPBC18H10.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1797014 1800212 . + . mRNA SPBC18H10.16 ; systematic_id "SPBC18H10.16" ; colour "2" ; gene "can1 ||| SPBC18H10.16" ; note "identification of SPBC18H10.16 as can1, pers. comm. Charlie Hoffman" ; Alias "can1" ; db_xref "SPD:48/48A04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR235W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, ubiquitinated; evidence=IDA; db_xref=PMID:20838651; date=20101001" ; GO "GO:0022857; transmembrane transporter activity
GO:0005886; plasma membrane
GO:0015809; arginine transport
GO:0015181; arginine transmembrane transporter activity" ; primary_name "can1" ; product "arginine transporter Can1" ;
chromosome2 GeneDB CDS 1797014 1798754 . + . mRNA SPBC18H10.16 ; colour "2" ;
chromosome2 GeneDB CDS 1798801 1800212 . + . mRNA SPBC18H10.16 ; colour "2" ;
chromosome2 GeneDB misc_feature 1798755 1798760 . + . misc_feature unknown_1391 ; note "gcatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1798783 1798800 . + . misc_feature unknown_1392 ; colour "6" ; note "ctaacccataaattatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1800213 1800362 . + . mRNA SPBC18H10.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.16" ; systematic_id "SPBC18H10.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1800250 1800730 . - . mRNA SPBC18H10.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.17c" ; systematic_id "SPBC18H10.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1800731 1801258 . - . mRNA SPBC18H10.17c ; db_xref "SPD:05/05C10" ; systematic_id "SPBC18H10.17c" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000150; recombinase activity
GO:0003697; single-stranded DNA binding
GO:0006310; DNA recombination
GO:0000002; mitochondrial genome maintenance
GO:0006355; regulation of transcription, DNA dependent
GO:0030528; transcription regulator activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR296W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC18H10.17c" ; product "mitochondrial recombinase Mhr1 (predicted)" ;
chromosome2 GeneDB CDS 1800731 1801258 . - . mRNA SPBC18H10.17c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1801257 1801302 . - . mRNA SPBC18H10.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.17c" ; systematic_id "SPBC18H10.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1802123 1802355 . - . mRNA SPBC18H10.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.18c" ; systematic_id "SPBC18H10.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1802356 1803129 . - . mRNA SPBC18H10.18c ; db_xref "SPD:51/51C01" ; systematic_id "SPBC18H10.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPCC1682.06; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC18H10.18c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1802356 1802693 . - . mRNA SPBC18H10.18c ; colour "8" ;
chromosome2 GeneDB CDS 1802739 1803129 . - . mRNA SPBC18H10.18c ; colour "8" ;
chromosome2 GeneDB misc_feature 1802694 1802708 . - . misc_feature unknown_1393 ; colour "6" ; note "ctaacgattttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1802733 1802738 . - . misc_feature unknown_1394 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1803128 1803286 . - . mRNA SPBC18H10.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.18c" ; systematic_id "SPBC18H10.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1804695 1805092 . + . misc_RNA SPNCRNA.377 ; db_xref "PMID:18488015" ; synonym "SPNG1513" ; systematic_id "SPNCRNA.377" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB LTR 1805772 1806127 . + . LTR unknown_1395 ; colour "4" ; note "Tf1 or Tf2 type ltr" ;
chromosome2 GeneDB misc_feature 1806262 1808222 . + . misc_feature SPBC18H10.19 ; colour "6" ; gene "SPBC18H10.19" ; product "hypothetical protein; Pfam-B_13432 a coiled-coil domain also in human UVRAG a protein Confers UV radiation resistance to a xeroderma pigmentosum cell line; no apparent S. cerevisiae ortholog" ;
chromosome2 GeneDB intron 1806691 1806728 . + . intron unknown_1396 ;
chromosome2 GeneDB CDS_parts 1807057 1807980 . + . mRNA SPBC18H10.19 ; systematic_id "SPBC18H10.19" ; colour "7" ; note "could have a few N-terminal exons, but can't make alternative gene structure, perhaps has a sequencing error?" ; db_xref "SPD:12/12H03" ; Alias "atg14" ; GO "GO:0032258; CVT pathway
GO:0030433; ER-associated protein catabolic process
GO:0016236; macroautophagy
GO:0000407; pre-autophagosomal structure
GO:0000329; fungal-type vacuole membrane
GO:0005942; phoshatidylinositol 3-kinase complex" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YBR128C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ATG14 ortholog; date=20100122" ; primary_name "atg14" ; product "autophagy specific phophatidylinositol 3-kinase complex subunit Atg14 (predicted)" ;
chromosome2 GeneDB CDS 1807057 1807980 . + . mRNA SPBC18H10.19 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1807981 1808123 . + . mRNA SPBC18H10.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.19" ; systematic_id "SPBC18H10.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1808336 1808401 . - . mRNA SPBC18H10.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.20c" ; systematic_id "SPBC18H10.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1808402 1809487 . - . mRNA SPBC18H10.20c ; db_xref "SPD:16/16H08" ; systematic_id "SPBC18H10.20c" ; colour "7" ; GO "GO:0031625; ubiquitin protein ligase binding
GO:0070086; ubiquitin-dependent endocytosis
GO:0030136; clathrin-coated vesicle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC18H10.20c" ; product "endocytosis regulator (predicted)" ;
chromosome2 GeneDB CDS 1808402 1809487 . - . mRNA SPBC18H10.20c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1809486 1810318 . - . mRNA SPBC18H10.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18H10.20c" ; systematic_id "SPBC18H10.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1810360 1813425 . + . misc_feature unknown_1397 ; note "nominal overlap with cosmid SPBC18H10 and cosmid SPBC9B6" ;
chromosome2 GeneDB misc_feature 1811244 1812272 . - . misc_feature SPBC18H10.21c ; db_xref "SPD:15/15E07" ; systematic_id "SPBC18H10.21c" ; synonym "SPBC9B6.01c" ; controlled_curation "term=dubious; date=19700101 ||| term=strange gene structure with non- consensus intron; date=19700101" ; colour "6" ; gene "SPBC18H10.21c ||| SPBC9B6.01c" ; product "dubious" ; note "removed, not confirmed by Solexa intron data" ;
chromosome2 GeneDB misc_feature 1811538 1811556 . - . misc_feature unknown_1398 ; colour "6" ; note "cttacattcactctgtcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1812087 1812092 . - . misc_feature unknown_1399 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1812344 1817267 . - . misc_feature Tf2-9 ; db_xref "SO:0000186" ; systematic_id "Tf2-9" ; note "LTR-retrotransposon" ;
chromosome2 GeneDB LTR 1812349 1812697 . - . LTR unknown_1400 ; colour "4" ; note "Tf2 type ltr ||| Tf2-type LTR" ;
chromosome2 GeneDB misc_feature 1812349 1813425 . - . misc_feature unknown_1401 ; note "retrotransposable element tf2 155 kD- see cosmid c9B6 for full length entry" ;
chromosome2 GeneDB CDS_parts 1812748 1816749 . - . mRNA SPBC9B6.02c ; systematic_id "SPBC9B6.02c" ; colour "4" ; gene "Tf2-9 ||| SPBC9B6.02c" ; Alias "Tf2-9" ; db_xref "SPD:34/34B01" ; synonym "SPBC9B6.02" ; controlled_curation "term=tf2-type transposon; date=19700101" ; primary_name "Tf2-9" ; product "retrotransposable element" ;
chromosome2 GeneDB CDS 1812748 1816749 . - . mRNA SPBC9B6.02c ; colour "4" ;
chromosome2 GeneDB LTR 1816914 1817262 . - . LTR unknown_1402 ; note "Tf2-type LTR" ;
chromosome2 GeneDB CDS_parts 1818277 1819158 . + . mRNA SPBC9B6.03 ; systematic_id "SPBC9B6.03" ; colour "10" ; gene "SPBC9B6.03" ; note "reciprocal best hit of PIB2, but has a much shorter N terminal low complexity region. There is a possibility there is additional N-terminal splicing" ; db_xref "SPD:11/11H10" ; GO "GO:0035091; phosphoinositide binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=orthologous to S. cerevisiae YGL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; product "zf-FYVE type zinc finger protein" ;
chromosome2 GeneDB CDS 1818277 1819158 . + . mRNA SPBC9B6.03 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 1819886 1820038 . - . mRNA SPBC9B6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.04c" ; systematic_id "SPBC9B6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1820039 1821409 . - . mRNA SPBC9B6.04c ; systematic_id "SPBC9B6.04c" ; colour "2" ; gene "tuf1 ||| SPBC9B6.04c" ; Alias "tuf1" ; db_xref "SPD:21/21C03" ; GO "GO:0005759; mitochondrial matrix
GO:0003746; translation elongation factor activity
GO:0006414; translational elongation
GO:0005525; GTP binding
GO:0000049; tRNA binding
GO:0003924; GTPase activity
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15695360; date=19700101 ||| term=orthologous to S. cerevisiae YOR187W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tuf1" ; product "mitochondrial translation elongation factor EF- Tu Tuf1" ;
chromosome2 GeneDB CDS 1820039 1821223 . - . mRNA SPBC9B6.04c ; colour "2" ;
chromosome2 GeneDB CDS 1821275 1821409 . - . mRNA SPBC9B6.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 1821224 1821237 . - . misc_feature unknown_1403 ; colour "6" ; note "ttaacttttttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1821269 1821274 . - . misc_feature unknown_1404 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1821408 1821433 . - . mRNA SPBC9B6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.04c" ; systematic_id "SPBC9B6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1821701 1822125 . - . mRNA SPBC9B6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.05c" ; systematic_id "SPBC9B6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1822126 1822673 . - . mRNA SPBC9B6.05c ; systematic_id "SPBC9B6.05c" ; colour "7" ; gene "lsm3 ||| SPBC9B6.05c" ; Alias "lsm3" ; db_xref "SPD:05/05E12" ; GO "GO:0003723; RNA binding
GO:0006402; mRNA catabolism
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0006364; rRNA processing
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005688; snRNP U6" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR438C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "lsm3" ; product "U6 snRNP-associated protein Lsm3 (predicted)" ;
chromosome2 GeneDB CDS 1822126 1822163 . - . mRNA SPBC9B6.05c ; colour "7" ;
chromosome2 GeneDB CDS 1822265 1822379 . - . mRNA SPBC9B6.05c ; colour "7" ;
chromosome2 GeneDB CDS 1822434 1822451 . - . mRNA SPBC9B6.05c ; colour "7" ;
chromosome2 GeneDB CDS 1822522 1822614 . - . mRNA SPBC9B6.05c ; colour "7" ;
chromosome2 GeneDB CDS 1822656 1822673 . - . mRNA SPBC9B6.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 1822164 1822177 . - . misc_feature unknown_1405 ; colour "6" ; note "ctaatgaactttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1822259 1822264 . - . misc_feature unknown_1406 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1822380 1822395 . - . misc_feature unknown_1407 ; colour "6" ; note "cttacacgtattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1822428 1822433 . - . misc_feature unknown_1408 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1822452 1822466 . - . misc_feature unknown_1409 ; colour "6" ; note "ctaactcgattgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1822516 1822521 . - . misc_feature unknown_1410 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1822615 1822627 . - . misc_feature unknown_1411 ; colour "6" ; note "ctaatgtttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1822650 1822655 . - . misc_feature unknown_1412 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1822672 1822693 . - . mRNA SPBC9B6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.05c" ; systematic_id "SPBC9B6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1822915 1823037 . + . mRNA SPBC9B6.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.06" ; systematic_id "SPBC9B6.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1823038 1823700 . + . mRNA SPBC9B6.06 ; systematic_id "SPBC9B6.06" ; colour "7" ; gene "SPBC9B6.06 ||| mrpl10" ; Alias "mrpl10" ; db_xref "SPD:42/42G10" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL284C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl10" ; product "mitochondrial ribosomal protein subunit L15 (predicted)" ;
chromosome2 GeneDB CDS 1823038 1823700 . + . mRNA SPBC9B6.06 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1823701 1823957 . + . mRNA SPBC9B6.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.06" ; systematic_id "SPBC9B6.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1824562 1825497 . + . mRNA SPBC9B6.07 ; systematic_id "SPBC9B6.07" ; colour "7" ; gene "SPBC9B6.07 ||| nop52" ; Alias "nop52" ; db_xref "SPD:13/13B03" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nop52" ; product "nucleolar protein Nop52 family (predicted)" ;
chromosome2 GeneDB CDS 1824562 1824604 . + . mRNA SPBC9B6.07 ; colour "7" ;
chromosome2 GeneDB CDS 1824649 1824756 . + . mRNA SPBC9B6.07 ; colour "7" ;
chromosome2 GeneDB CDS 1824813 1825101 . + . mRNA SPBC9B6.07 ; colour "7" ;
chromosome2 GeneDB CDS 1825284 1825497 . + . mRNA SPBC9B6.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 1824605 1824610 . + . misc_feature unknown_1413 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1824636 1824648 . + . misc_feature unknown_1414 ; colour "6" ; note "ctaacactgtaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1824757 1824762 . + . misc_feature unknown_1415 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1824802 1824812 . + . misc_feature unknown_1416 ; colour "6" ; note "ttaatatgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1825102 1825107 . + . misc_feature unknown_1417 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1825270 1825283 . + . misc_feature unknown_1418 ; colour "6" ; note "ctaactgcttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1825498 1825552 . + . mRNA SPBC9B6.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.07" ; systematic_id "SPBC9B6.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 1825787 1825858 . - . tRNA SPBTRNAPRO.04 ; systematic_id "SPBTRNAPRO.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033448; AGG codon-amino acid adaptor activity" ; gene "SPBTRNAPRO.04" ; product "tRNA Proline" ; note "tRNA Pro anticodon AGG" ;
chromosome2 GeneDB LTR 1826267 1826606 . + . LTR unknown_1419 ; note "Tf2-type LTR" ;
chromosome2 GeneDB 5'-UTR 1827150 1827162 . + . mRNA SPBC9B6.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.08" ; systematic_id "SPBC9B6.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1827163 1827852 . + . mRNA SPBC9B6.08 ; systematic_id "SPBC9B6.08" ; colour "2" ; gene "clc1 ||| SPBC9B6.08" ; Alias "clc1" ; db_xref "SPD:40/40A04" ; GO "GO:0030125; clathrin vesicle coat
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR167W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "clc1" ; product "clathrin light chain" ;
chromosome2 GeneDB CDS 1827163 1827852 . + . mRNA SPBC9B6.08 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1827853 1828198 . + . mRNA SPBC9B6.08 ; ID "SPBC9B6.08" ; systematic_id "SPBC9B6.08" ; note "mRNA from AU012832" ;
chromosome2 GeneDB 3'-UTR 1828521 1828659 . - . mRNA SPBC9B6.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.09c" ; systematic_id "SPBC9B6.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1828660 1830840 . - . mRNA SPBC9B6.09c ; systematic_id "SPBC9B6.09c" ; colour "2" ; gene "mdl1 ||| SPBC9B6.09c" ; Alias "mdl1" ; db_xref "SPD:37/37G12" ; GO "GO:0005743; mitochondrial inner membrane
GO:0005739; mitochondrion
GO:0015440; peptide-transporting ATPase activity
GO:0006839; mitochondrial transport
GO:0006857; oligopeptide transport
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YLR188W and YPL270W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mdl1" ; product "mitochondrial peptide-transporting ATPase" ;
chromosome2 GeneDB CDS 1828660 1830840 . - . mRNA SPBC9B6.09c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1830839 1831050 . - . mRNA SPBC9B6.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.09c" ; systematic_id "SPBC9B6.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1831105 1831188 . + . mRNA SPBC9B6.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.10" ; systematic_id "SPBC9B6.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1831189 1833020 . + . mRNA SPBC9B6.10 ; systematic_id "SPBC9B6.10" ; colour "2" ; gene "cdc37 ||| SPBC9B6.10" ; Alias "cdc37" ; db_xref "SPD:40/40G03" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0031072; heat shock protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0006457; protein folding
GO:0007346; regulation of mitotic cell cycle
GO:0070304; positive regulation of stress- activated protein kinase signaling pathway
GO:0061077; chaperone-mediated protein folding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14652737; date=19700101 ||| term=phenotype, cut; db_xref=PMID:14652737; date=20100630 ||| term=orthologous to S. cerevisiae YDR168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=misc functional group, chaperone; cv=m_f_g; date=20100126" ; primary_name "cdc37" ; product "Hsp90 co-chaperone Cdc37" ;
chromosome2 GeneDB CDS 1831189 1831211 . + . mRNA SPBC9B6.10 ; colour "2" ;
chromosome2 GeneDB CDS 1831272 1831298 . + . mRNA SPBC9B6.10 ; colour "2" ;
chromosome2 GeneDB CDS 1831628 1831638 . + . mRNA SPBC9B6.10 ; colour "2" ;
chromosome2 GeneDB CDS 1831681 1833020 . + . mRNA SPBC9B6.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 1831212 1831217 . + . misc_feature unknown_1420 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1831256 1831271 . + . misc_feature unknown_1421 ; colour "6" ; note "ttaacagaattgacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1831299 1831304 . + . misc_feature unknown_1422 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1831614 1831627 . + . misc_feature unknown_1423 ; colour "6" ; note "ctaacaacatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1831639 1831644 . + . misc_feature unknown_1424 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1831667 1831680 . + . misc_feature unknown_1425 ; colour "6" ; note "ttaaccacatgcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1833021 1833130 . + . mRNA SPBC9B6.10 ; ID "SPBC9B6.10" ; systematic_id "SPBC9B6.10" ; note "mRNA from SPO132376" ;
chromosome2 GeneDB 3'-UTR 1833148 1833166 . - . mRNA SPBC9B6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.11c" ; systematic_id "SPBC9B6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1833167 1834804 . - . mRNA SPBC9B6.11c ; systematic_id "SPBC9B6.11c" ; colour "7" ; gene "SPBC9B6.11c" ; note "NOTE the exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript function performed by the S. cerevisiae ortholog NRG2 is performend by non orthologous eri1 in pombe PMID: 18438419" ; db_xref "SPD:26/26B05" ; GO "GO:0004521; endoribonuclease activity
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML118W and YMR285C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "CCR4/nocturin family endoribonuclease (predicted)" ;
chromosome2 GeneDB CDS 1833167 1834449 . - . mRNA SPBC9B6.11c ; colour "7" ;
chromosome2 GeneDB CDS 1834579 1834804 . - . mRNA SPBC9B6.11c ; colour "7" ;
chromosome2 GeneDB misc_feature 1834358 1834804 . - . misc_feature unknown_1426 ; note "see c9B6 SPAC9B6.11c for full length CDS" ;
chromosome2 GeneDB misc_feature 1834358 1838358 . - . misc_feature unknown_1427 ; note "nominal overlap with cosmid SPBC9B6, EM:AL049769 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 1834358 1838358 . + . misc_feature unknown_1428 ; note "nominal overlap with cosmid SPBC28E12, EM:AL031517 S.pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 1834450 1834460 . - . misc_feature unknown_1429 ; colour "6" ; note "ctgattattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1834573 1834578 . - . misc_feature unknown_1430 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1834803 1834848 . - . mRNA SPBC9B6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC9B6.11c" ; systematic_id "SPBC9B6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1834888 1835295 . - . mRNA SPBC28E12.01c ; systematic_id "SPBC28E12.01c" ; colour "2" ; gene "apc13 ||| SPBC9B6.12c ||| SPBC28E12.01c" ; Alias "apc13" ; db_xref "SPD:03/03B09" ; synonym "SPBC9B6.12c" ; GO "GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR260C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "apc13" ; product "anaphase-promoting complex subunit Apc13" ;
chromosome2 GeneDB CDS 1834888 1835295 . - . mRNA SPBC28E12.01c ; colour "2" ;
chromosome2 GeneDB CDS_parts 1836327 1838318 . + . mRNA SPBC28E12.02 ; systematic_id "SPBC28E12.02" ; colour "10" ; gene "SPBC9B6.13 ||| SPBC28E12.02" ; Alias "SPBC9B6.13" ; db_xref "SPD:27/27D02" ; synonym "SPBC9B6.13" ; GO "GO:0005737; cytoplasm
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=KH domain; date=19700101 ||| term=orthologous to S. cerevisiae YLL032C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPBC9B6.13" ; product "RNA-binding protein" ;
chromosome2 GeneDB CDS 1836327 1838318 . + . mRNA SPBC28E12.02 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 1839411 1839622 . + . mRNA SPBC28E12.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28E12.03" ; systematic_id "SPBC28E12.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1839623 1842766 . + . mRNA SPBC28E12.03 ; systematic_id "SPBC28E12.03" ; colour "2" ; gene "rga4 ||| SPBC28E12.03" ; Alias "rga4" ; db_xref "SPD:30/30B03" ; GO "GO:0032153; cell division site
GO:0005737; cytoplasm
GO:0005100; Rho GTPase activator activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032231; regulation of actin filament bundle formation
GO:0070650; actin filament bubdle distribution
; regulation of actin cortical patch localization
GO:0034613; cellular protein localization
GO:0032956; regulation of actin cytoskeleton organization
GO:0032319; regulation of Rho GTPase activity
GO:0060305; regulation of cell diameter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:11737264; date=20100917 ||| term=LIM domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR127W and YDR379W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17377067; date=20080430 ||| term=target is Cdc42; db_xref=PMID:18328707; date=20080430 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18328707; date=20090213" ; primary_name "rga4" ; product "Rho-type GTPase activating protein Rga4" ;
chromosome2 GeneDB CDS 1839623 1839709 . + . mRNA SPBC28E12.03 ; colour "2" ;
chromosome2 GeneDB CDS 1839847 1839902 . + . mRNA SPBC28E12.03 ; colour "2" ;
chromosome2 GeneDB CDS 1840045 1840394 . + . mRNA SPBC28E12.03 ; colour "2" ;
chromosome2 GeneDB CDS 1840458 1842766 . + . mRNA SPBC28E12.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 1839997 1840002 . + . misc_feature unknown_1431 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1840024 1840044 . + . misc_feature unknown_1432 ; colour "6" ; note "ctaattaagacggtttgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1840395 1840400 . + . misc_feature unknown_1433 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1840442 1840457 . + . misc_feature unknown_1434 ; colour "6" ; note "ctaactttaattttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1842767 1843042 . + . mRNA SPBC28E12.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28E12.03" ; systematic_id "SPBC28E12.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1843428 1843460 . + . mRNA SPBC28E12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28E12.04" ; systematic_id "SPBC28E12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1843461 1844531 . + . mRNA SPBC28E12.04 ; db_xref "SPD:16/16E06" ; systematic_id "SPBC28E12.04" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC28E12.04" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1843461 1844531 . + . mRNA SPBC28E12.04 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1844532 1844864 . + . mRNA SPBC28E12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28E12.04" ; systematic_id "SPBC28E12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1845076 1845161 . + . mRNA SPBC28E12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28E12.05" ; systematic_id "SPBC28E12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1845162 1846166 . + . mRNA SPBC28E12.05 ; systematic_id "SPBC28E12.05" ; colour "7" ; gene "esf2 ||| SPBC28E12.05 ||| SPBC3H7.17c" ; Alias "esf2" ; db_xref "SPD:14/14G11" ; synonym "SPBC3H7.17c" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YNR054C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "esf2" ; product "U3 snoRNP-associated protein Esf2 (predicted)" ;
chromosome2 GeneDB CDS 1845162 1846166 . + . mRNA SPBC28E12.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 1845274 1847357 . + . misc_feature unknown_1435 ; note "nominal overlap with cosmid SPBC28E12, EM:AL031517 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 1845274 1847357 . - . misc_feature unknown_1436 ; note "nominal overlap with cosmid SPBC3H7, EM:AL031261 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 1846167 1846230 . + . mRNA SPBC28E12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28E12.05" ; systematic_id "SPBC28E12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1846434 1854263 . - . mRNA SPBC28E12.06c ; systematic_id "SPBC28E12.06c" ; colour "7" ; gene "SPBC28E12.06c ||| SPBC3H7.16 ||| lvs1" ; Alias "lvs1" ; db_xref "SPD:34/34D02" ; synonym "SPBC3H7.16" ; GO "GO:0005737; cytoplasm
GO:0000324; vacuole
GO:0035091; phosphoinositide binding
GO:0009268; response to pH
GO:0007034; vacuolar transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=orthologous to S. cerevisiae YCR032W; date=19700101 ||| term=disease associated, Chediak- Higashi syndrome; date=19700101 ||| term=disease associated, neurological disorders; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human LYST1 ortholog; date=20100222" ; primary_name "lvs1" ; product "beige protein homolog (predicted)" ; reserved_name "lvs1" ;
chromosome2 GeneDB CDS 1846434 1854263 . - . mRNA SPBC28E12.06c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1854262 1854538 . - . mRNA SPBC28E12.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC28E12.06c" ; systematic_id "SPBC28E12.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1854753 1855588 . - . mRNA SPBC3H7.15 ; Alias "hhp1" ; ID "SPBC3H7.15" ; db_xref "EMBL:X78871" ; systematic_id "SPBC3H7.15" ; primary_name "hhp1" ;
chromosome2 GeneDB CDS_parts 1855589 1856808 . - . mRNA SPBC3H7.15 ; systematic_id "SPBC3H7.15" ; colour "2" ; gene "hhp1 ||| SPBC3H7.15" ; Alias "hhp1" ; db_xref "SPD:40/40D07" ; GO "GO:0033551; monopolin complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0045143; homologous chromosome segregation
GO:0006468; protein amino acid phosphorylation
GO:0006282; regulation of DNA repair
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:8026462; date=20100709 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8026462; date=19700101 ||| term=casein kinase I subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YPL204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "hhp1" ; product "serine/threonine protein kinase Hhp1" ;
chromosome2 GeneDB CDS 1855589 1855795 . - . mRNA SPBC3H7.15 ; colour "2" ;
chromosome2 GeneDB CDS 1855918 1856808 . - . mRNA SPBC3H7.15 ; colour "2" ;
chromosome2 GeneDB misc_feature 1855796 1855813 . - . misc_feature unknown_1437 ; colour "6" ; note "ctaacatttaaattgtag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1855796 1855917 . - . intron SPBC3H7.15 ; Alias "hhp1" ; db_xref "EMBL:X78871" ; systematic_id "SPBC3H7.15" ; primary_name "hhp1" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1855912 1855917 . - . misc_feature unknown_1438 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1856809 1856882 . - . mRNA SPBC3H7.15 ; Alias "hhp1" ; ID "SPBC3H7.15" ; systematic_id "SPBC3H7.15" ; primary_name "hhp1" ; note "mRNA from SP10863" ;
chromosome2 GeneDB 3'-UTR 1857235 1857762 . - . mRNA SPBC3H7.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.14" ; systematic_id "SPBC3H7.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1857763 1858983 . - . mRNA SPBC3H7.14 ; systematic_id "SPBC3H7.14" ; colour "10" ; gene "SPBC3H7.14 ||| mug176" ; note "appears to be related to microcephalin, possible ortholog" ; Alias "mug176" ; db_xref "SPD:19/19D09" ; GO "GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908" ; primary_name "mug176" ; product "BRCT domain protein" ;
chromosome2 GeneDB CDS 1857763 1858983 . - . mRNA SPBC3H7.14 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 1858982 1858996 . - . mRNA SPBC3H7.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.14" ; systematic_id "SPBC3H7.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1859878 1860193 . - . mRNA SPBC3H7.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.13" ; systematic_id "SPBC3H7.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1860194 1861099 . - . mRNA SPBC3H7.13 ; db_xref "SPD:12/12E02" ; systematic_id "SPBC3H7.13" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR238W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC3H7.13" ; product "FHA domain protein Far10 (predicted)" ;
chromosome2 GeneDB CDS 1860194 1861099 . - . mRNA SPBC3H7.13 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 1861098 1861253 . - . mRNA SPBC3H7.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.13" ; systematic_id "SPBC3H7.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1861638 1862165 . - . mRNA SPBC3H7.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.12" ; systematic_id "SPBC3H7.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1862166 1863029 . - . mRNA SPBC3H7.12 ; systematic_id "SPBC3H7.12" ; colour "2" ; gene "SPBC3H7.12 ||| rav2" ; Alias "rav2" ; db_xref "SPD:11/11E09" ; GO "GO:0043291; RAVE complex
GO:0071277; cellular response to calcium ion
GO:0042493; response to drug
GO:0007035; vacuolar acidification
GO:0070072; vacuolar proton-transporting two- sector ATPase complex assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR202C; db_xref=PMID:18441123; date=20080901 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rav2" ; product "RAVE complex subunit Rav2" ;
chromosome2 GeneDB CDS 1862166 1863029 . - . mRNA SPBC3H7.12 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1863028 1863115 . - . mRNA SPBC3H7.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.12" ; systematic_id "SPBC3H7.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1863337 1863367 . - . mRNA SPBC3H7.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.11" ; systematic_id "SPBC3H7.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1863368 1864186 . - . mRNA SPBC3H7.11 ; db_xref "SPD:10/10E08" ; systematic_id "SPBC3H7.11" ; colour "7" ; GO "GO:0051015; actin filament binding
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0005884; actin filament" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR239W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC3H7.11" ; product "actin binding methyltransferase (predicted)" ;
chromosome2 GeneDB CDS 1863368 1863826 . - . mRNA SPBC3H7.11 ; colour "7" ;
chromosome2 GeneDB CDS 1863899 1864186 . - . mRNA SPBC3H7.11 ; colour "7" ;
chromosome2 GeneDB misc_feature 1863827 1863847 . - . misc_feature unknown_1439 ; colour "6" ; note "ctaacctttgtcttaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1863893 1863898 . - . misc_feature unknown_1440 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1864471 1864519 . + . mRNA SPBC3H7.18 ; db_xref "PMID:21270388" ; systematic_id "SPBC3H7.18" ;
chromosome2 GeneDB CDS_parts 1864520 1864753 . + . mRNA SPBC3H7.18 ; Alias "tam8" ; systematic_id "SPBC3H7.18" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "tam8" ; gene "SPBC3H7.18" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1864520 1864753 . + . mRNA SPBC3H7.18 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1864754 1865385 . + . mRNA SPBC3H7.18 ; db_xref "PMID:21270388" ; systematic_id "SPBC3H7.18" ;
chromosome2 GeneDB CDS_parts 1864777 1865608 . - . mRNA SPBC3H7.10 ; db_xref "SPD:10/10G07" ; systematic_id "SPBC3H7.10" ; colour "7" ; GO "GO:0033588; Elongator holoenzyme complex
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR312W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC3H7.10" ; product "elongator complex subunit Elp6 (predicted)" ;
chromosome2 GeneDB CDS 1864777 1865331 . - . mRNA SPBC3H7.10 ; colour "7" ;
chromosome2 GeneDB CDS 1865414 1865608 . - . mRNA SPBC3H7.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 1865332 1865354 . - . misc_feature unknown_1441 ; colour "6" ; note "ctaacctactgaaccaatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1865408 1865413 . - . misc_feature unknown_1442 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1865607 1865654 . - . mRNA SPBC3H7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.10" ; systematic_id "SPBC3H7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1865977 1866396 . - . mRNA SPBC3H7.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.09" ; systematic_id "SPBC3H7.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1866397 1867449 . - . mRNA SPBC3H7.09 ; systematic_id "SPBC3H7.09" ; colour "2" ; gene "mug142 ||| SPBC3H7.09" ; Alias "mug142" ; db_xref "SPD:16/16B01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-DHHC type; date=19700101 ||| term=orthologous to S. cerevisiae YLR246W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0018345; protein amino acid palmitoylation
GO:0030437; sporulation (sensu Fungi)
GO:0031211; palmitoyltransferase complex
GO:0006612; protein targeting to membrane" ; primary_name "mug142" ; product "palmitoyltransferase (predicted)" ; EC_number "2.3.1.-" ;
chromosome2 GeneDB CDS 1866397 1867449 . - . mRNA SPBC3H7.09 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1867448 1867515 . - . mRNA SPBC3H7.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.09" ; systematic_id "SPBC3H7.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1869252 1869843 . + . mRNA SPBC3H7.08c ; db_xref "SPD:06/06E03" ; systematic_id "SPBC3H7.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC3H7.08c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1869252 1869320 . + . mRNA SPBC3H7.08c ; colour "10" ;
chromosome2 GeneDB CDS 1869390 1869441 . + . mRNA SPBC3H7.08c ; colour "10" ;
chromosome2 GeneDB CDS 1869602 1869843 . + . mRNA SPBC3H7.08c ; colour "10" ;
chromosome2 GeneDB misc_feature 1869321 1869326 . + . misc_feature unknown_1443 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1869371 1869389 . + . misc_feature unknown_1444 ; colour "6" ; note "ctgatcagtttgctgttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1869442 1869447 . + . misc_feature unknown_1445 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1869587 1869601 . + . misc_feature unknown_1446 ; colour "6" ; note "ctaacagttttttag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 1870281 1870333 . + . mRNA SPBC3H7.07c ; ID "SPBC3H7.07c" ; systematic_id "SPBC3H7.07c" ; note "mRNA from SPD261" ;
chromosome2 GeneDB CDS_parts 1870334 1871301 . + . mRNA SPBC3H7.07c ; systematic_id "SPBC3H7.07c" ; colour "7" ; gene "SPBC3H7.07c" ; Alias "ser2" ; db_xref "KEGG:MAP000260; ||| SPD:13/13G08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR208W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006564; L-serine biosynthesis
GO:0004647; phosphoserine phosphatase activity" ; primary_name "ser2" ; product "phosphoserine phosphatase Ser2 (predicted)" ; EC_number "3.1.3.3" ;
chromosome2 GeneDB CDS 1870334 1871131 . + . mRNA SPBC3H7.07c ; colour "7" ;
chromosome2 GeneDB CDS 1871203 1871301 . + . mRNA SPBC3H7.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 1871132 1871137 . + . misc_feature unknown_1447 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 1871132 1871202 . + . intron SPBC3H7.07c ; systematic_id "SPBC3H7.07c" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1871177 1871202 . + . misc_feature unknown_1448 ; colour "6" ; note "ctaactcgatttttttttttaattag, splice branch and accept or" ;
chromosome2 GeneDB 3'-UTR 1871302 1871749 . + . mRNA SPBC3H7.07c ; ID "SPBC3H7.07c" ; systematic_id "SPBC3H7.07c" ; note "mRNA from SPD261" ;
chromosome2 GeneDB CDS_parts 1871847 1873320 . + . mRNA SPBC3H7.06c ; systematic_id "SPBC3H7.06c" ; colour "2" ; gene "pof9 ||| SPBC3H7.06c" ; Alias "pof9" ; db_xref "SPD:23/23G08" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR280C; date=19700101 ||| term=regulator of condensation (RCC1) domains; date=20071202 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "pof9" ; product "F-box protein Pof9" ;
chromosome2 GeneDB CDS 1871847 1872211 . + . mRNA SPBC3H7.06c ; colour "2" ;
chromosome2 GeneDB CDS 1872282 1873320 . + . mRNA SPBC3H7.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 1872212 1872217 . + . misc_feature unknown_1449 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1872256 1872281 . + . misc_feature unknown_1450 ; colour "6" ; note "ctaactattccctatgcggaatttag, splice branch and accept or" ;
chromosome2 GeneDB 5'-UTR 1873513 1874458 . + . mRNA SPBC3H7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.05c" ; systematic_id "SPBC3H7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1874459 1875532 . + . mRNA SPBC3H7.05c ; db_xref "SPD:16/16E12" ; systematic_id "SPBC3H7.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC3H7.05c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1874459 1875532 . + . mRNA SPBC3H7.05c ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1875533 1875657 . + . mRNA SPBC3H7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.05c" ; systematic_id "SPBC3H7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1875770 1875896 . - . mRNA SPBC3H7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.04" ; systematic_id "SPBC3H7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1875897 1876559 . - . mRNA SPBC3H7.04 ; db_xref "SPD:07/07F05" ; systematic_id "SPBC3H7.04" ; colour "7" ; GO "GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR101W and YDR347W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC3H7.04" ; product "mitochondrial ribosomal protein subunit S26 (predicted)" ;
chromosome2 GeneDB CDS 1875897 1876559 . - . mRNA SPBC3H7.04 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1876558 1876761 . - . mRNA SPBC3H7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.04" ; systematic_id "SPBC3H7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 1877221 1877292 . + . tRNA SPBTRNAPRO.05 ; systematic_id "SPBTRNAPRO.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033448; AGG codon-amino acid adaptor activity" ; gene "SPBTRNAPRO.05" ; product "tRNA Proline" ; note "tRNA Pro anticodon AGG, Cove score 48.70" ;
chromosome2 GeneDB 5'-UTR 1880223 1880738 . + . mRNA SPBC3H7.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.03c" ; systematic_id "SPBC3H7.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1880739 1883768 . + . mRNA SPBC3H7.03c ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00310; ||| KEGG:MAP00380; ||| SPD:29/29H02" ; systematic_id "SPBC3H7.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, curved; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=disease associated, lactic acidosis; date=20060920 ||| term=orthologous to S. cerevisiae YIL125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0042645; mitochondrial nucleoid
GO:0009353; oxoglutarate dehydrogenase complex (sensu Eukaryota)
GO:0004591; oxoglutarate dehydrogenase (succinyl- transferring) activity
GO:0006103; 2-oxoglutarate metabolism
GO:0006099; tricarboxylic acid cycle" ; gene "SPBC3H7.03c" ; product "2-oxoglutarate dehydrogenase (lipoamide) (e1 component of oxoglutarate dehydrogenase complex) (predicted)" ; EC_number "1.2.4.2" ;
chromosome2 GeneDB CDS 1880739 1883768 . + . mRNA SPBC3H7.03c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1883769 1884128 . + . mRNA SPBC3H7.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.03c" ; systematic_id "SPBC3H7.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1884188 1884364 . - . mRNA SPBC3H7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3H7.02" ; systematic_id "SPBC3H7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1884365 1886998 . - . mRNA SPBC3H7.02 ; db_xref "SPD:47/47A05" ; systematic_id "SPBC3H7.02" ; colour "7" ; GO "GO:0008272; sulfate transport
GO:0005886; plasma membrane
GO:0015116; sulfate transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR294W and YLR092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC3H7.02" ; product "sulfate transporter (predicted)" ;
chromosome2 GeneDB CDS 1884365 1886998 . - . mRNA SPBC3H7.02 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1886999 1887940 . - . mRNA SPBC3H7.02 ; ID "SPBC3H7.02" ; db_xref "PMID:18488015" ; systematic_id "SPBC3H7.02" ; note "From Solexa transcript SPNG1526 ||| the coordinates of this feature are not exact" ;
chromosome2 GeneDB 3'-UTR 1889972 1890163 . - . mRNA SPBC3H7.01 ; ID "SPBC3H7.01" ; systematic_id "SPBC3H7.01" ; note "mRNA from SPST11P" ;
chromosome2 GeneDB CDS_parts 1890164 1891656 . - . mRNA SPBC3H7.01 ; systematic_id "SPBC3H7.01" ; colour "2" ; gene "spo14 ||| stl1 ||| SPBC3H7.01 ||| SPBP16F5.01c" ; Alias "spo14" ; db_xref "SPD:33/33A12" ; synonym "stl1 ||| SPBP16F5.01c" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005085; guanyl-nucleotide exchange factor activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0031321; prospore formation
GO:0031322; prospore-specific spindle pole body modification
GO:0032120; ascospore-type prospore membrane formation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:3442824; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNR026C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "spo14" ; product "GDP/GTP exchange factor, WD repeat protein Spo14" ;
chromosome2 GeneDB CDS 1890164 1890484 . - . mRNA SPBC3H7.01 ; colour "2" ;
chromosome2 GeneDB CDS 1890541 1890882 . - . mRNA SPBC3H7.01 ; colour "2" ;
chromosome2 GeneDB CDS 1890939 1891223 . - . mRNA SPBC3H7.01 ; colour "2" ;
chromosome2 GeneDB CDS 1891270 1891395 . - . mRNA SPBC3H7.01 ; colour "2" ;
chromosome2 GeneDB CDS 1891543 1891656 . - . mRNA SPBC3H7.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 1890485 1890500 . - . misc_feature unknown_1451 ; colour "6" ; note "ctaatatgcatgctag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1890485 1890540 . - . intron SPBC3H7.01 ; systematic_id "SPBC3H7.01" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 1890535 1890540 . - . misc_feature unknown_1452 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1890579 1891004 . + . misc_feature unknown_1453 ; note "nominal overlap with cosmid SPBC3H7 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 1890883 1890900 . - . misc_feature unknown_1454 ; colour "6" ; note "cttaccattcttttgtag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1890883 1890938 . - . intron SPBC3H7.01 ; systematic_id "SPBC3H7.01" ; note "confirmed by mRNA ||| confirmed intron" ;
chromosome2 GeneDB misc_feature 1890933 1890938 . - . misc_feature unknown_1455 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB intron 1891224 1891269 . - . intron SPBC3H7.01 ; systematic_id "SPBC3H7.01" ; note "confirmed intron" ;
chromosome2 GeneDB intron 1891396 1891542 . - . intron SPBC3H7.01 ; systematic_id "SPBC3H7.01" ; note "confirmed intron" ;
chromosome2 GeneDB 5'-UTR 1891657 1891753 . - . mRNA SPBC3H7.01 ; ID "SPBC3H7.01" ; systematic_id "SPBC3H7.01" ; note "mRNA from SPST11P" ;
chromosome2 GeneDB intron 1891754 1891790 . - . intron unknown_1456 ; note "confirmed intron" ;
chromosome2 GeneDB misc_RNA 1892116 1892775 . + . misc_RNA SPNCRNA.379 ; db_xref "PMID:18488015" ; synonym "SPNG1528" ; systematic_id "SPNCRNA.379" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 1893038 1893155 . + . mRNA SPBP16F5.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP16F5.02" ; systematic_id "SPBP16F5.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1893156 1894262 . + . mRNA SPBP16F5.02 ; systematic_id "SPBP16F5.02" ; colour "2" ; gene "mcs2 ||| SPBP16F5.02" ; Alias "mcs2" ; db_xref "SPD:32/32E06" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0004861; cyclin-dependent protein kinase inhibitor activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006367; transcription inititation from RNA polymerase II promoter
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:8467814; date=20100824 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YPR025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Mitotic Catastrophe Suppressor; cv=name_description; date=19700101 ||| term=human CCNH ortholog; date=20110113" ; primary_name "mcs2" ; product "TFIIH complex cyclin Mcs2" ;
chromosome2 GeneDB CDS 1893156 1893428 . + . mRNA SPBP16F5.02 ; colour "2" ;
chromosome2 GeneDB CDS 1893515 1893588 . + . mRNA SPBP16F5.02 ; colour "2" ;
chromosome2 GeneDB CDS 1893641 1894262 . + . mRNA SPBP16F5.02 ; colour "2" ;
chromosome2 GeneDB CDS_parts 1894433 1905532 . - . mRNA SPBP16F5.03c ; systematic_id "SPBP16F5.03c" ; colour "2" ; gene "SPBP16F5.03c ||| tra1" ; Alias "tra1" ; db_xref "SPD:50/50A01" ; GO "GO:0005515; protein binding
GO:0016573; histone acetylation
GO:0048017; inositol lipid-mediated signaling
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR099W; date=19700101 ||| term=TRRAP family protein; db_xref=PMID:18076567; date=20080104 ||| term=phosphoinositide 3-kinase family protein; date=20080104 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, small cells; db_xref=PMID:20194963; date=20101201" ; primary_name "tra1" ; product "SAGA complex phosphatidylinositol pseudokinase Tra1" ;
chromosome2 GeneDB CDS 1894433 1905532 . - . mRNA SPBP16F5.03c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1905730 1905798 . + . mRNA SPBP16F5.04 ; Alias "ubc7" ; ID "SPBP16F5.04" ; db_xref "EMBL:D85544" ; systematic_id "SPBP16F5.04" ; primary_name "ubc7" ;
chromosome2 GeneDB CDS_parts 1905799 1906744 . + . mRNA SPBP16F5.04 ; systematic_id "SPBP16F5.04" ; colour "2" ; Alias "ubc7" ; obsolete_name "ubc3" ; db_xref "SPD:32/32B06" ; synonym "ubcP3" ; GO "GO:0030466; chromatin silencing at silent mating- type cassette
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0000151; ubiquitin ligase complex
GO:0030433; ER-associated protein catabolic process
GO:0010620; negative regulation of transcription by transcription factor catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is Sre1; db_xref=PMID:19520858; date=20100308 ||| term=orthologous to S. cerevisiae YMR022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ubc7" ; product "ubiquitin conjugating enzyme Ubc7/UbcP3" ; EC_number "6.3.2.19" ;
chromosome2 GeneDB CDS 1905799 1905987 . + . mRNA SPBP16F5.04 ; colour "2" ;
chromosome2 GeneDB CDS 1906384 1906441 . + . mRNA SPBP16F5.04 ; colour "2" ;
chromosome2 GeneDB CDS 1906491 1906744 . + . mRNA SPBP16F5.04 ; colour "2" ;
chromosome2 GeneDB intron 1905988 1906383 . + . intron SPBP16F5.04 ; db_xref "EMBL:D85544" ; systematic_id "SPBP16F5.04" ; note "confirmed by mRNA" ;
chromosome2 GeneDB intron 1906442 1906490 . + . intron SPBP16F5.04 ; db_xref "EMBL:D85544" ; systematic_id "SPBP16F5.04" ; note "confirmed by mRNA" ;
chromosome2 GeneDB 3'-UTR 1906745 1906798 . + . mRNA SPBP16F5.04 ; Alias "ubc7" ; ID "SPBP16F5.04" ; db_xref "EMBL:D85544" ; systematic_id "SPBP16F5.04" ; primary_name "ubc7" ;
chromosome2 GeneDB 3'-UTR 1907115 1907231 . - . mRNA SPBP16F5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP16F5.05c" ; systematic_id "SPBP16F5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1907232 1907672 . - . mRNA SPBP16F5.05c ; db_xref "SPD:31/31D09" ; systematic_id "SPBP16F5.05c" ; colour "7" ; GO "GO:0030688; nucleolar preribosome, small subunit precursor
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL239W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBP16F5.05c" ; product "ribosome biogenesis protein Nop8 (predicted)" ;
chromosome2 GeneDB CDS 1907232 1907672 . - . mRNA SPBP16F5.05c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1907671 1907722 . - . mRNA SPBP16F5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP16F5.05c" ; systematic_id "SPBP16F5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1907893 1908131 . + . mRNA SPBP16F5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP16F5.06" ; systematic_id "SPBP16F5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1908132 1909568 . + . mRNA SPBP16F5.06 ; db_xref "SPD:33/33A06" ; systematic_id "SPBP16F5.06" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YOL144W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBP16F5.06" ; product "ribosome biogenesis protein Nop6 (predicted)" ;
chromosome2 GeneDB CDS 1908132 1909568 . + . mRNA SPBP16F5.06 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1909569 1909923 . + . mRNA SPBP16F5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP16F5.06" ; systematic_id "SPBP16F5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1910146 1910179 . + . mRNA SPBP16F5.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP16F5.07" ; systematic_id "SPBP16F5.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1910180 1911683 . + . mRNA SPBP16F5.07 ; systematic_id "SPBP16F5.07" ; colour "2" ; gene "apm1 ||| SPBP16F5.07" ; Alias "apm1" ; db_xref "SPD:33/33B01" ; GO "GO:0030276; clathrin binding
GO:0016197; endosome transport
GO:0030121; AP-1 adaptor complex
GO:0005794; Golgi apparatus
GO:0005768; endosome
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport
GO:0071775; regulation of cell cycle cytokinesis
GO:0060237; regulation of fungal-type cell wall organization
GO:0032889; regulation of vacuole fusion, non- autophagic" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL259C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:17287513; date=20100917 ||| term=phenotype, sensitive to FK605; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=target is Prz1; date=20090817" ; primary_name "apm1" ; product "AP-1 adaptor complex mu subunit Apm1" ;
chromosome2 GeneDB CDS 1910180 1910241 . + . mRNA SPBP16F5.07 ; colour "2" ;
chromosome2 GeneDB CDS 1910317 1910422 . + . mRNA SPBP16F5.07 ; colour "2" ;
chromosome2 GeneDB CDS 1910493 1911140 . + . mRNA SPBP16F5.07 ; colour "2" ;
chromosome2 GeneDB CDS 1911219 1911683 . + . mRNA SPBP16F5.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1911684 1911815 . + . mRNA SPBP16F5.07 ; ID "SPBP16F5.07" ; systematic_id "SPBP16F5.07" ; note "mRNA from AU014090" ;
chromosome2 GeneDB 3'-UTR 1911956 1912135 . - . mRNA SPBP16F5.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP16F5.08c" ; systematic_id "SPBP16F5.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1912136 1913479 . - . mRNA SPBP16F5.08c ; db_xref "SPD:32/32H05" ; systematic_id "SPBP16F5.08c" ; colour "7" ; GO "GO:0006457; protein folding
GO:0005789; endoplasmic reticulum membrane
GO:0004499; flavin-containing monooxygenase activity
GO:0050661; NADP binding
GO:0050660; FAD binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR176W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPBP16F5.08c" ; product "flavin dependent monooxygenase (predicted)" ;
chromosome2 GeneDB CDS 1912136 1913479 . - . mRNA SPBP16F5.08c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1913478 1913716 . - . mRNA SPBP16F5.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP16F5.08c" ; systematic_id "SPBP16F5.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1914034 1915317 . + . misc_RNA SPNCRNA.380 ; db_xref "PMID:18488015" ; synonym "SPNG1530" ; systematic_id "SPNCRNA.380" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 3'-UTR 1915375 1915849 . - . mRNA SPBC16E9.01c ; ID "SPBC16E9.01c" ; systematic_id "SPBC16E9.01c" ; note "mRNA from AU012439" ;
chromosome2 GeneDB CDS_parts 1915850 1916737 . - . mRNA SPBC16E9.01c ; systematic_id "SPBC16E9.01c" ; colour "2" ; gene "php4 ||| SPBP16F5.09c ||| SPBC16E9.01c" ; Alias "php4" ; db_xref "SPD:32/32A08" ; synonym "SPBP16F5.09c" ; GO "GO:0016602; CCAAT-binding factor complex
GO:0016564; transcriptional repressor activity
GO:0006109; regulation of carbohydrate metabolic process
GO:0090375; negative regulation of transcription from RNA polymerase II promoter in response to iron ion starvation
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=orthologous to S. cerevisiae YKL109W; db_xref=PMID:16963626; date=20070418 ||| term=gene expression, promoter contains IDP (GATA); db_xref=PMID:16963626; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally regulated by Fep1; db_xref=PMID:16963626; cv=gene_ex; date=20070516 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18223116; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=DNA binding specificity, complex binds 5'-CCAAT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates pcl1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates sdh41; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates isa1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates fbp1; db_xref=PMID:11238405; date=20100302" ; primary_name "php4" ; product "CCAAT-binding factor complex subunit Php4" ;
chromosome2 GeneDB CDS 1915850 1916737 . - . mRNA SPBC16E9.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 1916254 1916377 . + . misc_feature unknown_1457 ; note "nominal overlap with SPBC16E9 S. pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 1916736 1917400 . - . mRNA SPBC16E9.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.01c" ; systematic_id "SPBC16E9.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snoRNA 1917406 1917613 . + . snoRNA SPSNORNA.40 ; Alias "snR42" ; db_xref "EMBL:AJ632006 ||| PMID:15716270" ; systematic_id "SPSNORNA.40" ; controlled_curation "term=orthologous to S. cerevisiae snR42; date=20070104" ; gene "SPSNORNA.40" ; primary_name "snR42" ; product "small nucleolar RNA snR42" ;
chromosome2 GeneDB 3'-UTR 1918006 1918160 . - . mRNA SPBC16E9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.02c" ; systematic_id "SPBC16E9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1918161 1920173 . - . mRNA SPBC16E9.02c ; db_xref "SPD:27/27E03" ; systematic_id "SPBC16E9.02c" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0043130; ubiquitin binding
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CUE domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR042W and YDR273W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC16E9.02c" ; product "CUE domain protein" ;
chromosome2 GeneDB CDS 1918161 1919701 . - . mRNA SPBC16E9.02c ; colour "10" ;
chromosome2 GeneDB CDS 1919919 1919988 . - . mRNA SPBC16E9.02c ; colour "10" ;
chromosome2 GeneDB CDS 1920075 1920173 . - . mRNA SPBC16E9.02c ; colour "10" ;
chromosome2 GeneDB misc_feature 1919702 1919714 . - . misc_feature unknown_1458 ; colour "6" ; note "ctaaccataatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1919913 1919918 . - . misc_feature unknown_1459 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1919989 1920009 . - . misc_feature unknown_1460 ; colour "6" ; note "ctaacatatatttatctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1920069 1920074 . - . misc_feature unknown_1461 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1920172 1920373 . - . mRNA SPBC16E9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.02c" ; systematic_id "SPBC16E9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1920541 1920762 . - . mRNA SPBC16E9.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.03c" ; systematic_id "SPBC16E9.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1920763 1921512 . - . mRNA SPBC16E9.03c ; systematic_id "SPBC16E9.03c" ; colour "7" ; gene "SPBC16E9.03c" ; Alias "coa1" ; db_xref "SPD:09/09B10" ; GO "GO:0031303; integral to mitochondrial inner membrane
GO:0033617; mitochondrial respiratory chain complex IV assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL157C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20080202 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=human C7orf44 ortholog; date=20100107" ; primary_name "coa1" ; product "mitochondrial inner membrane protein involved in respiratory chain complex IV assembly Coa1 (predicted)" ;
chromosome2 GeneDB CDS 1920763 1921512 . - . mRNA SPBC16E9.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 1921511 1921745 . - . mRNA SPBC16E9.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.03c" ; systematic_id "SPBC16E9.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1921533 1921867 . + . mRNA SPBC16E9.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.19" ; systematic_id "SPBC16E9.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1921868 1922173 . + . mRNA SPBC16E9.19 ; db_xref "SPD:51/51F09" ; systematic_id "SPBC16E9.19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC16E9.19" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1921868 1922173 . + . mRNA SPBC16E9.19 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1922174 1923066 . + . mRNA SPBC16E9.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.19" ; systematic_id "SPBC16E9.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1923622 1923985 . + . mRNA SPBC16E9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.05" ; systematic_id "SPBC16E9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1923986 1925122 . + . mRNA SPBC16E9.05 ; systematic_id "SPBC16E9.05" ; colour "2" ; gene "erg6 ||| SPBC16E9.05" ; Alias "erg6" ; db_xref "SPD:17/17H08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML008C; date=19700101 ||| term=phenotype, septation defects, multiple septa; db_xref=PMID:18310029; date=20091123 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0006696; ergosterol biosynthesis
GO:0003838; sterol 24-C-methyltransferase activity
GO:0005783; endoplasmic reticulum
GO:0006623; protein targeting to vacuole
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthesis
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane" ; primary_name "erg6" ; product "sterol 24-C-methyltransferase Erg6" ; EC_number "2.1.1.41" ;
chromosome2 GeneDB CDS 1923986 1925122 . + . mRNA SPBC16E9.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1925123 1925394 . + . mRNA SPBC16E9.05 ; ID "SPBC16E9.05" ; systematic_id "SPBC16E9.05" ; note "mRNA from AU011532" ;
chromosome2 GeneDB CDS_parts 1925686 1925994 . - . mRNA SPBC16E9.06c ; systematic_id "SPBC16E9.06c" ; colour "2" ; gene "uvi31 ||| SPBC16E9.06c" ; Alias "uvi31" ; db_xref "SPD:31/31C06" ; GO "GO:0034644; cellular response to UV
GO:0034644; cellular response to UV" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression induced by UV; db_xref=PMID:9258332; cv=gene_ex; date=20050415 ||| term=phenotype, sporulation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:12521307; date=20050415 ||| term=orthologous to S. cerevisiae YAL044W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "uvi31" ; product "BolA domain UV induced protein Uvi31" ;
chromosome2 GeneDB CDS 1925686 1925994 . - . mRNA SPBC16E9.06c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1925993 1926201 . - . mRNA SPBC16E9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.06c" ; systematic_id "SPBC16E9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1926374 1927139 . + . mRNA SPBC16E9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.07" ; systematic_id "SPBC16E9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1927140 1928081 . + . mRNA SPBC16E9.07 ; systematic_id "SPBC16E9.07" ; colour "8" ; gene "SPBC16E9.07 ||| mug100" ; db_xref "SPD:13/13B12" ; Alias "mug100" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug100" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1927140 1928081 . + . mRNA SPBC16E9.07 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1928082 1928346 . + . mRNA SPBC16E9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.07" ; systematic_id "SPBC16E9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1928803 1929870 . + . mRNA SPBC16E9.08 ; systematic_id "SPBC16E9.08" ; colour "2" ; gene "mcp4 ||| SPBC16E9.08 ||| mug101" ; Alias "mcp4" ; db_xref "SPD:16/16D06" ; synonym "mug101" ; GO "GO:0005737; cytoplasm
; prospore membrane
GO:0007015; actin filament organization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, no apparent orthologs; date=20070810 ||| term=name description, Meiotically Upregulated Gene; db_xref=PMID:16303567; cv=name_description; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908" ; primary_name "mcp4" ; product "prospore membrane protein Mcp4/Mug101" ;
chromosome2 GeneDB CDS 1928803 1929870 . + . mRNA SPBC16E9.08 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1929995 1930511 . - . mRNA SPBC16E9.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.09c" ; systematic_id "SPBC16E9.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1930512 1931324 . - . mRNA SPBC16E9.09c ; db_xref "SPD:10/10D10" ; systematic_id "SPBC16E9.09c" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR110W and YGL002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC16E9.09c" ; product "COPII vesicle coat component Erp5/Erp6 (predicted)" ;
chromosome2 GeneDB CDS 1930512 1930540 . - . mRNA SPBC16E9.09c ; colour "7" ;
chromosome2 GeneDB CDS 1930582 1930773 . - . mRNA SPBC16E9.09c ; colour "7" ;
chromosome2 GeneDB CDS 1930835 1931048 . - . mRNA SPBC16E9.09c ; colour "7" ;
chromosome2 GeneDB CDS 1931112 1931324 . - . mRNA SPBC16E9.09c ; colour "7" ;
chromosome2 GeneDB misc_feature 1930541 1930553 . - . misc_feature unknown_1462 ; colour "6" ; note "ctaacttttccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1930576 1930581 . - . misc_feature unknown_1463 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1930774 1930791 . - . misc_feature unknown_1464 ; colour "6" ; note "ctaatcccttttttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1930829 1930834 . - . misc_feature unknown_1465 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1931049 1931063 . - . misc_feature unknown_1466 ; colour "6" ; note "ctaacaaatatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1931106 1931111 . - . misc_feature unknown_1467 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 1931810 1931898 . - . mRNA SPBC16E9.10c ; ID "SPBC16E9.10c" ; systematic_id "SPBC16E9.10c" ; note "mRNA from AU010538" ;
chromosome2 GeneDB CDS_parts 1931899 1934401 . - . mRNA SPBC16E9.10c ; db_xref "SPD:29/29A11" ; systematic_id "SPBC16E9.10c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0000055; ribosomal large subunit export from nucleus
GO:0016887; ATPase activity
GO:0005634; nucleus
GO:0005524; ATP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YLL034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC16E9.10c" ; product "AAA family ATPase Rix7 (predicted)" ;
chromosome2 GeneDB CDS 1931899 1933328 . - . mRNA SPBC16E9.10c ; colour "7" ;
chromosome2 GeneDB CDS 1933372 1933800 . - . mRNA SPBC16E9.10c ; colour "7" ;
chromosome2 GeneDB CDS 1933860 1934025 . - . mRNA SPBC16E9.10c ; colour "7" ;
chromosome2 GeneDB CDS 1934087 1934401 . - . mRNA SPBC16E9.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 1933329 1933344 . - . misc_feature unknown_1468 ; colour "6" ; note "ctaacagttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1933366 1933371 . - . misc_feature unknown_1469 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1933801 1933817 . - . misc_feature unknown_1470 ; colour "6" ; note "ctaacacttttttaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1933854 1933859 . - . misc_feature unknown_1471 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1934081 1934086 . - . misc_feature unknown_1472 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 1935530 1935776 . - . mRNA SPBC16E9.11c ; ID "SPBC16E9.11c" ; systematic_id "SPBC16E9.11c" ; note "mRNA from SPAB1023" ;
chromosome2 GeneDB CDS_parts 1935777 1938479 . - . mRNA SPBC16E9.11c ; systematic_id "SPBC16E9.11c" ; colour "7" ; gene "pub3 ||| SPBC16E9.11c" ; Alias "pub3" ; db_xref "SPD:39/39A04" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0006511; ubiquitin-dependent protein catabolic process
GO:0005543; phospholipid binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YER125W; date=19700101 ||| term=ubiquitin-protein ligase E3; date=20081104 ||| term=Nedd4/Rsp5 family; db_xref=PMID:11956316; date=20081001 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, liddle syndrome; date=20101102 ||| term=human NEDD4 and NEDD4L ortholog; date=20101102" ; primary_name "pub3" ; product "HECT-type ubiquitin-protein ligase Pub3 (predicted)" ;
chromosome2 GeneDB CDS 1935777 1937958 . - . mRNA SPBC16E9.11c ; colour "7" ;
chromosome2 GeneDB CDS 1938301 1938479 . - . mRNA SPBC16E9.11c ; colour "7" ;
chromosome2 GeneDB misc_feature 1937959 1937973 . - . misc_feature unknown_1473 ; colour "6" ; note "ctaactaaattctag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1937959 1938300 . - . intron SPBC16E9.11c ; systematic_id "SPBC16E9.11c" ; note "confirmed by EST" ;
chromosome2 GeneDB misc_feature 1938295 1938300 . - . misc_feature unknown_1474 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1938478 1938581 . - . mRNA SPBC16E9.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.11c" ; systematic_id "SPBC16E9.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1939401 1940093 . - . mRNA SPBC16E9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.12c" ; systematic_id "SPBC16E9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1940094 1940756 . - . mRNA SPBC16E9.12c ; systematic_id "SPBC16E9.12c" ; colour "2" ; gene "pab2 ||| SPBC16E9.12c" ; note "PMID:17213188 refers to SPBC16E6.12c in error" ; Alias "pab2" ; db_xref "SPD:07/07F06" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:17213188; date=20070813 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YIR001C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0005515; protein binding
GO:0005634; nucleus
GO:0008143; poly(A) binding
GO:0000289; poly(A) tail shortening" ; primary_name "pab2" ; product "poly(A) binding protein Pab2" ;
chromosome2 GeneDB CDS 1940094 1940216 . - . mRNA SPBC16E9.12c ; colour "2" ;
chromosome2 GeneDB CDS 1940273 1940360 . - . mRNA SPBC16E9.12c ; colour "2" ;
chromosome2 GeneDB CDS 1940416 1940669 . - . mRNA SPBC16E9.12c ; colour "2" ;
chromosome2 GeneDB CDS 1940721 1940756 . - . mRNA SPBC16E9.12c ; colour "2" ;
chromosome2 GeneDB misc_feature 1940217 1940232 . - . misc_feature unknown_1475 ; colour "6" ; note "ctaacttgaaatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1940267 1940272 . - . misc_feature unknown_1476 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1940361 1940377 . - . misc_feature unknown_1477 ; colour "6" ; note "ctaacctagtttcgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1940410 1940415 . - . misc_feature unknown_1478 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1940670 1940682 . - . misc_feature unknown_1479 ; colour "6" ; note "cttacatgattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1940715 1940720 . - . misc_feature unknown_1480 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1940755 1940776 . - . mRNA SPBC16E9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.12c" ; systematic_id "SPBC16E9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1942648 1943226 . + . mRNA SPBC16E9.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.13" ; systematic_id "SPBC16E9.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1943227 1944651 . + . mRNA SPBC16E9.13 ; systematic_id "SPBC16E9.13" ; colour "2" ; gene "ksp1 ||| ppk20 ||| SPBC16E9.13" ; Alias "ksp1" ; db_xref "SPD:21/21H09" ; synonym "ppk20" ; GO "GO:0005634; nucleus
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YHR082C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ksp1" ; product "serine/threonine protein kinase Ksp1 (predicted)" ;
chromosome2 GeneDB CDS 1943227 1944651 . + . mRNA SPBC16E9.13 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 1944652 1944908 . + . mRNA SPBC16E9.13 ; ID "SPBC16E9.13" ; systematic_id "SPBC16E9.13" ; note "mRNA from AU013381" ;
chromosome2 GeneDB 3'-UTR 1944937 1945161 . - . mRNA SPBC16E9.14c ; ID "SPBC16E9.14c" ; systematic_id "SPBC16E9.14c" ; note "mRNA from AU009502" ;
chromosome2 GeneDB CDS_parts 1945162 1946322 . - . mRNA SPBC16E9.14c ; systematic_id "SPBC16E9.14c" ; colour "2" ; gene "SPBC16E9.14c ||| zrg17" ; Alias "zrg17" ; db_xref "SPD:18/18C12" ; GO "GO:0000139; Golgi membrane
GO:0006829; zinc ion transport
GO:0005385; zinc ion transmembrane transporter activity
GO:0006882; cellular zinc ion homeostasis
GO:0005515; protein binding
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNR039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "zrg17" ; product "cation diffusion family zinc membrane transporter Zrg17" ;
chromosome2 GeneDB CDS 1945162 1946322 . - . mRNA SPBC16E9.14c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1946321 1946392 . - . mRNA SPBC16E9.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.14c" ; systematic_id "SPBC16E9.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1946887 1946977 . + . mRNA SPBC16E9.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.15" ; systematic_id "SPBC16E9.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1946978 1947375 . + . mRNA SPBC16E9.15 ; db_xref "SPD:03/03A05" ; systematic_id "SPBC16E9.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPBC16E9.15" ; product "heat shock factor binding protein (predicted)" ;
chromosome2 GeneDB CDS 1946978 1947040 . + . mRNA SPBC16E9.15 ; colour "7" ;
chromosome2 GeneDB CDS 1947098 1947121 . + . mRNA SPBC16E9.15 ; colour "7" ;
chromosome2 GeneDB CDS 1947171 1947213 . + . mRNA SPBC16E9.15 ; colour "7" ;
chromosome2 GeneDB CDS 1947278 1947375 . + . mRNA SPBC16E9.15 ; colour "7" ;
chromosome2 GeneDB misc_feature 1947041 1947046 . + . misc_feature unknown_1481 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1947078 1947097 . + . misc_feature unknown_1482 ; colour "6" ; note "ctaaccttgtttacttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1947122 1947127 . + . misc_feature unknown_1483 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1947154 1947170 . + . misc_feature unknown_1484 ; colour "6" ; note "ctaacagatttttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1947214 1947219 . + . misc_feature unknown_1485 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1947252 1947277 . + . misc_feature unknown_1486 ; colour "6" ; note "ctaatcataactttttatgttaacag, splice branch and accept or" ;
chromosome2 GeneDB 3'-UTR 1947376 1947818 . + . mRNA SPBC16E9.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.15" ; systematic_id "SPBC16E9.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1947985 1950255 . - . mRNA SPBC16E9.16c ; systematic_id "SPBC16E9.16c" ; colour "2" ; gene "lsd90 ||| SPBC16E9.16c" ; Alias "lsd90" ; db_xref "SPD:52/52C11" ; GO "GO:0042759; long-chain fatty acid biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Large and Small Daughter nuclei; cv=phenotype; db_xref=PMID:18079165; date=20080103 ||| term=species distribution, no apparent orthologs; date=20080103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:18079165; date=20090505" ; primary_name "lsd90" ; product "Lsd90 protein" ;
chromosome2 GeneDB CDS 1947985 1948953 . - . mRNA SPBC16E9.16c ; colour "2" ;
chromosome2 GeneDB CDS 1948955 1950050 . - . mRNA SPBC16E9.16c ; colour "2" ;
chromosome2 GeneDB CDS 1950053 1950255 . - . mRNA SPBC16E9.16c ; colour "2" ;
chromosome2 GeneDB misc_feature 1950256 1953418 . - . misc_feature unknown_1487 ; note "gene free region, with strand specific compositional bias, main strand is ag rich, complementary strand ct rich" ;
chromosome2 GeneDB misc_RNA 1953038 1954662 . + . misc_RNA SPNCRNA.571 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.571" ; synonym "SPNG2AF49" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB CDS_parts 1953419 1954712 . - . mRNA SPBC16E9.17c ; systematic_id "SPBC16E9.17c" ; colour "2" ; gene "rem1 ||| SPBC16E9.17c" ; Alias "rem1" ; db_xref "SPD:32/32G07" ; GO "GO:0051445; regulation of progression through meiotic cell cycle
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0006279; premeiotic DNA synthesis
GO:0007131; meiotic recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=B-type cyclin; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:16024772; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "rem1" ; product "meiosis-specific cyclin Rem1" ;
chromosome2 GeneDB CDS 1953419 1954165 . - . mRNA SPBC16E9.17c ; colour "2" ;
chromosome2 GeneDB CDS 1954251 1954712 . - . mRNA SPBC16E9.17c ; colour "2" ;
chromosome2 GeneDB misc_feature 1954166 1954179 . - . misc_feature unknown_1488 ; colour "6" ; note "ttaacattttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1954245 1954250 . - . misc_feature unknown_1489 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1955627 1955708 . + . mRNA SPBC16E9.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.18" ; systematic_id "SPBC16E9.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1955709 1957022 . + . mRNA SPBC16E9.18 ; literature "PMID:19286980" ; systematic_id "SPBC16E9.18" ; colour "2" ; Alias "psd1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00561; ||| SPD:22/22H06" ; synonym "SPBC1E8.01" ; GO "GO:0006656; phosphatidylcholine biosynthesis
GO:0004609; phosphatidylserine decarboxylase activity
GO:0005743; mitochondrial inner membrane
GO:0006646; phosphatidylethanolamine biosynthetic process
GO:0071775; regulation of cell cycle cytokinesis
GO:0008360; regulation of cell shape" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19286980; date=20090727 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=phenotype, cell morphology, misshapen cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=phenotype, growth auxotrophic for ethanolamine; cv=phenotype; db_xref=PMID:198286980; qualifier=deletion; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=orthologous to S. cerevisiae YNL169C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "psd1" ; product "phosphatidylserine decarboxylase Psd1" ; EC_number "4.1.1.65" ;
chromosome2 GeneDB CDS 1955709 1957022 . + . mRNA SPBC16E9.18 ; colour "2" ;
chromosome2 GeneDB misc_feature 1955935 1956318 . + . misc_feature unknown_1490 ; note "nominal overlap with cosmid SPBC16E9 and cosmid SPBC1E8" ;
chromosome2 GeneDB 3'-UTR 1957023 1957276 . + . mRNA SPBC16E9.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16E9.18" ; systematic_id "SPBC16E9.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snoRNA 1957286 1957449 . - . snoRNA SPSNORNA.39 ; Alias "snR36" ; db_xref "EMBL:AJ632005 ||| PMID:15716270" ; systematic_id "SPSNORNA.39" ; controlled_curation "term=orthologous to S. cerevisiae snR36; date=20070104" ; gene "SPSNORNA.39" ; primary_name "snR36" ; product "small nucleolar RNA snR36" ;
chromosome2 GeneDB 5'-UTR 1958105 1958124 . + . mRNA SPBC1E8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1E8.02" ; systematic_id "SPBC1E8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1958125 1959936 . + . mRNA SPBC1E8.02 ; db_xref "SPD:36/36F02" ; systematic_id "SPBC1E8.02" ; colour "7" ; GO "GO:0032446; protein modification by small protein conjugation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1E8.02" ; product "ubiquitin family protein (predicted)" ;
chromosome2 GeneDB CDS 1958125 1959936 . + . mRNA SPBC1E8.02 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1959937 1959976 . + . mRNA SPBC1E8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1E8.02" ; systematic_id "SPBC1E8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1960030 1960383 . - . mRNA SPBC1E8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1E8.03c" ; systematic_id "SPBC1E8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1960384 1961817 . - . mRNA SPBC1E8.03c ; db_xref "SPD:23/23B07" ; systematic_id "SPBC1E8.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC1E8.03c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1960384 1961817 . - . mRNA SPBC1E8.03c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 1961816 1962397 . - . mRNA SPBC1E8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1E8.03c" ; systematic_id "SPBC1E8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1963882 1964560 . + . misc_RNA SPNCRNA.382 ; db_xref "PMID:18488015" ; synonym "SPNG1546-47" ; systematic_id "SPNCRNA.382" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB LTR 1964875 1965223 . + . LTR unknown_1491 ; colour "4" ; note "tf2 type LTR" ;
chromosome2 GeneDB misc_feature 1964875 1969789 . + . misc_feature unknown_1492 ; note "LTRs-retrotransposon" ;
chromosome2 GeneDB CDS_parts 1965390 1969387 . + . mRNA SPBC1E8.04 ; systematic_id "SPBC1E8.04" ; colour "13" ; gene "Tf2-10-pseudo ||| SPBC1E8.04" ; note "frameshifted LTR retrotransposon polyprotein" ; Alias "Tf2-10-pseudo" ; obsolete_name "Tf-pseudoII" ; pseudo "_no_value" ; synonym "SPBC1E8.04c" ; controlled_curation "term=tf2-type transposon; date=19700101 ||| term=warning, frameshifted; cv=warning; date=19700101" ; primary_name "Tf2-10-pseudo" ; product "retrotransposable element: pseudo" ;
chromosome2 GeneDB CDS 1965390 1969387 . + . mRNA SPBC1E8.04 ; colour "13" ;
chromosome2 GeneDB LTR 1969441 1969789 . + . LTR unknown_1493 ; colour "4" ; note "tf2 type LTR" ;
chromosome2 GeneDB misc_RNA 1969856 1970296 . + . misc_RNA SPNCRNA.383 ; db_xref "PMID:18488015" ; synonym "SPNG1549" ; systematic_id "SPNCRNA.383" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 1970648 1970913 . + . mRNA SPBC1E8.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1E8.05" ; systematic_id "SPBC1E8.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1970914 1971867 . + . mRNA SPBC1E8.05 ; db_xref "SPD:13/13D11" ; systematic_id "SPBC1E8.05" ; colour "10" ; GO "GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=; date=20061206 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20061206 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; gene "SPBC1E8.05" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 1970914 1971867 . + . mRNA SPBC1E8.05 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 1971868 1972903 . + . mRNA SPBC1E8.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1E8.05" ; systematic_id "SPBC1E8.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 1972127 1975152 . + . misc_feature unknown_1494 ; note "nominal overlap with cosmid SPBC1E8 and cosmid SPAC1A45P" ;
chromosome2 GeneDB CDS_parts 1973367 1974065 . + . mRNA SPBC1A4.01 ; systematic_id "SPBC1A4.01" ; colour "2" ; gene "apc10 ||| SPBC1E8.06 ||| SPBC1A4.01" ; Alias "apc10" ; db_xref "SPD:40/40A07" ; synonym "SPBC1E8.06" ; GO "GO:0008054; cyclin catabolism
GO:0005680; anaphase-promoting complex
GO:0007092; anaphase-promoting complex activation during mitotic cell cycle
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9736616; date=19700101 ||| term=orthologous to S. cerevisiae YGL240W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:9736616; date=20100708" ; primary_name "apc10" ; product "anaphase-promoting complex subunit Apc10" ;
chromosome2 GeneDB CDS 1973367 1973533 . + . mRNA SPBC1A4.01 ; colour "2" ;
chromosome2 GeneDB CDS 1973605 1973931 . + . mRNA SPBC1A4.01 ; colour "2" ;
chromosome2 GeneDB CDS 1973990 1974065 . + . mRNA SPBC1A4.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 1973534 1973539 . + . misc_feature unknown_1495 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1973578 1973604 . + . misc_feature unknown_1496 ; colour "6" ; note "ctaactataattttctttgtctttaag, splice branch and accep tor" ;
chromosome2 GeneDB misc_feature 1973932 1973937 . + . misc_feature unknown_1497 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1973975 1973989 . + . misc_feature unknown_1498 ; colour "6" ; note "ctaacactgatgcag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 1974488 1975603 . - . mRNA SPBC1A4.02c ; systematic_id "SPBC1A4.02c" ; colour "2" ; gene "leu1 ||| SPBC1A4.02c ||| SPBC1E8.07c" ; Alias "leu1" ; db_xref "SPD:40/40C11" ; synonym "SPBC1E8.07c" ; GO "GO:0003862; 3-isopropylmalate dehydrogenase activity
GO:0009098; leucine biosynthesis
GO:0005829; cytosol" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "leu1" ; product "3-isopropylmalate dehydrogenase Leu1" ; EC_number "1.1.1.85" ;
chromosome2 GeneDB CDS 1974488 1975603 . - . mRNA SPBC1A4.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 1975602 1975645 . - . mRNA SPBC1A4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.02c" ; systematic_id "SPBC1A4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1976161 1976252 . - . mRNA SPBC1A4.03c ; ID "SPBC1A4.03c" ; systematic_id "SPBC1A4.03c" ; note "mRNA from AU011723" ;
chromosome2 GeneDB CDS_parts 1976253 1980766 . - . mRNA SPBC1A4.03c ; systematic_id "SPBC1A4.03c" ; colour "2" ; gene "top2 ||| ptr11 ||| SPBC1A4.03c" ; Alias "top2" ; db_xref "SPD:34/34B05" ; synonym "ptr11" ; GO "GO:0000228; nuclear chromosome
GO:0005524; ATP binding
GO:0003918; DNA topoisomerase (ATP-hydrolyzing) activity
GO:0003918; DNA topoisomerase (ATP-hydrolyzing) activity
GO:0003918; DNA topoisomerase (ATP-hydrolyzing) activity
GO:0006265; DNA topological change
GO:0006265; DNA topological change
GO:0006265; DNA topological change
GO:0006325; establishment and/or maintenance of chromatin architecture
GO:0006406; mRNA export from nucleus
GO:0007076; mitotic chromosome condensation
GO:0000712; resolution of meiotic joint molecules as recombinants
GO:0042790; transcription of nuclear rRNA large RNA polymerase I transcript
GO:0006271; DNA strand elongation during DNA replication" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15957215; date=20061012 ||| term=phenotype, cut; db_xref=PMID:8395535; date=20100705 ||| term=orthologous to S. cerevisiae YNL088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=complementation, functionally complements S. cerevisiae TOP2; db_xref=PMID:3023070; date=20101012" ; primary_name "top2" ; product "DNA topoisomerase II" ; EC_number "5.99.1.3" ;
chromosome2 GeneDB CDS 1976253 1980626 . - . mRNA SPBC1A4.03c ; colour "2" ;
chromosome2 GeneDB CDS 1980683 1980766 . - . mRNA SPBC1A4.03c ; colour "2" ;
chromosome2 GeneDB misc_feature 1980627 1980642 . - . misc_feature unknown_1499 ; colour "6" ; note "ctaacaacaacttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1980677 1980682 . - . misc_feature unknown_1500 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1980765 1981255 . - . mRNA SPBC1A4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.03c" ; systematic_id "SPBC1A4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 1981439 1982213 . + . misc_RNA SPNCRNA.384 ; db_xref "PMID:18488015" ; synonym "SPNG1551" ; systematic_id "SPNCRNA.384" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 1982635 1983272 . + . mRNA SPBC1A4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.04" ; systematic_id "SPBC1A4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1983273 1984022 . + . mRNA SPBC1A4.04 ; db_xref "SPD:09/09B11" ; systematic_id "SPBC1A4.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC1A4.04" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1983273 1984022 . + . mRNA SPBC1A4.04 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 1984023 1984283 . + . mRNA SPBC1A4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.04" ; systematic_id "SPBC1A4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1984445 1984515 . + . mRNA SPBC1A4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.05" ; systematic_id "SPBC1A4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1984516 1986671 . + . mRNA SPBC1A4.05 ; systematic_id "SPBC1A4.05" ; colour "2" ; db_xref "SPD:37/37F05" ; Alias "blt1" ; GO "GO:0071341; medial cortical node
GO:0010971; positive regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19474789; date=20090826 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, characterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, BeLT; db_xref=PMID:19474789; cv=name_description; date=20090826 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=localization dependent on Cdr1; db_xref=PMID:19474789; date=20090826 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "blt1" ; product "Blt1" ;
chromosome2 GeneDB CDS 1984516 1984562 . + . mRNA SPBC1A4.05 ; colour "2" ;
chromosome2 GeneDB CDS 1984616 1986671 . + . mRNA SPBC1A4.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 1984563 1984568 . + . misc_feature unknown_1501 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1984599 1984615 . + . misc_feature unknown_1502 ; colour "6" ; note "ctaacggtaattaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 1986672 1986701 . + . mRNA SPBC1A4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.05" ; systematic_id "SPBC1A4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1987033 1987043 . - . mRNA SPBC1A4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.06c" ; systematic_id "SPBC1A4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1987044 1988353 . - . mRNA SPBC1A4.06c ; systematic_id "SPBC1A4.06c" ; colour "7" ; gene "SPBC1A4.06c" ; Alias "tam41" ; db_xref "SPD:44/44B06" ; GO "GO:0005739; mitochondrion
GO:0030150; protein import into mitochondrial matrix
GO:0031314; extrinsic to mitochondrial inner membrane
GO:0005759; mitochondrial matrix
GO:0032049; cardiolipin biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR046W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090202 ||| term=warning, frameshifted; db_xref=PMID:16823372; cv=warning; date=20090202" ; primary_name "tam41" ; product "mitochondrial matrix protein import protein Tam41 (predicted)" ; reserved_name "tam41" ;
chromosome2 GeneDB CDS 1987044 1987099 . - . mRNA SPBC1A4.06c ; colour "7" ;
chromosome2 GeneDB CDS 1987102 1987675 . - . mRNA SPBC1A4.06c ; colour "7" ;
chromosome2 GeneDB CDS 1987737 1988015 . - . mRNA SPBC1A4.06c ; colour "7" ;
chromosome2 GeneDB CDS 1988081 1988353 . - . mRNA SPBC1A4.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 1987676 1987697 . - . misc_feature unknown_1503 ; colour "6" ; note "ttaaccgaatttgaacaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1987731 1987736 . - . misc_feature unknown_1504 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1988016 1988035 . - . misc_feature unknown_1505 ; colour "6" ; note "ctaacttatgtctctgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1988075 1988080 . - . misc_feature unknown_1506 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1988352 1988408 . - . mRNA SPBC1A4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.06c" ; systematic_id "SPBC1A4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1988570 1988985 . - . mRNA SPBC1A4.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.07c" ; systematic_id "SPBC1A4.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1988986 1990352 . - . mRNA SPBC1A4.07c ; db_xref "SPD:21/21B08" ; systematic_id "SPBC1A4.07c" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0030515; snoRNA binding
GO:0030532; small nuclear ribonucleoprotein complex
GO:0005732; small nucleolar ribonucleoprotein complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1A4.07c" ; product "U3 snoRNP-associated protein Sof1 (predicted)" ;
chromosome2 GeneDB CDS 1988986 1990034 . - . mRNA SPBC1A4.07c ; colour "7" ;
chromosome2 GeneDB CDS 1990091 1990352 . - . mRNA SPBC1A4.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 1990035 1990050 . - . misc_feature unknown_1507 ; colour "6" ; note "ctaacacattttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1990085 1990090 . - . misc_feature unknown_1508 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 1990613 1990768 . - . mRNA SPBC1A4.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.08c" ; systematic_id "SPBC1A4.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1990769 1992463 . - . mRNA SPBC1A4.08c ; systematic_id "SPBC1A4.08c" ; colour "2" ; gene "cct3 ||| SPBC1A4.08c" ; Alias "cct3" ; db_xref "SPD:35/35D01" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cct3" ; product "chaperonin-containing T-complex gamma subunit Cct3" ;
chromosome2 GeneDB CDS 1990769 1992256 . - . mRNA SPBC1A4.08c ; colour "2" ;
chromosome2 GeneDB CDS 1992327 1992400 . - . mRNA SPBC1A4.08c ; colour "2" ;
chromosome2 GeneDB CDS 1992439 1992463 . - . mRNA SPBC1A4.08c ; colour "2" ;
chromosome2 GeneDB misc_feature 1992257 1992268 . - . misc_feature unknown_1509 ; colour "6" ; note "ctgacattatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 1992257 1992326 . - . intron SPBC1A4.08c ; systematic_id "SPBC1A4.08c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 1992321 1992326 . - . misc_feature unknown_1510 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 1992401 1992414 . - . misc_feature unknown_1511 ; colour "6" ; note "ttaattaaccaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 1992433 1992438 . - . misc_feature unknown_1512 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 1992462 1992475 . - . mRNA SPBC1A4.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.08c" ; systematic_id "SPBC1A4.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1992973 1993275 . - . mRNA SPBC1A4.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.11c" ; systematic_id "SPBC1A4.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1993276 1993650 . - . mRNA SPBC1A4.11c ; obsolete_name "SPBC1A4.09c" ; db_xref "SPD:02/02F10" ; systematic_id "SPBC1A4.11c" ; colour "8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC1A4.11c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 1993276 1993650 . - . mRNA SPBC1A4.11c ; colour "8" ;
chromosome2 GeneDB CDS_parts 1993927 1995969 . + . mRNA SPBC1A4.09 ; db_xref "SPD:27/27F03" ; systematic_id "SPBC1A4.09" ; colour "7" ; GO "GO:0005634; nucleus
GO:0009982; pseudouridine synthase activity
GO:0031119; tRNA pseudouridine synthesis
GO:0031120; snRNA pseudouridine synthesis
GO:0000455; enzyme-directed rRNA pseudouridine synthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR243C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1A4.09" ; product "pseudouridine synthase (predicted)" ;
chromosome2 GeneDB CDS 1993927 1995969 . + . mRNA SPBC1A4.09 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 1995970 1995997 . + . mRNA SPBC1A4.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.09" ; systematic_id "SPBC1A4.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 1996053 1996288 . - . mRNA SPBC1A4.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.10c" ; systematic_id "SPBC1A4.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1996289 1998928 . - . mRNA SPBC1A4.10c ; systematic_id "SPBC1A4.10c" ; colour "2" ; gene "pmc1 ||| SPBC1A4.10c ||| SPBP23A10.01c ||| med14" ; Alias "pmc1" ; db_xref "SPD:33/33H06" ; synonym "SPBP23A10.01c ||| med14" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR071C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene name conflict; date=20091118" ; primary_name "pmc1" ; product "mediator complex subunit Pmc1" ;
chromosome2 GeneDB CDS 1996289 1998928 . - . mRNA SPBC1A4.10c ; colour "2" ;
chromosome2 GeneDB misc_feature 1997710 1998310 . + . misc_feature unknown_1513 ; note "nominal overlap with cosmid SPBC1A45P and P1 clone p23A10" ;
chromosome2 GeneDB 5'-UTR 1998927 1999077 . - . mRNA SPBC1A4.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1A4.10c" ; systematic_id "SPBC1A4.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 1999846 1999897 . + . mRNA SPBP23A10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.02" ; systematic_id "SPBP23A10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 1999898 2000376 . + . mRNA SPBP23A10.02 ; systematic_id "SPBP23A10.02" ; colour "7" ; gene "pkr1 ||| SPBP23A10.02" ; Alias "pkr1" ; db_xref "SPD:04/04D09" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0070072; vacuolar proton-transporting V-type ATPase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR123W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "pkr1" ; product "V-ATPase assembly factor Pkr1 (predicted)" ;
chromosome2 GeneDB CDS 1999898 2000085 . + . mRNA SPBP23A10.02 ; colour "7" ;
chromosome2 GeneDB CDS 2000166 2000376 . + . mRNA SPBP23A10.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 2000086 2000091 . + . misc_feature unknown_1514 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB intron 2000086 2000165 . + . intron SPBP23A10.02 ; systematic_id "SPBP23A10.02" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2000151 2000165 . + . misc_feature unknown_1515 ; colour "6" ; note "ttaacaactttatag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2000312 2000774 . - . mRNA SPBP23A10.03c ; db_xref "SPD:04/04B12" ; systematic_id "SPBP23A10.03c" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0006111; regulation of gluconeogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR511W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=ACN9 family; date=20100820" ; gene "SPBP23A10.03c" ; product "mitochondrial ACN9 family protein (predicted)" ;
chromosome2 GeneDB CDS 2000312 2000359 . - . mRNA SPBP23A10.03c ; colour "7" ;
chromosome2 GeneDB CDS 2000475 2000774 . - . mRNA SPBP23A10.03c ; colour "7" ;
chromosome2 GeneDB misc_feature 2000360 2000376 . - . misc_feature unknown_1516 ; colour "6" ; note "ctaactattattggcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2000377 2000453 . + . mRNA SPBP23A10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.02" ; systematic_id "SPBP23A10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2000469 2000474 . - . misc_feature unknown_1517 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2001057 2001134 . + . mRNA SPBP23A10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.04" ; systematic_id "SPBP23A10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2001135 2003269 . + . mRNA SPBP23A10.04 ; systematic_id "SPBP23A10.04" ; colour "2" ; gene "apc2 ||| SPBP23A10.04" ; note "04.02.2003 coordinates updated additional in-frame splice @ 5325,5371 (pers. comm. Hyun-Joo Yoon Vanderbilt.edu)" ; Alias "apc2" ; db_xref "SPD:37/37E02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR127C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008054; cyclin catabolism
GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0005515; protein binding" ; primary_name "apc2" ; product "anaphase-promoting complex cullin family subunit Apc2" ;
chromosome2 GeneDB CDS 2001135 2002370 . + . mRNA SPBP23A10.04 ; colour "2" ;
chromosome2 GeneDB CDS 2002415 2003034 . + . mRNA SPBP23A10.04 ; colour "2" ;
chromosome2 GeneDB CDS 2003080 2003269 . + . mRNA SPBP23A10.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 2002371 2002376 . + . misc_feature unknown_1518 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB intron 2002371 2002414 . + . intron SPBP23A10.04 ; systematic_id "SPBP23A10.04" ; note "confirmed (pers. comm. Hyun-Joo Yoon Vanderbilt.edu)" ;
chromosome2 GeneDB misc_feature 2002401 2002414 . + . misc_feature unknown_1519 ; colour "6" ; note "ctaacgttttttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2003035 2003079 . + . intron SPBP23A10.04 ; systematic_id "SPBP23A10.04" ; note "confirmed (pers. comm. Hyun-Joo Yoon Vanderbilt.edu)" ;
chromosome2 GeneDB 3'-UTR 2003270 2003475 . + . mRNA SPBP23A10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.04" ; systematic_id "SPBP23A10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2003697 2003715 . + . mRNA SPBP23A10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.05" ; systematic_id "SPBP23A10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2003716 2005099 . + . mRNA SPBP23A10.05 ; systematic_id "SPBP23A10.05" ; colour "2" ; gene "ssr4 ||| SPBP23A10.05" ; Alias "ssr4" ; db_xref "SPD:21/21D09" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016514; SWI/SNF complex
GO:0016586; RSC complex
GO:0010551; regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Swi/Snf RSC; cv=name_description; date=20061009 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "ssr4" ; product "SWI/SNF and RSC complex subunit Ssr4" ;
chromosome2 GeneDB CDS 2003716 2003874 . + . mRNA SPBP23A10.05 ; colour "2" ;
chromosome2 GeneDB CDS 2003922 2004065 . + . mRNA SPBP23A10.05 ; colour "2" ;
chromosome2 GeneDB CDS 2004215 2005099 . + . mRNA SPBP23A10.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 2003875 2003880 . + . misc_feature unknown_1520 ; colour "6" ; note "gtagtt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2003908 2003921 . + . misc_feature unknown_1521 ; colour "6" ; note "ctaacaaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2004066 2004071 . + . misc_feature unknown_1522 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2004198 2004214 . + . misc_feature unknown_1523 ; colour "6" ; note "ctaatacaatacgatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2005100 2005296 . + . mRNA SPBP23A10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.05" ; systematic_id "SPBP23A10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2005290 2005716 . - . misc_RNA SPNCRNA.60 ; Alias "prl60" ; db_xref "EMBL:AB084872 ||| PMID:12597277" ; systematic_id "SPNCRNA.60" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl60" ; gene "prl60 ||| SPNCRNA.60" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB 5'-UTR 2005957 2005967 . + . mRNA SPBP23A10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.06" ; systematic_id "SPBP23A10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2005968 2006975 . + . mRNA SPBP23A10.06 ; db_xref "SPD:14/14H07" ; systematic_id "SPBP23A10.06" ; colour "7" ; GO "GO:0016530; metallochaperone activity
GO:0071421; manganese ion transmembrane transport
GO:0005743; mitochondrial inner membrane
GO:0005384; manganese ion transporter activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YGR257C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBP23A10.06" ; product "mitochondrial manganese ion transporter (predicted)" ;
chromosome2 GeneDB CDS 2005968 2006975 . + . mRNA SPBP23A10.06 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2006976 2007160 . + . mRNA SPBP23A10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.06" ; systematic_id "SPBP23A10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2008119 2011643 . + . mRNA SPBP23A10.07 ; systematic_id "SPBP23A10.07" ; colour "2" ; gene "rpa2 ||| SPBP23A10.07" ; Alias "rpa2" ; db_xref "SPD:48/48E06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR010C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090330" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0006360; transcription from RNA polymerase I promoter
GO:0005736; DNA-directed RNA polymerase I complex" ; primary_name "rpa2" ; product "DNA-directed RNA polymerase I complex subunit Rpa2" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB CDS 2008119 2011643 . + . mRNA SPBP23A10.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2011644 2011896 . + . mRNA SPBP23A10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.07" ; systematic_id "SPBP23A10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 2012305 2012648 . - . LTR unknown_1524 ; note "Tf2-type LTR" ;
chromosome2 GeneDB 5'-UTR 2013049 2013061 . + . mRNA SPBP23A10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.08" ; systematic_id "SPBP23A10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2013062 2014363 . + . mRNA SPBP23A10.08 ; systematic_id "SPBP23A10.08" ; colour "2" ; gene "alp5 ||| SPBP23A10.08" ; Alias "alp5" ; db_xref "SPD:22/22F05" ; synonym "arp4" ; GO "GO:0043189; H4/H2A histone acetyltransferase complex
GO:0031011; Ino80 complex
GO:0035267; NuA4 histone acetyltransferase complex
GO:0000812; Swr1 complex
GO:0005634; nucleus
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0030702; chromatin silencing at centromere
GO:0016573; histone acetylation
GO:0000278; mitotic cell cycle
GO:0000070; mitotic sister chromatid segregation
GO:0031134; sister chromatid biorientation
GO:0043486; histone exchange
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, spindle checkpoint, required; db_xref=PMID:15483052; cv=phenotype; date=20060106 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15483052; date=19700101 ||| term=orthologous to S. cerevisiae YJL081C; date=19700101 ||| term=human BAF53 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230" ; primary_name "alp5" ; product "actin-like protein Arp4" ;
chromosome2 GeneDB CDS 2013062 2014363 . + . mRNA SPBP23A10.08 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2014364 2014870 . + . mRNA SPBP23A10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.08" ; systematic_id "SPBP23A10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2015416 2015499 . + . mRNA SPBP23A10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.09" ; systematic_id "SPBP23A10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2015500 2016108 . + . mRNA SPBP23A10.09 ; systematic_id "SPBP23A10.09" ; colour "2" ; gene "SPBP23A10.09" ; Alias "psf1" ; db_xref "SPD:06/06G12" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0000811; GINS complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0006271; DNA strand elongation during DNA replication
GO:0071169; establishment of protein localization to chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=20091209 ||| term=phenotype, growth defect; cv=phenotype; db_xref=PMID:19109429; qualifier=conditional; date=20091118 ||| term=phenotype, cell morphology, elongated cells; qualifier=conditional; db_xref=PMID:19109429; date=20100727 ||| term=orthologous to S. cerevisiae YDR013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "psf1" ; product "GINS complex subunit Psf1" ;
chromosome2 GeneDB CDS 2015500 2016108 . + . mRNA SPBP23A10.09 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2016109 2016296 . + . mRNA SPBP23A10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.09" ; systematic_id "SPBP23A10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2016395 2018794 . + . mRNA SPBP23A10.10 ; systematic_id "SPBP23A10.10" ; colour "2" ; gene "ppk32 ||| SPBP23A10.10" ; Alias "ppk32" ; db_xref "SPD:28/28F03" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YGL083W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ppk32" ; product "serine/threonine protein kinase Ppk32 (predicted)" ;
chromosome2 GeneDB CDS 2016395 2016419 . + . mRNA SPBP23A10.10 ; colour "2" ;
chromosome2 GeneDB CDS 2016570 2018794 . + . mRNA SPBP23A10.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 2016420 2016425 . + . misc_feature unknown_1525 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2016552 2016569 . + . misc_feature unknown_1526 ; colour "6" ; note "ctaacgttgaatgtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2018795 2018936 . + . mRNA SPBP23A10.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.10" ; systematic_id "SPBP23A10.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2018989 2019165 . - . mRNA SPBP23A10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.11c" ; systematic_id "SPBP23A10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2019166 2020689 . - . mRNA SPBP23A10.11c ; db_xref "SPD:24/24G03" ; systematic_id "SPBP23A10.11c" ; colour "7" ; GO "GO:0009277; fungal type cell wall
GO:0003843; 1,3-beta-glucan synthase activity
GO:0034411; cell wall 1,3-beta-glucan biosynthetic process" ; controlled_curation "term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR162C and YJL171C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; gene "SPBP23A10.11c" ; product "circularly permuted 1,3-beta-glucanase (predicted)" ;
chromosome2 GeneDB CDS 2019166 2020689 . - . mRNA SPBP23A10.11c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2020688 2021578 . - . mRNA SPBP23A10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.11c" ; systematic_id "SPBP23A10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2022111 2022686 . + . misc_RNA SPNCRNA.385 ; db_xref "PMID:18488015" ; synonym "SPNG1552" ; systematic_id "SPNCRNA.385" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| longest ORF with methionine is 36 amino acids" ;
chromosome2 GeneDB 5'-UTR 2023331 2023948 . + . mRNA SPBP23A10.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.12" ; systematic_id "SPBP23A10.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2023949 2024889 . + . mRNA SPBP23A10.12 ; systematic_id "SPBP23A10.12" ; colour "7" ; gene "SPBP23A10.12" ; Alias "frg1" ; db_xref "SPD:13/13B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human FRG1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, muscular dystrophy; date=20091018" ; GO "GO:0006397; mRNA processing" ; primary_name "frg1" ; product "FRG1 family protein, involved in mRNA processing (predicted)" ;
chromosome2 GeneDB CDS 2023949 2023986 . + . mRNA SPBP23A10.12 ; colour "7" ;
chromosome2 GeneDB CDS 2024059 2024178 . + . mRNA SPBP23A10.12 ; colour "7" ;
chromosome2 GeneDB CDS 2024239 2024697 . + . mRNA SPBP23A10.12 ; colour "7" ;
chromosome2 GeneDB CDS 2024769 2024889 . + . mRNA SPBP23A10.12 ; colour "7" ;
chromosome2 GeneDB misc_feature 2023987 2023992 . + . misc_feature unknown_1527 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2024044 2024058 . + . misc_feature unknown_1528 ; colour "6" ; note "ctaacaagaaatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2024179 2024184 . + . misc_feature unknown_1529 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2024214 2024238 . + . misc_feature unknown_1530 ; colour "6" ; note "ctaatttacttacaactttatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2024698 2024703 . + . misc_feature unknown_1531 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2024749 2024768 . + . misc_feature unknown_1532 ; colour "6" ; note "ctaactttgtaattttacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2024890 2025091 . + . mRNA SPBP23A10.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.12" ; systematic_id "SPBP23A10.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2025365 2025542 . + . mRNA SPBP23A10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.13" ; systematic_id "SPBP23A10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2025543 2028461 . + . mRNA SPBP23A10.13 ; systematic_id "SPBP23A10.13" ; colour "2" ; gene "orc4 ||| orp4 ||| SPBP23A10.13" ; Alias "orc4" ; db_xref "SPD:34/34A02" ; synonym "orp4" ; GO "GO:0003688; DNA replication origin binding
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0005656; pre-replicative complex
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; db_xref=PMID:10077566; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YPR162C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "orc4" ; product "origin recognition complex subunit Orc4" ;
chromosome2 GeneDB CDS 2025543 2028461 . + . mRNA SPBP23A10.13 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2028833 2029258 . - . mRNA SPBP23A10.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.14c" ; systematic_id "SPBP23A10.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2029259 2031035 . - . mRNA SPBP23A10.14c ; systematic_id "SPBP23A10.14c" ; colour "2" ; gene "ell1 ||| SPBP23A10.14c" ; Alias "ell1" ; db_xref "SPD:36/36C07" ; GO "GO:0032783; ELL-EFF RNA elongation complex
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0005515; protein binding
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0032968; positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045944; positive regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17150956; date=20061212 ||| term=name description, Eleven- nineteen Lysine rich in Leukemia; cv=name_description; date=20061213 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20090811 ||| term=phenotype, sensitive to 6- azauracil; cv=phenotype; db_xref=PMID:17150956; date=20091215 ||| term=human ELL ortholog; date=20100217" ; primary_name "ell1" ; product "RNA polymerase II transcription elongation factor SpELL" ;
chromosome2 GeneDB CDS 2029259 2030486 . - . mRNA SPBP23A10.14c ; colour "2" ;
chromosome2 GeneDB CDS 2030587 2030795 . - . mRNA SPBP23A10.14c ; colour "2" ;
chromosome2 GeneDB CDS 2030871 2031035 . - . mRNA SPBP23A10.14c ; colour "2" ;
chromosome2 GeneDB misc_feature 2030487 2030505 . - . misc_feature unknown_1533 ; colour "6" ; note "ctaatatttgtaaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2030487 2030586 . - . intron SPBP23A10.14c ; db_xref "PMID:17150956" ; systematic_id "SPBP23A10.14c" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 2030581 2030586 . - . misc_feature unknown_1534 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2030796 2030817 . - . misc_feature unknown_1535 ; colour "6" ; note "ctaaccaatatactttttttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2030796 2030870 . - . intron SPBP23A10.14c ; db_xref "PMID:17150956" ; systematic_id "SPBP23A10.14c" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 2030865 2030870 . - . misc_feature unknown_1536 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2031034 2031140 . - . mRNA SPBP23A10.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP23A10.14c" ; systematic_id "SPBP23A10.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 2032160 2032233 . + . tRNA SPBTRNAASN.02 ; systematic_id "SPBTRNAASN.02" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033449; GTT codon-amino acid adaptor activity" ; gene "SPBTRNAASN.02" ; product "tRNA Asparagine" ; note "tRNA Asn anticodon GTT, Cove score 86.64" ;
chromosome2 GeneDB rRNA 2032410 2032528 . + . rRNA SPRRNA.39 ; systematic_id "SPRRNA.39" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.39" ; product "5S rRNA" ;
chromosome2 GeneDB 3'-UTR 2032842 2033469 . - . mRNA SPBP23A10.15c ; Alias "qcr1" ; ID "SPBP23A10.15c" ; db_xref "EMBL:D89152" ; systematic_id "SPBP23A10.15c" ; primary_name "qcr1" ;
chromosome2 GeneDB CDS_parts 2033470 2034843 . - . mRNA SPBP23A10.15c ; systematic_id "SPBP23A10.15c" ; colour "7" ; gene "qcr1 ||| mas1 ||| SPBP23A10.15c" ; Alias "qcr1" ; db_xref "SPD:21/21C09" ; synonym "mas1" ; GO "GO:0017087; mitochondrial processing peptidase complex
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0004222; metalloendopeptidase activity
GO:0009060; aerobic respiration
GO:0006627; mitochondrial protein processing
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR163C and YBL045C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "qcr1" ; product "mitochondrial processing peptidase (MPP) complex beta subunit Qcr1 (predicted)" ; EC_number "3.4.24.64" ;
chromosome2 GeneDB CDS 2033470 2034843 . - . mRNA SPBP23A10.15c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2034844 2034907 . - . mRNA SPBP23A10.15c ; Alias "qcr1" ; ID "SPBP23A10.15c" ; db_xref "EMBL:D89152" ; systematic_id "SPBP23A10.15c" ; primary_name "qcr1" ;
chromosome2 GeneDB CDS_parts 2036019 2036579 . + . mRNA SPBP23A10.16 ; systematic_id "SPBP23A10.16" ; colour "2" ; gene "sdh4 ||| tim18 ||| SPBP23A10.16" ; note "This gene could be involved in both the succinate dehydrogenase complex (ubiquinone) (cytochrome b small subunit) and inner membrane translocase component due to similarity to S. cerevisiae YLR164W, YDR178W and YOR297C" ; Alias "sdh4" ; db_xref "SPD:05/05G11" ; synonym "tim18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by CCAAT complex; db_xref=PMID:16963626; evidence=IMP; cv=gene_ex; date=20070516 ||| term=gene expression, promoter contains CCAAT element; db_xref=PMID:16963626; evidence=IMP; cv=gene_ex; date=20070516 ||| term=orthologous to S. cerevisiae YLR164W and YOR297C and YDR178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human SDHD ortholog; date=20100217" ; GO "GO:0016021; integral to membrane
GO:0042721; mitochondrial inner membrane protein insertion complex
GO:0005749; respiratory chain complex II (sensu Eukaryota)
GO:0043495; protein anchor
GO:0006121; mitochondrial electron transport, succinate to ubiquinone
GO:0045039; protein import into mitochondrial inner membrane
GO:0020037; heme binding" ; primary_name "sdh4" ; product "TIM22 inner membrane protein import complex anchor subunit Tim18" ;
chromosome2 GeneDB CDS 2036019 2036579 . + . mRNA SPBP23A10.16 ; colour "2" ;
chromosome2 GeneDB misc_feature 2036773 2037708 . + . misc_feature unknown_1537 ; note "nominal overlap with p1 clone SPBP23A10 and cosmid SPBC29A3" ;
chromosome2 GeneDB CDS_parts 2037092 2037394 . + . mRNA SPBC29A3.21 ; db_xref "SPD:51/51F08" ; systematic_id "SPBC29A3.21" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC29A3.21" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2037092 2037394 . + . mRNA SPBC29A3.21 ; colour "8" ;
chromosome2 GeneDB CDS_parts 2037987 2040701 . + . mRNA SPBC29A3.01 ; systematic_id "SPBC29A3.01" ; colour "7" ; gene "SPBC29A3.01 ||| ccc2" ; Alias "ccc2" ; db_xref "SPD:39/39A07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Menkes/Wilson disease; date=20061010 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061010 ||| term=orthologous to S. cerevisiae YDR270W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000139; Golgi membrane
GO:0005524; ATP binding
GO:0004008; copper-exporting ATPase activity
GO:0060003; copper ion export
GO:0006878; cellular copper ion homeostasis" ; primary_name "ccc2" ; product "copper transporting ATPase Ccc2 (predicted)" ; EC_number "3.6.3.4" ;
chromosome2 GeneDB CDS 2037987 2040701 . + . mRNA SPBC29A3.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2040702 2040717 . + . mRNA SPBC29A3.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.01" ; systematic_id "SPBC29A3.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2040828 2040892 . - . mRNA SPBC29A3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.02c" ; systematic_id "SPBC29A3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2040893 2042146 . - . mRNA SPBC29A3.02c ; systematic_id "SPBC29A3.02c" ; colour "2" ; gene "his7 ||| SPBC29A3.02c" ; note "similarity to YCL030C is at the N-term, S. pombe his2 is similar to YCL030C at the C-term" ; Alias "his7" ; db_xref "SPD:32/32G01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL030C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000105; histidine biosynthesis
GO:0004635; phosphoribosyl-AMP cyclohydrolase activity
GO:0004636; phosphoribosyl-ATP diphosphatase activity" ; primary_name "his7" ; product "phosphoribosyl-AMP cyclohydrolase/phosphoribosyl- ATP pyrophosphohydrolase His7" ; EC_number "3.5.4.19 ||| 3.6.1.31" ;
chromosome2 GeneDB CDS 2040893 2042146 . - . mRNA SPBC29A3.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2042145 2042203 . - . mRNA SPBC29A3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.02c" ; systematic_id "SPBC29A3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2042507 2043763 . - . mRNA SPBC29A3.03c ; db_xref "SPD:20/20A11" ; systematic_id "SPBC29A3.03c" ; colour "7" ; GO "GO:0034657; GID complex
GO:0005829; cytosol
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0045721; negative regulation of gluconeogenesis
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=CLTH domain; qualifier=inferred from context; date=20060726 ||| term=orthologous to S. cerevisiae YDR255C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC29A3.03c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB CDS 2042507 2043060 . - . mRNA SPBC29A3.03c ; colour "7" ;
chromosome2 GeneDB CDS 2043121 2043763 . - . mRNA SPBC29A3.03c ; colour "7" ;
chromosome2 GeneDB misc_feature 2043061 2043074 . - . misc_feature unknown_1538 ; colour "6" ; note "ttaacttatataag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2043115 2043120 . - . misc_feature unknown_1539 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB snoRNA 2044273 2044572 . + . snoRNA SPSNORNA.25 ; Alias "snoZ30" ; db_xref "EMBL:AJ007736" ; systematic_id "SPSNORNA.25" ; GO "GO:0030563; snRNA 2'-O-ribose methylation guide activity
GO:0000154; rRNA modification" ; primary_name "snoZ30" ; gene "Z30 ||| SPSNORNA.25 ||| snoZ30" ; product "C/D containing snoRNA Z30" ;
chromosome2 GeneDB CDS_parts 2045495 2046340 . + . mRNA SPBC29A3.04 ; systematic_id "SPBC29A3.04" ; colour "7" ; gene "rpl8 ||| SPBC29A3.04" ; Alias "rpl8" ; obsolete_name "rpl701 ||| rpl7a" ; db_xref "SPD:32/32A03" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL033C and YLL045C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl8" ; product "60S ribosomal protein L7a/L8 (predicted)" ;
chromosome2 GeneDB CDS 2045495 2045497 . + . mRNA SPBC29A3.04 ; colour "7" ;
chromosome2 GeneDB CDS 2045564 2046340 . + . mRNA SPBC29A3.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 2045498 2045503 . + . misc_feature unknown_1540 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2045549 2045563 . + . misc_feature unknown_1541 ; colour "6" ; note "ctaacataaatgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2046341 2046442 . + . mRNA SPBC29A3.04 ; ID "SPBC29A3.04" ; systematic_id "SPBC29A3.04" ; note "mRNA from AU007686" ;
chromosome2 GeneDB 5'-UTR 2046987 2047111 . + . mRNA SPBC29A3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.05" ; systematic_id "SPBC29A3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2047112 2047666 . + . mRNA SPBC29A3.05 ; systematic_id "SPBC29A3.05" ; colour "2" ; gene "vps71 ||| SPBC29A3.05" ; Alias "vps71" ; db_xref "SPD:05/05G02" ; GO "GO:0006338; chromatin remodeling
GO:0000812; Swr1 complex
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-HIT; date=19700101 ||| term=orthologous to S. cerevisiae YML041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps71" ; product "Swr1 complex subunit Vps71" ;
chromosome2 GeneDB CDS 2047112 2047168 . + . mRNA SPBC29A3.05 ; colour "2" ;
chromosome2 GeneDB CDS 2047211 2047316 . + . mRNA SPBC29A3.05 ; colour "2" ;
chromosome2 GeneDB CDS 2047365 2047444 . + . mRNA SPBC29A3.05 ; colour "2" ;
chromosome2 GeneDB CDS 2047490 2047666 . + . mRNA SPBC29A3.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 2047169 2047174 . + . misc_feature unknown_1542 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2047197 2047210 . + . misc_feature unknown_1543 ; colour "6" ; note "ctaatggatgatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2047317 2047322 . + . misc_feature unknown_1544 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 2047317 2047364 . + . intron SPBC29A3.05 ; systematic_id "SPBC29A3.05" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 2047351 2047364 . + . misc_feature unknown_1545 ; colour "6" ; note "ctaacttgttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2047445 2047450 . + . misc_feature unknown_1546 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB intron 2047445 2047489 . + . intron SPBC29A3.05 ; systematic_id "SPBC29A3.05" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 2047476 2047489 . + . misc_feature unknown_1547 ; colour "6" ; note "ctaaccatatatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2047667 2047783 . + . mRNA SPBC29A3.05 ; ID "SPBC29A3.05" ; systematic_id "SPBC29A3.05" ; note "mRNA from AU013314" ;
chromosome2 GeneDB 5'-UTR 2048191 2048335 . + . mRNA SPBC29A3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.06" ; systematic_id "SPBC29A3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2048336 2049896 . + . mRNA SPBC29A3.06 ; db_xref "SPD:35/35A03" ; systematic_id "SPBC29A3.06" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YJL069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090202 ||| term=warning, frameshifted; residue=518; cv=warning; db_xref=PMID:16823372; date=20090202" ; gene "SPBC29A3.06" ; product "CGI-48 family (predicted)" ;
chromosome2 GeneDB CDS 2048336 2049892 . + . mRNA SPBC29A3.06 ; colour "7" ;
chromosome2 GeneDB CDS 2049894 2049896 . + . mRNA SPBC29A3.06 ; colour "7" ;
chromosome2 GeneDB misc_feature 2049893 2049894 . + . misc_feature unknown_1548 ; note "discrepency with p23A10 - which has only 2 Ts. Waiting for base check." ;
chromosome2 GeneDB 3'-UTR 2050007 2050075 . + . mRNA SPBC29A3.06 ; ID "SPBC29A3.06" ; db_xref "EMBL:D89098" ; systematic_id "SPBC29A3.06" ;
chromosome2 GeneDB misc_feature 2050184 2050197 . - . misc_feature unknown_1549 ; colour "6" ; note "ttaacgtgtaatag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2050258 2050695 . - . mRNA SPBC29A3.07c ; systematic_id "SPBC29A3.07c" ; colour "7" ; gene "SPBC29A3.07c" ; Alias "sab14" ; db_xref "SPD:42/42E05" ; GO "GO:0005686; snRNP U2
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000384; first spliceosomal transesterification activity
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human Sf3b14 homolog; date=20090922" ; primary_name "sab14" ; product "U2 snRNP-associated protein Sf3b14 homolog (predicted)" ; reserved_name "sab14" ;
chromosome2 GeneDB CDS 2050258 2050358 . - . mRNA SPBC29A3.07c ; colour "7" ;
chromosome2 GeneDB CDS 2050452 2050695 . - . mRNA SPBC29A3.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 2050298 2050303 . - . misc_feature unknown_1550 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2050359 2050374 . - . misc_feature unknown_1551 ; colour "6" ; note "ttaactttttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2050446 2050451 . - . misc_feature unknown_1552 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_RNA 2051835 2051899 . + . misc_RNA SPNCRNA.386 ; db_xref "PMID:18488015" ; synonym "SPNG1559" ; systematic_id "SPNCRNA.386" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 2052592 2053032 . + . mRNA SPBC29A3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.08" ; systematic_id "SPBC29A3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2053033 2053600 . + . mRNA SPBC29A3.08 ; systematic_id "SPBC29A3.08" ; colour "7" ; gene "pof4 ||| SPBC29A3.08" ; note "may not be an F-box protein" ; Alias "pof4" ; db_xref "SPD:06/06F06" ; GO "GO:0008023; transcription elongation factor complex
GO:0005515; protein binding
GO:0003711; transcriptional elongation regulator activity
GO:0006368; RNA elongation from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL230C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090814" ; primary_name "pof4" ; product "elongin-A, F-box protein Pof4 (predicted)" ;
chromosome2 GeneDB CDS 2053033 2053517 . + . mRNA SPBC29A3.08 ; colour "7" ;
chromosome2 GeneDB CDS 2053519 2053600 . + . mRNA SPBC29A3.08 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2053633 2054028 . + . mRNA SPBC29A3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.08" ; systematic_id "SPBC29A3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2054190 2054213 . - . mRNA SPBC29A3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.09c" ; systematic_id "SPBC29A3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2054214 2056424 . - . mRNA SPBC29A3.09c ; db_xref "SPD:38/38A04" ; systematic_id "SPBC29A3.09c" ; colour "7" ; GO "GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0006448; regulation of translational elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YFR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC29A3.09c" ; product "AAA family ATPase Gcn20 (predicted)" ;
chromosome2 GeneDB CDS 2054214 2056424 . - . mRNA SPBC29A3.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2056423 2056445 . - . mRNA SPBC29A3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.09c" ; systematic_id "SPBC29A3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2056668 2057097 . - . mRNA SPBC29A3.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.10c" ; systematic_id "SPBC29A3.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2057098 2057602 . - . mRNA SPBC29A3.10c ; systematic_id "SPBC29A3.10c" ; colour "7" ; gene "atp14 ||| SPBC29A3.10c" ; Alias "atp14" ; db_xref "SPD:05/05A01" ; GO "GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR295C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "atp14" ; product "F1-ATPase subunit H (predicted)" ;
chromosome2 GeneDB CDS 2057098 2057121 . - . mRNA SPBC29A3.10c ; colour "7" ;
chromosome2 GeneDB CDS 2057168 2057358 . - . mRNA SPBC29A3.10c ; colour "7" ;
chromosome2 GeneDB CDS 2057411 2057446 . - . mRNA SPBC29A3.10c ; colour "7" ;
chromosome2 GeneDB CDS 2057495 2057540 . - . mRNA SPBC29A3.10c ; colour "7" ;
chromosome2 GeneDB CDS 2057588 2057602 . - . mRNA SPBC29A3.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 2057122 2057137 . - . misc_feature unknown_1553 ; colour "6" ; note "ctaacttttccttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2057162 2057167 . - . misc_feature unknown_1554 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2057359 2057377 . - . misc_feature unknown_1555 ; colour "6" ; note "cttacacgtcgtgtcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2057405 2057410 . - . misc_feature unknown_1556 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2057447 2057461 . - . misc_feature unknown_1557 ; colour "6" ; note "ctaatggcaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2057489 2057494 . - . misc_feature unknown_1558 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2057541 2057551 . - . misc_feature unknown_1559 ; colour "6" ; note "ctaatatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2057582 2057587 . - . misc_feature unknown_1560 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 2058263 2059156 . - . mRNA SPBC29A3.11c ; db_xref "SPD:12/12C01" ; systematic_id "SPBC29A3.11c" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0046943; carboxylic acid transporter activity
GO:0046942; carboxylic acid transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR130C and YOR100C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=19700101" ; gene "SPBC29A3.11c" ; product "mitochondrial carboxylic acid transporter (predicted)" ;
chromosome2 GeneDB CDS 2058263 2059156 . - . mRNA SPBC29A3.11c ; colour "7" ;
chromosome2 GeneDB CDS_parts 2059792 2060370 . + . mRNA SPBC29A3.12 ; systematic_id "SPBC29A3.12" ; colour "7" ; gene "rps902 ||| rps9-2 ||| rps9b ||| SPBC29A3.12" ; Alias "rps902" ; db_xref "SPD:39/39H11" ; synonym "rps9-2 ||| rps9b" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL081W and YBR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps902" ; product "40S ribosomal protein S9 (predicted)" ;
chromosome2 GeneDB CDS 2059792 2060370 . + . mRNA SPBC29A3.12 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2060371 2060403 . + . mRNA SPBC29A3.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.12" ; systematic_id "SPBC29A3.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2061103 2062182 . - . mRNA SPBC29A3.13 ; systematic_id "SPBC29A3.13" ; colour "2" ; gene "pdp1 ||| SPBC29A3.13" ; Alias "pdp1" ; db_xref "SPD:16/16G08" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0006338; chromatin remodeling
GO:0070510; regulation of histone H4-K20 methylation
GO:0070510; regulation of histone H4-K20 methylation
; DNA damage checkpoint
; DNA damage checkpoint
GO:0034613; cellular protein localization to chromosome
GO:0005515; protein binding
GO:0000077; DNA damage checkpoint
GO:0035064; methylated histone residue binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR455W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, DNA damage checkpoint defects; cv=phenotype; db_xref=PMID:19250904; date=20090316" ; primary_name "pdp1" ; product "PWWP domain protein Pdp1" ;
chromosome2 GeneDB CDS 2061103 2062182 . - . mRNA SPBC29A3.13 ; colour "2" ;
chromosome2 GeneDB CDS_parts 2062472 2066110 . - . mRNA SPBC29A3.14c ; systematic_id "SPBC29A3.14c" ; colour "2" ; gene "trt1 ||| SPBC29A3.14c" ; Alias "trt1" ; db_xref "SPD:41/41A09" ; GO "GO:0000781; chromosome, telomeric region
GO:0000228; nuclear chromosome
GO:0000333; telomerase catalytic core complex
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0003721; telomeric template RNA reverse transcriptase activity
GO:0006278; RNA-dependent DNA replication
GO:0007004; telomere maintenance via telomerase" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9252327; qualifier=deletion; date=20100708 ||| term=orthologous to S. cerevisiae YLR318W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15642092; date=20090110" ; primary_name "trt1" ; product "telomerase reverse transcriptase 1 protein Trt1" ;
chromosome2 GeneDB CDS 2062472 2062634 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2062677 2062773 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2062817 2062983 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2063023 2063272 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2063310 2063523 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2063565 2063713 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2063760 2063944 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2063986 2064155 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2064207 2064323 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2064364 2064633 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2064673 2064743 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2064783 2065175 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2065212 2065474 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2065526 2065644 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2065716 2065796 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB CDS 2065853 2066110 . - . mRNA SPBC29A3.14c ; colour "2" ;
chromosome2 GeneDB misc_feature 2062635 2062646 . - . misc_feature unknown_1561 ; colour "6" ; note "ttgacacatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2062671 2062676 . - . misc_feature unknown_1562 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2062774 2062787 . - . misc_feature unknown_1563 ; colour "6" ; note "ttaattaaccttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2062811 2062816 . - . misc_feature unknown_1564 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2062984 2062998 . - . misc_feature unknown_1565 ; colour "6" ; note "ctgacaaataatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2063017 2063022 . - . misc_feature unknown_1566 ; colour "6" ; note "gtatac, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2063273 2063285 . - . misc_feature unknown_1567 ; colour "6" ; note "ctaaccgttgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2063304 2063309 . - . misc_feature unknown_1568 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2063524 2063536 . - . misc_feature unknown_1569 ; colour "6" ; note "ctaatgaaactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2063559 2063564 . - . misc_feature unknown_1570 ; colour "6" ; note "gtatac, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2063714 2063731 . - . misc_feature unknown_1571 ; colour "6" ; note "ttaacaaattcttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2063754 2063759 . - . misc_feature unknown_1572 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2063945 2063956 . - . misc_feature unknown_1573 ; colour "6" ; note "ttaattttgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2063980 2063985 . - . misc_feature unknown_1574 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2064156 2064173 . - . misc_feature unknown_1575 ; colour "6" ; note "ctaatctattattagcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2064201 2064206 . - . misc_feature unknown_1576 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2064324 2064336 . - . misc_feature unknown_1577 ; colour "6" ; note "ctaatattttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2064358 2064363 . - . misc_feature unknown_1578 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2064634 2064644 . - . misc_feature unknown_1579 ; colour "6" ; note "ttaacaatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2064667 2064672 . - . misc_feature unknown_1580 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2064744 2064759 . - . misc_feature unknown_1581 ; colour "6" ; note "ctaacgattttaccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2064777 2064782 . - . misc_feature unknown_1582 ; colour "6" ; note "gtattg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2065176 2065185 . - . misc_feature unknown_1583 ; colour "6" ; note "ctaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2065206 2065211 . - . misc_feature unknown_1584 ; colour "6" ; note "gtaact, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2065475 2065487 . - . misc_feature unknown_1585 ; colour "6" ; note "ctgacaagtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2065520 2065525 . - . misc_feature unknown_1586 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2065645 2065657 . - . misc_feature unknown_1587 ; colour "6" ; note "ttaaccgataaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2065710 2065715 . - . misc_feature unknown_1588 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2065797 2065811 . - . misc_feature unknown_1589 ; colour "6" ; note "ctaatatatgggcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2065847 2065852 . - . misc_feature unknown_1590 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 2066294 2066507 . - . mRNA SPBC29A3.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.15c" ; systematic_id "SPBC29A3.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2066508 2067938 . - . mRNA SPBC29A3.15c ; systematic_id "SPBC29A3.15c" ; colour "7" ; gene "SPBC29A3.15c ||| rsm23" ; Alias "rsm23" ; db_xref "SPD:22/22A03" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL129C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rsm23" ; product "mitochondrial ribosomal protein subunit S23 (predicted)" ;
chromosome2 GeneDB CDS 2066508 2067938 . - . mRNA SPBC29A3.15c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2067939 2067957 . - . mRNA SPBC29A3.15c ; ID "SPBC29A3.15c" ; systematic_id "SPBC29A3.15c" ; note "mRNA from AU008049" ;
chromosome2 GeneDB 5'-UTR 2068155 2068392 . + . mRNA SPBC29A3.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.16" ; systematic_id "SPBC29A3.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2068393 2068893 . + . mRNA SPBC29A3.16 ; systematic_id "SPBC29A3.16" ; colour "7" ; gene "SPBC29A3.16 ||| rrs1" ; Alias "rrs1" ; db_xref "SPD:04/04H05" ; GO "GO:0005634; nucleus
GO:0006364; rRNA processing
GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR294W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rrs1" ; product "ribosome biogenesis protein Rrs1 (predicted)" ;
chromosome2 GeneDB CDS 2068393 2068893 . + . mRNA SPBC29A3.16 ; colour "7" ;
chromosome2 GeneDB tRNA 2069487 2069557 . + . tRNA SPBTRNAGLY.09 ; systematic_id "SPBTRNAGLY.09" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033422; CCC codon-amino acid adaptor activity" ; gene "SPBTRNAGLY.09" ; product "tRNA Glycine" ; note "tRNA Gly anticodon CCC, Cove score 60.35" ;
chromosome2 GeneDB 5'-UTR 2070199 2070385 . + . mRNA SPBC29A3.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.17" ; systematic_id "SPBC29A3.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2070386 2072019 . + . mRNA SPBC29A3.17 ; systematic_id "SPBC29A3.17" ; colour "2" ; gene "gef3 ||| SPBC29A3.17" ; Alias "gef3" ; db_xref "SPD:26/26B01" ; GO "GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0032319; regulation of Rho GTPase activity
GO:0035023; regulation of Rho protein signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14637153; date=19700101 ||| term=human DNMBP ortholog; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gef3" ; product "RhoGEF Gef3" ;
chromosome2 GeneDB CDS 2070386 2071291 . + . mRNA SPBC29A3.17 ; colour "2" ;
chromosome2 GeneDB CDS 2071348 2072019 . + . mRNA SPBC29A3.17 ; colour "2" ;
chromosome2 GeneDB misc_feature 2071292 2071297 . + . misc_feature unknown_1591 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2071333 2071348 . + . misc_feature unknown_1592 ; colour "6" ; note "ctaattgttttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2072020 2072283 . + . mRNA SPBC29A3.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.17" ; systematic_id "SPBC29A3.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2073274 2073322 . + . mRNA SPBC29A3.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A3.18" ; systematic_id "SPBC29A3.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2073323 2074330 . + . mRNA SPBC29A3.18 ; systematic_id "SPBC29A3.18" ; colour "7" ; gene "cyt1 ||| SPBC29A3.18" ; Alias "cyt1" ; db_xref "SPD:14/14H08" ; GO "GO:0045153; electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750; respiratory chain complex III (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cyt1" ; product "cytochrome c1 Cyt1 (predicted)" ;
chromosome2 GeneDB CDS 2073323 2073382 . + . mRNA SPBC29A3.18 ; colour "7" ;
chromosome2 GeneDB CDS 2073467 2074330 . + . mRNA SPBC29A3.18 ; colour "7" ;
chromosome2 GeneDB misc_feature 2073383 2073388 . + . misc_feature unknown_1593 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2073453 2073466 . + . misc_feature unknown_1594 ; colour "6" ; note "ttaacggggtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2074331 2074742 . + . mRNA SPBC29A3.18 ; ID "SPBC29A3.18" ; systematic_id "SPBC29A3.18" ; note "mRNA from AU007304" ;
chromosome2 GeneDB 5'-UTR 2075364 2075664 . + . mRNA SPBC18E5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.01" ; systematic_id "SPBC18E5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2075665 2076693 . + . mRNA SPBC18E5.01 ; systematic_id "SPBC18E5.01" ; colour "10" ; gene "SPBC29A3.19 ||| SPBC18E5.01" ; Alias "SPBC29A3.19" ; db_xref "SPD:15/15E08" ; synonym "SPBC29A3.19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; primary_name "SPBC29A3.19" ; product "cycloisomerase 2 family" ;
chromosome2 GeneDB CDS 2075665 2076693 . + . mRNA SPBC18E5.01 ; colour "10" ;
chromosome2 GeneDB misc_feature 2076255 2079542 . + . misc_feature unknown_1595 ; note "nominal overlap with cosmid SPBC29A3 and cosmid SPBC18E5" ;
chromosome2 GeneDB 3'-UTR 2076694 2077124 . + . mRNA SPBC18E5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.01" ; systematic_id "SPBC18E5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2077074 2077162 . - . mRNA SPBC18E5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.02c" ; systematic_id "SPBC18E5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2077163 2078859 . - . mRNA SPBC18E5.02c ; systematic_id "SPBC18E5.02c" ; colour "7" ; gene "SPBC29A3.20c ||| SPBC18E5.02c" ; Alias "SPBC29A3.20c" ; db_xref "SPD:35/35D03" ; synonym "SPBC29A3.20c" ; GO "GO:0004758; serine C-palmitoyltransferase activity
GO:0030148; sphingolipid biosynthesis
GO:0017059; serine C-palmitoyltransferase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR296C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC29A3.20c" ; product "serine palmitoyltransferase complex subunit (predicted)" ; EC_number "2.3.1.50" ;
chromosome2 GeneDB CDS 2077163 2077354 . - . mRNA SPBC18E5.02c ; colour "7" ;
chromosome2 GeneDB CDS 2077408 2078398 . - . mRNA SPBC18E5.02c ; colour "7" ;
chromosome2 GeneDB CDS 2078455 2078555 . - . mRNA SPBC18E5.02c ; colour "7" ;
chromosome2 GeneDB CDS 2078614 2078859 . - . mRNA SPBC18E5.02c ; colour "7" ;
chromosome2 GeneDB misc_feature 2077355 2077367 . - . misc_feature unknown_1596 ; colour "6" ; note "ctaacatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2077402 2077407 . - . misc_feature unknown_1597 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2078399 2078412 . - . misc_feature unknown_1598 ; colour "6" ; note "ctgaccatatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2078449 2078454 . - . misc_feature unknown_1599 ; colour "6" ; note "gtatac, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2078556 2078570 . - . misc_feature unknown_1600 ; colour "6" ; note "ctaatgagcctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2078608 2078613 . - . misc_feature unknown_1601 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2078858 2078935 . - . mRNA SPBC18E5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.02c" ; systematic_id "SPBC18E5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2079330 2079488 . - . mRNA SPBC18E5.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.03c" ; systematic_id "SPBC18E5.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2079489 2080398 . - . mRNA SPBC18E5.03c ; systematic_id "SPBC18E5.03c" ; colour "2" ; gene "SPBC18E5.03c ||| sim4" ; Alias "sim4" ; db_xref "SPD:12/12F01" ; GO "GO:0000939; inner kinetochore of condensed chromosome
GO:0000070; mitotic sister chromatid segregation
GO:0005634; nucleus
GO:0030702; chromatin silencing at centromere
GO:0034613; cellular protein localization
GO:0005515; protein binding
GO:0031511; Mis6-Sim4 complex
GO:0051382; kinetochore assembly
GO:0000779; condensed chromosome, pericentric region
GO:0034080; DNA replication-independent nucleosome assembly at centromere" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; db_xref=PMID:12719471; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090303 ||| term=species distribution, conserved in Vertebrates; date=20090303 ||| term=species distribution, conserved in Metazoa; date=20090303 ||| term=species distribution, conserved in Eukaryotes; date=20090303 ||| term=species distribution, conserved in Eukaryotes only; date=20090303 ||| term=human CENP-K ortholog; qualifier=predicted; date=20090424 ||| term=name description, Silencng In the Middle of the centromere; date=20100727 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100805" ; primary_name "sim4" ; product "kinetochore protein, CENP-K ortholog, Sim4" ;
chromosome2 GeneDB CDS 2079489 2079641 . - . mRNA SPBC18E5.03c ; colour "2" ;
chromosome2 GeneDB CDS 2079718 2080398 . - . mRNA SPBC18E5.03c ; colour "2" ;
chromosome2 GeneDB misc_feature 2079642 2079655 . - . misc_feature unknown_1602 ; colour "6" ; note "ctaactaaattaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2079712 2079717 . - . misc_feature unknown_1603 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB LTR 2080929 2081276 . - . LTR unknown_1604 ; note "tf2-type lone LTR" ;
chromosome2 GeneDB CDS_parts 2081514 2082179 . + . mRNA SPBC18E5.04 ; systematic_id "SPBC18E5.04" ; colour "2" ; gene "rpl1001 ||| rpl10-1 ||| SPBC18E5.04 ||| rpl10" ; Alias "rpl1001" ; db_xref "SPD:31/31G09" ; synonym "rpl10-1 ||| rpl10" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR075W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1001" ; product "60S ribosomal protein L10" ;
chromosome2 GeneDB CDS 2081514 2082179 . + . mRNA SPBC18E5.04 ; colour "2" ;
chromosome2 GeneDB CDS_parts 2082487 2083485 . - . mRNA SPBC18E5.05c ; db_xref "SPD:14/14F06" ; systematic_id "SPBC18E5.05c" ; colour "7" ; GO "GO:0006400; tRNA modification
GO:0033588; Elongator holoenzyme complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR187W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC18E5.05c" ; product "elongator complex subunit Iki1 (predicted)" ;
chromosome2 GeneDB CDS 2082487 2083309 . - . mRNA SPBC18E5.05c ; colour "7" ;
chromosome2 GeneDB CDS 2083364 2083485 . - . mRNA SPBC18E5.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 2083310 2083323 . - . misc_feature unknown_1605 ; colour "6" ; note "ctcatacattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2083358 2083363 . - . misc_feature unknown_1606 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 2083868 2084184 . + . mRNA SPBC18E5.06 ; systematic_id "SPBC18E5.06" ; colour "2" ; gene "rps21 ||| SPBC18E5.06" ; Alias "rps21" ; db_xref "SPD:31/31C08" ; GO "GO:0042274; ribosomal small subunit biogenesis
GO:0006412; translation
GO:0015935; small ribosomal subunit
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14623272; date=19700101 ||| term=orthologous to S. cerevisiae YKR057W and YJL136C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rps21" ; product "40S ribosomal protein S21" ;
chromosome2 GeneDB CDS 2083868 2083917 . + . mRNA SPBC18E5.06 ; colour "2" ;
chromosome2 GeneDB CDS 2083971 2084184 . + . mRNA SPBC18E5.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 2083918 2083923 . + . misc_feature unknown_1607 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB intron 2083918 2083970 . + . intron SPBC18E5.06 ; systematic_id "SPBC18E5.06" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2083957 2083970 . + . misc_feature unknown_1608 ; colour "6" ; note "ctaattagaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_RNA 2084400 2084672 . + . misc_RNA SPNCRNA.110 ; db_xref "EMBL:AU009450" ; systematic_id "SPNCRNA.110" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU009450; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU009450; date=20050412" ; gene "SPNCRNA.110" ; product "non-coding RNA (predicted)" ; note "mRNA from AU009450; not associated with an ORF" ;
chromosome2 GeneDB 5'-UTR 2085537 2085621 . + . mRNA SPBC18E5.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.07" ; systematic_id "SPBC18E5.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2085622 2087469 . + . mRNA SPBC18E5.07 ; db_xref "SPD:26/26B10" ; systematic_id "SPBC18E5.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR003W; date=20091106 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106" ; colour "10" ; gene "SPBC18E5.07" ; product "DUF3210 family protein" ;
chromosome2 GeneDB CDS 2085622 2087469 . + . mRNA SPBC18E5.07 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 2087470 2087521 . + . mRNA SPBC18E5.07 ; ID "SPBC18E5.07" ; systematic_id "SPBC18E5.07" ; note "mRNA from SPD218" ;
chromosome2 GeneDB 5'-UTR 2088238 2088439 . + . mRNA SPBC18E5.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.08" ; systematic_id "SPBC18E5.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2088440 2089000 . + . mRNA SPBC18E5.08 ; db_xref "SPD:05/05G12" ; systematic_id "SPBC18E5.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=19700101" ; colour "10" ; gene "SPBC18E5.08" ; product "N-acetyltransferase (predicted)" ;
chromosome2 GeneDB CDS 2088440 2089000 . + . mRNA SPBC18E5.08 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 2089001 2089775 . + . mRNA SPBC18E5.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.08" ; systematic_id "SPBC18E5.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2089944 2090943 . - . mRNA SPBC18E5.14c ; db_xref "SPD:51/51H05" ; obsolete_name "SPBC18E5.09c" ; systematic_id "SPBC18E5.14c" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, gene structure updated; date=20110115 ||| term=warning, gene structure may be incorrect; attribution=C.Chahwan; date=20110115 ||| term=warning, gene merge; date=20110115" ; gene "SPBC18E5.14c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2089944 2090330 . - . mRNA SPBC18E5.14c ; colour "8" ;
chromosome2 GeneDB CDS 2090431 2090556 . - . mRNA SPBC18E5.14c ; colour "8" ;
chromosome2 GeneDB CDS 2090620 2090943 . - . mRNA SPBC18E5.14c ; colour "8" ;
chromosome2 GeneDB misc_feature 2090329 2090574 . + . misc_feature unknown_1609 ; note "previously annotated as SPNCRNA.109" ;
chromosome2 GeneDB LTR 2091487 2091720 . + . LTR unknown_1610 ; colour "4" ; note "degraded LTR" ;
chromosome2 GeneDB CDS_parts 2091892 2092234 . + . mRNA SPBC18E5.15 ; obsolete_name "SPBC18E5.14" ; systematic_id "SPBC18E5.15" ; pseudo "_no_value" ; colour "13" ; gene "SPBC18E5.15" ; product "pseudogene, DUF1773 family" ; note "similar to S. pombe SPCC330.04C ||| N-terminal truncated, frameshifted, " ;
chromosome2 GeneDB CDS 2091892 2091985 . + . mRNA SPBC18E5.15 ; colour "13" ;
chromosome2 GeneDB CDS 2091987 2092234 . + . mRNA SPBC18E5.15 ; colour "13" ;
chromosome2 GeneDB CDS_parts 2092851 2094277 . + . mRNA SPBC18E5.10 ; systematic_id "SPBC18E5.10" ; colour "7" ; gene "SPBC18E5.10" ; note "previously annotated as respiratory chain NADH dehydrogenase complex, this mapping was removed due to lack of the remaining 40 subunits found in mammals (PMID:1518044)" ; db_xref "SPD:21/21H10" ; GO "GO:0005739; mitochondrion
GO:0016226; iron-sulfur cluster assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "iron sulfur cluster assembly protein (predicted)" ;
chromosome2 GeneDB CDS 2092851 2093057 . + . mRNA SPBC18E5.10 ; colour "7" ;
chromosome2 GeneDB CDS 2093126 2094277 . + . mRNA SPBC18E5.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 2093058 2093063 . + . misc_feature unknown_1611 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2093112 2093125 . + . misc_feature unknown_1612 ; colour "6" ; note "ctaatatgacgaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2093406 2094392 . - . mRNA SPBC18E5.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.11c" ; systematic_id "SPBC18E5.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2094217 2094277 . + . misc_feature unknown_1613 ; note "SPBC18E5.10, see c18E5 for complete CDS" ;
chromosome2 GeneDB misc_feature 2094217 2099254 . + . misc_feature unknown_1614 ; note "nominal overlap with cosmid SPBC18E5 and cosmid SPBC23G7" ;
chromosome2 GeneDB 3'-UTR 2094278 2094336 . + . mRNA SPBC18E5.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.10" ; systematic_id "SPBC18E5.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2094393 2095848 . - . mRNA SPBC18E5.11c ; systematic_id "SPBC18E5.11c" ; colour "7" ; gene "edc3 ||| SPBC18E5.11c ||| SPBC23G7.01c" ; Alias "edc3" ; db_xref "SPD:23/23E02" ; synonym "SPBC23G7.01c" ; GO "GO:0031087; deadenylation-independent decapping
GO:0000932; cytoplasmic mRNA processing body" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "edc3" ; product "enhancer of mRNA decapping Edc3 (predicted)" ;
chromosome2 GeneDB CDS 2094393 2095403 . - . mRNA SPBC18E5.11c ; colour "7" ;
chromosome2 GeneDB CDS 2095495 2095848 . - . mRNA SPBC18E5.11c ; colour "7" ;
chromosome2 GeneDB misc_feature 2095404 2095419 . - . misc_feature unknown_1615 ; colour "6" ; note "ctaattgagttatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2095489 2095494 . - . misc_feature unknown_1616 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2095847 2095934 . - . mRNA SPBC18E5.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.11c" ; systematic_id "SPBC18E5.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2096190 2096847 . + . misc_RNA SPNCRNA.536 ; db_xref "PMID:18488015" ; synonym "SPNGAF104" ; systematic_id "SPNCRNA.536" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB 3'-UTR 2096430 2096527 . - . mRNA SPBC18E5.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.12c" ; systematic_id "SPBC18E5.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2096528 2098012 . - . mRNA SPBC18E5.12c ; systematic_id "SPBC18E5.12c" ; colour "7" ; gene "SPBC18E5.12c ||| SPBC23G7.02c ||| mas2" ; Alias "mas2" ; db_xref "SPD:23/23H12" ; synonym "SPBC23G7.02c" ; GO "GO:0017087; mitochondrial processing peptidase complex
GO:0004222; metalloendopeptidase activity
GO:0006627; mitochondrial protein processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "mas2" ; product "mitochondrial processing peptidase(MPP) complex alpha subunit Mas2 (predicted)" ; EC_number "3.4.24.64" ;
chromosome2 GeneDB CDS 2096528 2098012 . - . mRNA SPBC18E5.12c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2098011 2098028 . - . mRNA SPBC18E5.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.12c" ; systematic_id "SPBC18E5.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2098791 2098956 . + . mRNA SPBC18E5.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.13" ; systematic_id "SPBC18E5.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2098957 2099658 . + . mRNA SPBC18E5.13 ; systematic_id "SPBC18E5.13" ; colour "7" ; gene "SPBC18E5.13 ||| SPBC23G7.03" ; db_xref "SPD:08/08C04" ; synonym "SPBC23G7.03" ; GO "GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "mitochondrial translation initiation factor (predicted)" ;
chromosome2 GeneDB CDS 2098957 2099658 . + . mRNA SPBC18E5.13 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2099659 2099732 . + . mRNA SPBC18E5.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18E5.13" ; systematic_id "SPBC18E5.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2100167 2100272 . + . mRNA SPBC23G7.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.16" ; systematic_id "SPBC23G7.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2100273 2101061 . + . mRNA SPBC23G7.16 ; systematic_id "SPBC23G7.16" ; colour "2" ; gene "ctr6 ||| SPBC23G7.16" ; Alias "ctr6" ; db_xref "SPD:09/09H10" ; GO "GO:0000329; vacuolar membrane
GO:0005375; copper ion transporter activity
GO:0035434; copper ion transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression induced by copper limitation; db_xref=PMID:12244050; date=19700101 ||| term=gene expression, transcriptionally regulated by Cuf1; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YHR175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ctr6" ; product "vacuolar copper transporter Ctr6" ;
chromosome2 GeneDB CDS 2100273 2100317 . + . mRNA SPBC23G7.16 ; colour "2" ;
chromosome2 GeneDB CDS 2100387 2100412 . + . mRNA SPBC23G7.16 ; colour "2" ;
chromosome2 GeneDB CDS 2100520 2100780 . + . mRNA SPBC23G7.16 ; colour "2" ;
chromosome2 GeneDB CDS 2100875 2100896 . + . mRNA SPBC23G7.16 ; colour "2" ;
chromosome2 GeneDB CDS 2100969 2101061 . + . mRNA SPBC23G7.16 ; colour "2" ;
chromosome2 GeneDB misc_feature 2100318 2100323 . + . misc_feature unknown_1617 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2100374 2100386 . + . misc_feature unknown_1618 ; colour "6" ; note "ttaacatgcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2100413 2100418 . + . misc_feature unknown_1619 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2100508 2100519 . + . misc_feature unknown_1620 ; colour "6" ; note "ctaaccttgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2100781 2100786 . + . misc_feature unknown_1621 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2100857 2100874 . + . misc_feature unknown_1622 ; colour "6" ; note "ctaactaaagtgacttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2100956 2100968 . + . misc_feature unknown_1623 ; colour "6" ; note "cttacttatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2101062 2101158 . + . mRNA SPBC23G7.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.16" ; systematic_id "SPBC23G7.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2101269 2101445 . - . mRNA SPBC23G7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.04c" ; systematic_id "SPBC23G7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2101446 2103491 . - . mRNA SPBC23G7.04c ; systematic_id "SPBC23G7.04c" ; colour "2" ; gene "nif1 ||| SPBC23G7.04c" ; note "ortholog data pers. comm. Maria Novatchkova" ; Alias "nif1" ; db_xref "SPD:33/33F08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SEL1 repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR007C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:9135149; date=20101124" ; GO "GO:0010972; negative regulation of G2/M transition mitotic cell cycle" ; primary_name "nif1" ; product "SEL1 repeat protein Nif1" ;
chromosome2 GeneDB CDS 2101446 2103491 . - . mRNA SPBC23G7.04c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2103490 2103798 . - . mRNA SPBC23G7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.04c" ; systematic_id "SPBC23G7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2104179 2105331 . + . misc_RNA SPNCRNA.387 ; db_xref "PMID:18488015" ; synonym "SPNG1573-75" ; systematic_id "SPNCRNA.387" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 2105562 2105625 . + . mRNA SPBC23G7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.05" ; systematic_id "SPBC23G7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2105626 2106170 . + . mRNA SPBC23G7.05 ; systematic_id "SPBC23G7.05" ; colour "2" ; gene "sui1 ||| psu1 ||| SPBC23G7.05" ; Alias "sui1" ; db_xref "SPD:39/39H09" ; synonym "psu1" ; GO "GO:0006413; translational initiation
GO:0003743; translation initiation factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL244C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sui1" ; product "translation initiation factor eIF1" ;
chromosome2 GeneDB CDS 2105626 2105656 . + . mRNA SPBC23G7.05 ; colour "2" ;
chromosome2 GeneDB CDS 2105872 2106170 . + . mRNA SPBC23G7.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 2105657 2105662 . + . misc_feature unknown_1624 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 2105657 2105871 . + . intron SPBC23G7.05 ; systematic_id "SPBC23G7.05" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2105853 2105871 . + . misc_feature unknown_1625 ; colour "6" ; note "ctaaactaacatgtgttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2106171 2106220 . + . mRNA SPBC23G7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.05" ; systematic_id "SPBC23G7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2106331 2106447 . - . mRNA SPBC23G7.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.06c" ; systematic_id "SPBC23G7.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2106448 2108786 . - . mRNA SPBC23G7.06c ; db_xref "SPD:28/28D07" ; systematic_id "SPBC23G7.06c" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR091C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=pleckstrin homology domain; qualifier=inferred from context; date=19700101 ||| term=human TEX2 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202" ; gene "SPBC23G7.06c" ; product "conserved eukaryotic protein" ;
chromosome2 GeneDB CDS 2106448 2108178 . - . mRNA SPBC23G7.06c ; colour "10" ;
chromosome2 GeneDB CDS 2108181 2108786 . - . mRNA SPBC23G7.06c ; colour "10" ;
chromosome2 GeneDB misc_feature 2108255 2108266 . - . misc_feature unknown_1626 ; colour "6" ; note "ctcacaaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2108350 2108355 . - . misc_feature unknown_1627 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2108785 2108971 . - . mRNA SPBC23G7.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.06c" ; systematic_id "SPBC23G7.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2109356 2109408 . - . mRNA SPBC23G7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.07c" ; systematic_id "SPBC23G7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2109409 2110357 . - . mRNA SPBC23G7.07c ; db_xref "SPD:13/13D01" ; systematic_id "SPBC23G7.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005634; nucleus
GO:0042274; ribosomal small subunit ribogenesis
GO:0030686; 90S preribosome" ; gene "SPBC23G7.07c" ; product "U3-containing 90S preribosome complex subunit (predicted)" ;
chromosome2 GeneDB CDS 2109409 2109584 . - . mRNA SPBC23G7.07c ; colour "7" ;
chromosome2 GeneDB CDS 2109644 2109958 . - . mRNA SPBC23G7.07c ; colour "7" ;
chromosome2 GeneDB CDS 2110015 2110357 . - . mRNA SPBC23G7.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 2109585 2109597 . - . misc_feature unknown_1628 ; colour "6" ; note "ctaacatttttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2109585 2109643 . - . intron SPBC23G7.07c ; systematic_id "SPBC23G7.07c" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 2109638 2109643 . - . misc_feature unknown_1629 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2109959 2109973 . - . misc_feature unknown_1630 ; colour "6" ; note "ctaactcactataag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2109959 2110014 . - . intron SPBC23G7.07c ; systematic_id "SPBC23G7.07c" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 2110009 2110014 . - . misc_feature unknown_1631 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2110356 2110397 . - . mRNA SPBC23G7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.07c" ; systematic_id "SPBC23G7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2110568 2110806 . - . mRNA SPBC23G7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.08c" ; systematic_id "SPBC23G7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2110807 2112894 . - . mRNA SPBC23G7.08c ; systematic_id "SPBC23G7.08c" ; colour "2" ; gene "rga7 ||| SPBC23G7.08c" ; Alias "rga7" ; db_xref "SPD:27/27G09" ; GO "GO:0030479; actin cortical patch
GO:0005100; Rho GTPase activator activity
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0032319; regulation of Rho GTPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR260C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rga7" ; product "Rho-type GTPase activating protein Rga7" ;
chromosome2 GeneDB CDS 2110807 2112894 . - . mRNA SPBC23G7.08c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2112893 2113037 . - . mRNA SPBC23G7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.08c" ; systematic_id "SPBC23G7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2114219 2114347 . - . mRNA SPBC23G7.17c ; Alias "mat3-m" ; systematic_id "SPBC23G7.17c" ; synonym "matmi ||| mat1 ||| matmi_2" ; colour "2" ; controlled_curation "term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=mating-type m-specific polypeptide mi; date=20090429" ; gene "matmi_2 ||| matmi ||| mat1 ||| SPBC23G7.17c" ; primary_name "mat3-m" ; product "mating-type M-specific polypeptide Mi 2" ;
chromosome2 GeneDB CDS 2114219 2114347 . - . mRNA SPBC23G7.17c ; colour "2" ;
chromosome2 GeneDB CDS_parts 2114482 2115027 . + . mRNA SPBC23G7.09 ; Alias "matmc_2" ; systematic_id "SPBC23G7.09" ; synonym "matmc" ; colour "2" ; controlled_curation "term=mating-type m-specific polypeptide matmc; date=20090429 ||| term=species distribution, conserved in Fungi; date=20090429 ||| term=species distribution, conserved in Fungi only; date=20090429 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090429 ||| term=similar to S. pombe SPBC1711.02 (identical); date=19700101 ||| term=HMG box; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0007531; mating type determination" ; gene "matmc_2 ||| matmc ||| SPBC23G7.09" ; primary_name "matmc_2" ; product "mating-type m-specific polypeptide mc 2" ;
chromosome2 GeneDB CDS 2114482 2115027 . + . mRNA SPBC23G7.09 ; colour "2" ;
chromosome2 GeneDB misc_RNA 2115667 2117167 . + . misc_RNA SPNCRNA.388 ; db_xref "PMID:18488015" ; synonym "SPNG1578" ; systematic_id "SPNCRNA.388" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_feature 2116752 2118450 . + . misc_feature unknown_1632 ; note "8495 (+1) 1 1699 SPARS756 X07890 Yeast ARS element ( pARS756)" ;
chromosome2 GeneDB CDS_parts 2118267 2119454 . - . mRNA SPBC23G7.10c ; db_xref "SPD:18/18H10" ; systematic_id "SPBC23G7.10c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; gene "SPBC23G7.10c" ; product "NADH-dependent flavin oxidoreductase (predicted)" ;
chromosome2 GeneDB CDS 2118267 2119454 . - . mRNA SPBC23G7.10c ; colour "7" ;
chromosome2 GeneDB CDS_parts 2120286 2120927 . + . mRNA SPBC23G7.11 ; systematic_id "SPBC23G7.11" ; colour "2" ; gene "SPBC23G7.11 ||| mag2" ; Alias "mag2" ; db_xref "SPD:07/07D02" ; GO "GO:0003905; alkylbase DNA N-glycosylase activity
GO:0006307; DNA dealkylation involved in DNA repair
GO:0005634; nucleus
GO:0006285; base-excision repair, AP site formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER142C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "mag2" ; product "DNA-3-methyladenine glycosidase Mag2" ; EC_number "3.2.2.21" ;
chromosome2 GeneDB CDS 2120286 2120927 . + . mRNA SPBC23G7.11 ; colour "2" ;
chromosome2 GeneDB snoRNA 2121215 2121358 . + . snoRNA SPSNORNA.44 ; Alias "snR92" ; db_xref "EMBL:AJ632010 ||| PMID:15716270" ; systematic_id "SPSNORNA.44" ; gene "SPSNORNA.44" ; primary_name "snR92" ; product "small nucleolar RNA snR92" ;
chromosome2 GeneDB 3'-UTR 2121511 2121529 . - . mRNA SPBC23G7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.12c" ; systematic_id "SPBC23G7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2121530 2122783 . - . mRNA SPBC23G7.12c ; systematic_id "SPBC23G7.12c" ; colour "7" ; gene "rpt6 ||| let1 ||| SPBC23G7.12c" ; Alias "rpt6" ; db_xref "SPD:32/32G02" ; synonym "let1" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0004175; endopeptidase activity
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YGL048C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpt6" ; product "19S proteasome regulatory subunit Rpt6 (predicted)" ;
chromosome2 GeneDB CDS 2121530 2122687 . - . mRNA SPBC23G7.12c ; colour "7" ;
chromosome2 GeneDB CDS 2122730 2122783 . - . mRNA SPBC23G7.12c ; colour "7" ;
chromosome2 GeneDB misc_feature 2122688 2122702 . - . misc_feature unknown_1633 ; colour "6" ; note "ttaacataaaatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2122724 2122729 . - . misc_feature unknown_1634 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2122782 2122826 . - . mRNA SPBC23G7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.12c" ; systematic_id "SPBC23G7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2123260 2125254 . - . mRNA SPBC23G7.13c ; db_xref "SPD:27/27D03" ; systematic_id "SPBC23G7.13c" ; colour "7" ; GO "GO:0015204; urea transmembrane transporter activity
GO:0071918; urea transmembrane transport
GO:0005886; plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL016C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC23G7.13c" ; product "urea transporter (predicted)" ;
chromosome2 GeneDB CDS 2123260 2125254 . - . mRNA SPBC23G7.13c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2126512 2126632 . + . mRNA SPBC23G7.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.14" ; systematic_id "SPBC23G7.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2126633 2127028 . + . mRNA SPBC23G7.14 ; db_xref "SPD:03/03A02" ; systematic_id "SPBC23G7.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC23G7.14" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2126633 2127028 . + . mRNA SPBC23G7.14 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 2127029 2127947 . + . mRNA SPBC23G7.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.14" ; systematic_id "SPBC23G7.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2128032 2128410 . - . mRNA SPBC23G7.15c ; systematic_id "SPBC23G7.15c" ; colour "2" ; gene "rpp202 ||| rpp2-2 ||| SPBC23G7.15c" ; Alias "rpp202" ; db_xref "SPD:39/39G08" ; synonym "rpp2-2" ; GO "GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006414; translational elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL039W and YDR382W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpp202" ; product "60S acidic ribosomal protein P2B subunit" ;
chromosome2 GeneDB CDS 2128032 2128055 . - . mRNA SPBC23G7.15c ; colour "2" ;
chromosome2 GeneDB CDS 2128102 2128410 . - . mRNA SPBC23G7.15c ; colour "2" ;
chromosome2 GeneDB misc_feature 2128056 2128068 . - . misc_feature unknown_1635 ; colour "6" ; note "ctaactaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2128087 2128092 . - . misc_feature unknown_1636 ; colour "6" ; note "atatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2128409 2128440 . - . mRNA SPBC23G7.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23G7.15c" ; systematic_id "SPBC23G7.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2129208 2129910 . + . misc_feature unknown_1637 ; note "duplaicated region flanking matmc S. pombe chromosome 2" ;
chromosome2 GeneDB misc_RNA 2129803 2130589 . + . misc_RNA SPNCRNA.389 ; db_xref "PMID:18488015" ; synonym "SPNG1586" ; systematic_id "SPNCRNA.389" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, corresponds to duplicated region flanking mating-type region; cv=genome_org; date=20071119" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_feature 2129814 2129910 . + . misc_feature unknown_1638 ; note "nominal overlap with SPBC702 and cosmid SPBC23G7" ;
chromosome2 GeneDB misc_feature 2129814 2131116 . - . misc_feature unknown_1639 ; note "duplicated region; flanking matmc" ;
chromosome2 GeneDB misc_feature 2130996 2131116 . - . misc_feature unknown_1640 ; note "nominal overlap with cosmid c702" ;
chromosome2 GeneDB misc_feature 2130996 2131116 . + . misc_feature unknown_1641 ; note "nominal overlap with SPBC1711 S. pombe chromosome 2" ;
chromosome2 GeneDB repeat_region 2130996 2131327 . + . repeat_region unknown_1642 ; note "duplicated region flanking matmc" ;
chromosome2 GeneDB repeat_region 2132467 2133789 . + . repeat_region unknown_1643 ; note "similar to region of SPBC23G7 S. pombe chromosome 2" ;
chromosome2 GeneDB CDS_parts 2132586 2132714 . - . mRNA SPBC1711.01c ; systematic_id "SPBC1711.01c" ; colour "2" ; gene "matmi_1 ||| matmi ||| SPBC1711.01c" ; Alias "mat1-m" ; db_xref "SPD:31/31B12" ; synonym "matmi ||| matmi_1" ; GO "GO:0007531; mating type determination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=mating-type m-specific polypeptide mi; date=20090429" ; primary_name "mat1-m" ; product "mating-type m-specific polypeptide mi 1" ;
chromosome2 GeneDB CDS 2132586 2132714 . - . mRNA SPBC1711.01c ; colour "2" ;
chromosome2 GeneDB CDS_parts 2132849 2133394 . + . mRNA SPBC1711.02 ; systematic_id "SPBC1711.02" ; colour "2" ; gene "matmc_1 ||| matmc ||| SPBC1711.02" ; Alias "matmc_1" ; db_xref "SPD:05/05E10" ; synonym "matmc" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=similar to S. pombe SPBC23G7.09 (identical); date=19700101 ||| term=mating-type m-specific polypeptide matmc; date=20090429 ||| term=species distribution, conserved in Fungi; date=20090429 ||| term=species distribution, conserved in Fungi only; date=20090429 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090429 ||| term=DNA binding specificity, binds M-box 5'-ACAAT-3'; db_xref=PMID:9233981; cv=DNA_binding_specificity; date=20100304 ||| term=gene expression, transcriptionally regulates mfm1; db_xref=PMID:9233981; cv=gene_ex; date=20100304" ; GO "GO:0007531; mating type determination
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding" ; primary_name "matmc_1" ; product "mating-type m-specific polypeptide mc 1" ;
chromosome2 GeneDB CDS 2132849 2133394 . + . mRNA SPBC1711.02 ; colour "2" ;
chromosome2 GeneDB misc_RNA 2134981 2136530 . + . misc_RNA SPNCRNA.390 ; db_xref "PMID:18488015" ; synonym "SPNG1588" ; systematic_id "SPNCRNA.390" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, corresponds to duplicated region flanking mating-type region; cv=genome_org; date=20071119" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB repeat_region 2135002 2137121 . + . repeat_region unknown_1644 ; note "duplicated region flanking matmc SPBC1711 S. pombe chromosome 2" ;
chromosome2 GeneDB repeat_region 2136419 2137121 . + . repeat_region unknown_1645 ; note "region of similar to SPBC23G7 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_RNA 2137042 2137124 . + . misc_RNA SPNCRNA.391 ; db_xref "PMID:18488015" ; synonym "SPNG1589" ; systematic_id "SPNCRNA.391" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, corresponds to duplicated region flanking mating-type region; cv=genome_org; date=20071119" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 2138338 2138362 . + . mRNA SPBC1711.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.03" ; systematic_id "SPBC1711.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2138363 2139476 . + . mRNA SPBC1711.03 ; systematic_id "SPBC1711.03" ; colour "7" ; gene "SPBC1711.03 ||| aim27" ; Alias "aim27" ; db_xref "SPD:17/17E09" ; synonym "emc3" ; GO "GO:0034975; protein folding in the endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0072546; ER membrane protein complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL207W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=human TMEM111 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "aim27" ; product "ER membrane protein complex subunit Aim27 (predicted)" ;
chromosome2 GeneDB CDS 2138363 2138387 . + . mRNA SPBC1711.03 ; colour "7" ;
chromosome2 GeneDB CDS 2138427 2138553 . + . mRNA SPBC1711.03 ; colour "7" ;
chromosome2 GeneDB CDS 2138602 2138876 . + . mRNA SPBC1711.03 ; colour "7" ;
chromosome2 GeneDB CDS 2139082 2139243 . + . mRNA SPBC1711.03 ; colour "7" ;
chromosome2 GeneDB CDS 2139289 2139476 . + . mRNA SPBC1711.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 2138388 2138393 . + . misc_feature unknown_1646 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2138414 2138426 . + . misc_feature unknown_1647 ; colour "6" ; note "ttaacgtatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2138554 2138559 . + . misc_feature unknown_1648 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2138585 2138601 . + . misc_feature unknown_1649 ; colour "6" ; note "ctaacagcaatcttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2138877 2138882 . + . misc_feature unknown_1650 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2139069 2139081 . + . misc_feature unknown_1651 ; colour "6" ; note "ctaactatcaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2139244 2139249 . + . misc_feature unknown_1652 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2139275 2139288 . + . misc_feature unknown_1653 ; colour "6" ; note "ttaacattttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2139477 2139660 . + . mRNA SPBC1711.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.03" ; systematic_id "SPBC1711.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2139828 2139861 . + . mRNA SPBC1711.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.04" ; systematic_id "SPBC1711.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2139862 2140991 . + . mRNA SPBC1711.04 ; db_xref "SPD:17/17G06" ; systematic_id "SPBC1711.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR080W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005829; cytosol
GO:0004487; methylenetetrahydrofolate dehydrogenase (NAD+) activity
GO:0046656; folic acid biosynthetic process
GO:0009113; purine base biosynthetic process" ; gene "SPBC1711.04" ; product "methylenetetrahydrofolate reductase (predicted)" ; EC_number "1.5.1.15" ;
chromosome2 GeneDB CDS 2139862 2139901 . + . mRNA SPBC1711.04 ; colour "7" ;
chromosome2 GeneDB CDS 2140017 2140148 . + . mRNA SPBC1711.04 ; colour "7" ;
chromosome2 GeneDB CDS 2140201 2140991 . + . mRNA SPBC1711.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 2139902 2139907 . + . misc_feature unknown_1654 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2140000 2140016 . + . misc_feature unknown_1655 ; note "ttaattgaatttttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2140149 2140154 . + . misc_feature unknown_1656 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2140182 2140200 . + . misc_feature unknown_1657 ; colour "6" ; note "ctaatcatgaacaatttag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 2141252 2141267 . + . mRNA SPBC1711.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.05" ; systematic_id "SPBC1711.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2141268 2142623 . + . mRNA SPBC1711.05 ; systematic_id "SPBC1711.05" ; colour "7" ; gene "SPBC1711.05" ; note "repeat region consensus DSESESSSEDSDSSSSSS ~7 copies?" ; db_xref "SPD:21/21A08" ; GO "GO:0005730; nucleolus
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100208" ; product "nucleocytoplasmic transport chaperone Srp40 (predicted)" ;
chromosome2 GeneDB CDS 2141268 2142623 . + . mRNA SPBC1711.05 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2142624 2142836 . + . mRNA SPBC1711.05 ; ID "SPBC1711.05" ; systematic_id "SPBC1711.05" ; note "mRNA from AU012484" ;
chromosome2 GeneDB 5'-UTR 2143124 2143136 . + . mRNA SPBC1711.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.06" ; systematic_id "SPBC1711.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2143137 2144228 . + . mRNA SPBC1711.06 ; systematic_id "SPBC1711.06" ; colour "7" ; gene "rpl401 ||| rpl4-1 ||| rpl4 ||| SPBC1711.06" ; Alias "rpl401" ; obsolete_name "rpl402 ||| rpl4-2" ; db_xref "SPD:32/32E03" ; synonym "rpl4-1 ||| rpl4" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, acetylated; cv=pt_mod; qualifier=predicted; date=20060518 ||| term=orthologous to S. cerevisiae YBR031W and YDR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; GO "GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation" ; primary_name "rpl401" ; product "60S ribosomal protein L2 (predicted)" ;
chromosome2 GeneDB CDS 2143137 2144228 . + . mRNA SPBC1711.06 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2145027 2145038 . + . mRNA SPBC1711.18 ; db_xref "PMID:21270388" ; systematic_id "SPBC1711.18" ;
chromosome2 GeneDB CDS_parts 2145039 2145299 . + . mRNA SPBC1711.18 ; Alias "tam9" ; systematic_id "SPBC1711.18" ; GO "GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=orthologous to S. cerevisiae YBR122C; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "7" ; primary_name "tam9" ; gene "SPBC1711.18" ; product "mitochondrial ribosomal protein subunit L36, MrpL36/YmL36" ;
chromosome2 GeneDB CDS 2145039 2145299 . + . mRNA SPBC1711.18 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2145300 2145555 . + . mRNA SPBC1711.18 ; db_xref "PMID:21270388" ; systematic_id "SPBC1711.18" ;
chromosome2 GeneDB 5'-UTR 2145592 2146255 . + . mRNA SPBC1711.07 ; ID "SPBC1711.07" ; systematic_id "SPBC1711.07" ; note "mRNA from AU013066" ;
chromosome2 GeneDB misc_RNA 2145712 2145812 . - . misc_RNA SPNCRNA.514 ; systematic_id "SPNCRNA.514" ; controlled_curation "term=warning, new gene; db_xref=PMID:18641648; date=20100426" ; product "non-coding RNA (predicted)" ; note "transfrag T" ;
chromosome2 GeneDB CDS_parts 2146256 2147698 . + . mRNA SPBC1711.07 ; db_xref "SPD:44/44F08" ; systematic_id "SPBC1711.07" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR131C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC1711.07" ; product "WD repeat protein Rrb1 (predicted)" ;
chromosome2 GeneDB CDS 2146256 2147698 . + . mRNA SPBC1711.07 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2147699 2147814 . + . mRNA SPBC1711.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.07" ; systematic_id "SPBC1711.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2149069 2149124 . + . mRNA SPBC1711.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.08" ; systematic_id "SPBC1711.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2149125 2150510 . + . mRNA SPBC1711.08 ; db_xref "SPD:21/21D12" ; systematic_id "SPBC1711.08" ; colour "7" ; GO "GO:0006457; protein folding
GO:0033554; cellular response to stress
GO:0005737; cytoplasm
GO:0031072; heat shock protein binding
GO:0001671; ATPase activator activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR214W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1711.08" ; product "chaperone activator Aha1 (predicted)" ;
chromosome2 GeneDB CDS 2149125 2149156 . + . mRNA SPBC1711.08 ; colour "7" ;
chromosome2 GeneDB CDS 2149532 2150510 . + . mRNA SPBC1711.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 2149157 2149162 . + . misc_feature unknown_1658 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 2149157 2149531 . + . intron SPBC1711.08 ; systematic_id "SPBC1711.08" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2149517 2149531 . + . misc_feature unknown_1659 ; colour "6" ; note "ctaactcaattttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2150511 2150801 . + . mRNA SPBC1711.08 ; ID "SPBC1711.08" ; systematic_id "SPBC1711.08" ; note "mRNA from AU008586" ;
chromosome2 GeneDB 3'-UTR 2150885 2150959 . - . mRNA SPBC1711.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.09c" ; systematic_id "SPBC1711.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2150960 2151838 . - . mRNA SPBC1711.09c ; db_xref "SPD:11/11H07" ; systematic_id "SPBC1711.09c" ; colour "7" ; GO "GO:0030173; integral to Golgi membrane
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR088C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1711.09c" ; product "SNARE associated Golgi protein (predicted)" ;
chromosome2 GeneDB CDS 2150960 2151760 . - . mRNA SPBC1711.09c ; colour "7" ;
chromosome2 GeneDB CDS 2151827 2151838 . - . mRNA SPBC1711.09c ; colour "7" ;
chromosome2 GeneDB misc_feature 2151761 2151775 . - . misc_feature unknown_1660 ; colour "6" ; note "ctaatcttgaactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2151821 2151826 . - . misc_feature unknown_1661 ; colour "6" ; note "gtatct, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2151837 2151927 . - . mRNA SPBC1711.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.09c" ; systematic_id "SPBC1711.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2152147 2152461 . - . mRNA SPBC1711.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.10c" ; systematic_id "SPBC1711.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2152462 2154335 . - . mRNA SPBC1711.10c ; systematic_id "SPBC1711.10c" ; colour "7" ; gene "npl4 ||| SPBC1711.10c" ; Alias "npl4" ; db_xref "SPD:45/45G03" ; GO "GO:0030433; ER-associated protein catabolism
GO:0005783; endoplasmic reticulum
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0034098; Cdc48p-Npl4p-Ufd1p AAA ATPase complex
GO:0042175; nuclear envelope-endoplasmic reticulum network" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR170C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "npl4" ; product "Cdc48-Npl4-Ufd1 complex component Npl4 (predicted)" ;
chromosome2 GeneDB CDS 2152462 2152575 . - . mRNA SPBC1711.10c ; colour "7" ;
chromosome2 GeneDB CDS 2152627 2154144 . - . mRNA SPBC1711.10c ; colour "7" ;
chromosome2 GeneDB CDS 2154207 2154287 . - . mRNA SPBC1711.10c ; colour "7" ;
chromosome2 GeneDB CDS 2154333 2154335 . - . mRNA SPBC1711.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 2154145 2154156 . - . misc_feature unknown_1662 ; colour "6" ; note "ctaacaaatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2154201 2154206 . - . misc_feature unknown_1663 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2154288 2154301 . - . misc_feature unknown_1664 ; colour "6" ; note "ctaacagtttaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2154327 2154332 . - . misc_feature unknown_1665 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 2155273 2156445 . + . mRNA SPBC1711.11 ; db_xref "SPD:43/43H09" ; systematic_id "SPBC1711.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YJL036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006623; protein targeting to vacuole
GO:0005737; cytoplasm
GO:0000407; pre-autophagosomal structure
GO:0005776; autophagic vacuole
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0032258; CVT pathway
GO:0034498; early endosome to Golgi transport
GO:0034727; piecemeal autophagy of nucleus" ; product "autophagy associated protein (predicted)" ;
chromosome2 GeneDB CDS 2155273 2156445 . + . mRNA SPBC1711.11 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2157590 2157624 . + . mRNA SPBC1711.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.12" ; systematic_id "SPBC1711.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2157625 2159676 . + . mRNA SPBC1711.12 ; db_xref "SPD:46/46D08" ; systematic_id "SPBC1711.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=human APEH ortholog; qualifier=predicted; date=20100906" ; colour "7" ; gene "SPBC1711.12" ; product "oxidised protein hydrolase (predicted)" ;
chromosome2 GeneDB CDS 2157625 2159676 . + . mRNA SPBC1711.12 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2159843 2159916 . + . mRNA SPBC1711.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.13" ; systematic_id "SPBC1711.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2159917 2161236 . + . mRNA SPBC1711.13 ; systematic_id "SPBC1711.13" ; colour "2" ; gene "his2 ||| SPBC1711.13" ; note "similarity to YCL030C is at the C-term, S. pombe his7 is similar to YCl030C at the N-term" ; Alias "his2" ; db_xref "SPD:32/32H01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL030C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000105; histidine biosynthesis
GO:0004399; histidinol dehydrogenase activity
GO:0004399; histidinol dehydrogenase activity" ; primary_name "his2" ; product "histidinol dehydrogenase His2 (predicted)" ; EC_number "1.1.1.23" ;
chromosome2 GeneDB CDS 2159917 2161236 . + . mRNA SPBC1711.13 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2161237 2161291 . + . mRNA SPBC1711.13 ; ID "SPBC1711.13" ; systematic_id "SPBC1711.13" ; note "mRNA from AU010049" ;
chromosome2 GeneDB CDS_parts 2161542 2162133 . + . mRNA SPBC1711.14 ; systematic_id "SPBC1711.14" ; colour "2" ; gene "rec15 ||| SPBC1711.14" ; Alias "rec15" ; db_xref "SPD:31/31F03" ; GO "GO:0007131; meiotic recombination
GO:0045143; homologous chromosome segregation
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "rec15" ; product "meiotic recombination protein Rec15" ;
chromosome2 GeneDB CDS 2161542 2161746 . + . mRNA SPBC1711.14 ; colour "2" ;
chromosome2 GeneDB CDS 2161796 2162133 . + . mRNA SPBC1711.14 ; colour "2" ;
chromosome2 GeneDB misc_feature 2161747 2161752 . + . misc_feature unknown_1666 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2161784 2161795 . + . misc_feature unknown_1667 ; colour "6" ; note "ctgacttaatag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2162113 2162211 . - . mRNA SPBC1711.15c ; db_xref "SPD:01/01A01" ; systematic_id "SPBC1711.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20091213" ; colour "8" ; gene "SPBC1711.15c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2162113 2162211 . - . mRNA SPBC1711.15c ; colour "8" ;
chromosome2 GeneDB intron 2162257 2162485 . - . intron unknown_1668 ; note "confirmed intron" ;
chromosome2 GeneDB misc_RNA 2162782 2163089 . + . misc_RNA SPNCRNA.392 ; db_xref "PMID:18488015" ; synonym "SPNG1591" ; systematic_id "SPNCRNA.392" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB LTR 2163463 2163810 . + . LTR unknown_1669 ; note "Tf2-type LTR" ;
chromosome2 GeneDB 5'-UTR 2164136 2164277 . + . mRNA SPBC1711.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.16" ; systematic_id "SPBC1711.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2164278 2165828 . + . mRNA SPBC1711.16 ; db_xref "SPD:25/25B06" ; systematic_id "SPBC1711.16" ; colour "7" ; GO "GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR196W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC1711.16" ; product "WD repeat protein (predicted)" ;
chromosome2 GeneDB CDS 2164278 2165828 . + . mRNA SPBC1711.16 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2165829 2165996 . + . mRNA SPBC1711.16 ; ID "SPBC1711.16" ; systematic_id "SPBC1711.16" ; note "mRNA from AU009880" ;
chromosome2 GeneDB 5'-UTR 2166226 2166258 . + . mRNA SPBC1711.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.17" ; systematic_id "SPBC1711.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2166259 2169780 . + . mRNA SPBC1711.17 ; systematic_id "SPBC1711.17" ; colour "7" ; gene "prp16 ||| SPBC1711.17 ||| SPBC17G9.01" ; Alias "prp16" ; db_xref "SPD:48/48D04" ; synonym "SPBC17G9.01" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005681; spliceosome complex
GO:0000350; generation of catalytic spliceosome for second transesterification step
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp16" ; product "ATP-dependent RNA helicase Prp16 (predicted)" ;
chromosome2 GeneDB CDS 2166259 2169780 . + . mRNA SPBC1711.17 ; colour "7" ;
chromosome2 GeneDB misc_feature 2166793 2168995 . + . misc_feature unknown_1670 ; note "nominal overlap with cosmid c17G9" ;
chromosome2 GeneDB misc_feature 2166793 2168995 . - . misc_feature unknown_1671 ; note "nominal overlap with cosmid SPBC1711 S. pombe chromosome 2;" ;
chromosome2 GeneDB 3'-UTR 2169781 2169858 . + . mRNA SPBC1711.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1711.17" ; systematic_id "SPBC1711.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2169967 2169990 . - . mRNA SPBC17G9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.02c" ; systematic_id "SPBC17G9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2169991 2171260 . - . mRNA SPBC17G9.02c ; db_xref "SPD:44/44B04" ; systematic_id "SPBC17G9.02c" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0016593; Cdc73/Paf1 complex
GO:0016944; RNA polymerase II transcription elongation factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR418C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human HRPT2 ortholog; date=20100217" ; gene "SPBC17G9.02c" ; product "RNA polymerase II accessory factor, Cdc73 family (predicted)" ;
chromosome2 GeneDB CDS 2169991 2170499 . - . mRNA SPBC17G9.02c ; colour "7" ;
chromosome2 GeneDB CDS 2170541 2170643 . - . mRNA SPBC17G9.02c ; colour "7" ;
chromosome2 GeneDB CDS 2170694 2170839 . - . mRNA SPBC17G9.02c ; colour "7" ;
chromosome2 GeneDB CDS 2170903 2171260 . - . mRNA SPBC17G9.02c ; colour "7" ;
chromosome2 GeneDB misc_feature 2170500 2170514 . - . misc_feature unknown_1672 ; colour "6" ; note "ctaatcaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2170535 2170540 . - . misc_feature unknown_1673 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2170644 2170657 . - . misc_feature unknown_1674 ; colour "6" ; note "ctaactttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2170688 2170693 . - . misc_feature unknown_1675 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2170840 2170859 . - . misc_feature unknown_1676 ; colour "6" ; note "ctaacattgtttatgagtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2170897 2170902 . - . misc_feature unknown_1677 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2171259 2171289 . - . mRNA SPBC17G9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.02c" ; systematic_id "SPBC17G9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2171670 2171856 . - . mRNA SPBC17G9.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.03c" ; systematic_id "SPBC17G9.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2171857 2173632 . - . mRNA SPBC17G9.03c ; systematic_id "SPBC17G9.03c" ; colour "7" ; gene "SPBC17G9.03c ||| krs1" ; Alias "krs1" ; db_xref "KEGG:MAP00300; ||| KEGG:MAP00970; ||| SPD:36/36C05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR037W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=OB fold; date=20091106" ; GO "GO:0005737; cytoplasm
GO:0004824; lysine-tRNA ligase activity
GO:0006430; lysyl-tRNA aminoacylation" ; primary_name "krs1" ; product "cytoplasmic lysine-tRNA ligase Krs1 (predicted)" ; EC_number "6.1.1.6" ;
chromosome2 GeneDB CDS 2171857 2173632 . - . mRNA SPBC17G9.03c ; colour "7" ;
chromosome2 GeneDB CDS_parts 2174101 2176128 . - . mRNA SPBC17G9.04c ; systematic_id "SPBC17G9.04c" ; colour "2" ; gene "nup85 ||| SPBC17G9.04c" ; Alias "nup85" ; db_xref "SPD:46/46C11" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0005643; nuclear pore
GO:0031080; Nup107-160 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YJR042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nup85" ; product "nucleoporin Nup85" ;
chromosome2 GeneDB CDS 2174101 2176128 . - . mRNA SPBC17G9.04c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2176127 2176400 . - . mRNA SPBC17G9.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.04c" ; systematic_id "SPBC17G9.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2177891 2178033 . + . mRNA SPBC17G9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.05" ; systematic_id "SPBC17G9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2178034 2179332 . + . mRNA SPBC17G9.05 ; systematic_id "SPBC17G9.05" ; colour "2" ; gene "cyp6 ||| SPBC17G9.05 ||| rct1" ; Alias "rct1" ; db_xref "SPD:22/22E11" ; synonym "cyp6" ; GO "GO:0000790; nuclear chromatin
GO:0003723; RNA binding
GO:0003755; peptidyl-prolyl cis-trans isomerase activity
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0008360; regulation of cell shape
GO:0070816; phosphorylation of RNA polymerase II C- terminal domain
GO:0006457; protein folding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17339332; date=20070807 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rct1" ; product "RRM-containing cyclophilin regulating transcription Rct1" ;
chromosome2 GeneDB CDS 2178034 2179332 . + . mRNA SPBC17G9.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2179333 2179370 . + . mRNA SPBC17G9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.05" ; systematic_id "SPBC17G9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2179370 2179487 . - . mRNA SPBC17G9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.06c" ; systematic_id "SPBC17G9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2179488 2180492 . - . mRNA SPBC17G9.06c ; db_xref "SPD:14/14G12" ; systematic_id "SPBC17G9.06c" ; GO "GO:0019290; siderophore biosynthetic process" ; controlled_curation "term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; colour "7" ; gene "SPBC17G9.06c" ; product "siderophore-iron biosynthesis protein (predicted)" ;
chromosome2 GeneDB CDS 2179488 2180492 . - . mRNA SPBC17G9.06c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2180491 2180693 . - . mRNA SPBC17G9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.06c" ; systematic_id "SPBC17G9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2180906 2180930 . + . mRNA SPBC17G9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.07" ; systematic_id "SPBC17G9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2180931 2181416 . + . mRNA SPBC17G9.07 ; systematic_id "SPBC17G9.07" ; colour "7" ; gene "rps2402 ||| rps24-2 ||| SPBC17G9.07" ; Alias "rps2402" ; db_xref "SPD:39/39H04" ; synonym "rps24-2" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER074W and YIL069C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps2402" ; product "40S ribosomal protein S24 (predicted)" ;
chromosome2 GeneDB CDS 2180931 2180999 . + . mRNA SPBC17G9.07 ; colour "7" ;
chromosome2 GeneDB CDS 2181081 2181416 . + . mRNA SPBC17G9.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 2181000 2181005 . + . misc_feature unknown_1678 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 2181000 2181080 . + . intron SPBC17G9.07 ; systematic_id "SPBC17G9.07" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2181064 2181080 . + . misc_feature unknown_1679 ; colour "6" ; note "ctaacggaaatttatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2181417 2181455 . + . mRNA SPBC17G9.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.07" ; systematic_id "SPBC17G9.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2181630 2181744 . - . mRNA SPBC17G9.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.08c" ; systematic_id "SPBC17G9.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2181745 2184676 . - . mRNA SPBC17G9.08c ; systematic_id "SPBC17G9.08c" ; colour "2" ; gene "cnt5 ||| csx2 ||| SPBC17G9.08c" ; Alias "cnt5" ; db_xref "SPD:38/38A02" ; synonym "csx2" ; GO "GO:0005096; GTPase activator activity
GO:0043087; regulation of GTPase activity
GO:0007264; small GTPase mediated signal transduction
GO:0071276; cellular response to cadmium ion
GO:0046685; cellular response to arsenic
GO:0005543; phospholipid binding
GO:0005886; plasma membrane
GO:0005829; cytosol" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=similar to S. pombe SPAC26A3.10; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sensitive to arsenic; qualifier=deletion; cv=phenotype; db_xref=PMID:19076239; date=20090108 ||| term=phenotype, sensitive to cadmium; qualifier=deletion; cv=phenotype; db_xref=PMID:19076239; date=20090108 ||| term=centaurin ADOP ribosylation factor GTPase activating protein family; db_xref=PMID:19076239; date=20090108 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cnt5" ; product "Centaurin 5" ;
chromosome2 GeneDB CDS 2181745 2182232 . - . mRNA SPBC17G9.08c ; colour "2" ;
chromosome2 GeneDB CDS 2182277 2183903 . - . mRNA SPBC17G9.08c ; colour "2" ;
chromosome2 GeneDB CDS 2183955 2184098 . - . mRNA SPBC17G9.08c ; colour "2" ;
chromosome2 GeneDB CDS 2184223 2184405 . - . mRNA SPBC17G9.08c ; colour "2" ;
chromosome2 GeneDB CDS 2184450 2184583 . - . mRNA SPBC17G9.08c ; colour "2" ;
chromosome2 GeneDB CDS 2184640 2184676 . - . mRNA SPBC17G9.08c ; colour "2" ;
chromosome2 GeneDB misc_feature 2182233 2182245 . - . misc_feature unknown_1680 ; colour "6" ; note "ctaacaagaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2182271 2182276 . - . misc_feature unknown_1681 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2183904 2183915 . - . misc_feature unknown_1682 ; colour "6" ; note "ctaaatatgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2183949 2183954 . - . misc_feature unknown_1683 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2184099 2184114 . - . misc_feature unknown_1684 ; colour "6" ; note "ctaacttttgattcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2184217 2184222 . - . misc_feature unknown_1685 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2184406 2184420 . - . misc_feature unknown_1686 ; colour "6" ; note "ctaacacatcttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2184444 2184449 . - . misc_feature unknown_1687 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2184584 2184598 . - . misc_feature unknown_1688 ; colour "6" ; note "ctaactctgctaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2184634 2184639 . - . misc_feature unknown_1689 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2184675 2184869 . - . mRNA SPBC17G9.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.08c" ; systematic_id "SPBC17G9.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2186474 2186908 . - . misc_RNA SPNCRNA.38 ; Alias "prl38" ; db_xref "EMBL:AB084850 ||| PMID:12597277" ; systematic_id "SPNCRNA.38" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl38" ; gene "prl38 ||| SPNCRNA.38" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB 5'-UTR 2187455 2187711 . + . mRNA SPBC17G9.09 ; ID "SPBC17G9.09" ; systematic_id "SPBC17G9.09" ; note "mRNA from SP37354" ;
chromosome2 GeneDB CDS_parts 2187712 2189052 . + . mRNA SPBC17G9.09 ; systematic_id "SPBC17G9.09" ; colour "7" ; gene "tif213 ||| SPBC17G9.09" ; db_xref "SPD:40/40D10" ; Alias "tif213" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER025W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tif213" ; product "translation initiation factor eIF2 gamma subunit (predicted)" ;
chromosome2 GeneDB CDS 2187712 2189052 . + . mRNA SPBC17G9.09 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2189053 2189134 . + . mRNA SPBC17G9.09 ; ID "SPBC17G9.09" ; systematic_id "SPBC17G9.09" ; note "mRNA from SP37354" ;
chromosome2 GeneDB 5'-UTR 2189708 2189724 . + . mRNA SPBC17G9.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.10" ; systematic_id "SPBC17G9.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2189725 2190249 . + . mRNA SPBC17G9.10 ; systematic_id "SPBC17G9.10" ; colour "7" ; gene "rpl1102 ||| rpl11-2 ||| SPBC17G9.10" ; Alias "rpl1102" ; db_xref "SPD:39/39H06" ; synonym "rpl11-2" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR102C and YGR085C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1102" ; product "60S ribosomal protein L11 (predicted)" ;
chromosome2 GeneDB CDS 2189725 2190249 . + . mRNA SPBC17G9.10 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2190250 2190257 . + . mRNA SPBC17G9.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.10" ; systematic_id "SPBC17G9.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2190645 2190873 . - . mRNA SPBC17G9.11c ; ID "SPBC17G9.11c" ; systematic_id "SPBC17G9.11c" ; note "mRNA from AU013709" ;
chromosome2 GeneDB CDS_parts 2190874 2194431 . - . mRNA SPBC17G9.11c ; systematic_id "SPBC17G9.11c" ; colour "2" ; db_xref "SPD:41/41A07" ; Alias "pyr1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, lactic acidosis; date=20060725 ||| term=orthologous to S. cerevisiae YGL062W and YBR218C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, biotinylated; attribution=pers. comm. J. Stolz; date=20100304" ; GO "GO:0004736; pyruvate carboxylase activity
GO:0006094; gluconeogenesis" ; primary_name "pyr1" ; product "pyruvate carboxylase Pyr1" ; EC_number "6.4.1.1" ;
chromosome2 GeneDB CDS 2190874 2194431 . - . mRNA SPBC17G9.11c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2194430 2194546 . - . mRNA SPBC17G9.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.11c" ; systematic_id "SPBC17G9.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2194994 2195199 . - . mRNA SPBC17G9.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.12c" ; systematic_id "SPBC17G9.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2195200 2196024 . - . mRNA SPBC17G9.12c ; db_xref "SPD:10/10F09" ; systematic_id "SPBC17G9.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR015C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC17G9.12c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 2195200 2196024 . - . mRNA SPBC17G9.12c ; colour "10" ;
chromosome2 GeneDB CDS_parts 2196584 2197537 . - . mRNA SPBC17G9.13c ; db_xref "SPD:13/13D12" ; systematic_id "SPBC17G9.13c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20090418 ||| term=species distribution, conserved in Fungi only; date=20090418 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090418" ; colour "10" ; gene "SPBC17G9.13c" ; product "conserved fungal mitochondrial protein" ;
chromosome2 GeneDB CDS 2196584 2197537 . - . mRNA SPBC17G9.13c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 2197536 2197681 . - . mRNA SPBC17G9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17G9.13c" ; systematic_id "SPBC17G9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2197754 2198140 . + . misc_RNA SPNCRNA.393 ; db_xref "PMID:18488015" ; synonym "SPNG1598" ; systematic_id "SPNCRNA.393" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 2198477 2199461 . + . misc_RNA SPNCRNA.394 ; db_xref "PMID:18488015" ; synonym "SPNG1599" ; systematic_id "SPNCRNA.394" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_feature 2199171 2199410 . - . misc_feature unknown_1690 ; note "nominal overlap with cosmid SPBC17G9, EM:AL109846 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2199171 2199410 . + . misc_feature unknown_1691 ; note "nominal overlap with cosmid SPBC1815, EM:AL050301 S. pombe chromosome 2" ;
chromosome2 GeneDB repeat_region 2199988 2200027 . + . repeat_region unknown_1692 ; note "(taacc)8" ;
chromosome2 GeneDB 5'-UTR 2201208 2201236 . + . mRNA SPBC1815.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1815.01" ; systematic_id "SPBC1815.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2201237 2202556 . + . mRNA SPBC1815.01 ; systematic_id "SPBC1815.01" ; colour "7" ; db_xref "SPD:32/32H02" ; Alias "eno101" ; synonym "eno1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR254W and YHR174W and YOR393W and YPL281C and YMR323W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101" ; GO "GO:0006096; glycolysis
GO:0004634; phosphopyruvate hydratase activity" ; primary_name "eno101" ; product "enolase (predicted)" ; EC_number "4.2.1.11" ;
chromosome2 GeneDB CDS 2201237 2202556 . + . mRNA SPBC1815.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2202557 2202631 . + . mRNA SPBC1815.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1815.01" ; systematic_id "SPBC1815.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2202687 2203315 . - . mRNA SPBC14C8.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.01c" ; systematic_id "SPBC14C8.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2203316 2204221 . - . mRNA SPBC14C8.01c ; systematic_id "SPBC14C8.01c" ; colour "2" ; gene "cut2 ||| SPBC1815.02c ||| SPBC14C8.01c" ; Alias "cut2" ; db_xref "SPD:40/40B04" ; synonym "SPBC1815.02c" ; GO "GO:0005634; nucleus
GO:0005819; spindle
GO:0030414; protease inhibitor activity
GO:0000077; DNA damage checkpoint
GO:0034613; cellular protein localization
GO:0006302; double-strand break repair
GO:0051306; mitotic sister chromatid segregation
GO:0033048; negative regulation of mitotic sister chromatid separation
GO:0007094; mitotic spindle checkpoint" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YDR113C; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:15126332; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15195092; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=target of APC complex; date=20091221" ; primary_name "cut2" ; product "securin, sister chromatid separation inhibitor" ;
chromosome2 GeneDB CDS 2203316 2204221 . - . mRNA SPBC14C8.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 2203561 2203849 . + . misc_feature unknown_1693 ; note "nominal overlap with cosmid SPBC1815 and SPBC14C8" ;
chromosome2 GeneDB misc_RNA 2204841 2205295 . - . misc_RNA SPNCRNA.68 ; Alias "prl68" ; db_xref "EMBL:AB084880 ||| PMID:12597277" ; systematic_id "SPNCRNA.68" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl68" ; gene "prl68 ||| SPNCRNA.68" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB 5'-UTR 2205500 2205553 . + . mRNA SPBC14C8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.02" ; systematic_id "SPBC14C8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2205554 2206837 . + . mRNA SPBC14C8.02 ; systematic_id "SPBC14C8.02" ; colour "7" ; gene "SPBC14C8.02 ||| tim44" ; Alias "tim44" ; db_xref "SPD:22/22C05" ; GO "GO:0015450; protein translocase activity
GO:0030150; protein import into mitochondrial matrix
GO:0001405; presequence translocase-associated import motor
GO:0005759; mitochondrial matrix" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tim44" ; product "TIM23 translocase complex subunit Tim44 (predicted)" ;
chromosome2 GeneDB CDS 2205554 2206837 . + . mRNA SPBC14C8.02 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2206838 2207373 . + . mRNA SPBC14C8.02 ; ID "SPBC14C8.02" ; systematic_id "SPBC14C8.02" ; note "mRNA from AU012425" ;
chromosome2 GeneDB 5'-UTR 2207697 2207731 . + . mRNA SPBC14C8.03 ; ID "SPBC14C8.03" ; systematic_id "SPBC14C8.03" ; note "mRNA from AU007316" ;
chromosome2 GeneDB CDS_parts 2207732 2209012 . + . mRNA SPBC14C8.03 ; systematic_id "SPBC14C8.03" ; colour "7" ; gene "fma2 ||| SPBC14C8.03" ; Alias "fma2" ; db_xref "SPD:20/20E05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human MetAP-2 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YBL091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004177; aminopeptidase activity
GO:0035551; protein initiator methionine removal involved in protein maturation
GO:0051604; protein maturation
GO:0006508; proteolysis" ; primary_name "fma2" ; product "methionine aminopeptidase Fma2 (predicted)" ; EC_number "3.4.11.18" ; reserved_name "fma2" ;
chromosome2 GeneDB CDS 2207732 2209012 . + . mRNA SPBC14C8.03 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2209013 2209340 . + . mRNA SPBC14C8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.03" ; systematic_id "SPBC14C8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2210136 2211596 . + . mRNA SPBC14C8.04 ; db_xref "SPD:23/23E09" ; systematic_id "SPBC14C8.04" ; colour "7" ; GO "GO:0030234; enzyme regulator activity
GO:0003984; acetolactate synthase activity
GO:0009097; isoleucine biosynthesis
GO:0009098; leucine biosynthesis
GO:0009099; valine biosynthesis
GO:0005739; mitochondrion
GO:0005948; acetolactate synthase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL009C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBC14C8.04" ; product "acetolactate synthase regulatory unit (predicted)" ;
chromosome2 GeneDB CDS 2210136 2210162 . + . mRNA SPBC14C8.04 ; colour "7" ;
chromosome2 GeneDB CDS 2210225 2210362 . + . mRNA SPBC14C8.04 ; colour "7" ;
chromosome2 GeneDB CDS 2210812 2211005 . + . mRNA SPBC14C8.04 ; colour "7" ;
chromosome2 GeneDB CDS 2211086 2211596 . + . mRNA SPBC14C8.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 2210163 2210168 . + . misc_feature unknown_1694 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2210203 2210224 . + . misc_feature unknown_1695 ; colour "6" ; note "ctaactaaacaaatcatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2210363 2210368 . + . misc_feature unknown_1696 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2210798 2210811 . + . misc_feature unknown_1697 ; colour "6" ; note "ctaacggttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2211006 2211011 . + . misc_feature unknown_1698 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2211071 2211085 . + . misc_feature unknown_1699 ; colour "6" ; note "ttaacatttttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2211597 2211761 . + . mRNA SPBC14C8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.04" ; systematic_id "SPBC14C8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2212020 2213372 . - . mRNA SPBC14C8.05c ; systematic_id "SPBC14C8.05c" ; colour "2" ; db_xref "SPD:21/21A04" ; Alias "meu17" ; GO "GO:0009986; cell surface
GO:0004339; glucan 1,4-alpha-glucosidase activity
GO:0030437; sporulation (sensu Fungi)
GO:0005980; glycogene catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during sporulation; cv=gene_ex; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL099W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "meu17" ; product "glucan-alpha-1,4-glucosidase" ; EC_number "3.2.1.3" ;
chromosome2 GeneDB CDS 2212020 2213372 . - . mRNA SPBC14C8.05c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2214396 2214437 . + . mRNA SPBC14C8.06 ; ID "SPBC14C8.06" ; systematic_id "SPBC14C8.06" ; note "mRNA from SPD122" ;
chromosome2 GeneDB CDS_parts 2214438 2215618 . + . mRNA SPBC14C8.06 ; systematic_id "SPBC14C8.06" ; colour "2" ; gene "arc1 ||| sop2 ||| SPBC14C8.06" ; Alias "arc1" ; db_xref "SPD:32/32F03" ; synonym "sop2" ; GO "GO:0005515; protein binding
GO:0033205; cell cycle cytokinesis
GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0000147; actin cortical patch assembly
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YBR234C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arc1" ; product "ARP2/3 actin-organizing complex subunit Sop2" ;
chromosome2 GeneDB CDS 2214438 2214510 . + . mRNA SPBC14C8.06 ; colour "2" ;
chromosome2 GeneDB CDS 2214558 2215618 . + . mRNA SPBC14C8.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 2214511 2214516 . + . misc_feature unknown_1700 ; colour "6" ; note "gtacag, splice donor sequence" ;
chromosome2 GeneDB intron 2214511 2214557 . + . intron SPBC14C8.06 ; systematic_id "SPBC14C8.06" ; note "confirmed intron: intron confirmed by ESTs" ;
chromosome2 GeneDB misc_feature 2214540 2214557 . + . misc_feature unknown_1701 ; colour "6" ; note "ttaacaaatttgatatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2215619 2215724 . + . mRNA SPBC14C8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.06" ; systematic_id "SPBC14C8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2215948 2216139 . - . mRNA SPBC14C8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.07c" ; systematic_id "SPBC14C8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2216140 2217873 . - . mRNA SPBC14C8.07c ; systematic_id "SPBC14C8.07c" ; colour "2" ; gene "cdc18 ||| SPBC14C8.07c" ; Alias "cdc18" ; db_xref "SPD:40/40F10" ; GO "GO:0005656; pre-replicative complex
GO:0043596; nuclear replication fork
GO:0005524; ATP binding
GO:0003689; DNA clamp loader activity
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0006267; pre-replicative complex formation and maintenance
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; qualifier=ts; db_xref=PMID:6943408; date=20100705 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=overexpression; date=20100730 ||| term=orthologous to S. cerevisiae YJL194W; date=19700101 ||| term=gene expression, expressed during G1-S phase; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; cv=gene_ex; date=19700101 ||| term=AAA family ATPase; qualifier=inferred from context; date=20081106 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cdc18" ; product "MCM loader" ;
chromosome2 GeneDB CDS 2216140 2217873 . - . mRNA SPBC14C8.07c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2217872 2217977 . - . mRNA SPBC14C8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.07c" ; systematic_id "SPBC14C8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2218181 2218539 . - . mRNA SPBC14C8.19 ; db_xref "PMID:21270388" ; systematic_id "SPBC14C8.19" ;
chromosome2 GeneDB CDS_parts 2218540 2219196 . - . mRNA SPBC14C8.19 ; Alias "tam10" ; systematic_id "SPBC14C8.19" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "tam10" ; gene "SPBC14C8.19" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2218540 2218826 . - . mRNA SPBC14C8.19 ; colour "8" ;
chromosome2 GeneDB CDS 2218874 2218935 . - . mRNA SPBC14C8.19 ; colour "8" ;
chromosome2 GeneDB CDS 2218993 2219047 . - . mRNA SPBC14C8.19 ; colour "8" ;
chromosome2 GeneDB CDS 2219094 2219196 . - . mRNA SPBC14C8.19 ; colour "8" ;
chromosome2 GeneDB 5'-UTR 2219197 2219221 . - . mRNA SPBC14C8.19 ; db_xref "PMID:21270388" ; systematic_id "SPBC14C8.19" ;
chromosome2 GeneDB CDS_parts 2219430 2220322 . - . mRNA SPBC14C8.09c ; systematic_id "SPBC14C8.09c" ; colour "7" ; gene "SPBC14C8.09c" ; db_xref "SPD:03/03F09" ; obsolete_name "SPBC14C8.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL177C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20090202 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090202 ||| term=warning, frameshifted; db_xref=PMID:16823372; cv=warning; date=20090202" ; GO "GO:0043555; regulation of translation in response to stress
GO:0045182; translation regulator activity
GO:0001932; regulation of protein amino acid phosphorylation" ; product "IMPACT domain protein, involved in translation (predicted)" ;
chromosome2 GeneDB CDS 2219430 2219934 . - . mRNA SPBC14C8.09c ; colour "7" ;
chromosome2 GeneDB CDS 2219937 2220322 . - . mRNA SPBC14C8.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2220730 2220762 . + . mRNA SPBC14C8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.10" ; systematic_id "SPBC14C8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2220763 2221293 . + . mRNA SPBC14C8.10 ; systematic_id "SPBC14C8.10" ; colour "7" ; gene "SPBC14C8.10 ||| mrpl24" ; Alias "mrpl24" ; db_xref "SPD:05/05D04" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR193W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl24" ; product "mitochondrial ribosomal protein subunit L28 (predicted)" ;
chromosome2 GeneDB CDS 2220763 2221293 . + . mRNA SPBC14C8.10 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2221294 2222266 . + . mRNA SPBC14C8.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.10" ; systematic_id "SPBC14C8.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2222212 2222212 . + . misc_feature unknown_1702 ; note "true extent of overlap with cosmid SPBC15C4" ;
chromosome2 GeneDB CDS_parts 2222650 2223060 . - . mRNA SPBC14C8.11c ; db_xref "SPD:03/03C02" ; systematic_id "SPBC14C8.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC14C8.11c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2222650 2223060 . - . mRNA SPBC14C8.11c ; colour "8" ;
chromosome2 GeneDB 5'-UTR 2223641 2223771 . + . mRNA SPBC14C8.12 ; Alias "rpb8" ; ID "SPBC14C8.12" ; systematic_id "SPBC14C8.12" ; primary_name "rpb8" ; note "mRNA from D86555" ;
chromosome2 GeneDB CDS_parts 2223772 2224256 . + . mRNA SPBC14C8.12 ; systematic_id "SPBC14C8.12" ; colour "2" ; gene "rpb8 ||| SPBC14C8.12" ; Alias "rpb8" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:31/31E02" ; GO "GO:0006360; transcription from RNA polymerase I promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0006383; transcription from RNA polymerase III promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0005736; DNA-directed RNA polymerase I complex
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0005666; DNA-directed RNA polymerase III complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR224C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpb8" ; product "DNA-directed RNA polymerase I, II and III subunit Rpb8" ;
chromosome2 GeneDB CDS 2223772 2223841 . + . mRNA SPBC14C8.12 ; colour "2" ;
chromosome2 GeneDB CDS 2223901 2224102 . + . mRNA SPBC14C8.12 ; colour "2" ;
chromosome2 GeneDB CDS 2224151 2224256 . + . mRNA SPBC14C8.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 2223842 2223847 . + . misc_feature unknown_1703 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB intron 2223842 2223900 . + . intron SPBC14C8.12 ; systematic_id "SPBC14C8.12" ; note "confirmed intron: intron confirmed by ESTs" ;
chromosome2 GeneDB misc_feature 2223887 2223900 . + . misc_feature unknown_1704 ; colour "6" ; note "ctaaccttacccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2224103 2224108 . + . misc_feature unknown_1705 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 2224103 2224150 . + . intron SPBC14C8.12 ; Alias "rpb8" ; db_xref "EMBL:Y07643" ; systematic_id "SPBC14C8.12" ; primary_name "rpb8" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 2224134 2224150 . + . misc_feature unknown_1706 ; colour "6" ; note "ttattaacctaattacaaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2224257 2224720 . + . mRNA SPBC14C8.12 ; Alias "rpb8" ; ID "SPBC14C8.12" ; systematic_id "SPBC14C8.12" ; primary_name "rpb8" ; note "mRNA from SPRPB8U3" ;
chromosome2 GeneDB 5'-UTR 2225299 2225387 . + . mRNA SPBC14C8.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.13" ; systematic_id "SPBC14C8.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2225388 2226143 . + . mRNA SPBC14C8.13 ; db_xref "SPD:43/43B06" ; systematic_id "SPBC14C8.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR412W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SRRD ortholog; date=20100727" ; colour "10" ; gene "SPBC14C8.13" ; product "SRR1 family protein" ;
chromosome2 GeneDB CDS 2225388 2226143 . + . mRNA SPBC14C8.13 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 2226005 2226039 . - . mRNA SPBC14C8.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.14c" ; systematic_id "SPBC14C8.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2226040 2228988 . - . mRNA SPBC14C8.14c ; systematic_id "SPBC14C8.14c" ; colour "2" ; gene "pol5 ||| SPBC14C8.14c" ; Alias "pol5" ; db_xref "SPD:47/47E11" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005515; protein binding
GO:0000182; rDNA binding
GO:0009303; rRNA transcription
GO:0042790; transcription of nuclear rRNA large RNA polymerase I transcript" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, constitutive; cv=gene_ex; db_xref=PMID:16816948; date=20070212 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16816948; date=20070212 ||| term=orthologous to S. cerevisiae YEL055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pol5" ; product "DNA polymerase phi" ;
chromosome2 GeneDB CDS 2226040 2228721 . - . mRNA SPBC14C8.14c ; colour "2" ;
chromosome2 GeneDB CDS 2228791 2228988 . - . mRNA SPBC14C8.14c ; colour "2" ;
chromosome2 GeneDB conflict 2226894 2226896 . + . conflict unknown_1707 ; colour "4" ; citation "[1]" ; note "single A residue discrepancy was removed in accordan ce with the sequence in the overlap with cosmid c15C4 which caused a frame-shift error in c14C8.14c, the original sequ ence in this region was CAAG" ;
chromosome2 GeneDB misc_feature 2228722 2228736 . - . misc_feature unknown_1708 ; colour "6" ; note "ctaaccaagaactag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2228722 2228790 . - . intron SPBC14C8.14c ; systematic_id "SPBC14C8.14c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2228775 2228775 . + . misc_feature unknown_1709 ; note "G -> T discrepancy with cosmid c15C4" ;
chromosome2 GeneDB misc_feature 2228777 2228777 . + . misc_feature unknown_1710 ; note "T -> G discrepancy with cosmid c15C4" ;
chromosome2 GeneDB misc_feature 2228785 2228790 . - . misc_feature unknown_1711 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2228987 2229032 . - . mRNA SPBC14C8.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.14c" ; systematic_id "SPBC14C8.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2230193 2230227 . + . mRNA SPBC14C8.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.15" ; systematic_id "SPBC14C8.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2230228 2231782 . + . mRNA SPBC14C8.15 ; db_xref "SPD:45/45A07" ; systematic_id "SPBC14C8.15" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016298; lipase activity
GO:0004771; sterol esterase activity
GO:0006629; lipid metabolism
GO:0006696; ergosterol metabolic process
GO:0044242; cellular lipid catabolic process" ; gene "SPBC14C8.15" ; product "triglyceride lipase-cholesterol esterase (predicted)" ; EC_number "3.1.1.-" ;
chromosome2 GeneDB CDS 2230228 2230262 . + . mRNA SPBC14C8.15 ; colour "7" ;
chromosome2 GeneDB CDS 2230317 2230433 . + . mRNA SPBC14C8.15 ; colour "7" ;
chromosome2 GeneDB CDS 2230489 2231542 . + . mRNA SPBC14C8.15 ; colour "7" ;
chromosome2 GeneDB CDS 2231606 2231782 . + . mRNA SPBC14C8.15 ; colour "7" ;
chromosome2 GeneDB misc_feature 2230263 2230268 . + . misc_feature unknown_1712 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2230300 2230316 . + . misc_feature unknown_1713 ; colour "6" ; note "ctaacatttgtttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2230434 2230439 . + . misc_feature unknown_1714 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2230470 2230488 . + . misc_feature unknown_1715 ; colour "6" ; note "ctaacctcggggtttgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2231543 2231548 . + . misc_feature unknown_1716 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2231586 2231605 . + . misc_feature unknown_1717 ; colour "6" ; note "ctaacaagttaaaattaaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2231783 2232009 . + . mRNA SPBC14C8.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.15" ; systematic_id "SPBC14C8.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2231784 2232163 . - . mRNA SPBC14C8.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.16c" ; systematic_id "SPBC14C8.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2232164 2233111 . - . mRNA SPBC14C8.16c ; systematic_id "SPBC14C8.16c" ; colour "2" ; gene "bot1 ||| SPBC14C8.16c" ; db_xref "SPD:13/13C12" ; Alias "bot1" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0009060; aerobic respiration
GO:0032543; mitochondrial translation
GO:0048311; mitochondrion distribution
GO:0008360; regulation of cell shape
GO:0032956; regulation of actin cytoskeleton organization and biogenesis
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR165W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18245278; date=20080226 ||| term=phenotype, cell morphology, bottle/skittle; qualifier=deletion; db_xref=PMID:18245278; date=20080226 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "bot1" ; product "mitochondrial ribosomal protein subunit S35" ;
chromosome2 GeneDB CDS 2232164 2233111 . - . mRNA SPBC14C8.16c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2233598 2234082 . - . mRNA SPBC14C8.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.17c" ; systematic_id "SPBC14C8.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2234083 2235710 . - . mRNA SPBC14C8.17c ; systematic_id "SPBC14C8.17c" ; colour "2" ; gene "SPBC14C8.17c ||| spt8 ||| sep9" ; Alias "spt8" ; db_xref "SPD:26/26A05" ; synonym "sep9" ; GO "GO:0005634; nucleus
GO:0017025; TATA-binding protein binding
GO:0003712; transcription cofactor activity
GO:0006338; chromatin remodeling
GO:0048096; chromatin-mediated maintenance of transcription
GO:0016573; histone acetylation
GO:0010590; regulation of cell separation during cytokinesis
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, branched; allele=sep9-307; db_xref=PMID:10392445; date=20100809 ||| term=phenotype, septation defects; allele=sep9-307; db_xref=PMID:10392445; date=20100809 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR055C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "spt8" ; product "SAGA complex subunit Spt8" ;
chromosome2 GeneDB CDS 2234083 2235608 . - . mRNA SPBC14C8.17c ; colour "2" ;
chromosome2 GeneDB CDS 2235656 2235710 . - . mRNA SPBC14C8.17c ; colour "2" ;
chromosome2 GeneDB misc_feature 2235609 2235624 . - . misc_feature unknown_1718 ; colour "6" ; note "ctgacttcaaatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2235650 2235655 . - . misc_feature unknown_1719 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2235709 2235750 . - . mRNA SPBC14C8.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14C8.17c" ; systematic_id "SPBC14C8.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2235711 2237611 . + . misc_feature unknown_1720 ; note "nominal overlap with cosmid SPBC14C8 and cosmid SPBC15C4" ;
chromosome2 GeneDB 3'-UTR 2236456 2236525 . - . mRNA SPBC15C4.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15C4.01c" ; systematic_id "SPBC15C4.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2236526 2237638 . - . mRNA SPBC15C4.01c ; systematic_id "SPBC15C4.01c" ; colour "2" ; gene "oca3 ||| SPBC15C4.01c ||| emc2" ; Alias "oca3" ; obsolete_name "SPBC14C8.18c" ; db_xref "SPD:17/17E07" ; synonym "emc2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YJR088C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TTC35 ortholog; date=20110201" ; GO "GO:0005783; endoplasmic reticulum
GO:0034975; protein folding in the endoplasmic reticulum
; regulation of mitotic cell cycle
GO:0072546; ER membrane protein complex" ; primary_name "oca3" ; product "TPR repeat protein Oca3/ ER membrane protein complex Ecm2 (predicted)" ;
chromosome2 GeneDB CDS 2236526 2236714 . - . mRNA SPBC15C4.01c ; colour "2" ;
chromosome2 GeneDB CDS 2236792 2236990 . - . mRNA SPBC15C4.01c ; colour "2" ;
chromosome2 GeneDB CDS 2237042 2237187 . - . mRNA SPBC15C4.01c ; colour "2" ;
chromosome2 GeneDB CDS 2237251 2237394 . - . mRNA SPBC15C4.01c ; colour "2" ;
chromosome2 GeneDB CDS 2237468 2237638 . - . mRNA SPBC15C4.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 2236715 2236729 . - . misc_feature unknown_1721 ; colour "6" ; note "ttaacaatttaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2236786 2236791 . - . misc_feature unknown_1722 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2236991 2237006 . - . misc_feature unknown_1723 ; colour "6" ; note "ctaattgattgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2237036 2237041 . - . misc_feature unknown_1724 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2237188 2237200 . - . misc_feature unknown_1725 ; colour "6" ; note "ctaacttcatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2237245 2237250 . - . misc_feature unknown_1726 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2237395 2237411 . - . misc_feature unknown_1727 ; colour "6" ; note "ttaattttttaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2237462 2237467 . - . misc_feature unknown_1728 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2237637 2237778 . - . mRNA SPBC15C4.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15C4.01c" ; systematic_id "SPBC15C4.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2238671 2240704 . + . mRNA SPBC15C4.02 ; systematic_id "SPBC15C4.02" ; colour "10" ; gene "SPBC15C4.02" ; note "first exon may be incorrect, unsupported" ; db_xref "SPD:46/46D01" ; GO "GO:0005739; mitochondrion
GO:0016301; kinase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR253W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ADCK1 ortholog; date=20100727" ; product "ABC1 kinase family protein" ;
chromosome2 GeneDB CDS 2238671 2238895 . + . mRNA SPBC15C4.02 ; colour "10" ;
chromosome2 GeneDB CDS 2238940 2239248 . + . mRNA SPBC15C4.02 ; colour "10" ;
chromosome2 GeneDB CDS 2239362 2240344 . + . mRNA SPBC15C4.02 ; colour "10" ;
chromosome2 GeneDB CDS 2240437 2240704 . + . mRNA SPBC15C4.02 ; colour "10" ;
chromosome2 GeneDB misc_feature 2238896 2238901 . + . misc_feature unknown_1729 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2238929 2238939 . + . misc_feature unknown_1730 ; colour "6" ; note "ctaattttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2239249 2239254 . + . misc_feature unknown_1731 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2239343 2239361 . + . misc_feature unknown_1732 ; colour "6" ; note "ctaatgtataattatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2240345 2240350 . + . misc_feature unknown_1733 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2240423 2240436 . + . misc_feature unknown_1734 ; colour "6" ; note "ttaactgacaacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2240705 2240746 . + . mRNA SPBC15C4.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15C4.02" ; systematic_id "SPBC15C4.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2240916 2242344 . + . mRNA SPBC15C4.03 ; systematic_id "SPBC15C4.03" ; colour "7" ; gene "SPBC15C4.03" ; db_xref "SPD:44/44F06" ; synonym "rep1" ; GO "GO:0007264; small GTPase mediated signal transduction
GO:0005092; GDP-dissociation inhibitor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR370C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, mental retardation; date=20091018 ||| term=human GDI1 and GDI2 ortholog; date=20091018 ||| term=name description, Rab Escort Protein; db_xref=PMID:19486165; date=20091127 ||| term=warning, gene name conflict; cv=warning; date=20091127" ; product "Rab geranylgeranyltransferase escort protein (predicted)" ;
chromosome2 GeneDB CDS 2240916 2240983 . + . mRNA SPBC15C4.03 ; colour "7" ;
chromosome2 GeneDB CDS 2241033 2242344 . + . mRNA SPBC15C4.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 2240984 2240989 . + . misc_feature unknown_1735 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2241012 2241032 . + . misc_feature unknown_1736 ; colour "6" ; note "ctgactgtttgaattatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2242345 2242349 . + . mRNA SPBC15C4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15C4.03" ; systematic_id "SPBC15C4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2242457 2242830 . - . mRNA SPBC15C4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15C4.04c" ; systematic_id "SPBC15C4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2242831 2244459 . - . mRNA SPBC15C4.04c ; db_xref "SPD:26/26A08" ; systematic_id "SPBC15C4.04c" ; colour "7" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPBC15C4.04c" ; product "amino acid permease (predicted)" ;
chromosome2 GeneDB CDS 2242831 2244459 . - . mRNA SPBC15C4.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2244460 2244722 . - . mRNA SPBC15C4.04c ; ID "SPBC15C4.04c" ; systematic_id "SPBC15C4.04c" ; note "mRNA from AU014032" ;
chromosome2 GeneDB 5'-UTR 2246366 2246722 . + . mRNA SPBC15C4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15C4.05" ; systematic_id "SPBC15C4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2246723 2251009 . + . mRNA SPBC15C4.05 ; db_xref "SPD:30/30G06" ; systematic_id "SPBC15C4.05" ; colour "7" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC15C4.05" ; product "ATP-dependent RNA/DNA helicase (predicted)" ;
chromosome2 GeneDB CDS 2246723 2251009 . + . mRNA SPBC15C4.05 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2251010 2251252 . + . mRNA SPBC15C4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15C4.05" ; systematic_id "SPBC15C4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2251530 2251735 . - . mRNA SPBC15C4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15C4.06c" ; systematic_id "SPBC15C4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2251736 2253406 . - . mRNA SPBC15C4.06c ; systematic_id "SPBC15C4.06c" ; colour "7" ; gene "SPBC15C4.06c ||| SPBC21H7.01c" ; db_xref "SPD:35/35A04" ; synonym "SPBC21H7.01c" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB CDS 2251736 2253406 . - . mRNA SPBC15C4.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 2251825 2253406 . + . misc_feature unknown_1737 ; note "nominal overlap with cosmid SPBC15C4 and cosmid SPBC21H7" ;
chromosome2 GeneDB 5'-UTR 2253405 2253670 . - . mRNA SPBC15C4.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15C4.06c" ; systematic_id "SPBC15C4.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2255047 2255201 . + . mRNA SPBC21H7.02 ; ID "SPBC21H7.02" ; systematic_id "SPBC21H7.02" ; note "mRNA from AU010540" ;
chromosome2 GeneDB CDS_parts 2255202 2255849 . + . mRNA SPBC21H7.02 ; systematic_id "SPBC21H7.02" ; colour "2" ; gene "taf10 ||| SPBC21H7.02" ; Alias "taf10" ; db_xref "SPD:07/07D10" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YDR167W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "taf10" ; product "SAGA complex/transcription factor TFIID complex subunit Taf10" ;
chromosome2 GeneDB CDS 2255202 2255849 . + . mRNA SPBC21H7.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2255850 2256092 . + . mRNA SPBC21H7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21H7.02" ; systematic_id "SPBC21H7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2256557 2256643 . - . mRNA SPBC21H7.03c ; ID "SPBC21H7.03c" ; systematic_id "SPBC21H7.03c" ; note "mRNA from AU013961" ;
chromosome2 GeneDB CDS_parts 2256644 2258035 . - . mRNA SPBC21H7.03c ; db_xref "SPD:21/21E09" ; systematic_id "SPBC21H7.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YAR071W and YHR215W and YDL024C and YBR093C and YBR092C; date=19700101 ||| term=gene expression, repressed by thiamine; cv=gene_ex; db_xref=PMID:16278451; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; GO "GO:0005576; extracellular region
GO:0009277; cell wall (sensu Fungi)
GO:0030287; periplasmic space (sensu Fungi)
GO:0003993; acid phosphatase activity
GO:0009897; external side of plasma membrane" ; gene "SPBC21H7.03c" ; product "acid phosphatase (predicted)" ; EC_number "3.1.3.2" ;
chromosome2 GeneDB CDS 2256644 2258035 . - . mRNA SPBC21H7.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2258034 2258296 . - . mRNA SPBC21H7.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21H7.03c" ; systematic_id "SPBC21H7.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2258814 2260943 . + . mRNA SPBC21H7.04 ; systematic_id "SPBC21H7.04" ; colour "7" ; gene "SPBC21H7.04 ||| dbp7" ; Alias "dbp7" ; db_xref "SPD:37/37D10" ; GO "GO:0005730; nucleolus
GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YKR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dbp7" ; product "ATP-dependent RNA helicase Dbp7 (predicted)" ;
chromosome2 GeneDB CDS 2258814 2260943 . + . mRNA SPBC21H7.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2260944 2261031 . + . mRNA SPBC21H7.04 ; ID "SPBC21H7.04" ; systematic_id "SPBC21H7.04" ; note "mRNA from AU006799" ;
chromosome2 GeneDB rRNA 2261371 2261489 . - . rRNA SPRRNA.34 ; systematic_id "SPRRNA.34" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.34" ; product "5S rRNA" ;
chromosome2 GeneDB 5'-UTR 2262202 2262213 . + . mRNA SPBC21H7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21H7.05" ; systematic_id "SPBC21H7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2262214 2264094 . + . mRNA SPBC21H7.05 ; systematic_id "SPBC21H7.05" ; colour "2" ; gene "sfc6 ||| SPBC21H7.05" ; db_xref "SPD:33/33E09" ; Alias "sfc6" ; GO "GO:0000127; transcription factor TFIIIC complex
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003709; RNA polymerase III transcription factor activity
GO:0071443; tDNA binding
GO:0043035; chromatin insulator sequence binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; evidence=TAS; db_xref=PMID:10906331; date=20070216 ||| term=WD repeat protein; date=20070216 ||| term=orthologous to S. cerevisiae YDR362C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sfc6" ; product "transcription factor TFIIIC complex subunit Sfc6" ;
chromosome2 GeneDB CDS 2262214 2263156 . + . mRNA SPBC21H7.05 ; colour "2" ;
chromosome2 GeneDB CDS 2263199 2263315 . + . mRNA SPBC21H7.05 ; colour "2" ;
chromosome2 GeneDB CDS 2263359 2263562 . + . mRNA SPBC21H7.05 ; colour "2" ;
chromosome2 GeneDB CDS 2263610 2264094 . + . mRNA SPBC21H7.05 ; colour "2" ;
chromosome2 GeneDB intron 2263157 2263198 . + . intron SPBC21H7.05 ; db_xref "PMID:10906331" ; systematic_id "SPBC21H7.05" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 2263159 2263162 . + . misc_feature unknown_1738 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2263185 2263198 . + . misc_feature unknown_1739 ; colour "6" ; note "ctaacatgaactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2263316 2263321 . + . misc_feature unknown_1740 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB intron 2263316 2263358 . + . intron SPBC21H7.05 ; db_xref "PMID:10906331" ; systematic_id "SPBC21H7.05" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 2263344 2263358 . + . misc_feature unknown_1741 ; colour "6" ; note "ctaattaagtataag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2263563 2263568 . + . misc_feature unknown_1742 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB intron 2263563 2263609 . + . intron SPBC21H7.05 ; db_xref "PMID:10906331" ; systematic_id "SPBC21H7.05" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 2263595 2263609 . + . misc_feature unknown_1743 ; colour "6" ; note "ctaacttaatatcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2264095 2264130 . + . mRNA SPBC21H7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21H7.05" ; systematic_id "SPBC21H7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2264231 2264301 . - . mRNA SPBC21H7.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21H7.06c" ; systematic_id "SPBC21H7.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2264302 2265030 . - . mRNA SPBC21H7.06c ; db_xref "SPD:08/08G02" ; systematic_id "SPBC21H7.06c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006020; myo-inositol metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC21H7.06c" ; product "inositol metabolism protein Opi10 (predicted)" ;
chromosome2 GeneDB CDS 2264302 2264873 . - . mRNA SPBC21H7.06c ; colour "7" ;
chromosome2 GeneDB CDS 2265000 2265030 . - . mRNA SPBC21H7.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 2264874 2264889 . - . misc_feature unknown_1744 ; colour "6" ; note "ctaatacacaatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2264994 2264999 . - . misc_feature unknown_1745 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2265029 2265116 . - . mRNA SPBC21H7.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21H7.06c" ; systematic_id "SPBC21H7.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snoRNA 2266028 2266169 . + . snoRNA SPSNORNA.36 ; Alias "snR5" ; db_xref "EMBL:AJ632001 ||| PMID:15716270" ; systematic_id "SPSNORNA.36" ; controlled_curation "term=orthologous to S. cerevisiae snR5; date=20070104" ; gene "SPSNORNA.36" ; primary_name "snR5" ; product "small nucleolar RNA snR5" ;
chromosome2 GeneDB 3'-UTR 2266351 2266665 . - . mRNA SPBC21H7.07c ; ID "SPBC21H7.07c" ; systematic_id "SPBC21H7.07c" ; note "mRNA from AU010822" ;
chromosome2 GeneDB CDS_parts 2266666 2267316 . - . mRNA SPBC21H7.07c ; systematic_id "SPBC21H7.07c" ; colour "2" ; gene "his5 ||| SPBC21H7.07c" ; Alias "his5" ; db_xref "SPD:31/31G03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR202W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000105; histidine biosynthesis
GO:0004424; imidazoleglycerol-phosphate dehydratase activity" ; primary_name "his5" ; product "imidazoleglycerol-phosphate dehydratase His5" ; EC_number "4.2.1.19" ;
chromosome2 GeneDB CDS 2266666 2267316 . - . mRNA SPBC21H7.07c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2267317 2267397 . - . mRNA SPBC21H7.07c ; ID "SPBC21H7.07c" ; systematic_id "SPBC21H7.07c" ; note "mRNA from AU011900" ;
chromosome2 GeneDB 5'-UTR 2268475 2268601 . + . mRNA SPBC16H5.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.14c" ; systematic_id "SPBC16H5.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2268602 2269567 . + . mRNA SPBC16H5.14c ; systematic_id "SPBC16H5.14c" ; colour "10" ; gene "SPBC21H7.08 ||| SPBC16H5.14c" ; Alias "SPBC21H7.08" ; db_xref "SPD:13/13G04" ; synonym "SPBC21H7.08" ; controlled_curation "term=orthologous to S. cerevisiae YDL114W and YLR426W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016491; oxidoreductase activity
GO:0005739; mitochondrion" ; primary_name "SPBC21H7.08" ; product "short chain dehydrogenase DHRS family (predicted)" ;
chromosome2 GeneDB CDS 2268602 2268996 . + . mRNA SPBC16H5.14c ; colour "10" ;
chromosome2 GeneDB CDS 2269048 2269178 . + . mRNA SPBC16H5.14c ; colour "10" ;
chromosome2 GeneDB CDS 2269233 2269567 . + . mRNA SPBC16H5.14c ; colour "10" ;
chromosome2 GeneDB misc_feature 2268997 2269002 . + . misc_feature unknown_1746 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2269031 2269047 . + . misc_feature unknown_1747 ; colour "6" ; note "ctaactgcttaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2269115 2269573 . + . misc_feature unknown_1748 ; note "nominal overlap with cosmid SPBC21H7, EM:AL023286 S.pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2269115 2269573 . - . misc_feature unknown_1749 ; note "nominal overlap with cosmid SPBC16H5. EM:AL022104 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2269179 2269184 . + . misc_feature unknown_1750 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2269217 2269232 . + . misc_feature unknown_1751 ; colour "6" ; note "ctaacgtgattaacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2269461 2269572 . - . mRNA SPBC16H5.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.13" ; systematic_id "SPBC16H5.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2269568 2270066 . + . mRNA SPBC16H5.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.14c" ; systematic_id "SPBC16H5.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2269573 2272776 . - . mRNA SPBC16H5.13 ; db_xref "SPD:48/48A07" ; systematic_id "SPBC16H5.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC16H5.13" ; product "WD repeat protein, human WDR7 ortholog" ;
chromosome2 GeneDB CDS 2269573 2271274 . - . mRNA SPBC16H5.13 ; colour "10" ;
chromosome2 GeneDB CDS 2271318 2272430 . - . mRNA SPBC16H5.13 ; colour "10" ;
chromosome2 GeneDB CDS 2272511 2272776 . - . mRNA SPBC16H5.13 ; colour "10" ;
chromosome2 GeneDB misc_feature 2270404 2270513 . - . misc_feature unknown_1752 ; note "Blast N hit to SPAC18B11 Z50728 S.pombe chromosome I, putative conserved domain" ;
chromosome2 GeneDB misc_feature 2271275 2271291 . - . misc_feature unknown_1753 ; colour "6" ; note "ttaatcgacttttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2271312 2271317 . - . misc_feature unknown_1754 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2272431 2272445 . - . misc_feature unknown_1755 ; colour "6" ; note "ctaacattttctcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2272505 2272510 . - . misc_feature unknown_1756 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2272775 2272869 . - . mRNA SPBC16H5.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.13" ; systematic_id "SPBC16H5.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2274012 2274072 . + . mRNA SPBC16H5.12c ; db_xref "PMID:21270388" ; systematic_id "SPBC16H5.12c" ;
chromosome2 GeneDB CDS_parts 2274073 2276707 . + . mRNA SPBC16H5.12c ; systematic_id "SPBC16H5.12c" ; colour "10" ; gene "SPBC16H5.12c" ; db_xref "SPD:38/38C01" ; obsolete_name "SPNCRNA.537" ; synonym "SPNGAF91" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 2274073 2274084 . + . mRNA SPBC16H5.12c ; colour "10" ;
chromosome2 GeneDB CDS 2274139 2274301 . + . mRNA SPBC16H5.12c ; colour "10" ;
chromosome2 GeneDB CDS 2274610 2274721 . + . mRNA SPBC16H5.12c ; colour "10" ;
chromosome2 GeneDB CDS 2274781 2276707 . + . mRNA SPBC16H5.12c ; colour "10" ;
chromosome2 GeneDB intron 2274302 2274384 . + . intron unknown_1757 ; partial "_no_value" ;
chromosome2 GeneDB misc_feature 2274413 2274418 . + . misc_feature unknown_1758 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2274591 2274609 . + . misc_feature unknown_1759 ; colour "6" ; note "ctaataactatcccttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2274722 2274727 . + . misc_feature unknown_1760 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 2274722 2274780 . + . intron unknown_1761 ; note "confirmed" ;
chromosome2 GeneDB misc_feature 2274766 2274780 . + . misc_feature unknown_1762 ; colour "6" ; note "ctaaccttttttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2276708 2276995 . + . mRNA SPBC16H5.12c ; ID "SPBC16H5.12c" ; systematic_id "SPBC16H5.12c" ; note "mRNA from spc00831" ;
chromosome2 GeneDB CDS_parts 2277215 2279247 . + . mRNA SPBC16H5.11c ; systematic_id "SPBC16H5.11c" ; colour "2" ; gene "skb1 ||| SPBC16H5.11c ||| rmt5" ; Alias "skb1" ; db_xref "SPD:33/33F07" ; synonym "rmt5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11278267; date=19700101 ||| term=orthologous to S. cerevisiae YBR133C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Shk1 Kinase Binding protein; cv=name_description; date=20100317 ||| term=human PRMT5 ortholog; date=20100908 ||| term=phenotype, cell morphology, small cells; db_xref=PMID:9843966; date=20101207" ; GO "GO:0051286; cell tip
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0016274; protein-arginine N-methyltransferase activity
GO:0034613; cellular protein localization
GO:2000100; establishment and/or maintenance of bipolar cell polarity during cell shaping
GO:0045930; negative regulation of mitotic cell cycle
GO:0035246; peptidyl-arginine N-methylation
GO:0047484; cellular response to osmotic stress" ; primary_name "skb1" ; product "type II protein arginine N-methyltransferase Skb1" ; EC_number "2.1.1.-" ;
chromosome2 GeneDB CDS 2277215 2277464 . + . mRNA SPBC16H5.11c ; colour "2" ;
chromosome2 GeneDB CDS 2277514 2279012 . + . mRNA SPBC16H5.11c ; colour "2" ;
chromosome2 GeneDB CDS 2279059 2279247 . + . mRNA SPBC16H5.11c ; colour "2" ;
chromosome2 GeneDB misc_feature 2277465 2277470 . + . misc_feature unknown_1763 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2277495 2277513 . + . misc_feature unknown_1764 ; colour "6" ; note "ttaaccaattttactatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2279013 2279018 . + . misc_feature unknown_1765 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2279045 2279058 . + . misc_feature unknown_1766 ; colour "6" ; note "ctaatatttcctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2279248 2279364 . + . mRNA SPBC16H5.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.11c" ; systematic_id "SPBC16H5.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2279742 2279762 . + . mRNA SPBC16H5.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.10c" ; systematic_id "SPBC16H5.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2279763 2281970 . + . mRNA SPBC16H5.10c ; systematic_id "SPBC16H5.10c" ; colour "7" ; gene "prp43 ||| SPBC16H5.10c" ; Alias "prp43" ; db_xref "SPD:46/46F10" ; GO "GO:0005681 ; spliceosome complex
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0000390; spliceosome disassembly
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YGL120C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp43" ; product "ATP-dependent RNA helicase Prp43 (predicted)" ;
chromosome2 GeneDB CDS 2279763 2281970 . + . mRNA SPBC16H5.10c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2281971 2282163 . + . mRNA SPBC16H5.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.10c" ; systematic_id "SPBC16H5.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2282443 2282565 . + . mRNA SPBC16H5.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.09c" ; systematic_id "SPBC16H5.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2282566 2283827 . + . mRNA SPBC16H5.09c ; systematic_id "SPBC16H5.09c" ; colour "7" ; gene "SPBC16H5.09c" ; Alias "omh2" ; db_xref "SPD:20/20B07" ; GO "GO:0000026; alpha-1,2-mannosyltransferase activity
GO:0035269; protein amino acid O-linked mannosylation
GO:0000032; cell wall mannoprotein biosynthesis
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR099W and YKR061W and YJL139C and YDR483W and YBR205W and YBR199W and YPL053C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100525" ; primary_name "omh2" ; product "alpha-1,2-mannosyltransferase Omh2 (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB CDS 2282566 2283363 . + . mRNA SPBC16H5.09c ; colour "7" ;
chromosome2 GeneDB CDS 2283410 2283508 . + . mRNA SPBC16H5.09c ; colour "7" ;
chromosome2 GeneDB CDS 2283562 2283715 . + . mRNA SPBC16H5.09c ; colour "7" ;
chromosome2 GeneDB CDS 2283760 2283827 . + . mRNA SPBC16H5.09c ; colour "7" ;
chromosome2 GeneDB misc_feature 2283364 2283369 . + . misc_feature unknown_1767 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2283396 2283409 . + . misc_feature unknown_1768 ; colour "6" ; note "ctaactattgcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2283509 2283514 . + . misc_feature unknown_1769 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2283546 2283561 . + . misc_feature unknown_1770 ; colour "6" ; note "ctaaaacaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2283716 2283721 . + . misc_feature unknown_1771 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2283745 2283759 . + . misc_feature unknown_1772 ; colour "6" ; note "ctgacaatttattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2283828 2283951 . + . mRNA SPBC16H5.09c ; ID "SPBC16H5.09c" ; systematic_id "SPBC16H5.09c" ; note "mRNA from spc09362" ;
chromosome2 GeneDB 5'-UTR 2284367 2284376 . + . mRNA SPBC16H5.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.08c" ; systematic_id "SPBC16H5.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2284377 2286345 . + . mRNA SPBC16H5.08c ; db_xref "SPD:27/27B09" ; systematic_id "SPBC16H5.08c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0042254; ribosome biogenesis and assembly
GO:0000056; ribosomal small subunit export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YER036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC16H5.08c" ; product "ribosome biogenesis ATPase, Arb family ABCF2- like (predicted)" ;
chromosome2 GeneDB CDS 2284377 2284412 . + . mRNA SPBC16H5.08c ; colour "7" ;
chromosome2 GeneDB CDS 2284525 2286345 . + . mRNA SPBC16H5.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 2284413 2284418 . + . misc_feature unknown_1773 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2284510 2284524 . + . misc_feature unknown_1774 ; colour "6" ; note "ctaacaaatgtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2286346 2286396 . + . mRNA SPBC16H5.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.08c" ; systematic_id "SPBC16H5.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2286945 2287016 . + . mRNA SPBC16H5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.07c" ; systematic_id "SPBC16H5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2287017 2288277 . + . mRNA SPBC16H5.07c ; systematic_id "SPBC16H5.07c" ; colour "2" ; gene "ppa2 ||| SPBC16H5.07c" ; Alias "ppa2" ; db_xref "SPD:32/32G03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PP2A; date=19700101 ||| term=orthologous to S. cerevisiae YDL134C and YDL188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:8389308; date=20101124" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0045930; negative regulation of progression through mitotic cell cycle
GO:0045930; negative regulation of progression through mitotic cell cycle
GO:0005737; cytoplasm" ; primary_name "ppa2" ; product "serine/threonine protein phosphatase Ppa2" ; EC_number "3.1.3.16" ;
chromosome2 GeneDB CDS 2287017 2287157 . + . mRNA SPBC16H5.07c ; colour "2" ;
chromosome2 GeneDB CDS 2287450 2288277 . + . mRNA SPBC16H5.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 2287158 2287163 . + . misc_feature unknown_1775 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2287433 2287449 . + . misc_feature unknown_1776 ; colour "6" ; note "ctaaccattttttctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2288278 2288761 . + . mRNA SPBC16H5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.07c" ; systematic_id "SPBC16H5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2289153 2289371 . - . mRNA SPBC16H5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.06" ; systematic_id "SPBC16H5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2289372 2290058 . - . mRNA SPBC16H5.06 ; systematic_id "SPBC16H5.06" ; colour "2" ; gene "rip1 ||| SPBC16H5.06" ; Alias "rip1" ; db_xref "SPD:31/31G11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0005743; mitochondrial inner membrane" ; primary_name "rip1" ; product "ubiquinol-cytochrome-c reductase complex subunit 5" ; EC_number "1.10.2.2" ;
chromosome2 GeneDB CDS 2289372 2290058 . - . mRNA SPBC16H5.06 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2290057 2290083 . - . mRNA SPBC16H5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.06" ; systematic_id "SPBC16H5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2290640 2290802 . - . mRNA SPBC16H5.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.15" ; systematic_id "SPBC16H5.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2290803 2291303 . - . mRNA SPBC16H5.15 ; db_xref "SPD:04/04H06" ; systematic_id "SPBC16H5.15" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to A. fumigatus Afu8g05100; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC16H5.15" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 2290803 2291303 . - . mRNA SPBC16H5.15 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 2291302 2291347 . - . mRNA SPBC16H5.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.15" ; systematic_id "SPBC16H5.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2291571 2291577 . + . mRNA SPBC16H5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.05c" ; systematic_id "SPBC16H5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2291578 2293141 . + . mRNA SPBC16H5.05c ; systematic_id "SPBC16H5.05c" ; colour "2" ; gene "cyp7 ||| cwf27 ||| SPBC16H5.05c" ; Alias "cyp7" ; db_xref "SPD:25/25C03" ; synonym "cwf27" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0003755; peptidyl-prolyl cis-trans isomerase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YPL064C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cyp7" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp7 (predicted)" ; EC_number "5.2.1.8" ;
chromosome2 GeneDB CDS 2291578 2291583 . + . mRNA SPBC16H5.05c ; colour "2" ;
chromosome2 GeneDB CDS 2291624 2291652 . + . mRNA SPBC16H5.05c ; colour "2" ;
chromosome2 GeneDB CDS 2291695 2291799 . + . mRNA SPBC16H5.05c ; colour "2" ;
chromosome2 GeneDB CDS 2291890 2293141 . + . mRNA SPBC16H5.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 2291584 2291589 . + . misc_feature unknown_1777 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2291612 2291623 . + . misc_feature unknown_1778 ; colour "6" ; note "ctaatctctcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2291653 2291658 . + . misc_feature unknown_1779 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2291683 2291694 . + . misc_feature unknown_1780 ; colour "6" ; note "ctaacattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2291800 2291805 . + . misc_feature unknown_1781 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2291876 2291889 . + . misc_feature unknown_1782 ; colour "6" ; note "ctaattaaatacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2293142 2293162 . + . mRNA SPBC16H5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.05c" ; systematic_id "SPBC16H5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2293393 2294125 . - . mRNA SPBC16H5.04 ; db_xref "SPD:08/08G11" ; systematic_id "SPBC16H5.04" ; colour "7" ; GO "GO:0016020; membrane
GO:0005739; mitochondrion
GO:2000185; regulation of phosphate transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR106W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC16H5.04" ; product "pho88 family protein (predicted)" ;
chromosome2 GeneDB CDS 2293393 2293775 . - . mRNA SPBC16H5.04 ; colour "7" ;
chromosome2 GeneDB CDS 2293877 2294039 . - . mRNA SPBC16H5.04 ; colour "7" ;
chromosome2 GeneDB CDS 2294087 2294125 . - . mRNA SPBC16H5.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 2293776 2293788 . - . misc_feature unknown_1783 ; colour "6" ; note "ctaacaattctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2293871 2293876 . - . misc_feature unknown_1784 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2294040 2294051 . - . misc_feature unknown_1785 ; colour "6" ; note "ttaacatgatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2294081 2294086 . - . misc_feature unknown_1786 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 2295031 2297089 . + . mRNA SPBC16H5.03c ; systematic_id "SPBC16H5.03c" ; colour "7" ; gene "fub2 ||| uba2 ||| SPBC16H5.03c" ; Alias "fub2" ; db_xref "SPD:39/39F05" ; synonym "uba2" ; GO "GO:0016925; protein sumoylation
GO:0019948; SUMO activating enzyme activity
GO:0005634; nucleus
GO:0031510; SUMO activating enzyme complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR390C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "fub2" ; product "SUMO E1-like activator enzyme Fub2 (predicted)" ;
chromosome2 GeneDB CDS 2295031 2295111 . + . mRNA SPBC16H5.03c ; colour "7" ;
chromosome2 GeneDB CDS 2295153 2295233 . + . mRNA SPBC16H5.03c ; colour "7" ;
chromosome2 GeneDB CDS 2295324 2296382 . + . mRNA SPBC16H5.03c ; colour "7" ;
chromosome2 GeneDB CDS 2296424 2297089 . + . mRNA SPBC16H5.03c ; colour "7" ;
chromosome2 GeneDB misc_feature 2295112 2295117 . + . misc_feature unknown_1787 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2295138 2295152 . + . misc_feature unknown_1788 ; colour "6" ; note "ttaacaattggtcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2295234 2295239 . + . misc_feature unknown_1789 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2295306 2295323 . + . misc_feature unknown_1790 ; colour "6" ; note "ttaactcttatactgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2296383 2296388 . + . misc_feature unknown_1791 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2296411 2296423 . + . misc_feature unknown_1792 ; colour "6" ; note "ctaacaatttaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2297164 2297465 . - . mRNA SPBC16H5.02 ; Alias "pfk1" ; ID "SPBC16H5.02" ; db_xref "EMBL:D89110" ; systematic_id "SPBC16H5.02" ; primary_name "pfk1" ; note "mRNA from SPD110" ;
chromosome2 GeneDB CDS_parts 2297466 2300294 . - . mRNA SPBC16H5.02 ; systematic_id "SPBC16H5.02" ; colour "2" ; gene "pfk1 ||| SPBC16H5.02" ; Alias "pfk1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00030; ||| KEGG:MAP00051; ||| KEGG:MAP00052; ||| SPD:29/29E09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR205C and YGR240C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0003872; 6-phosphofructokinase activity
GO:0003872; 6-phosphofructokinase activity
GO:0006096; glycolysis
GO:0006096; glycolysis
GO:0005945; 6-phosphofructokinase complex
GO:0070095; fructose-6-phosphate binding
GO:0005524; ATP binding" ; primary_name "pfk1" ; product "6-phosphofructokinase (predicted)" ; EC_number "2.7.1.11" ;
chromosome2 GeneDB CDS 2297466 2300294 . - . mRNA SPBC16H5.02 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2300293 2300422 . - . mRNA SPBC16H5.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16H5.02" ; systematic_id "SPBC16H5.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2300295 2304182 . + . misc_feature unknown_1793 ; note "gene free region" ;
chromosome2 GeneDB misc_RNA 2301759 2303132 . + . misc_RNA SPNCRNA.538 ; db_xref "PMID:18488015" ; synonym "SPNGAF83" ; systematic_id "SPNCRNA.538" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB misc_feature 2302300 2304774 . - . misc_feature unknown_1794 ; note "nominal overlap with cosmid SPBC16H5, EM:AL022104 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2302300 2304774 . + . misc_feature unknown_1795 ; note "nominal overlap with cosmid SPBC12D12, EM:AL035085 S.pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 2303776 2304181 . + . mRNA SPBC12D12.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12D12.01" ; systematic_id "SPBC12D12.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2304182 2305726 . + . mRNA SPBC12D12.01 ; systematic_id "SPBC12D12.01" ; colour "2" ; gene "sad1 ||| SPBC16H5.01c ||| SPBC12D12.01" ; note "YJL019W (Ned98) is reciprocal best hit (blast), ordered hsps, has conserved residues with other orthologs, both have 1 TMM, functionally similar" ; Alias "sad1" ; db_xref "SPD:33/33B06" ; synonym "SPBC16H5.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7744953; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005639; integral to nuclear membrane
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0090307; spindle assembly involved in mitosis
GO:0030474; spindle pole body duplication
GO:0034993; SUN-KASH complex
GO:0005515; protein binding" ; primary_name "sad1" ; product "spindle pole body protein Sad1" ;
chromosome2 GeneDB CDS 2304182 2305726 . + . mRNA SPBC12D12.01 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2305691 2305757 . - . mRNA SPBC12D12.02c ; ID "SPBC12D12.02c" ; systematic_id "SPBC12D12.02c" ; note "mRNA from SPO6032" ;
chromosome2 GeneDB CDS_parts 2305758 2306240 . - . mRNA SPBC12D12.02c ; systematic_id "SPBC12D12.02c" ; colour "2" ; gene "cdm1 ||| SPBC12D12.02c" ; Alias "cdm1" ; db_xref "SPD:31/31D12" ; GO "GO:0043625; delta DNA polymerase complex
GO:0006271; DNA strand elongation
GO:0000731; DNA synthesis during DNA repair
GO:0003887; DNA-directed DNA polymerase activity
GO:0043596; nuclear replication fork
GO:0008408; 3'-5' exonuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9799358; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cdm1" ; product "DNA polymerase delta subunit Cdm1" ;
chromosome2 GeneDB CDS 2305758 2306240 . - . mRNA SPBC12D12.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2306241 2306339 . - . mRNA SPBC12D12.02c ; ID "SPBC12D12.02c" ; systematic_id "SPBC12D12.02c" ; note "mRNA from SPO6032" ;
chromosome2 GeneDB 5'-UTR 2307408 2307435 . + . mRNA SPBC12D12.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12D12.03" ; systematic_id "SPBC12D12.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2307436 2309436 . + . mRNA SPBC12D12.03 ; systematic_id "SPBC12D12.03" ; colour "2" ; gene "cct1 ||| SPBC12D12.03" ; Alias "cct1" ; db_xref "SPD:27/27D06" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cct1" ; product "chaperonin-containing T-complex alpha subunit Cct1" ;
chromosome2 GeneDB CDS 2307436 2307466 . + . mRNA SPBC12D12.03 ; colour "2" ;
chromosome2 GeneDB CDS 2307515 2307562 . + . mRNA SPBC12D12.03 ; colour "2" ;
chromosome2 GeneDB CDS 2307601 2307686 . + . mRNA SPBC12D12.03 ; colour "2" ;
chromosome2 GeneDB CDS 2307931 2309436 . + . mRNA SPBC12D12.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 2307467 2307472 . + . misc_feature unknown_1796 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2307501 2307514 . + . misc_feature unknown_1797 ; colour "6" ; note "ttaacatgttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2307563 2307568 . + . misc_feature unknown_1798 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2307589 2307600 . + . misc_feature unknown_1799 ; colour "6" ; note "ttaacattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2307687 2307692 . + . misc_feature unknown_1800 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2307917 2307930 . + . misc_feature unknown_1801 ; colour "6" ; note "ctaacttgtattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2309437 2309574 . + . mRNA SPBC12D12.03 ; ID "SPBC12D12.03" ; systematic_id "SPBC12D12.03" ; note "mRNA from AU012814" ;
chromosome2 GeneDB CDS_parts 2309787 2312837 . - . mRNA SPBC12D12.04c ; systematic_id "SPBC12D12.04c" ; colour "2" ; gene "pck2 ||| sts6 ||| pkc1 ||| SPBC12D12.04c" ; Alias "pck2" ; db_xref "SPD:34/34A04" ; synonym "sts6 ||| pkc1" ; GO "GO:0030428; cell septum
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004697; protein kinase C activity
GO:0023034; intracellular signaling cascade
GO:0050850; positive regulation of calcium- mediated signaling
GO:0006468; protein amino acid phosphorylation
GO:0090334; regulation of 1,3-beta-glucan biosynthetic process
GO:0032949; regulation of alpha-glucan biosynthetic process
; regulation of establishment and/or maintenance of cell polarity
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8491190; date=19700101 ||| term=C1 domain; date=19700101 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YBL105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target of Rho1; db_xref=PMID:10504305; date=20100825 ||| term=target of Rho2; db_xref=PMID:10504305; date=20100825" ; primary_name "pck2" ; product "protein kinase C (PKC)-like Pck2" ; EC_number "2.7.1.-" ;
chromosome2 GeneDB CDS 2309787 2312837 . - . mRNA SPBC12D12.04c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2312836 2313020 . - . mRNA SPBC12D12.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12D12.04c" ; systematic_id "SPBC12D12.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2313544 2314476 . + . mRNA SPBC12D12.09 ; systematic_id "SPBC12D12.09" ; colour "7" ; obsolete_name "SPAC12D12.09" ; Alias "rev7" ; GO "GO:0005739; mitochondrion
GO:0043596; nuclear replication fork
GO:0016035; zeta DNA polymerase complex
; DNA-directed DNA polymerase activity
GO:0006281; DNA repair
GO:0042276; error prone translesion synthesis
GO:0070987; error-free translesion synthesis
GO:0043504; mitochondrial DNA repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; attribution=pers. comm. Nicole Kosarek; date=20100408" ; primary_name "rev7" ; product "DNA polymerase zeta Rev7 (predicted)" ;
chromosome2 GeneDB CDS 2313544 2313574 . + . mRNA SPBC12D12.09 ; colour "7" ;
chromosome2 GeneDB CDS 2313624 2313650 . + . mRNA SPBC12D12.09 ; colour "7" ;
chromosome2 GeneDB CDS 2313694 2313744 . + . mRNA SPBC12D12.09 ; colour "7" ;
chromosome2 GeneDB CDS 2313785 2313897 . + . mRNA SPBC12D12.09 ; colour "7" ;
chromosome2 GeneDB CDS 2313940 2314055 . + . mRNA SPBC12D12.09 ; colour "7" ;
chromosome2 GeneDB CDS 2314104 2314207 . + . mRNA SPBC12D12.09 ; colour "7" ;
chromosome2 GeneDB CDS 2314277 2314476 . + . mRNA SPBC12D12.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 2313575 2313580 . + . misc_feature unknown_1802 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2313612 2313623 . + . misc_feature unknown_1803 ; colour "6" ; note "cttaaactattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2313651 2313656 . + . misc_feature unknown_1804 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2313682 2313693 . + . misc_feature unknown_1805 ; colour "6" ; note "cttacaattcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2313745 2313750 . + . misc_feature unknown_1806 ; colour "6" ; note "gtattc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2313769 2313784 . + . misc_feature unknown_1807 ; colour "6" ; note "ttaactctcatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2313898 2313903 . + . misc_feature unknown_1808 ; colour "6" ; note "gtattc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2313924 2313939 . + . misc_feature unknown_1809 ; colour "6" ; note "ctaactgctcgtctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2314056 2314061 . + . misc_feature unknown_1810 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2314089 2314103 . + . misc_feature unknown_1811 ; colour "6" ; note "ttaacaatattgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2314208 2314213 . + . misc_feature unknown_1812 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2314258 2314276 . + . misc_feature unknown_1813 ; colour "6" ; note "ctaataatactgaaattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2314283 2314668 . - . mRNA SPBC12D12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12D12.05c" ; systematic_id "SPBC12D12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2314458 2314463 . - . misc_feature unknown_1814 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 2314669 2315986 . - . mRNA SPBC12D12.05c ; db_xref "SPD:23/23A01" ; systematic_id "SPBC12D12.05c" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0005215; transporter activity
GO:0005509; calcium ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=disease associated, Graves' disease; date=19700101 ||| term=orthologous to S. cerevisiae YNL083W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC12D12.05c" ; product "mitochondrial carrier, calcium binding subfamily (predicted)" ;
chromosome2 GeneDB CDS 2314669 2315787 . - . mRNA SPBC12D12.05c ; colour "7" ;
chromosome2 GeneDB CDS 2315825 2315986 . - . mRNA SPBC12D12.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 2315788 2315798 . - . misc_feature unknown_1815 ; colour "6" ; note "ttaaccattag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2315788 2315824 . - . intron SPBC12D12.05c ; systematic_id "SPBC12D12.05c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2315819 2315824 . - . misc_feature unknown_1816 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2316043 2316167 . + . mRNA SPBC12D12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12D12.06" ; systematic_id "SPBC12D12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2316168 2317408 . + . mRNA SPBC12D12.06 ; systematic_id "SPBC12D12.06" ; colour "2" ; gene "srb11 ||| SPBC12D12.06" ; Alias "srb11" ; db_xref "SPD:19/19G11" ; GO "GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YNL025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "srb11" ; product "cyclin CycC, Srb mediator subunit Srb11" ;
chromosome2 GeneDB CDS 2316168 2316199 . + . mRNA SPBC12D12.06 ; colour "2" ;
chromosome2 GeneDB CDS 2316612 2316691 . + . mRNA SPBC12D12.06 ; colour "2" ;
chromosome2 GeneDB CDS 2316770 2317136 . + . mRNA SPBC12D12.06 ; colour "2" ;
chromosome2 GeneDB CDS 2317201 2317408 . + . mRNA SPBC12D12.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 2316200 2316205 . + . misc_feature unknown_1817 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2316600 2316611 . + . misc_feature unknown_1818 ; colour "6" ; note "ctgaccttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2316692 2316697 . + . misc_feature unknown_1819 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2316755 2316769 . + . misc_feature unknown_1820 ; colour "6" ; note "ctgatacaattctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2317137 2317142 . + . misc_feature unknown_1821 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2317182 2317200 . + . misc_feature unknown_1822 ; colour "6" ; note "ctaacgatcgaggaaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2317409 2317478 . + . mRNA SPBC12D12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12D12.06" ; systematic_id "SPBC12D12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2317534 2317983 . - . mRNA SPBC12D12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12D12.07c" ; systematic_id "SPBC12D12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2317984 2318431 . - . mRNA SPBC12D12.07c ; systematic_id "SPBC12D12.07c" ; colour "2" ; gene "trx2 ||| SPBC12D12.07c" ; Alias "trx2" ; db_xref "SPD:42/42B04" ; GO "GO:0005739; mitochondrion
GO:0034614; cellular response to reactive oxygen species
GO:0015035; protein disulfide oxidoreductase activity
GO:0042450; arginine biosynthetic process via ornithine
GO:0005515; protein binding
GO:0006467; protein thiol disulphide exchange
GO:0000050; urea cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for cysteine; db_xref=PMID:18849471; date=20100623 ||| term=phenotype, growth auxotrophic for carginine; db_xref=PMID:18849471; date=20100623 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YCR083W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "trx2" ; product "mitochondrial thioredoxin Trx2" ;
chromosome2 GeneDB CDS 2317984 2318251 . - . mRNA SPBC12D12.07c ; colour "2" ;
chromosome2 GeneDB CDS 2318334 2318431 . - . mRNA SPBC12D12.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 2318252 2318265 . - . misc_feature unknown_1823 ; colour "6" ; note "ctaattgctactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2318328 2318333 . - . misc_feature unknown_1824 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2318430 2318520 . - . mRNA SPBC12D12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12D12.07c" ; systematic_id "SPBC12D12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 2319292 2319363 . + . tRNA SPBTRNAPRO.06 ; systematic_id "SPBTRNAPRO.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033448; AGG codon-amino acid adaptor activity" ; gene "SPBTRNAPRO.06" ; product "tRNA Proline" ; note "tRNA Pro anticodon AGG, Cove score 48.70" ;
chromosome2 GeneDB misc_feature 2319634 2320299 . + . misc_feature unknown_1825 ; note "nominal overlap with cosmid SPBC12D12, EM:AL035085 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2319634 2320299 . - . misc_feature unknown_1826 ; note "nominal overlap with cosmid SPBC24C6, EM:AL031786 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 2319758 2319850 . - . mRNA SPBC12D12.08c ; ID "SPBC12D12.08c" ; systematic_id "SPBC12D12.08c" ; note "mRNA from SPUBL1" ;
chromosome2 GeneDB CDS_parts 2319851 2320256 . - . mRNA SPBC12D12.08c ; systematic_id "SPBC12D12.08c" ; colour "2" ; gene "ned8 ||| nedd8 ||| ubl1 ||| SPBC12D12.08c ||| SPBC24C6.01c" ; Alias "ned8" ; db_xref "SPD:03/03B06" ; synonym "nedd8 ||| ubl1 ||| SPBC24C6.01c" ; GO "GO:0051443; positive regulation of ubiquitin ligase activity
GO:0045116; protein neddylation
GO:0031386; protein tag
GO:0019005; SCF ubiquitin ligase complex
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; db_xref=PMID:10880460; cv=phenotype; date=20100309 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:10880460; date=20100708 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Cul1; db_xref=PMID:10880460; date=20100825" ; primary_name "ned8" ; product "ubiquitin-like protein modifier Ned8" ;
chromosome2 GeneDB CDS 2319851 2319938 . - . mRNA SPBC12D12.08c ; colour "2" ;
chromosome2 GeneDB CDS 2319989 2320101 . - . mRNA SPBC12D12.08c ; colour "2" ;
chromosome2 GeneDB CDS 2320173 2320190 . - . mRNA SPBC12D12.08c ; colour "2" ;
chromosome2 GeneDB CDS 2320239 2320256 . - . mRNA SPBC12D12.08c ; colour "2" ;
chromosome2 GeneDB misc_feature 2319939 2319956 . - . misc_feature unknown_1827 ; colour "6" ; note "ctaacaaacatcacgtag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2319939 2319988 . - . intron SPBC12D12.08c ; systematic_id "SPBC12D12.08c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2319983 2319988 . - . misc_feature unknown_1828 ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2320102 2320117 . - . misc_feature unknown_1829 ; colour "6" ; note "ctaaccaaaatataag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2320102 2320172 . - . intron SPBC12D12.08c ; systematic_id "SPBC12D12.08c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2320167 2320172 . - . misc_feature unknown_1830 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2320191 2320207 . - . misc_feature unknown_1831 ; note "ctaatatataatcatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2320191 2320238 . - . intron SPBC12D12.08c ; systematic_id "SPBC12D12.08c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2320233 2320238 . - . misc_feature unknown_1832 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2320257 2320292 . - . mRNA SPBC12D12.08c ; ID "SPBC12D12.08c" ; systematic_id "SPBC12D12.08c" ; note "mRNA from SPUBL1" ;
chromosome2 GeneDB 5'-UTR 2320336 2320382 . + . mRNA SPBC24C6.02 ; ID "SPBC24C6.02" ; systematic_id "SPBC24C6.02" ; note "mRNA from AU007021" ;
chromosome2 GeneDB CDS_parts 2320383 2322332 . + . mRNA SPBC24C6.02 ; db_xref "SPD:46/46B11" ; systematic_id "SPBC24C6.02" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus
GO:0004004; ATP-dependent RNA helicase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YFL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC24C6.02" ; product "ATP-dependent RNA helicase Spb4 (predicted)" ;
chromosome2 GeneDB CDS 2320383 2320417 . + . mRNA SPBC24C6.02 ; colour "7" ;
chromosome2 GeneDB CDS 2320547 2322332 . + . mRNA SPBC24C6.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 2320418 2320423 . + . misc_feature unknown_1833 ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 2320418 2320546 . + . intron SPBC24C6.02 ; systematic_id "SPBC24C6.02" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2320533 2320546 . + . misc_feature unknown_1834 ; note "ctaacataaactag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2322333 2322428 . + . mRNA SPBC24C6.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.02" ; systematic_id "SPBC24C6.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB rRNA 2322705 2322851 . + . rRNA SPRRNA.35 ; systematic_id "SPRRNA.35" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "5S rRNA" ;
chromosome2 GeneDB 5'-UTR 2322919 2323023 . + . mRNA SPBC24C6.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.03" ; systematic_id "SPBC24C6.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2323024 2324301 . + . mRNA SPBC24C6.03 ; db_xref "KEGG:MAP00330; ||| KEGG:MAP00970; ||| SPD:20/20D12" ; systematic_id "SPBC24C6.03" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER087W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004827; proline-tRNA ligase activity
GO:0006433; prolyl-tRNA aminoacylation" ; gene "SPBC24C6.03" ; product "mitochondrial proline-tRNA ligase (predicted)" ; EC_number "6.1.1.15" ;
chromosome2 GeneDB CDS 2323024 2324301 . + . mRNA SPBC24C6.03 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2324302 2324623 . + . mRNA SPBC24C6.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.03" ; systematic_id "SPBC24C6.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2325049 2325118 . + . mRNA SPBC24C6.04 ; ID "SPBC24C6.04" ; db_xref "PMID:18488015" ; systematic_id "SPBC24C6.04" ; synonym "SPNG1620" ;
chromosome2 GeneDB intron 2325119 2325233 . + . intron unknown_1835 ; db_xref "PMID:18488015" ; note "predicted from transcriptome data" ;
chromosome2 GeneDB CDS_parts 2325256 2326902 . + . mRNA SPBC24C6.04 ; db_xref "SPD:34/34F02" ; systematic_id "SPBC24C6.04" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR037W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003842; 1-pyrroline-5-carboxylate dehydrogenase activity
GO:0006537; glutamate biosynthesis
GO:0006561; proline biosynthesis
GO:0005739; mitochondrion" ; gene "SPBC24C6.04" ; product "delta-1-pyrroline-5-carboxylate dehydrogenase (predicted)" ; EC_number "1.5.1.12" ;
chromosome2 GeneDB CDS 2325256 2326902 . + . mRNA SPBC24C6.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2326903 2327098 . + . mRNA SPBC24C6.04 ; ID "SPBC24C6.04" ; systematic_id "SPBC24C6.04" ; note "mRNA from SPD230" ;
chromosome2 GeneDB 5'-UTR 2327488 2327505 . + . mRNA SPBC24C6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.05" ; systematic_id "SPBC24C6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2327506 2328416 . + . mRNA SPBC24C6.05 ; systematic_id "SPBC24C6.05" ; colour "7" ; gene "sec28 ||| SPBC24C6.05" ; Alias "sec28" ; db_xref "SPD:12/12F03" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030126; COPI vesicle coat
GO:0006886; intracellular protein transport
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YIL076W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec28" ; product "coatomer epsilon subunit (predicted)" ;
chromosome2 GeneDB CDS 2327506 2327536 . + . mRNA SPBC24C6.05 ; colour "7" ;
chromosome2 GeneDB CDS 2327581 2328416 . + . mRNA SPBC24C6.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 2327537 2327542 . + . misc_feature unknown_1836 ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2327567 2327580 . + . misc_feature unknown_1837 ; note "ctaatatttgatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2328417 2328418 . + . mRNA SPBC24C6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.05" ; systematic_id "SPBC24C6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2329741 2330337 . + . mRNA SPBC24C6.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.06" ; systematic_id "SPBC24C6.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2330338 2331561 . + . mRNA SPBC24C6.06 ; systematic_id "SPBC24C6.06" ; colour "2" ; gene "gpa1 ||| SPBC24C6.06" ; Alias "gpa1" ; db_xref "SPD:32/32F08" ; GO "GO:0005834; heterotrimeric G-protein complex
GO:0003924; GTPase activity
GO:0000747; conjugation with cellular fusion
GO:0060240; negative regulation of signal transduction during conjugation with cellular fusion
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1905818; date=19700101 ||| term=orthologous to S. cerevisiae YHR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gpa1" ; product "G-protein alpha subunit" ;
chromosome2 GeneDB CDS 2330338 2331561 . + . mRNA SPBC24C6.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2331562 2331781 . + . mRNA SPBC24C6.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.06" ; systematic_id "SPBC24C6.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2332270 2332992 . + . mRNA SPBC24C6.07 ; systematic_id "SPBC24C6.07" ; colour "2" ; gene "cdc14 ||| SPBC24C6.07" ; Alias "cdc14" ; db_xref "SPD:31/31H04" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0034613; cellular protein localization
GO:0007346; regulation of mitotic cell cycle
GO:0031028; septation initiation signaling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8334307; date=19700101 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:8334307; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, multinucleate; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "cdc14" ; product "SIN component Cdc14" ;
chromosome2 GeneDB CDS 2332270 2332992 . + . mRNA SPBC24C6.07 ; colour "2" ;
chromosome2 GeneDB intron 2333081 2333179 . - . intron SPBC24C6.08c ; systematic_id "SPBC24C6.08c" ; note "putative intron which would give small C-terminal exon" ;
chromosome2 GeneDB 3'-UTR 2333155 2333173 . - . mRNA SPBC24C6.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.08c" ; systematic_id "SPBC24C6.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2333174 2334277 . - . mRNA SPBC24C6.08c ; db_xref "SPD:17/17D02" ; systematic_id "SPBC24C6.08c" ; colour "7" ; GO "GO:0030120; vesicle coat
GO:0006893; Golgi to plasma membrane transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR057C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human BDH ortholog; date=20100217" ; gene "SPBC24C6.08c" ; product "vesicle coat protein, folliculin (predicted)" ;
chromosome2 GeneDB CDS 2333174 2334277 . - . mRNA SPBC24C6.08c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2334276 2334915 . - . mRNA SPBC24C6.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.08c" ; systematic_id "SPBC24C6.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2335262 2337739 . - . mRNA SPBC24C6.09c ; db_xref "SPD:46/46H07" ; systematic_id "SPBC24C6.09c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBC24C6.09c" ; product "phosphoketolase family protein (predicted)" ;
chromosome2 GeneDB CDS 2335262 2337739 . - . mRNA SPBC24C6.09c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 2337740 2337787 . - . mRNA SPBC24C6.09c ; ID "SPBC24C6.09c" ; systematic_id "SPBC24C6.09c" ; note "mRNA from AU006630" ;
chromosome2 GeneDB misc_feature 2337788 2339944 . - . misc_feature unknown_1838 ; note "low complexity gene-free region" ;
chromosome2 GeneDB LTR 2339945 2340297 . - . LTR unknown_1839 ; note "Tf1 type LTR" ;
chromosome2 GeneDB 5'-UTR 2340394 2340669 . + . mRNA SPBC24C6.13 ; db_xref "PMID:21270388" ; systematic_id "SPBC24C6.13" ;
chromosome2 GeneDB CDS_parts 2340670 2341088 . + . mRNA SPBC24C6.13 ; Alias "new16" ; systematic_id "SPBC24C6.13" ; colour "10" ; controlled_curation "term=orthologous to S. cerevisiae YMR244C-A; date=20090721 ||| term=conserved in Metazoa; date=20090721 ||| term=predominantly single copy; date=20090721 ||| term=conserved in Vertebrates; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=conserved in Eukaryotes; date=20090721 ||| term=predominantly uniformly single copy (one to one); date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm" ; gene "SPBC24C6.13" ; primary_name "new16" ; product "conserved eukaryotic protein" ; note "family submitted to Pfam, cytochrome C oxidase subunit 6 annotation needs validating, S. cerevisiae is induced in response to MMS" ;
chromosome2 GeneDB CDS 2340670 2340849 . + . mRNA SPBC24C6.13 ; colour "10" ;
chromosome2 GeneDB CDS 2340996 2341088 . + . mRNA SPBC24C6.13 ; colour "10" ;
chromosome2 GeneDB intron 2340850 2340995 . + . intron unknown_1840 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome2 GeneDB 3'-UTR 2341089 2341774 . + . mRNA SPBC24C6.13 ; db_xref "PMID:21270388" ; systematic_id "SPBC24C6.13" ;
chromosome2 GeneDB 3'-UTR 2341454 2341810 . - . mRNA SPBC24C6.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.10c" ; systematic_id "SPBC24C6.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2341811 2343150 . - . mRNA SPBC24C6.10c ; db_xref "SPD:20/20G03" ; systematic_id "SPBC24C6.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL146W; date=19700101 ||| term=human NCKIPSD ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; colour "7" ; GO "GO:0007010; cytoskeleton organization and biogenesis
GO:0005856; cytoskeleton
GO:0030100; regulation of endocytosis" ; gene "SPBC24C6.10c" ; product "conserved cytoskeletal protein, possible WASp interacting (predicted)" ;
chromosome2 GeneDB CDS 2341811 2342790 . - . mRNA SPBC24C6.10c ; colour "7" ;
chromosome2 GeneDB CDS 2342911 2343000 . - . mRNA SPBC24C6.10c ; colour "7" ;
chromosome2 GeneDB CDS 2343096 2343150 . - . mRNA SPBC24C6.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 2342791 2342811 . - . misc_feature unknown_1841 ; colour "6" ; note "ctaacaaaataaattcaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2342905 2342910 . - . misc_feature unknown_1842 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2343001 2343017 . - . misc_feature unknown_1843 ; colour "6" ; note "ctaacatttggtgacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2343090 2343095 . - . misc_feature unknown_1844 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2343149 2343158 . - . mRNA SPBC24C6.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.10c" ; systematic_id "SPBC24C6.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2343550 2343703 . + . mRNA SPBC24C6.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.11" ; systematic_id "SPBC24C6.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2343704 2344258 . + . mRNA SPBC24C6.11 ; systematic_id "SPBC24C6.11" ; colour "2" ; gene "cwf14 ||| SPBC24C6.11" ; Alias "cwf14" ; db_xref "SPD:05/05G03" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YCR063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf14" ; product "G10 protein" ;
chromosome2 GeneDB CDS 2343704 2343735 . + . mRNA SPBC24C6.11 ; colour "2" ;
chromosome2 GeneDB CDS 2343806 2344185 . + . mRNA SPBC24C6.11 ; colour "2" ;
chromosome2 GeneDB CDS 2344230 2344258 . + . mRNA SPBC24C6.11 ; colour "2" ;
chromosome2 GeneDB misc_feature 2343736 2343741 . + . misc_feature unknown_1845 ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2343792 2343805 . + . misc_feature unknown_1846 ; note "ctaattagctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2344186 2344191 . + . misc_feature unknown_1847 ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2344217 2344229 . + . misc_feature unknown_1848 ; note "ctaatgaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2344259 2345691 . + . mRNA SPBC24C6.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC24C6.11" ; systematic_id "SPBC24C6.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2344368 2344456 . - . mRNA SPBC19G7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.01c" ; systematic_id "SPBC19G7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2344457 2347542 . - . mRNA SPBC19G7.01c ; systematic_id "SPBC19G7.01c" ; colour "2" ; gene "msh2 ||| SPBC24C6.12c ||| SPBC19G7.01c ||| swi8 ||| mut3" ; Alias "msh2" ; db_xref "SPD:38/38A03" ; synonym "swi8 ||| mut3 ||| SPBC24C6.12c" ; GO "GO:0000228; nuclear chromosome
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0032135; DNA insertion or deletion binding
GO:0000403; Y-form DNA binding
GO:0000406; double-strand/single-strand DNA junction binding
GO:0000400; four-way junction DNA binding
GO:0032137; guanine/thymine mispair binding
GO:0000404; loop DNA binding
GO:0032138; single base insertion or deletion binding
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0007534; gene conversion at mating-type locus
GO:0043570; maintenance of DNA repeat elements
GO:0006298; mismatch repair
GO:0006298; mismatch repair
GO:0006298; mismatch repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer, hereditary nonpolyposis colon; date=20060724 ||| term=disease associated, cancer; date=20060724 ||| term=orthologous to S. cerevisiae YOL090W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MSH2 ortholog; date=20100217" ; primary_name "msh2" ; product "MutS protein homolog 2" ;
chromosome2 GeneDB CDS 2344457 2347291 . - . mRNA SPBC19G7.01c ; colour "2" ;
chromosome2 GeneDB CDS 2347386 2347468 . - . mRNA SPBC19G7.01c ; colour "2" ;
chromosome2 GeneDB CDS 2347512 2347542 . - . mRNA SPBC19G7.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 2345659 2345762 . + . misc_feature unknown_1849 ; note "nominal overlap with cosmid SPBC24C6, EM:AL031786 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2345659 2345762 . - . misc_feature unknown_1850 ; note "nominal overlap with cosmid SPBC19G7, EM:AL021839 S.pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2347292 2347308 . - . misc_feature unknown_1851 ; colour "6" ; note "ctaacactgttttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2347380 2347385 . - . misc_feature unknown_1852 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2347469 2347485 . - . misc_feature unknown_1853 ; colour "6" ; note "ctaatattttaaaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2347506 2347511 . - . misc_feature unknown_1854 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2347541 2347731 . - . mRNA SPBC19G7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.01c" ; systematic_id "SPBC19G7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2348108 2348283 . + . mRNA SPBC19G7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.02" ; systematic_id "SPBC19G7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2348284 2349112 . + . mRNA SPBC19G7.02 ; systematic_id "SPBC19G7.02" ; colour "7" ; gene "SPBC19G7.02" ; note "possible N terminal incorrect" ; db_xref "SPD:43/43D03" ; GO "GO:0008696; 4-amino-4-deoxychorismate lyase activity
GO:0008153; para-aminobenzoic acid biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR289W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "4-amino-4-deoxychorismate lyase (predicted)" ;
chromosome2 GeneDB CDS 2348284 2348457 . + . mRNA SPBC19G7.02 ; colour "7" ;
chromosome2 GeneDB CDS 2348505 2348811 . + . mRNA SPBC19G7.02 ; colour "7" ;
chromosome2 GeneDB CDS 2348898 2349112 . + . mRNA SPBC19G7.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 2348458 2348463 . + . misc_feature unknown_1855 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2348487 2348504 . + . misc_feature unknown_1856 ; colour "6" ; note "ttgatctaaacataatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2348812 2348817 . + . misc_feature unknown_1857 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2348880 2348897 . + . misc_feature unknown_1858 ; colour "6" ; note "ttaacctcctttatacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2348960 2349077 . - . mRNA SPBC19G7.03c ; ID "SPBC19G7.03c" ; systematic_id "SPBC19G7.03c" ; note "mRNA from SPAJ2731" ;
chromosome2 GeneDB CDS_parts 2349078 2349435 . - . mRNA SPBC19G7.03c ; systematic_id "SPBC19G7.03c" ; colour "7" ; gene "rps3002 ||| rps30-2 ||| rps30 ||| SPBC19G7.03c" ; Alias "rps3002" ; obsolete_name "ysprs30" ; db_xref "SPD:39/39G07" ; synonym "rps30-2 ||| rps30" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR287C-A and YOR182C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=ncRNA in intron; date=20110201" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis
GO:0042254; ribosome biogenesis" ; primary_name "rps3002" ; product "40S ribosomal protein S30 (predicted)" ;
chromosome2 GeneDB CDS 2349078 2349095 . - . mRNA SPBC19G7.03c ; colour "7" ;
chromosome2 GeneDB CDS 2349219 2349347 . - . mRNA SPBC19G7.03c ; colour "7" ;
chromosome2 GeneDB CDS 2349397 2349435 . - . mRNA SPBC19G7.03c ; colour "7" ;
chromosome2 GeneDB intron 2349096 2349218 . - . intron SPBC19G7.03c ; systematic_id "SPBC19G7.03c" ; note "confirmed intron" ;
chromosome2 GeneDB 3'-UTR 2349113 2349206 . + . mRNA SPBC19G7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.02" ; systematic_id "SPBC19G7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2349348 2349362 . - . misc_feature unknown_1859 ; colour "6" ; note "ttaacattttgtcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2349348 2349396 . - . intron SPBC19G7.03c ; systematic_id "SPBC19G7.03c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2349391 2349396 . - . misc_feature unknown_1860 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome2 GeneDB promoter 2349503 2349510 . - . promoter unknown_1861 ; colour "4" ; note "Homol D box" ;
chromosome2 GeneDB CDS_parts 2349593 2350766 . + . mRNA SPBC19G7.04 ; db_xref "SPD:18/18F03" ; systematic_id "SPBC19G7.04" ; colour "10" ; GO "GO:0003677; DNA binding
GO:0032569; gene-specific transcription from RNA polymerase II promoter
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC19G7.04" ; product "HMG box protein" ;
chromosome2 GeneDB CDS 2349593 2349654 . + . mRNA SPBC19G7.04 ; colour "10" ;
chromosome2 GeneDB CDS 2349697 2350344 . + . mRNA SPBC19G7.04 ; colour "10" ;
chromosome2 GeneDB CDS 2350388 2350766 . + . mRNA SPBC19G7.04 ; colour "10" ;
chromosome2 GeneDB misc_feature 2349655 2349660 . + . misc_feature unknown_1862 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2349683 2349696 . + . misc_feature unknown_1863 ; colour "6" ; note "ataacaatatttag, splice branch and acceptor sequence ||| NON CONSENSUS BRANCH SITE" ;
chromosome2 GeneDB misc_feature 2350345 2350350 . + . misc_feature unknown_1864 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2350375 2350387 . + . misc_feature unknown_1865 ; colour "6" ; note "ctaacctattaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2351022 2351053 . - . mRNA SPBC19G7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.05c" ; systematic_id "SPBC19G7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2351054 2356243 . - . mRNA SPBC19G7.05c ; systematic_id "SPBC19G7.05c" ; colour "2" ; gene "bgs1 ||| cps1 ||| drc1 ||| SPBC19G7.05c" ; Alias "bgs1" ; db_xref "SPD:48/48H01" ; synonym "cps1 ||| drc1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to cyclosporine; allele=cps1-12; db_xref=PMID:9401022; cv=phenotype; date=19700101 ||| term=phenotype, sensitive to papulacandin B; db_xref=PMID:9401022; allele=cps1-12; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, branched; db_xref=PMID:17581129; date=20100712 ||| term=phenotype, septation defects; db_xref=PMID:17581129; date=20100712 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061117 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:11937031; date=19700101 ||| term=orthologous to S. cerevisiae YLR342W and YGR032W and YMR306W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=localization dependent on secretory pathway small GTPase ARF; date=20100308 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:11937031; date=20090213" ; GO "GO:0000148; 1,3-beta-glucan synthase complex
GO:0032153; cell division site
GO:0043187; cell septum surface
GO:0009277; cell wall (sensu Fungi)
GO:0003843; 1,3-beta-glucan synthase activity
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0000747; conjugation with cellular fusion
GO:0031671; primary septum biogenesis
GO:0030476; spore wall assembly (sensu Fungi)
GO:0032878; regulation of establishment or maintenance of cell polarity
GO: SF polarity, and remove parent; regulation of establishment or maintenance of cell polarity resulting in cell shape
GO:0071775; regulation of cell cycle cytokinesis" ; primary_name "bgs1" ; product "1,3-beta-glucan synthase catalytic subunit Bgs1" ; EC_number "2.4.1.34" ;
chromosome2 GeneDB CDS 2351054 2356243 . - . mRNA SPBC19G7.05c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2356242 2357349 . - . mRNA SPBC19G7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.05c" ; systematic_id "SPBC19G7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2359429 2361092 . + . mRNA SPBC19G7.06 ; systematic_id "SPBC19G7.06" ; colour "2" ; note "possibly functional ortholog of YMR043W PMID:15509866" ; db_xref "SPD:34/34H04" ; Alias "mbx1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR043W and YMR042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15509866; date=20090213 ||| term=warning, gene structure updated; cv=warning; date=20071201 ||| term=name description, Mads BoX protein; date=20090729" ; GO "GO:0005667; transcription factor complex
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding
GO:0071775; regulation of cell cycle cytokinesis
GO:0045896; regulation of transcription, mitotic" ; primary_name "mbx1" ; product "MADS-box transcription factor Mbx1" ;
chromosome2 GeneDB CDS 2359429 2359479 . + . mRNA SPBC19G7.06 ; colour "2" ;
chromosome2 GeneDB CDS 2359547 2359693 . + . mRNA SPBC19G7.06 ; colour "2" ;
chromosome2 GeneDB CDS 2359845 2359928 . + . mRNA SPBC19G7.06 ; colour "2" ;
chromosome2 GeneDB CDS 2360001 2361092 . + . mRNA SPBC19G7.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 2359480 2359485 . + . misc_feature unknown_1866 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2359531 2359546 . + . misc_feature unknown_1867 ; colour "6" ; note "ctaacgtaccatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2359694 2359699 . + . misc_feature unknown_1868 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2359826 2359844 . + . misc_feature unknown_1869 ; colour "6" ; note "ttaacatacacctctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2359929 2359934 . + . misc_feature unknown_1870 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2359976 2360000 . + . misc_feature unknown_1871 ; colour "6" ; note "ctaacataatcccttggggagaaag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2361195 2363340 . - . mRNA SPBC19G7.07c ; systematic_id "SPBC19G7.07c" ; colour "7" ; gene "SPBC19G7.07c" ; db_xref "SPD:46/46F02" ; Alias "dmr1" ; GO "GO:0005739; mitochondrion
GO:0000372; Group I intron splicing
GO:0000002; miotochondrial genome maintenance
GO:0000963; mitochondrial RNA processing
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PPR domains; date=19700101 ||| term=orthologous to S. cerevisiae YGR150C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "dmr1" ; product "mitochondrial group I intron splicing factor Dmr1 (predicted)" ;
chromosome2 GeneDB CDS 2361195 2363003 . - . mRNA SPBC19G7.07c ; colour "7" ;
chromosome2 GeneDB CDS 2363086 2363340 . - . mRNA SPBC19G7.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 2363004 2363018 . - . misc_feature unknown_1872 ; colour "6" ; note "ctaacgttagcatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2363080 2363085 . - . misc_feature unknown_1873 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2363339 2363566 . - . mRNA SPBC19G7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.07c" ; systematic_id "SPBC19G7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2363900 2364278 . - . mRNA SPBC19G7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.08c" ; systematic_id "SPBC19G7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2364279 2365730 . - . mRNA SPBC19G7.08c ; systematic_id "SPBC19G7.08c" ; colour "10" ; gene "SPBC19G7.08c" ; Alias "art1" ; db_xref "SPD:23/23D06" ; GO "GO:0005509; calcium ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110" ; primary_name "art1" ; product "arrestin family protein" ; reserved_name "art1" ;
chromosome2 GeneDB CDS 2364279 2365730 . - . mRNA SPBC19G7.08c ; colour "10" ;
chromosome2 GeneDB CDS_parts 2367117 2368823 . + . mRNA SPBC19G7.09 ; systematic_id "SPBC19G7.09" ; colour "2" ; gene "ulp1 ||| SPBC19G7.09" ; Alias "ulp1" ; db_xref "SPD:35/35E03" ; GO "GO:0016926; protein desumoylation
GO:0006997; nuclear organization and biogenesis
GO:0005634; nucleus
GO:0034399; nuclear periphery
GO:0016929; SUMO-specific protease activity
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:11884512; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:11884512; date=20100727 ||| term=target is Pmt3; db_xref=PMID:11884512; date=19700101 ||| term=orthologous to S. cerevisiae YPL020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "ulp1" ; product "SUMO deconjugating enzyme Ulp1" ;
chromosome2 GeneDB CDS 2367117 2368823 . + . mRNA SPBC19G7.09 ; colour "2" ;
chromosome2 GeneDB intron 2367215 2367328 . + . intron SPBC19G7.09 ; systematic_id "SPBC19G7.09" ;
chromosome2 GeneDB 3'-UTR 2368824 2368955 . + . mRNA SPBC19G7.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.09" ; systematic_id "SPBC19G7.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2368905 2369063 . - . mRNA SPBC19G7.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.10c" ; systematic_id "SPBC19G7.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2369064 2371583 . - . mRNA SPBC19G7.10c ; db_xref "SPD:29/29B10" ; systematic_id "SPBC19G7.10c" ; colour "7" ; GO "GO:0000932; cytoplasmic mRNA processing body
GO:0000290; deadenylation-dependent decapping
GO:0006446; regulation of translational initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC19G7.10c" ; product "topoisomerase II-associated deadenylation- dependent mRNA-decapping factor (predicted)" ;
chromosome2 GeneDB CDS 2369064 2369190 . - . mRNA SPBC19G7.10c ; colour "7" ;
chromosome2 GeneDB CDS 2369246 2369416 . - . mRNA SPBC19G7.10c ; colour "7" ;
chromosome2 GeneDB CDS 2369455 2371243 . - . mRNA SPBC19G7.10c ; colour "7" ;
chromosome2 GeneDB CDS 2371351 2371451 . - . mRNA SPBC19G7.10c ; colour "7" ;
chromosome2 GeneDB CDS 2371507 2371583 . - . mRNA SPBC19G7.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 2369191 2369212 . - . misc_feature unknown_1874 ; colour "6" ; note "ttgataacatcattactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2369240 2369245 . - . misc_feature unknown_1875 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2369417 2369428 . - . misc_feature unknown_1876 ; colour "6" ; note "ctaactatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2369449 2369454 . - . misc_feature unknown_1877 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2371244 2371256 . - . misc_feature unknown_1878 ; colour "6" ; note "ctcacaattctag, splice branch and accepto r" ;
chromosome2 GeneDB misc_feature 2371345 2371350 . - . misc_feature unknown_1879 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2371452 2371468 . - . misc_feature unknown_1880 ; colour "6" ; note "ctcacaagtatatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2371501 2371506 . - . misc_feature unknown_1881 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 2372072 2372924 . - . mRNA SPBC19G7.18c ; systematic_id "SPBC19G7.18c" ; colour "8" ; gene "SPBC19G7.18c" ; note "SPBC19G7.12c removed because sequence similarity supports SPBC19G7.18c, 20040914" ; db_xref "SPD:52/52A06" ; synonym "SPBC19G7.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2372072 2372611 . - . mRNA SPBC19G7.18c ; colour "8" ;
chromosome2 GeneDB CDS 2372658 2372728 . - . mRNA SPBC19G7.18c ; colour "8" ;
chromosome2 GeneDB CDS 2372777 2372924 . - . mRNA SPBC19G7.18c ; colour "8" ;
chromosome2 GeneDB 5'-UTR 2372923 2373131 . - . mRNA SPBC19G7.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.18c" ; systematic_id "SPBC19G7.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2373956 2374173 . + . mRNA SPBC19G7.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.13" ; systematic_id "SPBC19G7.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2374174 2375631 . + . mRNA SPBC19G7.13 ; systematic_id "SPBC19G7.13" ; colour "2" ; gene "trf1 ||| SPBC19G7.13" ; Alias "tbf1" ; db_xref "SPD:23/23E08" ; synonym "trf1" ; GO "GO:0003691; double-stranded telomeric DNA binding
GO:0000723; telomere maintenance
GO:0006357; regulation of transcription from RNA poymerase II promoter
GO:0030528; transcription regulator activity
GO:0007093; mitotic cell cycle checkpoint
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0000781; chromosome, telomeric region" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, swollen cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19074598; date=20081217 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19074598; date=20081217 ||| term=phenotype, cytokinesis defects, misplaced contractile ring; qualifier=deletion; db_xref=PMID:19074598; date=20081217 ||| term=Myb family; date=19700101 ||| term=subunit composition, homodimer; cv=subunit_composition; date=19700101 ||| term=orthologous to S. cerevisiae YPL128C; date=19700101 ||| term=human TRF1 homolog; evidence=ISS; db_xref=PMID:17977837; date=20071107 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17977837; date=20071107 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=telobox motif; evidence=ISS; date=20081217 ||| term=complementation, functionally complemented by P. carnii Trb1; db_xref=PMID:19074598; cv=complementation; date=20081217 ||| term=species distribution, conserved in Eukaryotes only; date=20090424 ||| term=species distribution, conserved in Metazoa; date=20090424 ||| term=species distribution, conserved in Vertebrates; date=20090424 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; primary_name "tbf1" ; product "DNA binding factor Trf1" ;
chromosome2 GeneDB CDS 2374174 2375631 . + . mRNA SPBC19G7.13 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2375632 2375996 . + . mRNA SPBC19G7.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.13" ; systematic_id "SPBC19G7.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2375740 2377064 . - . mRNA SPBC19G7.14c ; systematic_id "SPBC19G7.14c" ; colour "7" ; gene "SPBC19G7.14c ||| cog5" ; Alias "cog5" ; db_xref "SPD:23/23A08" ; GO "GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cog5" ; product "Golgi transport complex subunit Cog5 (predicted)" ;
chromosome2 GeneDB CDS 2375740 2376447 . - . mRNA SPBC19G7.14c ; colour "7" ;
chromosome2 GeneDB CDS 2376488 2376560 . - . mRNA SPBC19G7.14c ; colour "7" ;
chromosome2 GeneDB CDS 2376610 2377064 . - . mRNA SPBC19G7.14c ; colour "7" ;
chromosome2 GeneDB misc_feature 2376448 2376460 . - . misc_feature unknown_1882 ; colour "6" ; note "ctaattattgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2376482 2376487 . - . misc_feature unknown_1883 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2376561 2376574 . - . misc_feature unknown_1884 ; colour "6" ; note "ctaacaaattcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2376604 2376609 . - . misc_feature unknown_1885 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2377063 2377319 . - . mRNA SPBC19G7.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.14c" ; systematic_id "SPBC19G7.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2377980 2378034 . + . mRNA SPBC19G7.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.15" ; systematic_id "SPBC19G7.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2378035 2379290 . + . mRNA SPBC19G7.15 ; systematic_id "SPBC19G7.15" ; colour "2" ; gene "nup44 ||| SPBC19G7.15" ; Alias "nup44" ; db_xref "SPD:20/20A07" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0007346; regulation of mitotic cell cycle
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:15116432; date=20100727 ||| term=FG repeat; date=19700101 ||| term=orthologous to S. cerevisiae YGR119C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nup44" ; product "nucleoporin Nup44" ;
chromosome2 GeneDB CDS 2378035 2378050 . + . mRNA SPBC19G7.15 ; colour "2" ;
chromosome2 GeneDB CDS 2378095 2379290 . + . mRNA SPBC19G7.15 ; colour "2" ;
chromosome2 GeneDB misc_feature 2378051 2378056 . + . misc_feature unknown_1886 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2378082 2378094 . + . misc_feature unknown_1887 ; colour "6" ; note "ctaacgactgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2379291 2379572 . + . mRNA SPBC19G7.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.15" ; systematic_id "SPBC19G7.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 2380161 2380508 . + . LTR unknown_1888 ; colour "4" ; note "tf2 type ltr" ;
chromosome2 GeneDB 5'-UTR 2380610 2380662 . + . mRNA SPBC19G7.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.16" ; systematic_id "SPBC19G7.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2380663 2381949 . + . mRNA SPBC19G7.16 ; systematic_id "SPBC19G7.16" ; colour "2" ; gene "iws1 ||| SPBC19G7.16" ; Alias "iws1" ; db_xref "SPD:22/22C10" ; GO "GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0008023; transcription elongation factor complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR133C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "iws1" ; product "transcription elongation factor complex subunit Iws1 (predicted)" ;
chromosome2 GeneDB CDS 2380663 2381949 . + . mRNA SPBC19G7.16 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2381950 2382156 . + . mRNA SPBC19G7.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.16" ; systematic_id "SPBC19G7.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2382425 2382464 . + . mRNA SPBC19G7.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.17" ; systematic_id "SPBC19G7.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2382465 2384277 . + . mRNA SPBC19G7.17 ; systematic_id "SPBC19G7.17" ; colour "7" ; gene "SPBC19G7.17 ||| SPBC36B7.01" ; db_xref "SPD:33/33D11" ; synonym "SPBC36B7.01" ; GO "GO:0005784; translocon complex
GO:0008565; protein transporter activity
GO:0006616; SRP-dependent cotranslational protein targeting to membrane, translocation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR283C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081116" ; product "translocon subunit Sec61 homolog (predicted)" ;
chromosome2 GeneDB CDS 2382465 2382474 . + . mRNA SPBC19G7.17 ; colour "7" ;
chromosome2 GeneDB CDS 2382526 2382593 . + . mRNA SPBC19G7.17 ; colour "7" ;
chromosome2 GeneDB CDS 2382663 2382775 . + . mRNA SPBC19G7.17 ; colour "7" ;
chromosome2 GeneDB CDS 2382820 2382852 . + . mRNA SPBC19G7.17 ; colour "7" ;
chromosome2 GeneDB CDS 2383028 2383161 . + . mRNA SPBC19G7.17 ; colour "7" ;
chromosome2 GeneDB CDS 2383208 2384277 . + . mRNA SPBC19G7.17 ; colour "7" ;
chromosome2 GeneDB misc_feature 2382475 2382480 . + . misc_feature unknown_1889 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2382509 2382525 . + . misc_feature unknown_1890 ; colour "6" ; note "ctaatgtccttatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2382594 2382599 . + . misc_feature unknown_1891 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2382649 2382662 . + . misc_feature unknown_1892 ; colour "6" ; note "ctgatatatcgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2382776 2382781 . + . misc_feature unknown_1893 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2382807 2382819 . + . misc_feature unknown_1894 ; colour "6" ; note "ctaatcaaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2382853 2382858 . + . misc_feature unknown_1895 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2383013 2383027 . + . misc_feature unknown_1896 ; colour "6" ; note "ctaattaactttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2383162 2383167 . + . misc_feature unknown_1897 ; colour "6" ; note "gttcgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2383191 2383207 . + . misc_feature unknown_1898 ; colour "6" ; note "ctaacgtctcttaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2383265 2383385 . + . misc_feature unknown_1899 ; note "nominal overlap with SPBC19G7 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 2384278 2384577 . + . mRNA SPBC19G7.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19G7.17" ; systematic_id "SPBC19G7.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2385068 2385438 . + . mRNA SPBC36B7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36B7.02" ; systematic_id "SPBC36B7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2385439 2386500 . + . mRNA SPBC36B7.02 ; db_xref "SPD:32/32D08" ; systematic_id "SPBC36B7.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC36B7.02" ; product "Svf1 family protein Svf2" ;
chromosome2 GeneDB CDS 2385439 2386500 . + . mRNA SPBC36B7.02 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 2386501 2386884 . + . mRNA SPBC36B7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36B7.02" ; systematic_id "SPBC36B7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2387093 2389038 . + . mRNA SPBC36B7.03 ; systematic_id "SPBC36B7.03" ; colour "2" ; db_xref "SPD:33/33E11" ; Alias "sec63" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR254C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257547; cv=pt_mod; date=20100125" ; GO "GO:0030544; Hsp70 protein binding
GO:0006620; posttranslational protein targeting to membrane
GO:0005789; endoplasmic reticulum membrane
GO:0006614; SRP-dependent cotranslational protein targeting to membrane
GO:0031207; Sec62/Sec63 complex
GO:0005938; cell cortex
GO:0005635; nuclear envelope" ; primary_name "sec63" ; product "ER protein translocation subcomplex subunit Sec63 (predicted)" ;
chromosome2 GeneDB CDS 2387093 2387207 . + . mRNA SPBC36B7.03 ; colour "2" ;
chromosome2 GeneDB CDS 2387258 2387348 . + . mRNA SPBC36B7.03 ; colour "2" ;
chromosome2 GeneDB CDS 2387409 2389038 . + . mRNA SPBC36B7.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 2387208 2387213 . + . misc_feature unknown_1900 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2387238 2387257 . + . misc_feature unknown_1901 ; colour "6" ; note "ctaatatggtgaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2387349 2387354 . + . misc_feature unknown_1902 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2387390 2387408 . + . misc_feature unknown_1903 ; colour "6" ; note "ttaatttttattattatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2389039 2389305 . + . mRNA SPBC36B7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36B7.03" ; systematic_id "SPBC36B7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2389581 2389666 . + . mRNA SPBC36B7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36B7.04" ; systematic_id "SPBC36B7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2389667 2390866 . + . mRNA SPBC36B7.04 ; db_xref "SPD:32/32F05" ; systematic_id "SPBC36B7.04" ; colour "7" ; GO "GO:0006400; tRNA modification
GO:0017150; tRNA dihydrouridine synthase activity
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML080W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC36B7.04" ; product "tRNA dihydrouridine synthase Dus1 (predicted)" ;
chromosome2 GeneDB CDS 2389667 2390866 . + . mRNA SPBC36B7.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2390867 2390959 . + . mRNA SPBC36B7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36B7.04" ; systematic_id "SPBC36B7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2391060 2391257 . - . mRNA SPBC36B7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36B7.05c" ; systematic_id "SPBC36B7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2391258 2392097 . - . mRNA SPBC36B7.05c ; db_xref "SPD:32/32A02" ; systematic_id "SPBC36B7.05c" ; colour "10" ; GO "GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0005770; late endosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20070129 ||| term=zinc finger protein; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=orthologous to S. cerevisiae YDR313C; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=20080528 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC36B7.05c" ; product "ubiquitin-protein ligase E/phosphatidylinositol(3)-phosphate binding protein (predicted)" ;
chromosome2 GeneDB CDS 2391258 2392097 . - . mRNA SPBC36B7.05c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 2392096 2392114 . - . mRNA SPBC36B7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36B7.05c" ; systematic_id "SPBC36B7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2392551 2393103 . - . mRNA SPBC36B7.06c ; systematic_id "SPBC36B7.06c" ; colour "8" ; gene "SPBC36B7.06c ||| mug20" ; db_xref "SPD:31/31E09" ; Alias "mug20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug20" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2392551 2392926 . - . mRNA SPBC36B7.06c ; colour "8" ;
chromosome2 GeneDB CDS 2392970 2393103 . - . mRNA SPBC36B7.06c ; colour "8" ;
chromosome2 GeneDB misc_feature 2392927 2392943 . - . misc_feature unknown_1904 ; colour "6" ; note "ttgacccaacaattcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2392964 2392969 . - . misc_feature unknown_1905 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2393647 2393673 . + . mRNA SPBC36B7.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36B7.07" ; systematic_id "SPBC36B7.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2393674 2394442 . + . mRNA SPBC36B7.07 ; systematic_id "SPBC36B7.07" ; colour "7" ; gene "tlg1 ||| SPBC36B7.07" ; Alias "tlg1" ; db_xref "SPD:31/31H10" ; GO "GO:0000139; Golgi membrane
GO:0005484; SNAP receptor activity
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR468C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tlg1" ; product "SNARE Tgl1 (predicted)" ;
chromosome2 GeneDB CDS 2393674 2393702 . + . mRNA SPBC36B7.07 ; colour "7" ;
chromosome2 GeneDB CDS 2393794 2394442 . + . mRNA SPBC36B7.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 2393703 2393708 . + . misc_feature unknown_1906 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2393772 2393793 . + . misc_feature unknown_1907 ; colour "6" ; note "ctgacatttattcgaaatatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2394409 2394574 . - . mRNA SPBC36B7.08c ; ID "SPBC36B7.08c" ; systematic_id "SPBC36B7.08c" ; note "mRNA from AU011814" ;
chromosome2 GeneDB CDS_parts 2394575 2395561 . - . mRNA SPBC36B7.08c ; db_xref "SPD:32/32C02" ; systematic_id "SPBC36B7.08c" ; colour "7" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0042393; histone binding
GO:0006334; nucleosome assembly
GO:0010698; acetyltransferase activator activity
GO:0035066; positive regulation of histone acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL246W; date=19700101 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SET ortholog; date=20100208 ||| term=disease associated, cancer; date=20100217" ; gene "SPBC36B7.08c" ; product "nucleosome assembly protein (predicted)" ;
chromosome2 GeneDB CDS 2394575 2394609 . - . mRNA SPBC36B7.08c ; colour "7" ;
chromosome2 GeneDB CDS 2394703 2395218 . - . mRNA SPBC36B7.08c ; colour "7" ;
chromosome2 GeneDB CDS 2395288 2395398 . - . mRNA SPBC36B7.08c ; colour "7" ;
chromosome2 GeneDB CDS 2395489 2395561 . - . mRNA SPBC36B7.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 2394610 2394627 . - . misc_feature unknown_1908 ; colour "6" ; note "ctaacacaaaaatcgcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2394610 2394702 . - . intron SPBC36B7.08c ; systematic_id "SPBC36B7.08c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2394697 2394702 . - . misc_feature unknown_1909 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2395219 2395236 . - . misc_feature unknown_1910 ; colour "6" ; note "ctaattaagttatttcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2395219 2395287 . - . intron SPBC36B7.08c ; systematic_id "SPBC36B7.08c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2395282 2395287 . - . misc_feature unknown_1911 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2395399 2395418 . - . misc_feature unknown_1912 ; colour "6" ; note "ctaatgtatcttggtgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2395483 2395488 . - . misc_feature unknown_1913 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2395560 2395575 . - . mRNA SPBC36B7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36B7.08c" ; systematic_id "SPBC36B7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2396233 2396674 . + . mRNA SPBC36B7.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC36B7.09" ; systematic_id "SPBC36B7.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2396675 2401454 . + . mRNA SPBC36B7.09 ; systematic_id "SPBC36B7.09" ; colour "2" ; db_xref "SPD:50/50B01" ; Alias "gcn2" ; synonym "ppk28 ||| SPBP18G5.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RWD domain; date=19700101 ||| term=orthologous to S. cerevisiae YDR283C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18502752; date=20090110 ||| term=target is Tif211; qualifier=phosphorylates; residue=Ser52; evidence=IDA; db_xref=PMID:19033384; date=20091204" ; GO "GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0005524; ATP binding
GO:0004694; eukaryotic translation initiation factor 2alpha kinase activity
GO:0042803; protein homodimerization activity
GO:0006468; protein amino acid phosphorylation
GO:0043561; regulation of translational initiation in response to osmotic stress
GO:0031575; G1/S transition checkpoint
GO:0071263; negative regulation of translational initiation in response to nutrient starvation" ; primary_name "gcn2" ; product "eIF2 alpha kinase Gcn2" ;
chromosome2 GeneDB CDS 2396675 2396791 . + . mRNA SPBC36B7.09 ; colour "2" ;
chromosome2 GeneDB CDS 2396841 2401454 . + . mRNA SPBC36B7.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 2396792 2396797 . + . misc_feature unknown_1914 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB intron 2396792 2396840 . + . intron SPBC36B7.09 ; systematic_id "SPBC36B7.09" ; note "confirmed by mRNA, AY705913" ;
chromosome2 GeneDB misc_feature 2396823 2396840 . + . misc_feature unknown_1915 ; colour "6" ; note "ctaacaatggtatcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2399187 2399433 . + . misc_feature unknown_1916 ; note "nominal overlap with cosmid c36B7" ;
chromosome2 GeneDB 5'-UTR 2401736 2401752 . + . mRNA SPBP18G5.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP18G5.02" ; systematic_id "SPBP18G5.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2401753 2403394 . + . mRNA SPBP18G5.02 ; db_xref "KEGG:MAP00561; ||| SPD:49/49A11" ; systematic_id "SPBP18G5.02" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006655; phosphatidylglycerol biosynthesis
GO:0046168; glycerol-3-phosphate catabolism
GO:0008444; CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0005739; mitochondrion" ; gene "SPBP18G5.02" ; product "CDP-diacylglycerol-glycerol-3-phosphate3- phosphat idyltransferase (predicted)" ; EC_number "2.7.8.5" ;
chromosome2 GeneDB CDS 2401753 2402237 . + . mRNA SPBP18G5.02 ; colour "7" ;
chromosome2 GeneDB CDS 2402275 2403394 . + . mRNA SPBP18G5.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 2402238 2402243 . + . misc_feature unknown_1917 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2402264 2402274 . + . misc_feature unknown_1918 ; colour "6" ; note "ctaacgaatag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 2403548 2403580 . + . mRNA SPBP18G5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP18G5.03" ; systematic_id "SPBP18G5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2403581 2404915 . + . mRNA SPBP18G5.03 ; systematic_id "SPBP18G5.03" ; colour "2" ; gene "SPBP18G5.03 ||| toc1" ; Alias "toc1" ; db_xref "SPD:50/50F01" ; GO "GO:0031931; TORC 1 complex
GO:0031929; TOR signaling pathway" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "toc1" ; product "Tor complex Tor2 interacting protein 1" ;
chromosome2 GeneDB CDS 2403581 2403703 . + . mRNA SPBP18G5.03 ; colour "2" ;
chromosome2 GeneDB CDS 2403746 2404915 . + . mRNA SPBP18G5.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 2403704 2403709 . + . misc_feature unknown_1919 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2403734 2403745 . + . misc_feature unknown_1920 ; colour "6" ; note "ctaattcaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2404916 2405039 . + . mRNA SPBP18G5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP18G5.03" ; systematic_id "SPBP18G5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2405088 2405286 . + . misc_feature unknown_1921 ; note "nominal overlap with SPBC29C10 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 2405319 2405503 . - . mRNA SPBC1921.01c ; ID "SPBC1921.01c" ; systematic_id "SPBC1921.01c" ; note "mRNA from AU008572" ;
chromosome2 GeneDB CDS_parts 2405504 2405961 . - . mRNA SPBC1921.01c ; systematic_id "SPBC1921.01c" ; colour "7" ; gene "rpl3701 ||| rpl37-1 ||| rpl37 ||| SPBC1921.01c" ; Alias "rpl35b" ; obsolete_name "SPBC29C10.01c ||| rpl3701" ; db_xref "SPD:39/39H01" ; synonym "rpl37-1 ||| rpl37" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0019843; rRNA binding
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR234C and YPL143W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl35b" ; product "60S ribosomal protein L35a (predicted)" ;
chromosome2 GeneDB CDS 2405504 2405621 . - . mRNA SPBC1921.01c ; colour "7" ;
chromosome2 GeneDB CDS 2405753 2405961 . - . mRNA SPBC1921.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 2405622 2405636 . - . misc_feature unknown_1922 ; colour "6" ; note "ctaattacgttttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2405622 2405752 . - . intron SPBC1921.01c ; systematic_id "SPBC1921.01c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2405747 2405752 . - . misc_feature unknown_1923 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2405774 2405874 . + . misc_feature unknown_1924 ; note "nominal overlap with cosmid SPBC1921 AL122033 S.pombe chromosome II" ;
chromosome2 GeneDB 5'-UTR 2405960 2405969 . - . mRNA SPBC1921.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1921.01c" ; systematic_id "SPBC1921.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2406832 2408102 . + . mRNA SPBC1921.02 ; systematic_id "SPBC1921.02" ; colour "2" ; gene "rad60 ||| SPBC1921.02" ; note "orthology with Rad60, pers. comm. Charly Chahwan" ; Alias "rad60" ; db_xref "SPD:20/20D02" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031297; collapsed replication fork processing
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0006302; double-strand break repair
GO:0006302; double-strand break repair
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cut; qualifier=low_penetrance|deletion; db_xref=PMID:11971984; date=20100802 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:11971984; date=20100802 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=localization, undergoes nucleocytoplasmic shuttling; cv=localization; date=20080104 ||| term=orthologous to S. cerevisiae YDR363W; db_xref=PMID:12897162; date=20080729 ||| term=ubiquitin family protein; date=20080829 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, sumoylated; cv=pt_mod; date=20071123" ; primary_name "rad60" ; product "DNA repair protein Rad60" ;
chromosome2 GeneDB CDS 2406832 2406934 . + . mRNA SPBC1921.02 ; colour "2" ;
chromosome2 GeneDB CDS 2406985 2408102 . + . mRNA SPBC1921.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 2406935 2406940 . + . misc_feature unknown_1925 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2406970 2406984 . + . misc_feature unknown_1926 ; colour "6" ; note "cttacaacattctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2408103 2408230 . + . mRNA SPBC1921.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1921.02" ; systematic_id "SPBC1921.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2408230 2408303 . - . mRNA SPBC1921.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1921.03c" ; systematic_id "SPBC1921.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2408304 2410094 . - . mRNA SPBC1921.03c ; systematic_id "SPBC1921.03c" ; colour "2" ; gene "mex67 ||| SPBC1921.03c" ; Alias "mex67" ; db_xref "SPD:33/33D08" ; GO "GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0042272; nuclear RNA export factor complex
GO:0000055; ribosomal large subunit export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human NXF1 ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11073978; date=19700101 ||| term=orthologous to S. cerevisiae YPL169C; date=19700101 ||| term=protein sequence feature, NES; cv=sequence_feature; db_xref=PMID:14963046; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mex67" ; product "mRNA export receptor, Tap, nucleoporin Mex67" ;
chromosome2 GeneDB CDS 2408304 2410094 . - . mRNA SPBC1921.03c ; colour "2" ;
chromosome2 GeneDB CDS_parts 2411051 2411404 . - . mRNA SPBC1921.04c ; db_xref "SPD:02/02C12" ; systematic_id "SPBC1921.04c" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, opposite strand to sno20; cv=warning; date=20100119" ; colour "6" ; gene "SPBC1921.04c" ; product "dubious" ;
chromosome2 GeneDB CDS 2411051 2411404 . - . mRNA SPBC1921.04c ; colour "6" ;
chromosome2 GeneDB snoRNA 2411190 2411361 . + . snoRNA SPSNORNA.34 ; systematic_id "SPSNORNA.34" ; gene "SPSNORNA.34 ||| sno20" ; db_xref "EMBL:AJ577641 ||| EMBL:AJ632004 ||| PMID:15716270" ; Alias "sno20" ; synonym "snR35" ; controlled_curation "term=orthologous to S. cerevisiae snR35; date=20070104" ; primary_name "sno20" ; product "20 small nucleolar RNA" ;
chromosome2 GeneDB 5'-UTR 2413011 2413506 . + . mRNA SPBC1921.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1921.05" ; systematic_id "SPBC1921.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2413507 2416155 . + . mRNA SPBC1921.05 ; systematic_id "SPBC1921.05" ; colour "7" ; gene "SPBC1921.05 ||| ape2" ; Alias "ape2" ; obsolete_name "ape1" ; db_xref "SPD:38/38G07" ; GO "GO:0004177; aminopeptidase activity
GO:0006508; proteolysis
GO:0044248; cellular catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL157W and YHR047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "ape2" ; product "aminopeptidase Ape2 (predicted)" ; EC_number "3.4.11.-" ;
chromosome2 GeneDB CDS 2413507 2416155 . + . mRNA SPBC1921.05 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2416156 2416307 . + . mRNA SPBC1921.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1921.05" ; systematic_id "SPBC1921.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2417024 2417165 . - . mRNA SPBC1921.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1921.06c" ; systematic_id "SPBC1921.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2417166 2418302 . - . mRNA SPBC1921.06c ; systematic_id "SPBC1921.06c" ; colour "2" ; db_xref "SPD:17/17H09" ; Alias "pvg3" ; synonym "mug49" ; GO "GO:0051072; 4,6-pyruvylated galactose residue biosynthesis
cell wall biosynthesis (sensu Fungi); GO:0009272; GO:0009272
GO:0046919; pyruvyltransferase activity
; Golgi apparatus
GO:0047220; galactosylxylosylprotein 3-beta- galactosyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20100120 ||| term=species distribution, conserved in Vertebrates; date=20100120 ||| term=species distribution, conserved in Metazoa; date=20100120 ||| term=species distribution, conserved in Eukaryotes; date=20100120 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100120" ; primary_name "pvg3" ; product "galactosylxylosylprotein 3-beta- galactosyltransferase Pvg1 (predicted)" ; EC_number "2.4.1.34" ;
chromosome2 GeneDB CDS 2417166 2418302 . - . mRNA SPBC1921.06c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2418301 2418459 . - . mRNA SPBC1921.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1921.06c" ; systematic_id "SPBC1921.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2419059 2419145 . - . mRNA SPBC1921.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1921.07c" ; systematic_id "SPBC1921.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2419146 2419981 . - . mRNA SPBC1921.07c ; systematic_id "SPBC1921.07c" ; colour "2" ; gene "SPBC1921.07c ||| SPBC21D10.13 ||| sgf29" ; Alias "sgf29" ; db_xref "SPD:10/10H04" ; synonym "SPBC21D10.13" ; GO "GO:0016573; histone acetylation
GO:0006366; transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL010C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sgf29" ; product "SAGA complex subunit Sgf29" ;
chromosome2 GeneDB CDS 2419146 2419431 . - . mRNA SPBC1921.07c ; colour "2" ;
chromosome2 GeneDB CDS 2419533 2419981 . - . mRNA SPBC1921.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 2419415 2419598 . + . misc_feature unknown_1927 ; note "nominal overlap with cosmid SPBC1921, EM:AL122033 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2419415 2419598 . - . misc_feature unknown_1928 ; note "nominal overlap with cosmid SPBC21D10, EM:AL031536 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2419432 2419446 . - . misc_feature unknown_1929 ; colour "6" ; note "ttaacaaaaccatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2419527 2419532 . - . misc_feature unknown_1930 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2419980 2420046 . - . mRNA SPBC1921.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1921.07c" ; systematic_id "SPBC1921.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2420382 2420789 . - . mRNA SPBC21D10.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21D10.12" ; systematic_id "SPBC21D10.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2420790 2422258 . - . mRNA SPBC21D10.12 ; systematic_id "SPBC21D10.12" ; colour "2" ; gene "hob1 ||| SPBC21D10.12" ; Alias "hob1" ; db_xref "SPD:23/23F06" ; GO "GO:0051285; cell cortex of cell tip
GO:0031097; medial ring
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0006348; chromatin silencing at telomere
GO:0007163; establishment and/or maintenance of cell polarity
GO:0007346; regulation of mitotic cell cycle
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0033554; cellular response to stress
GO:0000723; telomere maintenance
GO:0000723; telomere maintenance
GO:0051020; GTPase-binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BAR domain; cv=protein_family; date=20060913 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12569356; date=20060913 ||| term=complementation, functionally complemented by human BIN1; db_xref=PMID:12569356; cv=complementation; date=19700101 ||| term=orthologous to S. cerevisiae YDR388W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "hob1" ; product "BAR adaptor protein Hob1" ;
chromosome2 GeneDB CDS 2420790 2420858 . - . mRNA SPBC21D10.12 ; colour "2" ;
chromosome2 GeneDB CDS 2420927 2422258 . - . mRNA SPBC21D10.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 2420859 2420874 . - . misc_feature unknown_1931 ; colour "6" ; note "ctaatatatattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2420921 2420926 . - . misc_feature unknown_1932 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2422691 2422768 . + . mRNA SPBC21D10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21D10.11c" ; systematic_id "SPBC21D10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2422769 2424265 . + . mRNA SPBC21D10.11c ; systematic_id "SPBC21D10.11c" ; colour "7" ; gene "nfs1 ||| SPBC21D10.11c" ; Alias "nfs1" ; db_xref "SPD:24/24C05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target of Icp55; qualifier=predicted; evidence=ISS; date=20090903" ; GO "GO:0005759; mitochondrial matrix
GO:0016226; iron-sulfur cluster assembly
GO:0034227; tRNA thio-modification
GO:0031071; cysteine desulfurase activity
GO:0002098; tRNA wobble uridine modification
GO:0006879; cellular iron ion homeostasis" ; primary_name "nfs1" ; product "mitochondrial cysteine desulfurase Nfs1 (predicted)" ; EC_number "4.4.1.-" ;
chromosome2 GeneDB CDS 2422769 2424265 . + . mRNA SPBC21D10.11c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2424266 2424395 . + . mRNA SPBC21D10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21D10.11c" ; systematic_id "SPBC21D10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2424502 2424573 . - . mRNA SPBC21D10.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21D10.10" ; systematic_id "SPBC21D10.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2424574 2425473 . - . mRNA SPBC21D10.10 ; systematic_id "SPBC21D10.10" ; colour "2" ; gene "SPBC21D10.10 ||| bdc1" ; Alias "bdc1" ; db_xref "SPD:12/12D04" ; GO "GO:0006338; chromatin remodeling
GO:0035267; NuA4 histone acetyltransferase complex
GO:0016573; histone acetylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bdc1" ; product "bromodomain containing protein 1, Bdc1" ;
chromosome2 GeneDB CDS 2424574 2425473 . - . mRNA SPBC21D10.10 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2425472 2425499 . - . mRNA SPBC21D10.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21D10.10" ; systematic_id "SPBC21D10.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 2425971 2426336 . + . LTR unknown_1933 ; colour "4" ; note "tf2 type LTR" ;
chromosome2 GeneDB 5'-UTR 2426542 2426566 . + . mRNA SPBC21D10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21D10.09c" ; systematic_id "SPBC21D10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2426567 2431588 . + . mRNA SPBC21D10.09c ; db_xref "SPD:31/31A12" ; systematic_id "SPBC21D10.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YMR247C; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=20080528 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006342; chromatin silencing
GO:0016567; protein ubiquitination" ; gene "SPBC21D10.09c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB CDS 2426567 2426595 . + . mRNA SPBC21D10.09c ; colour "7" ;
chromosome2 GeneDB CDS 2426785 2431588 . + . mRNA SPBC21D10.09c ; colour "7" ;
chromosome2 GeneDB misc_feature 2426596 2426601 . + . misc_feature unknown_1934 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2426770 2426784 . + . misc_feature unknown_1935 ; colour "6" ; note "ctaatctctttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_RNA 2431127 2431835 . - . misc_RNA SPNCRNA.572 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.572" ; synonym "SPNG2AF37" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB 3'-UTR 2431589 2431709 . + . mRNA SPBC21D10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21D10.09c" ; systematic_id "SPBC21D10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2432142 2433025 . + . mRNA SPBC21D10.08c ; db_xref "SPD:43/43E05" ; systematic_id "SPBC21D10.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC21D10.08c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2432142 2432227 . + . mRNA SPBC21D10.08c ; colour "8" ;
chromosome2 GeneDB CDS 2432278 2433025 . + . mRNA SPBC21D10.08c ; colour "8" ;
chromosome2 GeneDB misc_feature 2432228 2432233 . + . misc_feature unknown_1936 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2432265 2432277 . + . misc_feature unknown_1937 ; colour "6" ; note "ctaacctgcaaag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2433110 2433482 . - . mRNA SPBC21D10.07 ; systematic_id "SPBC21D10.07" ; colour "7" ; gene "SPBC21D10.07 ||| cmc1" ; Alias "cmc1" ; db_xref "SPD:02/02F04" ; GO "GO:0031314; extrinsic to mitochondrial inner membrane
GO:0005507; copper ion binding
GO:0033617; mitochondrial respiratory chain complex IV assembly
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL059C-A and YKL137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cmc1" ; product "mitochondrial inner membrane protein involved in cytochrome oxidase biogenesis Cmc1 (predicted)" ;
chromosome2 GeneDB CDS 2433110 2433280 . - . mRNA SPBC21D10.07 ; colour "7" ;
chromosome2 GeneDB CDS 2433339 2433482 . - . mRNA SPBC21D10.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 2433281 2433302 . - . misc_feature unknown_1938 ; colour "6" ; note "ttaacgaaattatgaaataaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2433333 2433338 . - . misc_feature unknown_1939 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_RNA 2433865 2434169 . - . misc_RNA SPNCRNA.107 ; db_xref "EMBL:AU012621" ; systematic_id "SPNCRNA.107" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU012621; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU012621; date=20050412" ; gene "SPNCRNA.107" ; product "non-coding RNA (predicted)" ; note "identity to dbj|AU012621|AU012621 Schizosaccharomyce s pombe cDNA, clone spc07050 but no gene predicted in this region - putative RNA" ;
chromosome2 GeneDB tRNA 2434303 2434374 . - . tRNA SPBTRNAMET.06 ; systematic_id "SPBTRNAMET.06" ; GO "GO:0005737; cytoplasm
GO:0006412; translation
GO:0033425; CAT codon-amino acid adaptor activity" ; gene "SPBTRNAMET.06" ; product "tRNA Methionine" ; note "tRNA Met anticodon CAT" ;
chromosome2 GeneDB CDS_parts 2435636 2438482 . + . mRNA SPBC21D10.06c ; systematic_id "SPBC21D10.06c" ; colour "2" ; gene "map4 ||| SPBC21D10.06c" ; note "Map4 in GeneDB contains an array of 5 repeats. In PMID:16857197 9 repeats are reported and this number is the correct number of repeats and will be updated via an insertion into the contig sequence shortly" ; Alias "map4" ; db_xref "SPD:47/47C09" ; GO "GO:0009986; cell surface
GO:0005618; cell wall
GO:0010339; external side of cell wall
GO:0070263; external side of fungal-type cell wall
GO:0043332; mating projection tip
GO:0050839; cell adhesion molecule binding
GO:0000752; agglutination during conjugation with cellular fusion
GO:0007155; cell adhesion
GO:0000755; cytogamy
GO:0000749; response to pheromone during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, cell morphology, shmoos with long tips; qualifier=deletion; cv=phenotype; db_xref=PMID:16857197; date=20060804 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060804 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20060804 ||| term=misc, required in h+ but not in h-cells; db_xref=PMID:16857197; date=20060804 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=DIPSY domain; date=20081212 ||| term=modification, glycosylated; evidence=ISS; qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, conserved in Fungi only; date=20091216 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091216" ; primary_name "map4" ; product "cell surface agglutination protein Map4" ;
chromosome2 GeneDB CDS 2435636 2438482 . + . mRNA SPBC21D10.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 2437343 2438050 . + . misc_feature unknown_1940 ; note "PCR product for sequence verification" ;
chromosome2 GeneDB 5'-UTR 2439029 2439121 . + . mRNA SPBC21D10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21D10.05c" ; systematic_id "SPBC21D10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2439122 2441134 . + . mRNA SPBC21D10.05c ; systematic_id "SPBC21D10.05c" ; colour "2" ; gene "ucp3 ||| soc2 ||| SPBC21D10.05c" ; Alias "ucp3" ; db_xref "SPD:37/37B10" ; synonym "soc2" ; GO "GO:0030479; actin cortical patch
GO:0008060; ARF GTPase activator activity
GO:0031593; polyubiquitin binding
GO:0043130; ubiquitin binding
GO:0006897; endocytosis
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL181W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, Suppressor Of Cdc2; db_xref=PMID:17072883; date=20100629 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "ucp3" ; product "GTPase activating protein Ucp3 (predicted)" ;
chromosome2 GeneDB CDS 2439122 2439236 . + . mRNA SPBC21D10.05c ; colour "2" ;
chromosome2 GeneDB CDS 2439280 2439386 . + . mRNA SPBC21D10.05c ; colour "2" ;
chromosome2 GeneDB CDS 2439456 2439550 . + . mRNA SPBC21D10.05c ; colour "2" ;
chromosome2 GeneDB CDS 2439646 2441134 . + . mRNA SPBC21D10.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 2439237 2439242 . + . misc_feature unknown_1941 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2439268 2439279 . + . misc_feature unknown_1942 ; colour "6" ; note "ctgactgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2439387 2439392 . + . misc_feature unknown_1943 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2439443 2439455 . + . misc_feature unknown_1944 ; colour "6" ; note "ctaacgagtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2439551 2439556 . + . misc_feature unknown_1945 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2439624 2439645 . + . misc_feature unknown_1946 ; colour "6" ; note "ttaacgagttttttctatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2441135 2442660 . + . mRNA SPBC21D10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21D10.05c" ; systematic_id "SPBC21D10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB rRNA 2442700 2442852 . - . rRNA SPRRNA.40 ; systematic_id "SPRRNA.40" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "5S rRNA" ;
chromosome2 GeneDB 5'-UTR 2444304 2444328 . + . mRNA SPBC12C2.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.13c" ; systematic_id "SPBC12C2.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2444329 2445924 . + . mRNA SPBC12C2.13c ; systematic_id "SPBC12C2.13c" ; colour "2" ; gene "fnx1 ||| SPBC21D10.04c ||| SPBC12C2.13c" ; Alias "fnx1" ; db_xref "SPD:33/33C04" ; synonym "SPBC21D10.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR293W and YMR088C; db_xref=PMID:18503766; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0031166; integral to vacuolar membrane
GO:0000329; vacuolar membrane
GO:0015182; L-asparagine transmembrane transporter activity
GO:0015188; L-isoleucine transmembrane transporter activity
GO:0015189; L-lysine transmembrane transporter activity
GO:0032975; amino acid import into vacuole
GO:0033554; cellular response to stress
GO:0070314; G1 to G0 transition" ; primary_name "fnx1" ; product "vacuolar membrane amino acid uptake transporter Fnx1" ;
chromosome2 GeneDB CDS 2444329 2445924 . + . mRNA SPBC12C2.13c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2445925 2446232 . + . mRNA SPBC12C2.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.13c" ; systematic_id "SPBC12C2.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2446543 2446697 . + . mRNA SPBC12C2.12c ; ID "SPBC12C2.12c" ; systematic_id "SPBC12C2.12c" ; note "mRNA from AU006571" ;
chromosome2 GeneDB CDS_parts 2446698 2447606 . + . mRNA SPBC12C2.12c ; systematic_id "SPBC12C2.12c" ; colour "2" ; gene "glo1 ||| SPBC21D10.03c ||| SPBC12C2.12c" ; Alias "glo1" ; db_xref "SPD:12/12E09" ; synonym "SPBC21D10.03c" ; GO "GO:0004462; lactoylglutathione lyase activity
GO:0004462; lactoylglutathione lyase activity
GO:0008270; zinc ion binding
GO:0006749; glutathione metabolism
GO:0019243; methylglyoxal catabolism to D-lactate
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006970; response to osmotic stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, k(cat)/ K(m)m 4.3x10(7) M(-1) min(-1); db_xref=PMID:15042280; cv=cat_act; date=20060106 ||| term=orthologous to S. cerevisiae YML004C; date=19700101 ||| term=subunit composition, monomeric; cv=subunit_composition; db_xref=PMID:15042280; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "glo1" ; product "glyoxalase I" ; EC_number "4.4.1.5" ;
chromosome2 GeneDB CDS 2446698 2447606 . + . mRNA SPBC12C2.12c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2447607 2447655 . + . mRNA SPBC12C2.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.12c" ; systematic_id "SPBC12C2.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snoRNA 2447904 2448048 . - . snoRNA SPSNORNA.38 ; Alias "snR33" ; db_xref "EMBL:AJ632003 ||| PMID:15716270" ; systematic_id "SPSNORNA.38" ; controlled_curation "term=orthologous to S. cerevisiae snR33; date=20070104" ; gene "SPSNORNA.38" ; primary_name "snR33" ; product "small nucleolar RNA snR33" ;
chromosome2 GeneDB CDS_parts 2448491 2450854 . - . mRNA SPBC12C2.11 ; systematic_id "SPBC12C2.11" ; colour "7" ; gene "SPBC21D10.02 ||| SPBC12C2.11" ; Alias "SPBC21D10.02" ; db_xref "SPD:38/38C11" ; synonym "SPBC21D10.02" ; GO "GO:0004360; glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GO:0045229; external encapsulating structure organization and biogenesis
GO:0006031; chitin biosynthestic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL104C and YMR084W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC21D10.02" ; product "glutamine-fructose-6-phosphate transaminase (predicted)" ; EC_number "2.6.1.16" ;
chromosome2 GeneDB CDS 2448491 2450505 . - . mRNA SPBC12C2.11 ; colour "7" ;
chromosome2 GeneDB CDS 2450711 2450781 . - . mRNA SPBC12C2.11 ; colour "7" ;
chromosome2 GeneDB CDS 2450850 2450854 . - . mRNA SPBC12C2.11 ; colour "7" ;
chromosome2 GeneDB misc_feature 2450506 2450520 . - . misc_feature unknown_1947 ; colour "6" ; note "ctaattcaggtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2450705 2450710 . - . misc_feature unknown_1948 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2450782 2450796 . - . misc_feature unknown_1949 ; colour "6" ; note "ctaatacgaagctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2450844 2450849 . - . misc_feature unknown_1950 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2450853 2450906 . - . mRNA SPBC12C2.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.11" ; systematic_id "SPBC12C2.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2452052 2456757 . + . mRNA SPBC12C2.10c ; systematic_id "SPBC12C2.10c" ; colour "2" ; gene "pst1 ||| SPBC21D10.01c ||| SPBC12C2.10c" ; Alias "pst1" ; db_xref "SPD:48/48G08" ; synonym "SPBC21D10.01c" ; GO "GO:0032221; Clr6 histone deacetylase complex
GO:0005721; centric heterochromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0003714; transcription corepressor activity
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0030261; chromosome condensation
GO:0016575; histone deacetylation
GO:0033698; Clr6 histone deacetylase complex I/I'" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SIN3 family co-repressor; db_xref=PMID:10022921; date=19700101 ||| term=orthologous to S. cerevisiae YOL004W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10022921; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pst1" ; product "Clr6 histone deacetylase complex subunit Pst1" ;
chromosome2 GeneDB CDS 2452052 2452181 . + . mRNA SPBC12C2.10c ; colour "2" ;
chromosome2 GeneDB CDS 2452319 2456757 . + . mRNA SPBC12C2.10c ; colour "2" ;
chromosome2 GeneDB misc_feature 2452182 2452187 . + . misc_feature unknown_1951 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2452303 2452318 . + . misc_feature unknown_1952 ; colour "6" ; note "ctaattatttgattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2456758 2457063 . + . mRNA SPBC12C2.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.10c" ; systematic_id "SPBC12C2.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2457344 2457714 . + . mRNA SPBC12C2.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.09c" ; systematic_id "SPBC12C2.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2457715 2458689 . + . mRNA SPBC12C2.09c ; db_xref "SPD:14/14A02" ; systematic_id "SPBC12C2.09c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005783; endoplasmic reticulum
GO:0016020; membrane
GO:0046872; metal ion binding
GO:0006882; cellular zinc ion homeostasis
GO:0006629; lipid metabolism
GO:0071294; cellular response to zinc ion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL002C and YDR492W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC12C2.09c" ; product "Haemolysin-III family protein (predicted)" ;
chromosome2 GeneDB CDS 2457715 2458689 . + . mRNA SPBC12C2.09c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2458690 2458879 . + . mRNA SPBC12C2.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.09c" ; systematic_id "SPBC12C2.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2458930 2459018 . - . mRNA SPBC12C2.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.08" ; systematic_id "SPBC12C2.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2459019 2461495 . - . mRNA SPBC12C2.08 ; systematic_id "SPBC12C2.08" ; colour "2" ; gene "SPBC12C2.08 ||| dnm1" ; Alias "dnm1" ; db_xref "SPD:28/28H09" ; GO "GO:0005741; mitochondrial outer membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0003774; motor activity
GO:0006944; membrane fusion
GO:0000266; mitochondrial fission
GO:0000266; mitochondrial fission
GO:0033955; mitochondrion DNA inheritance
GO:0000001; mitochondrion inheritance
GO:0034643; mitochondrion localization, microtubule-mediated
GO:0007005; mitochondrion organization
GO:0007031; peroxisome organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, mitochondria fused; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=phenotype, mitochondrial nucleoid reduced number; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=phenotype, mitochondrial nucleoid enlarged; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=phenotype, respiration defective; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=phenotype, resistance to microtubule depolymerizing drugs; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=phenotype, growth defects, growth inhibition in galactose-based medium; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=orthologous to S. cerevisiae YLL001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dnm1" ; product "dynamin Dnm1" ;
chromosome2 GeneDB CDS 2459019 2461225 . - . mRNA SPBC12C2.08 ; colour "2" ;
chromosome2 GeneDB CDS 2461357 2461495 . - . mRNA SPBC12C2.08 ; colour "2" ;
chromosome2 GeneDB misc_feature 2461226 2461245 . - . misc_feature unknown_1953 ; colour "6" ; note "ttaactcattcgtattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2461351 2461356 . - . misc_feature unknown_1954 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2461494 2461799 . - . mRNA SPBC12C2.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.08" ; systematic_id "SPBC12C2.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2463134 2463199 . + . mRNA SPBC12C2.07c ; ID "SPBC12C2.07c" ; systematic_id "SPBC12C2.07c" ; note "mRNA from AU009668" ;
chromosome2 GeneDB CDS_parts 2463200 2464096 . + . mRNA SPBC12C2.07c ; db_xref "SPD:12/12C04" ; systematic_id "SPBC12C2.07c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR069C and YLR146C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008295; spermidine biosynthesis
GO:0015940; pantothenate biosynthesis
GO:0004766; spermidine synthase activity" ; gene "SPBC12C2.07c" ; product "spermidine synthase (predicted)" ; EC_number "2.5.1.16" ;
chromosome2 GeneDB CDS 2463200 2464096 . + . mRNA SPBC12C2.07c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2464097 2464265 . + . mRNA SPBC12C2.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.07c" ; systematic_id "SPBC12C2.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2464321 2464346 . - . mRNA SPBC12C2.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.06" ; systematic_id "SPBC12C2.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2464347 2465858 . - . mRNA SPBC12C2.06 ; db_xref "SPD:24/24E05" ; systematic_id "SPBC12C2.06" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006406; mRNA export from nucleus
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding
GO:0006415; translational termination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YOR046C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC12C2.06" ; product "cytoplasmic ATP-dependent RNA helicase Dbp5 (predicted)" ;
chromosome2 GeneDB CDS 2464347 2465858 . - . mRNA SPBC12C2.06 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2465857 2465980 . - . mRNA SPBC12C2.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.06" ; systematic_id "SPBC12C2.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2466031 2466172 . + . mRNA SPBC12C2.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.05c" ; systematic_id "SPBC12C2.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2466173 2468485 . + . mRNA SPBC12C2.05c ; systematic_id "SPBC12C2.05c" ; colour "7" ; gene "SPBC12C2.05c ||| bzz1" ; Alias "bzz1" ; db_xref "SPD:46/46G10" ; GO "GO:0030479; actin cortical patch
GO:0005737; cytoplasm
GO:0019992; diacylglycerol binding
GO:0007015; actin filament organization
GO:0006897; endocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C1 domain; date=19700101 ||| term=orthologous to S. cerevisiae YHR114W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bzz1" ; product "diacylglycerol binding protein Bzz1 (predicted)" ;
chromosome2 GeneDB CDS 2466173 2466211 . + . mRNA SPBC12C2.05c ; colour "7" ;
chromosome2 GeneDB CDS 2466256 2466282 . + . mRNA SPBC12C2.05c ; colour "7" ;
chromosome2 GeneDB CDS 2466337 2466400 . + . mRNA SPBC12C2.05c ; colour "7" ;
chromosome2 GeneDB CDS 2466452 2466572 . + . mRNA SPBC12C2.05c ; colour "7" ;
chromosome2 GeneDB CDS 2466651 2467687 . + . mRNA SPBC12C2.05c ; colour "7" ;
chromosome2 GeneDB CDS 2467734 2468090 . + . mRNA SPBC12C2.05c ; colour "7" ;
chromosome2 GeneDB CDS 2468134 2468398 . + . mRNA SPBC12C2.05c ; colour "7" ;
chromosome2 GeneDB CDS 2468467 2468485 . + . mRNA SPBC12C2.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 2466212 2466217 . + . misc_feature unknown_1955 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2466242 2466255 . + . misc_feature unknown_1956 ; colour "6" ; note "ctaatatataaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2466283 2466288 . + . misc_feature unknown_1957 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2466318 2466336 . + . misc_feature unknown_1958 ; colour "6" ; note "ttaacacattgtaacaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2466401 2466406 . + . misc_feature unknown_1959 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2466436 2466451 . + . misc_feature unknown_1960 ; colour "6" ; note "ctaactttgttgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2466573 2466578 . + . misc_feature unknown_1961 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2466639 2466650 . + . misc_feature unknown_1962 ; colour "6" ; note "ctaattttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2467688 2467693 . + . misc_feature unknown_1963 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2467716 2467733 . + . misc_feature unknown_1964 ; colour "6" ; note "ctaacaaaacacgtgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2468091 2468096 . + . misc_feature unknown_1965 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2468117 2468133 . + . misc_feature unknown_1966 ; colour "6" ; note "ctaatagatcaatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2468399 2468404 . + . misc_feature unknown_1967 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2468451 2468466 . + . misc_feature unknown_1968 ; colour "6" ; note "ctaacatatgtcttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2468486 2468620 . + . mRNA SPBC12C2.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.05c" ; systematic_id "SPBC12C2.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2468656 2468656 . - . misc_feature unknown_1969 ; note "Extra A nucleotide - discrepancy between c12C2 seque nce and overlap with c17F3" ;
chromosome2 GeneDB 3'-UTR 2468889 2469060 . - . mRNA SPBC12C2.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.04" ; systematic_id "SPBC12C2.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2469061 2470215 . - . mRNA SPBC12C2.04 ; db_xref "SPD:18/18C03" ; systematic_id "SPBC12C2.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC12C2.04" ; product "NAD binding dehydrogenase family protein" ;
chromosome2 GeneDB CDS 2469061 2470215 . - . mRNA SPBC12C2.04 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 2470214 2470425 . - . mRNA SPBC12C2.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.04" ; systematic_id "SPBC12C2.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2471721 2472056 . - . mRNA SPBC12C2.14c ; db_xref "SPD:51/51G10" ; systematic_id "SPBC12C2.14c" ; colour "6" ; gene "SPBC12C2.14c" ; product "dubious" ;
chromosome2 GeneDB CDS 2471721 2472056 . - . mRNA SPBC12C2.14c ; colour "6" ;
chromosome2 GeneDB misc_RNA 2472439 2472537 . + . misc_RNA SPNCRNA.397 ; db_xref "PMID:18488015" ; synonym "SPNG1651" ; systematic_id "SPNCRNA.397" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 2473075 2473629 . + . mRNA SPBC12C2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.03c" ; systematic_id "SPBC12C2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2473630 2475345 . + . mRNA SPBC12C2.03c ; db_xref "SPD:35/35E11" ; systematic_id "SPBC12C2.03c" ; colour "7" ; GO "GO:0050660; FAD binding
GO:0030586; [mehtionine synthase] reductase activity
GO:0009086; methionine biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC1783.01; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human MTRR ortholog; date=20100625 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100805" ; gene "SPBC12C2.03c" ; product "methionine synthase reductase (predicted)" ;
chromosome2 GeneDB CDS 2473630 2475345 . + . mRNA SPBC12C2.03c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2475346 2475597 . + . mRNA SPBC12C2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.03c" ; systematic_id "SPBC12C2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2475933 2476138 . + . mRNA SPBC12C2.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.02c" ; systematic_id "SPBC12C2.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2476139 2480068 . + . mRNA SPBC12C2.02c ; systematic_id "SPBC12C2.02c" ; colour "2" ; gene "ste20 ||| ste16 ||| SPBC12C2.02c" ; note "appears to contain a PF00618 domain below threshold (which is present in S. cerevisiae), but it isn't certain whether this is a GEF as it doesn't appear to have the usually co-occuring PF00617; date=20061012" ; Alias "ste20" ; db_xref "SPD:34/34A11" ; synonym "ste16" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is Rho1; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YER093C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=phenotype, sterile; date=20101013 ||| term=name description, STErile; date=20101013" ; GO "GO:0031932; TORC 2 complex
GO:0007264; small GTPase mediated signal transduction
GO:0031929; TOR signaling pathway
GO:0006995; cellular response to nitrogen starvation
GO:0031137; positive regulation of conjugation with cellular fusion" ; primary_name "ste20" ; product "Rictor homolog, Ste20" ;
chromosome2 GeneDB CDS 2476139 2480068 . + . mRNA SPBC12C2.02c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2480069 2480462 . + . mRNA SPBC12C2.02c ; ID "SPBC12C2.02c" ; systematic_id "SPBC12C2.02c" ; note "mRNA from AU008479" ;
chromosome2 GeneDB misc_feature 2480489 2481504 . - . misc_feature unknown_1970 ; note "nominal overlap with cosmid SPBC12C2 and cosmid SPBC17F3" ;
chromosome2 GeneDB 5'-UTR 2480551 2480930 . + . mRNA SPBC12C2.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.01c" ; systematic_id "SPBC12C2.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2480931 2481887 . + . mRNA SPBC12C2.01c ; systematic_id "SPBC12C2.01c" ; colour "8" ; gene "SPBC17F3.03c ||| SPBC12C2.01c" ; Alias "SPBC17F3.03c" ; db_xref "SPD:13/13E09" ; synonym "SPBC17F3.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "SPBC17F3.03c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2480931 2481887 . + . mRNA SPBC12C2.01c ; colour "8" ;
chromosome2 GeneDB misc_feature 2480931 2481504 . + . misc_feature unknown_1971 ; note "SPBC12C2.01c, see SPBC17F3.03c for full length CDS" ;
chromosome2 GeneDB 3'-UTR 2481888 2481930 . + . mRNA SPBC12C2.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC12C2.01c" ; systematic_id "SPBC12C2.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2482246 2484320 . - . mRNA SPBC17F3.02 ; systematic_id "SPBC17F3.02" ; colour "2" ; gene "nak1 ||| orb3 ||| mor4 ||| SPBC17F3.02" ; Alias "nak1" ; db_xref "SPD:39/39F06" ; synonym "orb3 ||| mor4" ; GO "GO:0030479; actin cortical patch
GO:0051285; cell cortex of cell tip
GO:0005737; cytoplasm
GO:0031097; medial ring
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0051666; actin cortical patch localization
GO:0030037; actin filament reorganization during cell cycle
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0033554; cellular response to stress
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0006468; protein amino acid phosphorylation
GO:0010590; regulation of cell separation during cytokinesis
GO: SF 3077846; regulation of establishment and/or maintenance of cell polarity resulting in cell shape
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12427731; date=19700101 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:8187760; date=20100731 ||| term=GCK subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YHR102W; date=19700101 ||| term=localization dependent on F- actin; db_xref=PMID:15731009; date=20070704 ||| term=localization dependent on Nak1 kinase activity; db_xref=PMID:15731009; date=20070704 ||| term=localization cell cycle dependent; db_xref=PMID:15731009; date=20070704 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15731009; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "nak1" ; product "PAK-related kinase Nak1" ;
chromosome2 GeneDB CDS 2482246 2483637 . - . mRNA SPBC17F3.02 ; colour "2" ;
chromosome2 GeneDB CDS 2483703 2484189 . - . mRNA SPBC17F3.02 ; colour "2" ;
chromosome2 GeneDB CDS 2484241 2484320 . - . mRNA SPBC17F3.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 2483638 2483651 . - . misc_feature unknown_1972 ; colour "6" ; note "ttaacaaagtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2483697 2483702 . - . misc_feature unknown_1973 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2484190 2484203 . - . misc_feature unknown_1974 ; colour "6" ; note "ctaacattctaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2484235 2484240 . - . misc_feature unknown_1975 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2484319 2484401 . - . mRNA SPBC17F3.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17F3.02" ; systematic_id "SPBC17F3.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2485488 2486126 . - . misc_RNA SPNCRNA.08 ; systematic_id "SPNCRNA.08" ; gene "prl08 ||| prl8 ||| SPNCRNA.08" ; db_xref "PMID:12597277 ||| EMBL:AB084820" ; Alias "prl8" ; synonym "prl08" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl8" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB misc_feature 2485488 2486230 . - . misc_feature prl08 ; gene "prl08 ||| prl09" ; note "prl08 and prl09 both map to within this highly transcribed region (PMID 12597277)" ;
chromosome2 GeneDB misc_RNA 2485500 2486230 . - . misc_RNA SPNCRNA.09 ; systematic_id "SPNCRNA.09" ; gene "prl09 ||| prl9 ||| SPNCRNA.09" ; db_xref "PMID:12597277 ||| EMBL:AB084821" ; Alias "prl9" ; synonym "prl09" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl9" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB 5'-UTR 2486542 2486806 . + . mRNA SPBC17F3.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17F3.01c" ; systematic_id "SPBC17F3.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2486807 2487892 . + . mRNA SPBC17F3.01c ; systematic_id "SPBC17F3.01c" ; colour "2" ; gene "rga5 ||| SPBC17F3.01c ||| SPBC557.01" ; Alias "rga5" ; db_xref "SPD:16/16H09" ; synonym "SPBC557.01" ; GO "GO:0051286; cell tip
GO:0031097; medial ring
GO:0005100; Rho GTPase activator activity
GO:0090334; negative regulation of 1,3-beta-glucan biosynthesis
GO:0008360; regulation of cell shape
GO:0032321; positive regulation of Rho GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12519200; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:11737264; date=20100917 ||| term=phenotype, cell morphology, elongated and multiseptate; db_xref=PMID:12519200; qualifier=deletion|at_high_temperature; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YOR134W and YDR389W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rga5" ; product "Rho-type GTPase activating protein Rga5" ;
chromosome2 GeneDB CDS 2486807 2487892 . + . mRNA SPBC17F3.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 2487692 2487788 . - . misc_feature unknown_1976 ; note "nominal overlap with cosmid SPBC17F3, EM:AL031263 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2487692 2487788 . + . misc_feature unknown_1977 ; note "nominal overlap with cosmid SPBC557, EM:AL132869 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 2487893 2488144 . + . mRNA SPBC17F3.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17F3.01c" ; systematic_id "SPBC17F3.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2488245 2488324 . - . mRNA SPBC557.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC557.02c" ; systematic_id "SPBC557.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2488325 2488936 . - . mRNA SPBC557.02c ; db_xref "SPD:06/06H02" ; systematic_id "SPBC557.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080116 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC557.02c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 2488325 2488936 . - . mRNA SPBC557.02c ; colour "10" ;
chromosome2 GeneDB CDS_parts 2489034 2490828 . - . mRNA SPBC557.03c ; systematic_id "SPBC557.03c" ; colour "2" ; gene "pim1 ||| dcd1 ||| ptr2 ||| SPBC557.03c" ; Alias "pim1" ; db_xref "SPD:40/40G01" ; synonym "dcd1 ||| ptr2" ; GO "GO:0000790; nuclear chromatin
GO:0005087; Ran guanyl-nucleotide exchange factor activity
GO:0031291; Ran protein signal transduction
GO:0006406; mRNA export from nucleus
GO:0007093; mitotic cell cycle checkpoint
GO:0006407; rRNA export from nucleus
GO:0060623; regulation of chromosome condensation
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0007346; regulation of progression through mitotic cell cycle
GO:0007264; small GTPase mediated signal transduction
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL097W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Spi1; db_xref=PMID:8887664; date=20100825" ; primary_name "pim1" ; product "Ran GDP/GTP exchange factor" ;
chromosome2 GeneDB CDS 2489034 2490047 . - . mRNA SPBC557.03c ; colour "2" ;
chromosome2 GeneDB CDS 2490223 2490828 . - . mRNA SPBC557.03c ; colour "2" ;
chromosome2 GeneDB misc_feature 2490048 2490059 . - . misc_feature unknown_1978 ; colour "6" ; note "ctaacatactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2490217 2490222 . - . misc_feature unknown_1979 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2490827 2490998 . - . mRNA SPBC557.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC557.03c" ; systematic_id "SPBC557.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2491214 2491518 . + . misc_RNA SPNCRNA.398 ; db_xref "PMID:18488015" ; synonym "SPNG1655" ; systematic_id "SPNCRNA.398" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 2491884 2492047 . + . mRNA SPBC557.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC557.04" ; systematic_id "SPBC557.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2492048 2494777 . + . mRNA SPBC557.04 ; systematic_id "SPBC557.04" ; colour "2" ; gene "ppk29 ||| SPBC557.04" ; Alias "ppk29" ; db_xref "SPD:39/39A10" ; GO "GO:0030479; actin cortical patch
GO:0004674; protein serine/threonine kinase activity
GO:0000147; actin cortical patch assembly
GO:0006468; protein amino acid phosphorylation
GO:0007015; actin filament organization
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNL020C and YIL095W and YBR059C; date=19700101 ||| term=modification, phosphorylated; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk29" ; product "Ark1/Prk1 family protein kinase Ppk29" ;
chromosome2 GeneDB CDS 2492048 2492147 . + . mRNA SPBC557.04 ; colour "2" ;
chromosome2 GeneDB CDS 2492220 2492353 . + . mRNA SPBC557.04 ; colour "2" ;
chromosome2 GeneDB CDS 2492393 2494777 . + . mRNA SPBC557.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 2492148 2492153 . + . misc_feature unknown_1980 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2492203 2492219 . + . misc_feature unknown_1981 ; colour "6" ; note "ctaacatttttcattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2492354 2492359 . + . misc_feature unknown_1982 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2492381 2492392 . + . misc_feature unknown_1983 ; colour "6" ; note "ctaacttattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2494778 2495011 . + . mRNA SPBC557.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC557.04" ; systematic_id "SPBC557.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2495224 2496610 . + . mRNA SPBC557.05 ; db_xref "SPD:44/44D08" ; systematic_id "SPBC557.05" ; colour "10" ; GO "GO:0005509; calcium ion binding
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC557.05" ; product "arrestin" ;
chromosome2 GeneDB CDS 2495224 2495738 . + . mRNA SPBC557.05 ; colour "10" ;
chromosome2 GeneDB CDS 2495781 2496353 . + . mRNA SPBC557.05 ; colour "10" ;
chromosome2 GeneDB CDS 2496397 2496610 . + . mRNA SPBC557.05 ; colour "10" ;
chromosome2 GeneDB misc_feature 2495739 2495744 . + . misc_feature unknown_1984 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2495769 2495780 . + . misc_feature unknown_1985 ; colour "6" ; note "ctaacagttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2496354 2496359 . + . misc_feature unknown_1986 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2496384 2496396 . + . misc_feature unknown_1987 ; colour "6" ; note "ctaatacttcaag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2496844 2497506 . - . mRNA SPBC365.20c ; systematic_id "SPBC365.20c" ; colour "7" ; gene "SPBC557.06c ||| SPBC365.20c ||| pnc1" ; Alias "pnc1" ; db_xref "SPD:50/50B10" ; synonym "SPBC557.06c" ; GO "GO:0008936; nicotinamidase activity
GO:0019358; nicotinate nucleotide salvage
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL037C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; primary_name "pnc1" ; product "nicotinamidase Pnc1 (predicted)" ; reserved_name "pnc1" ;
chromosome2 GeneDB CDS 2496844 2497506 . - . mRNA SPBC365.20c ; colour "7" ;
chromosome2 GeneDB misc_feature 2497340 2497440 . + . misc_feature unknown_1988 ; note "nominal overlap with cosmid SPBC365 and cosmid SPBC557" ;
chromosome2 GeneDB 5'-UTR 2497505 2497768 . - . mRNA SPBC365.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.20c" ; systematic_id "SPBC365.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2499575 2499834 . + . mRNA SPBC365.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.01" ; systematic_id "SPBC365.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2499835 2500902 . + . mRNA SPBC365.01 ; db_xref "SPD:16/16D07" ; systematic_id "SPBC365.01" ; colour "7" ; GO "GO:0031505; cell wall organization and biogenesis
GO:0015914; phospholipid transport
GO:0005737; cytoplasm
GO:0008525; phosphatidylcholine transporter activity
GO:0008526; phosphatidylinositol transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR380W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC365.01" ; product "sec14 cytosolic factor family (predicted)" ;
chromosome2 GeneDB CDS 2499835 2500902 . + . mRNA SPBC365.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2500903 2501290 . + . mRNA SPBC365.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.01" ; systematic_id "SPBC365.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2501335 2501401 . - . mRNA SPBC365.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.02c" ; systematic_id "SPBC365.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2501402 2502565 . - . mRNA SPBC365.02c ; systematic_id "SPBC365.02c" ; colour "7" ; gene "cox10 ||| SPBC365.02c" ; Alias "cox10" ; db_xref "SPD:43/43H07" ; GO "GO:0008495; protoheme IX farnesyltransferase activity
GO:0005743; mitochondrial inner membrane
GO:0008535; cytochrome c oxidase complex assembly
GO:0006784; heme a biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Leigh syndrome; date=20060821 ||| term=orthologous to S. cerevisiae YPL172C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091218" ; primary_name "cox10" ; product "protoheme IX farnesyltransferase (predicted)" ;
chromosome2 GeneDB CDS 2501402 2502565 . - . mRNA SPBC365.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2502564 2502658 . - . mRNA SPBC365.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.02c" ; systematic_id "SPBC365.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2503268 2503750 . - . mRNA SPBC365.03c ; systematic_id "SPBC365.03c" ; colour "7" ; gene "rpl2101 ||| rpl21 ||| rpl21-1 ||| SPBC365.03c" ; Alias "rpl2101" ; db_xref "SPD:39/39H03" ; synonym "rpl21 ||| rpl21-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR191W and YPL079W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl2101" ; product "60S ribosomal protein L21 (predicted)" ;
chromosome2 GeneDB CDS 2503268 2503750 . - . mRNA SPBC365.03c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2504148 2504296 . - . mRNA SPBC365.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.04c" ; systematic_id "SPBC365.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2504297 2504998 . - . mRNA SPBC365.04c ; db_xref "SPD:08/08C05" ; systematic_id "SPBC365.04c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis
GO:0005730; nucleolus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YDL213C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC365.04c" ; product "RNA-binding protein, involved in ribosome biogenesis (predicted)" ;
chromosome2 GeneDB CDS 2504297 2504998 . - . mRNA SPBC365.04c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2505299 2505306 . - . mRNA SPBC365.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.05c" ; systematic_id "SPBC365.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2505307 2506446 . - . mRNA SPBC365.05c ; systematic_id "SPBC365.05c" ; colour "2" ; gene "slu7 ||| SPBC365.05c" ; Alias "slu7" ; db_xref "SPD:18/18A01" ; GO "GO:0005681; spliceosome complex
GO:0000386; second spliceosomal transesterification activity
GO:0000350; formation of catalytic spliceosome for second transesterification step" ; controlled_curation "term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YDR088C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "slu7" ; product "splicing factor Slu7" ;
chromosome2 GeneDB CDS 2505307 2506446 . - . mRNA SPBC365.05c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2506445 2506678 . - . mRNA SPBC365.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.05c" ; systematic_id "SPBC365.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2506835 2506893 . + . mRNA SPBC365.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.06" ; systematic_id "SPBC365.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2506894 2507390 . + . mRNA SPBC365.06 ; systematic_id "SPBC365.06" ; colour "2" ; gene "pmt3 ||| ubl2 ||| smt3 ||| SPBC365.06" ; Alias "pmt3" ; db_xref "SPD:31/31E04" ; synonym "ubl2 ||| smt3" ; GO "GO:0005634; nucleus
; spindle pole body
GO:0005515; protein binding
GO:0031386; protein tag
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0000070; mitotic sister chromatid segregation
GO:0071441; negative regulation of histone H3-K14 acetylation
GO:0051573; negative regulation of histone H3-K9 methylation
GO:0051572; negative regulation of histone H3-K4 methylation
GO:0016925; protein sumoylation
GO:0000723; telomere maintenance" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance|deletion; db_xref=PMID:10567589; date=20100708 ||| term=phenotype, cut; db_xref=PMID:10567589; qualifier=deletion; date=20100708 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR510W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pmt3" ; product "SUMO" ;
chromosome2 GeneDB CDS 2506894 2507022 . + . mRNA SPBC365.06 ; colour "2" ;
chromosome2 GeneDB CDS 2507117 2507266 . + . mRNA SPBC365.06 ; colour "2" ;
chromosome2 GeneDB CDS 2507316 2507390 . + . mRNA SPBC365.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 2507023 2507028 . + . misc_feature unknown_1989 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2507103 2507116 . + . misc_feature unknown_1990 ; colour "6" ; note "ctaacttgatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2507267 2507272 . + . misc_feature unknown_1991 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2507300 2507315 . + . misc_feature unknown_1992 ; colour "6" ; note "ctaactatacatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2507391 2508214 . + . mRNA SPBC365.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.06" ; systematic_id "SPBC365.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2507560 2509203 . - . mRNA SPBC365.07c ; db_xref "SPD:34/34E08" ; systematic_id "SPBC365.07c" ; colour "7" ; GO "GO:0003712; transcription cofactor activity
GO:0006355; regulation of transcription, DNA- dependent
GO:0006356; transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YJR134C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TMF1 ortholog; date=20091118" ; gene "SPBC365.07c" ; product "TATA element modulatory factor homolog (predicted)" ;
chromosome2 GeneDB CDS 2507560 2509203 . - . mRNA SPBC365.07c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2509420 2509658 . - . mRNA SPBC365.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.08c" ; systematic_id "SPBC365.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2509659 2510434 . - . mRNA SPBC365.08c ; db_xref "SPD:09/09F04" ; systematic_id "SPBC365.08c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0030433; ER-associated protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR411C and YBR201W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC365.08c" ; product "Der1-like (degradation in the ER) family (predicted)" ;
chromosome2 GeneDB CDS 2509659 2510000 . - . mRNA SPBC365.08c ; colour "7" ;
chromosome2 GeneDB CDS 2510051 2510145 . - . mRNA SPBC365.08c ; colour "7" ;
chromosome2 GeneDB CDS 2510197 2510434 . - . mRNA SPBC365.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 2510001 2510017 . - . misc_feature unknown_1993 ; colour "6" ; note "ttaacgtttctctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2510045 2510050 . - . misc_feature unknown_1994 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2510146 2510163 . - . misc_feature unknown_1995 ; note "ctaaccgttttgtcaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2510191 2510196 . - . misc_feature unknown_1996 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2510433 2510474 . - . mRNA SPBC365.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.08c" ; systematic_id "SPBC365.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2510785 2511699 . - . mRNA SPBC365.09c ; db_xref "SPD:12/12F11" ; systematic_id "SPBC365.09c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006261; DNA replication" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YOR077W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human KIN ortholog; date=20100909" ; gene "SPBC365.09c" ; product "human KIN ortholog (predicted)" ;
chromosome2 GeneDB CDS 2510785 2511699 . - . mRNA SPBC365.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2511698 2511898 . - . mRNA SPBC365.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.09c" ; systematic_id "SPBC365.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2512613 2512666 . + . mRNA SPBC365.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.10" ; systematic_id "SPBC365.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2512667 2514887 . + . mRNA SPBC365.10 ; systematic_id "SPBC365.10" ; colour "2" ; gene "arp5 ||| SPBC365.10" ; Alias "arp5" ; db_xref "SPD:46/46G02" ; GO "GO:0006338; chromatin remodeling
GO:0031011; Ino80 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arp5" ; product "actin-like protein Arp5" ;
chromosome2 GeneDB CDS 2512667 2512760 . + . mRNA SPBC365.10 ; colour "2" ;
chromosome2 GeneDB CDS 2512816 2514887 . + . mRNA SPBC365.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 2512761 2512766 . + . misc_feature unknown_1997 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2512796 2512815 . + . misc_feature unknown_1998 ; colour "6" ; note "ctaatgaatatactgtatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2514888 2514978 . + . mRNA SPBC365.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.10" ; systematic_id "SPBC365.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2515260 2516060 . + . mRNA SPBC365.11 ; db_xref "SPD:10/10B06" ; systematic_id "SPBC365.11" ; colour "10" ; GO "GO:0016192; vesicle-mediated transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GRIP domain; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC365.11" ; product "GRIP domain protein" ;
chromosome2 GeneDB CDS 2515260 2516060 . + . mRNA SPBC365.11 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 2516061 2516188 . + . mRNA SPBC365.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.11" ; systematic_id "SPBC365.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2516132 2516248 . - . mRNA SPBC365.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.12c" ; systematic_id "SPBC365.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2516249 2518303 . - . mRNA SPBC365.12c ; systematic_id "SPBC365.12c" ; colour "2" ; gene "ish1 ||| SPBC365.12c" ; Alias "ish1" ; obsolete_name "isp1" ; db_xref "SPD:27/27F09" ; GO "GO:0033554; cellular response to stress
GO:0005515; protein binding
; nuclear membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11751918; date=19700101 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:11751918; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YML128C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ish1" ; product "LEA domain protein" ;
chromosome2 GeneDB CDS 2516249 2518303 . - . mRNA SPBC365.12c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2518302 2518722 . - . mRNA SPBC365.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.12c" ; systematic_id "SPBC365.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2518996 2519570 . - . mRNA SPBC365.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.13c" ; systematic_id "SPBC365.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2519571 2520770 . - . mRNA SPBC365.13c ; systematic_id "SPBC365.13c" ; colour "2" ; gene "hba1 ||| caf1 ||| SPBC365.13c" ; Alias "hba1" ; db_xref "SPD:32/32F04" ; synonym "caf1" ; GO "GO:0005654; nucleoplasm
GO:0005634; nucleus
GO:0008536; Ran GTPase binding
GO:0034599; cellular response to oxidative stress
GO:0006611; protein export from nucleus
GO:0071238; cellular response to brefeldin A
GO:0071313; cellular response to caffeine
GO:0000056; ribosomal small subunit export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL063C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=phenotype, localization defects, nuclear accumulation of Pap1 and Sty1; qualifier=deletion; cv=phenotype; db_xref=PMID:12896976; date=20090826 ||| term=phenotype, resistance to caffeine; qualifier=deletion; db_xref=PMID:12896976; date=20100628" ; primary_name "hba1" ; product "Ran GTPase binding protein Hba1" ;
chromosome2 GeneDB CDS 2519571 2520770 . - . mRNA SPBC365.13c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2520769 2520812 . - . mRNA SPBC365.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.13c" ; systematic_id "SPBC365.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2521193 2521622 . - . mRNA SPBC365.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.14c" ; systematic_id "SPBC365.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2521623 2522925 . - . mRNA SPBC365.14c ; systematic_id "SPBC365.14c" ; colour "2" ; gene "SPBC365.14c" ; Alias "uge1" ; obsolete_name "gal10" ; db_xref "SPD:22/22F08" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human GALE ortholog; db_xref=PMID:19942659; date=20100625" ; GO "GO:0003978; UDP-glucose 4-epimerase activity
GO:0033499; galactose catabolic process via UDP- galactose
GO:0042125; protein amino acid galactosylation" ; primary_name "uge1" ; product "UDP-glucose 4-epimerase Uge1" ;
chromosome2 GeneDB CDS 2521623 2522624 . - . mRNA SPBC365.14c ; colour "2" ;
chromosome2 GeneDB CDS 2522793 2522855 . - . mRNA SPBC365.14c ; colour "2" ;
chromosome2 GeneDB CDS 2522923 2522925 . - . mRNA SPBC365.14c ; colour "2" ;
chromosome2 GeneDB misc_feature 2522625 2522644 . - . misc_feature unknown_1999 ; colour "6" ; note "ctaaccacaatctgcaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2522787 2522792 . - . misc_feature unknown_2000 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2522856 2522872 . - . misc_feature unknown_2001 ; colour "6" ; note "ctaattatgattcatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2522917 2522922 . - . misc_feature unknown_2002 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2522924 2522952 . - . mRNA SPBC365.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.14c" ; systematic_id "SPBC365.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2523946 2524060 . + . mRNA SPBC365.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.15" ; systematic_id "SPBC365.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2524061 2526415 . + . mRNA SPBC365.15 ; systematic_id "SPBC365.15" ; colour "2" ; gene "alp4 ||| SPBC365.15" ; Alias "alp4" ; db_xref "SPD:38/38C08" ; GO "GO:0000923; equatorial microtubule organizing center
GO:0000930; gamma-tubulin complex
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0060630; regulation of M/G1 transition of mitotic cell cycle
GO:0033205; cell cycle cytokinesis
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0007163; establishment and/or maintenance of cell polarity
GO:0033566; gamma tubulin complex localization
GO:0034631; microtubule anchoring at spindle pole body
GO:0007020; microtubule nucleation
GO:0007094; mitotic spindle checkpoint
GO:0030473; nuclear migration, microtubule- mediated
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, microtubule organization defects, long microtubules; qualifier=ts; db_xref=PMID:11080156; date=20100907 ||| term=phenotype, cut; qualifier=ts|conditional|in_presence_of_TBC; db_xref=PMID:11080156; date=20100907 ||| term=phenotype, spindle defects, monopolar spindle; qualifier=ts; db_xref=PMID:11080156; date=20100907 ||| term=orthologous to S. cerevisiae YHR172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "alp4" ; product "gamma tubulin complex Spc97/GCP2 subunit Alp4" ;
chromosome2 GeneDB CDS 2524061 2526415 . + . mRNA SPBC365.15 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2526416 2527084 . + . mRNA SPBC365.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.15" ; systematic_id "SPBC365.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2527461 2528721 . + . misc_RNA SPNCRNA.399 ; db_xref "PMID:18488015" ; synonym "SPNG1662" ; systematic_id "SPNCRNA.399" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 2528770 2529528 . + . misc_RNA SPNCRNA.400 ; db_xref "PMID:18488015" ; synonym "SPNG1663" ; systematic_id "SPNCRNA.400" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 2529699 2530876 . + . misc_RNA SPNCRNA.135 ; systematic_id "SPNCRNA.135" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071010 ||| term=; date=20080430" ; product "non-coding RNA (predicted)" ; note "cDNA hit" ;
chromosome2 GeneDB 5'-UTR 2529715 2530987 . + . mRNA SPBC365.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.16" ; systematic_id "SPBC365.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2530988 2531821 . + . mRNA SPBC365.16 ; db_xref "SPD:10/10H01" ; systematic_id "SPBC365.16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20101124 ||| term=species distribution, conserved in Eukaryotes; date=20101124 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20101124" ; colour "10" ; gene "SPBC365.16" ; product "conserved protein" ;
chromosome2 GeneDB CDS 2530988 2531821 . + . mRNA SPBC365.16 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 2531822 2532136 . + . mRNA SPBC365.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC365.16" ; systematic_id "SPBC365.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2533330 2533462 . + . mRNA SPBC29A10.01 ; Alias "ccr1" ; ID "SPBC29A10.01" ; db_xref "EMBL:X64702" ; systematic_id "SPBC29A10.01" ; primary_name "ccr1" ;
chromosome2 GeneDB CDS_parts 2533463 2535499 . + . mRNA SPBC29A10.01 ; systematic_id "SPBC29A10.01" ; colour "2" ; gene "ccr1 ||| SPBC365.17 ||| SPBC29A10.01" ; Alias "ccr1" ; db_xref "SPD:40/40G09" ; synonym "SPBC365.17" ; GO "GO:0006696; ergosterol biosynthesis
GO:0005789; endoplasmic reticulum membrane
GO:0003958; NADPH-hemoprotein reductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ccr1" ; product "NADPH-cytochrome p450 reductase" ; EC_number "1.6.2.4" ;
chromosome2 GeneDB CDS 2533463 2535499 . + . mRNA SPBC29A10.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 2533519 2539006 . + . misc_feature unknown_2003 ; note "nominal overlap with cosmid SPBC365 and cosmid SPBC29A10" ;
chromosome2 GeneDB conflict 2533554 2533554 . + . conflict unknown_2004 ; citation "[1]" ; note "this was sequenced as a T in cosmid c29A10, but was altered to agree with c365 and ccr1, to allow contiguation" ;
chromosome2 GeneDB 3'-UTR 2535500 2535569 . + . mRNA SPBC29A10.01 ; Alias "ccr1" ; ID "SPBC29A10.01" ; db_xref "EMBL:X64702" ; systematic_id "SPBC29A10.01" ; primary_name "ccr1" ;
chromosome2 GeneDB CDS_parts 2536221 2538027 . + . mRNA SPBC29A10.02 ; systematic_id "SPBC29A10.02" ; colour "2" ; gene "SPBC365.18 ||| SPBC29A10.02 ||| spo5 ||| mrb1 ||| mug12" ; Alias "spo5" ; db_xref "SPD:45/45H09" ; synonym "mrb1 ||| mug12 ||| SPBC365.18" ; GO "GO:0033620; Mei2 nuclear dot
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003723; RNA binding
GO:0007135; meiosis II
GO:0007131; meiotic recombination
GO:0006998; nuclear membrane organization and biogenesis
GO:0060903; positive regulation of meiosis I
GO:0060903; positive regulation of meiosis I
GO:0032120; prospore membrane formation
GO:0031322; prospore-specific spindle pole body modification
GO:0030437; sporulation (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16896214; date=20070201 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human RBMS1 and RBMS2 and RBMS3 ortholog; date=20100222" ; primary_name "spo5" ; product "meiotic RNA-binding protein 1" ;
chromosome2 GeneDB CDS 2536221 2536450 . + . mRNA SPBC29A10.02 ; colour "2" ;
chromosome2 GeneDB CDS 2536499 2536842 . + . mRNA SPBC29A10.02 ; colour "2" ;
chromosome2 GeneDB CDS 2536898 2538027 . + . mRNA SPBC29A10.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 2536451 2536456 . + . misc_feature unknown_2005 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2536483 2536498 . + . misc_feature unknown_2006 ; colour "6" ; note "ctaactaggaatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2536843 2536848 . + . misc_feature unknown_2007 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2536868 2536897 . + . misc_feature unknown_2008 ; colour "6" ; note "ctaatacttaccaaacttttcgtcttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2536874 2536897 . + . misc_feature unknown_2009 ; colour "6" ; note "cttaccaaacttttcgtcttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2538194 2538318 . - . mRNA SPBC29A10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.03c" ; systematic_id "SPBC29A10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2538319 2539953 . - . mRNA SPBC29A10.03c ; systematic_id "SPBC29A10.03c" ; colour "2" ; gene "SPBC365.19c ||| SPBC29A10.03c ||| rlf2" ; Alias "pcf1" ; db_xref "SPD:26/26B02" ; synonym "rlf2 ||| SPBC365.19c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CAF1p150 ortholog; db_xref=PMID:18761674; date=20090723 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18761674; date=20090723 ||| term=misc functional group, histone chaperone; db_xref=PMID:18761674; cv=m_f_g; date=20090723 ||| term=name description, Pombe CAF-1 First subunit; db_xref=PMID:18761674; date=20090723 ||| term=phenotype, sporulation defects; qualifier=deletion; db_xref=PMID:18761674; cv=phenotype; date=20090723" ; GO "GO:0033186; CAF-1 complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005634; nucleus
GO:0005515; protein binding
GO:0006335; DNA replication-dependent nucleosome assembly
GO:0030437; ascospore formation
GO:0070829; heterochromatin maintenance
GO:0035067; negative regulation of histone acetylation
GO:0090053; positive regulation of chromatin silencing at centromere
GO:0090055; positive regulation of chromatin silencing at silent mating-type cassette
GO:0051574; positive regulation of histone H3-K9 methylation
GO:0034504; protein localization in nucleus" ; primary_name "pcf1" ; product "CAF assembly factor (CAF-1) complex large subunit Pcf1" ;
chromosome2 GeneDB CDS 2538319 2539953 . - . mRNA SPBC29A10.03c ; colour "2" ;
chromosome2 GeneDB CDS_parts 2540743 2544444 . + . mRNA SPBC29A10.04 ; systematic_id "SPBC29A10.04" ; colour "2" ; gene "psm1 ||| smc1 ||| SPBC29A10.04" ; Alias "psm1" ; db_xref "SPD:48/48E08" ; synonym "smc1" ; GO "GO:0030892; mitotic cohesin complex
GO:0007064; mitotic sister chromatid cohesion
GO:0005634 ; nucleus
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11069892; date=19700101 ||| term=phenotype, cut; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=phenotype, spindle elongation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=protein sequence feature, coiled-coil; date=19700101 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YFL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Cornelia de Lange syndrome; date=20090213" ; primary_name "psm1" ; product "mitotic cohesin complex subunit Psm1" ;
chromosome2 GeneDB CDS 2540743 2544444 . + . mRNA SPBC29A10.04 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2544445 2545008 . + . mRNA SPBC29A10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.04" ; systematic_id "SPBC29A10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2545507 2545548 . + . mRNA SPBC29A10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.05" ; systematic_id "SPBC29A10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2545549 2547264 . + . mRNA SPBC29A10.05 ; systematic_id "SPBC29A10.05" ; colour "2" ; gene "exo1 ||| SPBC29A10.05 ||| mut2" ; Alias "exo1" ; db_xref "SPD:51/51E02" ; synonym "mut2" ; GO "GO:0005634; nucleus
GO:0017108; 5'-flap endonuclease activity
GO:0008409; 5'-3' exonuclease activity
GO:0003690; double-stranded DNA binding
GO:0043570; maintenance of DNA repeat elements
GO:0000706; meiotic DNA double-strand break processing
GO:0006298; mismatch repair
GO:0006298; mismatch repair
GO:0006298; mismatch repair
GO:0006312; mitotic recombination
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer, hereditary nonpolyposis colon; date=20070219 ||| term=disease associated, cancer; date=20070219 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7855597; date=20070219 ||| term=XP-G family; date=19700101 ||| term=orthologous to S. cerevisiae YOR033C and YDR263C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "exo1" ; product "exonuclease I Exo1" ;
chromosome2 GeneDB CDS 2545549 2547264 . + . mRNA SPBC29A10.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2547265 2547816 . + . mRNA SPBC29A10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.05" ; systematic_id "SPBC29A10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2547379 2547515 . - . mRNA SPBC29A10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.06c" ; systematic_id "SPBC29A10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2547516 2548566 . - . mRNA SPBC29A10.06c ; db_xref "SPD:51/51C08" ; systematic_id "SPBC29A10.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC29A10.06c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 2547516 2547812 . - . mRNA SPBC29A10.06c ; colour "10" ;
chromosome2 GeneDB CDS 2547869 2548072 . - . mRNA SPBC29A10.06c ; colour "10" ;
chromosome2 GeneDB CDS 2548180 2548566 . - . mRNA SPBC29A10.06c ; colour "10" ;
chromosome2 GeneDB misc_feature 2547813 2547824 . - . misc_feature unknown_2010 ; colour "6" ; note "ctaataagatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2547863 2547868 . - . misc_feature unknown_2011 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2548073 2548085 . - . misc_feature unknown_2012 ; colour "6" ; note "ttaactctgttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2548174 2548179 . - . misc_feature unknown_2013 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2548565 2548645 . - . mRNA SPBC29A10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.06c" ; systematic_id "SPBC29A10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2548690 2548694 . + . mRNA SPBC29A10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.07" ; systematic_id "SPBC29A10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2548695 2552447 . + . mRNA SPBC29A10.07 ; db_xref "SPD:51/51E12" ; systematic_id "SPBC29A10.07" ; colour "7" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR129W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC29A10.07" ; product "nucleoporin Pom152 (predicted)" ;
chromosome2 GeneDB CDS 2548695 2552447 . + . mRNA SPBC29A10.07 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2552448 2552490 . + . mRNA SPBC29A10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.07" ; systematic_id "SPBC29A10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2554009 2554046 . + . mRNA SPBC29A10.08 ; ID "SPBC29A10.08" ; systematic_id "SPBC29A10.08" ; note "mRNA from SPD134" ;
chromosome2 GeneDB CDS_parts 2554047 2555426 . + . mRNA SPBC29A10.08 ; systematic_id "SPBC29A10.08" ; colour "7" ; gene "SPBC29A10.08 ||| gas2" ; Alias "gas2" ; db_xref "SPD:51/51D07" ; GO "GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005886; plasma membrane
GO:0042124; 1,3-beta-glucanosyltransferase activity
GO:0031505; cell wall organization and biogenesis
GO:0071966; fungal-type cell wall polysaccharide biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR343W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; primary_name "gas2" ; product "1,3-beta-glucanosyltransferase Gas2 (predicted)" ;
chromosome2 GeneDB CDS 2554047 2555426 . + . mRNA SPBC29A10.08 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2555427 2555531 . + . mRNA SPBC29A10.08 ; ID "SPBC29A10.08" ; systematic_id "SPBC29A10.08" ; note "mRNA from SPD134" ;
chromosome2 GeneDB CDS_parts 2555664 2556947 . - . mRNA SPBC29A10.09c ; db_xref "SPD:51/51D05" ; systematic_id "SPBC29A10.09c" ; colour "7" ; GO "GO:0006402; mRNA catabolism
GO:0004540; ribonuclease activity
GO:0003676; nucleic acid binding
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC29A10.09c" ; product "CAF1 family ribonuclease (predicted)" ;
chromosome2 GeneDB CDS 2555664 2556947 . - . mRNA SPBC29A10.09c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2557224 2557292 . - . mRNA SPBC29A10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.10c" ; systematic_id "SPBC29A10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2557293 2563127 . - . mRNA SPBC29A10.10c ; db_xref "SPD:51/51F01" ; systematic_id "SPBC29A10.10c" ; colour "7" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing
GO:0016180; snRNA processing
GO:0043144; snoRNA processing
GO:0008033; tRNA processing
GO:0005634; nucleus
GO:0035649; Nrd1 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR430W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC29A10.10c" ; product "tRNA-splicing endonuclease positive effector (predicted)" ;
chromosome2 GeneDB CDS 2557293 2563127 . - . mRNA SPBC29A10.10c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2563126 2563164 . - . mRNA SPBC29A10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.10c" ; systematic_id "SPBC29A10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2563536 2563925 . - . mRNA SPBC29A10.11c ; ID "SPBC29A10.11c" ; db_xref "EMBL:DQ665300" ; systematic_id "SPBC29A10.11c" ;
chromosome2 GeneDB conflict 2563798 2563807 . + . conflict unknown_2014 ; colour "4" ; citation "[1]" ; note "cosmid c29A10 overlaps cosmid c2G5, but c2G5 has bee n cut to nominal with respect to c29A10. In the overlapping region there was a discrepancy with c2G5 having 9 A's but c29A10 having 10. The author has been unable to resolve th is conflict, we have submitted the higher number." ;
chromosome2 GeneDB CDS_parts 2563926 2565182 . - . mRNA SPBC29A10.11c ; systematic_id "SPBC29A10.11c" ; colour "7" ; gene "vps902 ||| vps9b ||| SPBC29A10.11c" ; note "PMID:16823372 predict a frameshift at base 1339" ; Alias "vps902" ; db_xref "SPD:51/51D03" ; synonym "vps9b" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML097C; date=19700101 ||| term=CUE domain protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005829; cytosol
GO:0006623; protein targeting to vacuole
GO:0005085; guanyl-nucleotide exchange factor activity" ; primary_name "vps902" ; product "guanyl-nucleotide exchange factor Vps902 (predicted)" ;
chromosome2 GeneDB CDS 2563926 2564748 . - . mRNA SPBC29A10.11c ; colour "7" ;
chromosome2 GeneDB CDS 2564797 2565182 . - . mRNA SPBC29A10.11c ; colour "7" ;
chromosome2 GeneDB misc_feature 2564749 2564763 . - . misc_feature unknown_2015 ; note "ctaatattgtgttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2564791 2564796 . - . misc_feature unknown_2016 ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2565183 2565268 . - . mRNA SPBC29A10.11c ; ID "SPBC29A10.11c" ; db_xref "EMBL:DQ665300" ; systematic_id "SPBC29A10.11c" ;
chromosome2 GeneDB 5'-UTR 2566409 2566433 . + . mRNA SPBC29A10.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.12" ; systematic_id "SPBC29A10.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2566434 2567165 . + . mRNA SPBC29A10.12 ; systematic_id "SPBC29A10.12" ; colour "10" ; gene "SPBC29A10.12" ; note "functional inferences from Clan membership" ; db_xref "SPD:51/51B10" ; GO "GO:0005634; nucleus
GO:0006355; regulation of transcription, DNA- dependent
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "HMG-box variant" ;
chromosome2 GeneDB CDS 2566434 2566967 . + . mRNA SPBC29A10.12 ; colour "10" ;
chromosome2 GeneDB CDS 2567076 2567165 . + . mRNA SPBC29A10.12 ; colour "10" ;
chromosome2 GeneDB misc_feature 2566968 2566973 . + . misc_feature unknown_2017 ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2567063 2567075 . + . misc_feature unknown_2018 ; note "ctaacaatttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2567166 2567172 . + . mRNA SPBC29A10.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.12" ; systematic_id "SPBC29A10.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2567701 2568228 . + . mRNA SPBC29A10.13 ; systematic_id "SPBC29A10.13" ; colour "7" ; gene "atp7 ||| SPBC29A10.13" ; Alias "atp7" ; db_xref "SPD:51/51B05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL016C; date=19700101 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20080108 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0016021; integral to membrane
GO:0000274; proton-transporting ATP synthase, stator stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0005198; structural molecule activity
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0043623; cellular protein complex assembly" ; primary_name "atp7" ; product "F0-ATPase subunit D (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB CDS 2567701 2568228 . + . mRNA SPBC29A10.13 ; colour "7" ;
chromosome2 GeneDB misc_RNA 2567830 2568256 . - . misc_RNA SPNCRNA.25 ; systematic_id "SPNCRNA.25" ; gene "prl25 ||| SPNCRNA.25" ; note "antisense" ; db_xref "PMID:12597277 ||| EMBL:AB084837" ; Alias "prl25" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl25" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB 3'-UTR 2568229 2568270 . + . mRNA SPBC29A10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.13" ; systematic_id "SPBC29A10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2568938 2570810 . + . mRNA SPBC29A10.14 ; systematic_id "SPBC29A10.14" ; colour "2" ; gene "rec8 ||| SPBC29A10.14" ; Alias "rec8" ; db_xref "SPD:51/51E03" ; GO "GO:0008278; cohesin complex
GO:0000939; inner kinetochore of condensed chromosome
GO:0030893; meiotic cohesin complex
GO:0000228; nuclear chromosome
GO:0005515; protein binding
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0045143; homologous chromosome segregation
GO:0030999; linear element formation
GO:0042138; meiotic DNA double-strand break formation
GO:0007131; meiotic recombination
GO:0045144; meiotic sister chromatid segregation
GO:0045144; meiotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=misc, region specific activator of recombination; db_xref=PMID:010207075|PMID:10471700; cv=misc; date=19700101 ||| term=orthologous to S. cerevisiae YPR007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rec8" ; product "meiotic cohesin complex subunit Rec8" ;
chromosome2 GeneDB CDS 2568938 2568993 . + . mRNA SPBC29A10.14 ; colour "2" ;
chromosome2 GeneDB CDS 2569037 2569224 . + . mRNA SPBC29A10.14 ; colour "2" ;
chromosome2 GeneDB CDS 2569277 2569373 . + . mRNA SPBC29A10.14 ; colour "2" ;
chromosome2 GeneDB CDS 2569426 2570675 . + . mRNA SPBC29A10.14 ; colour "2" ;
chromosome2 GeneDB CDS 2570716 2570810 . + . mRNA SPBC29A10.14 ; colour "2" ;
chromosome2 GeneDB misc_feature 2568994 2568999 . + . misc_feature unknown_2019 ; note "gtatag, splice donor sequence" ;
chromosome2 GeneDB intron 2568994 2569036 . + . intron SPBC29A10.14 ; systematic_id "SPBC29A10.14" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2569024 2569036 . + . misc_feature unknown_2020 ; note "ctaataattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2569225 2569230 . + . misc_feature unknown_2021 ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 2569225 2569276 . + . intron SPBC29A10.14 ; systematic_id "SPBC29A10.14" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2569263 2569276 . + . misc_feature unknown_2022 ; note "ctaattatgcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2569374 2569379 . + . misc_feature unknown_2023 ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB intron 2569374 2569425 . + . intron SPBC29A10.14 ; systematic_id "SPBC29A10.14" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2569414 2569425 . + . misc_feature unknown_2024 ; note "ctaaccttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2570676 2570681 . + . misc_feature unknown_2025 ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 2570676 2570715 . + . intron SPBC29A10.14 ; systematic_id "SPBC29A10.14" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2570701 2570715 . + . misc_feature unknown_2026 ; note "ctaacaaaacaatag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 2571077 2571161 . + . mRNA SPBC29A10.15 ; ID "SPBC29A10.15" ; systematic_id "SPBC29A10.15" ; note "mRNA from SP40378" ;
chromosome2 GeneDB CDS_parts 2571162 2573337 . + . mRNA SPBC29A10.15 ; systematic_id "SPBC29A10.15" ; colour "2" ; gene "orc1 ||| orp1 ||| SPBC29A10.15 ||| cdc30" ; Alias "orc1" ; db_xref "SPD:51/51E07" ; synonym "orp1 ||| cdc30" ; GO "GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0003688; DNA replication origin binding
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0005656; pre-replicative complex
GO:0000790; nuclear chromatin
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0031261; DNA replication preinitiation complex
GO:0006261; DNA-dependent DNA replication
GO:0005634; nucleus
GO:0007090; regulation of S phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; db_xref=PMID:8618924; date=20100705 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:8895665; allele=cdc30-4; date=20100705 ||| term=gene expression, constitutive; db_xref=PMID:8618924; date=20100705 ||| term=AT hook protein; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YML065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "orc1" ; product "origin recognition complex subunit Orc1" ;
chromosome2 GeneDB CDS 2571162 2572048 . + . mRNA SPBC29A10.15 ; colour "2" ;
chromosome2 GeneDB CDS 2572101 2573337 . + . mRNA SPBC29A10.15 ; colour "2" ;
chromosome2 GeneDB misc_feature 2572049 2572054 . + . misc_feature unknown_2027 ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 2572049 2572100 . + . intron SPBC29A10.15 ; systematic_id "SPBC29A10.15" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2572086 2572100 . + . misc_feature unknown_2028 ; note "ctaacgttgatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2573338 2573477 . + . mRNA SPBC29A10.15 ; ID "SPBC29A10.15" ; systematic_id "SPBC29A10.15" ; note "mRNA from SP40378" ;
chromosome2 GeneDB CDS_parts 2573866 2574487 . + . mRNA SPBC29A10.17 ; db_xref "PMID:18488015" ; systematic_id "SPBC29A10.17" ; controlled_curation "term=species distribution, no apparent orthologs; date=20080102 ||| term=species distribution, sequence orphan; date=20080102 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; colour "8" ; gene "SPBC29A10.17" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2573866 2573903 . + . mRNA SPBC29A10.17 ; colour "8" ;
chromosome2 GeneDB CDS 2573998 2574093 . + . mRNA SPBC29A10.17 ; colour "8" ;
chromosome2 GeneDB CDS 2574137 2574214 . + . mRNA SPBC29A10.17 ; colour "8" ;
chromosome2 GeneDB CDS 2574277 2574487 . + . mRNA SPBC29A10.17 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 2574663 2574821 . - . mRNA SPBC29A10.16c ; ID "SPBC29A10.16c" ; systematic_id "SPBC29A10.16c" ; note "mRNA from AU012172" ;
chromosome2 GeneDB CDS_parts 2574822 2575428 . - . mRNA SPBC29A10.16c ; db_xref "SPD:51/51B06" ; systematic_id "SPBC29A10.16c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0009055; electron carrier activity
GO:0006696; ergosterol biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL111C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC29A10.16c" ; product "cytochrome b5 (predicted)" ;
chromosome2 GeneDB CDS 2574822 2574894 . - . mRNA SPBC29A10.16c ; colour "7" ;
chromosome2 GeneDB CDS 2574943 2575096 . - . mRNA SPBC29A10.16c ; colour "7" ;
chromosome2 GeneDB CDS 2575281 2575428 . - . mRNA SPBC29A10.16c ; colour "7" ;
chromosome2 GeneDB misc_feature 2574895 2574906 . - . misc_feature unknown_2029 ; note "ctaacagaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2574937 2574942 . - . misc_feature unknown_2030 ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2575097 2575113 . - . misc_feature unknown_2031 ; note "ctaactatttgttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2575275 2575280 . - . misc_feature unknown_2032 ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2575427 2575482 . - . mRNA SPBC29A10.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC29A10.16c" ; systematic_id "SPBC29A10.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2575890 2576130 . + . misc_feature unknown_2033 ; note "nominal overlap with cosmid SPBC2G5, EM:AL033385 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2575890 2576130 . - . misc_feature unknown_2034 ; note "nominal overlap with cosmid SPBC29A10, EM:AL034463 S. pombe chromosome 2" ;
chromosome2 GeneDB tRNA 2576376 2576448 . - . tRNA SPBTRNAPHE.03 ; systematic_id "SPBTRNAPHE.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033459; GAA codon-amino acid adaptor activity" ; gene "SPBTRNAPHE.03" ; product "tRNA Phenylalanine" ; note "tRNA Phe anticodon GAA, Cove score 61.65" ;
chromosome2 GeneDB 5'-UTR 2576576 2576620 . + . mRNA SPBC2G5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G5.01" ; systematic_id "SPBC2G5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2576621 2577745 . + . mRNA SPBC2G5.01 ; db_xref "SPD:17/17F11" ; systematic_id "SPBC2G5.01" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CCDC47 ortholog; date=20100727" ; gene "SPBC2G5.01" ; product "DUF1682 family protein" ;
chromosome2 GeneDB CDS 2576621 2577745 . + . mRNA SPBC2G5.01 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 2577746 2577786 . + . mRNA SPBC2G5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G5.01" ; systematic_id "SPBC2G5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2578010 2578316 . - . mRNA SPBC2G5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G5.02c" ; systematic_id "SPBC2G5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2578317 2579081 . - . mRNA SPBC2G5.02c ; db_xref "SPD:09/09D12" ; systematic_id "SPBC2G5.02c" ; colour "7" ; GO "GO:0005956; protein kinase CK2 complex
GO:0019887; protein kinase regulator activity
GO:0006468; protein amino acid phosphorylation
GO:0045449; regulation of transcription
GO:0007165; signal transduction
GO:0045859; regulation of protein kinase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR039W and YGL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; gene "SPBC2G5.02c" ; product "CK2 family regulatory subunit (predicted)" ;
chromosome2 GeneDB CDS 2578317 2579081 . - . mRNA SPBC2G5.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2579080 2580050 . - . mRNA SPBC2G5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G5.02c" ; systematic_id "SPBC2G5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2580438 2581248 . + . misc_RNA SPNCRNA.401 ; db_xref "PMID:18488015" ; synonym "SPNG1677" ; systematic_id "SPNCRNA.401" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 2581957 2582964 . + . mRNA SPBC2G5.03 ; systematic_id "SPBC2G5.03" ; colour "2" ; gene "SPBC2G5.03 ||| ctu1" ; Alias "ctu1" ; db_xref "SPD:14/14H09" ; GO "GO:0002144; cytosolic tRNA thiouridylase complex
GO:0005829; cytosol
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0008360; regulation of cell shape
GO:0006450; regulation of translational fidelity
GO:0002143; tRNA wobble uridine thiolation
GO:0002143; tRNA wobble uridine thiolation
GO:0032447; protein urmylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL211W; date=19700101 ||| term=phenotype, genome stability defects; qualifier=required; db_xref=PMID:18391219; cv=phenotype; date=20080411 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18391219; date=20080411 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ctu1" ; product "cytosolic thiouridylase subunit Ctu1" ;
chromosome2 GeneDB CDS 2581957 2582964 . + . mRNA SPBC2G5.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2582965 2583016 . + . mRNA SPBC2G5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G5.03" ; systematic_id "SPBC2G5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2583072 2583233 . - . mRNA SPBC2G5.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G5.04c" ; systematic_id "SPBC2G5.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2583234 2584235 . - . mRNA SPBC2G5.04c ; db_xref "SPD:14/14G02" ; systematic_id "SPBC2G5.04c" ; colour "7" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030176; integral to endoplasmic reticulum membrane
GO:0030134; ER to Golgi transport vesicle
GO:0030173; integral to Golgi membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML067C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC2G5.04c" ; product "COPII-coated vesicle component Erv41 (predicted)" ;
chromosome2 GeneDB CDS 2583234 2584235 . - . mRNA SPBC2G5.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2584234 2584282 . - . mRNA SPBC2G5.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G5.04c" ; systematic_id "SPBC2G5.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2584403 2585684 . + . misc_RNA SPNCRNA.402 ; db_xref "PMID:18488015" ; synonym "SPNG1678" ; systematic_id "SPNCRNA.402" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 2586431 2586520 . + . mRNA SPBC2G5.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G5.05" ; systematic_id "SPBC2G5.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2586521 2588578 . + . mRNA SPBC2G5.05 ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00710; ||| SPD:27/27F10" ; systematic_id "SPBC2G5.05" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR074C and YBR117C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009052; pentose-phosphate shunt, non-oxidative branch
GO:0004802; transketolase activity
GO:0005737; cytoplasm" ; gene "SPBC2G5.05" ; product "transketolase (predicted)" ; EC_number "2.2.1.1" ;
chromosome2 GeneDB CDS 2586521 2588578 . + . mRNA SPBC2G5.05 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2588579 2588746 . + . mRNA SPBC2G5.05 ; ID "SPBC2G5.05" ; db_xref "EMBL:D89172" ; systematic_id "SPBC2G5.05" ;
chromosome2 GeneDB 3'-UTR 2589004 2589099 . - . mRNA SPBC2G5.06c ; ID "SPBC2G5.06c" ; systematic_id "SPBC2G5.06c" ; note "mRNA from AU013030" ;
chromosome2 GeneDB CDS_parts 2589100 2590479 . - . mRNA SPBC2G5.06c ; systematic_id "SPBC2G5.06c" ; colour "2" ; gene "hmt2 ||| cad1 ||| SPBC2G5.06c" ; Alias "hmt2" ; db_xref "SPD:40/40E02" ; synonym "cad1" ; GO "GO:0016672; oxidoreductase activity, acting on sulfur group of donors, quinone or similar compound as acceptor
GO:0005739; mitochondrion
GO:0071276; cellular response to cadmium ion
GO:0006876; cadmium ion homeostasis
GO:0042762; regulation of sulfur metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hmt2" ; product "sulfide-quinone oxidoreductase" ;
chromosome2 GeneDB CDS 2589100 2590479 . - . mRNA SPBC2G5.06c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2590478 2590880 . - . mRNA SPBC2G5.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G5.06c" ; systematic_id "SPBC2G5.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2591755 2592257 . - . mRNA SPBC2G5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G5.07c" ; systematic_id "SPBC2G5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2592258 2593170 . - . mRNA SPBC2G5.07c ; systematic_id "SPBC2G5.07c" ; colour "2" ; gene "rpc25 ||| SPBC2G5.07c" ; Alias "rpc25" ; db_xref "SPD:32/32B01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL144C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006384; transcription initiation from RNA polymerase III promoter" ; primary_name "rpc25" ; product "DNA-directed RNA polymerase III complex subunit Rpc25" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB CDS 2592258 2592305 . - . mRNA SPBC2G5.07c ; colour "2" ;
chromosome2 GeneDB CDS 2592440 2592708 . - . mRNA SPBC2G5.07c ; colour "2" ;
chromosome2 GeneDB CDS 2592760 2592846 . - . mRNA SPBC2G5.07c ; colour "2" ;
chromosome2 GeneDB CDS 2592963 2593170 . - . mRNA SPBC2G5.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 2592306 2592321 . - . misc_feature unknown_2035 ; colour "6" ; note "ctaactatatatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2592434 2592439 . - . misc_feature unknown_2036 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2592709 2592726 . - . misc_feature unknown_2037 ; colour "6" ; note "ttaatgtttttctcccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2592754 2592759 . - . misc_feature unknown_2038 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2592847 2592859 . - . misc_feature unknown_2039 ; colour "6" ; note "ctaattagattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2592957 2592962 . - . misc_feature unknown_2040 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2593169 2593357 . - . mRNA SPBC2G5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G5.07c" ; systematic_id "SPBC2G5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2594358 2594463 . + . mRNA SPBC25B2.01 ; ID "SPBC25B2.01" ; systematic_id "SPBC25B2.01" ; note "mRNA from AU013219" ;
chromosome2 GeneDB CDS_parts 2594464 2596339 . + . mRNA SPBC25B2.01 ; systematic_id "SPBC25B2.01" ; colour "7" ; gene "SPBC2G5.08 ||| SPBC25B2.01" ; Alias "SPBC2G5.08" ; db_xref "SPD:26/26D02" ; synonym "SPBC2G5.08" ; GO "GO:0006412; translation
GO:0005737; cytoplasm
GO:0005525; GTP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR084C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC2G5.08" ; product "elongation factor 1 alpha related protein (predicted)" ;
chromosome2 GeneDB CDS 2594464 2594503 . + . mRNA SPBC25B2.01 ; colour "7" ;
chromosome2 GeneDB CDS 2594558 2594611 . + . mRNA SPBC25B2.01 ; colour "7" ;
chromosome2 GeneDB CDS 2594655 2596339 . + . mRNA SPBC25B2.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 2594504 2594509 . + . misc_feature unknown_2041 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome2 GeneDB intron 2594504 2594557 . + . intron SPBC25B2.01 ; systematic_id "SPBC25B2.01" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2594543 2594557 . + . misc_feature unknown_2042 ; colour "6" ; note "ttaacgtctttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2594612 2594617 . + . misc_feature unknown_2043 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB intron 2594612 2594654 . + . intron SPBC25B2.01 ; systematic_id "SPBC25B2.01" ;
chromosome2 GeneDB misc_feature 2594637 2594654 . + . misc_feature unknown_2044 ; colour "6" ; note "ttaacgaacaatatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2595598 2599534 . + . misc_feature unknown_2045 ; note "nominal overlap with cosmid SPBC25B2 and cosmid SPBC2G5" ;
chromosome2 GeneDB 3'-UTR 2596340 2596381 . + . mRNA SPBC25B2.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.01" ; systematic_id "SPBC25B2.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2596425 2600435 . - . mRNA SPBC25B2.02c ; systematic_id "SPBC25B2.02c" ; colour "2" ; gene "mam1 ||| SPBC2G5.09c ||| SPBC25B2.02c" ; note "SPCC663.03, pmd1 is more closely related to STE6" ; Alias "mam1" ; db_xref "SPD:34/34B02" ; synonym "SPBC2G5.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:9236781; date=20070216 ||| term=MDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YKL209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0010008; endosome membrane
GO:0000139; Golgi membrane
GO:0005524; ATP binding
GO:0042626; ATPase activity, coupled to transmembrane movement of substances
GO:0000770; peptide pheromone export" ; primary_name "mam1" ; product "M-factor transporter Mam1" ;
chromosome2 GeneDB CDS 2596425 2600435 . - . mRNA SPBC25B2.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2600434 2600446 . - . mRNA SPBC25B2.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.02c" ; systematic_id "SPBC25B2.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2601130 2601336 . - . misc_RNA SPNCRNA.539 ; db_xref "PMID:18488015" ; synonym "SPNGAF77" ; systematic_id "SPNCRNA.539" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB 5'-UTR 2601820 2602283 . + . mRNA SPBC25B2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.03" ; systematic_id "SPBC25B2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2602284 2604227 . + . mRNA SPBC25B2.03 ; db_xref "SPD:26/26H09" ; systematic_id "SPBC25B2.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); qualifier=inferred from context; date=20070129 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR140W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC25B2.03" ; product "zf-C3HC4 type zinc finger" ;
chromosome2 GeneDB CDS 2602284 2602433 . + . mRNA SPBC25B2.03 ; colour "10" ;
chromosome2 GeneDB CDS 2602713 2604227 . + . mRNA SPBC25B2.03 ; colour "10" ;
chromosome2 GeneDB misc_feature 2602434 2602439 . + . misc_feature unknown_2046 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2602699 2602712 . + . misc_feature unknown_2047 ; colour "6" ; note "ctaacatgttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2604228 2604577 . + . mRNA SPBC25B2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.03" ; systematic_id "SPBC25B2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2604654 2605731 . - . mRNA SPBC25B2.04c ; systematic_id "SPBC25B2.04c" ; colour "7" ; gene "SPBC25B2.04c" ; Alias "mtg1" ; db_xref "SPD:16/16F10" ; GO "GO:0005743; mitochondrial inner membrane
GO:0003924; GTPase activity
GO:0032543; mitochondrial translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mtg1" ; product "mitochondrial GTPase involved in translation Mtg1 (predicted)" ;
chromosome2 GeneDB CDS 2604654 2605021 . - . mRNA SPBC25B2.04c ; colour "7" ;
chromosome2 GeneDB CDS 2605113 2605731 . - . mRNA SPBC25B2.04c ; colour "7" ;
chromosome2 GeneDB misc_feature 2605022 2605034 . - . misc_feature unknown_2048 ; colour "6" ; note "ctaactgctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2605107 2605112 . - . misc_feature unknown_2049 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2605730 2605900 . - . mRNA SPBC25B2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.04c" ; systematic_id "SPBC25B2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2605945 2605969 . + . mRNA SPBC25B2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.05" ; systematic_id "SPBC25B2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2605970 2606953 . + . mRNA SPBC25B2.05 ; systematic_id "SPBC25B2.05" ; colour "2" ; gene "mis3 ||| SPBC25B2.05" ; Alias "mis3" ; db_xref "SPD:32/32C01" ; GO "GO:0005730; nucleolus
GO:0003723; RNA binding
GO:0006364; rRNA processing
GO:0051726; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, pear shaped; allele=mis3-244; qualifier=ts; db_xref=PMID:10947840; date=20100824 ||| term=phenotype, cell morphology, stubby cells; allele=mis3-244; qualifier=ts; db_xref=PMID:10947840; date=20100824 ||| term=phenotype, sensitive to HU; allele=mis3-244; qualifier=ts; cv=phenotype; db_xref=PMID:10947840; date=20091221 ||| term=KH domain; date=19700101 ||| term=orthologous to S. cerevisiae YCL059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis3" ; product "rRNA processing protein Mis3" ;
chromosome2 GeneDB CDS 2605970 2606953 . + . mRNA SPBC25B2.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2606954 2606998 . + . mRNA SPBC25B2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.05" ; systematic_id "SPBC25B2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2607219 2607313 . - . mRNA SPBC25B2.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.06c" ; systematic_id "SPBC25B2.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2607314 2608370 . - . mRNA SPBC25B2.06c ; systematic_id "SPBC25B2.06c" ; colour "2" ; gene "SPBC25B2.06c ||| btb2" ; Alias "btb2" ; db_xref "SPD:16/16B12" ; GO "GO:0000151; ubiquitin ligase complex
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BTB/POZ domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "btb2" ; product "BTB/POZ domain protein Btb2" ;
chromosome2 GeneDB CDS 2607314 2608105 . - . mRNA SPBC25B2.06c ; colour "2" ;
chromosome2 GeneDB CDS 2608308 2608370 . - . mRNA SPBC25B2.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 2608106 2608119 . - . misc_feature unknown_2050 ; colour "6" ; note "ctaaccctagctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2608302 2608307 . - . misc_feature unknown_2051 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2608369 2608429 . - . mRNA SPBC25B2.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.06c" ; systematic_id "SPBC25B2.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2608688 2609037 . - . mRNA SPBC25B2.07c ; ID "SPBC25B2.07c" ; systematic_id "SPBC25B2.07c" ; note "mRNA from AU007944" ;
chromosome2 GeneDB CDS_parts 2609038 2610543 . - . mRNA SPBC25B2.07c ; systematic_id "SPBC25B2.07c" ; colour "10" ; gene "SPBC25B2.07c ||| mug164" ; Alias "mug164" ; db_xref "SPD:24/24D10" ; GO "GO:0015630; microtubule cytoskeleton
GO:0000226; microtubule cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:15797925; date=20100917 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug164" ; product "microtubule-associated protein Mug164" ;
chromosome2 GeneDB CDS 2609038 2610543 . - . mRNA SPBC25B2.07c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 2610542 2610626 . - . mRNA SPBC25B2.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.07c" ; systematic_id "SPBC25B2.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2612209 2612586 . + . mRNA SPBC25B2.08 ; db_xref "SPD:02/02G05" ; systematic_id "SPBC25B2.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC25B2.08" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2612209 2612586 . + . mRNA SPBC25B2.08 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 2612987 2613049 . - . mRNA SPBC25B2.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.09c" ; systematic_id "SPBC25B2.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2613050 2614906 . - . mRNA SPBC25B2.09c ; systematic_id "SPBC25B2.09c" ; colour "7" ; gene "SPBC25B2.09c ||| rrs1" ; note "given primary name mrs1 because rrs1 is used for SPBC29A3.16" ; Alias "mrs1" ; db_xref "KEGG:MAP00330; ||| KEGG:MAP00970; ||| SPD:36/36H07" ; synonym "rrs1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR341C and YHR091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0004814; arginine-tRNA ligase activity
GO:0006420; arginyl-tRNA aminoacylation" ; primary_name "mrs1" ; product "mitochondrial and cytoplasmic arginine-tRNA ligase Rrs1/Mrs1 (predicted)" ; EC_number "6.1.1.19" ;
chromosome2 GeneDB CDS 2613050 2614906 . - . mRNA SPBC25B2.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2614905 2615139 . - . mRNA SPBC25B2.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.09c" ; systematic_id "SPBC25B2.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2616237 2616520 . + . mRNA SPBC25B2.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.10" ; systematic_id "SPBC25B2.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2616521 2617444 . + . mRNA SPBC25B2.10 ; db_xref "SPD:12/12H04" ; systematic_id "SPBC25B2.10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBC25B2.10" ; product "Usp (universal stress protein) family protein" ;
chromosome2 GeneDB CDS 2616521 2617444 . + . mRNA SPBC25B2.10 ; colour "10" ;
chromosome2 GeneDB CDS_parts 2617862 2619336 . + . mRNA SPBC25B2.11 ; systematic_id "SPBC25B2.11" ; colour "2" ; gene "pof2 ||| SPBC25B2.11" ; Alias "pof2" ; db_xref "SPD:44/44G08" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YJR090C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pof2" ; product "F-box protein Pof2" ;
chromosome2 GeneDB CDS 2617862 2619052 . + . mRNA SPBC25B2.11 ; colour "2" ;
chromosome2 GeneDB CDS 2619089 2619228 . + . mRNA SPBC25B2.11 ; colour "2" ;
chromosome2 GeneDB CDS 2619276 2619336 . + . mRNA SPBC25B2.11 ; colour "2" ;
chromosome2 GeneDB misc_feature 2619053 2619058 . + . misc_feature unknown_2052 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2619076 2619088 . + . misc_feature unknown_2053 ; colour "6" ; note "ctaaccaaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2619229 2619234 . + . misc_feature unknown_2054 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2619261 2619275 . + . misc_feature unknown_2055 ; colour "6" ; note "ctaactaatatacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2619337 2619476 . + . mRNA SPBC25B2.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25B2.11" ; systematic_id "SPBC25B2.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2619640 2619703 . - . mRNA SPBC1826.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1826.01c" ; systematic_id "SPBC1826.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2619704 2625565 . - . mRNA SPBC1826.01c ; systematic_id "SPBC1826.01c" ; colour "7" ; gene "SPBC1826.01c ||| mot1" ; note "overlaps and extends SPBC25B2.12.c & SPBC6B1.01c" ; Alias "mot1" ; obsolete_name "SPBC25B2.12.c ||| SPBC6B1.01c" ; db_xref "SPD:39/39E09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YPL082C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0016887; ATPase activity
GO:0017025; TATA-binding protein binding
GO:0032568; general transcription from RNA polymerase II promoter" ; primary_name "mot1" ; product "TATA-binding protein associated factor Mot1 (predicted)" ;
chromosome2 GeneDB CDS 2619704 2625565 . - . mRNA SPBC1826.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 2621513 2621613 . + . misc_feature unknown_2056 ; note "nominal overlap with cosmid SPBC1826 and cosmid SPBC25B2" ;
chromosome2 GeneDB misc_feature 2624561 2624661 . + . misc_feature unknown_2057 ; note "nominal overlap with cosmid SPBC6B1 and cosmid SPBC1826" ;
chromosome2 GeneDB 5'-UTR 2625564 2625916 . - . mRNA SPBC1826.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1826.01c" ; systematic_id "SPBC1826.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2627289 2627593 . + . mRNA SPBC6B1.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.02" ; systematic_id "SPBC6B1.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2627594 2630455 . + . mRNA SPBC6B1.02 ; systematic_id "SPBC6B1.02" ; colour "2" ; gene "ppk30 ||| SPBC6B1.02" ; Alias "ppk30" ; db_xref "SPD:47/47D02" ; GO "GO:0030479; actin cortical patch
GO:0004674; protein serine/threonine kinase activity
GO:0000147; actin cortical patch assembly
GO:0006468; protein amino acid phosphorylation
GO:0007015; actin filament organization
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0007165; signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNL020C and YIL095W and YBR059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; qualifier=predicted; date=20090710" ; primary_name "ppk30" ; product "Ark1/Prk1 family protein kinase Ppk30" ;
chromosome2 GeneDB CDS 2627594 2630455 . + . mRNA SPBC6B1.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2630456 2630752 . + . mRNA SPBC6B1.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.02" ; systematic_id "SPBC6B1.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2631042 2631967 . - . mRNA SPBC6B1.03c ; db_xref "SPD:12/12H08" ; systematic_id "SPBC6B1.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR097C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0031505; cell wall organization and biogenesis (sensu Fungi)" ; gene "SPBC6B1.03c" ; product "Pal1 family protein" ;
chromosome2 GeneDB CDS 2631042 2631394 . - . mRNA SPBC6B1.03c ; colour "10" ;
chromosome2 GeneDB CDS 2631436 2631805 . - . mRNA SPBC6B1.03c ; colour "10" ;
chromosome2 GeneDB CDS 2631872 2631967 . - . mRNA SPBC6B1.03c ; colour "10" ;
chromosome2 GeneDB misc_feature 2631395 2631409 . - . misc_feature unknown_2058 ; colour "6" ; note "ttaactaaactttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2631430 2631435 . - . misc_feature unknown_2059 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2631806 2631828 . - . misc_feature unknown_2060 ; colour "6" ; note "ttaaccgatatcgtgtactatagtttag, splice branch and acce ptor" ;
chromosome2 GeneDB misc_feature 2631866 2631871 . - . misc_feature unknown_2061 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2632848 2633024 . + . mRNA SPBC6B1.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.04" ; systematic_id "SPBC6B1.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2633025 2634290 . + . mRNA SPBC6B1.04 ; systematic_id "SPBC6B1.04" ; colour "2" ; gene "mde4 ||| SPBC6B1.04" ; Alias "mde4" ; db_xref "SPD:20/20C06" ; GO "GO:0000775; chromosome, pericentric region
GO:0033551; monopolin complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0051456; attachment of spindle microtubules to kinetochore during meiosis II
GO:0051315; attachment of spindle microtubules to kinetochore during mitosis
GO:0045144; meiotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Mei4 DEpendent protein; cv=name_description; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDR439W; db_xref=PMID:17627824; date=20070718 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mde4" ; product "monopolin-like complex subunit Mde4" ;
chromosome2 GeneDB CDS 2633025 2634290 . + . mRNA SPBC6B1.04 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2634291 2634380 . + . mRNA SPBC6B1.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.04" ; systematic_id "SPBC6B1.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2634380 2634388 . - . mRNA SPBC6B1.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.05c" ; systematic_id "SPBC6B1.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2634389 2636594 . - . mRNA SPBC6B1.05c ; systematic_id "SPBC6B1.05c" ; colour "2" ; gene "SPBC6B1.05c" ; Alias "atg7" ; db_xref "SPD:38/38A01" ; GO "GO:0019787; small conjugating protein ligase activity
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032258; CVT pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR171W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atg7" ; product "ubiquitin-like conjugating enzyme Atg7" ;
chromosome2 GeneDB CDS 2634389 2634692 . - . mRNA SPBC6B1.05c ; colour "2" ;
chromosome2 GeneDB CDS 2634734 2635158 . - . mRNA SPBC6B1.05c ; colour "2" ;
chromosome2 GeneDB CDS 2635197 2635352 . - . mRNA SPBC6B1.05c ; colour "2" ;
chromosome2 GeneDB CDS 2635413 2635847 . - . mRNA SPBC6B1.05c ; colour "2" ;
chromosome2 GeneDB CDS 2635883 2636215 . - . mRNA SPBC6B1.05c ; colour "2" ;
chromosome2 GeneDB CDS 2636257 2636362 . - . mRNA SPBC6B1.05c ; colour "2" ;
chromosome2 GeneDB CDS 2636404 2636594 . - . mRNA SPBC6B1.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 2634693 2634709 . - . misc_feature unknown_2062 ; colour "6" ; note "ttaattatcaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2634728 2634733 . - . misc_feature unknown_2063 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2635159 2635170 . - . misc_feature unknown_2064 ; colour "6" ; note "ctaacaaagaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2635191 2635196 . - . misc_feature unknown_2065 ; colour "6" ; note "gtacaa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2635353 2635364 . - . misc_feature unknown_2066 ; colour "6" ; note "ctaacgttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2635407 2635412 . - . misc_feature unknown_2067 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2635848 2635858 . - . misc_feature unknown_2068 ; colour "6" ; note "ctaacacgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2635877 2635882 . - . misc_feature unknown_2069 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2636216 2636231 . - . misc_feature unknown_2070 ; colour "6" ; note "ttaacattatgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2636251 2636256 . - . misc_feature unknown_2071 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2636363 2636377 . - . misc_feature unknown_2072 ; colour "6" ; note "ctaatctgtccctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2636398 2636403 . - . misc_feature unknown_2073 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2636593 2636644 . - . mRNA SPBC6B1.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.05c" ; systematic_id "SPBC6B1.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 2636814 2637157 . + . LTR unknown_2074 ; note "tf2 type LTR" ;
chromosome2 GeneDB 3'-UTR 2637414 2637612 . - . mRNA SPBC6B1.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.06c" ; systematic_id "SPBC6B1.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2637613 2640009 . - . mRNA SPBC6B1.06c ; systematic_id "SPBC6B1.06c" ; colour "2" ; gene "SPBC6B1.06c ||| ubp14" ; Alias "ubp14" ; obsolete_name "ucp2" ; db_xref "SPD:38/38D06" ; GO "GO:0005654; nucleoplasm
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-UBP type; date=19700101 ||| term=orthologous to S. cerevisiae YBR058C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human USP5 ortholog; date=20101001" ; primary_name "ubp14" ; product "ubiquitin C-terminal hydrolase Ubp14" ;
chromosome2 GeneDB CDS 2637613 2639844 . - . mRNA SPBC6B1.06c ; colour "2" ;
chromosome2 GeneDB CDS 2639914 2640009 . - . mRNA SPBC6B1.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 2639845 2639858 . - . misc_feature unknown_2075 ; colour "6" ; note "ttaacaaacgttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2639908 2639913 . - . misc_feature unknown_2076 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_RNA 2640872 2641783 . + . misc_RNA SPNCRNA.403 ; db_xref "PMID:18488015" ; synonym "SPNG1684" ; systematic_id "SPNCRNA.403" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 2641916 2641989 . + . mRNA SPBC6B1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.07" ; systematic_id "SPBC6B1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2641990 2644710 . + . mRNA SPBC6B1.07 ; systematic_id "SPBC6B1.07" ; colour "2" ; gene "prp1 ||| zer1 ||| SPBC6B1.07" ; Alias "prp1" ; db_xref "SPD:47/47B06" ; synonym "zer1" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR055C; date=19700101 ||| term=complementation, does not functionally complement S. cerevisiae PRP6; db_xref=PMID:9286671; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, cell morphology, stubby cells; qualifier=ts; allele=prp1-4|prp1-1; db_xref=PMID:9286771; date=20100810" ; primary_name "prp1" ; product "U4/U6 x U5 tri-snRNP complex subunit Prp1" ;
chromosome2 GeneDB CDS 2641990 2644710 . + . mRNA SPBC6B1.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2644711 2644830 . + . mRNA SPBC6B1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.07" ; systematic_id "SPBC6B1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2644886 2645045 . - . mRNA SPBC6B1.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.08c" ; systematic_id "SPBC6B1.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2645046 2646593 . - . mRNA SPBC6B1.08c ; systematic_id "SPBC6B1.08c" ; colour "2" ; gene "ofd1 ||| SPBC6B1.08c" ; Alias "ofd1" ; db_xref "SPD:45/45A01" ; GO "GO:0005634; nucleus
GO:0030529; ribonucleoprotein complex
GO:0008143; poly(A) binding
GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0010620; negative regulation of transcription by transcrption factor catabolism
GO:0032436; positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0006415; translational termination
GO:0071456; cellular response to hypoxia" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER049W; date=19700101 ||| term=gene expression, transcriptionally regulated by Sre1; db_xref=PMID:18418381; cv=gene_ex; date=20080430 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ofd1" ; product "2-oxoglutarate and Fe(II) dioxygenase domain containing protein 1" ;
chromosome2 GeneDB CDS 2645046 2646593 . - . mRNA SPBC6B1.08c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2646592 2646646 . - . mRNA SPBC6B1.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.08c" ; systematic_id "SPBC6B1.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2647809 2648069 . - . mRNA SPBC6B1.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.12c" ; systematic_id "SPBC6B1.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2648070 2648464 . - . mRNA SPBC6B1.12c ; systematic_id "SPBC6B1.12c" ; colour "2" ; gene "SPBC6B1.12c ||| sus1" ; Alias "sus1" ; db_xref "SPD:52/52C06" ; GO "GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0016573; histone acetylation
GO:0006338; chromatin remodeling" ; controlled_curation "term=orthologous to S. cerevisiae YBR111W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "sus1" ; product "SAGA complex subunit Sus1" ;
chromosome2 GeneDB CDS 2648070 2648316 . - . mRNA SPBC6B1.12c ; colour "2" ;
chromosome2 GeneDB CDS 2648385 2648464 . - . mRNA SPBC6B1.12c ; colour "2" ;
chromosome2 GeneDB CDS_parts 2648745 2650914 . - . mRNA SPBC6B1.09c ; systematic_id "SPBC6B1.09c" ; colour "2" ; gene "nbs1 ||| SPBC6B1.09c" ; Alias "nbs1" ; db_xref "SPD:45/45A11" ; synonym "slr10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12944481; date=20100705 ||| term=phenotype, nuclear morphology defects; db_xref=PMID:12944481; date=20100705 ||| term=phenotype, sensitive to MMS; db_xref=PMID:12944481; date=20100705 ||| term=BRCT domain; db_xref=PMID:12944482; date=20060809 ||| term=orthologous to S. cerevisiae YDR369C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20090629 ||| term=disease associated, cancer; date=20090629 ||| term=disease associated, Nijmegen breakage syndrome; date=20060809 ||| term=warning, gene structure updated; cv=warning; date=20020204 ||| term=warning, gene structure updated; cv=warning; date=20030703 ||| term=human NBN ortholog; date=20100203" ; GO "GO:0030870; Mre11 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000077; DNA damage checkpoint
GO:0000724; double-strand break repair via homologous recombination
GO:0031573; intra-S DNA damage checkpoint
GO:0042138; meiotic DNA double-strand break formation
GO:0033127; regulation of histone phosphorylation
GO:0000723; telomere maintenance" ; primary_name "nbs1" ; product "Mre11 complex subunit Nbs1" ;
chromosome2 GeneDB CDS 2648745 2649008 . - . mRNA SPBC6B1.09c ; colour "2" ;
chromosome2 GeneDB CDS 2649055 2650223 . - . mRNA SPBC6B1.09c ; colour "2" ;
chromosome2 GeneDB CDS 2650266 2650345 . - . mRNA SPBC6B1.09c ; colour "2" ;
chromosome2 GeneDB CDS 2650385 2650533 . - . mRNA SPBC6B1.09c ; colour "2" ;
chromosome2 GeneDB CDS 2650638 2650726 . - . mRNA SPBC6B1.09c ; colour "2" ;
chromosome2 GeneDB CDS 2650765 2650818 . - . mRNA SPBC6B1.09c ; colour "2" ;
chromosome2 GeneDB CDS 2650878 2650914 . - . mRNA SPBC6B1.09c ; colour "2" ;
chromosome2 GeneDB misc_feature 2649009 2649026 . - . misc_feature unknown_2077 ; colour "6" ; note "ctaatctttttcatacag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2649009 2649054 . - . intron SPBC6B1.09c ; systematic_id "SPBC6B1.09c" ; note "confirmed intron (EMBL:AY269280)" ;
chromosome2 GeneDB misc_feature 2649049 2649054 . - . misc_feature unknown_2078 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 2650224 2650265 . - . intron SPBC6B1.09c ; systematic_id "SPBC6B1.09c" ; note "confirmed intron (EMBL:AY269280)" ;
chromosome2 GeneDB intron 2650346 2650384 . - . intron SPBC6B1.09c ; systematic_id "SPBC6B1.09c" ; note "confirmed intron (EMBL:AY269280)" ;
chromosome2 GeneDB misc_feature 2650534 2650548 . - . misc_feature unknown_2079 ; note "splice branch and acceptor" ;
chromosome2 GeneDB intron 2650534 2650637 . - . intron SPBC6B1.09c ; systematic_id "SPBC6B1.09c" ; note "confirmed intron (EMBL:AY269280)" ;
chromosome2 GeneDB intron 2650727 2650764 . - . intron SPBC6B1.09c ; systematic_id "SPBC6B1.09c" ; note "confirmed intron (EMBL:AY269280)" ;
chromosome2 GeneDB intron 2650819 2650877 . - . intron SPBC6B1.09c ; systematic_id "SPBC6B1.09c" ; note "confirmed intron (EMBL:AY269280)" ;
chromosome2 GeneDB 5'-UTR 2650913 2650936 . - . mRNA SPBC6B1.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.09c" ; systematic_id "SPBC6B1.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB intron 2651316 2651436 . + . intron unknown_2080 ; note "possible intron in 5' UTR of prp17; predicted by HMM_intron, Score=9.30" ;
chromosome2 GeneDB intron 2651501 2651544 . + . intron unknown_2081 ; note "possible intron in 5' UTR of prp17; predicted by HMM_intron, Score=13.64" ;
chromosome2 GeneDB 5'-UTR 2651604 2651645 . + . mRNA SPBC6B1.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.10" ; systematic_id "SPBC6B1.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2651646 2653484 . + . mRNA SPBC6B1.10 ; systematic_id "SPBC6B1.10" ; colour "2" ; gene "prp17 ||| SPBC6B1.10" ; Alias "prp17" ; db_xref "SPD:36/36G09" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR364C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "prp17" ; product "splicing factor Prp17" ;
chromosome2 GeneDB CDS 2651646 2651756 . + . mRNA SPBC6B1.10 ; colour "2" ;
chromosome2 GeneDB CDS 2651798 2652562 . + . mRNA SPBC6B1.10 ; colour "2" ;
chromosome2 GeneDB CDS 2652602 2653217 . + . mRNA SPBC6B1.10 ; colour "2" ;
chromosome2 GeneDB CDS 2653261 2653308 . + . mRNA SPBC6B1.10 ; colour "2" ;
chromosome2 GeneDB CDS 2653348 2653484 . + . mRNA SPBC6B1.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 2651757 2651762 . + . misc_feature unknown_2082 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2651785 2651797 . + . misc_feature unknown_2083 ; colour "6" ; note "ctaatcattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2652563 2652568 . + . misc_feature unknown_2084 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2652591 2652601 . + . misc_feature unknown_2085 ; colour "6" ; note "ctaatatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2653218 2653223 . + . misc_feature unknown_2086 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2653247 2653260 . + . misc_feature unknown_2087 ; colour "6" ; note "ctaactagttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2653252 2653544 . - . mRNA SPBC3E7.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.01" ; systematic_id "SPBC3E7.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2653309 2653314 . + . misc_feature unknown_2088 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2653335 2653347 . + . misc_feature unknown_2089 ; colour "6" ; note "ctaacatttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2653485 2654238 . + . mRNA SPBC6B1.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC6B1.10" ; systematic_id "SPBC6B1.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2653545 2659343 . - . mRNA SPBC3E7.01 ; systematic_id "SPBC3E7.01" ; colour "2" ; gene "fab1 ||| SPBC6B1.11c ||| SPBC3E7.01 ||| ste12" ; Alias "fab1" ; db_xref "SPD:31/31B10" ; synonym "ste12 ||| SPBC6B1.11c" ; GO "GO:0000329; vacuolar membrane
GO:0000285; 1-phosphatidylinositol-3-phosphate 5- kinase activity
GO:0000285; 1-phosphatidylinositol-3-phosphate 5- kinase activity
GO:0005524; ATP binding
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0006995; cellular response to nitrogen starvation
GO:0006886; intracellular protein transport
GO:0000750; pheromone-dependent signal transduction involved in conjugation with cellular fusion
GO:0046488; phosphatidylinositol metabolic process
GO:0007033; vacuole organization and biogenesis
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=gene expression, expressed in response to nitrogen starvation; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YFR019W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11895483; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sterile; date=20101013 ||| term=name description, STErile; date=20101013" ; primary_name "fab1" ; product "1-phosphatidylinositol-3-phosphate 5-kinase Fab1" ; EC_number "2.7.1.-" ;
chromosome2 GeneDB CDS 2653545 2659343 . - . mRNA SPBC3E7.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 2655334 2655390 . + . misc_feature unknown_2090 ; note "nominal overlap with cosmid SPBC3E7, EM:AL023534 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2655334 2655390 . - . misc_feature unknown_2091 ; note "nominal overlap with cosmid SPBC6B1, EM:AL021838 S.pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 2659342 2659412 . - . mRNA SPBC3E7.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.01" ; systematic_id "SPBC3E7.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2660139 2660489 . - . mRNA SPBC3E7.02c ; ID "SPBC3E7.02c" ; systematic_id "SPBC3E7.02c" ; note "mRNA from SPHSP16" ;
chromosome2 GeneDB CDS_parts 2660490 2660921 . - . mRNA SPBC3E7.02c ; systematic_id "SPBC3E7.02c" ; colour "2" ; gene "hsp16 ||| SPBC3E7.02c" ; Alias "hsp16" ; db_xref "SPD:31/31D08" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0034605; cellular response to heat
GO:0009267; cellular response to starvation
GO:0005515; protein binding
GO:0031990; mRNA export from nucleus during heat stress
GO:0051082; unfolded protein binding
GO:0034620; cellular response to unfolded protein
GO:0061077; chaperone-mediated protein folding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during nucleotide depletion; db_xref=PMID:11452028; cv=gene_ex; date=20060106 ||| term=misc functional group, chaperone; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YBR072W and YDR171W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "hsp16" ; product "heat shock protein Hsp16" ;
chromosome2 GeneDB CDS 2660490 2660921 . - . mRNA SPBC3E7.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2660922 2660992 . - . mRNA SPBC3E7.02c ; ID "SPBC3E7.02c" ; systematic_id "SPBC3E7.02c" ; note "mRNA from SPHSP16" ;
chromosome2 GeneDB misc_RNA 2661642 2662360 . + . misc_RNA SPNCRNA.540 ; db_xref "PMID:18488015" ; synonym "SPNGAF22" ; systematic_id "SPNCRNA.540" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 60 amino acids" ;
chromosome2 GeneDB CDS_parts 2661796 2661978 . + . mRNA SPBC3E7.17 ; systematic_id "SPBC3E7.17" ; colour "6" ; controlled_curation "term=warning, longest ORF in feature; cv=warning; date=20091113" ; product "dubious" ;
chromosome2 GeneDB CDS 2661796 2661978 . + . mRNA SPBC3E7.17 ; colour "6" ;
chromosome2 GeneDB CDS_parts 2662663 2664173 . - . mRNA SPBC3E7.04c ; systematic_id "SPBC3E7.04c" ; GO "GO:0005085; guanine-nucleotide exchange factor activity" ; controlled_curation "term=warning, gene structure updated; cv=warning; date=20091108 ||| term=warning, previously annotated as pseudogene; cv=warning; date=20091108 ||| term=warning, gene structure may be incorrect; cv=warning; date=20091108 ||| term=species distribution, conserved in Eukaryotes; date=20091108 ||| term=species distribution, conserved in Eukaryotes only; date=20091108 ||| term=species distribution, conserved in Vertebrates; date=20091108 ||| term=species distribution, conserved in Metazoa; date=20091108 ||| term=species distribution, conserved in Fungi; date=20091108 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091108" ; colour "10" ; gene "SPBC3E7.04c" ; product "Ric8 family guanine nulceotide exchange factor synembryn family" ;
chromosome2 GeneDB CDS 2662663 2662759 . - . mRNA SPBC3E7.04c ; colour "10" ;
chromosome2 GeneDB CDS 2662838 2663575 . - . mRNA SPBC3E7.04c ; colour "10" ;
chromosome2 GeneDB CDS 2663638 2663774 . - . mRNA SPBC3E7.04c ; colour "10" ;
chromosome2 GeneDB CDS 2663828 2663941 . - . mRNA SPBC3E7.04c ; colour "10" ;
chromosome2 GeneDB CDS 2664009 2664173 . - . mRNA SPBC3E7.04c ; colour "10" ;
chromosome2 GeneDB misc_feature 2662760 2662772 . - . misc_feature unknown_2092 ; note "ctgacgttggtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2662832 2662837 . - . misc_feature unknown_2093 ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2663576 2663591 . - . misc_feature unknown_2094 ; note "ctaattcttccttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2663632 2663637 . - . misc_feature unknown_2095 ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 2665629 2665665 . - . mRNA SPBC3E7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.05c" ; systematic_id "SPBC3E7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2665666 2667395 . - . mRNA SPBC3E7.05c ; db_xref "SPD:35/35G02" ; systematic_id "SPBC3E7.05c" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005743; mitochondrial inner membrane
GO:0042407; cristae formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR016W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=human IMMT ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC3E7.05c" ; product "human mitofilin ortholog (predicted)" ;
chromosome2 GeneDB CDS 2665666 2665722 . - . mRNA SPBC3E7.05c ; colour "7" ;
chromosome2 GeneDB CDS 2665761 2667293 . - . mRNA SPBC3E7.05c ; colour "7" ;
chromosome2 GeneDB CDS 2667333 2667395 . - . mRNA SPBC3E7.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 2665723 2665734 . - . misc_feature unknown_2096 ; note "ctaaccaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2665755 2665760 . - . misc_feature unknown_2097 ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2667294 2667304 . - . misc_feature unknown_2098 ; note "ttaacagaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2667327 2667332 . - . misc_feature unknown_2099 ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 2668157 2668206 . - . mRNA SPBC3E7.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.06c" ; systematic_id "SPBC3E7.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2668207 2669940 . - . mRNA SPBC3E7.06c ; systematic_id "SPBC3E7.06c" ; colour "2" ; gene "SPBC3E7.06c ||| fnx2" ; db_xref "SPD:35/35G09" ; Alias "fnx2" ; GO "GO:0031166; integral to vacuolar membrane
GO:0000329; vacuolar membrane
GO:0015182; L-asparagine transmembrane transporter activity
GO:0015188; L-isoleucine transmembrane transporter activity
GO:0015189; L-lysine transmembrane transporter activity
GO:0032975; amino acid import into vacuole" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR293W and YMR088C; db_xref=PMID:18503766; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "fnx2" ; product "vacuolar membrane amino acid uptake transporter Fnx2" ;
chromosome2 GeneDB CDS 2668207 2669940 . - . mRNA SPBC3E7.06c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2669939 2670085 . - . mRNA SPBC3E7.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.06c" ; systematic_id "SPBC3E7.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2671946 2671958 . - . mRNA SPBC3E7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.07c" ; systematic_id "SPBC3E7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2671959 2672744 . - . mRNA SPBC3E7.07c ; db_xref "SPD:09/09G11" ; systematic_id "SPBC3E7.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL225W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CXorf26 ortholog; date=20100226" ; colour "10" ; gene "SPBC3E7.07c" ; product "DUF757 family protein" ;
chromosome2 GeneDB CDS 2671959 2672035 . - . mRNA SPBC3E7.07c ; colour "10" ;
chromosome2 GeneDB CDS 2672174 2672397 . - . mRNA SPBC3E7.07c ; colour "10" ;
chromosome2 GeneDB CDS 2672453 2672507 . - . mRNA SPBC3E7.07c ; colour "10" ;
chromosome2 GeneDB CDS 2672551 2672578 . - . mRNA SPBC3E7.07c ; colour "10" ;
chromosome2 GeneDB CDS 2672640 2672651 . - . mRNA SPBC3E7.07c ; colour "10" ;
chromosome2 GeneDB CDS 2672697 2672744 . - . mRNA SPBC3E7.07c ; colour "10" ;
chromosome2 GeneDB misc_feature 2672036 2672049 . - . misc_feature unknown_2100 ; note "ctaacaagtcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2672168 2672173 . - . misc_feature unknown_2101 ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2672398 2672432 . - . misc_feature unknown_2102 ; note " ttaatttaaagttcaaattgcttactattgaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2672447 2672452 . - . misc_feature unknown_2103 ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2672508 2672519 . - . misc_feature unknown_2104 ; note "ataacaatttag, splice branch and acceptor (atypical branch but intron confirmed by homology)" ;
chromosome2 GeneDB misc_feature 2672545 2672550 . - . misc_feature unknown_2105 ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2672579 2672597 . - . misc_feature unknown_2106 ; note "ctgatttaaaaaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2672634 2672639 . - . misc_feature unknown_2107 ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2672652 2672665 . - . misc_feature unknown_2108 ; note "cttacagattttag, splice branch and acceptor (atypical branch)" ;
chromosome2 GeneDB misc_feature 2672691 2672696 . - . misc_feature unknown_2109 ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2672743 2672775 . - . mRNA SPBC3E7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.07c" ; systematic_id "SPBC3E7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2673019 2676357 . - . mRNA SPBC3E7.08c ; systematic_id "SPBC3E7.08c" ; colour "2" ; gene "rad13 ||| SPBC3E7.08c" ; Alias "rad13" ; db_xref "SPD:34/34A07" ; GO "GO:0006295; nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006289; nucleotide-excision repair" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=XP-G family; date=19700101 ||| term=orthologous to S. cerevisiae YGR258C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Xeroderma pigmentosum; date=20090908 ||| term=disease associated, cancer; date=20090908 ||| term=human ERCC5 ortholog; date=20100217" ; primary_name "rad13" ; product "DNA repair nuclease Rad13" ;
chromosome2 GeneDB CDS 2673019 2676357 . - . mRNA SPBC3E7.08c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2676356 2676513 . - . mRNA SPBC3E7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.08c" ; systematic_id "SPBC3E7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2676617 2678596 . + . mRNA SPBC3E7.09 ; db_xref "SPD:27/27C05" ; systematic_id "SPBC3E7.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR154W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c1orf9 ortholog; date=20100727" ; GO "GO:0034975; protein folding in the endoplasmic reticulum" ; gene "SPBC3E7.09" ; product "Sad1-UNC-like protein involved protein folding in the ER (predicted)" ;
chromosome2 GeneDB CDS 2676617 2678596 . + . mRNA SPBC3E7.09 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2678597 2678609 . + . mRNA SPBC3E7.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.09" ; systematic_id "SPBC3E7.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2678822 2678872 . + . mRNA SPBC3E7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.10" ; systematic_id "SPBC3E7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2678873 2680173 . + . mRNA SPBC3E7.10 ; systematic_id "SPBC3E7.10" ; colour "7" ; gene "fma1 ||| SPBC3E7.10" ; Alias "fma1" ; db_xref "SPD:22/22E12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human MetAP-1 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YLR244C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0004177; aminopeptidase activity
GO:0035551; proteolysis
GO:0035551; protein initiator methionine removal involved in protein maturation" ; primary_name "fma1" ; product "methionine aminopeptidase Fma1 (predicted)" ; EC_number "3.4.11.18" ; reserved_name "fma1" ;
chromosome2 GeneDB CDS 2678873 2678989 . + . mRNA SPBC3E7.10 ; colour "7" ;
chromosome2 GeneDB CDS 2679042 2679062 . + . mRNA SPBC3E7.10 ; colour "7" ;
chromosome2 GeneDB CDS 2679112 2679157 . + . mRNA SPBC3E7.10 ; colour "7" ;
chromosome2 GeneDB CDS 2679218 2680173 . + . mRNA SPBC3E7.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 2678990 2678995 . + . misc_feature unknown_2110 ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2679023 2679041 . + . misc_feature unknown_2111 ; note "ctaattcaaaaaaaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2679063 2679068 . + . misc_feature unknown_2112 ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2679093 2679111 . + . misc_feature unknown_2113 ; note "ttaacactaggtaatccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2679158 2679163 . + . misc_feature unknown_2114 ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2679202 2679217 . + . misc_feature unknown_2115 ; note "ctaatttgttcatcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2680174 2680283 . + . mRNA SPBC3E7.10 ; ID "SPBC3E7.10" ; systematic_id "SPBC3E7.10" ; note "mRNA from AU012446" ;
chromosome2 GeneDB 3'-UTR 2680226 2680432 . - . mRNA SPBC3E7.11c ; ID "SPBC3E7.11c" ; systematic_id "SPBC3E7.11c" ; note "mRNA from AU011790" ;
chromosome2 GeneDB CDS_parts 2680433 2681669 . - . mRNA SPBC3E7.11c ; db_xref "SPD:22/22C03" ; systematic_id "SPBC3E7.11c" ; colour "10" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER048C and YIR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC3E7.11c" ; product "DNAJ protein Caj1/Djp1-type (predicted)" ;
chromosome2 GeneDB CDS 2680433 2681338 . - . mRNA SPBC3E7.11c ; colour "10" ;
chromosome2 GeneDB CDS 2681467 2681539 . - . mRNA SPBC3E7.11c ; colour "10" ;
chromosome2 GeneDB CDS 2681581 2681669 . - . mRNA SPBC3E7.11c ; colour "10" ;
chromosome2 GeneDB misc_feature 2681339 2681357 . - . misc_feature unknown_2116 ; note "ctgaaataacaaagtatag, splice branch and acceptor (deviates from consensus but confirmed by homology)" ;
chromosome2 GeneDB misc_feature 2681461 2681466 . - . misc_feature unknown_2117 ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2681540 2681552 . - . misc_feature unknown_2118 ; note "ctaataaacttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2681575 2681580 . - . misc_feature unknown_2119 ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2681668 2681688 . - . mRNA SPBC3E7.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.11c" ; systematic_id "SPBC3E7.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2682069 2682389 . - . mRNA SPBC3E7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.12c" ; systematic_id "SPBC3E7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2682390 2683760 . - . mRNA SPBC3E7.12c ; systematic_id "SPBC3E7.12c" ; colour "7" ; gene "cfh4 ||| chr1 ||| SPBC3E7.12c" ; Alias "chr1" ; db_xref "SPD:21/21C04" ; synonym "cfh4" ; GO "GO:0051278; fungal-type cell wall polysaccharide biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Chs Four Homologue; cv=name_description; date=20060106 ||| term=gene expression, transcriptionally regulated by Ace2; evidence=TAS; db_xref=PMID:16678171; cv=gene_ex; date=20060818 ||| term=SEL1 repeat protein; date=20060818 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15449309; date=20060818 ||| term=orthologous to S. cerevisiae YBL061C and YDL203C and YER096W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "chr1" ; product "chitin synthase regulatory factor Chr1 (predicted)" ;
chromosome2 GeneDB CDS 2682390 2683760 . - . mRNA SPBC3E7.12c ; colour "7" ;
chromosome2 GeneDB CDS_parts 2684012 2684750 . - . mRNA SPBC3E7.13c ; systematic_id "SPBC3E7.13c" ; colour "7" ; gene "SPBC3E7.13c" ; Alias "syf2" ; db_xref "SPD:08/08H11" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YGR129W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; primary_name "syf2" ; product "splicing factor, SYF2 family (predicted)" ; reserved_name "syf2" ;
chromosome2 GeneDB CDS 2684012 2684635 . - . mRNA SPBC3E7.13c ; colour "7" ;
chromosome2 GeneDB CDS 2684685 2684750 . - . mRNA SPBC3E7.13c ; colour "7" ;
chromosome2 GeneDB misc_feature 2684636 2684650 . - . misc_feature unknown_2120 ; note "ctaaccaaagtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2684679 2684684 . - . misc_feature unknown_2121 ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2685208 2689975 . + . misc_feature unknown_2122 ; note "nominal overlap with cosmid SPBC3E7 and cosmid SPBC4F6" ;
chromosome2 GeneDB 5'-UTR 2685645 2685689 . + . mRNA SPBC3E7.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.14" ; systematic_id "SPBC3E7.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2685690 2686045 . + . mRNA SPBC3E7.14 ; systematic_id "SPBC3E7.14" ; colour "2" ; gene "smf1 ||| SPBC3E7.14 ||| SPBC4F6.01" ; Alias "smf1" ; db_xref "SPD:02/02D05" ; synonym "SPBC4F6.01" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005685; snRNP U1
GO:0005681; spliceosome complex
GO:0000395; nuclear mRNA 5'-splice site recognition
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YPR182W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "smf1" ; product "Sm snRNP core protein Smf1" ;
chromosome2 GeneDB CDS 2685690 2685886 . + . mRNA SPBC3E7.14 ; colour "2" ;
chromosome2 GeneDB CDS 2686006 2686045 . + . mRNA SPBC3E7.14 ; colour "2" ;
chromosome2 GeneDB misc_feature 2685887 2685892 . + . misc_feature unknown_2123 ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2685988 2686005 . + . misc_feature unknown_2124 ; note "ctaacgtgattttaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2686046 2686474 . + . mRNA SPBC3E7.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.14" ; systematic_id "SPBC3E7.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2686413 2686629 . - . mRNA SPBC3E7.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.15c" ; systematic_id "SPBC3E7.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2686630 2687965 . - . mRNA SPBC3E7.15c ; systematic_id "SPBC3E7.15c" ; colour "2" ; gene "lac1 ||| SPBC3E7.15c ||| SPBC4F6.02c ||| mug83" ; Alias "lac1" ; db_xref "SPD:20/20F10" ; synonym "SPBC4F6.02c ||| mug83" ; GO "GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0050291; sphingosine N-acyltransferase activity
GO:0070072; vacuolar proton transporting V-type ATPase complex assembly
GO:0046513; ceramide biosynthesis
GO:0007009; plasma membrane organization and biogenesis
GO:0071277; cellular response to calcium ion
GO:0042493; response to drug
GO:0042493; response to drug
GO:0042493; response to drug
GO:0042493; response to drug
GO:0034605; cellular response to heat
GO:0009636; response to toxin
GO:0009636; response to toxin
GO:0071294; cellular response to zinc ion
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL003C and YKL008C; date=19700101 ||| term=phenotype, resistance to drugs; qualifier=overexpression; cv=phenotype; db_xref=PMID:18441123; date=20080731 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, localization defects, sterol distribution defects; cv=phenotype; db_xref=PMID:18441123; date=20091215" ; primary_name "lac1" ; product "sphingosine N-acyltransferase Lac1" ;
chromosome2 GeneDB CDS 2686630 2687736 . - . mRNA SPBC3E7.15c ; colour "2" ;
chromosome2 GeneDB CDS 2687918 2687965 . - . mRNA SPBC3E7.15c ; colour "2" ;
chromosome2 GeneDB misc_feature 2687737 2687757 . - . misc_feature unknown_2125 ; colour "6" ; note "ctaattgccttcttcatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2687912 2687917 . - . misc_feature unknown_2126 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2687966 2688005 . - . mRNA SPBC3E7.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.15c" ; systematic_id "SPBC3E7.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2688416 2688591 . - . misc_feature unknown_2127 ; note "mRNA from AU010748 ||| 3'UTR fully annotated on cosmid c3E7" ;
chromosome2 GeneDB 3'-UTR 2688416 2688591 . - . mRNA SPBC3E7.16c ; Alias "leu3" ; ID "SPBC3E7.16c" ; systematic_id "SPBC3E7.16c" ; primary_name "leu3" ; note "mRNA from AU010748" ;
chromosome2 GeneDB CDS_parts 2688592 2690346 . - . mRNA SPBC3E7.16c ; systematic_id "SPBC3E7.16c" ; colour "2" ; gene "leu3 ||| SPBC3E7.16c ||| SPBC4F6.03c" ; Alias "leu3" ; db_xref "SPD:36/36B01" ; synonym "SPBC4F6.03c" ; GO "GO:0003852; 2-isopropylmalate synthase activity
GO:0009098; leucine biosynthesis
GO:0009098; leucine biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL104C and YOR108W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "leu3" ; product "2-isopropylmalate synthase Leu3" ; EC_number "2.3.3.13" ;
chromosome2 GeneDB CDS 2688592 2690346 . - . mRNA SPBC3E7.16c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2690345 2690594 . - . mRNA SPBC3E7.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3E7.16c" ; systematic_id "SPBC3E7.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2690818 2690830 . + . mRNA SPBC4F6.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.04" ; systematic_id "SPBC4F6.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2690831 2691524 . + . mRNA SPBC4F6.04 ; systematic_id "SPBC4F6.04" ; colour "7" ; gene "rpl2502 ||| rpl25b ||| rpl23a-2 ||| SPBC4F6.04" ; Alias "rpl2502" ; db_xref "SPD:40/40A06" ; synonym "rpl25b ||| rpl23a-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0000027; ribosomal large subunit assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL127W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "rpl2502" ; product "60S ribosomal protein L25 (predicted)" ;
chromosome2 GeneDB CDS 2690831 2690928 . + . mRNA SPBC4F6.04 ; colour "7" ;
chromosome2 GeneDB CDS 2691197 2691524 . + . mRNA SPBC4F6.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 2690929 2690934 . + . misc_feature unknown_2128 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 2690929 2691196 . + . intron SPBC4F6.04 ; systematic_id "SPBC4F6.04" ; note "intron confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 2691184 2691196 . + . misc_feature unknown_2129 ; colour "6" ; note "ctaattgttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2691525 2691581 . + . mRNA SPBC4F6.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.04" ; systematic_id "SPBC4F6.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2691758 2692017 . - . mRNA SPBC4F6.05c ; ID "SPBC4F6.05c" ; systematic_id "SPBC4F6.05c" ; note "mRNA from AU010970" ;
chromosome2 GeneDB CDS_parts 2692018 2693172 . - . mRNA SPBC4F6.05c ; db_xref "SPD:18/18C04" ; systematic_id "SPBC4F6.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR080W and YFL048C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030134; ER to Golgi transport vesicle
GO:0000139; Golgi membrane
GO:0005529; sugar binding
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; gene "SPBC4F6.05c" ; product "lectin family glycoprotein receptor (predicted)" ;
chromosome2 GeneDB CDS 2692018 2693172 . - . mRNA SPBC4F6.05c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2693171 2693404 . - . mRNA SPBC4F6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.05c" ; systematic_id "SPBC4F6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2694334 2695167 . + . mRNA SPBC4F6.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.06" ; systematic_id "SPBC4F6.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2695168 2697843 . + . mRNA SPBC4F6.06 ; systematic_id "SPBC4F6.06" ; colour "2" ; db_xref "SPD:33/33H07" ; Alias "kin1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:2236039; date=19700101 ||| term=orthologous to S. cerevisiae YLR096W and YDR122W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0010687; site selection involved in cell cycle cytokinesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0060632; regulation of microtubule-based movement
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0004674; protein serine/threonine kinase activity
GO:0005737; cytoplasm
GO:0051286; cell tip
GO:0005524; ATP binding
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0051286; cell tip
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0015630; microtubule cytoskeleton" ; primary_name "kin1" ; product "microtubule affinity-regulating kinase Kin1" ;
chromosome2 GeneDB CDS 2695168 2697843 . + . mRNA SPBC4F6.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2697844 2698128 . + . mRNA SPBC4F6.06 ; ID "SPBC4F6.06" ; systematic_id "SPBC4F6.06" ; note "mRNA from AU011629" ;
chromosome2 GeneDB 3'-UTR 2698184 2698288 . - . mRNA SPBC4F6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.07c" ; systematic_id "SPBC4F6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2698289 2700359 . - . mRNA SPBC4F6.07c ; db_xref "SPD:27/27G01" ; systematic_id "SPBC4F6.07c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0004004; ATP-dependent RNA helicase activity
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YBR142W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC4F6.07c" ; product "ATP-dependent RNA helicase Mak5 (predicted)" ;
chromosome2 GeneDB CDS 2698289 2698934 . - . mRNA SPBC4F6.07c ; colour "7" ;
chromosome2 GeneDB CDS 2698972 2699260 . - . mRNA SPBC4F6.07c ; colour "7" ;
chromosome2 GeneDB CDS 2699312 2700167 . - . mRNA SPBC4F6.07c ; colour "7" ;
chromosome2 GeneDB CDS 2700204 2700359 . - . mRNA SPBC4F6.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 2698935 2698946 . - . misc_feature unknown_2130 ; colour "6" ; note "ctaactaacaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2698966 2698971 . - . misc_feature unknown_2131 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2699261 2699275 . - . misc_feature unknown_2132 ; colour "6" ; note "ctaacgactgcatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2699261 2699311 . - . intron SPBC4F6.07c ; systematic_id "SPBC4F6.07c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2699306 2699311 . - . misc_feature unknown_2133 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2700168 2700178 . - . misc_feature unknown_2134 ; colour "6" ; note "ttaacaaacag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2700168 2700203 . - . intron SPBC4F6.07c ; systematic_id "SPBC4F6.07c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2700198 2700203 . - . misc_feature unknown_2135 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2700358 2700381 . - . mRNA SPBC4F6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.07c" ; systematic_id "SPBC4F6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2700735 2700972 . - . mRNA SPBC4F6.08c ; ID "SPBC4F6.08c" ; systematic_id "SPBC4F6.08c" ; note "mRNA from AU010419" ;
chromosome2 GeneDB CDS_parts 2700973 2701249 . - . mRNA SPBC4F6.08c ; systematic_id "SPBC4F6.08c" ; colour "7" ; gene "SPBC4F6.08c ||| mrpl39" ; Alias "mrpl39" ; db_xref "SPD:01/01C07" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl39" ; product "mitochondrial ribosomal protein subunit L39 (predicted)" ;
chromosome2 GeneDB CDS 2700973 2701015 . - . mRNA SPBC4F6.08c ; colour "7" ;
chromosome2 GeneDB CDS 2701074 2701175 . - . mRNA SPBC4F6.08c ; colour "7" ;
chromosome2 GeneDB CDS 2701227 2701249 . - . mRNA SPBC4F6.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 2701016 2701034 . - . misc_feature unknown_2136 ; colour "6" ; note "ctaatgaatgaacccatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2701016 2701073 . - . intron SPBC4F6.08c ; systematic_id "SPBC4F6.08c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2701068 2701073 . - . misc_feature unknown_2137 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2701176 2701193 . - . misc_feature unknown_2138 ; colour "6" ; note "ttaacatttatttttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2701221 2701226 . - . misc_feature unknown_2139 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2701248 2701592 . - . mRNA SPBC4F6.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.08c" ; systematic_id "SPBC4F6.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2701250 2704772 . + . misc_feature unknown_2140 ; note "low complexity gene-free region" ;
chromosome2 GeneDB misc_feature 2702684 2703373 . + . misc_feature unknown_2141 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1695" ;
chromosome2 GeneDB 5'-UTR 2704680 2705522 . + . mRNA SPBC4F6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.09" ; systematic_id "SPBC4F6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2704773 2704920 . + . misc_RNA SPNCRNA.106 ; db_xref "EMBL:AU008311" ; systematic_id "SPNCRNA.106" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU008311; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU008311; date=20050412 ||| term=genome organization, low complexity gene free region; qualifier=predicted; cv=genome_org; date=20050412" ; gene "SPNCRNA.106" ; product "non-coding RNA (predicted)" ; note "mRNA from AU008311" ;
chromosome2 GeneDB CDS_parts 2705523 2707361 . + . mRNA SPBC4F6.09 ; systematic_id "SPBC4F6.09" ; colour "2" ; gene "str1 ||| SPBC4F6.09" ; Alias "str1" ; db_xref "SPD:36/36G10" ; GO "GO:0015343; siderophore-iron transporter activity
GO:0015892; siderophore-iron transport
GO:0006879; iron ion homeostasis
GO:0016020; membrane
GO:0033214; iron assimilation by chelation and transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL040C and YHL047C and YOL158C and YKR106W and YCL073C and YEL065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "str1" ; product "siderophore-iron transporter Str1" ;
chromosome2 GeneDB CDS 2705523 2707361 . + . mRNA SPBC4F6.09 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2707362 2707595 . + . mRNA SPBC4F6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.09" ; systematic_id "SPBC4F6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2707971 2708075 . + . mRNA SPBC4F6.10 ; ID "SPBC4F6.10" ; db_xref "EMBL:DQ665299" ; systematic_id "SPBC4F6.10" ;
chromosome2 GeneDB CDS_parts 2708076 2709793 . + . mRNA SPBC4F6.10 ; systematic_id "SPBC4F6.10" ; colour "7" ; gene "vps901 ||| vps9a ||| SPBC4F6.10" ; Alias "vps901" ; db_xref "SPD:25/25H02" ; synonym "vps9a" ; GO "GO:0006623; protein targeting to vacuole
GO:0005829; cytosol
GO:0005085; guanyl-nucleotide exchange factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CUE domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YML097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, frameshifted; date=20090819 ||| term=warning, sequence error in genomic data; date=20090819 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "vps901" ; product "guanyl-nucleotide exchange factor Vps901 (predicted)" ;
chromosome2 GeneDB CDS 2708076 2709415 . + . mRNA SPBC4F6.10 ; colour "7" ;
chromosome2 GeneDB CDS 2709418 2709793 . + . mRNA SPBC4F6.10 ; colour "7" ;
chromosome2 GeneDB conflict 2709415 2709416 . + . conflict unknown_2142 ; citation "[1]" ; note "c18A7 has sequence 4033 here- checking GCACAAGGCCGAGAGCCTCTTCTCATAGTGGCT" ;
chromosome2 GeneDB 3'-UTR 2709690 2709832 . + . mRNA SPBC4F6.10 ; ID "SPBC4F6.10" ; db_xref "EMBL:DQ665299" ; systematic_id "SPBC4F6.10" ;
chromosome2 GeneDB CDS_parts 2709848 2711494 . - . mRNA SPBC4F6.11c ; db_xref "SPD:34/34F03" ; systematic_id "SPBC4F6.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPBC4F6.11c" ; product "asparagine synthase (predicted)" ;
chromosome2 GeneDB CDS 2709848 2711494 . - . mRNA SPBC4F6.11c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2711493 2711551 . - . mRNA SPBC4F6.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.11c" ; systematic_id "SPBC4F6.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2712207 2712511 . + . mRNA SPBC4F6.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.12" ; systematic_id "SPBC4F6.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2712512 2713884 . + . mRNA SPBC4F6.12 ; systematic_id "SPBC4F6.12" ; colour "2" ; gene "SPBC4F6.12 ||| pxl1" ; Alias "pxl1" ; db_xref "SPD:21/21C07" ; GO "; contractile ring
GO:0005826; contractile ring
GO:0031097; medial ring
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0000916; contractile ring contraction involved in cytokinesis
GO:0000915; cytokinesis, contractile ring formation
GO:0000915; cytokinesis, contractile ring formation
GO:0000915; cytokinesis, contractile ring formation
GO:0034259; negative regulation of Rho GTPase activity
GO:0035024; negative regulation of Rho protein signal transduction
GO:0035023; regulation of Rho protein signal transduction
GO:0071775; regulation of cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18256290; date=20080211 ||| term=phenotype, cytokinesis defects, splitting of the actinomyosin ring; qualifier=deletion|during_anaphase_B; cv=phenotype; db_xref=PMID:18272786; date=20080731 ||| term=orthologous to S. cerevisiae YKR090W; date=19700101 ||| term=LIM domain; qualifier=required; db_xref=PMID:18256290; date=20080211 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, N-terminal region is sufficent for localization; db_xref=PMID:18256290; date=20080211 ||| term=misc, present in a complex with Rlc1 and Cdc15; db_xref=PMID:18256290; cv=misc; date=20080211" ; primary_name "pxl1" ; product "paxillin-like protein Pxl1" ;
chromosome2 GeneDB CDS 2712512 2712540 . + . mRNA SPBC4F6.12 ; colour "2" ;
chromosome2 GeneDB CDS 2712597 2713884 . + . mRNA SPBC4F6.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 2712541 2712546 . + . misc_feature unknown_2143 ; colour "6" ; note "gtaatc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2712579 2712596 . + . misc_feature unknown_2144 ; colour "6" ; note "ctaacttcgtttttgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2713885 2714079 . + . mRNA SPBC4F6.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.12" ; systematic_id "SPBC4F6.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2714247 2714423 . - . mRNA SPBC4F6.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.13c" ; systematic_id "SPBC4F6.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2714424 2716634 . - . mRNA SPBC4F6.13c ; db_xref "SPD:38/38A05" ; systematic_id "SPBC4F6.13c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC4F6.13c" ; product "WD repeat/BOP1NT protein (predicted)" ;
chromosome2 GeneDB CDS 2714424 2716634 . - . mRNA SPBC4F6.13c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2716633 2716668 . - . mRNA SPBC4F6.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.13c" ; systematic_id "SPBC4F6.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2716865 2718889 . + . mRNA SPBC4F6.14 ; db_xref "SPD:37/37C01" ; systematic_id "SPBC4F6.14" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YPL043W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC4F6.14" ; product "RNA-binding protein (predicted)" ;
chromosome2 GeneDB CDS 2716865 2718889 . + . mRNA SPBC4F6.14 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2718890 2718973 . + . mRNA SPBC4F6.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.14" ; systematic_id "SPBC4F6.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2719029 2719149 . - . mRNA SPBC4F6.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.15c" ; systematic_id "SPBC4F6.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2719150 2720138 . - . mRNA SPBC4F6.15c ; systematic_id "SPBC4F6.15c" ; colour "2" ; gene "swi10 ||| rad23 ||| SPBC4F6.15c" ; Alias "swi10" ; db_xref "SPD:32/32C03" ; synonym "rad23" ; GO "GO:0000109; nucleotide-excision repair complex
GO:0046982; protein heterodimerization activity
GO:0000014; single-stranded DNA specific endodeoxyribonuclease activity
GO:0007534; gene conversion at mating-type locus
GO:0006296; nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0031593; polyubiquitin binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1475195; date=20080115 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|low_penetrance; db_xref=PMID:1485195; date=20100802 ||| term=human ERCC1 ortholog; date=19700101 ||| term=helix-hairpin-helix; date=1970010 1 ||| term=orthologous to S. cerevisiae YML095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complemented by human ERCC1; db_xref=PMID:9207030; date=20101012" ; primary_name "swi10" ; product "DNA repair endonuclease Swi10" ; EC_number "3.1.-.-" ;
chromosome2 GeneDB CDS 2719150 2719657 . - . mRNA SPBC4F6.15c ; colour "2" ;
chromosome2 GeneDB CDS 2719718 2719803 . - . mRNA SPBC4F6.15c ; colour "2" ;
chromosome2 GeneDB CDS 2719847 2719864 . - . mRNA SPBC4F6.15c ; colour "2" ;
chromosome2 GeneDB CDS 2719992 2720138 . - . mRNA SPBC4F6.15c ; colour "2" ;
chromosome2 GeneDB misc_feature 2719658 2719676 . - . misc_feature unknown_2145 ; colour "6" ; note "ctgacttacatcatgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2719712 2719717 . - . misc_feature unknown_2146 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2719841 2719846 . - . misc_feature unknown_2147 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2719865 2719878 . - . misc_feature unknown_2148 ; colour "6" ; note "ttaacttcttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2719986 2719991 . - . misc_feature unknown_2149 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2720137 2720183 . - . mRNA SPBC4F6.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.15c" ; systematic_id "SPBC4F6.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2720540 2720993 . - . mRNA SPBC4F6.16c ; ID "SPBC4F6.16c" ; systematic_id "SPBC4F6.16c" ; note "mRNA from AU006956" ;
chromosome2 GeneDB intron 2720591 2720757 . - . intron unknown_2150 ; colour "2" ; note "confirmed intron; in UTR of swi10 or SPBC4F6; spans snoRNA" ;
chromosome2 GeneDB snoRNA 2720648 2720733 . - . snoRNA SPSNORNA.26 ; Alias "snoU18" ; systematic_id "SPSNORNA.26" ; controlled_curation "term=orthologous to S. cerevisiae U18; date=20070104" ; primary_name "snoU18" ; gene "snoU18 ||| SPSNORNA.26" ; product "small nucleolar RNA U18" ;
chromosome2 GeneDB CDS_parts 2720994 2722397 . - . mRNA SPBC4F6.16c ; systematic_id "SPBC4F6.16c" ; colour "2" ; gene "ero11 ||| SPBC4F6.16c" ; Alias "ero11" ; db_xref "SPD:21/21G03" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0015035; protein disulfide oxidoreductase activity
GO:0006457; protein folding
GO:0006467; protein thiol-disulfide exchange
GO:0034975; protein folding in the endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML130C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; primary_name "ero11" ; product "ER oxidoreductin Ero1a" ;
chromosome2 GeneDB CDS 2720994 2722397 . - . mRNA SPBC4F6.16c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2722396 2722492 . - . mRNA SPBC4F6.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.16c" ; systematic_id "SPBC4F6.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2723119 2723234 . - . mRNA SPBC4F6.17c ; ID "SPBC4F6.17c" ; systematic_id "SPBC4F6.17c" ; note "mRNA from AU006661" ;
chromosome2 GeneDB CDS_parts 2723235 2725646 . - . mRNA SPBC4F6.17c ; db_xref "SPD:28/28F09" ; systematic_id "SPBC4F6.17c" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0051082; unfolded protein binding
GO:0034605; cellular response to heat
GO:0000002; mitochondrial genome maintenance
GO:0010892; positive regulation of mitochondrial translation in response to stress
GO:0030150; protein import into mitochondrial matrix
GO:0043335; protein unfolding
GO:0042026; protein refolding
GO:0050821; protein stabilization" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDR258C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC4F6.17c" ; product "mitochondrial heatshock protein Hsp78 (predicted)" ;
chromosome2 GeneDB CDS 2723235 2725646 . - . mRNA SPBC4F6.17c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2725645 2725683 . - . mRNA SPBC4F6.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4F6.17c" ; systematic_id "SPBC4F6.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2726357 2727302 . - . mRNA SPBC4F6.18c ; ID "SPBC4F6.18c" ; systematic_id "SPBC4F6.18c" ; note "mRNA from AU013255" ;
chromosome2 GeneDB CDS_parts 2727303 2727913 . - . mRNA SPBC4F6.18c ; systematic_id "SPBC4F6.18c" ; colour "2" ; gene "arf1 ||| SPBC4F6.18c" ; Alias "arf1" ; db_xref "SPD:39/39H12" ; GO "GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL137W and YDL192W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arf1" ; product "ADP-ribosylation factor, Arf family Arf1" ;
chromosome2 GeneDB CDS 2727303 2727794 . - . mRNA SPBC4F6.18c ; colour "2" ;
chromosome2 GeneDB CDS 2727863 2727913 . - . mRNA SPBC4F6.18c ; colour "2" ;
chromosome2 GeneDB misc_feature 2727795 2727819 . - . misc_feature unknown_2151 ; colour "6" ; note "ttaatagtatcgtttgtttatgtag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2727795 2727862 . - . intron SPBC4F6.18c ; systematic_id "SPBC4F6.18c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2727857 2727862 . - . misc_feature unknown_2152 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2727914 2727959 . - . mRNA SPBC4F6.18c ; ID "SPBC4F6.18c" ; systematic_id "SPBC4F6.18c" ; note "mRNA from SPARF1A" ;
chromosome2 GeneDB misc_RNA 2728310 2728918 . + . misc_RNA SPNCRNA.405 ; db_xref "PMID:18488015" ; synonym "SPNG1698" ; systematic_id "SPNCRNA.405" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_feature 2728367 2729985 . + . misc_feature unknown_2153 ; note "nominal overlap with cosmid SPBC18A7 and cosmid SPBC4F6" ;
chromosome2 GeneDB 5'-UTR 2729256 2729257 . + . mRNA SPBC18A7.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18A7.01" ; systematic_id "SPBC18A7.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2729258 2730613 . + . mRNA SPBC18A7.01 ; systematic_id "SPBC18A7.01" ; colour "7" ; gene "SPBC4F6.19c ||| SPBC18A7.01" ; Alias "SPBC4F6.19c" ; db_xref "SPD:21/21A09" ; synonym "SPBC4F6.19c" ; GO "GO:0016805; dipeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=19700101 ||| term=species distribution, conserved in Vertebrates; date=19700101 ||| term=species distribution, conserved in Metazoa; date=19700101" ; primary_name "SPBC4F6.19c" ; product "X-Pro dipeptidase (predicted)" ; EC_number "3.4.13.-" ;
chromosome2 GeneDB CDS 2729258 2730613 . + . mRNA SPBC18A7.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2730520 2730735 . - . mRNA SPBC18A7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18A7.02c" ; systematic_id "SPBC18A7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2730614 2730690 . + . mRNA SPBC18A7.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18A7.01" ; systematic_id "SPBC18A7.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2730736 2732213 . - . mRNA SPBC18A7.02c ; db_xref "SPD:23/23G12" ; systematic_id "SPBC18A7.02c" ; colour "7" ; GO "GO:0004872; receptor activity
GO:0007166; cell surface receptor linked signal transduction
GO:0005887; integral to plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; qualifier=inferred_from_context; date=19700101 ||| term=orthologous to S. cerevisiae YKL039W and YHL017W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC18A7.02c" ; product "seven transmembrane receptor-like protein (predicted)" ;
chromosome2 GeneDB CDS 2730736 2731961 . - . mRNA SPBC18A7.02c ; colour "7" ;
chromosome2 GeneDB CDS 2732013 2732091 . - . mRNA SPBC18A7.02c ; colour "7" ;
chromosome2 GeneDB CDS 2732145 2732213 . - . mRNA SPBC18A7.02c ; colour "7" ;
chromosome2 GeneDB misc_feature 2731962 2731974 . - . misc_feature unknown_2154 ; colour "6" ; note "cttacgacgttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2732007 2732012 . - . misc_feature unknown_2155 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2732092 2732112 . - . misc_feature unknown_2156 ; colour "6" ; note "ctaactgcggcttcttgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2732139 2732144 . - . misc_feature unknown_2157 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2732212 2732336 . - . mRNA SPBC18A7.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC18A7.02c" ; systematic_id "SPBC18A7.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2732531 2733365 . + . misc_feature unknown_2158 ; note "nominal overlap with cosmid SPBC18A7, EM:AL080287 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 2732531 2733365 . - . misc_feature unknown_2159 ; note "nominal overlap with cosmid SPBC336, EM:AL121815 S. pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 2733218 2733295 . + . mRNA SPBC336.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.01" ; systematic_id "SPBC336.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2733296 2735972 . + . mRNA SPBC336.01 ; systematic_id "SPBC336.01" ; colour "2" ; gene "fbh1 ||| fdh1 ||| fdh ||| SPBC336.01" ; Alias "fbh1" ; db_xref "SPD:38/38H09" ; synonym "fdh1 ||| fdh" ; GO "GO:0005634; nucleus
GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0017116; single-stranded DNA-dependent ATP- dependent DNA helicase activity
GO:0006310; DNA recombination
GO:0031297; collapsed replication fork processing
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0005634; nucleus
GO:0000018; regulation of DNA recombination
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:16135800; date=20100730 ||| term=F-box protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:16135800; date=20101004" ; primary_name "fbh1" ; product "DNA helicase I" ;
chromosome2 GeneDB CDS 2733296 2735105 . + . mRNA SPBC336.01 ; colour "2" ;
chromosome2 GeneDB CDS 2735146 2735972 . + . mRNA SPBC336.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 2733296 2733365 . + . misc_feature unknown_2160 ; note "SPBC336.01, Complete CDS in c336" ;
chromosome2 GeneDB misc_feature 2733907 2733912 . + . misc_feature unknown_2161 ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2734034 2734053 . + . misc_feature unknown_2162 ; note "ctaattacttcgtgtactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2735106 2735111 . + . misc_feature unknown_2163 ; colour "6" ; note "gtttgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2735133 2735145 . + . misc_feature unknown_2164 ; colour "6" ; note "ctaacgtatacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2735973 2736020 . + . mRNA SPBC336.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.01" ; systematic_id "SPBC336.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 2736508 2736743 . + . LTR unknown_2165 ; note "TF1 LTR" ;
chromosome2 GeneDB CDS_parts 2736963 2737944 . + . mRNA SPBC336.02 ; systematic_id "SPBC336.02" ; colour "7" ; gene "SPBC336.02" ; obsolete_name "dim1" ; db_xref "SPD:41/41H06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL266W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene name conflict; cv=warning; date=20100126" ; GO "GO:0000179; rRNA (adenine-N6,N6-)- dimethyltransferase activity
GO:0006364; 35S primary transcript processing
GO:0000154; rRNA modification
GO:0005730; nucleolus" ; product "18S rRNA dimethylase (predicted)" ; EC_number "2.1.1.-" ;
chromosome2 GeneDB CDS 2736963 2737097 . + . mRNA SPBC336.02 ; colour "7" ;
chromosome2 GeneDB CDS 2737156 2737944 . + . mRNA SPBC336.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 2737098 2737103 . + . misc_feature unknown_2166 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2737138 2737155 . + . misc_feature unknown_2167 ; colour "6" ; note "ctaacataagacaaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2737945 2738059 . + . mRNA SPBC336.02 ; ID "SPBC336.02" ; systematic_id "SPBC336.02" ; note "mRNA from AU014441" ;
chromosome2 GeneDB misc_RNA 2738941 2739592 . + . misc_RNA SPNCRNA.406 ; db_xref "PMID:18488015" ; synonym "SPNG1702" ; systematic_id "SPNCRNA.406" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 2739714 2740201 . + . mRNA SPBC336.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.03" ; systematic_id "SPBC336.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2740202 2743165 . + . mRNA SPBC336.03 ; systematic_id "SPBC336.03" ; colour "2" ; gene "efc25 ||| SPBC336.03" ; Alias "efc25" ; db_xref "SPD:47/47F03" ; GO "GO:0005088; Ras guanyl-nucleotide exchange factor activity
GO:0007163; establishment and/or maintenance of cell polarity
GO:0032488; Cdc42 protein signal tansduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, round cells; qualifier=deletion; cv=phenotype; db_xref=PMID:9256078; date=20100630 ||| term=pathway, Ras1-Scd; db_xref=PMID:12052869; cv=pathway; date=19700101 ||| term=orthologous to S. cerevisiae YLR310C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Ras1; db_xref=PMID:12052869; date=20100630 ||| term=name description, Exchange Factor Cdc25-like; date=20100630" ; primary_name "efc25" ; product "Ras1 guanyl-nucleotide exchange factor Efc25" ;
chromosome2 GeneDB CDS 2740202 2743165 . + . mRNA SPBC336.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2743166 2743391 . + . mRNA SPBC336.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.03" ; systematic_id "SPBC336.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2743780 2743842 . + . mRNA SPBC336.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.04" ; systematic_id "SPBC336.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2743843 2747155 . + . mRNA SPBC336.04 ; systematic_id "SPBC336.04" ; colour "2" ; gene "cdc6 ||| pol3 ||| pold ||| mis10 ||| SPBC336.04" ; Alias "cdc6" ; db_xref "SPD:34/34A06" ; synonym "pol3 ||| pold ||| mis10" ; GO "GO:0043625; delta DNA polymerase complex
GO:0043596; nuclear replication fork
GO:0008408; 3'-5' exonuclease activity
GO:0003887; DNA-directed DNA polymerase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043137; DNA replication, removal of RNA primer
GO:0000731; DNA synthesis during DNA repair
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-ZnF type; date=19700101 ||| term=orthologous to S. cerevisiae YDL102W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=20070725 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; db_xref=PMID:19966286; date=20100311 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705" ; primary_name "cdc6" ; product "DNA polymerase delta catalytic subunit Cdc6" ; EC_number "2.7.7.7" ;
chromosome2 GeneDB CDS 2743843 2744071 . + . mRNA SPBC336.04 ; colour "2" ;
chromosome2 GeneDB CDS 2744124 2747155 . + . mRNA SPBC336.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 2744072 2744077 . + . misc_feature unknown_2168 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2744109 2744123 . + . misc_feature unknown_2169 ; colour "6" ; note "ctgactccttgatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2747156 2747467 . + . mRNA SPBC336.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.04" ; systematic_id "SPBC336.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2747191 2748327 . - . mRNA SPBC336.05c ; db_xref "SPD:17/17H10" ; systematic_id "SPBC336.05c" ; colour "7" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0031047; RNA-mediated gene silencing
GO:0008173; RNA methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC336.05c" ; product "S-adenosylmethionine-dependent methyltransferase (predicted)" ;
chromosome2 GeneDB CDS 2747191 2748327 . - . mRNA SPBC336.05c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2748734 2748790 . - . mRNA SPBC336.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.06c" ; systematic_id "SPBC336.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2748791 2749769 . - . mRNA SPBC336.06c ; systematic_id "SPBC336.06c" ; colour "7" ; gene "rnh1 ||| SPBC336.06c" ; Alias "rnh1" ; db_xref "SPD:32/32B12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR234W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0004523; ribonuclease H activity
GO:0006401; RNA catabolic process" ; primary_name "rnh1" ; product "ribonuclease H Rnh1 (predicted)" ; EC_number "3.1.26.4" ;
chromosome2 GeneDB CDS 2748791 2749517 . - . mRNA SPBC336.06c ; colour "7" ;
chromosome2 GeneDB CDS 2749702 2749769 . - . mRNA SPBC336.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 2749518 2749528 . - . misc_feature unknown_2170 ; colour "6" ; note "ctaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2749696 2749701 . - . misc_feature unknown_2171 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2749768 2750001 . - . mRNA SPBC336.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.06c" ; systematic_id "SPBC336.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2750903 2750914 . + . mRNA SPBC336.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.07" ; systematic_id "SPBC336.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2750915 2754934 . + . mRNA SPBC336.07 ; systematic_id "SPBC336.07" ; colour "2" ; gene "sfc3 ||| SPBC336.07" ; Alias "sfc3" ; db_xref "SPD:48/48F10" ; GO "GO:0000127; transcription factor TFIIIC complex
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003709; RNA polymerase III transcription factor activity
GO:0043035; chromatin insulator sequence binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; date=20070216 ||| term=orthologous to S. cerevisiae YAL001C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Eukaryotes only; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=species distribution, conserved in Vertebrates; date=20100824" ; primary_name "sfc3" ; product "transcription factor TFIIIC complex B box binding subunit Sfc3" ;
chromosome2 GeneDB CDS 2750915 2754934 . + . mRNA SPBC336.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2754935 2755005 . + . mRNA SPBC336.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.07" ; systematic_id "SPBC336.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2755442 2755504 . + . mRNA SPBC336.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.08" ; systematic_id "SPBC336.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2755505 2756278 . + . mRNA SPBC336.08 ; systematic_id "SPBC336.08" ; colour "2" ; gene "spc24 ||| SPBC336.08" ; Alias "spc24" ; db_xref "SPD:09/09F02" ; GO "GO:0031617; NMS complex
GO:0031262; Ndc80 complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR117C; date=19700101 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spc24" ; product "spindle pole body protein Spc24" ;
chromosome2 GeneDB CDS 2755505 2755658 . + . mRNA SPBC336.08 ; colour "2" ;
chromosome2 GeneDB CDS 2755706 2756041 . + . mRNA SPBC336.08 ; colour "2" ;
chromosome2 GeneDB CDS 2756172 2756278 . + . mRNA SPBC336.08 ; colour "2" ;
chromosome2 GeneDB misc_feature 2755659 2755664 . + . misc_feature unknown_2172 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2755692 2755705 . + . misc_feature unknown_2173 ; colour "6" ; note "ttaactgtgaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2756042 2756047 . + . misc_feature unknown_2174 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2756157 2756171 . + . misc_feature unknown_2175 ; colour "6" ; note "ctcacactttcctag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2756305 2757982 . - . mRNA SPBC336.09c ; systematic_id "SPBC336.09c" ; colour "2" ; gene "rrn7 ||| SPBC336.09c" ; Alias "rrn7" ; db_xref "SPD:35/35B03" ; GO "GO:0000120; RNA polymerase I transcription factor complex
GO:0003701; RNA polymerase I transcription factor activity
GO:0005515; protein binding
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL025W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rrn7" ; product "RNA polymerase I upstream activation factor complex subunit Rrn7" ;
chromosome2 GeneDB CDS 2756305 2757807 . - . mRNA SPBC336.09c ; colour "2" ;
chromosome2 GeneDB CDS 2757872 2757982 . - . mRNA SPBC336.09c ; colour "2" ;
chromosome2 GeneDB misc_feature 2757808 2757830 . - . misc_feature unknown_2176 ; colour "6" ; note "ttaataaaattgttaaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2757866 2757871 . - . misc_feature unknown_2177 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2757981 2758245 . - . mRNA SPBC336.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.09c" ; systematic_id "SPBC336.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2758645 2758760 . - . mRNA SPBC336.10c ; ID "SPBC336.10c" ; systematic_id "SPBC336.10c" ; note "mRNA from AU011603" ;
chromosome2 GeneDB CDS_parts 2758761 2759234 . - . mRNA SPBC336.10c ; systematic_id "SPBC336.10c" ; colour "7" ; gene "tif512 ||| SPBC336.10c" ; note "previously thought to function in initiation (predicted)" ; Alias "tif512" ; db_xref "SPD:31/31D10" ; GO "GO:0003746; translation elongation factor activity
GO:0045901; positive regulation of translational elongation
GO:0022626; cytosolic ribosome
GO:0043022; ribosome binding
GO:0045905; positive regulation of translational termination
GO:0003723; RNA binding
GO:0006452; translational frameshifting" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR047C and YEL034W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, hypusination; evidence=ISS; with=SGD:S000000760; cv=pt_mod; date=20090518" ; primary_name "tif512" ; product "translation elongation factor eIF5A (predicted)" ;
chromosome2 GeneDB CDS 2758761 2759234 . - . mRNA SPBC336.10c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2759233 2759237 . - . mRNA SPBC336.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.10c" ; systematic_id "SPBC336.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2759562 2759638 . + . mRNA SPBC336.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.11" ; systematic_id "SPBC336.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2759639 2761165 . + . mRNA SPBC336.11 ; systematic_id "SPBC336.11" ; colour "7" ; gene "SPBC336.11 ||| vps52" ; Alias "vps52" ; db_xref "SPD:44/44H03" ; GO "GO:0000938; GARP complex
GO:0016192; vesicle-mediated transport
GO:0006896; Golgi to vacuole transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0030029; actin filament-based process
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR484W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "vps52" ; product "GARP complex subunit Vps52 (predicted)" ;
chromosome2 GeneDB CDS 2759639 2761165 . + . mRNA SPBC336.11 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2761210 2761286 . - . mRNA SPBC336.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.12c" ; systematic_id "SPBC336.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2761287 2763590 . - . mRNA SPBC336.12c ; systematic_id "SPBC336.12c" ; colour "2" ; gene "cdc10 ||| SPBC336.12c" ; Alias "cdc10" ; db_xref "SPD:33/33G05" ; GO "GO:0030907; MBF transcription complex
GO:0005515; protein binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000083; G1/S-specific transcription in mitotic cell cycle
GO:0032569; gene-specific tanscription from RNA polymerase II promoter
GO:0007090; regulation of S phase of mitotic cell cycle
GO:0051037; regulation of transcription, meiotic
GO:0045896; regulation of transcription, mitotic" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:6943408; date=20100705 ||| term=ankyrin repeat protein; date=19700101 ||| term=APSES domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR182W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; date=20100122" ; primary_name "cdc10" ; product "MBF transcription factor complex subunit Cdc10" ;
chromosome2 GeneDB CDS 2761287 2763590 . - . mRNA SPBC336.12c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2763589 2763799 . - . mRNA SPBC336.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.12c" ; systematic_id "SPBC336.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2764131 2764314 . - . mRNA SPBC336.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.13c" ; systematic_id "SPBC336.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2764315 2764996 . - . mRNA SPBC336.13c ; db_xref "SPD:07/07H09" ; systematic_id "SPBC336.13c" ; colour "7" ; GO "GO:0042720; mitochondrial inner membrane peptidase complex
GO:0004222; metalloendopeptidase activity
GO:0008236; serine-type peptidase activity
GO:0006627; mitochondrial protein processing
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR035W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC336.13c" ; product "mitochondrial inner membrane peptidase complex catalytic subunit 2 (predicted)" ;
chromosome2 GeneDB CDS 2764315 2764465 . - . mRNA SPBC336.13c ; colour "7" ;
chromosome2 GeneDB CDS 2764533 2764682 . - . mRNA SPBC336.13c ; colour "7" ;
chromosome2 GeneDB CDS 2764755 2764996 . - . mRNA SPBC336.13c ; colour "7" ;
chromosome2 GeneDB misc_feature 2764466 2764480 . - . misc_feature unknown_2178 ; colour "6" ; note "ttaactagtttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2764527 2764532 . - . misc_feature unknown_2179 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2764683 2764697 . - . misc_feature unknown_2180 ; colour "6" ; note "ctaataagcaacaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2764749 2764754 . - . misc_feature unknown_2181 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2764995 2765173 . - . mRNA SPBC336.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.13c" ; systematic_id "SPBC336.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2765320 2767690 . - . mRNA SPBC336.14c ; systematic_id "SPBC336.14c" ; colour "2" ; gene "ppk26 ||| SPBC336.14c" ; note "Warning, this has a Pfam protein kinase dominan, but none of its orthologs do. It needs looking into further but it could be a false positive" ; Alias "ppk26" ; db_xref "SPD:38/38D01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YKL025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031251; PAN complex
GO:0005737; cytoplasm
GO:0031124; mRNA 3'-end processing
GO:0004674; protein serine/threonine kinase activity
GO:0006301; postreplication repair" ; primary_name "ppk26" ; product "serine/threonine protein kinase, PAN complex subunit, Ppk26" ;
chromosome2 GeneDB CDS 2765320 2765367 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB CDS 2765474 2765551 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB CDS 2765599 2766130 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB CDS 2766211 2766436 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB CDS 2766474 2766584 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB CDS 2766630 2766779 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB CDS 2766822 2766966 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB CDS 2767006 2767101 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB CDS 2767155 2767311 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB CDS 2767357 2767397 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB CDS 2767457 2767551 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB CDS 2767600 2767690 . - . mRNA SPBC336.14c ; colour "2" ;
chromosome2 GeneDB misc_feature 2765368 2765386 . - . misc_feature unknown_2182 ; colour "6" ; note "ctaacaataacaaatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2765468 2765473 . - . misc_feature unknown_2183 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2765552 2765563 . - . misc_feature unknown_2184 ; colour "6" ; note "ttaattcattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2765593 2765598 . - . misc_feature unknown_2185 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2766131 2766143 . - . misc_feature unknown_2186 ; colour "6" ; note "ctaacgtgtaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2766205 2766210 . - . misc_feature unknown_2187 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2766437 2766449 . - . misc_feature unknown_2188 ; colour "6" ; note "ctaattaatcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2766468 2766473 . - . misc_feature unknown_2189 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2766585 2766600 . - . misc_feature unknown_2190 ; colour "6" ; note "ctaatatatttaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2766624 2766629 . - . misc_feature unknown_2191 ; colour "6" ; note "gtaacc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2766780 2766791 . - . misc_feature unknown_2192 ; colour "6" ; note "ctaatattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2766816 2766821 . - . misc_feature unknown_2193 ; colour "6" ; note "gtactt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2766967 2766979 . - . misc_feature unknown_2194 ; colour "6" ; note "ttgacaacaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2767000 2767005 . - . misc_feature unknown_2195 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2767102 2767122 . - . misc_feature unknown_2196 ; colour "6" ; note "ctaattttactgtaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2767149 2767154 . - . misc_feature unknown_2197 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2767312 2767324 . - . misc_feature unknown_2198 ; colour "6" ; note "ttaacctcgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2767351 2767356 . - . misc_feature unknown_2199 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2767398 2767414 . - . misc_feature unknown_2200 ; colour "6" ; note "cttacgattgtttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2767451 2767456 . - . misc_feature unknown_2201 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2767552 2767571 . - . misc_feature unknown_2202 ; colour "6" ; note "ctgaccaccatttttaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2767594 2767599 . - . misc_feature unknown_2203 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2767689 2767706 . - . mRNA SPBC336.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.14c" ; systematic_id "SPBC336.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 2768257 2768335 . - . tRNA SPBTRNALEU.08 ; systematic_id "SPBTRNALEU.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033444; AAG codon-amino acid adaptor activity" ; gene "SPBTRNALEU.08" ; product "tRNA Leucine" ; note "tRNA Leu anticodon AAG, Cove score 60.58" ;
chromosome2 GeneDB 5'-UTR 2769249 2769270 . + . mRNA SPBC336.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.15" ; systematic_id "SPBC336.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2769271 2772370 . + . mRNA SPBC336.15 ; systematic_id "SPBC336.15" ; colour "2" ; gene "pic1 ||| SPBC336.15 ||| SPBC685.01" ; note "N term exon may be incorrect" ; Alias "pic1" ; db_xref "SPD:47/47G12" ; synonym "SPBC685.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR156C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000939; condensed nuclear chromosome kinetochore
GO:0033205; cell cycle cytokinesis
GO:0005515; protein binding
GO:0005634; nucleus
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0032133; chromosome passenger complex" ; primary_name "pic1" ; product "INCENP, Pic1" ;
chromosome2 GeneDB CDS 2769271 2769428 . + . mRNA SPBC336.15 ; colour "2" ;
chromosome2 GeneDB CDS 2769472 2772370 . + . mRNA SPBC336.15 ; colour "2" ;
chromosome2 GeneDB misc_feature 2769429 2769434 . + . misc_feature unknown_2204 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2769456 2769471 . + . misc_feature unknown_2205 ; colour "6" ; note "ctaattagatggttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2771924 2772042 . + . misc_feature unknown_2206 ; note "nominal overlap with cosmid SPBC685 and cosmid SPBC336" ;
chromosome2 GeneDB 3'-UTR 2772371 2772488 . + . mRNA SPBC336.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC336.15" ; systematic_id "SPBC336.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2772768 2772883 . + . mRNA SPBC685.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC685.02" ; systematic_id "SPBC685.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2772884 2774447 . + . mRNA SPBC685.02 ; systematic_id "SPBC685.02" ; colour "7" ; gene "SPBC685.02" ; db_xref "SPD:25/25C04" ; Alias "exo5" ; GO "GO:0005739; mitochondrion
GO:0045145; single stranded DNA specific 5'-3' exodeoxyribonuclease activity
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR163W; date=19700101 ||| term=human c1orf176 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "exo5" ; product "mitochondrial single stranded DNA specific 5'-3' exodeoxyribonuclease Exo5 (predicted)" ;
chromosome2 GeneDB CDS 2772884 2773046 . + . mRNA SPBC685.02 ; colour "7" ;
chromosome2 GeneDB CDS 2773102 2773166 . + . mRNA SPBC685.02 ; colour "7" ;
chromosome2 GeneDB CDS 2773317 2774093 . + . mRNA SPBC685.02 ; colour "7" ;
chromosome2 GeneDB CDS 2774223 2774447 . + . mRNA SPBC685.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 2773047 2773052 . + . misc_feature unknown_2207 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2773084 2773101 . + . misc_feature unknown_2208 ; colour "6" ; note "ctaataatcaacgttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2773167 2773172 . + . misc_feature unknown_2209 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2773297 2773316 . + . misc_feature unknown_2210 ; colour "6" ; note "ctgacagaacctattattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2774094 2774099 . + . misc_feature unknown_2211 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2774206 2774222 . + . misc_feature unknown_2212 ; colour "6" ; note "ctaacatcttttactag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2774697 2776055 . + . mRNA SPBC685.03 ; db_xref "SPD:21/21B02" ; systematic_id "SPBC685.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC685.03" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2774697 2776055 . + . mRNA SPBC685.03 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 2776056 2776063 . + . mRNA SPBC685.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC685.03" ; systematic_id "SPBC685.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2776282 2776484 . - . mRNA SPBC685.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC685.04c" ; systematic_id "SPBC685.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2776485 2776916 . - . mRNA SPBC685.04c ; systematic_id "SPBC685.04c" ; colour "7" ; gene "aps2 ||| SPBC685.04c" ; Alias "aps2" ; db_xref "SPD:03/03F01" ; GO "GO:0030122; AP-2 adaptor complex
GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR058C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "aps2" ; product "AP-2 adaptor complex subunit Aps2 (predicted)" ;
chromosome2 GeneDB CDS 2776485 2776916 . - . mRNA SPBC685.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2776915 2777112 . - . mRNA SPBC685.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC685.04c" ; systematic_id "SPBC685.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2777829 2777841 . + . mRNA SPBC685.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC685.05" ; systematic_id "SPBC685.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2777842 2778500 . + . mRNA SPBC685.05 ; systematic_id "SPBC685.05" ; colour "7" ; gene "gpi15 ||| SPBC685.05" ; Alias "gpi15" ; db_xref "SPD:42/42G06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL038W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0017176; phosphatidylinositol N- acetylglucosaminyltransferase activity
GO:0006506; GPI anchor biosynthesis
GO:0005789; endoplasmic reticulum membrane" ; primary_name "gpi15" ; product "pig-H (predicted)" ; EC_number "2.4.1.198" ;
chromosome2 GeneDB CDS 2777842 2778049 . + . mRNA SPBC685.05 ; colour "7" ;
chromosome2 GeneDB CDS 2778226 2778500 . + . mRNA SPBC685.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 2778050 2778055 . + . misc_feature unknown_2213 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2778207 2778225 . + . misc_feature unknown_2214 ; colour "6" ; note "ctaacttacattttactag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2778501 2778591 . + . mRNA SPBC685.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC685.05" ; systematic_id "SPBC685.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2778923 2779856 . + . mRNA SPBC685.06 ; systematic_id "SPBC685.06" ; colour "2" ; gene "rps001 ||| rps0-1 ||| rpsa-1 ||| rps0 ||| SPBC685.06" ; Alias "rps001" ; db_xref "SPD:13/13A11" ; synonym "rps0-1 ||| rpsa-1 ||| rps0" ; GO "GO:0042274; ribosomal small subunit biogenesis
GO:0006412; translation
GO:0015935; small ribosomal subunit
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR214W and YLR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps001" ; product "40S ribosomal protein S0A (p40)" ;
chromosome2 GeneDB CDS 2778923 2778961 . + . mRNA SPBC685.06 ; colour "2" ;
chromosome2 GeneDB CDS 2779017 2779856 . + . mRNA SPBC685.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 2778962 2778967 . + . misc_feature unknown_2215 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 2778962 2779016 . + . intron SPBC685.06 ; systematic_id "SPBC685.06" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 2779001 2779016 . + . misc_feature unknown_2216 ; colour "6" ; note "ctgacactgaatttag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2780199 2780653 . - . mRNA SPBC685.07c ; systematic_id "SPBC685.07c" ; colour "2" ; gene "rpl2701 ||| rpl27-1 ||| SPBC685.07c" ; Alias "rpl2701" ; db_xref "SPD:41/41C02" ; synonym "rpl27-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR010W and YDR471W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl2701" ; product "60S ribosomal protein L27" ;
chromosome2 GeneDB CDS 2780199 2780582 . - . mRNA SPBC685.07c ; colour "2" ;
chromosome2 GeneDB CDS 2780627 2780653 . - . mRNA SPBC685.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 2780583 2780599 . - . misc_feature unknown_2217 ; note "ctaacatttcaaaatag, splice branch and acceptor sequence" ;
chromosome2 GeneDB intron 2780583 2780626 . + . intron unknown_2218 ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2780621 2780626 . - . misc_feature unknown_2219 ; note "gtatga splice donor sequence" ;
chromosome2 GeneDB CDS_parts 2781316 2781655 . + . mRNA SPBC685.08 ; db_xref "SPD:02/02A06" ; systematic_id "SPBC685.08" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; colour "8" ; gene "SPBC685.08" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2781316 2781318 . + . mRNA SPBC685.08 ; colour "8" ;
chromosome2 GeneDB CDS 2781365 2781655 . + . mRNA SPBC685.08 ; colour "8" ;
chromosome2 GeneDB misc_feature 2781319 2781324 . + . misc_feature unknown_2220 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2781347 2781364 . + . misc_feature unknown_2221 ; colour "6" ; note "ttaactaggttcctcaag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2781958 2783565 . + . mRNA SPBC685.09 ; systematic_id "SPBC685.09" ; colour "2" ; gene "orc2 ||| orp2 ||| SPBC685.09" ; Alias "orc2" ; db_xref "SPD:33/33C05" ; synonym "orp2" ; GO "GO:0003688; DNA replication origin binding
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0005656; pre-replicative complex
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:8552194; date=20100708 ||| term=orthologous to S. cerevisiae YBR060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "orc2" ; product "origin recognition complex subunit Orc2" ;
chromosome2 GeneDB CDS 2781958 2783565 . + . mRNA SPBC685.09 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2783566 2783598 . + . mRNA SPBC685.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC685.09" ; systematic_id "SPBC685.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2783991 2784276 . - . mRNA SPBC32F12.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.01c" ; systematic_id "SPBC32F12.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2784277 2785551 . - . mRNA SPBC32F12.01c ; systematic_id "SPBC32F12.01c" ; colour "2" ; gene "SPBC685.10c ||| SPBC32F12.01c" ; Alias "css1" ; db_xref "SPD:20/20D07" ; synonym "SPBC685.10c" ; GO "GO:0004629; phospholipase C activity
GO:0030149; sphingolipid catabolism
GO:0005739; mitochondrion
GO:0005783; endoplasmic reticulum
GO:0046513; ceramide biosynthetic process
GO:0051278; fungal-type cell wall polysaccharide biosynthetic process
GO: SF NEW remove ISS; inositolphosphosphingolipid phopholipase C activity
GO:0005886; plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "css1" ; product "inositol phosphosphingolipid phospholipase C, Css1" ;
chromosome2 GeneDB CDS 2784277 2785551 . - . mRNA SPBC32F12.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 2785162 2785383 . + . misc_feature unknown_2222 ; note "nominal overlap with cosmid SPBC685 and cosmid SPBC32F12" ;
chromosome2 GeneDB 5'-UTR 2785550 2785638 . - . mRNA SPBC32F12.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.01c" ; systematic_id "SPBC32F12.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2786843 2786977 . + . mRNA SPBC32F12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.02" ; systematic_id "SPBC32F12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2786978 2787939 . + . mRNA SPBC32F12.02 ; systematic_id "SPBC32F12.02" ; colour "2" ; gene "rec14 ||| SPBC32F12.02" ; Alias "rec14" ; db_xref "SPD:32/32B07" ; GO "GO:0007131; meiotic recombination
GO:0055087; Ski complex
GO:0006402; mRNA catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL213C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rec14" ; product "Ski complex subunit Rec14" ;
chromosome2 GeneDB CDS 2786978 2787266 . + . mRNA SPBC32F12.02 ; colour "2" ;
chromosome2 GeneDB CDS 2787320 2787939 . + . mRNA SPBC32F12.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 2787267 2787272 . + . misc_feature unknown_2223 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2787302 2787319 . + . misc_feature unknown_2224 ; colour "6" ; note "ctaacgaatatgatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2787940 2788166 . + . mRNA SPBC32F12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.02" ; systematic_id "SPBC32F12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2788385 2788469 . + . mRNA SPBC32F12.16 ; db_xref "PMID:21270388" ; systematic_id "SPBC32F12.16" ;
chromosome2 GeneDB CDS_parts 2788470 2788745 . + . mRNA SPBC32F12.16 ; Alias "new17" ; systematic_id "SPBC32F12.16" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "new17" ; gene "SPBC32F12.16" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2788470 2788745 . + . mRNA SPBC32F12.16 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 2788746 2788884 . + . mRNA SPBC32F12.16 ; db_xref "PMID:21270388" ; systematic_id "SPBC32F12.16" ;
chromosome2 GeneDB 3'-UTR 2788883 2789070 . - . mRNA SPBC32F12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.03c" ; systematic_id "SPBC32F12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2789071 2789547 . - . mRNA SPBC32F12.03c ; systematic_id "SPBC32F12.03c" ; colour "2" ; gene "gpx1 ||| SPBC32F12.03c" ; Alias "gpx1" ; db_xref "SPD:31/31D11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=20070522 ||| term=orthologous to S. cerevisiae YKL026C and YBR244W and YIR037W; date=19700101 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:10455235; date=19700101 ||| term=gene expression, transcriptionally regulated by Pap1; cv=gene_ex; db_xref=PMID:10455235; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0004602; glutathione peroxidase activity
GO:0034599; cellular response to oxidative stress
GO:0006970; response to osmotic stress
GO:0034605; cellular response to heat
GO:0070301; cellular response to hydrogen peroxide
GO:0019430; removal of superoxide radicals" ; primary_name "gpx1" ; product "glutathione peroxidase Gpx1" ; EC_number "1.11.1.9" ;
chromosome2 GeneDB CDS 2789071 2789547 . - . mRNA SPBC32F12.03c ; colour "2" ;
chromosome2 GeneDB tRNA 2790375 2790446 . - . tRNA SPBTRNATHR.07 ; systematic_id "SPBTRNATHR.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033445; AGT codon-amino acid adaptor activity" ; gene "SPBTRNATHR.07" ; product "tRNA Threonine" ; note "tRNA Thr anticodon AGT, Cove score 62.36" ;
chromosome2 GeneDB 5'-UTR 2791360 2791469 . + . mRNA SPBC32F12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.04" ; systematic_id "SPBC32F12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2791470 2793142 . + . mRNA SPBC32F12.04 ; systematic_id "SPBC32F12.04" ; colour "2" ; db_xref "SPD:40/40F08" ; Alias "gtb1" ; synonym "tug1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YLR212C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000923; equatorial microtubule organizing center
GO:0000930; gamma-tubulin complex
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0010687; site selection involved in cell cycle cytokinesis
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0007020; microtubule nucleation
GO:0000070; mitotic chromosome segregation
GO:0007051; spindle organization and biogenesis
GO:0005515; protein binding" ; primary_name "gtb1" ; product "gamma-tubulin" ;
chromosome2 GeneDB CDS 2791470 2791518 . + . mRNA SPBC32F12.04 ; colour "2" ;
chromosome2 GeneDB CDS 2791581 2791693 . + . mRNA SPBC32F12.04 ; colour "2" ;
chromosome2 GeneDB CDS 2791743 2791796 . + . mRNA SPBC32F12.04 ; colour "2" ;
chromosome2 GeneDB CDS 2791866 2792342 . + . mRNA SPBC32F12.04 ; colour "2" ;
chromosome2 GeneDB CDS 2792387 2792851 . + . mRNA SPBC32F12.04 ; colour "2" ;
chromosome2 GeneDB CDS 2792902 2793017 . + . mRNA SPBC32F12.04 ; colour "2" ;
chromosome2 GeneDB CDS 2793076 2793142 . + . mRNA SPBC32F12.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 2791519 2791524 . + . misc_feature unknown_2225 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2791557 2791580 . + . misc_feature unknown_2226 ; colour "6" ; note "ctaattactcacaaacttgtctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2791694 2791699 . + . misc_feature unknown_2227 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2791729 2791742 . + . misc_feature unknown_2228 ; colour "6" ; note "ttaactcattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2791797 2791802 . + . misc_feature unknown_2229 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2791845 2791865 . + . misc_feature unknown_2230 ; colour "6" ; note "ctaatgtcctctttaccttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2792343 2792348 . + . misc_feature unknown_2231 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2792374 2792386 . + . misc_feature unknown_2232 ; colour "6" ; note "ctaactattctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2792852 2792857 . + . misc_feature unknown_2233 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2792889 2792901 . + . misc_feature unknown_2234 ; colour "6" ; note "ctaatctttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2793018 2793023 . + . misc_feature unknown_2235 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2793060 2793075 . + . misc_feature unknown_2236 ; colour "6" ; note "ctaatgtatttgacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2793143 2794106 . + . mRNA SPBC32F12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.04" ; systematic_id "SPBC32F12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2793222 2794027 . - . mRNA SPBC32F12.05c ; systematic_id "SPBC32F12.05c" ; colour "2" ; gene "cwf12 ||| SPBC32F12.05c" ; Alias "cwf12" ; obsolete_name "isy1" ; db_xref "SPD:10/10C04" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR050W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf12" ; product "complexed with Cdc5 protein Cwf12" ;
chromosome2 GeneDB CDS 2793222 2793727 . - . mRNA SPBC32F12.05c ; colour "2" ;
chromosome2 GeneDB CDS 2793819 2793951 . - . mRNA SPBC32F12.05c ; colour "2" ;
chromosome2 GeneDB CDS 2794013 2794027 . - . mRNA SPBC32F12.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 2793728 2793741 . - . misc_feature unknown_2237 ; colour "6" ; note "ctaaccatgaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2793813 2793818 . - . misc_feature unknown_2238 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2793952 2793969 . - . misc_feature unknown_2239 ; colour "6" ; note "ctaacccctttgttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2794007 2794012 . - . misc_feature unknown_2240 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2794026 2794275 . - . mRNA SPBC32F12.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.05c" ; systematic_id "SPBC32F12.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2794874 2794965 . + . mRNA SPBC32F12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.06" ; systematic_id "SPBC32F12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2794966 2796094 . + . mRNA SPBC32F12.06 ; systematic_id "SPBC32F12.06" ; colour "2" ; gene "pch1 ||| SPBC32F12.06" ; db_xref "SPD:40/40C12" ; Alias "pch1" ; GO "GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0005515; protein binding
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0070816; phosphorylation of RNA polymerase II C- terminal domain
GO:0006468; protein amino acid phosphorylation
GO:0010551; regulation of specific transcription from RNA polymaerase II promoter
GO:0008024; positive transcription elongation factor comblex b
GO:0006370; mRNA capping
GO:0034243; regulation of elongation from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YLR226W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pch1" ; product "P-TEFB associated cyclin, cyclin T Pch1" ;
chromosome2 GeneDB CDS 2794966 2795144 . + . mRNA SPBC32F12.06 ; colour "2" ;
chromosome2 GeneDB CDS 2795202 2795746 . + . mRNA SPBC32F12.06 ; colour "2" ;
chromosome2 GeneDB CDS 2795790 2796094 . + . mRNA SPBC32F12.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 2795145 2795150 . + . misc_feature unknown_2241 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB intron 2795145 2795202 . + . intron SPBC32F12.06 ; systematic_id "SPBC32F12.06" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 2795186 2795201 . + . misc_feature unknown_2242 ; colour "6" ; note "ctaacaataataacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2795703 2796315 . - . mRNA SPBC32F12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.07c" ; systematic_id "SPBC32F12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2795747 2795752 . + . misc_feature unknown_2243 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB intron 2795747 2795789 . + . intron SPBC32F12.06 ; systematic_id "SPBC32F12.06" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 2795778 2795789 . + . misc_feature unknown_2244 ; colour "6" ; note "ctaacaatgcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2796095 2796196 . + . mRNA SPBC32F12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.06" ; systematic_id "SPBC32F12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2796316 2797338 . - . mRNA SPBC32F12.07c ; db_xref "SPD:15/15D01" ; systematic_id "SPBC32F12.07c" ; colour "10" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060726 ||| term=orthologous to S. cerevisiae YMR187C; date=19700101 ||| term=human MARCH9 ortholog; date=20080718 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC32F12.07c" ; product "ubiquitin-protein ligase E3, MARCH family (predicted)" ;
chromosome2 GeneDB CDS 2796316 2797338 . - . mRNA SPBC32F12.07c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 2797337 2797676 . - . mRNA SPBC32F12.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.07c" ; systematic_id "SPBC32F12.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2798007 2798507 . - . mRNA SPBC32F12.08c ; systematic_id "SPBC32F12.08c" ; colour "2" ; gene "duo1 ||| SPBC32F12.08c" ; Alias "duo1" ; db_xref "SPD:04/04H07" ; GO "GO:0042729; DASH complex
GO:0007052; mitotic spindle organization and biogenesis
GO:0031134; sister chromatid biorientation
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16079915; date=19700101 ||| term=orthologous to S. cerevisiae YGL061C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "duo1" ; product "DASH complex subunit Duo1" ;
chromosome2 GeneDB CDS 2798007 2798507 . - . mRNA SPBC32F12.08c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2799716 2800588 . + . mRNA SPBC32F12.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.09" ; systematic_id "SPBC32F12.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2800589 2801281 . + . mRNA SPBC32F12.09 ; systematic_id "SPBC32F12.09" ; colour "2" ; gene "rum1 ||| SPBC32F12.09" ; Alias "rum1" ; db_xref "SPD:31/31G12" ; GO "GO:0004861; cyclin-dependent protein kinase inhibitor activity
GO:0060630; regulation of M/G1 transition of mitotic cell cycle
GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0000751; cell cycle arrest in response to pheromone
GO:0045736; negative regulation of cyclin- dependent protein kinase activity
GO:0030174; regulation of DNA replication initiation
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=complementation, functionally complemented by S. cerevisiae SIC1; db_xref=PMID:9472012; date=19700101 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=gene expression, expression cell cycle regulated; cv=gene_ex; date=19700101 ||| term=gene expression, regulated by mRNA stability; db_xref=PMID:9614176; cv=gene_ex; date=19700101 ||| term=gene expression, alternative transcripts; cv=gene_ex; date=20090826 ||| term=target of Sty1; qualifier=phosphorylated_form; db_xref=PMID:12135491; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:12135491; date=20090213 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=overexpression; date=20100730" ; primary_name "rum1" ; product "CDK inhibitor Rum1" ;
chromosome2 GeneDB CDS 2800589 2801281 . + . mRNA SPBC32F12.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 2800625 2800627 . + . misc_feature unknown_2245 ; note "phosphorylation site:PMID 12135491 ||| phosphorlation:MAPK:deactivates(possibly):PMID12135491" ;
chromosome2 GeneDB misc_feature 2800643 2800645 . + . misc_feature unknown_2246 ; note "phosphorylation site:PMID 12135491 ||| phosphorlation:MAPK:deactivates(possibly):PMID12135491" ;
chromosome2 GeneDB 3'-UTR 2801282 2801917 . + . mRNA SPBC32F12.09 ; ID "SPBC32F12.09" ; systematic_id "SPBC32F12.09" ; note "mRNA from SPRUM1" ;
chromosome2 GeneDB 5'-UTR 2802356 2802516 . + . mRNA SPBC32F12.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.10" ; systematic_id "SPBC32F12.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2802517 2804181 . + . mRNA SPBC32F12.10 ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00030; ||| KEGG:MAP00052; ||| KEGG:MAP00500; ||| KEGG:MAP00521; ||| KEGG:MAP00522; ||| KEGG:MAP00530; ||| SPD:34/34H06" ; systematic_id "SPBC32F12.10" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL127W and YMR105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0019255; glucose 1-phosphate metabolic process
GO:0051156; glucose 6-phosphate utilization
GO:0004614; phosphoglucomutase activity
GO:0005829; cytosol
GO:0019388; galactose catabolic process
GO:0005978; glycogen biosynthetic process
GO:0005992; trehalose biosynthetic process
GO:0006011; UDP-glucose metabolic process" ; gene "SPBC32F12.10" ; product "phosphoglucomutase (predicted)" ; EC_number "5.4.2.2" ;
chromosome2 GeneDB CDS 2802517 2804181 . + . mRNA SPBC32F12.10 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2804182 2804284 . + . mRNA SPBC32F12.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.10" ; systematic_id "SPBC32F12.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2804182 2807614 . + . misc_feature unknown_2247 ; note "low complexity gene free region" ;
chromosome2 GeneDB misc_RNA 2804337 2804580 . - . misc_RNA SPNCRNA.39 ; Alias "prl39" ; db_xref "EMBL:AB084851 ||| PMID:12597277" ; systematic_id "SPNCRNA.39" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl39" ; gene "prl39 ||| SPNCRNA.39" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB misc_feature 2805540 2806899 . + . misc_feature unknown_2248 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1713" ;
chromosome2 GeneDB 5'-UTR 2807615 2807636 . + . mRNA SPBC32F12.11 ; Alias "tdh1" ; ID "SPBC32F12.11" ; db_xref "EMBL:X85332" ; systematic_id "SPBC32F12.11" ; primary_name "tdh1" ;
chromosome2 GeneDB CDS_parts 2807637 2808647 . + . mRNA SPBC32F12.11 ; systematic_id "SPBC32F12.11" ; colour "2" ; db_xref "SPD:40/40C04" ; Alias "tdh1" ; synonym "gpd1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth defect, slow growth; cv=phenotype; db_xref=PMID:18406331; date=20090205 ||| term=orthologous to S. cerevisiae YJL052W and YGR192C and YJR009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, S-thiolated; cv=pt_mod; residue=Cyc_152; db_xref=PMID:18406331; date=20090205 ||| term=warning, gene name conflict; date=20091006" ; GO "GO:0006096; glycolysis
GO:0006094; gluconeogenesis
GO:0009277; cell wall (sensu Fungi)
GO:0005829; cytosol
GO:0004365; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0070301; cellular response to hydrogen peroxide
GO:0031098; stress-activated protein kinase signaling pathway
GO:0070302; regulation of stress-activated protein kinase signaling pathway
GO:0070297; regulation of two-component signal transduction
GO:0005515; protein binding" ; primary_name "tdh1" ; product "glyceraldehyde-3-phosphate dehydrogenase Tdh1" ; EC_number "1.2.1.12" ;
chromosome2 GeneDB CDS 2807637 2808647 . + . mRNA SPBC32F12.11 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2808648 2808999 . + . mRNA SPBC32F12.11 ; Alias "tdh1" ; ID "SPBC32F12.11" ; db_xref "EMBL:X85332" ; systematic_id "SPBC32F12.11" ; primary_name "tdh1" ;
chromosome2 GeneDB misc_feature 2809867 2810429 . + . misc_feature unknown_2249 ; note "was annotated as misc_RNA originally, before we identified SPBC32F12.15 from the Blandin paper" ;
chromosome2 GeneDB CDS_parts 2809874 2810080 . + . mRNA SPBC32F12.15 ; systematic_id "SPBC32F12.15" ; colour "7" ; gene "SPBC32F12.15 ||| tfb5" ; db_xref "SPD:51/51F06" ; Alias "tfb5" ; controlled_curation "term=orthologous to S. cerevisiae YDR079C-A; date=19700101 ||| term=disease associated, tricothiodystrophy disorder; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006289; nucleotide-excision repair
GO:0005634; nucleus
GO:0005675; transcription factor TFIIH complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0003743; translation initiation factor activity" ; primary_name "tfb5" ; product "transcription factor TFIIH complex subunit Tfb5 (predicted)" ;
chromosome2 GeneDB CDS 2809874 2810080 . + . mRNA SPBC32F12.15 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2810081 2810444 . + . mRNA SPBC32F12.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.15" ; systematic_id "SPBC32F12.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2810500 2810748 . - . mRNA SPBC32F12.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.12c" ; systematic_id "SPBC32F12.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2810749 2811727 . - . mRNA SPBC32F12.12c ; db_xref "SPD:14/14A11" ; systematic_id "SPBC32F12.12c" ; colour "7" ; GO "GO:0016192; vesicle-mediated transport
GO:0030173; integral to Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR071C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC32F12.12c" ; product "Golgi membrane protein involved in vesicle- medated transport (predicted)" ;
chromosome2 GeneDB CDS 2810749 2810949 . - . mRNA SPBC32F12.12c ; colour "7" ;
chromosome2 GeneDB CDS 2811072 2811256 . - . mRNA SPBC32F12.12c ; colour "7" ;
chromosome2 GeneDB CDS 2811569 2811606 . - . mRNA SPBC32F12.12c ; colour "7" ;
chromosome2 GeneDB CDS 2811657 2811727 . - . mRNA SPBC32F12.12c ; colour "7" ;
chromosome2 GeneDB misc_feature 2810950 2810962 . - . misc_feature unknown_2250 ; colour "6" ; note "ttaactcttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2811066 2811071 . - . misc_feature unknown_2251 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2811257 2811274 . - . misc_feature unknown_2252 ; colour "6" ; note "ctaacctactaccttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2811563 2811568 . - . misc_feature unknown_2253 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2811607 2811620 . - . misc_feature unknown_2254 ; colour "6" ; note "ctaacttattgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2811651 2811656 . - . misc_feature unknown_2255 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2811726 2811755 . - . mRNA SPBC32F12.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32F12.12c" ; systematic_id "SPBC32F12.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2812148 2812515 . - . mRNA SPBC19C7.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.01" ; systematic_id "SPBC19C7.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2812516 2813154 . - . mRNA SPBC19C7.01 ; systematic_id "SPBC19C7.01" ; colour "7" ; gene "SPBC32F12.13c ||| SPBC19C7.01" ; note "N-terminal splicing uncertain; 1st exon possibly at 441..466" ; Alias "SPBC32F12.13c" ; db_xref "SPD:07/07D01" ; synonym "SPBC32F12.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human WIBG ortholog; date=20080728 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "SPBC32F12.13c" ; product "Mago binding protein homolog (predicted)" ;
chromosome2 GeneDB CDS 2812516 2813080 . - . mRNA SPBC19C7.01 ; colour "7" ;
chromosome2 GeneDB CDS 2813129 2813154 . - . mRNA SPBC19C7.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 2812797 2814161 . + . misc_feature unknown_2256 ; note "nominal overlap with cosmid SPBC19C7 and cosmid SPBC32F12" ;
chromosome2 GeneDB misc_feature 2813081 2813097 . - . misc_feature unknown_2257 ; colour "6" ; note "ctaaagtttttatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2813123 2813128 . - . misc_feature unknown_2258 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2813153 2813190 . - . mRNA SPBC19C7.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.01" ; systematic_id "SPBC19C7.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2813185 2813348 . + . mRNA SPBC19C7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.02" ; systematic_id "SPBC19C7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2813349 2819225 . + . mRNA SPBC19C7.02 ; systematic_id "SPBC19C7.02" ; colour "2" ; gene "ubr1 ||| SPBC32F12.14 ||| SPBC19C7.02" ; Alias "ubr1" ; db_xref "SPD:34/34B12" ; synonym "SPBC32F12.14" ; GO "GO:0005634; nucleus
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0031144; proteasome localization
GO:0016567; protein ubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=zf-UBR1 type; date=20060726 ||| term=orthologous to S. cerevisiae YGR184C and YLR024C; date=19700101 ||| term=target is Cut8; db_xref=PMID:16096059; date=19700101 ||| term=target is Mei2; db_xref=PMID:11702950; date=20071120 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706" ; primary_name "ubr1" ; product "N-end-recognizing protein Ubr1" ;
chromosome2 GeneDB CDS 2813349 2819225 . + . mRNA SPBC19C7.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2819226 2819294 . + . mRNA SPBC19C7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.02" ; systematic_id "SPBC19C7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2819557 2819634 . + . misc_RNA SPNCRNA.408 ; db_xref "PMID:18488015" ; synonym "SPNG1715" ; systematic_id "SPNCRNA.408" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 2819850 2820007 . + . mRNA SPBC19C7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.03" ; systematic_id "SPBC19C7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2820008 2825086 . + . mRNA SPBC19C7.03 ; systematic_id "SPBC19C7.03" ; colour "2" ; gene "cyr1 ||| git2 ||| SPBC19C7.03" ; Alias "cyr1" ; db_xref "SPD:41/41A12" ; synonym "git2" ; GO "; plasma membrane
GO:0045014; negative regulation of transcription by glucose
GO:0019933; cAMP-mediated signaling
GO:0007188; G-protein signaling, coupled to cAMP nucleotide second messenger
GO:0004016; adenylate cyclase activity
GO:0006171; cAMP biosynthesis
GO:0005515; protein binding
GO:0031137; regulation of conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:2172964; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:1550959; date=20100712 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505 ||| term=orthologous to S. cerevisiae YJL005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=leucine-rich repeat protein; date=20100727" ; primary_name "cyr1" ; product "adenylate cyclase" ; EC_number "4.6.1.1" ;
chromosome2 GeneDB CDS 2820008 2825086 . + . mRNA SPBC19C7.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2825087 2825130 . + . mRNA SPBC19C7.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.03" ; systematic_id "SPBC19C7.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2825395 2825691 . - . mRNA SPBC19C7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.04c" ; systematic_id "SPBC19C7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2825692 2826066 . - . mRNA SPBC19C7.04c ; db_xref "SPD:02/02F11" ; systematic_id "SPBC19C7.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR273C and YMR295C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC19C7.04c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 2825692 2826066 . - . mRNA SPBC19C7.04c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 2826065 2826661 . - . mRNA SPBC19C7.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.04c" ; systematic_id "SPBC19C7.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2826067 2830188 . + . misc_feature unknown_2259 ; note "gene-free region; no gene predictions putative in this region, possibility of small or spliced orfs?" ;
chromosome2 GeneDB misc_RNA 2827281 2827631 . + . misc_RNA SPNCRNA.26 ; Alias "prl26" ; db_xref "PMID:12597277 ||| EMBL:AB084838" ; systematic_id "SPNCRNA.26" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl26" ; gene "prl26 ||| SPNCRNA.26" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB misc_feature 2827790 2828673 . + . misc_feature unknown_2260 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1716" ;
chromosome2 GeneDB 5'-UTR 2829800 2830188 . + . mRNA SPBC19C7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.05" ; systematic_id "SPBC19C7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2830189 2830641 . + . mRNA SPBC19C7.05 ; db_xref "SPD:04/04A05" ; systematic_id "SPBC19C7.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR003W and YBR005W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20090206 ||| term=species distribution, conserved in Vertebrates; date=20090206" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0031505; cell wall organization and biogenesis
GO:0016192; vesicle-mediated transport" ; gene "SPBC19C7.05" ; product "cell wall organization protein (predicted)" ;
chromosome2 GeneDB CDS 2830189 2830641 . + . mRNA SPBC19C7.05 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2830642 2831287 . + . mRNA SPBC19C7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.05" ; systematic_id "SPBC19C7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2831780 2831822 . + . mRNA SPBC19C7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.06" ; systematic_id "SPBC19C7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2831823 2833973 . + . mRNA SPBC19C7.06 ; systematic_id "SPBC19C7.06" ; colour "7" ; gene "SPBC19C7.06 ||| prs1" ; Alias "prs1" ; db_xref "KEGG:MAP00330; ||| KEGG:MAP00970; ||| SPD:37/37F01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR020W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006433; prolyl-tRNA aminoacylation
GO:0004827; proline-tRNA ligase activity" ; primary_name "prs1" ; product "cytoplasmic proline-tRNA ligase Prs1 (predicted)" ; EC_number "6.1.1.15" ;
chromosome2 GeneDB CDS 2831823 2833973 . + . mRNA SPBC19C7.06 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2833974 2834033 . + . mRNA SPBC19C7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.06" ; systematic_id "SPBC19C7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2834086 2834177 . - . mRNA SPBC19C7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.07c" ; systematic_id "SPBC19C7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2834178 2835032 . - . mRNA SPBC19C7.07c ; systematic_id "SPBC19C7.07c" ; colour "7" ; gene "SPBC19C7.07c ||| sen34" ; Alias "sen34" ; db_xref "SPD:11/11C07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAR008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000214; tRNA-intron endonuclease complex
GO:0000213; tRNA-intron endonuclease activity
GO:0005741; mitochondrial outer membrane
GO:0000379; tRNA-type intron splice site recognition and cleavage" ; primary_name "sen34" ; product "tRNA-splicing endonuclease catalytic subunit Sen34 (predicted)" ; EC_number "3.1.27.9" ;
chromosome2 GeneDB CDS 2834178 2835032 . - . mRNA SPBC19C7.07c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2835031 2835185 . - . mRNA SPBC19C7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.07c" ; systematic_id "SPBC19C7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2835338 2837383 . - . mRNA SPBC19C7.08c ; db_xref "SPD:46/46D07" ; systematic_id "SPBC19C7.08c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0008175; tRNA methyltransferase activity
GO:0030488; tRNA methylation
GO:0031591; wybutosine biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kelch repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YOL141W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC19C7.08c" ; product "AdoMet-dependent tRNA methyltransferase (predicted)" ;
chromosome2 GeneDB CDS 2835338 2837383 . - . mRNA SPBC19C7.08c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2837382 2837449 . - . mRNA SPBC19C7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.08c" ; systematic_id "SPBC19C7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2837662 2837785 . - . mRNA SPBC19C7.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.09c" ; systematic_id "SPBC19C7.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2837786 2839585 . - . mRNA SPBC19C7.09c ; systematic_id "SPBC19C7.09c" ; colour "2" ; gene "uve1 ||| uvde ||| SPBC19C7.09c" ; Alias "uve1" ; db_xref "SPD:33/33D09" ; synonym "uvde" ; GO "GO:0006298; mismatch repair
GO:0005634; nucleus
GO:0005739; mitochondrion
GO:0004519; endonuclease activity
GO:0043504; mitochondrial DNA repair
GO:0070914; UV-damaged DNA endonuclease-dependent excision repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=target of Rad12; db_xref=PMID:9023111; date=20090910 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "uve1" ; product "endonuclease Uve1" ; EC_number "3.-.-.-" ;
chromosome2 GeneDB CDS 2837786 2839585 . - . mRNA SPBC19C7.09c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2839584 2839915 . - . mRNA SPBC19C7.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.09c" ; systematic_id "SPBC19C7.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2840850 2840856 . + . mRNA SPBC19C7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.10" ; systematic_id "SPBC19C7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2840857 2842411 . + . mRNA SPBC19C7.10 ; systematic_id "SPBC19C7.10" ; colour "2" ; gene "SPBC19C7.10" ; db_xref "SPD:45/45A08" ; Alias "bqt4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=APSES domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; qualifier=C_term; db_xref=PMID:19948484; date=20091127" ; GO "GO:0005635; nuclear envelope
GO:0005637; nuclear inner membrane
GO:0005515; protein binding
GO:0005515; protein binding
GO:0045141; meiotic telomere clustering" ; primary_name "bqt4" ; product "bouquet formation protein Bqt4" ;
chromosome2 GeneDB CDS 2840857 2840897 . + . mRNA SPBC19C7.10 ; colour "2" ;
chromosome2 GeneDB CDS 2840935 2840966 . + . mRNA SPBC19C7.10 ; colour "2" ;
chromosome2 GeneDB CDS 2841006 2841105 . + . mRNA SPBC19C7.10 ; colour "2" ;
chromosome2 GeneDB CDS 2841168 2841221 . + . mRNA SPBC19C7.10 ; colour "2" ;
chromosome2 GeneDB CDS 2841268 2842314 . + . mRNA SPBC19C7.10 ; colour "2" ;
chromosome2 GeneDB CDS 2842387 2842411 . + . mRNA SPBC19C7.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 2840898 2840903 . + . misc_feature unknown_2261 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2840921 2840934 . + . misc_feature unknown_2262 ; colour "6" ; note "ctaattgatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2841106 2841111 . + . misc_feature unknown_2263 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2841146 2841167 . + . misc_feature unknown_2264 ; colour "6" ; note "ctaatgatgtatataaatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2841222 2841227 . + . misc_feature unknown_2265 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2841254 2841267 . + . misc_feature unknown_2266 ; colour "6" ; note "ctaaacccgattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2842315 2842320 . + . misc_feature unknown_2267 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2842370 2842386 . + . misc_feature unknown_2268 ; colour "6" ; note "ctaactatctttcgcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2842412 2842722 . + . mRNA SPBC19C7.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.10" ; systematic_id "SPBC19C7.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2843002 2843140 . + . mRNA SPBC19C7.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.11" ; systematic_id "SPBC19C7.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2843141 2845579 . + . mRNA SPBC19C7.11 ; db_xref "SPD:46/46H06" ; systematic_id "SPBC19C7.11" ; colour "7" ; GO "GO:0005247; voltage-gated chloride channel activity
GO:0030003; cation homeostasis
GO:0005794; Golgi apparatus
GO:0005768; endosome
GO:0006821; chloride transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hypercalciuric nephrolithiasis; date=20060920 ||| term=orthologous to S. cerevisiae YJR040W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC19C7.11" ; product "ClC chloride channel (predicted)" ;
chromosome2 GeneDB CDS 2843141 2845579 . + . mRNA SPBC19C7.11 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2845643 2845922 . - . mRNA SPBC19C7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.12c" ; systematic_id "SPBC19C7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2845923 2847095 . - . mRNA SPBC19C7.12c ; systematic_id "SPBC19C7.12c" ; colour "2" ; gene "SPBC19C7.12c ||| omh1" ; Alias "omh1" ; db_xref "SPD:18/18F01" ; GO "GO:0000026; alpha-1,2-mannosyltransferase activity
GO:0000032; cell wall mannoprotein biosynthesis
GO:0035269; protein amino acid O-linked mannosylation
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100525 ||| term=phenotype, cell morphology, pear shaped; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100625 ||| term=orthologous to S. cerevisiae YOR099W and YKR061W and YJL139C and YDR483W and YBR205W and YBR199W and YPL053C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "omh1" ; product "alpha-1,2-mannosyltransferase Omh1" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB CDS 2845923 2847095 . - . mRNA SPBC19C7.12c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2847094 2847515 . - . mRNA SPBC19C7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19C7.12c" ; systematic_id "SPBC19C7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 2847331 2847600 . + . misc_feature unknown_2269 ; note "nominal overlap with, cosmid" ;
chromosome2 GeneDB 5'-UTR 2848502 2848522 . + . mRNA SPBP19A11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP19A11.01" ; systematic_id "SPBP19A11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2848523 2849032 . + . mRNA SPBP19A11.01 ; systematic_id "SPBP19A11.01" ; colour "7" ; gene "SPBP19A11.01" ; Alias "gcv3" ; db_xref "KEGG:MAP00260; ||| SPD:41/41C12" ; GO "GO:0005960; glycine cleavage complex
GO:0005739; mitochondrion
GO:0004047; aminomethyltransferase activity
GO:0004375; glycine dehydrogenase (decarboxylating) activity
GO:0008483; transaminase activity
GO:0006546; glycine catabolism
GO:0019464; glycine decarboxylation via glycine cleavage system
GO:0009249; protein lipoylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, lipoylated; qualifier=predicted; cv=pt_mod; date=20100304" ; primary_name "gcv3" ; product "glycine decarboxylase complex subunit H (predicted)" ;
chromosome2 GeneDB CDS 2848523 2849032 . + . mRNA SPBP19A11.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2849033 2849432 . + . mRNA SPBP19A11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP19A11.01" ; systematic_id "SPBP19A11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2849544 2849579 . - . mRNA SPBP19A11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP19A11.02c" ; systematic_id "SPBP19A11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2849580 2850314 . - . mRNA SPBP19A11.02c ; db_xref "SPD:50/50A11" ; systematic_id "SPBP19A11.02c" ; colour "8" ; GO "GO:0009897; external side of plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; gene "SPBP19A11.02c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2849580 2850314 . - . mRNA SPBP19A11.02c ; colour "8" ;
chromosome2 GeneDB 5'-UTR 2850313 2850810 . - . mRNA SPBP19A11.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP19A11.02c" ; systematic_id "SPBP19A11.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2851245 2851329 . - . mRNA SPBP19A11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP19A11.03c" ; systematic_id "SPBP19A11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2851330 2854052 . - . mRNA SPBP19A11.03c ; systematic_id "SPBP19A11.03c" ; colour "2" ; gene "mts4 ||| rpn1 ||| SPBP19A11.03c" ; Alias "mts4" ; db_xref "SPD:49/49F03" ; synonym "rpn1" ; GO "GO:0005634; nucleus
GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0005515; protein binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9325304; date=19700101 ||| term=orthologous to S. cerevisiae YHR027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mts4" ; product "19S proteasome regulatory subunit Mts4" ;
chromosome2 GeneDB CDS 2851330 2853867 . - . mRNA SPBP19A11.03c ; colour "2" ;
chromosome2 GeneDB CDS 2853915 2854052 . - . mRNA SPBP19A11.03c ; colour "2" ;
chromosome2 GeneDB misc_feature 2853868 2853879 . - . misc_feature unknown_2270 ; colour "6" ; note "ctaaccaaatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 2853868 2853914 . - . intron SPBP19A11.03c ; systematic_id "SPBP19A11.03c" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 2853909 2853914 . - . misc_feature unknown_2271 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2854051 2854114 . - . mRNA SPBP19A11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP19A11.03c" ; systematic_id "SPBP19A11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2854491 2854649 . - . mRNA SPBP19A11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP19A11.04c" ; systematic_id "SPBP19A11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2854650 2861240 . - . mRNA SPBP19A11.04c ; systematic_id "SPBP19A11.04c" ; colour "2" ; gene "mor2 ||| cps12 ||| SPBP19A11.04c" ; Alias "mor2" ; db_xref "SPD:49/49H10" ; synonym "cps12" ; GO "GO:0032153; cell division site
GO:0005737; cytoplasm
GO:0030427; site of polarized growth
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030037; actin filament reorganization during cell cycle
GO:0000078; cell morphogenesis checkpoint
GO:0000920; cell separation during cytokinesis
GO: SF 3077846; regulation of establishment or maintenance of cell polarity resulting in cell shape
GO: SF 3077846; regulation of establishment or maintenance of cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell cycle, G2 delay; annotation_extension=dependent_on:wee1; db_xref=PMID:12234926; cv=phenotype; date=20060106 ||| term=HEAT repeat;evidence=ISS; date=19700101 ||| term=orthologous to S. cerevisiae YIL129C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mor2" ; product "morphogenesis protein Mor2" ;
chromosome2 GeneDB CDS 2854650 2861240 . - . mRNA SPBP19A11.04c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2861239 2861429 . - . mRNA SPBP19A11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP19A11.04c" ; systematic_id "SPBP19A11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2862086 2862162 . - . mRNA SPAP19A11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP19A11.05c" ; systematic_id "SPAP19A11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2862163 2862624 . - . mRNA SPAP19A11.05c ; systematic_id "SPAP19A11.05c" ; colour "7" ; gene "mrp7 ||| SPAP19A11.05c ||| SPBP19A11.05c" ; Alias "mrp7" ; db_xref "SPD:41/41C04" ; synonym "SPBP19A11.05c" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit
GO:0000048; peptidyltransferase activity
GO:0000048; peptidyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, systematic ID does not reflect chromosome; cv=warning; date=20100127" ; primary_name "mrp7" ; product "mitochondrial ribosomal protein subunit L27 (predicted)" ;
chromosome2 GeneDB CDS 2862163 2862624 . - . mRNA SPAP19A11.05c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2862623 2862748 . - . mRNA SPAP19A11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPAP19A11.05c" ; systematic_id "SPAP19A11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2863815 2868356 . + . mRNA SPBP19A11.06 ; systematic_id "SPBP19A11.06" ; colour "2" ; gene "lid2 ||| SPBP19A11.06 ||| SPBP4H10.01" ; Alias "lid2" ; db_xref "SPD:49/49H05" ; synonym "SPBP4H10.01" ; GO "GO:0048189; Lid2 complex
GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0032452; histone demethylase activity
GO:0006338; chromatin remodeling
GO:0016577; histone demethylation
GO:0006355; regulation of transcription, DNA- dependent
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, branched; db_xref=PMID:18957202; date=20100727 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:18957202; date=20100727 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=zf-C5HC2 type; date=19700101 ||| term=jmjC domain; date=19700101 ||| term=ARID domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=jmjN domain; date=20080901 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human KMD5A ortholog; date=20100217" ; primary_name "lid2" ; product "Lid2 complex subunit, predicted histone demethylase Lid2" ;
chromosome2 GeneDB CDS 2863815 2868356 . + . mRNA SPBP19A11.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 2866952 2868928 . + . misc_feature unknown_2272 ; note "nominal overlap with plasmid SPBP4H10" ;
chromosome2 GeneDB 3'-UTR 2868357 2868360 . + . mRNA SPBP19A11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP19A11.06" ; systematic_id "SPBP19A11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2868453 2870871 . - . mRNA SPBP19A11.07c ; db_xref "SPD:28/28F11" ; obsolete_name "SPBC1346.03" ; systematic_id "SPBP19A11.07c" ; synonym "SPBP4H10.02c" ; colour "10" ; controlled_curation "term=human c17orf28 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20091019 ||| term=orthologous to S. cerevisiae YLR436C; date=19700101" ; product "human c17orf28 ortholog 2" ;
chromosome2 GeneDB CDS 2868453 2868779 . - . mRNA SPBP19A11.07c ; colour "10" ;
chromosome2 GeneDB CDS 2868820 2868986 . - . mRNA SPBP19A11.07c ; colour "10" ;
chromosome2 GeneDB CDS 2869031 2869250 . - . mRNA SPBP19A11.07c ; colour "10" ;
chromosome2 GeneDB CDS 2869322 2869888 . - . mRNA SPBP19A11.07c ; colour "10" ;
chromosome2 GeneDB CDS 2869941 2870029 . - . mRNA SPBP19A11.07c ; colour "10" ;
chromosome2 GeneDB CDS 2870072 2870193 . - . mRNA SPBP19A11.07c ; colour "10" ;
chromosome2 GeneDB CDS 2870244 2870695 . - . mRNA SPBP19A11.07c ; colour "10" ;
chromosome2 GeneDB CDS 2870733 2870799 . - . mRNA SPBP19A11.07c ; colour "10" ;
chromosome2 GeneDB CDS 2870852 2870871 . - . mRNA SPBP19A11.07c ; colour "10" ;
chromosome2 GeneDB misc_feature 2868780 2868791 . - . misc_feature unknown_2273 ; colour "6" ; note "ctaattaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2868814 2868819 . - . misc_feature unknown_2274 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2868987 2868998 . - . misc_feature unknown_2275 ; colour "6" ; note "ttgactttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2869025 2869030 . - . misc_feature unknown_2276 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2869251 2869260 . - . misc_feature unknown_2277 ; colour "6" ; note "cttacaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2869316 2869321 . - . misc_feature unknown_2278 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2869889 2869910 . - . misc_feature unknown_2279 ; colour "6" ; note "ctaattctcaacttttctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2869935 2869940 . - . misc_feature unknown_2280 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2870030 2870040 . - . misc_feature unknown_2281 ; colour "6" ; note "ctaatccttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2870066 2870071 . - . misc_feature unknown_2282 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2870194 2870210 . - . misc_feature unknown_2283 ; colour "6" ; note "ctaacttctttcttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2870238 2870243 . - . misc_feature unknown_2284 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2870696 2870707 . - . misc_feature unknown_2285 ; colour "6" ; note "ttaacatagcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2870727 2870732 . - . misc_feature unknown_2286 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2870800 2870819 . - . misc_feature unknown_2287 ; colour "6" ; note "ctaatgccttttgtttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2870846 2870851 . - . misc_feature unknown_2288 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2870870 2871051 . - . mRNA SPBP19A11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP19A11.07c" ; systematic_id "SPBP19A11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2871762 2871897 . + . mRNA SPBP4H10.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.03" ; systematic_id "SPBP4H10.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2871898 2873127 . + . mRNA SPBP4H10.03 ; systematic_id "SPBP4H10.03" ; colour "2" ; gene "oxa102 ||| oxa1 ||| oxa1-2 ||| oxa1sp2 ||| SPBP4H10.03" ; Alias "oxa102" ; obsolete_name "SPBC1346.02c" ; db_xref "SPD:32/32F10" ; synonym "oxa1 ||| oxa1-2 ||| oxa1sp2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10712694; date=19700101 ||| term=orthologous to S. cerevisiae YER154W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0008565; protein transporter activity
GO:0008535; cytochrome c oxidase complex assembly
GO:0006461; protein complex assembly
GO:0045039; protein import into mitochondrial inner membrane" ; primary_name "oxa102" ; product "mitochondrial inner membrane translocase Oxa102" ;
chromosome2 GeneDB CDS 2871898 2873127 . + . mRNA SPBP4H10.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2873128 2873309 . + . mRNA SPBP4H10.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.03" ; systematic_id "SPBP4H10.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2873970 2873996 . + . mRNA SPBP4H10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.04" ; systematic_id "SPBP4H10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2873997 2875859 . + . mRNA SPBP4H10.04 ; systematic_id "SPBP4H10.04" ; colour "2" ; gene "ppb1 ||| SPBP4H10.04" ; Alias "ppb1" ; obsolete_name "SPBC1346.01c" ; db_xref "SPD:33/33E08" ; GO "GO:0005955; calcineurin complex
GO:0004721; calcium-dependent protein serine/threonine phosphatase activity
GO:0019722; calcium-mediated signaling
GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0030644; chloride ion homeostasis
GO:0031137; regulation of conjugation with cellular fusion
GO:0071775; regulation of cell cycle cytokinesis
GO:0071775; regulation of cell cycle cytokinesis
GO:0032878; regulation of establishment and/or maintenance of cell polarity
GO:0006470; protein amino acid dephosphorylation
GO:0070631; spindle pole body localization" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=20060913 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=20060913 ||| term=PPP3/PP2B/calcineurin subfamily; cv=protein_family; date=20060913 ||| term=orthologous to S. cerevisiae YML057W and YLR433C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Prz1; date=20090817 ||| term=phenotype, cell morphology, branched; db_xref=PMID:7983142; date=20100918" ; primary_name "ppb1" ; product "calcium-dependent serine/threonine protein phosphatase calcineurin, catalytic subunit Ppb1" ; EC_number "3.1.3.16" ;
chromosome2 GeneDB CDS 2873997 2874135 . + . mRNA SPBP4H10.04 ; colour "2" ;
chromosome2 GeneDB CDS 2874180 2874386 . + . mRNA SPBP4H10.04 ; colour "2" ;
chromosome2 GeneDB CDS 2874541 2875859 . + . mRNA SPBP4H10.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 2874136 2874141 . + . misc_feature unknown_2289 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2874167 2874179 . + . misc_feature unknown_2290 ; colour "6" ; note "ttaacaatcaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2874387 2874392 . + . misc_feature unknown_2291 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2874529 2874540 . + . misc_feature unknown_2292 ; colour "6" ; note "ctgacagcttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2875860 2875999 . + . mRNA SPBP4H10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.04" ; systematic_id "SPBP4H10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2876111 2876232 . - . mRNA SPBP4H10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.05c" ; systematic_id "SPBP4H10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2876233 2877369 . - . mRNA SPBP4H10.05c ; systematic_id "SPBP4H10.05c" ; colour "2" ; gene "spe2 ||| SPBP4H10.05c" ; Alias "spe2" ; db_xref "SPD:17/17H11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004014; adenosylmethionine decarboxylase activity
GO:0015940; pantothenate biosynthesis
GO:0008295; spermidine biosynthesis
GO:0006597; spermine biosynthesis" ; primary_name "spe2" ; product "S-adenosylmethionine decarboxylase proenzyme Spe2" ; EC_number "4.1.1.50" ;
chromosome2 GeneDB CDS 2876233 2877369 . - . mRNA SPBP4H10.05c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2877368 2877546 . - . mRNA SPBP4H10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.05c" ; systematic_id "SPBP4H10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2877766 2877849 . - . mRNA SPBP4H10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.06c" ; systematic_id "SPBP4H10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2877850 2881368 . - . mRNA SPBP4H10.06c ; systematic_id "SPBP4H10.06c" ; colour "2" ; gene "cut14 ||| SPBP4H10.06c" ; Alias "cut14" ; db_xref "SPD:34/34A08" ; synonym "smc2" ; GO "GO:0000796; condensin complex
GO:0005737; cytoplasm
GO:0000939; inner kinetochore of condensed chromosome
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0034500; rDNA separation
GO:0016887; ATPase activity
GO:0007076; mitotic chromosome condensation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SMC family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YFR031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=species distribution, conserved in Eukaryotes only; date=20100902" ; primary_name "cut14" ; product "condensin complex subunit Cut14" ;
chromosome2 GeneDB CDS 2877850 2881368 . - . mRNA SPBP4H10.06c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2881367 2881498 . - . mRNA SPBP4H10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.06c" ; systematic_id "SPBP4H10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2881775 2881804 . + . mRNA SPBP4H10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.07" ; systematic_id "SPBP4H10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2881805 2883556 . + . mRNA SPBP4H10.07 ; db_xref "SPD:36/36A08" ; systematic_id "SPBP4H10.07" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=similar to S. pombe SPCC4G3.12c (paralog); date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPBP4H10.07" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB CDS 2881805 2883556 . + . mRNA SPBP4H10.07 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2883557 2884084 . + . mRNA SPBP4H10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.07" ; systematic_id "SPBP4H10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2884360 2884787 . + . mRNA SPBP4H10.08 ; systematic_id "SPBP4H10.08" ; colour "7" ; gene "qcr10 ||| SPBP4H10.08" ; Alias "qcr10" ; db_xref "SPD:03/03E04" ; GO "GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750; respiratory chain complex III (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR001W-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "qcr10" ; product "Reiske ISP-associated protein, ubiquinol- cytochrome-c reductase complex subunit Qcr10 (predicted)" ;
chromosome2 GeneDB CDS 2884360 2884371 . + . mRNA SPBP4H10.08 ; colour "7" ;
chromosome2 GeneDB CDS 2884414 2884484 . + . mRNA SPBP4H10.08 ; colour "7" ;
chromosome2 GeneDB CDS 2884537 2884580 . + . mRNA SPBP4H10.08 ; colour "7" ;
chromosome2 GeneDB CDS 2884631 2884680 . + . mRNA SPBP4H10.08 ; colour "7" ;
chromosome2 GeneDB CDS 2884725 2884787 . + . mRNA SPBP4H10.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 2884372 2884377 . + . misc_feature unknown_2293 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2884401 2884413 . + . misc_feature unknown_2294 ; colour "6" ; note "ttaacatgattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2884485 2884490 . + . misc_feature unknown_2295 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome2 GeneDB intron 2884485 2884536 . + . intron SPBP4H10.08 ; systematic_id "SPBP4H10.08" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2884520 2884536 . + . misc_feature unknown_2296 ; colour "6" ; note "ttaacattaaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2884581 2884586 . + . misc_feature unknown_2297 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 2884581 2884630 . + . intron SPBP4H10.08 ; systematic_id "SPBP4H10.08" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2884615 2884630 . + . misc_feature unknown_2298 ; colour "6" ; note "ctaataagctatgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2884681 2884686 . + . misc_feature unknown_2299 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB intron 2884681 2884724 . + . intron SPBP4H10.08 ; systematic_id "SPBP4H10.08" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2884711 2884724 . + . misc_feature unknown_2300 ; colour "6" ; note "ctaacaagggacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2884788 2884913 . + . mRNA SPBP4H10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.08" ; systematic_id "SPBP4H10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2886001 2886371 . + . misc_RNA SPNCRNA.410 ; db_xref "PMID:18488015" ; synonym "SPNG1731" ; systematic_id "SPNCRNA.410" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 2888450 2889736 . + . mRNA SPBP4H10.09 ; systematic_id "SPBP4H10.09" ; colour "2" ; gene "rsv1 ||| SPBP4H10.09" ; Alias "rsv1" ; db_xref "SPD:32/32G06" ; GO "GO:0016566; specific transcriptional repressor activity
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0042149; cellular response to glucose starvation
GO:0045912; negative regulation of carbohydrate metabolic process
; negative regulation of cellular carbohydrate metabolic process by repression of transcription
GO:0010674; negative regulation of transcription from RNA polymerase II promoter, meiotic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YGL035C and YGL209W and YER028C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17927811; date=20080721 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17927811; date=20090110" ; primary_name "rsv1" ; product "transcription factor Rsv1" ;
chromosome2 GeneDB CDS 2888450 2889736 . + . mRNA SPBP4H10.09 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2889737 2889979 . + . mRNA SPBP4H10.09 ; ID "SPBP4H10.09" ; systematic_id "SPBP4H10.09" ; note "inferred from AF016222" ;
chromosome2 GeneDB polyA_site 2889980 2889985 . + . mRNA SPBP4H10.09 ; temporary_systematic_id "SPBP4H10.09" ; note "AF016222" ;
chromosome2 GeneDB CDS_parts 2890645 2891823 . + . mRNA SPBP4H10.10 ; db_xref "SPD:18/18G01" ; systematic_id "SPBP4H10.10" ; colour "10" ; GO "GO:0004252; serine-type endopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPBC13E7.11; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; gene "SPBP4H10.10" ; product "rhomboid family protease" ;
chromosome2 GeneDB CDS 2890645 2891823 . + . mRNA SPBP4H10.10 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 2892170 2892338 . - . mRNA SPBP4H10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.11c" ; systematic_id "SPBP4H10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2892339 2894408 . - . mRNA SPBP4H10.11c ; systematic_id "SPBP4H10.11c" ; colour "2" ; gene "SPBP4H10.11c ||| lcf2" ; Alias "lcf2" ; db_xref "SPD:46/46E01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR317W and YIL009W and YMR246W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human ACSL3 and ACSL4 ortholog; date=20100217 ||| term=misc, substrate myristic acid preferring; db_xref=PMID:18071249; date=20100217" ; GO "GO:0006499; N-terminal protein myristoylation
GO:0005737; cytoplasm
GO:0004467; long-chain-fatty-acid-CoA ligase activity
GO:0070317; negative regulation of G1 to G0 transition
GO:0001676; long-chain fatty acid metabolic process" ; primary_name "lcf2" ; product "long-chain-fatty-acid-CoA ligase" ; EC_number "6.2.1.3" ;
chromosome2 GeneDB CDS 2892339 2894408 . - . mRNA SPBP4H10.11c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2894407 2894815 . - . mRNA SPBP4H10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.11c" ; systematic_id "SPBP4H10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2895855 2896587 . + . mRNA SPBP4H10.12 ; db_xref "SPD:42/42F11" ; systematic_id "SPBP4H10.12" ; colour "10" ; GO "GO:0016020; membrane
GO:0003824; catalytic activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR137W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBP4H10.12" ; product "conserved protein" ;
chromosome2 GeneDB CDS 2895855 2895863 . + . mRNA SPBP4H10.12 ; colour "10" ;
chromosome2 GeneDB CDS 2896001 2896459 . + . mRNA SPBP4H10.12 ; colour "10" ;
chromosome2 GeneDB CDS 2896516 2896587 . + . mRNA SPBP4H10.12 ; colour "10" ;
chromosome2 GeneDB misc_feature 2895864 2895869 . + . misc_feature unknown_2301 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2895980 2896000 . + . misc_feature unknown_2302 ; colour "6" ; note "ctaattttcattactgtgtag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2897100 2897531 . + . mRNA SPBP4H10.13 ; systematic_id "SPBP4H10.13" ; colour "7" ; gene "rps2302 ||| rps23-2 ||| SPBP4H10.13" ; Alias "rps2302" ; db_xref "SPD:39/39G11" ; synonym "rps23-2" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR118W and YPR132W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps2302" ; product "40S ribosomal protein S23 (predicted)" ;
chromosome2 GeneDB CDS 2897100 2897531 . + . mRNA SPBP4H10.13 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2897532 2897557 . + . mRNA SPBP4H10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.13" ; systematic_id "SPBP4H10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2897837 2898279 . - . mRNA SPBP4H10.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.14c" ; systematic_id "SPBP4H10.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2898280 2899206 . - . mRNA SPBP4H10.14c ; db_xref "SPD:12/12H11" ; systematic_id "SPBP4H10.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBP4H10.14c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2898280 2899206 . - . mRNA SPBP4H10.14c ; colour "8" ;
chromosome2 GeneDB 5'-UTR 2899205 2899541 . - . mRNA SPBP4H10.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.14c" ; systematic_id "SPBP4H10.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 2901243 2902541 . + . misc_RNA SPNCRNA.411 ; db_xref "PMID:18488015" ; synonym "SPNG1738" ; systematic_id "SPNCRNA.411" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 2903103 2905881 . + . mRNA SPBP4H10.15 ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00630; ||| KEGG:MAP00720; ||| SPD:39/39A08" ; systematic_id "SPBP4H10.15" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, proteolytic cleavage; cv=pt_mod; date=20060825 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; date=20060825 ||| term=orthologous to S. cerevisiae YJL200C (N-term); date=19700101 ||| term=orthologous to S. cerevisiae YJL096W (C-term); date=19700101" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0005739; mitochondrion
GO:0003994; aconitate hydratase activity
GO:0003735; structural constituent of ribosome
GO:0006101; citrate metabolism
GO:0006412; protein biosynthesis
GO:0006099; tricarboxylic acid cycle" ; gene "SPBP4H10.15" ; product "aconitate hydratase/mitochondrial ribosomal protein subunit L49, fusion protein (predicted)" ; EC_number "4.2.1.3" ;
chromosome2 GeneDB CDS 2903103 2905816 . + . mRNA SPBP4H10.15 ; colour "7" ;
chromosome2 GeneDB CDS 2905857 2905881 . + . mRNA SPBP4H10.15 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2906091 2906236 . - . mRNA SPBP4H10.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.16c" ; systematic_id "SPBP4H10.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2906237 2907124 . - . mRNA SPBP4H10.16c ; db_xref "SPD:12/12A10" ; systematic_id "SPBP4H10.16c" ; colour "7" ; GO "GO:0019211; phosphatase activator activity
GO:0033554; cellular response to stress
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR043W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBP4H10.16c" ; product "phosphatase activator (predicted)" ;
chromosome2 GeneDB CDS 2906237 2907124 . - . mRNA SPBP4H10.16c ; colour "7" ;
chromosome2 GeneDB CDS_parts 2907373 2908398 . - . mRNA SPBP4H10.17c ; systematic_id "SPBP4H10.17c" ; colour "10" ; gene "SPBP4H10.17c" ; note "was originally thought to be a ribosomal protein (ISS)" ; obsolete_name "mrps2" ; db_xref "SPD:15/15D10" ; GO "GO:0051722; protein C-terminal methylesterase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR075C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human PPME1 ortholog; date=20100727" ; product "carboxyl methyl esterase (predicted)" ;
chromosome2 GeneDB CDS 2907373 2908398 . - . mRNA SPBP4H10.17c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 2908397 2908613 . - . mRNA SPBP4H10.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.17c" ; systematic_id "SPBP4H10.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2908887 2909831 . - . mRNA SPBP4H10.18c ; db_xref "SPD:13/13C06" ; systematic_id "SPBP4H10.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBP4H10.18c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2908887 2909831 . - . mRNA SPBP4H10.18c ; colour "8" ;
chromosome2 GeneDB 3'-UTR 2910215 2910241 . - . mRNA SPBP4H10.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.19c" ; systematic_id "SPBP4H10.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2910242 2911465 . - . mRNA SPBP4H10.19c ; db_xref "SPD:22/22B08" ; systematic_id "SPBP4H10.19c" ; colour "7" ; GO "GO:0030433; ER-associated protein catabolic process
GO:0006457; protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBP4H10.19c" ; product "calreticulin/calnexin homolog (predicted)" ;
chromosome2 GeneDB CDS 2910242 2911312 . - . mRNA SPBP4H10.19c ; colour "7" ;
chromosome2 GeneDB CDS 2911391 2911465 . - . mRNA SPBP4H10.19c ; colour "7" ;
chromosome2 GeneDB misc_feature 2911313 2911328 . - . misc_feature unknown_2303 ; colour "6" ; note "ctaacttatgtattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2911385 2911390 . - . misc_feature unknown_2304 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2911464 2911695 . - . mRNA SPBP4H10.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.19c" ; systematic_id "SPBP4H10.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2912138 2912227 . + . mRNA SPBP4H10.20 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.20" ; systematic_id "SPBP4H10.20" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2912228 2913371 . + . mRNA SPBP4H10.20 ; systematic_id "SPBP4H10.20" ; colour "2" ; gene "nhm1 ||| DcpS ||| SPBP4H10.20" ; Alias "nhm1" ; db_xref "SPD:43/43H04" ; synonym "DcpS" ; GO "GO:0005634; nucleus
GO:0003723; RNA binding
GO:0000290; deadenylation-dependent decapping
GO:0050072; m7G(5')pppN diphosphatase activity
GO:0000932; cytoplasmic mRNA processing body" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HIT family; db_xref=PMID:12198172; date=19700101 ||| term=human DCPS ortholog; db_xref=PMID:12366830; date=19700101 ||| term=orthologous to S. cerevisiae YLR270W and YOR173W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nhm1" ; product "m7G(5')pppN diphosphatase (predicted)" ;
chromosome2 GeneDB CDS 2912228 2912539 . + . mRNA SPBP4H10.20 ; colour "2" ;
chromosome2 GeneDB CDS 2912582 2912787 . + . mRNA SPBP4H10.20 ; colour "2" ;
chromosome2 GeneDB CDS 2912929 2913116 . + . mRNA SPBP4H10.20 ; colour "2" ;
chromosome2 GeneDB CDS 2913163 2913371 . + . mRNA SPBP4H10.20 ; colour "2" ;
chromosome2 GeneDB misc_feature 2912540 2912545 . + . misc_feature unknown_2305 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2912568 2912581 . + . misc_feature unknown_2306 ; colour "6" ; note "ttaaccgtatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2912788 2912793 . + . misc_feature unknown_2307 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2912915 2912928 . + . misc_feature unknown_2308 ; colour "6" ; note "ctaacaaaaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2913117 2913122 . + . misc_feature unknown_2309 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2913148 2913162 . + . misc_feature unknown_2310 ; colour "6" ; note "ctgacattcctctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2913372 2913450 . + . mRNA SPBP4H10.20 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.20" ; systematic_id "SPBP4H10.20" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2913506 2913575 . - . mRNA SPBP4H10.21c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.21c" ; systematic_id "SPBP4H10.21c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2913576 2914220 . - . mRNA SPBP4H10.21c ; systematic_id "SPBP4H10.21c" ; colour "2" ; gene "sld5 ||| SPBP4H10.21c" ; Alias "sld5" ; db_xref "SPD:42/42F06" ; GO "GO:0006270; DNA replication initiation
GO:0000811; GINS complex
GO:0034613; cellular protein localization
GO:0006271; DNA strand elongation during DNA replication
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16199877; date=19700101 ||| term=orthologous to S. cerevisiae YDR489W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:16199877; date=20101004" ; primary_name "sld5" ; product "GINS complex subunit Sld5" ;
chromosome2 GeneDB CDS 2913576 2914220 . - . mRNA SPBP4H10.21c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 2914219 2914279 . - . mRNA SPBP4H10.21c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4H10.21c" ; systematic_id "SPBP4H10.21c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2914828 2914869 . - . mRNA SPBC1703.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.01c" ; systematic_id "SPBC1703.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2914870 2915595 . - . mRNA SPBC1703.01c ; systematic_id "SPBC1703.01c" ; colour "7" ; gene "SPBP4H10.22c ||| SPBC1703.01c" ; Alias "SPBP4H10.22c" ; db_xref "SPD:50/50B11" ; synonym "SPBP4H10.22c" ; GO "GO:0006364; rRNA processing
GO:0008033; tRNA processing
GO:0005655; nucleolar ribonuclease P complex
GO:0000172; ribonuclease MRP complex
GO:0000171; ribonuclease MRP activity
GO:0004526; ribonuclease P activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR257W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBP4H10.22c" ; product "RNase P and RNase MRP subunit (predicted)" ;
chromosome2 GeneDB CDS 2914870 2915018 . - . mRNA SPBC1703.01c ; colour "7" ;
chromosome2 GeneDB CDS 2915091 2915595 . - . mRNA SPBC1703.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 2914875 2914989 . + . misc_feature unknown_2311 ; note "nominal overlap with cosmid SPBC1703 and plasmid SPBP4H10" ;
chromosome2 GeneDB misc_feature 2915019 2915031 . - . misc_feature unknown_2312 ; colour "6" ; note "ctaattcgtctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2915085 2915090 . - . misc_feature unknown_2313 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2915594 2915714 . - . mRNA SPBC1703.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.01c" ; systematic_id "SPBC1703.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2916263 2916271 . + . mRNA SPBC1703.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.02" ; systematic_id "SPBC1703.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2916272 2918667 . + . mRNA SPBC1703.02 ; systematic_id "SPBC1703.02" ; colour "2" ; gene "rsc9 ||| SPBC1703.02" ; note "YML127W is similar at the C-terminus but has no ARID domain" ; Alias "rsc9" ; db_xref "SPD:28/28F01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ARID domain; date=19700101 ||| term=orthologous to S. cerevisiae YML127W (C-term); date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0016586; RSC complex
GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0006338; chromatin remodeling
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0042790; transcription of nuclear rRNA large RNA polymerase I transcript" ; primary_name "rsc9" ; product "RSC complex subunit Rsc9" ;
chromosome2 GeneDB CDS 2916272 2916384 . + . mRNA SPBC1703.02 ; colour "2" ;
chromosome2 GeneDB CDS 2916438 2918667 . + . mRNA SPBC1703.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 2916385 2916390 . + . misc_feature unknown_2314 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2916424 2916437 . + . misc_feature unknown_2315 ; colour "6" ; note "ctaatcctttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2918668 2918785 . + . mRNA SPBC1703.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.02" ; systematic_id "SPBC1703.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2918847 2918967 . - . mRNA SPBC1703.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.03c" ; systematic_id "SPBC1703.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2918968 2921047 . - . mRNA SPBC1703.03c ; db_xref "SPD:37/37C10" ; systematic_id "SPBC1703.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL063C; date=19700101 ||| term=armadillo repeat protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human HEATR3 ortholog; date=20100727" ; colour "10" ; gene "SPBC1703.03c" ; product "armadillo repeat protein, unknown biological role" ;
chromosome2 GeneDB CDS 2918968 2920833 . - . mRNA SPBC1703.03c ; colour "10" ;
chromosome2 GeneDB CDS 2920919 2921047 . - . mRNA SPBC1703.03c ; colour "10" ;
chromosome2 GeneDB misc_feature 2920834 2920850 . - . misc_feature unknown_2316 ; colour "6" ; note "ctaactcttctaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2920913 2920918 . - . misc_feature unknown_2317 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 2921241 2923535 . + . mRNA SPBC1703.04 ; systematic_id "SPBC1703.04" ; colour "7" ; gene "mlh1 ||| SPBC1703.04" ; Alias "mlh1" ; db_xref "SPD:28/28C06" ; GO "GO:0006298; mismatch repair
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer, hereditary nonpolyposis colon; date=20060724 ||| term=disease associated, cancer; date=20060724 ||| term=orthologous to S. cerevisiae YMR167W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MLH1 ortholog; date=20100217 ||| term=warning, non-consensus branch site; date=20100805" ; primary_name "mlh1" ; product "MutL family protein Mlh1 (predicted)" ;
chromosome2 GeneDB CDS 2921241 2921312 . + . mRNA SPBC1703.04 ; colour "7" ;
chromosome2 GeneDB CDS 2921441 2921578 . + . mRNA SPBC1703.04 ; colour "7" ;
chromosome2 GeneDB CDS 2921644 2921816 . + . mRNA SPBC1703.04 ; colour "7" ;
chromosome2 GeneDB CDS 2921864 2923535 . + . mRNA SPBC1703.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 2921313 2921318 . + . misc_feature unknown_2318 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2921428 2921440 . + . misc_feature unknown_2319 ; colour "6" ; note "ctaactaattaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2921579 2921584 . + . misc_feature unknown_2320 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2921817 2921822 . + . misc_feature unknown_2321 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2921851 2921863 . + . misc_feature unknown_2322 ; colour "6" ; note "ctaaccttttaag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 2923910 2924036 . + . mRNA SPBC1703.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.05" ; systematic_id "SPBC1703.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2924037 2925201 . + . mRNA SPBC1703.05 ; db_xref "SPD:18/18D07" ; systematic_id "SPBC1703.05" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0030490; processing of 20S pre-rRNA
GO:0004672; protein kinase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL207W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC1703.05" ; product "protein kinase, RIO family (predicted)" ;
chromosome2 GeneDB CDS 2924037 2924078 . + . mRNA SPBC1703.05 ; colour "7" ;
chromosome2 GeneDB CDS 2924233 2925201 . + . mRNA SPBC1703.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 2924079 2924084 . + . misc_feature unknown_2323 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2924219 2924232 . + . misc_feature unknown_2324 ; colour "6" ; note "ctaacaagttatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2925202 2925277 . + . mRNA SPBC1703.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.05" ; systematic_id "SPBC1703.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2925512 2927554 . + . mRNA SPBC1703.06 ; systematic_id "SPBC1703.06" ; colour "2" ; gene "pof10 ||| SPBC1703.06" ; Alias "pof10" ; db_xref "SPD:27/27F04" ; GO "GO:0005737; cytoplasm
GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=orthologous to S. cerevisiae YML088W; date=19700101 ||| term=phenotype, viable; cv=phenotype; evidence=TAS; db_xref=PMID:15147268; date=20080123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pof10" ; product "F-box protein Pof10" ;
chromosome2 GeneDB CDS 2925512 2925620 . + . mRNA SPBC1703.06 ; colour "2" ;
chromosome2 GeneDB CDS 2925675 2927554 . + . mRNA SPBC1703.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 2925621 2925626 . + . misc_feature unknown_2325 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2925661 2925674 . + . misc_feature unknown_2326 ; colour "6" ; note "ttaactttttctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2927555 2927698 . + . mRNA SPBC1703.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.06" ; systematic_id "SPBC1703.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2928014 2930172 . + . mRNA SPBC1703.07 ; systematic_id "SPBC1703.07" ; colour "7" ; gene "SPBC1703.07" ; note "Direction of reaction forming acetyl-CoA and oxaloacetate (PMID:10794176)" ; db_xref "KEGG:MAP00020; ||| SPD:37/37F10" ; GO "GO:0005737; cytoplasm
GO:0003878; ATP citrate synthase activity
GO:0006085; acetyl-CoA biosynthesis
GO:0006101; citrate metabolism
GO:0006633; fatty acid biosynthesis
GO:0006099; tricarboxylic acid cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; product "ATP citrate synthase subunit 1 (predicted)" ; EC_number "2.3.3.8" ;
chromosome2 GeneDB CDS 2928014 2928173 . + . mRNA SPBC1703.07 ; colour "7" ;
chromosome2 GeneDB CDS 2928221 2928294 . + . mRNA SPBC1703.07 ; colour "7" ;
chromosome2 GeneDB CDS 2928559 2930172 . + . mRNA SPBC1703.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 2928174 2928179 . + . misc_feature unknown_2327 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2928206 2928220 . + . misc_feature unknown_2328 ; colour "6" ; note "ctaacgcgtgcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2928295 2928300 . + . misc_feature unknown_2329 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2928542 2928558 . + . misc_feature unknown_2330 ; colour "6" ; note "ttaactgaaataattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2930173 2930344 . + . mRNA SPBC1703.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.07" ; systematic_id "SPBC1703.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2930386 2931189 . - . mRNA SPBC1703.08c ; db_xref "SPD:43/43C08" ; systematic_id "SPBC1703.08c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER183C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030272; 5-formyltetrahydrofolate cyclo-ligase activity
GO:0009396; folic acid and derivative biosynthesis
GO:0005739; mitochondrion" ; gene "SPBC1703.08c" ; product "5-formyltetrahydrofolate cyclo-ligase (predicted)" ; EC_number "6.3.3.2" ;
chromosome2 GeneDB CDS 2930386 2930498 . - . mRNA SPBC1703.08c ; colour "7" ;
chromosome2 GeneDB CDS 2930550 2930711 . - . mRNA SPBC1703.08c ; colour "7" ;
chromosome2 GeneDB CDS 2930760 2930888 . - . mRNA SPBC1703.08c ; colour "7" ;
chromosome2 GeneDB CDS 2930934 2931062 . - . mRNA SPBC1703.08c ; colour "7" ;
chromosome2 GeneDB CDS 2931108 2931189 . - . mRNA SPBC1703.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 2930499 2930511 . - . misc_feature unknown_2331 ; colour "6" ; note "ctaacgtgaccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2930544 2930549 . - . misc_feature unknown_2332 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2930712 2930725 . - . misc_feature unknown_2333 ; colour "6" ; note "ttaatcatatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2930754 2930759 . - . misc_feature unknown_2334 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2930889 2930906 . - . misc_feature unknown_2335 ; colour "6" ; note "ctaatcatgcaaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2930928 2930933 . - . misc_feature unknown_2336 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2931063 2931083 . - . misc_feature unknown_2337 ; colour "6" ; note "ttaacaattaaatgcataaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2931102 2931107 . - . misc_feature unknown_2338 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2931660 2931762 . + . mRNA SPBC1703.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.09" ; systematic_id "SPBC1703.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2931763 2932419 . + . mRNA SPBC1703.09 ; db_xref "SPD:42/42G03" ; systematic_id "SPBC1703.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC1703.09" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 2931763 2932227 . + . mRNA SPBC1703.09 ; colour "8" ;
chromosome2 GeneDB CDS 2932276 2932419 . + . mRNA SPBC1703.09 ; colour "8" ;
chromosome2 GeneDB misc_feature 2932228 2932233 . + . misc_feature unknown_2339 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2932264 2932275 . + . misc_feature unknown_2340 ; colour "6" ; note "ttaacaaattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2932420 2932535 . + . mRNA SPBC1703.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.09" ; systematic_id "SPBC1703.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2932983 2932988 . + . mRNA SPBC1703.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.10" ; systematic_id "SPBC1703.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2932989 2934041 . + . mRNA SPBC1703.10 ; systematic_id "SPBC1703.10" ; colour "2" ; gene "ypt1 ||| SPBC1703.10" ; Alias "ypt1" ; db_xref "SPD:40/40C07" ; GO "GO:0005525; GTP binding
GO:0007264; small GTPase mediated signal transduction
GO:0000139; Golgi membrane
GO:0005789; endoplasmic reticulum membrane
GO:0003924; GTPase activity
GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Ypt subfamily; db_xref=PMID:2740223; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:2328721; date=19700101 ||| term=orthologous to S. cerevisiae YFL038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ypt1" ; product "GTPase Ypt1" ;
chromosome2 GeneDB CDS 2932989 2932999 . + . mRNA SPBC1703.10 ; colour "2" ;
chromosome2 GeneDB CDS 2933168 2933291 . + . mRNA SPBC1703.10 ; colour "2" ;
chromosome2 GeneDB CDS 2933343 2933390 . + . mRNA SPBC1703.10 ; colour "2" ;
chromosome2 GeneDB CDS 2933454 2933550 . + . mRNA SPBC1703.10 ; colour "2" ;
chromosome2 GeneDB CDS 2933710 2934041 . + . mRNA SPBC1703.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 2933000 2933005 . + . misc_feature unknown_2341 ; colour "6" ; note "gtagta, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2933155 2933167 . + . misc_feature unknown_2342 ; colour "6" ; note "ctaatattaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2933292 2933297 . + . misc_feature unknown_2343 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2933329 2933342 . + . misc_feature unknown_2344 ; colour "6" ; note "ctaactttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2933391 2933396 . + . misc_feature unknown_2345 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2933437 2933453 . + . misc_feature unknown_2346 ; colour "6" ; note "ttaacgatttatcatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2933551 2933556 . + . misc_feature unknown_2347 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2933692 2933709 . + . misc_feature unknown_2348 ; colour "6" ; note "ctaatgcttgcttcttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2934042 2934193 . + . mRNA SPBC1703.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.10" ; systematic_id "SPBC1703.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2934743 2934981 . + . mRNA SPBC1703.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.11" ; systematic_id "SPBC1703.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2934982 2935821 . + . mRNA SPBC1703.11 ; db_xref "SPD:11/11A04" ; systematic_id "SPBC1703.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, optic atrophy; date=19700101 ||| term=disease associated, neurological disorders; date=20100304 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC1703.11" ; product "optic atrophy 3 family protein" ;
chromosome2 GeneDB CDS 2934982 2935089 . + . mRNA SPBC1703.11 ; colour "10" ;
chromosome2 GeneDB CDS 2935155 2935312 . + . mRNA SPBC1703.11 ; colour "10" ;
chromosome2 GeneDB CDS 2935431 2935821 . + . mRNA SPBC1703.11 ; colour "10" ;
chromosome2 GeneDB misc_feature 2935090 2935095 . + . misc_feature unknown_2349 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2935135 2935154 . + . misc_feature unknown_2350 ; colour "6" ; note "ctaacgaaatttctatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2935313 2935318 . + . misc_feature unknown_2351 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2935417 2935430 . + . misc_feature unknown_2352 ; colour "6" ; note "ctaacaatttacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2935822 2935953 . + . mRNA SPBC1703.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.11" ; systematic_id "SPBC1703.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2936173 2936210 . + . mRNA SPBC1703.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.12" ; systematic_id "SPBC1703.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2936211 2938118 . + . mRNA SPBC1703.12 ; systematic_id "SPBC1703.12" ; colour "2" ; gene "SPBC1703.12 ||| ubp9" ; db_xref "SPD:26/26F04" ; Alias "ubp9" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=orthologous to S. cerevisiae YER098W and YBL067C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human USP12 and USP46 ortholog; date=20101001" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016579; protein deubiquitination
GO:0032153; cell division site
GO:0051286; cell tip
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein locaization
GO:0034613; cellular protein locaization
GO:0006897; endocytosis" ; primary_name "ubp9" ; product "ubiquitin C-terminal hydrolase Ubp9" ;
chromosome2 GeneDB CDS 2936211 2936237 . + . mRNA SPBC1703.12 ; colour "2" ;
chromosome2 GeneDB CDS 2936282 2936389 . + . mRNA SPBC1703.12 ; colour "2" ;
chromosome2 GeneDB CDS 2936439 2936452 . + . mRNA SPBC1703.12 ; colour "2" ;
chromosome2 GeneDB CDS 2936510 2938118 . + . mRNA SPBC1703.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 2936238 2936243 . + . misc_feature unknown_2353 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2936268 2936281 . + . misc_feature unknown_2354 ; colour "6" ; note "ctgacaaactatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2936390 2936395 . + . misc_feature unknown_2355 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2936424 2936438 . + . misc_feature unknown_2356 ; colour "6" ; note "ctaacatatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2936453 2936458 . + . misc_feature unknown_2357 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2936498 2936509 . + . misc_feature unknown_2358 ; colour "6" ; note "ctaacgaaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2938119 2938651 . + . mRNA SPBC1703.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.12" ; systematic_id "SPBC1703.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 2939715 2939786 . + . tRNA SPBTRNAPRO.07 ; systematic_id "SPBTRNAPRO.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033448; AGG codon-amino acid adaptor activity" ; gene "SPBTRNAPRO.07" ; product "tRNA Proline" ; note "tRNA Pro anticodon AGG" ;
chromosome2 GeneDB 3'-UTR 2939962 2940030 . - . mRNA SPBC1703.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.13c" ; systematic_id "SPBC1703.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2940031 2940966 . - . mRNA SPBC1703.13c ; db_xref "SPD:13/13B04" ; systematic_id "SPBC1703.13c" ; colour "7" ; GO "GO:0031966; mitochondrial membrane
GO:0005315; inorganic phosphate transporter activity
GO:0035435; phosphate transmembrane transport
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YER053C and YJR077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1703.13c" ; product "mitochondrial inorganic phosphate transporter (predicted)" ;
chromosome2 GeneDB CDS 2940031 2940966 . - . mRNA SPBC1703.13c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2940965 2941229 . - . mRNA SPBC1703.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.13c" ; systematic_id "SPBC1703.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2941840 2942036 . - . mRNA SPBC1703.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.14c" ; systematic_id "SPBC1703.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2942037 2944580 . - . mRNA SPBC1703.14c ; systematic_id "SPBC1703.14c" ; colour "2" ; gene "top1 ||| SPBC1703.14c" ; Alias "top1" ; db_xref "SPD:33/33H03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:6090122; date=19700101 ||| term=orthologous to S. cerevisiae YOL006C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human TOP1 ortholog; date=20100217" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0007076; mitotic chromosome condensation
GO:0003917; DNA topoisomerase type I activity
GO:0006333; chromatin assembly or disassembly
GO:0006265; DNA topological change
GO:0006325; establishment and/or maintenance of chromatin architecture
GO:0042790; transcription of nuclear rRNA large RNA polymerase I transcript" ; primary_name "top1" ; product "DNA topoisomerase I" ; EC_number "5.99.1.2" ;
chromosome2 GeneDB CDS 2942037 2944367 . - . mRNA SPBC1703.14c ; colour "2" ;
chromosome2 GeneDB CDS 2944414 2944514 . - . mRNA SPBC1703.14c ; colour "2" ;
chromosome2 GeneDB CDS 2944568 2944580 . - . mRNA SPBC1703.14c ; colour "2" ;
chromosome2 GeneDB misc_feature 2944368 2944379 . - . misc_feature unknown_2359 ; colour "6" ; note "ctaattgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2944408 2944413 . - . misc_feature unknown_2360 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2944515 2944529 . - . misc_feature unknown_2361 ; colour "6" ; note "ttaacaactgaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2944562 2944567 . - . misc_feature unknown_2362 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2944579 2944586 . - . mRNA SPBC1703.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.14c" ; systematic_id "SPBC1703.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2945136 2945165 . - . mRNA SPBC1703.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.15c" ; systematic_id "SPBC1703.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2945166 2947080 . - . mRNA SPBC1703.15c ; systematic_id "SPBC1703.15c" ; colour "2" ; gene "vps33 ||| SPBC1703.15c ||| SPBC2A9.01c" ; Alias "vps33" ; db_xref "SPD:37/37A05" ; synonym "SPBC2A9.01c" ; GO "GO:0030897; HOPS complex
GO:0006895; Golgi to endosome transport
GO:0045324; late endosome to vacuole transport
GO:0006623; protein targeting to vacuole
GO:0042144; vacuole fusion, non-autophagic
GO:0007033; vacuole organization and biogenesis
GO:0048278; vesicle docking
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR396C; date=19700101 ||| term=disease associated, ARC syndrome; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps33" ; product "vacuolar sorting protein Vps33" ;
chromosome2 GeneDB CDS 2945166 2945935 . - . mRNA SPBC1703.15c ; colour "2" ;
chromosome2 GeneDB CDS 2945987 2946259 . - . mRNA SPBC1703.15c ; colour "2" ;
chromosome2 GeneDB CDS 2946300 2946978 . - . mRNA SPBC1703.15c ; colour "2" ;
chromosome2 GeneDB CDS 2947024 2947080 . - . mRNA SPBC1703.15c ; colour "2" ;
chromosome2 GeneDB misc_feature 2945936 2945947 . - . misc_feature unknown_2363 ; colour "6" ; note "ttaattagatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2945981 2945986 . - . misc_feature unknown_2364 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2946260 2946271 . - . misc_feature unknown_2365 ; colour "6" ; note "ctaactgattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2946294 2946299 . - . misc_feature unknown_2366 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2946377 2947673 . + . misc_feature unknown_2367 ; note "nominal overlap with cosmid SPBC1703 and SPBC2A9" ;
chromosome2 GeneDB misc_feature 2946979 2946998 . - . misc_feature unknown_2368 ; colour "6" ; note "ctaatgataatgtgttaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2947018 2947023 . - . misc_feature unknown_2369 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2947079 2947120 . - . mRNA SPBC1703.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1703.15c" ; systematic_id "SPBC1703.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2948595 2948647 . + . mRNA SPBC2A9.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.02" ; systematic_id "SPBC2A9.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2948648 2949535 . + . mRNA SPBC2A9.02 ; db_xref "SPD:12/12A11" ; systematic_id "SPBC2A9.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL056C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824" ; colour "10" ; gene "SPBC2A9.02" ; product "NAD dependent epimerase/dehydratase family protein" ;
chromosome2 GeneDB CDS 2948648 2949535 . + . mRNA SPBC2A9.02 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 2949536 2950030 . + . mRNA SPBC2A9.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.02" ; systematic_id "SPBC2A9.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2951128 2951159 . + . mRNA SPBC2A9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.03" ; systematic_id "SPBC2A9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2951160 2952497 . + . mRNA SPBC2A9.03 ; db_xref "SPD:20/20G01" ; systematic_id "SPBC2A9.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPBC2A9.03" ; product "WD40/YVTN repeat-like" ;
chromosome2 GeneDB CDS 2951160 2951196 . + . mRNA SPBC2A9.03 ; colour "10" ;
chromosome2 GeneDB CDS 2951254 2952497 . + . mRNA SPBC2A9.03 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 2952727 2952815 . - . mRNA SPBC2A9.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.04c" ; systematic_id "SPBC2A9.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2952816 2955041 . - . mRNA SPBC2A9.04c ; db_xref "SPD:38/38A09" ; systematic_id "SPBC2A9.04c" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0005634; nucleus
GO:0006325; establishment and/or maintenance of chromatin architecture
GO:0006342; chromatin silencing
GO:0006511; ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDR143C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC2A9.04c" ; product "sir antagonist ortholog (predicted)" ;
chromosome2 GeneDB CDS 2952816 2955041 . - . mRNA SPBC2A9.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2955040 2955417 . - . mRNA SPBC2A9.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.04c" ; systematic_id "SPBC2A9.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2955966 2956468 . - . mRNA SPBC2A9.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.05c" ; systematic_id "SPBC2A9.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2956469 2957189 . - . mRNA SPBC2A9.05c ; systematic_id "SPBC2A9.05c" ; colour "7" ; gene "SPBC2A9.05c" ; db_xref "SPD:08/08E09" ; Alias "tvp23" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR084C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016192; vesicle-mediated transport" ; primary_name "tvp23" ; product "Golgi transport protein Tvp23 (predicted)" ;
chromosome2 GeneDB CDS 2956469 2956904 . - . mRNA SPBC2A9.05c ; colour "7" ;
chromosome2 GeneDB CDS 2956966 2957189 . - . mRNA SPBC2A9.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 2956905 2956922 . - . misc_feature unknown_2370 ; colour "6" ; note "ctaaacaaataaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2956960 2956965 . - . misc_feature unknown_2371 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 2957510 2957586 . - . mRNA SPBC2A9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.06c" ; systematic_id "SPBC2A9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2957587 2958430 . - . mRNA SPBC2A9.06c ; db_xref "SPD:43/43D08" ; systematic_id "SPBC2A9.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL193W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005783; endoplasmic reticulum
GO:0008834; di-trans,poly-cis- decaprenylcistransferase activity
GO:0006486; protein amino acid glycosylation" ; gene "SPBC2A9.06c" ; product "di-trans,poly-cis-decaprenylcistransferase(predicted)" ; EC_number "2.5.1.-" ;
chromosome2 GeneDB CDS 2957587 2958053 . - . mRNA SPBC2A9.06c ; colour "7" ;
chromosome2 GeneDB CDS 2958121 2958430 . - . mRNA SPBC2A9.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 2958054 2958067 . - . misc_feature unknown_2372 ; colour "6" ; note "ttaacagattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2958115 2958120 . - . misc_feature unknown_2373 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2958429 2958552 . - . mRNA SPBC2A9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.06c" ; systematic_id "SPBC2A9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2959078 2959902 . - . mRNA SPBC2A9.07c ; db_xref "SPD:10/10F10" ; systematic_id "SPBC2A9.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PARP type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, gene structure updated; cv=warning; attribution=pers. comm. C. Arnason; date=20090924 ||| term=species distribution, conserved in Metazoa; date=20091111 ||| term=species distribution, conserved in Vertebrates; date=20091111 ||| term=human LIG3 and PARP1 ortholog; date=20091111" ; colour "10" ; gene "SPBC2A9.07c" ; product "zf-PARP type zinc finger protein" ; note "human LIG3 does not appear to be a ligase, but this region may act as a DNA nick sensor" ;
chromosome2 GeneDB CDS 2959078 2959902 . - . mRNA SPBC2A9.07c ; colour "10" ;
chromosome2 GeneDB CDS_parts 2960489 2960729 . + . mRNA SPBC2A9.13 ; db_xref "SPD:01/01B07" ; systematic_id "SPBC2A9.13" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC2A9.13" ; product "sequence orphan" ; note "identified by confirmed intron" ;
chromosome2 GeneDB CDS 2960489 2960525 . + . mRNA SPBC2A9.13 ; colour "8" ;
chromosome2 GeneDB CDS 2960620 2960729 . + . mRNA SPBC2A9.13 ; colour "8" ;
chromosome2 GeneDB misc_feature 2960489 2960729 . + . misc_feature unknown_2374 ; colour "3" ; note "mRNA from spc01427 326 196" ;
chromosome2 GeneDB intron 2960526 2960619 . - . intron unknown_2375 ; colour "2" ; note "confirmed intron" ;
chromosome2 GeneDB 3'-UTR 2961579 2961667 . - . mRNA SPBC2A9.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.08c" ; systematic_id "SPBC2A9.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2961668 2962532 . - . mRNA SPBC2A9.08c ; systematic_id "SPBC2A9.08c" ; colour "7" ; gene "sec22 ||| SPBC2A9.08c" ; Alias "sec22" ; db_xref "SPD:11/11F01" ; GO "GO:0005484; SNAP receptor activity
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=orthologous to S. cerevisiae YLR268W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec22" ; product "SNARE Sec22 (predicted)" ;
chromosome2 GeneDB CDS 2961668 2961972 . - . mRNA SPBC2A9.08c ; colour "7" ;
chromosome2 GeneDB CDS 2962036 2962199 . - . mRNA SPBC2A9.08c ; colour "7" ;
chromosome2 GeneDB CDS 2962265 2962409 . - . mRNA SPBC2A9.08c ; colour "7" ;
chromosome2 GeneDB CDS 2962517 2962532 . - . mRNA SPBC2A9.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 2961973 2961986 . - . misc_feature unknown_2376 ; colour "6" ; note "ctaacaatttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2962030 2962035 . - . misc_feature unknown_2377 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2962200 2962215 . - . misc_feature unknown_2378 ; colour "6" ; note "ctaaccaaacgtctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2962259 2962264 . - . misc_feature unknown_2379 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2962410 2962423 . - . misc_feature unknown_2380 ; colour "6" ; note "ctgatgaatttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2962511 2962516 . - . misc_feature unknown_2381 ; colour "6" ; note "gtgatt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2962531 2962677 . - . mRNA SPBC2A9.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.08c" ; systematic_id "SPBC2A9.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2962841 2962866 . + . mRNA SPBC2A9.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.09" ; systematic_id "SPBC2A9.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2962867 2963675 . + . mRNA SPBC2A9.09 ; db_xref "SPD:10/10C09" ; systematic_id "SPBC2A9.09" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006457; protein folding
GO:0045944; positive regulation of transcription form RNA polymerse II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YOR281C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=thioredoxin family; date=20081111" ; gene "SPBC2A9.09" ; product "phosducin family protein (predicted)" ;
chromosome2 GeneDB CDS 2962867 2962892 . + . mRNA SPBC2A9.09 ; colour "7" ;
chromosome2 GeneDB CDS 2962937 2963263 . + . mRNA SPBC2A9.09 ; colour "7" ;
chromosome2 GeneDB CDS 2963327 2963675 . + . mRNA SPBC2A9.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 2962893 2962898 . + . misc_feature unknown_2382 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2962925 2962936 . + . misc_feature unknown_2383 ; colour "6" ; note "ttaacaaatcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2963676 2963783 . + . mRNA SPBC2A9.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.09" ; systematic_id "SPBC2A9.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2964108 2964226 . + . mRNA SPBC2A9.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.10" ; systematic_id "SPBC2A9.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2964227 2965075 . + . mRNA SPBC2A9.10 ; db_xref "SPD:11/11B04" ; systematic_id "SPBC2A9.10" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0045449; reguation of transcription
GO:0006417; regulation of translation" ; gene "SPBC2A9.10" ; product "Bin3 family, transcriptional and translational regulator (predicted0" ;
chromosome2 GeneDB CDS 2964227 2964835 . + . mRNA SPBC2A9.10 ; colour "7" ;
chromosome2 GeneDB CDS 2964878 2965075 . + . mRNA SPBC2A9.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 2964836 2964841 . + . misc_feature unknown_2384 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2964859 2964877 . + . misc_feature unknown_2385 ; colour "6" ; note "ctaactcttacttttctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2965076 2965374 . + . mRNA SPBC2A9.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.10" ; systematic_id "SPBC2A9.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2965150 2965216 . - . mRNA SPBC2A9.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.11c" ; systematic_id "SPBC2A9.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2965217 2966522 . - . mRNA SPBC2A9.11c ; systematic_id "SPBC2A9.11c" ; colour "7" ; gene "SPBC2A9.11c ||| SPBC2D10.01c" ; db_xref "SPD:22/22G03" ; synonym "SPBC2D10.01c" ; GO "GO:0051168; nuclear export" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR045C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "nuclear export factor (predicted)" ;
chromosome2 GeneDB CDS 2965217 2965626 . - . mRNA SPBC2A9.11c ; colour "7" ;
chromosome2 GeneDB CDS 2965695 2965824 . - . mRNA SPBC2A9.11c ; colour "7" ;
chromosome2 GeneDB CDS 2965875 2966522 . - . mRNA SPBC2A9.11c ; colour "7" ;
chromosome2 GeneDB misc_feature 2965627 2965640 . - . misc_feature unknown_2386 ; colour "6" ; note "ttaacaatttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2965689 2965694 . - . misc_feature unknown_2387 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2965697 2968376 . + . misc_feature unknown_2388 ; note "nominal overlap with cosmid SPBC2A9_3p and cosmid SPBC2D10" ;
chromosome2 GeneDB misc_feature 2965825 2965839 . - . misc_feature unknown_2389 ; colour "6" ; note "ctaacgttcgactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2965869 2965874 . - . misc_feature unknown_2390 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2966521 2966585 . - . mRNA SPBC2A9.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.11c" ; systematic_id "SPBC2A9.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2967302 2967354 . + . mRNA SPBC2A9.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2A9.12" ; systematic_id "SPBC2A9.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2967355 2968207 . + . mRNA SPBC2A9.12 ; systematic_id "SPBC2A9.12" ; colour "2" ; gene "orc6 ||| SPBC2A9.12 ||| SPBC2D10.02" ; Alias "orc6" ; db_xref "SPD:11/11C03" ; synonym "SPBC2D10.02" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0005656; pre-replicative complex
GO:0003688; DNA replication origin binding
GO:0006270; DNA replication initiation
GO:0006267; pre-replicative complex formation and maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR118C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "orc6" ; product "origin recognition complex subunit Orc6" ;
chromosome2 GeneDB CDS 2967355 2967536 . + . mRNA SPBC2A9.12 ; colour "2" ;
chromosome2 GeneDB CDS 2967595 2968207 . + . mRNA SPBC2A9.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 2967537 2967542 . + . misc_feature unknown_2391 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2967579 2967594 . + . misc_feature unknown_2392 ; colour "6" ; note "ctgactctttaaaag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 2968322 2968795 . - . mRNA SPBC2D10.03c ; db_xref "SPD:04/04D04" ; systematic_id "SPBC2D10.03c" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR090C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human C1orf123 ortholog; date=20100301" ; gene "SPBC2D10.03c" ; product "DUF866 domain protein" ;
chromosome2 GeneDB CDS 2968322 2968795 . - . mRNA SPBC2D10.03c ; colour "10" ;
chromosome2 GeneDB misc_feature 2968322 2968376 . - . misc_feature unknown_2393 ; note "SPBC2D10.03c, full length CDS in c2D10" ;
chromosome2 GeneDB 5'-UTR 2968794 2968950 . - . mRNA SPBC2D10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.03c" ; systematic_id "SPBC2D10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2972138 2972195 . + . mRNA SPBC2D10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.04" ; systematic_id "SPBC2D10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2972196 2974172 . + . mRNA SPBC2D10.04 ; db_xref "SPD:37/37B06" ; systematic_id "SPBC2D10.04" ; colour "10" ; GO "GO:0005509; calcium ion binding
GO:0005737; cytoplasm
GO:0070086; ubiquitin-dependent endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=orthologous to S. cerevisiae YJL084C and YKR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC2D10.04" ; product "arrestin Aly1 related, implicated in endocytosis" ;
chromosome2 GeneDB CDS 2972196 2974172 . + . mRNA SPBC2D10.04 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 2974173 2974559 . + . mRNA SPBC2D10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.04" ; systematic_id "SPBC2D10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2974828 2976272 . + . mRNA SPBC2D10.05 ; systematic_id "SPBC2D10.05" ; colour "2" ; gene "exg3 ||| SPBC2D10.05" ; Alias "exg3" ; db_xref "SPD:44/44F09" ; GO "GO:0004338; glucan 1,3-beta-glucosidase activity
GO:0046557; glucan endo-1,6-beta-glucosidase activity
GO:0005829; cytoplasm
GO:0070879; fungal-type cell wall beta-glucan metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR056W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "exg3" ; product "glucan 1,3-beta-glucosidase Exg3" ; EC_number "3.2.1.-" ;
chromosome2 GeneDB CDS 2974828 2975515 . + . mRNA SPBC2D10.05 ; colour "2" ;
chromosome2 GeneDB CDS 2975566 2976272 . + . mRNA SPBC2D10.05 ; colour "2" ;
chromosome2 GeneDB misc_RNA 2975053 2976498 . - . misc_RNA SPNCRNA.573 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.573" ; synonym "SPNG2AF32" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB misc_feature 2975516 2975521 . + . misc_feature unknown_2394 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2975552 2975565 . + . misc_feature unknown_2395 ; colour "6" ; note "ctaacaggataca, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2976273 2976543 . + . mRNA SPBC2D10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.05" ; systematic_id "SPBC2D10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2977166 2978584 . + . mRNA SPBC2D10.06 ; systematic_id "SPBC2D10.06" ; colour "2" ; gene "rep1 ||| rec16 ||| SPBC2D10.06" ; Alias "rep1" ; db_xref "SPD:40/40E08" ; synonym "rec16" ; GO "GO:0030907; MBF transcription complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016566; specific transcriptional repressor activity
GO:0016563; transcriptional activator activity
GO:0010674; negative regulation of transcription from RNA polymerase II promoter, meiotic
GO:0010673; positive regulation of transcription from RNA polymerase II promoter, meiotic
GO:0051037; regulation of transcription, meiotic
GO:0045896; regulation of transcription, mitotic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17927811; date=20090110 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; date=20100122" ; primary_name "rep1" ; product "MBF transcription factor complex subunit Rep1" ;
chromosome2 GeneDB CDS 2977166 2978584 . + . mRNA SPBC2D10.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 2978736 2978905 . - . mRNA SPBC2D10.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.07c" ; systematic_id "SPBC2D10.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2978906 2979469 . - . mRNA SPBC2D10.07c ; db_xref "SPD:05/05H09" ; systematic_id "SPBC2D10.07c" ; colour "7" ; GO "GO:0042720; mitochondrial inner membrane peptidase complex
GO:0004222; metalloendopeptidase activity
GO:0008236; serine-type peptidase activity
GO:0006627; mitochondrial protein processing
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR150C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC2D10.07c" ; product "mitochondrial inner membrane peptidase complex catalytic subunit (predicted)" ;
chromosome2 GeneDB CDS 2978906 2979124 . - . mRNA SPBC2D10.07c ; colour "7" ;
chromosome2 GeneDB CDS 2979172 2979298 . - . mRNA SPBC2D10.07c ; colour "7" ;
chromosome2 GeneDB CDS 2979342 2979469 . - . mRNA SPBC2D10.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 2979125 2979136 . - . misc_feature unknown_2396 ; colour "6" ; note "ctaattttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2979166 2979171 . - . misc_feature unknown_2397 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2979299 2979311 . - . misc_feature unknown_2398 ; colour "6" ; note "ctaacttaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2979336 2979341 . - . misc_feature unknown_2399 ; colour "6" ; note "gtattg, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 2979661 2980446 . - . mRNA SPBC2D10.08c ; db_xref "SPD:09/09G12" ; systematic_id "SPBC2D10.08c" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC2D10.08c" ; product "mitochondrial ribosomal protein subunit Yml6 (predicted)" ;
chromosome2 GeneDB CDS 2979661 2980446 . - . mRNA SPBC2D10.08c ; colour "7" ;
chromosome2 GeneDB CDS_parts 2981062 2982351 . + . mRNA SPBC2D10.09 ; db_xref "SPD:22/22D03" ; systematic_id "SPBC2D10.09" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0003860; 3-hydroxyisobutyryl-CoA hydrolase activity
GO:0009083; branched chain amino acid catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC2D10.09" ; product "3-hydroxyisobutyryl-CoA hydrolase (predicted)" ;
chromosome2 GeneDB CDS 2981062 2982351 . + . mRNA SPBC2D10.09 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 2982352 2982375 . + . mRNA SPBC2D10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.09" ; systematic_id "SPBC2D10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 2982420 2982763 . - . mRNA SPBC2D10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.10c" ; systematic_id "SPBC2D10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2982764 2983681 . - . mRNA SPBC2D10.10c ; systematic_id "SPBC2D10.10c" ; colour "2" ; gene "fib1 ||| fib ||| SPBC2D10.10c" ; Alias "fib1" ; db_xref "SPD:32/32B02" ; synonym "fib" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0008168; methyltransferase activity
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0000154; rRNA modification
GO:0001510; RNA methylation
GO:0003729; mRNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "fib1" ; product "fibrillarin" ;
chromosome2 GeneDB CDS 2982764 2983681 . - . mRNA SPBC2D10.10c ; colour "2" ;
chromosome2 GeneDB misc_RNA 2983907 2983962 . + . misc_RNA SPNCRNA.118 ; systematic_id "SPNCRNA.118" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.118" ; product "non-coding RNA (predicted)" ; note "putative misc RNA, short region of DNA highly conserved between c2D10" ;
chromosome2 GeneDB 3'-UTR 2984572 2984708 . - . mRNA SPBC2D10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.11c" ; systematic_id "SPBC2D10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2984709 2985848 . - . mRNA SPBC2D10.11c ; systematic_id "SPBC2D10.11c" ; colour "7" ; gene "nap2 ||| SPBC2D10.11c ||| nap12" ; Alias "nap2" ; db_xref "SPD:18/18A02" ; synonym "nap1.2 ||| nap12" ; GO "GO:0000790; nuclear chromatin
GO:0042393; histone binding
GO:0006334; nucleosome assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR048C; date=19700101 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nap2" ; product "nucleosome assembly protein Nap2 (predicted)" ;
chromosome2 GeneDB CDS 2984709 2985848 . - . mRNA SPBC2D10.11c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 2985847 2985894 . - . mRNA SPBC2D10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.11c" ; systematic_id "SPBC2D10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2986931 2986963 . + . mRNA SPBC2D10.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.12" ; systematic_id "SPBC2D10.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2986964 2988250 . + . mRNA SPBC2D10.12 ; systematic_id "SPBC2D10.12" ; colour "2" ; gene "rhp23 ||| SPBC2D10.12" ; Alias "rhp23" ; db_xref "SPD:40/40D09" ; GO "GO:0005634; nucleus
GO:0003684; damaged DNA binding
GO:0031593; polyubiquitin binding
GO:0043130; ubiquitin binding
GO:0030433; ER-associated protein catabolism
GO:0042177; negative regulation of protein catabolism
GO:0006289; nucleotide-excision repair
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YEL037C; date=19700101 ||| term=human HHR23A ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rhp23" ; product "Rad23 homolog Rhp23" ;
chromosome2 GeneDB CDS 2986964 2987032 . + . mRNA SPBC2D10.12 ; colour "2" ;
chromosome2 GeneDB CDS 2987073 2987145 . + . mRNA SPBC2D10.12 ; colour "2" ;
chromosome2 GeneDB CDS 2987187 2988028 . + . mRNA SPBC2D10.12 ; colour "2" ;
chromosome2 GeneDB CDS 2988076 2988144 . + . mRNA SPBC2D10.12 ; colour "2" ;
chromosome2 GeneDB CDS 2988197 2988250 . + . mRNA SPBC2D10.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 2987033 2987038 . + . misc_feature unknown_2400 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB intron 2987033 2987072 . + . intron SPBC2D10.12 ; systematic_id "SPBC2D10.12" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2987060 2987072 . + . misc_feature unknown_2401 ; colour "6" ; note "ctaacgtaaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2987146 2987151 . + . misc_feature unknown_2402 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB intron 2987146 2987186 . + . intron SPBC2D10.12 ; systematic_id "SPBC2D10.12" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2987176 2987186 . + . misc_feature unknown_2403 ; colour "6" ; note "ctaatttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2988029 2988034 . + . misc_feature unknown_2404 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 2988029 2988075 . + . intron SPBC2D10.12 ; systematic_id "SPBC2D10.12" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2988061 2988075 . + . misc_feature unknown_2405 ; colour "6" ; note "ctaacaagcttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2988145 2988150 . + . misc_feature unknown_2406 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome2 GeneDB intron 2988145 2988196 . + . intron SPBC2D10.12 ; systematic_id "SPBC2D10.12" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 2988184 2988196 . + . misc_feature unknown_2407 ; colour "6" ; note "ctaacaattgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2988251 2988366 . + . mRNA SPBC2D10.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.12" ; systematic_id "SPBC2D10.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 2988635 2988673 . + . mRNA SPBC2D10.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.13" ; systematic_id "SPBC2D10.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2988674 2990187 . + . mRNA SPBC2D10.13 ; systematic_id "SPBC2D10.13" ; colour "2" ; gene "est1 ||| SPBC2D10.13" ; Alias "est1" ; db_xref "SPD:24/24E07" ; GO "GO:0000781; chromosome, telomeric region
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005697; telomerase holoenzyme complex
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0043047; single-stranded telomeric DNA binding
GO:0007004; telomere maintenance via telomerase" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR206W and YLR233C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "est1" ; product "telomerase regulator Est1" ;
chromosome2 GeneDB CDS 2988674 2988925 . + . mRNA SPBC2D10.13 ; colour "2" ;
chromosome2 GeneDB CDS 2988967 2990187 . + . mRNA SPBC2D10.13 ; colour "2" ;
chromosome2 GeneDB misc_feature 2988926 2988931 . + . misc_feature unknown_2408 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2988956 2988966 . + . misc_feature unknown_2409 ; colour "6" ; note "ttaattttaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 2990294 2990304 . - . mRNA SPBC2D10.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.14c" ; systematic_id "SPBC2D10.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2990305 2994814 . - . mRNA SPBC2D10.14c ; systematic_id "SPBC2D10.14c" ; colour "2" ; gene "myo51 ||| SPBC2D10.14c" ; Alias "myo51" ; db_xref "SPD:30/30H10" ; GO "GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0000146; microfilament motor activity
GO:0016459; myosin complex
GO:0005524; ATP binding
GO:0003779; actin binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11112691; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:11112691; date=20100712 ||| term=IQ domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR326W; date=20070726 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "myo51" ; product "myosin type V" ;
chromosome2 GeneDB CDS 2990305 2990770 . - . mRNA SPBC2D10.14c ; colour "2" ;
chromosome2 GeneDB CDS 2990810 2994730 . - . mRNA SPBC2D10.14c ; colour "2" ;
chromosome2 GeneDB CDS 2994786 2994814 . - . mRNA SPBC2D10.14c ; colour "2" ;
chromosome2 GeneDB misc_feature 2990771 2990782 . - . misc_feature unknown_2410 ; colour "6" ; note "ctaacattctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2990804 2990809 . - . misc_feature unknown_2411 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2994731 2994751 . - . misc_feature unknown_2412 ; colour "6" ; note "ttaacaatcgttacaaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2994780 2994785 . - . misc_feature unknown_2413 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 2994813 2994912 . - . mRNA SPBC2D10.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.14c" ; systematic_id "SPBC2D10.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2995324 2996066 . - . mRNA SPBC2D10.15c ; systematic_id "SPBC2D10.15c" ; colour "7" ; gene "SPBC2D10.15c" ; Alias "pth1" ; db_xref "SPD:09/09A04" ; GO "GO:0004045; aminoacyl-tRNA hydrolase activity
GO:0006412; protein biosynthesis
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pth1" ; product "mitochondrial peptidyl-tRNA hydrolase Pth1 (predicted)" ; EC_number "3.1.1.29" ;
chromosome2 GeneDB CDS 2995324 2995497 . - . mRNA SPBC2D10.15c ; colour "7" ;
chromosome2 GeneDB CDS 2995534 2995579 . - . mRNA SPBC2D10.15c ; colour "7" ;
chromosome2 GeneDB CDS 2995619 2995923 . - . mRNA SPBC2D10.15c ; colour "7" ;
chromosome2 GeneDB CDS 2995971 2996066 . - . mRNA SPBC2D10.15c ; colour "7" ;
chromosome2 GeneDB misc_feature 2995580 2995592 . - . misc_feature unknown_2414 ; colour "6" ; note "ttaacattgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2995613 2995618 . - . misc_feature unknown_2415 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2995924 2995935 . - . misc_feature unknown_2416 ; colour "6" ; note "ctaatccgaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 2995965 2995970 . - . misc_feature unknown_2417 ; colour "6" ; note "gttatg, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 2996452 2996879 . + . mRNA SPBC2D10.16 ; systematic_id "SPBC2D10.16" ; colour "2" ; gene "SPBC2D10.16 ||| mhf1" ; db_xref "SPD:04/04A06" ; Alias "mhf1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL086W-A; date=20080107 ||| term=histone fold; qualifier=inferred from context; date=20080107 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20080107 ||| term=human APITD1 ortholog; db_xref=PMID:20347428; date=20100702 ||| term=disease associated, Fanconi anemia; db_xref=PMID:20347428; date=20100702" ; GO "GO:0071821; FANCM-MHF complex
GO:0003690; double-stranded DNA binding
; Rad51-dependent gene conversion at stalled replication forks
; double-strand break repair via homologous recombination
GO:0031297; replication fork processing" ; primary_name "mhf1" ; product "FANCM-MHF complex subunit Mhf1" ;
chromosome2 GeneDB CDS 2996452 2996463 . + . mRNA SPBC2D10.16 ; colour "2" ;
chromosome2 GeneDB CDS 2996509 2996687 . + . mRNA SPBC2D10.16 ; colour "2" ;
chromosome2 GeneDB CDS 2996738 2996879 . + . mRNA SPBC2D10.16 ; colour "2" ;
chromosome2 GeneDB misc_feature 2996464 2996469 . + . misc_feature unknown_2418 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 2996493 2996508 . + . misc_feature unknown_2419 ; colour "6" ; note "ctaactggtattctag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 2997113 2997237 . + . mRNA SPBC2D10.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.17" ; systematic_id "SPBC2D10.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 2997238 3000954 . + . mRNA SPBC2D10.17 ; systematic_id "SPBC2D10.17" ; colour "2" ; gene "clr1 ||| SPBC2D10.17" ; db_xref "SPD:48/48E09" ; Alias "clr1" ; GO "GO:0030466; chromatin silencing at silent mating- type cassette
GO:0016581; NuRD complex
GO:0006342; chromatin silencing
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0005721; centric heterochromatin
GO:0031933; telomeric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0033553; rDNA heterochromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=name description, cryptic loci regulator; cv=name_description; date=20100126" ; primary_name "clr1" ; product "cryptic loci regulator Clr1" ;
chromosome2 GeneDB CDS 2997238 3000954 . + . mRNA SPBC2D10.17 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3000955 3001014 . + . mRNA SPBC2D10.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.17" ; systematic_id "SPBC2D10.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3001182 3001360 . + . mRNA SPBC2D10.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.18" ; systematic_id "SPBC2D10.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3001361 3003193 . + . mRNA SPBC2D10.18 ; systematic_id "SPBC2D10.18" ; colour "2" ; gene "abc1 ||| coq8 ||| SPBC2D10.18" ; Alias "abc1" ; db_xref "SPD:33/33E04" ; synonym "coq8" ; GO "GO:0005743; mitochondrial inner membrane
GO:0016209; antioxidant activity
GO:0016301; kinase activity
GO:0019646; aerobic electron transport chain
GO:0009060; aerobic respiration
GO:0070219; cellular sulfide ion homeostasis
GO:0006119; oxidative phosphorylation
GO:0006790; sulfur metabolism
GO:0019418; sulphide oxidation
GO:0006744; ubiquinone biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL119W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, growth defect, requires antioxidant for growth; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to H202; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to copper ions; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=complementation, functionally complements S. cerevisiae COQ8; db_xref=PMID:8668131; date=20101012" ; primary_name "abc1" ; product "ABC1 kinase family ubiquinone biosynthesis protein Abc1/Coq8" ;
chromosome2 GeneDB CDS 3001361 3003193 . + . mRNA SPBC2D10.18 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3003194 3003211 . + . mRNA SPBC2D10.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.18" ; systematic_id "SPBC2D10.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3003386 3003837 . - . mRNA SPBC2D10.19c ; systematic_id "SPBC2D10.19c" ; colour "7" ; gene "SPBC2D10.19c" ; note "confirmed by est" ; db_xref "SPD:03/03H12" ; GO "GO:0042273; ribosomal large subunit biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL122W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090825 ||| term=species distribution, conserved in Fungi only; date=20090825" ; product "pre-60S shuttlingfactor (predicted)" ;
chromosome2 GeneDB CDS 3003386 3003537 . - . mRNA SPBC2D10.19c ; colour "7" ;
chromosome2 GeneDB CDS 3003618 3003669 . - . mRNA SPBC2D10.19c ; colour "7" ;
chromosome2 GeneDB CDS 3003724 3003837 . - . mRNA SPBC2D10.19c ; colour "7" ;
chromosome2 GeneDB misc_feature 3003538 3003554 . - . misc_feature unknown_2420 ; colour "6" ; note "ctaacaaacggacatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3003538 3003617 . - . intron SPBC2D10.19c ; systematic_id "SPBC2D10.19c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3003612 3003617 . - . misc_feature unknown_2421 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3003670 3003685 . - . misc_feature unknown_2422 ; colour "6" ; note "ctaaccaataatttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3003670 3003723 . - . intron SPBC2D10.19c ; systematic_id "SPBC2D10.19c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3003718 3003723 . - . misc_feature unknown_2423 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3004427 3004434 . + . mRNA SPBC2D10.20 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.20" ; systematic_id "SPBC2D10.20" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3004435 3005390 . + . mRNA SPBC2D10.20 ; systematic_id "SPBC2D10.20" ; colour "7" ; gene "ubc1 ||| SPBC2D10.20" ; Alias "ubc1" ; db_xref "SPD:13/13E05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR177W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016567; protein ubiquitination" ; primary_name "ubc1" ; product "ubiquitin conjugating enzyme Ubc1 (predicted)" ; EC_number "6.3.2.19" ;
chromosome2 GeneDB CDS 3004435 3004477 . + . mRNA SPBC2D10.20 ; colour "7" ;
chromosome2 GeneDB CDS 3004524 3004580 . + . mRNA SPBC2D10.20 ; colour "7" ;
chromosome2 GeneDB CDS 3004625 3004672 . + . mRNA SPBC2D10.20 ; colour "7" ;
chromosome2 GeneDB CDS 3004783 3004814 . + . mRNA SPBC2D10.20 ; colour "7" ;
chromosome2 GeneDB CDS 3004878 3004881 . + . mRNA SPBC2D10.20 ; colour "7" ;
chromosome2 GeneDB CDS 3004921 3005390 . + . mRNA SPBC2D10.20 ; colour "7" ;
chromosome2 GeneDB misc_feature 3004478 3004483 . + . misc_feature unknown_2424 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3004610 3004624 . + . misc_feature unknown_2425 ; colour "6" ; note "ctaatctttttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3004673 3004678 . + . misc_feature unknown_2426 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3004771 3004782 . + . misc_feature unknown_2427 ; colour "6" ; note "ctaacattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3004815 3004820 . + . misc_feature unknown_2428 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3004862 3004877 . + . misc_feature unknown_2429 ; colour "6" ; note "ctaataacataattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3004882 3004887 . + . misc_feature unknown_2430 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3004908 3004920 . + . misc_feature unknown_2431 ; colour "6" ; note "ctaattttgaaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3005391 3005469 . + . mRNA SPBC2D10.20 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2D10.20" ; systematic_id "SPBC2D10.20" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3005582 3005678 . - . mRNA SPBC15D4.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.01c" ; systematic_id "SPBC15D4.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3005679 3007753 . - . mRNA SPBC15D4.01c ; systematic_id "SPBC15D4.01c" ; colour "2" ; db_xref "SPD:40/40G11" ; Alias "klp9" ; synonym "SPBC2D10.21c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19686686; date=20090820 ||| term=kinesin family 6; db_xref=PMID:19686686; date=20090820 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:19686686; date=20090820 ||| term=target of Clp1; qualifier=dephosphorylated_by; db_xref=PMID:19686686; date=20090820 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:19686686; date=20090820 ||| term=subunit composition, homodimer; cv=subunit_composition; evidence=IDA; db_xref=PMID:19686686; date=20090820 ||| term=subunit composition, homotetrameric; cv=subunit_composition; evidence=IDA; db_xref=PMID:19686686; date=20090820 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201" ; GO "GO:0003777; microtubule motor activity
GO:0007018; microtubule-based movement
GO:0005524; ATP binding
GO:0005875; microtubule associated complex
GO:0000092; mitotic anaphase B
GO:0005515; protein binding
GO:0051233; spindle midzone
GO:0005654; nucleoplasm
GO:0051012; microtubule sliding
GO:0051231; spindle elongation
GO:0016887; ATPase activity" ; primary_name "klp9" ; product "kinesin-like protein Klp9" ;
chromosome2 GeneDB CDS 3005679 3007187 . - . mRNA SPBC15D4.01c ; colour "2" ;
chromosome2 GeneDB CDS 3007316 3007699 . - . mRNA SPBC15D4.01c ; colour "2" ;
chromosome2 GeneDB CDS 3007745 3007753 . - . mRNA SPBC15D4.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 3006691 3006796 . + . misc_feature unknown_2432 ; note "nominal overlap with cosmid SPBC2D10 and cosmid SPBC15D4" ;
chromosome2 GeneDB misc_feature 3007188 3007200 . - . misc_feature unknown_2433 ; colour "6" ; note "ctgacgattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3007310 3007315 . - . misc_feature unknown_2434 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3007700 3007712 . - . misc_feature unknown_2435 ; colour "6" ; note "ctgacaatttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3007739 3007744 . - . misc_feature unknown_2436 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3007752 3007778 . - . mRNA SPBC15D4.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.01c" ; systematic_id "SPBC15D4.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3007754 3012933 . + . misc_feature unknown_2437 ; note "low complexity gene-free region" ;
chromosome2 GeneDB CDS_parts 3013318 3014577 . + . mRNA SPBC15D4.02 ; db_xref "SPD:34/34E09" ; systematic_id "SPBC15D4.02" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding
GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, gene structure updated; qualifier=N_term; date=20031028 ||| term=warning, gene structure may be incorrect; date=20031028" ; gene "SPBC15D4.02" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome2 GeneDB CDS 3013318 3014577 . + . mRNA SPBC15D4.02 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3014578 3014990 . + . mRNA SPBC15D4.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.02" ; systematic_id "SPBC15D4.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3015483 3015537 . + . mRNA SPBC15D4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.03" ; systematic_id "SPBC15D4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3015538 3017961 . + . mRNA SPBC15D4.03 ; systematic_id "SPBC15D4.03" ; colour "2" ; gene "slm9 ||| SPBC15D4.03" ; Alias "slm9" ; db_xref "SPD:39/39F12" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0003714; transcription corepressor activity
GO:0034613; cellular protein localization
GO:0006995; cellular response to nitrogen starvation
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0000070; mitotic sister chromatid segregation
GO:0007070; negative regulation of transcription from RNA polymerase II promoter, mitotic
GO:0006336; DNA replication-independent nucleosome assembly
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10835386; date=20100708 ||| term=misc functional group, histone chaperone; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19620282; date=20091123 ||| term=target of proteasome; db_xref=PMID:20976105; evidence=IPI; date=20101124 ||| term=target of chaperonin-containing T-complex; evidence=IPI; db_xref=PMID:20976105; date=20101124" ; primary_name "slm9" ; product "hira protein Slm9" ;
chromosome2 GeneDB CDS 3015538 3017961 . + . mRNA SPBC15D4.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3017962 3018005 . + . mRNA SPBC15D4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.03" ; systematic_id "SPBC15D4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3018179 3018243 . + . mRNA SPBC15D4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.04" ; systematic_id "SPBC15D4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3018244 3019584 . + . mRNA SPBC15D4.04 ; systematic_id "SPBC15D4.04" ; colour "2" ; gene "gpt2 ||| gpt ||| alg7 ||| SPBC15D4.04" ; Alias "gpt2" ; db_xref "SPD:32/32H04" ; synonym "gpt ||| alg7" ; GO "GO:0003975; UDP-N-acetylglucosamine-dolichyl- phosphate N-acetylglucosaminephosphotransferase activity
GO:0003975; UDP-N-acetylglucosamine-dolichyl- phosphate N-acetylglucosaminephosphotransferase activity
GO:0005783; endoplasmic reticulum
GO:0006487; protein amino acid N-linked glycosylation
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR243C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gpt2" ; product "UDP-N-acetylglucosamine--dolichyl-phosphateN-acetylglucosaminephosphotransferase" ; EC_number "2.7.8.15" ;
chromosome2 GeneDB CDS 3018244 3019584 . + . mRNA SPBC15D4.04 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3019585 3019939 . + . mRNA SPBC15D4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.04" ; systematic_id "SPBC15D4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snRNA 3019819 3020472 . + . snRNA SPSNRNA.01 ; Alias "snu1" ; db_xref "RFAM:RF00003" ; systematic_id "SPSNRNA.01" ; primary_name "snu1" ; gene "snu1 ||| SPSNRNA.01" ; product "small nuclear RNA U1" ;
chromosome2 GeneDB 5'-UTR 3020757 3020852 . + . mRNA SPBC15D4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.05" ; systematic_id "SPBC15D4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3020853 3022088 . + . mRNA SPBC15D4.05 ; db_xref "SPD:19/19G03" ; systematic_id "SPBC15D4.05" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CBWD1 and CBWD2 and CBWD3 ortholog; date=20100728" ; gene "SPBC15D4.05" ; product "conserved CobW/HypB/UreG nucleotide binding domain protein (predicted)" ;
chromosome2 GeneDB CDS 3020853 3022088 . + . mRNA SPBC15D4.05 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3022405 3022432 . + . mRNA SPBC15D4.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.06" ; systematic_id "SPBC15D4.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3022433 3022973 . + . mRNA SPBC15D4.06 ; systematic_id "SPBC15D4.06" ; colour "7" ; gene "SPBC15D4.06" ; Alias "naa30" ; db_xref "SPD:42/42C07" ; synonym "mak3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; GO "GO:0004596; peptide alpha-N-acetyltransferase activity
GO:0031417; NatC complex
GO:0017196; N-terminal peptidyl-methionine acetylation" ; primary_name "naa30" ; product "NatC N-acetyltransferase complex catalytic subunit Naa30 (predicted)" ;
chromosome2 GeneDB CDS 3022433 3022548 . + . mRNA SPBC15D4.06 ; colour "7" ;
chromosome2 GeneDB CDS 3022637 3022973 . + . mRNA SPBC15D4.06 ; colour "7" ;
chromosome2 GeneDB misc_feature 3022549 3022554 . + . misc_feature unknown_2438 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3022623 3022636 . + . misc_feature unknown_2439 ; colour "6" ; note "ctgacagattaaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3022974 3023010 . + . mRNA SPBC15D4.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.06" ; systematic_id "SPBC15D4.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3023343 3023512 . - . mRNA SPBC15D4.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.07c" ; systematic_id "SPBC15D4.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3023513 3025621 . - . mRNA SPBC15D4.07c ; systematic_id "SPBC15D4.07c" ; colour "2" ; gene "atg9 ||| apg9 ||| SPBC15D4.07c" ; Alias "atg9" ; db_xref "SPD:27/27H08" ; synonym "apg9" ; GO "GO:0005737; cytoplasm
GO:0016021; integral to membrane
GO:0032258; CVT pathway
GO:0000045; autophagic vacuole formation
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL149W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atg9" ; product "autophagy associated protein Atg9" ;
chromosome2 GeneDB CDS 3023513 3025621 . - . mRNA SPBC15D4.07c ; colour "2" ;
chromosome2 GeneDB CDS_parts 3025659 3026075 . - . mRNA SPBC15D4.08c ; db_xref "SPD:03/03C10" ; systematic_id "SPBC15D4.08c" ; colour "6" ; gene "SPBC15D4.08c" ; product "dubious" ;
chromosome2 GeneDB CDS 3025659 3026075 . - . mRNA SPBC15D4.08c ; colour "6" ;
chromosome2 GeneDB 3'-UTR 3026425 3026440 . - . mRNA SPBC15D4.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.09c" ; systematic_id "SPBC15D4.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3026441 3028273 . - . mRNA SPBC15D4.09c ; systematic_id "SPBC15D4.09c" ; colour "7" ; gene "SPBC15D4.09c" ; note "candidate for met3, but not proven experimentally; pers. comm. Juerg Kohli" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00271; ||| KEGG:MAP00272; ||| KEGG:MAP00450; ||| KEGG:MAP00920; ||| SPD:36/36G02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR130C and YML082W and YLL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003962; cystathionine gamma-synthase activity
GO:0006534; cysteine metabolism
GO:0019281; methionine biosynthesis from homoserine via O-succinyl-L-homoserine and cystathione" ; product "cystathionine gamma-synthase (predicted)" ; EC_number "2.5.1.48" ; reserved_name "met3" ;
chromosome2 GeneDB CDS 3026441 3028273 . - . mRNA SPBC15D4.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3028272 3028353 . - . mRNA SPBC15D4.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.09c" ; systematic_id "SPBC15D4.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3028685 3028704 . - . mRNA SPBC15D4.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.10c" ; systematic_id "SPBC15D4.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3028705 3030192 . - . mRNA SPBC15D4.10c ; systematic_id "SPBC15D4.10c" ; colour "2" ; gene "amo1 ||| SPBC15D4.10c" ; Alias "amo1" ; db_xref "SPD:24/24A05" ; GO "GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0005816; spindle pole body
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0030951; establishment and/or maintenance of microtubule cytoskeleton polarity
GO:0040023; establishment of nucleus localization
GO:0031115; negative regulation of microtubule polymerization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, curved; db_xref=PMID:15797925; date=20100731 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Aberrent Microtubules when Overexpressed; cv=name_description; db_xref=PMID:15797925; date=20091107 ||| term=human NUPL2 ortholog; date=20091118" ; primary_name "amo1" ; product "nuclear rim protein Amo1" ;
chromosome2 GeneDB CDS 3028705 3028877 . - . mRNA SPBC15D4.10c ; colour "2" ;
chromosome2 GeneDB CDS 3028938 3030192 . - . mRNA SPBC15D4.10c ; colour "2" ;
chromosome2 GeneDB misc_feature 3028878 3028894 . - . misc_feature unknown_2440 ; colour "6" ; note "ctaacgatcatcgacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3028932 3028937 . - . misc_feature unknown_2441 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3030193 3030224 . - . mRNA SPBC15D4.10c ; ID "SPBC15D4.10c" ; systematic_id "SPBC15D4.10c" ; note "mRNA from AU013326" ;
chromosome2 GeneDB CDS_parts 3030371 3031341 . - . mRNA SPBC15D4.11c ; db_xref "SPD:13/13H01" ; systematic_id "SPBC15D4.11c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20091022 ||| term=species distribution, conserved in Metazoa; date=20091022 ||| term=species distribution, conserved in Fungi; date=20091022 ||| term=species distribution, conserved in Vertebrates; date=20091022 ||| term=species distribution, conserved in Eukaryotes only; date=20091022 ||| term=orthologous to S. cerevisiae YIL070C; date=20091022" ; gene "SPBC15D4.11c" ; product "mitochondrial Mam33 family protein (predicted)" ; note "low similarity to mitochondrial glycoprotein mam33 family" ;
chromosome2 GeneDB CDS 3030371 3030721 . - . mRNA SPBC15D4.11c ; colour "7" ;
chromosome2 GeneDB CDS 3030760 3030913 . - . mRNA SPBC15D4.11c ; colour "7" ;
chromosome2 GeneDB CDS 3031055 3031341 . - . mRNA SPBC15D4.11c ; colour "7" ;
chromosome2 GeneDB misc_feature 3030722 3030734 . - . misc_feature unknown_2442 ; colour "6" ; note "cttacaattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3030754 3030759 . - . misc_feature unknown_2443 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3030914 3030926 . - . misc_feature unknown_2444 ; colour "6" ; note "ctaacgtagctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3031049 3031054 . - . misc_feature unknown_2445 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3031340 3031431 . - . mRNA SPBC15D4.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.11c" ; systematic_id "SPBC15D4.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3031750 3032129 . - . mRNA SPBC15D4.12c ; systematic_id "SPBC15D4.12c" ; colour "8" ; gene "SPBC15D4.12c ||| mug98" ; note "possibly merged to SPBC15D4.13c but can't identify correct splicing" ; Alias "mug98" ; db_xref "SPD:02/02G07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug98" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3031750 3032057 . - . mRNA SPBC15D4.12c ; colour "8" ;
chromosome2 GeneDB CDS 3032096 3032129 . - . mRNA SPBC15D4.12c ; colour "8" ;
chromosome2 GeneDB misc_feature 3032058 3032068 . - . misc_feature unknown_2446 ; colour "6" ; note "ttaattattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3032090 3032095 . - . misc_feature unknown_2447 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 3032162 3032202 . - . intron unknown_2448 ; note "confirmed intron" ;
chromosome2 GeneDB CDS_parts 3032492 3033222 . - . mRNA SPBC15D4.13c ; db_xref "SPD:08/08G04" ; systematic_id "SPBC15D4.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human ASCC1 ortholog; date=20080925 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080925 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006350; transcription" ; colour "7" ; gene "SPBC15D4.13c" ; product "human ASCC1 ortholog (predicted)" ;
chromosome2 GeneDB CDS 3032492 3032710 . - . mRNA SPBC15D4.13c ; colour "7" ;
chromosome2 GeneDB CDS 3032761 3032822 . - . mRNA SPBC15D4.13c ; colour "7" ;
chromosome2 GeneDB CDS 3032889 3033222 . - . mRNA SPBC15D4.13c ; colour "7" ;
chromosome2 GeneDB misc_feature 3032711 3032723 . - . misc_feature unknown_2449 ; colour "6" ; note "ctaacaaaactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3032755 3032760 . - . misc_feature unknown_2450 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3032823 3032833 . - . misc_feature unknown_2451 ; colour "6" ; note "ctaattcatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3032859 3032864 . - . misc_feature unknown_2452 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3033736 3033880 . + . mRNA SPBC15D4.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.14" ; systematic_id "SPBC15D4.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3033881 3035865 . + . mRNA SPBC15D4.14 ; systematic_id "SPBC15D4.14" ; colour "2" ; gene "taf73 ||| SPBC15D4.14 ||| taf5" ; Alias "taf73" ; db_xref "SPD:46/46C03" ; synonym "taf5l ||| taf5" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016986; transcription initiation factor activity
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0006367; transcription initiation from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11279037; date=19700101 ||| term=orthologous to S. cerevisiae YBR198C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "taf73" ; product "transcription factor TFIID complex subunit Taf5- like" ;
chromosome2 GeneDB CDS 3033881 3035353 . + . mRNA SPBC15D4.14 ; colour "2" ;
chromosome2 GeneDB CDS 3035410 3035865 . + . mRNA SPBC15D4.14 ; colour "2" ;
chromosome2 GeneDB misc_feature 3035354 3035359 . + . misc_feature unknown_2453 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB intron 3035354 3035409 . + . intron SPBC15D4.14 ; systematic_id "SPBC15D4.14" ; note "this intron has consensus sequences for splicing; identified by a comparison with our unpublished cDNA sequences -Mitsuzawa H. et al" ;
chromosome2 GeneDB misc_feature 3035395 3035409 . + . misc_feature unknown_2454 ; colour "6" ; note "ctaaccttgatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3035866 3035888 . + . mRNA SPBC15D4.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.14" ; systematic_id "SPBC15D4.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3036101 3036127 . + . mRNA SPBC15D4.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC15D4.15" ; systematic_id "SPBC15D4.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3036128 3037110 . + . mRNA SPBC15D4.15 ; systematic_id "SPBC15D4.15" ; colour "2" ; gene "pho2 ||| SPBC15D4.15" ; Alias "pho2" ; db_xref "SPD:40/40B11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL236W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:1645660; date=20090418" ; GO "GO:0003869; 4-nitrophenylphosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0004035; alkaline phosphatase activity
GO:0006796; phosphate metabolic process" ; primary_name "pho2" ; product "4-nitrophenylphosphatase" ; EC_number "3.1.3.41" ;
chromosome2 GeneDB CDS 3036128 3036206 . + . mRNA SPBC15D4.15 ; colour "2" ;
chromosome2 GeneDB CDS 3036254 3036322 . + . mRNA SPBC15D4.15 ; colour "2" ;
chromosome2 GeneDB CDS 3036362 3037110 . + . mRNA SPBC15D4.15 ; colour "2" ;
chromosome2 GeneDB misc_feature 3036207 3036212 . + . misc_feature unknown_2455 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3036243 3036253 . + . misc_feature unknown_2456 ; colour "6" ; note "ctaacacgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3036323 3036328 . + . misc_feature unknown_2457 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3036347 3036361 . + . misc_feature unknown_2458 ; colour "6" ; note "ttaactcttttacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3037111 3037146 . + . mRNA SPBC15D4.15 ; ID "SPBC15D4.15" ; systematic_id "SPBC15D4.15" ; note "mRNA from AU008358" ;
chromosome2 GeneDB 5'-UTR 3037917 3037987 . + . mRNA SPBC13E7.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.01" ; systematic_id "SPBC13E7.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3037988 3040650 . + . mRNA SPBC13E7.01 ; systematic_id "SPBC13E7.01" ; colour "2" ; gene "cwf22 ||| SPBC15D4.16 ||| SPBC13E7.01" ; Alias "cwf22" ; db_xref "SPD:29/29B01" ; synonym "SPBC15D4.16" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YGR278W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=warning, frameshifted; residue=base 2345; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cwf22" ; product "splicing factor Cwf22" ;
chromosome2 GeneDB CDS 3037988 3040331 . + . mRNA SPBC13E7.01 ; colour "2" ;
chromosome2 GeneDB CDS 3040334 3040650 . + . mRNA SPBC13E7.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 3039671 3039870 . + . misc_feature unknown_2459 ; note "nominal overlap with cosmid SPBC13E7 and Scosmid PBC15D4" ;
chromosome2 GeneDB 3'-UTR 3040651 3040813 . + . mRNA SPBC13E7.01 ; ID "SPBC13E7.01" ; systematic_id "SPBC13E7.01" ; note "mRNA from SPD100" ;
chromosome2 GeneDB 5'-UTR 3041498 3041801 . + . mRNA SPBC13E7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.02" ; systematic_id "SPBC13E7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3041802 3043403 . + . mRNA SPBC13E7.02 ; systematic_id "SPBC13E7.02" ; colour "2" ; gene "cwf24 ||| SPBC13E7.02" ; note "domain combination does not usually co-occur, check sequence" ; Alias "cwf24" ; db_xref "SPD:45/45C09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YLR323C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008080; N-acetyltransferase activity
GO:0005681; spliceosome complex
GO:0004842; ubiquitin-protein ligase activity
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0016074; snoRNA metabolic biogenesis" ; primary_name "cwf24" ; product "zf-C3HC4 type (RING finger)/GCN5-related N acetyltransferase fusion protein" ;
chromosome2 GeneDB CDS 3041802 3043403 . + . mRNA SPBC13E7.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3042978 3043624 . - . mRNA SPBC13E7.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.03c" ; systematic_id "SPBC13E7.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3043625 3045766 . - . mRNA SPBC13E7.03c ; db_xref "SPD:37/37E09" ; systematic_id "SPBC13E7.03c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR359W; date=19700101 ||| term=Smaug family; date=20080714 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005829; cytosol
GO:0003723; RNA binding
GO:0000289; nuclear-transcribed mRNA poly(A) tail shortening" ; gene "SPBC13E7.03c" ; product "RNA hairpin binding protein (predicted)" ;
chromosome2 GeneDB CDS 3043625 3045766 . - . mRNA SPBC13E7.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3045765 3046004 . - . mRNA SPBC13E7.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.03c" ; systematic_id "SPBC13E7.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3046833 3046872 . + . mRNA SPBC13E7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.04" ; systematic_id "SPBC13E7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3046873 3047355 . + . mRNA SPBC13E7.04 ; systematic_id "SPBC13E7.04" ; colour "7" ; gene "atp16 ||| SPBC13E7.04" ; Alias "atp16" ; db_xref "SPD:04/04E02" ; GO "GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0005756; proton-transporting ATP synthase, central stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp16" ; product "F1-ATPase delta subunit (predicted)" ;
chromosome2 GeneDB CDS 3046873 3047355 . + . mRNA SPBC13E7.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3047356 3047540 . + . mRNA SPBC13E7.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.04" ; systematic_id "SPBC13E7.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3047927 3047979 . + . mRNA SPBC13E7.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.05" ; systematic_id "SPBC13E7.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3047980 3050477 . + . mRNA SPBC13E7.05 ; systematic_id "SPBC13E7.05" ; colour "7" ; gene "gpi14 ||| SPBC13E7.05" ; Alias "gpi14" ; db_xref "SPD:46/46H09" ; GO "GO:0035268; protein amino acid mannosylation
GO:0005789; endoplasmic reticulum membrane
GO:0006506; GPI anchor biosynthesis
GO:0000030; mannosyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure may be incorrect; date=20100731" ; primary_name "gpi14" ; product "pig-M (predicted)" ;
chromosome2 GeneDB CDS 3047980 3050193 . + . mRNA SPBC13E7.05 ; colour "7" ;
chromosome2 GeneDB CDS 3050244 3050477 . + . mRNA SPBC13E7.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 3050194 3050199 . + . misc_feature unknown_2460 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3050232 3050243 . + . misc_feature unknown_2461 ; colour "6" ; note "ctaacaacttag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 3050572 3050579 . + . mRNA SPBC13E7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.06" ; systematic_id "SPBC13E7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3050580 3051575 . + . mRNA SPBC13E7.06 ; systematic_id "SPBC13E7.06" ; colour "2" ; gene "SPBC13E7.06 ||| msd1 ||| mug172" ; Alias "msd1" ; db_xref "SPD:14/14E09" ; synonym "mug172" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0034631; microtubule anchoring at spindle pole body
GO:0031577; spindle checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Mitotic Spindle Disanchored; cv=name_description; date=20070329 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "msd1" ; product "mitotic-spindle disanchored Msd1" ;
chromosome2 GeneDB CDS 3050580 3051575 . + . mRNA SPBC13E7.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3051576 3051671 . + . mRNA SPBC13E7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.06" ; systematic_id "SPBC13E7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3052500 3052510 . + . mRNA SPBC13E7.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.07" ; systematic_id "SPBC13E7.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3052511 3053332 . + . mRNA SPBC13E7.07 ; db_xref "SPD:10/10F04" ; systematic_id "SPBC13E7.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC13E7.07" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3052511 3053332 . + . mRNA SPBC13E7.07 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 3053333 3053542 . + . mRNA SPBC13E7.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.07" ; systematic_id "SPBC13E7.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3053595 3053604 . - . mRNA SPBC13E7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.08c" ; systematic_id "SPBC13E7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3053605 3055084 . - . mRNA SPBC13E7.08c ; db_xref "SPD:44/44G11" ; systematic_id "SPBC13E7.08c" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0016593; Cdc73/Paf1 complex
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR123C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC13E7.08c" ; product "RNA polymerase II associated Paf1 complex (predicted)" ;
chromosome2 GeneDB CDS 3053605 3054703 . - . mRNA SPBC13E7.08c ; colour "7" ;
chromosome2 GeneDB CDS 3054894 3055084 . - . mRNA SPBC13E7.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 3054704 3054717 . - . misc_feature unknown_2462 ; colour "6" ; note "ctaacaaatgttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3054888 3054893 . - . misc_feature unknown_2463 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3055083 3055131 . - . mRNA SPBC13E7.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.08c" ; systematic_id "SPBC13E7.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3055411 3055474 . + . mRNA SPBC13E7.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.09" ; systematic_id "SPBC13E7.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3055475 3056456 . + . mRNA SPBC13E7.09 ; systematic_id "SPBC13E7.09" ; colour "2" ; gene "vrp1 ||| SPBC13E7.09" ; Alias "vrp1" ; db_xref "SPD:14/14B09" ; GO "GO:0030479; actin cortical patch
GO:0051286; cell tip
GO:0031097; medial ring
GO:0003779; actin binding
GO:0005515; protein binding
GO:0000147; actin cortical patch assembly
GO:0007015; actin filament organization
GO:0051127; positive regulation of actin nucleation
GO:0045010; actin nucleation
GO:0045010; actin nucleation
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Wiskott- Aldrich syndrome; date=20060809 ||| term=orthologous to S. cerevisiae YLR337C; date=19700101 ||| term=human WIPF1 and WIPF2 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vrp1" ; product "verprolin" ;
chromosome2 GeneDB CDS 3055475 3056273 . + . mRNA SPBC13E7.09 ; colour "2" ;
chromosome2 GeneDB CDS 3056326 3056456 . + . mRNA SPBC13E7.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 3056274 3056279 . + . misc_feature unknown_2464 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3056309 3056325 . + . misc_feature unknown_2465 ; colour "6" ; note "ttaacacaaaactctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3056457 3056566 . + . mRNA SPBC13E7.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.09" ; systematic_id "SPBC13E7.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3056734 3056759 . - . mRNA SPBC13E7.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13E7.10c" ; systematic_id "SPBC13E7.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3056760 3058589 . - . mRNA SPBC13E7.10c ; systematic_id "SPBC13E7.10c" ; colour "2" ; gene "brf1 ||| SPBC13E7.10c ||| SPBC30D10.20" ; Alias "brf1" ; db_xref "SPD:40/40G02" ; synonym "SPBC30D10.20" ; GO "GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0000126; transcription factor TFIIIB complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR246C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "brf1" ; product "transcription factor TFIIIB complex subunit Brf1" ;
chromosome2 GeneDB CDS 3056760 3058060 . - . mRNA SPBC13E7.10c ; colour "2" ;
chromosome2 GeneDB CDS 3058218 3058330 . - . mRNA SPBC13E7.10c ; colour "2" ;
chromosome2 GeneDB CDS 3058392 3058474 . - . mRNA SPBC13E7.10c ; colour "2" ;
chromosome2 GeneDB CDS 3058584 3058589 . - . mRNA SPBC13E7.10c ; colour "2" ;
chromosome2 GeneDB misc_feature 3058061 3058075 . - . misc_feature unknown_2466 ; colour "6" ; note "ctaacacagctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3058212 3058217 . - . misc_feature unknown_2467 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3058221 3059670 . + . misc_feature unknown_2468 ; note "nominal overlap with cosmid SPBC30D10 and cosmid SPBC13E7" ;
chromosome2 GeneDB misc_feature 3058228 3058233 . - . misc_feature unknown_2469 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3058331 3058345 . - . misc_feature unknown_2470 ; colour "6" ; note "ctaaccattgaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3058386 3058391 . - . misc_feature unknown_2471 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3058475 3058486 . - . misc_feature unknown_2472 ; colour "6" ; note "ctaacgcccaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3058578 3058583 . - . misc_feature unknown_2473 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 3059132 3060028 . + . mRNA SPBC13E7.11 ; systematic_id "SPBC13E7.11" ; colour "7" ; gene "SPBC30D10.19c ||| SPBC13E7.11" ; Alias "SPBC30D10.19c" ; db_xref "SPD:12/12C05" ; synonym "SPBC30D10.19c" ; GO "GO:0005739; mitochondrion
GO:0008233; peptidase activity
GO:0007005; mitochondrion organization and biogenesis
GO:0045041; protein import into mitochondrial intermembrane space
GO:0006465; signal peptide processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR101W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC30D10.19c" ; product "mitochondrial rhomboid protease (predicted)" ;
chromosome2 GeneDB CDS 3059132 3060028 . + . mRNA SPBC13E7.11 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3060029 3060237 . + . mRNA SPBC13E7.11 ; ID "SPBC13E7.11" ; systematic_id "SPBC13E7.11" ; note "mRNA from AU007356" ;
chromosome2 GeneDB promoter 3060492 3060499 . + . promoter unknown_2474 ; colour "4" ; note "Homol D box" ;
chromosome2 GeneDB CDS_parts 3060570 3061481 . + . mRNA SPBC30D10.18c ; systematic_id "SPBC30D10.18c" ; colour "2" ; gene "rpl102 ||| rpl1-2 ||| rpl10a-2 ||| SPBC30D10.18c" ; Alias "rpl102" ; db_xref "SPD:32/32A12" ; synonym "rpl1-2 ||| rpl10a-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL220W and YGL135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "rpl102" ; product "60S ribosomal protein L10a" ;
chromosome2 GeneDB CDS 3060570 3060957 . + . mRNA SPBC30D10.18c ; colour "2" ;
chromosome2 GeneDB CDS 3061219 3061481 . + . mRNA SPBC30D10.18c ; colour "2" ;
chromosome2 GeneDB misc_feature 3060958 3060963 . + . misc_feature unknown_2475 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 3060958 3061218 . + . intron SPBC30D10.18c ; systematic_id "SPBC30D10.18c" ; note "confirmed" ;
chromosome2 GeneDB misc_feature 3061201 3061218 . + . misc_feature unknown_2476 ; colour "6" ; note "ctaactcgatggctatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3061482 3061515 . + . mRNA SPBC30D10.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.18c" ; systematic_id "SPBC30D10.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3062064 3062312 . + . mRNA SPBC30D10.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.17c" ; systematic_id "SPBC30D10.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3062313 3063827 . + . mRNA SPBC30D10.17c ; systematic_id "SPBC30D10.17c" ; colour "7" ; gene "smi1 ||| SPBC30D10.17c" ; note "not glucan synthase EC 2.4.1.34 as reported in SW:GS1_NEUCR" ; Alias "smi1" ; db_xref "SPD:24/24E11" ; GO "GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0007346; regulation of mitotic cell cycle
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR229C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "smi1" ; product "cell wall biosynthesis/ cell cycle regulator (predicted)" ;
chromosome2 GeneDB CDS 3062313 3063827 . + . mRNA SPBC30D10.17c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3063828 3063902 . + . mRNA SPBC30D10.17c ; ID "SPBC30D10.17c" ; systematic_id "SPBC30D10.17c" ; note "mRNA from AU008160" ;
chromosome2 GeneDB 3'-UTR 3063942 3064222 . - . mRNA SPBC30D10.16 ; ID "SPBC30D10.16" ; systematic_id "SPBC30D10.16" ; note "mRNA from AU011330" ;
chromosome2 GeneDB CDS_parts 3064223 3065231 . - . mRNA SPBC30D10.16 ; systematic_id "SPBC30D10.16" ; colour "2" ; gene "SPBC30D10.16 ||| pha2" ; note "splicing possibly incorrectly predicted" ; Alias "pha2" ; db_xref "SPD:14/14H12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for phenylalanine; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=orthologous to S. cerevisiae YNL316C; date=19700101 ||| term=experimental tools, selectable marker, amino acid auxotroph; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0005737; cytoplasm
GO:0004664; prephenate dehydratase activity
GO:0009094; L-phenylalanine biosynthetic process" ; primary_name "pha2" ; product "phrenate dehydratase" ; EC_number "4.2.1.51" ;
chromosome2 GeneDB CDS 3064223 3065032 . - . mRNA SPBC30D10.16 ; colour "2" ;
chromosome2 GeneDB CDS 3065178 3065231 . - . mRNA SPBC30D10.16 ; colour "2" ;
chromosome2 GeneDB misc_feature 3065033 3065048 . - . misc_feature unknown_2477 ; colour "6" ; note "gtaacaaatataatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3065172 3065177 . - . misc_feature unknown_2478 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3065230 3065370 . - . mRNA SPBC30D10.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.16" ; systematic_id "SPBC30D10.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3065905 3065946 . - . mRNA SPBC30D10.15 ; ID "SPBC30D10.15" ; systematic_id "SPBC30D10.15" ; note "mRNA from spc00255" ;
chromosome2 GeneDB CDS_parts 3065947 3067497 . - . mRNA SPBC30D10.15 ; db_xref "SPD:25/25B07" ; systematic_id "SPBC30D10.15" ; colour "7" ; GO "GO:0005654; nucleoplasm
GO:0003723; RNA binding
GO:0000493; box H/ACA snoRNP assembly
GO:0006364; rRNA processing" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL124W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC30D10.15" ; product "snoRNP assembly factor Naf1 (predicted)" ;
chromosome2 GeneDB CDS 3065947 3067497 . - . mRNA SPBC30D10.15 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3067496 3067507 . - . mRNA SPBC30D10.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.15" ; systematic_id "SPBC30D10.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3067955 3067995 . - . mRNA SPBC30D10.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.14" ; systematic_id "SPBC30D10.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3067996 3068745 . - . mRNA SPBC30D10.14 ; db_xref "SPD:09/09B12" ; systematic_id "SPBC30D10.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL049C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPBC30D10.14" ; product "dienelactone hydrolase family (predicted)" ;
chromosome2 GeneDB CDS 3067996 3068745 . - . mRNA SPBC30D10.14 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3068744 3068774 . - . mRNA SPBC30D10.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.14" ; systematic_id "SPBC30D10.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3070485 3070542 . + . mRNA SPBC30D10.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.13c" ; systematic_id "SPBC30D10.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3070543 3071643 . + . mRNA SPBC30D10.13c ; systematic_id "SPBC30D10.13c" ; colour "2" ; gene "pdb1 ||| SPBC30D10.13c" ; Alias "pdb1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00290; ||| KEGG:MAP00620; ||| KEGG:MAP00650; ||| SPD:39/39E10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR221C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006086; acetyl-CoA biosynthesis from pyruvate
GO:0004739; pyruvate dehydrogenase (acetyl- transferring) activity
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)" ; primary_name "pdb1" ; product "pyruvate dehydrogenase e1 component beta subunit Pdb1" ; EC_number "1.2.4.1" ;
chromosome2 GeneDB CDS 3070543 3071643 . + . mRNA SPBC30D10.13c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3071644 3071908 . + . mRNA SPBC30D10.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.13c" ; systematic_id "SPBC30D10.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3072290 3072393 . + . mRNA SPBC30D10.12c ; ID "SPBC30D10.12c" ; systematic_id "SPBC30D10.12c" ; note "mRNA from AU007689" ;
chromosome2 GeneDB CDS_parts 3072394 3072793 . + . mRNA SPBC30D10.12c ; systematic_id "SPBC30D10.12c" ; colour "7" ; gene "SPBC30D10.12c ||| rsm27" ; Alias "rsm27" ; db_xref "SPD:03/03A10" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR215W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rsm27" ; product "mitochondrial ribosomal protein subunit S27 (predicted)" ;
chromosome2 GeneDB CDS 3072394 3072629 . + . mRNA SPBC30D10.12c ; colour "7" ;
chromosome2 GeneDB CDS 3072695 3072732 . + . mRNA SPBC30D10.12c ; colour "7" ;
chromosome2 GeneDB CDS 3072786 3072793 . + . mRNA SPBC30D10.12c ; colour "7" ;
chromosome2 GeneDB misc_feature 3072630 3072635 . + . misc_feature unknown_2479 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3072679 3072694 . + . misc_feature unknown_2480 ; colour "6" ; note "ctaattaaaatactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3072733 3072738 . + . misc_feature unknown_2481 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3072771 3072785 . + . misc_feature unknown_2482 ; colour "6" ; note "ctaactcctgtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3072909 3072987 . - . mRNA SPBC30D10.11 ; ID "SPBC30D10.11" ; systematic_id "SPBC30D10.11" ; note "mRNA from SPU77355" ;
chromosome2 GeneDB CDS_parts 3072988 3074949 . - . mRNA SPBC30D10.11 ; systematic_id "SPBC30D10.11" ; colour "2" ; gene "gpi1 ||| SPBC30D10.11" ; Alias "gpi1" ; db_xref "SPD:40/40G07" ; GO "GO:0033205; cell cycle cytokinesis
GO:0006506; GPI anchor biosynthesis
GO:0000506; glycosylphosphatidylinositol-N- acetylglucosaminyltransferase (GPI-GnT) complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9046095; date=19700101 ||| term=orthologous to S. cerevisiae YGR216C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gpi1" ; product "pig-Q" ;
chromosome2 GeneDB CDS 3072988 3074949 . - . mRNA SPBC30D10.11 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3074950 3075410 . - . mRNA SPBC30D10.11 ; ID "SPBC30D10.11" ; systematic_id "SPBC30D10.11" ; note "mRNA from SPU77355" ;
chromosome2 GeneDB 5'-UTR 3075759 3075960 . + . mRNA SPBC30D10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.10c" ; systematic_id "SPBC30D10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3075961 3082968 . + . mRNA SPBC30D10.10c ; systematic_id "SPBC30D10.10c" ; colour "2" ; gene "tor1 ||| SPBC30D10.10c" ; Alias "tor1" ; db_xref "SPD:48/48H11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to rapamycin; allele=leucine_auxotroph; db_xref=PMID:15466417; cv=phenotype; date=20091126 ||| term=orthologous to S. cerevisiae YJR066W and YKL203C; date=19700101 ||| term=phosphoinositide 3-kinase family protein; db_xref=GOC:unpublished; date=20071228 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0031932; TORC 2 complex
GO:0031932; TORC 2 complex
GO:0016303; phosphatidylinositol 3-kinase activity
GO:0035004; phosphoinositide 3-kinase activity
GO:0043091; L-arginine import
GO:0031929; TOR signaling pathway
GO:0007569; cell aging
GO:0006995; cellular response to nitrogen starvation
GO:0009267; cellular response to starvation
GO:0033554; cellular response to stress
GO:0033554; cellular response to stress
GO:0031142; induction of conjugation in response to nitrogen starvation
GO:0048015; phosphoinositide-mediated signaling
GO:0031139; positive regulation of conjugation with cellular fusion
GO:0060357; regulation leucine import
GO:0031137; regulation of conjugation with cellular fusion
GO:0006970; response to osmotic stress
GO:0009266; response to temperature stimulus" ; primary_name "tor1" ; product "phosphatidylinositol kinase Tor1" ; EC_number "2.7.1.137" ;
chromosome2 GeneDB CDS 3075961 3082968 . + . mRNA SPBC30D10.10c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3082969 3083079 . + . mRNA SPBC30D10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.10c" ; systematic_id "SPBC30D10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3083317 3084106 . + . mRNA SPBC30D10.09c ; db_xref "SPD:10/10A04" ; systematic_id "SPBC30D10.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBC30D10.09c" ; product "HVA22/TB2/DP1 family protein" ;
chromosome2 GeneDB CDS 3083317 3083483 . + . mRNA SPBC30D10.09c ; colour "10" ;
chromosome2 GeneDB CDS 3083527 3083648 . + . mRNA SPBC30D10.09c ; colour "10" ;
chromosome2 GeneDB CDS 3083742 3084106 . + . mRNA SPBC30D10.09c ; colour "10" ;
chromosome2 GeneDB misc_feature 3083484 3083489 . + . misc_feature unknown_2483 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3083510 3083526 . + . misc_feature unknown_2484 ; colour "6" ; note "ctaacgcattttaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3083649 3083654 . + . misc_feature unknown_2485 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3083727 3083741 . + . misc_feature unknown_2486 ; colour "6" ; note "ataacatttgtacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3084107 3084348 . + . mRNA SPBC30D10.09c ; ID "SPBC30D10.09c" ; systematic_id "SPBC30D10.09c" ; note "mRNA from spc03245 472 8" ;
chromosome2 GeneDB 3'-UTR 3084397 3084533 . - . mRNA SPBC30D10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.08" ; systematic_id "SPBC30D10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3084534 3085337 . - . mRNA SPBC30D10.08 ; systematic_id "SPBC30D10.08" ; colour "7" ; gene "SPBC30D10.08 ||| mgm101" ; Alias "mgm101" ; db_xref "SPD:43/43C09" ; GO "GO:0000262; mitochondrial chromosome
GO:0003677; DNA binding
GO:0006281; DNA repair
GO:0000002; mitochondrial genome maintenance
GO:0043504; mitochondrial DNA repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=orthologous to S. cerevisiae YJR144W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; primary_name "mgm101" ; product "mitochondrial DNA repair protein (predicted)" ;
chromosome2 GeneDB CDS 3084534 3085337 . - . mRNA SPBC30D10.08 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3085985 3086127 . + . mRNA SPBC30D10.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.07c" ; systematic_id "SPBC30D10.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3086128 3088023 . + . mRNA SPBC30D10.07c ; db_xref "SPD:46/46A11" ; systematic_id "SPBC30D10.07c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, multiple carboxylase deficiency; date=20060920 ||| term=orthologous to S. cerevisiae YDL141W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0018271; biotin-protein ligase activity
GO:0009305; protein amino acid biotinylation
GO:0005737; cytoplasm" ; gene "SPBC30D10.07c" ; product "biotin-protein ligase (predicted)" ; EC_number "6.3.4.15" ;
chromosome2 GeneDB CDS 3086128 3088023 . + . mRNA SPBC30D10.07c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3088243 3088424 . - . mRNA SPBC30D10.06 ; ID "SPBC30D10.06" ; systematic_id "SPBC30D10.06" ; note "mRNA from AU013393" ;
chromosome2 GeneDB CDS_parts 3088425 3088893 . - . mRNA SPBC30D10.06 ; systematic_id "SPBC30D10.06" ; colour "7" ; gene "lsm4 ||| SPBC30D10.06" ; Alias "lsm4" ; db_xref "SPD:04/04C09" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005688; snRNP U6
GO:0003723; RNA binding
GO:0006402; mRNA catabolism
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsm4" ; product "U6 snRNP-associated protein Lsm4 (predicted)" ;
chromosome2 GeneDB CDS 3088425 3088595 . - . mRNA SPBC30D10.06 ; colour "7" ;
chromosome2 GeneDB CDS 3088661 3088852 . - . mRNA SPBC30D10.06 ; colour "7" ;
chromosome2 GeneDB CDS 3088891 3088893 . - . mRNA SPBC30D10.06 ; colour "7" ;
chromosome2 GeneDB misc_feature 3088596 3088607 . - . misc_feature unknown_2487 ; colour "6" ; note "ctaacacaacag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3088596 3088660 . - . intron SPBC30D10.06 ; systematic_id "SPBC30D10.06" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3088655 3088660 . - . misc_feature unknown_2488 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3088853 3088866 . - . misc_feature unknown_2489 ; colour "6" ; note "ctaacatcctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3088885 3088890 . - . misc_feature unknown_2490 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3088892 3088911 . - . mRNA SPBC30D10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.06" ; systematic_id "SPBC30D10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3089021 3089272 . + . mRNA SPBC30D10.21 ; db_xref "PMID:21270388" ; systematic_id "SPBC30D10.21" ;
chromosome2 GeneDB CDS_parts 3089273 3089634 . + . mRNA SPBC30D10.21 ; Alias "new18" ; systematic_id "SPBC30D10.21" ; GO "GO:0005739; mitochondrion" ; colour "10" ; controlled_curation "term=orthologous to S. cerevisiae YDR493W; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=conserved in Eukaryotes; date=20090721 ||| term=conserved in Metazoa; date=20090721 ||| term=conserved in Vertebrates; date=20090721 ||| term=conserved in Eukaryotes only; date=20090721 ||| term=predominantly uniform single copy (one to one); date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "new18" ; gene "SPBC30D10.21" ; product "mitochondrial protein" ;
chromosome2 GeneDB CDS 3089273 3089333 . + . mRNA SPBC30D10.21 ; colour "10" ;
chromosome2 GeneDB CDS 3089393 3089634 . + . mRNA SPBC30D10.21 ; colour "10" ;
chromosome2 GeneDB intron 3089334 3089392 . + . intron unknown_2491 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome2 GeneDB 5'-UTR 3089967 3089996 . + . mRNA SPBC30D10.05c ; ID "SPBC30D10.05c" ; systematic_id "SPBC30D10.05c" ; note "mRNA from spc00423" ;
chromosome2 GeneDB CDS_parts 3089997 3090740 . + . mRNA SPBC30D10.05c ; db_xref "SPD:09/09A08" ; systematic_id "SPBC30D10.05c" ; colour "7" ; GO "GO:0006729; tetrahydrobiopterin biosynthetic process
GO:0004757; sepiapterin reductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR035C and YIR036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SPR ortholog; date=20100720 ||| term=disease associated, dystonia; date=20100720 ||| term=disease associated, neurological disorders; date=20100720" ; gene "SPBC30D10.05c" ; product "sepiapterin reductase (predicted)" ; EC_number "1.1.1.153" ;
chromosome2 GeneDB CDS 3089997 3090740 . + . mRNA SPBC30D10.05c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3090741 3090780 . + . mRNA SPBC30D10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.05c" ; systematic_id "SPBC30D10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3090859 3090923 . - . mRNA SPBC30D10.04 ; ID "SPBC30D10.04" ; systematic_id "SPBC30D10.04" ; note "mRNA from AY498547" ;
chromosome2 GeneDB CDS_parts 3090924 3091527 . - . mRNA SPBC30D10.04 ; systematic_id "SPBC30D10.04" ; colour "2" ; gene "swi3 ||| SPBC30D10.04" ; db_xref "SPD:03/03H05" ; Alias "swi3" ; GO "GO:0048478; replication fork protection
GO:0043596; nuclear replication fork
GO:0031298; replication fork protection complex
GO:0005515; protein binding
GO:0007531; mating type determination
GO:0005634; nucleus
GO:0043111; replication fork arrest" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=UniProtKB:Q6IUU5; date=20090423 ||| term=human TIPIN ortholog; date=20090423" ; primary_name "swi3" ; product "replication fork protection complex subunit Swi3" ;
chromosome2 GeneDB CDS 3090924 3091302 . - . mRNA SPBC30D10.04 ; colour "2" ;
chromosome2 GeneDB CDS 3091361 3091527 . - . mRNA SPBC30D10.04 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3091528 3091603 . - . mRNA SPBC30D10.04 ; ID "SPBC30D10.04" ; systematic_id "SPBC30D10.04" ; note "mRNA from AY498547" ;
chromosome2 GeneDB 5'-UTR 3091991 3092082 . + . mRNA SPBC30D10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.03c" ; systematic_id "SPBC30D10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3092083 3093399 . + . mRNA SPBC30D10.03c ; db_xref "SPD:22/22H10" ; systematic_id "SPBC30D10.03c" ; colour "7" ; GO "GO:0050483; IMP 5'-nucleotidase activity
GO:0006190; inosine salvage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=orthologous to S. cerevisiae YOR155C; date=19700101" ; gene "SPBC30D10.03c" ; product "IMP 5'-nucleotidase (predicted)" ;
chromosome2 GeneDB CDS 3092083 3092290 . + . mRNA SPBC30D10.03c ; colour "7" ;
chromosome2 GeneDB CDS 3092340 3093262 . + . mRNA SPBC30D10.03c ; colour "7" ;
chromosome2 GeneDB CDS 3093313 3093399 . + . mRNA SPBC30D10.03c ; colour "7" ;
chromosome2 GeneDB misc_feature 3092291 3092296 . + . misc_feature unknown_2492 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3092320 3092339 . + . misc_feature unknown_2493 ; colour "6" ; note "ctaacctttctcattgatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3093263 3093268 . + . misc_feature unknown_2494 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3093295 3093312 . + . misc_feature unknown_2495 ; colour "6" ; note "ctaaccacctattcaaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3093595 3093810 . - . mRNA SPBC30D10.02 ; ID "SPBC30D10.02" ; systematic_id "SPBC30D10.02" ; note "mRNA from AU009008" ;
chromosome2 GeneDB CDS_parts 3093811 3094335 . - . mRNA SPBC30D10.02 ; db_xref "SPD:34/34D11" ; systematic_id "SPBC30D10.02" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003714; transcription corepressor activity
GO:0000122; negative regulation of transcription initiation from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YDR397C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC30D10.02" ; product "transcription corepressor (predicted)" ;
chromosome2 GeneDB CDS 3093811 3094253 . - . mRNA SPBC30D10.02 ; colour "7" ;
chromosome2 GeneDB CDS 3094293 3094335 . - . mRNA SPBC30D10.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 3094254 3094267 . - . misc_feature unknown_2496 ; colour "6" ; note "ctaataatgtgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3094287 3094292 . - . misc_feature unknown_2497 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3094334 3094400 . - . mRNA SPBC30D10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC30D10.02" ; systematic_id "SPBC30D10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3094849 3094993 . - . mRNA SPBC1778.01c ; ID "SPBC1778.01c" ; systematic_id "SPBC1778.01c" ; note "mRNA from AU013266" ;
chromosome2 GeneDB CDS_parts 3094994 3096322 . - . mRNA SPBC1778.01c ; systematic_id "SPBC1778.01c" ; colour "7" ; gene "SPBC30D10.01 ||| SPBC1778.01c ||| zuo1 ||| mpp11" ; Alias "zuo1" ; db_xref "SPD:20/20E12" ; synonym "mpp11 ||| SPBC30D10.01" ; GO "GO:0005737; cytoplasm
GO:0005840; ribosome
GO:0030544; Hsp70 protein binding
GO:0051082; unfolded protein binding
GO:0006457; protein folding
GO:0006450; regulation of translational fidelity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR285C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "zuo1" ; product "zuotin (predicted)" ;
chromosome2 GeneDB CDS 3094994 3096322 . - . mRNA SPBC1778.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 3095951 3096058 . - . misc_feature unknown_2498 ; note "nominal overlap with cosmid SPBC30D10, EM:Z97992 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 3095951 3096058 . + . misc_feature unknown_2499 ; note "nominal overlap with cosmid SPBC1778, EM:AL049489 S. pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 3096321 3096336 . - . mRNA SPBC1778.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1778.01c" ; systematic_id "SPBC1778.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB rRNA 3096968 3097078 . - . rRNA SPRRNA.54 ; systematic_id "SPRRNA.54" ; product "8S rRNA (predicted)" ; note "via Ensembl pipeline" ;
chromosome2 GeneDB 5'-UTR 3098295 3098365 . + . mRNA SPBC1778.02 ; ID "SPBC1778.02" ; systematic_id "SPBC1778.02" ; note "mRNA from AY034032" ;
chromosome2 GeneDB CDS_parts 3098366 3100576 . + . mRNA SPBC1778.02 ; systematic_id "SPBC1778.02" ; colour "2" ; gene "rap1 ||| SPBC1778.02" ; Alias "rap1" ; db_xref "SPD:26/26G09" ; GO "GO:0000781; chromosome, telomeric region
GO:0070187; telosome
GO:0005724; nuclear telomeric heterochromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006348; chromatin silencing at telomere
GO:0031848; protection from non-homologous end joining at telomere
GO:0016233; telomere capping
GO:0045141; telomere clustering
GO:0000723; telomere maintenance
GO:0031860; telomeric 3' overhang formation
GO:0006366; transcription from RNA polymerase II promoter
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YNL216W; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; attribution=Yasushi Hiraoka, pers comm; date=2000522" ; primary_name "rap1" ; product "telomere binding protein Rap1" ;
chromosome2 GeneDB CDS 3098366 3098461 . + . mRNA SPBC1778.02 ; colour "2" ;
chromosome2 GeneDB CDS 3098508 3098879 . + . mRNA SPBC1778.02 ; colour "2" ;
chromosome2 GeneDB CDS 3098963 3100576 . + . mRNA SPBC1778.02 ; colour "2" ;
chromosome2 GeneDB intron 3098462 3098507 . + . intron SPBC1778.02 ; systematic_id "SPBC1778.02" ; note "confirmed by cDNA" ;
chromosome2 GeneDB misc_feature 3098880 3098885 . + . misc_feature unknown_2500 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB intron 3098880 3098962 . + . intron SPBC1778.02 ; systematic_id "SPBC1778.02" ; note "confirmed by cDNA" ;
chromosome2 GeneDB 3'-UTR 3100577 3100698 . + . mRNA SPBC1778.02 ; ID "SPBC1778.02" ; systematic_id "SPBC1778.02" ; note "mRNA from AY034032" ;
chromosome2 GeneDB 3'-UTR 3100735 3100854 . - . mRNA SPBC1778.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1778.03c" ; systematic_id "SPBC1778.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3100855 3102165 . - . mRNA SPBC1778.03c ; db_xref "SPD:22/22G10" ; systematic_id "SPBC1778.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL067W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006734; NADH metabolism
GO:0000210; NAD+ diphosphatase activity
GO:0005737; cytoplasm" ; gene "SPBC1778.03c" ; product "NADH pyrophosphatase (predicted)" ; EC_number "3.6.1.-" ;
chromosome2 GeneDB CDS 3100855 3101953 . - . mRNA SPBC1778.03c ; colour "7" ;
chromosome2 GeneDB CDS 3102134 3102165 . - . mRNA SPBC1778.03c ; colour "7" ;
chromosome2 GeneDB misc_feature 3101954 3101968 . - . misc_feature unknown_2501 ; colour "6" ; note "ctaacgtttttcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3102128 3102133 . - . misc_feature unknown_2502 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3102164 3102271 . - . mRNA SPBC1778.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1778.03c" ; systematic_id "SPBC1778.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3103284 3104851 . + . mRNA SPBC1778.04 ; systematic_id "SPBC1778.04" ; colour "2" ; gene "spo6 ||| SPBC1778.04" ; Alias "spo6" ; db_xref "SPD:25/25C09" ; GO "GO:0007135; meiosis II
GO:0030437; sporulation (sensu Fungi)
GO:0005654; nucleoplasm
GO:0019887; protein kinase regulator activity
GO:0006468; protein amino acid phosphorylation
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=orthologous to S. cerevisiae YDR052C; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spo6" ; product "Spo4-Spo6 kinase complex regulatory subunit Spo6" ;
chromosome2 GeneDB CDS 3103284 3103748 . + . mRNA SPBC1778.04 ; colour "2" ;
chromosome2 GeneDB CDS 3103800 3103932 . + . mRNA SPBC1778.04 ; colour "2" ;
chromosome2 GeneDB CDS 3103979 3104700 . + . mRNA SPBC1778.04 ; colour "2" ;
chromosome2 GeneDB CDS 3104747 3104851 . + . mRNA SPBC1778.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 3103749 3103754 . + . misc_feature unknown_2503 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3103785 3103799 . + . misc_feature unknown_2504 ; colour "6" ; note "ctaacacatatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3103933 3103938 . + . misc_feature unknown_2505 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3103966 3103978 . + . misc_feature unknown_2506 ; colour "6" ; note "ctaactttcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3104701 3104706 . + . misc_feature unknown_2507 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3104732 3104746 . + . misc_feature unknown_2508 ; colour "6" ; note "ctaacacatcgatag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 3105116 3105412 . - . mRNA SPBC1778.05c ; db_xref "SPD:01/01D08" ; systematic_id "SPBC1778.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC1778.05c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3105116 3105412 . - . mRNA SPBC1778.05c ; colour "8" ;
chromosome2 GeneDB LTR 3105823 3106180 . - . LTR unknown_2509 ; colour "4" ; note "lone tf2-type LTR" ;
chromosome2 GeneDB 3'-UTR 3106508 3106766 . - . mRNA SPBC1778.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1778.06c" ; systematic_id "SPBC1778.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3106767 3108741 . - . mRNA SPBC1778.06c ; systematic_id "SPBC1778.06c" ; colour "2" ; gene "fim1 ||| SPBC1778.06c" ; db_xref "SPD:46/46C02" ; Alias "fim1" ; GO "GO:0032432; actin cable
GO:0030479; actin cortical patch
; contractile ring
; contractile ring
GO:0003779; actin binding
GO:0051015; actin filament binding
GO:0030674; protein binding, bridging
GO:0051666; actin cortical patch localization
GO:0051764; actin cross link formation
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0051017; actin filament bundle formation
GO:0008360; regulation of cell shape
GO:0000915; cytokinesis, contractile ring formation
GO:0033205; cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0030835; negative regulation of actin filament depolymerization
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=calponin homology (CH) domain; date=19700101 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YDR129C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11694585; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human PLS1 and PLS3 and LCP1 ortholog; date=20100217" ; primary_name "fim1" ; product "fimbrin" ;
chromosome2 GeneDB CDS 3106767 3106888 . - . mRNA SPBC1778.06c ; colour "2" ;
chromosome2 GeneDB CDS 3106943 3108431 . - . mRNA SPBC1778.06c ; colour "2" ;
chromosome2 GeneDB CDS 3108508 3108741 . - . mRNA SPBC1778.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 3106889 3106904 . - . misc_feature unknown_2510 ; colour "6" ; note "ctaacacatcgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3106937 3106942 . - . misc_feature unknown_2511 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3108432 3108444 . - . misc_feature unknown_2512 ; colour "6" ; note "ctaatgcatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3108502 3108507 . - . misc_feature unknown_2513 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3108740 3108816 . - . mRNA SPBC1778.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1778.06c" ; systematic_id "SPBC1778.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3109892 3109960 . + . mRNA SPBC1778.07 ; ID "SPBC1778.07" ; systematic_id "SPBC1778.07" ; note "mRNA from AU010991" ;
chromosome2 GeneDB CDS_parts 3109961 3111199 . + . mRNA SPBC1778.07 ; db_xref "SPD:19/19G08" ; systematic_id "SPBC1778.07" ; colour "10" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL092W and YMR209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c9orf41 ortholog; date=20100727" ; gene "SPBC1778.07" ; product "methyltransferase N2227 family" ;
chromosome2 GeneDB CDS 3109961 3110462 . + . mRNA SPBC1778.07 ; colour "10" ;
chromosome2 GeneDB CDS 3110580 3111199 . + . mRNA SPBC1778.07 ; colour "10" ;
chromosome2 GeneDB misc_feature 3110463 3110468 . + . misc_feature unknown_2514 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3110566 3110579 . + . misc_feature unknown_2515 ; colour "6" ; note "ctaacatttaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3111343 3111457 . - . mRNA SPBC1778.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1778.08c" ; systematic_id "SPBC1778.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3111458 3112204 . - . mRNA SPBC1778.08c ; systematic_id "SPBC1778.08c" ; colour "2" ; gene "arc3 ||| arc21 ||| SPBC1778.08c" ; Alias "arc3" ; db_xref "SPD:09/09B02" ; synonym "arc21" ; GO "GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0000147; actin cortical patch assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR370C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arc3" ; product "ARP2/3 actin-organizing complex subunit Arc21" ;
chromosome2 GeneDB CDS 3111458 3111600 . - . mRNA SPBC1778.08c ; colour "2" ;
chromosome2 GeneDB CDS 3111697 3111972 . - . mRNA SPBC1778.08c ; colour "2" ;
chromosome2 GeneDB CDS 3112053 3112152 . - . mRNA SPBC1778.08c ; colour "2" ;
chromosome2 GeneDB CDS 3112199 3112204 . - . mRNA SPBC1778.08c ; colour "2" ;
chromosome2 GeneDB misc_feature 3111601 3111617 . - . misc_feature unknown_2516 ; colour "6" ; note "ctaactattaaaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3111691 3111696 . - . misc_feature unknown_2517 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3111973 3111990 . - . misc_feature unknown_2518 ; colour "6" ; note "ctaacattttttatacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3112047 3112052 . - . misc_feature unknown_2519 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3112153 3112169 . - . misc_feature unknown_2520 ; colour "6" ; note "ctgacatgttatgaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3112193 3112198 . - . misc_feature unknown_2521 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3112203 3112229 . - . mRNA SPBC1778.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1778.08c" ; systematic_id "SPBC1778.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3112498 3112723 . + . mRNA SPBC1778.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1778.09" ; systematic_id "SPBC1778.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3112724 3113968 . + . mRNA SPBC1778.09 ; db_xref "SPD:19/19H05" ; systematic_id "SPBC1778.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human USP6N ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; gene "SPBC1778.09" ; product "GTPase activating protein (predicted)" ;
chromosome2 GeneDB CDS 3112724 3113968 . + . mRNA SPBC1778.09 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3113969 3114145 . + . mRNA SPBC1778.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1778.09" ; systematic_id "SPBC1778.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3114321 3114460 . - . mRNA SPBC1778.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1778.10c" ; systematic_id "SPBC1778.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3114461 3116383 . - . mRNA SPBC1778.10c ; systematic_id "SPBC1778.10c" ; colour "2" ; gene "ppk21 ||| SPBC1778.10c ||| SPBC4C3.11" ; Alias "ppk21" ; db_xref "SPD:26/26G10" ; synonym "SPBC4C3.11" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PKC subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YDR490C and YOL100W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "ppk21" ; product "serine/threonine protein kinase Ppk21" ;
chromosome2 GeneDB CDS 3114461 3115394 . - . mRNA SPBC1778.10c ; colour "2" ;
chromosome2 GeneDB CDS 3115445 3115615 . - . mRNA SPBC1778.10c ; colour "2" ;
chromosome2 GeneDB CDS 3115679 3115788 . - . mRNA SPBC1778.10c ; colour "2" ;
chromosome2 GeneDB CDS 3115843 3116079 . - . mRNA SPBC1778.10c ; colour "2" ;
chromosome2 GeneDB CDS 3116183 3116383 . - . mRNA SPBC1778.10c ; colour "2" ;
chromosome2 GeneDB misc_feature 3114854 3114961 . - . misc_feature unknown_2522 ; note "nominal overlap with cosmid SPBC4C3, EM:AL021730 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 3114854 3114961 . + . misc_feature unknown_2523 ; note "nominal overlap with cosmid SPBC1778, EM:AL021730 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 3115395 3115410 . - . misc_feature unknown_2524 ; colour "6" ; note "ctgacaaatatttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3115439 3115444 . - . misc_feature unknown_2525 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3115616 3115636 . - . misc_feature unknown_2526 ; colour "6" ; note "ctaattctaacctattttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3115673 3115678 . - . misc_feature unknown_2527 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3115789 3115806 . - . misc_feature unknown_2528 ; colour "6" ; note "ttaactaagctttggtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3115837 3115842 . - . misc_feature unknown_2529 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3116080 3116093 . - . misc_feature unknown_2530 ; colour "6" ; note "ctaatattcgttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3116177 3116182 . - . misc_feature unknown_2531 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3116382 3116518 . - . mRNA SPBC1778.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1778.10c" ; systematic_id "SPBC1778.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3117669 3118627 . + . mRNA SPBC4C3.10c ; systematic_id "SPBC4C3.10c" ; colour "7" ; gene "pre3 ||| SPBC4C3.10c" ; Alias "pre3" ; db_xref "SPD:13/13E12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005634; nucleus
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0051726; regulation of progression through cell cycle
GO:0000278; mitotic cell cycle" ; primary_name "pre3" ; product "20S proteasome component beta 1 Pre3 (predicted)" ; EC_number "3.4.25.1" ;
chromosome2 GeneDB CDS 3117669 3117724 . + . mRNA SPBC4C3.10c ; colour "7" ;
chromosome2 GeneDB CDS 3117768 3117850 . + . mRNA SPBC4C3.10c ; colour "7" ;
chromosome2 GeneDB CDS 3117903 3118035 . + . mRNA SPBC4C3.10c ; colour "7" ;
chromosome2 GeneDB CDS 3118219 3118627 . + . mRNA SPBC4C3.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 3117725 3117730 . + . misc_feature unknown_2532 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3117756 3117767 . + . misc_feature unknown_2533 ; colour "6" ; note "ctgactttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3117851 3117856 . + . misc_feature unknown_2534 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3117890 3117902 . + . misc_feature unknown_2535 ; colour "6" ; note "ctaacgttgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3118036 3118041 . + . misc_feature unknown_2536 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3118204 3118218 . + . misc_feature unknown_2537 ; colour "6" ; note "ctaacgattatgaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3118628 3118826 . + . mRNA SPBC4C3.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.10c" ; systematic_id "SPBC4C3.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3118883 3119226 . - . mRNA SPBC4C3.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.09" ; systematic_id "SPBC4C3.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3119227 3120357 . - . mRNA SPBC4C3.09 ; db_xref "SPD:17/17G09" ; systematic_id "SPBC4C3.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YOR320C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005794; Golgi apparatus
GO:0008375; acetylglucosaminyltransferase activity
GO:0006487; protein amino acid N-linked glycosylation" ; gene "SPBC4C3.09" ; product "acetylglucosaminyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB CDS 3119227 3120357 . - . mRNA SPBC4C3.09 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3120356 3120530 . - . mRNA SPBC4C3.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.09" ; systematic_id "SPBC4C3.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3120779 3120982 . + . misc_RNA SPNCRNA.23 ; Alias "prl23" ; db_xref "PMID:12597277 ||| EMBL:AB084835" ; systematic_id "SPNCRNA.23" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl23" ; gene "prl23 ||| SPNCRNA.23" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB CDS_parts 3121286 3122404 . - . mRNA SPBC4C3.08 ; systematic_id "SPBC4C3.08" ; colour "7" ; gene "SPBC4C3.08 ||| mug136" ; Alias "mug136" ; db_xref "SPD:17/17F04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YOR320C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008375; acetylglucosaminyltransferase activity
GO:0006487; protein amino acid N-linked glycosylation
GO:0005794; Golgi apparatus" ; primary_name "mug136" ; product "acetylglucosaminyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB CDS 3121286 3122404 . - . mRNA SPBC4C3.08 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3122650 3122897 . - . mRNA SPBC4C3.07 ; ID "SPBC4C3.07" ; systematic_id "SPBC4C3.07" ; note "mRNA from AU007268" ;
chromosome2 GeneDB CDS_parts 3122898 3123806 . - . mRNA SPBC4C3.07 ; systematic_id "SPBC4C3.07" ; colour "2" ; gene "SPBC4C3.07" ; note "was incorrectly annotated as COP9/signalosome complex, updated 8 Sept 2000, (PMID 15904532)" ; obsolete_name "csn6" ; db_xref "SPD:12/12E10" ; GO "GO:0006413; translational initiation
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0005737; cytoplasm
GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
GO:0004843; ubiquitin-specific protease activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15904532; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "translation initiation factor eIF3f" ;
chromosome2 GeneDB CDS 3122898 3123806 . - . mRNA SPBC4C3.07 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3123805 3123831 . - . mRNA SPBC4C3.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.07" ; systematic_id "SPBC4C3.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3124156 3124203 . - . mRNA SPBC4C3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.06" ; systematic_id "SPBC4C3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3124204 3126701 . - . mRNA SPBC4C3.06 ; systematic_id "SPBC4C3.06" ; colour "7" ; gene "SPBC4C3.06" ; db_xref "SPD:29/29A07" ; Alias "syp1" ; GO "GO:0030036; cytoskeleton organization
GO:0030427; site of polarized growth" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR030C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "syp1" ; product "cytoskeletal protein Syp1 (predicted)" ;
chromosome2 GeneDB CDS 3124204 3126618 . - . mRNA SPBC4C3.06 ; colour "7" ;
chromosome2 GeneDB CDS 3126660 3126701 . - . mRNA SPBC4C3.06 ; colour "7" ;
chromosome2 GeneDB misc_feature 3126619 3126629 . - . misc_feature unknown_2538 ; colour "6" ; note "ttaacaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3126654 3126659 . - . misc_feature unknown_2539 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_RNA 3126888 3127616 . + . misc_RNA SPNCRNA.412 ; db_xref "PMID:18488015" ; synonym "SPNG1772" ; systematic_id "SPNCRNA.412" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 3127850 3127898 . + . mRNA SPBC4C3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.05c" ; systematic_id "SPBC4C3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3127899 3132968 . + . mRNA SPBC4C3.05c ; systematic_id "SPBC4C3.05c" ; colour "2" ; gene "nuc1 ||| rpa1 ||| SPBC4C3.05c" ; Alias "nuc1" ; db_xref "SPD:34/34B06" ; synonym "rpa1" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006406; mRNA export from nucleus
GO:0007000; nucleolus organization and biogenesis
GO:0006360; transcription from RNA polymerase I promoter
GO:0034503; protein localization to rDNA repeats" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR341W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nuc1" ; product "DNA-directed RNA polymerase I complex large subunit Nuc1" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB CDS 3127899 3132968 . + . mRNA SPBC4C3.05c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3132969 3133129 . + . mRNA SPBC4C3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.05c" ; systematic_id "SPBC4C3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3133293 3133494 . - . mRNA SPBC4C3.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.12" ; systematic_id "SPBC4C3.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3133495 3135486 . - . mRNA SPBC4C3.12 ; systematic_id "SPBC4C3.12" ; colour "2" ; gene "sep1 ||| SPBC4C3.12" ; Alias "sep1" ; db_xref "SPD:40/40G08" ; obsolete_name "SPBC4C3.05" ; GO "GO:0005634; nucleus
GO:0005667; transcription factor complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0010590; regulation of cell separation during cytokinesis
GO:0045896; regulation of transcription, mitotic
GO:0045896; regulation of transcription, mitotic" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=fork head domain; date=19700101 ||| term=orthologous to S. cerevisiae YCR065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15195092; date=20090110 ||| term=DNA binding specificity, binds Forkhead 5'-TTT[G/A]TTTACA-3'; db_xref=PMID:15195092; date=20100302 ||| term=gene expression, transcriptionally regulates ace2; db_xref=PMID:15509866; date=20100825" ; primary_name "sep1" ; product "fork head transcription factor Sep1" ;
chromosome2 GeneDB CDS 3133495 3135486 . - . mRNA SPBC4C3.12 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3135485 3136040 . - . mRNA SPBC4C3.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.12" ; systematic_id "SPBC4C3.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 3136259 3136520 . + . LTR unknown_2540 ; note "208 (+1) 74 330 TF1" ;
chromosome2 GeneDB 5'-UTR 3137575 3137605 . + . mRNA SPBC4C3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.04c" ; systematic_id "SPBC4C3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3137606 3137908 . + . mRNA SPBC4C3.04c ; db_xref "SPD:01/01D12" ; systematic_id "SPBC4C3.04c" ; colour "7" ; GO "GO:0005085; guanyl-nucleotide exchange factor activity
GO:0008270; zinc ion binding
GO:0006892; post-Golgi vesicle-mediated transport
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC4C3.04c" ; product "guanyl-nucleotide exchange factor (predicted)" ;
chromosome2 GeneDB CDS 3137606 3137908 . + . mRNA SPBC4C3.04c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3137909 3138080 . + . mRNA SPBC4C3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.04c" ; systematic_id "SPBC4C3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3138405 3138550 . - . mRNA SPBC4C3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.03" ; systematic_id "SPBC4C3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3138551 3139567 . - . mRNA SPBC4C3.03 ; db_xref "KEGG:MAP00260; ||| SPD:15/15B06" ; systematic_id "SPBC4C3.03" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR025W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009088; threonine biosynthesis
GO:0006555; methionine metabolism
GO:0004413; homoserine kinase activity" ; gene "SPBC4C3.03" ; product "homoserine kinase (predicted)" ; EC_number "2.7.1.39" ;
chromosome2 GeneDB CDS 3138551 3139567 . - . mRNA SPBC4C3.03 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3139566 3140108 . - . mRNA SPBC4C3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4C3.03" ; systematic_id "SPBC4C3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3140608 3140721 . + . mRNA SPBC405.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC405.01" ; systematic_id "SPBC405.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3140722 3143088 . + . mRNA SPBC405.01 ; systematic_id "SPBC405.01" ; colour "2" ; gene "ade1 ||| min4 ||| SPBC4C3.02c ||| SPBC405.01" ; Alias "ade1" ; db_xref "SPD:33/33G10" ; synonym "min4 ||| SPBC4C3.02c" ; GO "GO:0006189; 'de novo' IMP biosynthesis
GO:0004641; phosphoribosylformylglycinamidine cyclo-ligase
GO:0004637; phosphoribosylamine-glycine ligase activity" ; controlled_curation "term=catalytic activity, bifunctional enzyme; cv=cat_act; date=19700101 ||| term=orthologous to S. cerevisiae YGL234W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ade1" ; product "phosphoribosylamine-glycine ligase" ; EC_number "6.3.3.1 ||| 6.3.4.13" ;
chromosome2 GeneDB CDS 3140722 3143088 . + . mRNA SPBC405.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 3142530 3144620 . + . misc_feature unknown_2541 ; note "nominal overlap between c405 and c4C3" ;
chromosome2 GeneDB 3'-UTR 3143089 3143186 . + . mRNA SPBC405.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC405.01" ; systematic_id "SPBC405.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3143466 3144809 . - . mRNA SPBC405.02c ; db_xref "SPD:20/20G08" ; systematic_id "SPBC405.02c" ; synonym "SPBC4C3.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3143466 3144809 . - . mRNA SPBC405.02c ; colour "8" ;
chromosome2 GeneDB 5'-UTR 3144808 3144945 . - . mRNA SPBC405.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC405.02c" ; systematic_id "SPBC405.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3145450 3145629 . - . mRNA SPBC405.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC405.03c" ; systematic_id "SPBC405.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3145630 3146655 . - . mRNA SPBC405.03c ; db_xref "SPD:15/15D11" ; systematic_id "SPBC405.03c" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0022857; transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML018C and YDR438W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20081124" ; gene "SPBC405.03c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 3145630 3146655 . - . mRNA SPBC405.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3146654 3146873 . - . mRNA SPBC405.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC405.03c" ; systematic_id "SPBC405.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3147205 3147477 . - . mRNA SPBC405.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC405.04c" ; systematic_id "SPBC405.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3147478 3148230 . - . mRNA SPBC405.04c ; systematic_id "SPBC405.04c" ; colour "2" ; gene "ypt7 ||| SPBC405.04c" ; Alias "ypt7" ; db_xref "SPD:31/31H05" ; GO "GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006896; Golgi to vacuole transport
GO:0006886; intracellular protein transport
GO:0045324; late endosome to vacuole transport
GO:0031321; prospore formation
GO:0030100; regulation of endocytosis
GO:0007264; small GTPase mediated signal transduction
GO:0007035; vacuolar acidification
GO:0042144; vacuole fusion, non-autophagic
GO:0051469; vesicle fusion with vacuole
GO:0061191; positive regulation of vacuole fusion, non-autophagic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, vacoule organization defects, fragmented vacuoles; db_xref=PMID:9443913; date=20100704 ||| term=phenotype, sporulation defects; db_xref=PMID:16357443; date=20101115 ||| term=orthologous to S. cerevisiae YML001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ypt7" ; product "GTPase Ypt7" ;
chromosome2 GeneDB CDS 3147478 3147690 . - . mRNA SPBC405.04c ; colour "2" ;
chromosome2 GeneDB CDS 3147753 3148076 . - . mRNA SPBC405.04c ; colour "2" ;
chromosome2 GeneDB CDS 3148150 3148230 . - . mRNA SPBC405.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 3147691 3147703 . - . misc_feature unknown_2542 ; colour "6" ; note "ctaataatttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3147747 3147752 . - . misc_feature unknown_2543 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3148077 3148094 . - . misc_feature unknown_2544 ; colour "6" ; note "ttgaccaaatctgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3148144 3148149 . - . misc_feature unknown_2545 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3148229 3148359 . - . mRNA SPBC405.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC405.04c" ; systematic_id "SPBC405.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3148510 3148751 . + . mRNA SPBC405.05 ; ID "SPBC405.05" ; systematic_id "SPBC405.05" ; note "mRNA from SPD255" ;
chromosome2 GeneDB CDS_parts 3148752 3149183 . + . mRNA SPBC405.05 ; db_xref "SPD:03/03F02" ; systematic_id "SPBC405.05" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC405.05" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3148752 3149183 . + . mRNA SPBC405.05 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 3149184 3149656 . + . mRNA SPBC405.05 ; ID "SPBC405.05" ; systematic_id "SPBC405.05" ; note "mRNA from SPD255" ;
chromosome2 GeneDB misc_RNA 3150075 3150475 . + . misc_RNA SPNCRNA.413 ; db_xref "PMID:18488015" ; synonym "SPNG1778" ; systematic_id "SPNCRNA.413" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB misc_RNA 3150467 3153000 . - . misc_RNA SPNCRNA.541 ; db_xref "PMID:18488015" ; synonym "SPNGAF8" ; systematic_id "SPNCRNA.541" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB 5'-UTR 3150556 3150757 . + . mRNA SPBC405.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC405.06" ; systematic_id "SPBC405.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3150758 3151999 . + . mRNA SPBC405.06 ; db_xref "SPD:19/19H02" ; systematic_id "SPBC405.06" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding
GO:0005739; mitochondrion
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR090w; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; gene "SPBC405.06" ; product "DNAJ protein Xdj1 (predicted)" ;
chromosome2 GeneDB CDS 3150758 3151999 . + . mRNA SPBC405.06 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3152000 3152652 . + . mRNA SPBC405.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC405.06" ; systematic_id "SPBC405.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3153261 3153382 . + . misc_RNA SPNCRNA.414 ; db_xref "PMID:18488015" ; synonym "SPNG1779" ; systematic_id "SPNCRNA.414" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 3153502 3153876 . + . mRNA SPBC405.07 ; systematic_id "SPBC405.07" ; colour "2" ; gene "rpl3602 ||| rpl36-2 ||| rpl36 ||| SPBC405.07" ; Alias "rpl3602" ; db_xref "SPD:31/31C11" ; synonym "rpl36-2 ||| rpl36" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR194W and YPL249C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl3602" ; product "60S ribosomal protein L36" ;
chromosome2 GeneDB CDS 3153502 3153723 . + . mRNA SPBC405.07 ; colour "2" ;
chromosome2 GeneDB CDS 3153799 3153876 . + . mRNA SPBC405.07 ; colour "2" ;
chromosome2 GeneDB misc_feature 3153724 3153729 . + . misc_feature unknown_2546 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3153785 3153798 . + . misc_feature unknown_2547 ; colour "6" ; note "ctaacaggttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_RNA 3154684 3155288 . + . misc_RNA SPNCRNA.415 ; db_xref "PMID:18488015" ; synonym "SPNG1780" ; systematic_id "SPNCRNA.415" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_feature 3156856 3156954 . + . misc_feature unknown_2548 ; note "nominal overlap with cosmid SPBC609 and SPBC405" ;
chromosome2 GeneDB CDS_parts 3157597 3161212 . + . mRNA SPBC609.01 ; db_xref "SPD:48/48E03" ; systematic_id "SPBC609.01" ; colour "10" ; GO "GO:0003723; RNA binding
GO:0004540; ribonuclease activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080901 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC609.01" ; product "ribonuclease II (RNB) family" ;
chromosome2 GeneDB CDS 3157597 3157717 . + . mRNA SPBC609.01 ; colour "10" ;
chromosome2 GeneDB CDS 3157860 3161212 . + . mRNA SPBC609.01 ; colour "10" ;
chromosome2 GeneDB misc_feature 3157718 3157723 . + . misc_feature unknown_2549 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3157843 3157859 . + . misc_feature unknown_2550 ; colour "6" ; note "ctaactcagttatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3161213 3161453 . + . mRNA SPBC609.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC609.01" ; systematic_id "SPBC609.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3161778 3161822 . + . mRNA SPBC609.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC609.02" ; systematic_id "SPBC609.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3161823 3162869 . + . mRNA SPBC609.02 ; systematic_id "SPBC609.02" ; colour "2" ; gene "ptn1 ||| SPBC609.02" ; Alias "ptn1" ; db_xref "SPD:15/15H11" ; GO "GO:0016314; phosphatidylinositol-3,4,5- trisphosphate 3-phosphatase activity
GO:0009992; cellular osmoregulation
GO:0046488; phosphatidylinositol metabolism
GO:0007033; vacuole organization and biogenesis
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human PTEN and PTENP1 and TPTE2 and TPTE ortholog; date=20100217" ; primary_name "ptn1" ; product "phosphatidylinositol-3,4,5-trisphosphate3-phosphatasePtn1" ;
chromosome2 GeneDB CDS 3161823 3162869 . + . mRNA SPBC609.02 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3163157 3163171 . + . mRNA SPBC609.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC609.03" ; systematic_id "SPBC609.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3163172 3165784 . + . mRNA SPBC609.03 ; systematic_id "SPBC609.03" ; colour "2" ; gene "SPBC609.03" ; Alias "iqw1" ; db_xref "SPD:38/38F06" ; synonym "iqwd1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human IQWD ortholog; db_xref=PMID:18794354; date=20090909 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18794354; date=20090909 ||| term=name description, after human IQWD1; db_xref=db_xref=PMID:18794354; cv=name_description; date=20090909 ||| term=DDB-box; db_xref=PMID:18794354; date=20090909" ; primary_name "iqw1" ; product "WD repeat protein, Iqw1" ;
chromosome2 GeneDB CDS 3163172 3163232 . + . mRNA SPBC609.03 ; colour "2" ;
chromosome2 GeneDB CDS 3163278 3163371 . + . mRNA SPBC609.03 ; colour "2" ;
chromosome2 GeneDB CDS 3163418 3164102 . + . mRNA SPBC609.03 ; colour "2" ;
chromosome2 GeneDB CDS 3164144 3165642 . + . mRNA SPBC609.03 ; colour "2" ;
chromosome2 GeneDB CDS 3165694 3165784 . + . mRNA SPBC609.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 3163233 3163238 . + . misc_feature unknown_2551 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3163262 3163277 . + . misc_feature unknown_2552 ; colour "6" ; note "ctaactagtttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3163372 3163377 . + . misc_feature unknown_2553 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3163404 3163417 . + . misc_feature unknown_2554 ; colour "6" ; note "cttacaattttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3164103 3164108 . + . misc_feature unknown_2555 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3164128 3164143 . + . misc_feature unknown_2556 ; colour "6" ; note "ctaatgtttgttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3165643 3165648 . + . misc_feature unknown_2557 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3165678 3165693 . + . misc_feature unknown_2558 ; colour "6" ; note "ctaaccgttcttctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3165785 3165902 . + . mRNA SPBC609.03 ; ID "SPBC609.03" ; systematic_id "SPBC609.03" ; note "mRNA from AU008489" ;
chromosome2 GeneDB 5'-UTR 3166458 3166679 . + . mRNA SPBC609.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC609.04" ; systematic_id "SPBC609.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3166680 3168275 . + . mRNA SPBC609.04 ; systematic_id "SPBC609.04" ; colour "2" ; gene "caf5 ||| SPBC609.04" ; Alias "caf5" ; db_xref "SPD:45/45C07" ; GO "GO:0005886; plasma membrane
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0071313; cellular response to caffeine" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "caf5" ; product "spermine family transmembrane transporter Caf5" ;
chromosome2 GeneDB CDS 3166680 3168275 . + . mRNA SPBC609.04 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3168276 3168330 . + . mRNA SPBC609.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC609.04" ; systematic_id "SPBC609.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 3168963 3169272 . + . LTR unknown_2559 ; note "LTR fragment" ;
chromosome2 GeneDB CDS_parts 3169409 3171006 . + . mRNA SPBC609.05 ; systematic_id "SPBC609.05" ; colour "2" ; gene "SPBC609.05 ||| pob3" ; Alias "pob3" ; db_xref "SPD:25/25F06" ; GO "GO:0035101; FACT complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0005515; protein binding
GO:0045899; positive regulation of RNA polymerase II transcriptin preinitiation complex assembly
GO:0034613; cellular protein localization
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0043486; histone exchange
GO:0000070; mitotic sister chromatid segregation
GO:0006334; nucleosome assembly
GO:0006351; transcription, DNA-dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML069W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17614284; date=20070813 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pob3" ; product "FACT complex component Pob3" ;
chromosome2 GeneDB CDS 3169409 3169645 . + . mRNA SPBC609.05 ; colour "2" ;
chromosome2 GeneDB CDS 3169705 3171006 . + . mRNA SPBC609.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 3169646 3169651 . + . misc_feature unknown_2560 ; colour "6" ; note "ctgagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3169687 3169704 . + . misc_feature unknown_2561 ; colour "6" ; note "gtaaat, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3171007 3171345 . + . mRNA SPBC609.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC609.05" ; systematic_id "SPBC609.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB rRNA 3171566 3171645 . - . rRNA SPRRNA.41 ; db_xref "EMBL:K00771" ; systematic_id "SPRRNA.41" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.41" ; product "5S rRNA" ;
chromosome2 GeneDB misc_feature 3172017 3172156 . + . misc_feature unknown_2562 ; note "nominal overlap with cosmid SPBC609 and cosmid SPBC776" ;
chromosome2 GeneDB CDS_parts 3172323 3172561 . + . mRNA SPBC776.01 ; systematic_id "SPBC776.01" ; colour "2" ; gene "rpl29 ||| SPBC776.01" ; Alias "rpl29" ; db_xref "SPD:39/39G02" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR032C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl29" ; product "60S ribosomal protein L29" ;
chromosome2 GeneDB CDS 3172323 3172349 . + . mRNA SPBC776.01 ; colour "2" ;
chromosome2 GeneDB CDS 3172403 3172561 . + . mRNA SPBC776.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 3172350 3172355 . + . misc_feature unknown_2563 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3172389 3172402 . + . misc_feature unknown_2564 ; colour "6" ; note "ctaactgagcttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3172562 3172696 . + . mRNA SPBC776.01 ; ID "SPBC776.01" ; systematic_id "SPBC776.01" ; note "mRNA from AU009172" ;
chromosome2 GeneDB snoRNA 3172781 3172923 . + . snoRNA SPSNORNA.45 ; Alias "snR93" ; db_xref "EMBL:AJ632011 ||| PMID:15716270" ; systematic_id "SPSNORNA.45" ; gene "SPSNORNA.45" ; primary_name "snR93" ; product "small nucleolar RNA snR93" ;
chromosome2 GeneDB 3'-UTR 3173165 3173718 . - . mRNA SPBC776.02c ; ID "SPBC776.02c" ; systematic_id "SPBC776.02c" ; note "mRNA from AU012156" ;
chromosome2 GeneDB CDS_parts 3173719 3175098 . - . mRNA SPBC776.02c ; systematic_id "SPBC776.02c" ; colour "2" ; db_xref "SPD:40/40E03" ; Alias "dis2" ; synonym "sds1 ||| bws1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER133W; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; residue=THR316; qualifier=in_vitro; cv=pt_mod; db_xref=PMID:7957097; date=20090213 ||| term=target of Cdc2; qualifier=phosphorylated_by; date=20100128 ||| term=target is Chk1; qualifier=dephosphorylates|inhibits; db_xref=PMID:14765108; date=20100415" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0004721; phosphoprotein phosphatase activity
GO:0000077; DNA damage checkpoint
GO:0060629; regulation of homologous chromosome segregation
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0033047; regulation of mitotic sister chromatid segregation
GO:0006470; protein amino acid dephosphorylation
GO:0007346; regulation of progression through mitotic cell cycle
GO:0006364; rRNA processing" ; primary_name "dis2" ; product "serine/threonine protein phosphatase PP1" ; EC_number "3.1.3.16" ;
chromosome2 GeneDB CDS 3173719 3174650 . - . mRNA SPBC776.02c ; colour "2" ;
chromosome2 GeneDB CDS 3175047 3175098 . - . mRNA SPBC776.02c ; colour "2" ;
chromosome2 GeneDB misc_feature 3174651 3174664 . - . misc_feature unknown_2565 ; colour "6" ; note "ctaacttcttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3175041 3175046 . - . misc_feature unknown_2566 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3175097 3175309 . - . mRNA SPBC776.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.02c" ; systematic_id "SPBC776.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3176682 3176693 . + . mRNA SPBC776.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.03" ; systematic_id "SPBC776.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3176694 3177893 . + . mRNA SPBC776.03 ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00300; ||| SPD:19/19B11" ; systematic_id "SPBC776.03" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR139C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004412; homoserine dehydrogenase activity
GO:0009090; homoserine biosynthetic process
GO:0009086; methionine biosynthetic process
GO:0009088; threonine biosynthetic process" ; gene "SPBC776.03" ; product "homoserine dehydrogenase (predicted)" ; EC_number "1.1.1.3" ;
chromosome2 GeneDB CDS 3176694 3176733 . + . mRNA SPBC776.03 ; colour "7" ;
chromosome2 GeneDB CDS 3176803 3177893 . + . mRNA SPBC776.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 3176734 3176739 . + . misc_feature unknown_2567 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3176781 3176802 . + . misc_feature unknown_2568 ; colour "6" ; note "ctaatcacttaaaaataaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3177894 3177967 . + . mRNA SPBC776.03 ; ID "SPBC776.03" ; systematic_id "SPBC776.03" ; note "mRNA from AU013567" ;
chromosome2 GeneDB 5'-UTR 3178560 3178612 . + . mRNA SPBC776.04 ; ID "SPBC776.04" ; systematic_id "SPBC776.04" ; note "mRNA from AU010350" ;
chromosome2 GeneDB CDS_parts 3178613 3181169 . + . mRNA SPBC776.04 ; systematic_id "SPBC776.04" ; colour "2" ; gene "sec2302 ||| sec23-b ||| SPBC776.04" ; Alias "sec2302" ; db_xref "SPD:29/29D04" ; synonym "sec23-b" ; GO "GO:0005096; GTPase activator activity
GO:0008270; zinc ion binding
GO:0006886; intracellular protein transport
GO:0030127; COPII vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030433; ER-associated protein catabolism" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR181C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec2302" ; product "COPII cargo receptor subunit Sec23b (predicted)" ;
chromosome2 GeneDB CDS 3178613 3178643 . + . mRNA SPBC776.04 ; colour "2" ;
chromosome2 GeneDB CDS 3178693 3178864 . + . mRNA SPBC776.04 ; colour "2" ;
chromosome2 GeneDB CDS 3178914 3178945 . + . mRNA SPBC776.04 ; colour "2" ;
chromosome2 GeneDB CDS 3179107 3181169 . + . mRNA SPBC776.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 3178644 3178649 . + . misc_feature unknown_2569 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB intron 3178644 3178692 . + . intron SPBC776.04 ; systematic_id "SPBC776.04" ; note "confirmed by mRNA from AU010350" ;
chromosome2 GeneDB misc_feature 3178676 3178692 . + . misc_feature unknown_2570 ; colour "6" ; note "ctaaccttatggtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3178865 3178870 . + . misc_feature unknown_2571 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB intron 3178865 3178913 . + . intron SPBC776.04 ; systematic_id "SPBC776.04" ; note "confirmed by mRNA from AU010350" ;
chromosome2 GeneDB misc_feature 3178897 3178913 . + . misc_feature unknown_2572 ; colour "6" ; note "ctaaattattttataag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3178946 3178951 . + . misc_feature unknown_2573 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 3178946 3179106 . + . intron SPBC776.04 ; systematic_id "SPBC776.04" ; note "confirmed by mRNA from AU010350" ;
chromosome2 GeneDB misc_feature 3179089 3179106 . + . misc_feature unknown_2574 ; colour "6" ; note "ctaatatttggaacctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3181170 3181338 . + . mRNA SPBC776.04 ; ID "SPBC776.04" ; systematic_id "SPBC776.04" ; note "mRNA from AU007055" ;
chromosome2 GeneDB 5'-UTR 3181906 3182004 . + . mRNA SPBC776.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.05" ; systematic_id "SPBC776.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3182005 3183521 . + . mRNA SPBC776.05 ; db_xref "SPD:24/24F03" ; systematic_id "SPBC776.05" ; colour "7" ; GO "GO:0016020; membrane
GO:0015144; carbohydrate transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR149W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC776.05" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 3182005 3182184 . + . mRNA SPBC776.05 ; colour "7" ;
chromosome2 GeneDB CDS 3182236 3182507 . + . mRNA SPBC776.05 ; colour "7" ;
chromosome2 GeneDB CDS 3182584 3182653 . + . mRNA SPBC776.05 ; colour "7" ;
chromosome2 GeneDB CDS 3182692 3182816 . + . mRNA SPBC776.05 ; colour "7" ;
chromosome2 GeneDB CDS 3182860 3183120 . + . mRNA SPBC776.05 ; colour "7" ;
chromosome2 GeneDB CDS 3183166 3183368 . + . mRNA SPBC776.05 ; colour "7" ;
chromosome2 GeneDB CDS 3183418 3183521 . + . mRNA SPBC776.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 3182185 3182190 . + . misc_feature unknown_2575 ; colour "6" ; note "gtatgt, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3182223 3182235 . + . misc_feature unknown_2576 ; colour "6" ; note "ttaatgtctgtag, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3182508 3182513 . + . misc_feature unknown_2577 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3182570 3182583 . + . misc_feature unknown_2578 ; colour "6" ; note "ttaacttaaataag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3182654 3182659 . + . misc_feature unknown_2579 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3182682 3182691 . + . misc_feature unknown_2580 ; colour "6" ; note "ctaatgtcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3182817 3182822 . + . misc_feature unknown_2581 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3182849 3182859 . + . misc_feature unknown_2582 ; colour "6" ; note "ctaatgttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3183121 3183126 . + . misc_feature unknown_2583 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3183156 3183165 . + . misc_feature unknown_2584 ; colour "6" ; note "ctaatactag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3183522 3183621 . + . mRNA SPBC776.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.05" ; systematic_id "SPBC776.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3183727 3183802 . - . mRNA SPBC776.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.06c" ; systematic_id "SPBC776.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3183803 3185599 . - . mRNA SPBC776.06c ; db_xref "SPD:36/36D09" ; systematic_id "SPBC776.06c" ; colour "7" ; GO "GO:0051666; actin cortical patch localization
GO:0030010; establishment of cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR129C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC776.06c" ; product "Arf3/6 docking factor (predicted)" ;
chromosome2 GeneDB CDS 3183803 3185599 . - . mRNA SPBC776.06c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3185598 3186148 . - . mRNA SPBC776.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.06c" ; systematic_id "SPBC776.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3186348 3186433 . + . mRNA SPBC776.07 ; ID "SPBC776.07" ; systematic_id "SPBC776.07" ; note "mRNA from AU006649" ;
chromosome2 GeneDB CDS_parts 3186434 3187362 . + . mRNA SPBC776.07 ; db_xref "SPD:13/13A02" ; systematic_id "SPBC776.07" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0009060; aerobic respiration" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL070C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC776.07" ; product "mitochondrial Mam33 family protein (predicted)" ;
chromosome2 GeneDB CDS 3186434 3186756 . + . mRNA SPBC776.07 ; colour "7" ;
chromosome2 GeneDB CDS 3186876 3187362 . + . mRNA SPBC776.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 3186757 3186762 . + . misc_feature unknown_2585 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB intron 3186757 3186875 . + . intron SPBC776.07 ; systematic_id "SPBC776.07" ; note "confirmed by mRNA from AU006649" ;
chromosome2 GeneDB misc_feature 3186863 3186875 . + . misc_feature unknown_2586 ; colour "6" ; note "ctaactactttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3187363 3187470 . + . mRNA SPBC776.07 ; ID "SPBC776.07" ; systematic_id "SPBC776.07" ; note "mRNA from SPD267" ;
chromosome2 GeneDB 3'-UTR 3187516 3187741 . - . mRNA SPBC776.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.08c" ; systematic_id "SPBC776.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3187742 3191086 . - . mRNA SPBC776.08c ; db_xref "SPD:48/48B12" ; systematic_id "SPBC776.08c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR090W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC776.08c" ; product "Nrap (predicted)" ;
chromosome2 GeneDB CDS 3187742 3190984 . - . mRNA SPBC776.08c ; colour "7" ;
chromosome2 GeneDB CDS 3191036 3191086 . - . mRNA SPBC776.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 3190985 3190996 . - . misc_feature unknown_2587 ; colour "6" ; note "ctaacaatttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3190985 3191035 . - . intron SPBC776.08c ; systematic_id "SPBC776.08c" ; note "confirmed by mRNA from AU008309" ;
chromosome2 GeneDB misc_feature 3191030 3191035 . - . misc_feature unknown_2588 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3191085 3191091 . - . mRNA SPBC776.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.08c" ; systematic_id "SPBC776.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3191310 3191547 . + . mRNA SPBC776.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.09" ; systematic_id "SPBC776.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3191548 3193102 . + . mRNA SPBC776.09 ; systematic_id "SPBC776.09" ; colour "2" ; gene "ste13 ||| SPBC776.09" ; Alias "ste13" ; db_xref "SPD:33/33B08" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005737; cytoplasm
GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0000290; deadenylation-dependent decapping
GO:0000932; cytoplasmic mRNA processing body" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDL160C; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human DDX6 ortholog; date=20100217 ||| term=phenotype, sterile; db_xref=PMID:8575018; date=20101013 ||| term=name description, STErile; db_xref=PMID:8575018; date=20101013" ; primary_name "ste13" ; product "ATP-dependent RNA helicase Ste13" ;
chromosome2 GeneDB CDS 3191548 3191655 . + . mRNA SPBC776.09 ; colour "2" ;
chromosome2 GeneDB CDS 3191702 3191751 . + . mRNA SPBC776.09 ; colour "2" ;
chromosome2 GeneDB CDS 3191803 3193102 . + . mRNA SPBC776.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 3191656 3191661 . + . misc_feature unknown_2589 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3191688 3191701 . + . misc_feature unknown_2590 ; colour "6" ; note "ttaacaattaccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3191752 3191757 . + . misc_feature unknown_2591 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3191785 3191802 . + . misc_feature unknown_2592 ; colour "6" ; note "ttgacacatggtttacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3193253 3193433 . - . mRNA SPBC776.10c ; ID "SPBC776.10c" ; systematic_id "SPBC776.10c" ; note "mRNA from AU006769" ;
chromosome2 GeneDB CDS_parts 3193434 3195569 . - . mRNA SPBC776.10c ; systematic_id "SPBC776.10c" ; colour "7" ; gene "SPBC776.10c ||| cog6" ; Alias "cog6" ; db_xref "SPD:37/37E04" ; GO "GO:0006886; intracellular protein transport
GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cog6" ; product "Golgi transport complex peripheral subunit Cog6 (predicted)" ;
chromosome2 GeneDB CDS 3193434 3194238 . - . mRNA SPBC776.10c ; colour "7" ;
chromosome2 GeneDB CDS 3194295 3195256 . - . mRNA SPBC776.10c ; colour "7" ;
chromosome2 GeneDB CDS 3195309 3195569 . - . mRNA SPBC776.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 3194239 3194255 . - . misc_feature unknown_2593 ; colour "6" ; note "ctaatactctactatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3194289 3194294 . - . misc_feature unknown_2594 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3195257 3195268 . - . misc_feature unknown_2595 ; colour "6" ; note "ctaactgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3195303 3195308 . - . misc_feature unknown_2596 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 3196491 3196937 . + . mRNA SPBC776.11 ; systematic_id "SPBC776.11" ; colour "2" ; gene "rpl2801 ||| rpl28-1 ||| SPBC776.11" ; Alias "rpl2801" ; db_xref "SPD:39/39G12" ; synonym "rpl28-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL103W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl2801" ; product "60S ribosomal protein L27/L28" ;
chromosome2 GeneDB CDS 3196491 3196937 . + . mRNA SPBC776.11 ; colour "2" ;
chromosome2 GeneDB CDS_parts 3197331 3198975 . - . mRNA SPBC776.12c ; systematic_id "SPBC776.12c" ; colour "2" ; gene "hsk1 ||| SPBC776.12c" ; Alias "hsk1" ; db_xref "SPD:40/40F05" ; GO "GO:0031431; Dbf4-dependent protein kinase complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0004674; protein serine/threonine kinase activity
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0007533; mating type switching
GO:2000045; regulation of G1/S transition of mitotic cell cycle
; regulation of centromeric sister chromatid cohesion
GO:0043111; replication fork blocking
GO:0048478; replication fork protection" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7621824; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:11027263; date=20100727 ||| term=phenotype, nuclear morphology defects; db_xref=PMID:11027263; date=20100727 ||| term=orthologous to S. cerevisiae YDL017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Dfp1; qualifier=activated_by; db_xref=PMID:10411894; date=20100415 ||| term=target is Swi6; qualifier=phosphorylates; db_xref=PMID:14625560; date=20100820 ||| term=target is Mcm2; qualifier=phosphorylates; db_xref=PMID:9705352; date=20100820" ; primary_name "hsk1" ; product "Dbf4(Dfp1)-dependent protein kinase Hsk1" ;
chromosome2 GeneDB CDS 3197331 3197779 . - . mRNA SPBC776.12c ; colour "2" ;
chromosome2 GeneDB CDS 3197843 3198688 . - . mRNA SPBC776.12c ; colour "2" ;
chromosome2 GeneDB CDS 3198747 3198975 . - . mRNA SPBC776.12c ; colour "2" ;
chromosome2 GeneDB misc_feature 3197780 3197791 . - . misc_feature unknown_2597 ; colour "6" ; note "ctaacctgccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3197837 3197842 . - . misc_feature unknown_2598 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3198689 3198701 . - . misc_feature unknown_2599 ; colour "6" ; note "ctaattcgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3198741 3198746 . - . misc_feature unknown_2600 ; colour "6" ; note "gtaaac, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3198974 3199186 . - . mRNA SPBC776.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.12c" ; systematic_id "SPBC776.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3200116 3200137 . + . mRNA SPBC776.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.13" ; systematic_id "SPBC776.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3200138 3203775 . + . mRNA SPBC776.13 ; systematic_id "SPBC776.13" ; colour "2" ; gene "cnd1 ||| SPBC776.13" ; Alias "cnd1" ; db_xref "SPD:49/49G08" ; GO "GO:0000796; condensin complex
GO:0005737; cytoplasm
GO:0000939; inner kinetochore of condensed chromosome
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0007076; mitotic chromosome condensation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10485849; date=19700101 ||| term=phenotype, cut; qualifier=deletion; db_xref=PMID:10485849; date=20100917 ||| term=orthologous to S. cerevisiae YLR272C; date=19700101 ||| term=human NCAPD2 ortholog; date=20080602 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cnd1" ; product "condensin complex non-SMC subunit Cnd1" ;
chromosome2 GeneDB CDS 3200138 3200252 . + . mRNA SPBC776.13 ; colour "2" ;
chromosome2 GeneDB CDS 3200323 3200401 . + . mRNA SPBC776.13 ; colour "2" ;
chromosome2 GeneDB CDS 3200493 3203775 . + . mRNA SPBC776.13 ; colour "2" ;
chromosome2 GeneDB misc_feature 3200253 3200258 . + . misc_feature unknown_2601 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3200305 3200322 . + . misc_feature unknown_2602 ; colour "6" ; note "ctaacaatgaaaaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3200402 3200407 . + . misc_feature unknown_2603 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3200475 3200492 . + . misc_feature unknown_2604 ; colour "6" ; note "ctaacaataatggtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3203776 3203860 . + . mRNA SPBC776.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.13" ; systematic_id "SPBC776.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3204448 3206759 . + . mRNA SPBC776.14 ; systematic_id "SPBC776.14" ; colour "2" ; gene "plh1 ||| SPBC776.14" ; Alias "plh1" ; db_xref "SPD:49/49E01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR008W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pombe LRO 1 Homolog; db_xref=PMID:12963726; date=20100607" ; GO "GO:0046027; phospholipid:diacylglycerol acyltransferase activity
GO:0019432; triacylglycerol biosynthesis
GO:0046339; diacylglycerol metabolism
GO:0019915; sequestering of lipid
GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplarmic reticulum membrane" ; primary_name "plh1" ; product "phospholipid-diacylglycerol acyltransferase Plh1" ; EC_number "2.3.1.158" ;
chromosome2 GeneDB CDS 3204448 3205431 . + . mRNA SPBC776.14 ; colour "2" ;
chromosome2 GeneDB CDS 3205477 3205568 . + . mRNA SPBC776.14 ; colour "2" ;
chromosome2 GeneDB CDS 3205673 3205700 . + . mRNA SPBC776.14 ; colour "2" ;
chromosome2 GeneDB CDS 3205749 3205811 . + . mRNA SPBC776.14 ; colour "2" ;
chromosome2 GeneDB CDS 3205872 3206111 . + . mRNA SPBC776.14 ; colour "2" ;
chromosome2 GeneDB CDS 3206153 3206299 . + . mRNA SPBC776.14 ; colour "2" ;
chromosome2 GeneDB CDS 3206345 3206551 . + . mRNA SPBC776.14 ; colour "2" ;
chromosome2 GeneDB CDS 3206601 3206668 . + . mRNA SPBC776.14 ; colour "2" ;
chromosome2 GeneDB CDS 3206717 3206759 . + . mRNA SPBC776.14 ; colour "2" ;
chromosome2 GeneDB misc_feature 3205432 3205437 . + . misc_feature unknown_2605 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3205462 3205476 . + . misc_feature unknown_2606 ; colour "6" ; note "ctaacttttgaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3205569 3205574 . + . misc_feature unknown_2607 ; colour "6" ; note "gttaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3205657 3205672 . + . misc_feature unknown_2608 ; colour "6" ; note "ctaatttactgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3205701 3205706 . + . misc_feature unknown_2609 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3205735 3205748 . + . misc_feature unknown_2610 ; colour "6" ; note "ctaacttttaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3205812 3205817 . + . misc_feature unknown_2611 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3205861 3205871 . + . misc_feature unknown_2612 ; colour "6" ; note "ttaatatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3206112 3206117 . + . misc_feature unknown_2613 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3206140 3206152 . + . misc_feature unknown_2614 ; colour "6" ; note "ctaacccaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3206300 3206305 . + . misc_feature unknown_2615 ; colour "6" ; note "gtgaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3206329 3206344 . + . misc_feature unknown_2616 ; colour "6" ; note "ttaactgttttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3206552 3206557 . + . misc_feature unknown_2617 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3206584 3206600 . + . misc_feature unknown_2618 ; colour "6" ; note "ctaactcttgaaataag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3206669 3206674 . + . misc_feature unknown_2619 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3206705 3206716 . + . misc_feature unknown_2620 ; colour "6" ; note "ctaaccgaacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3206712 3206868 . - . mRNA SPBC776.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.15c" ; systematic_id "SPBC776.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3206760 3206768 . + . mRNA SPBC776.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.14" ; systematic_id "SPBC776.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3206869 3208579 . - . mRNA SPBC776.15c ; systematic_id "SPBC776.15c" ; colour "7" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00310; ||| SPD:49/49B05" ; Alias "kgd2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, lactic acidosis; date=20060920 ||| term=orthologous to S. cerevisiae YDR148C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, lipoylated; attribution=pers. comm. J. Stolz; date=20100304" ; GO "GO:0006103; 2-oxoglutarate metabolism
GO:0006099; tricarboxylic acid cycle
GO:0004149; dihydrolipoyllysine-residue succinyltransferase activity
GO:0009353; oxoglutarate dehydrogenase complex (sensu Eukaryota)
GO:0042645; mitochondrial nucleoid" ; primary_name "kgd2" ; product "dihydrolipoamide S-succinyltransferase, e2 component of oxoglutarate dehydrogenase complex Kdg2 (predicted)" ; EC_number "2.3.1.61" ;
chromosome2 GeneDB CDS 3206869 3208034 . - . mRNA SPBC776.15c ; colour "7" ;
chromosome2 GeneDB CDS 3208095 3208166 . - . mRNA SPBC776.15c ; colour "7" ;
chromosome2 GeneDB CDS 3208459 3208579 . - . mRNA SPBC776.15c ; colour "7" ;
chromosome2 GeneDB misc_feature 3208035 3208051 . - . misc_feature unknown_2621 ; colour "6" ; note "ctgacttttgttgatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3208035 3208094 . - . intron SPBC776.15c ; systematic_id "SPBC776.15c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3208089 3208094 . - . misc_feature unknown_2622 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3208167 3208182 . - . misc_feature unknown_2623 ; colour "6" ; note "ttaactatatttttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3208167 3208458 . - . intron SPBC776.15c ; systematic_id "SPBC776.15c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3208453 3208458 . - . misc_feature unknown_2624 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3208580 3208717 . - . mRNA SPBC776.15c ; ID "SPBC776.15c" ; systematic_id "SPBC776.15c" ; note "mRNA from AU007667" ;
chromosome2 GeneDB tRNA 3209139 3209217 . - . tRNA SPBTRNALEU.09 ; systematic_id "SPBTRNALEU.09" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033444; AAG codon-amino acid adaptor activity" ; gene "SPBTRNALEU.09" ; product "tRNA Leucine" ; note "tRNA Leu anticodon AAG" ;
chromosome2 GeneDB 5'-UTR 3209902 3210021 . + . mRNA SPBC776.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.16" ; systematic_id "SPBC776.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3210022 3210783 . + . mRNA SPBC776.16 ; db_xref "SPD:41/41F02" ; systematic_id "SPBC776.16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC776.16" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3210022 3210783 . + . mRNA SPBC776.16 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 3210784 3210844 . + . mRNA SPBC776.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.16" ; systematic_id "SPBC776.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3211337 3211352 . + . mRNA SPBC776.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.17" ; systematic_id "SPBC776.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3211353 3212117 . + . mRNA SPBC776.17 ; db_xref "SPD:41/41F03" ; systematic_id "SPBC776.17" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC776.17" ; product "rRNA processing protein Rrp7 (predicted)" ;
chromosome2 GeneDB CDS 3211353 3212117 . + . mRNA SPBC776.17 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3212118 3212155 . + . mRNA SPBC776.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.17" ; systematic_id "SPBC776.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3212323 3212330 . - . mRNA SPBC776.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.18c" ; systematic_id "SPBC776.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3212331 3213550 . - . mRNA SPBC776.18c ; systematic_id "SPBC776.18c" ; colour "2" ; gene "pmh1 ||| mcr1 ||| SPBC776.18c" ; Alias "pmh1" ; db_xref "SPD:50/50D12" ; synonym "mcr1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDR460W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15829570; date=20090110 ||| term=name description, Mitotic Catastrophe Suppressor; date=20100825 ||| term=human MNAT1 ortholog; date=20110113" ; GO "GO:0000112; nucleotide-excision repair factor 3 complex
GO:0005675; transcription factor TFIIH complex
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006289; nucleotide-excision repair
GO:0016567; protein ubiquitination
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0006367; transcription initiation from RNA polymerase II promoter" ; primary_name "pmh1" ; product "transcription factor TFIIH complex subunit Pmh1" ;
chromosome2 GeneDB CDS 3212331 3212472 . - . mRNA SPBC776.18c ; colour "2" ;
chromosome2 GeneDB CDS 3212528 3212996 . - . mRNA SPBC776.18c ; colour "2" ;
chromosome2 GeneDB CDS 3213042 3213115 . - . mRNA SPBC776.18c ; colour "2" ;
chromosome2 GeneDB CDS 3213166 3213305 . - . mRNA SPBC776.18c ; colour "2" ;
chromosome2 GeneDB CDS 3213367 3213470 . - . mRNA SPBC776.18c ; colour "2" ;
chromosome2 GeneDB CDS 3213523 3213550 . - . mRNA SPBC776.18c ; colour "2" ;
chromosome2 GeneDB misc_feature 3212473 3212488 . - . misc_feature unknown_2625 ; colour "6" ; note "ctaacaactcgattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3212522 3212527 . - . misc_feature unknown_2626 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3212997 3213013 . - . misc_feature unknown_2627 ; colour "6" ; note "ttaacaattttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3213036 3213041 . - . misc_feature unknown_2628 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3213116 3213132 . - . misc_feature unknown_2629 ; colour "6" ; note "ctaacgtgcgtttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3213160 3213165 . - . misc_feature unknown_2630 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3213306 3213316 . - . misc_feature unknown_2631 ; colour "6" ; note "ctaattcatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3213361 3213366 . - . misc_feature unknown_2632 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3213471 3213487 . - . misc_feature unknown_2633 ; colour "6" ; note "ctgaccgagacatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3213517 3213522 . - . misc_feature unknown_2634 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3213549 3213702 . - . mRNA SPBC776.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC776.18c" ; systematic_id "SPBC776.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3214247 3214270 . + . mRNA SPBC21.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21.01" ; systematic_id "SPBC21.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3214271 3215685 . + . mRNA SPBC21.01 ; systematic_id "SPBC21.01" ; colour "2" ; gene "mis17 ||| SPBC776.19 ||| SPBC21.01" ; Alias "mis17" ; db_xref "SPD:50/50F10" ; synonym "SPBC776.19" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0000778; condensed chromosome kinetochore
GO:0031055; chromatin remodeling at centromere
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0031511; Mis6-Sim4 complex
GO:0051382; kinetochore assembly
GO:0005634; nucleus
GO:0034080; DNA replication-independent nucleosome assembly at centromere" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=region; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis17" ; product "kinetochore protein Mis17" ;
chromosome2 GeneDB CDS 3214271 3214329 . + . mRNA SPBC21.01 ; colour "2" ;
chromosome2 GeneDB CDS 3214370 3215429 . + . mRNA SPBC21.01 ; colour "2" ;
chromosome2 GeneDB CDS 3215479 3215685 . + . mRNA SPBC21.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 3214285 3214407 . + . misc_feature unknown_2635 ; note "nominal overlap with cosmid SPBC21 and cosmid SPBC776" ;
chromosome2 GeneDB misc_feature 3214330 3214335 . + . misc_feature unknown_2636 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3214357 3214369 . + . misc_feature unknown_2637 ; colour "6" ; note "ttaaccaatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3215430 3215435 . + . misc_feature unknown_2638 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3215465 3215478 . + . misc_feature unknown_2639 ; colour "6" ; note "ctaacttaatatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3215686 3215895 . + . mRNA SPBC21.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21.01" ; systematic_id "SPBC21.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3216269 3217913 . + . mRNA SPBC21.02 ; db_xref "SPD:34/34E12" ; systematic_id "SPBC21.02" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC21.02" ; product "TLDc domain protein 2" ;
chromosome2 GeneDB CDS 3216269 3216389 . + . mRNA SPBC21.02 ; colour "10" ;
chromosome2 GeneDB CDS 3216442 3216502 . + . mRNA SPBC21.02 ; colour "10" ;
chromosome2 GeneDB CDS 3216560 3217913 . + . mRNA SPBC21.02 ; colour "10" ;
chromosome2 GeneDB misc_feature 3216390 3216395 . + . misc_feature unknown_2640 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3216423 3216441 . + . misc_feature unknown_2641 ; colour "6" ; note "ctaatgatttaataaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3216503 3216508 . + . misc_feature unknown_2642 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3216542 3216559 . + . misc_feature unknown_2643 ; colour "6" ; note "ctaacaaaggtgctttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3217914 3218764 . + . mRNA SPBC21.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21.02" ; systematic_id "SPBC21.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3217985 3218947 . - . mRNA SPBC21.03c ; db_xref "SPD:13/13F09" ; systematic_id "SPBC21.03c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human THYN1 ortholog; date=20100301" ; gene "SPBC21.03c" ; product "DUF55 family protein" ; note "NOTE this is s-adenosyl l-homocysteinhydrolase in bacteria ||| splicing may be incorrect" ;
chromosome2 GeneDB CDS 3217985 3218424 . - . mRNA SPBC21.03c ; colour "10" ;
chromosome2 GeneDB CDS 3218462 3218491 . - . mRNA SPBC21.03c ; colour "10" ;
chromosome2 GeneDB CDS 3218580 3218651 . - . mRNA SPBC21.03c ; colour "10" ;
chromosome2 GeneDB CDS 3218704 3218947 . - . mRNA SPBC21.03c ; colour "10" ;
chromosome2 GeneDB misc_feature 3218425 3218437 . - . misc_feature unknown_2644 ; colour "6" ; note "ttaacagttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3218492 3218506 . - . misc_feature unknown_2645 ; colour "6" ; note "ctaactatcttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3218687 3218692 . - . misc_feature unknown_2646 ; colour "6" ; note "gttatt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3219420 3219603 . + . mRNA SPBC21.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21.04" ; systematic_id "SPBC21.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3219604 3220343 . + . mRNA SPBC21.04 ; systematic_id "SPBC21.04" ; colour "2" ; gene "med8 ||| sep15 ||| SPBC21.04" ; Alias "med8" ; db_xref "SPD:43/43A10" ; synonym "sep15" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0016592; mediator complex
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0006366; transcription from RNA polymerase II promoter
; protein binding
GO:0000920; cell separation during cytokinesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; cv=phenotype; db_xref=PMID:11191205; date=19700101 ||| term=phenotype, pleiotropic effects; cv=phenotype; date=19700101 ||| term=phenotype, septation defects; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=phenotype, septation defects; allele=med8-del-107-200; db_xref=PMID:19720063; cv=phenotype; date=20091204 ||| term=phenotype, septation defects; allele=sep15-598; db_xref=PMID:11191205; cv=phenotype; date=20091204 ||| term=phenotype, sensitive to zinc; db_xref=PMID:19720063; allele=med8-del-107-200; cv=phenotype; date=20091204 ||| term=phenotype, sensitive to caffeine; db_xref=PMID:19720063; allele=med8-del-107-200; cv=phenotype; date=20091204 ||| term=phenotype, cell morphology, elongated and multiseptate; allele=sep15-598; db_xref=PMID:11191205; date=20100731 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17922236; date=20090110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15829570; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=orthologous to S. cerevisiae YBR193C; date=19700101" ; primary_name "med8" ; product "mediator complex subunit Med8" ;
chromosome2 GeneDB CDS 3219604 3219731 . + . mRNA SPBC21.04 ; colour "2" ;
chromosome2 GeneDB CDS 3219869 3220343 . + . mRNA SPBC21.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 3219732 3219737 . + . misc_feature unknown_2647 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3219852 3219868 . + . misc_feature unknown_2648 ; colour "6" ; note "ctaatatttatacacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3219965 3220345 . - . mRNA SPBC21.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21.05c" ; systematic_id "SPBC21.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3220344 3220571 . + . mRNA SPBC21.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21.04" ; systematic_id "SPBC21.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3220346 3222181 . - . mRNA SPBC21.05c ; systematic_id "SPBC21.05c" ; colour "2" ; gene "ral2 ||| SPBC21.05c" ; Alias "ral2" ; db_xref "SPD:33/33E05" ; GO "GO:0005737; cytoplasm
GO:0000747; conjugation with cellular fusion
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0010811; positive regulation of cell substrate adhesion
GO:0010570; regulation of filamentous growth
GO:0032488; Cdc42 protein signal tansduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kelch repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL197W; date=19700101 ||| term=pathway, Ras1-Scd; cv=pathway; date=20080718 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=BTB/POZ domain; qualifier=inferred from context; date=20090209 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706" ; primary_name "ral2" ; product "Ras1-Scd pathway protein Ral2" ;
chromosome2 GeneDB CDS 3220346 3222181 . - . mRNA SPBC21.05c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3222180 3222332 . - . mRNA SPBC21.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21.05c" ; systematic_id "SPBC21.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3222719 3222780 . - . mRNA SPBC21.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21.06c" ; systematic_id "SPBC21.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3222781 3226430 . - . mRNA SPBC21.06c ; systematic_id "SPBC21.06c" ; colour "2" ; gene "cdc7 ||| pld1 ||| its10 ||| SPBC21.06c" ; Alias "cdc7" ; db_xref "SPD:41/41A10" ; synonym "pld1 ||| its10" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0031028; septation initiation signaling
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8039497; date=20060530 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, multinucleate; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=HEAT repeat; qualifier=inferred from context; date=20060530 ||| term=orthologous to S. cerevisiae YAR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Cdc11; qualifier=phosphorylates; db_xref=PMID:12546793; date=20100820" ; primary_name "cdc7" ; product "serine/threonine protein kinase Cdc7" ;
chromosome2 GeneDB CDS 3222781 3224202 . - . mRNA SPBC21.06c ; colour "2" ;
chromosome2 GeneDB CDS 3224239 3224373 . - . mRNA SPBC21.06c ; colour "2" ;
chromosome2 GeneDB CDS 3224415 3224767 . - . mRNA SPBC21.06c ; colour "2" ;
chromosome2 GeneDB CDS 3224805 3224868 . - . mRNA SPBC21.06c ; colour "2" ;
chromosome2 GeneDB CDS 3224937 3225178 . - . mRNA SPBC21.06c ; colour "2" ;
chromosome2 GeneDB CDS 3225219 3225680 . - . mRNA SPBC21.06c ; colour "2" ;
chromosome2 GeneDB CDS 3225731 3225984 . - . mRNA SPBC21.06c ; colour "2" ;
chromosome2 GeneDB CDS 3226032 3226096 . - . mRNA SPBC21.06c ; colour "2" ;
chromosome2 GeneDB CDS 3226146 3226175 . - . mRNA SPBC21.06c ; colour "2" ;
chromosome2 GeneDB CDS 3226217 3226351 . - . mRNA SPBC21.06c ; colour "2" ;
chromosome2 GeneDB CDS 3226404 3226430 . - . mRNA SPBC21.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 3224203 3224212 . - . misc_feature unknown_2649 ; colour "6" ; note "ctaacgttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3224233 3224238 . - . misc_feature unknown_2650 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3224374 3224387 . - . misc_feature unknown_2651 ; colour "6" ; note "ttaactgacaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3224409 3224414 . - . misc_feature unknown_2652 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3224768 3224779 . - . misc_feature unknown_2653 ; colour "6" ; note "ctaattatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3224799 3224804 . - . misc_feature unknown_2654 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3224869 3224884 . - . misc_feature unknown_2655 ; colour "6" ; note "ttaaccttttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3224931 3224936 . - . misc_feature unknown_2656 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3225179 3225191 . - . misc_feature unknown_2657 ; colour "6" ; note "ctaacatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3225213 3225218 . - . misc_feature unknown_2658 ; colour "6" ; note "gtagct, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3225681 3225696 . - . misc_feature unknown_2659 ; colour "6" ; note "ctaacaatttatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3225725 3225730 . - . misc_feature unknown_2660 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3225985 3225998 . - . misc_feature unknown_2661 ; colour "6" ; note "ttaacgatatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3226026 3226031 . - . misc_feature unknown_2662 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3226097 3226109 . - . misc_feature unknown_2663 ; colour "6" ; note "ctaaacgtggtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3226140 3226145 . - . misc_feature unknown_2664 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3226176 3226189 . - . misc_feature unknown_2665 ; colour "6" ; note "ctaacaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3226211 3226216 . - . misc_feature unknown_2666 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3226352 3226364 . - . misc_feature unknown_2667 ; colour "6" ; note "ataacatattcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3226398 3226403 . - . misc_feature unknown_2668 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3226431 3226506 . - . mRNA SPBC21.06c ; ID "SPBC21.06c" ; systematic_id "SPBC21.06c" ; note "mRNA from AU010474" ;
chromosome2 GeneDB CDS_parts 3226820 3228287 . - . mRNA SPBC21.07c ; systematic_id "SPBC21.07c" ; colour "2" ; gene "ppk24 ||| SPBC21.07c" ; db_xref "SPD:23/23F05" ; Alias "ppk24" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPCC70.05C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure may be incorrect; date=20100529" ; primary_name "ppk24" ; product "serine/threonine protein kinase Ppk24" ; EC_number "2.7.1.-" ;
chromosome2 GeneDB CDS 3226820 3227271 . - . mRNA SPBC21.07c ; colour "2" ;
chromosome2 GeneDB CDS 3227354 3228287 . - . mRNA SPBC21.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 3227272 3227290 . - . misc_feature unknown_2669 ; colour "6" ; note "ctaatagttcaattgatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3227348 3227353 . - . misc_feature unknown_2670 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 3228620 3228879 . - . mRNA SPBC19F8.01c ; ID "SPBC19F8.01c" ; systematic_id "SPBC19F8.01c" ; note "mRNA from AU013457" ;
chromosome2 GeneDB CDS_parts 3228880 3230492 . - . mRNA SPBC19F8.01c ; systematic_id "SPBC19F8.01c" ; colour "2" ; db_xref "SPD:50/50H10" ; Alias "spn7" ; synonym "SPBC21.08c ||| mde8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005525; GTP binding" ; primary_name "spn7" ; product "septin Spn7" ;
chromosome2 GeneDB CDS 3228880 3229160 . - . mRNA SPBC19F8.01c ; colour "2" ;
chromosome2 GeneDB CDS 3229203 3229315 . - . mRNA SPBC19F8.01c ; colour "2" ;
chromosome2 GeneDB CDS 3229355 3229866 . - . mRNA SPBC19F8.01c ; colour "2" ;
chromosome2 GeneDB CDS 3230018 3230111 . - . mRNA SPBC19F8.01c ; colour "2" ;
chromosome2 GeneDB CDS 3230162 3230243 . - . mRNA SPBC19F8.01c ; colour "2" ;
chromosome2 GeneDB CDS 3230288 3230492 . - . mRNA SPBC19F8.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 3229161 3229173 . - . misc_feature unknown_2671 ; colour "6" ; note "ctaatgaacgcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3229161 3229202 . - . intron SPBC19F8.01c ; systematic_id "SPBC19F8.01c" ; note "confirmed intron, mRNA from AU013457" ;
chromosome2 GeneDB misc_feature 3229197 3229202 . - . misc_feature unknown_2672 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3229224 3229325 . + . misc_feature unknown_2673 ; note "nominal overlap with cosmid SPBC21 and cosmid SPBC19F8" ;
chromosome2 GeneDB misc_feature 3229316 3229327 . - . misc_feature unknown_2674 ; colour "6" ; note "ctaataagttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3229349 3229354 . - . misc_feature unknown_2675 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3229867 3229881 . - . misc_feature unknown_2676 ; colour "6" ; note "ctaacgatattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3230012 3230017 . - . misc_feature unknown_2677 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3230112 3230129 . - . misc_feature unknown_2678 ; colour "6" ; note "ctaatttcaatgcattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3230156 3230161 . - . misc_feature unknown_2679 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3230244 3230257 . - . misc_feature unknown_2680 ; colour "6" ; note "ctaactgtaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3230282 3230287 . - . misc_feature unknown_2681 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3231410 3231520 . + . mRNA SPBC19F8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F8.02" ; systematic_id "SPBC19F8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3231521 3232021 . + . mRNA SPBC19F8.02 ; db_xref "SPD:04/04H08" ; systematic_id "SPBC19F8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=CS domain; date=20071105 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC19F8.02" ; product "nuclear distribution protein NUDC homolog" ;
chromosome2 GeneDB CDS 3231521 3232021 . + . mRNA SPBC19F8.02 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 3232124 3232303 . - . mRNA SPBC19F8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F8.03c" ; systematic_id "SPBC19F8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3232304 3234299 . - . mRNA SPBC19F8.03c ; db_xref "SPD:27/27D05" ; systematic_id "SPBC19F8.03c" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0030276; clathrin binding
GO:0005546; phosphatidylinositol-4,5-bisphosphate binding
GO:0006897; endocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR241C and YHR161C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human PICALM ortholog; date=20100217 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; gene "SPBC19F8.03c" ; product "ENTH/VHS domain protein (predicted)" ;
chromosome2 GeneDB CDS 3232304 3234207 . - . mRNA SPBC19F8.03c ; colour "7" ;
chromosome2 GeneDB CDS 3234254 3234299 . - . mRNA SPBC19F8.03c ; colour "7" ;
chromosome2 GeneDB misc_feature 3234208 3234226 . - . misc_feature unknown_2682 ; colour "6" ; note "ttaacaacatttttaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3234248 3234253 . - . misc_feature unknown_2683 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3234298 3234431 . - . mRNA SPBC19F8.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F8.03c" ; systematic_id "SPBC19F8.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3234645 3234820 . - . mRNA SPBC19F8.04c ; ID "SPBC19F8.04c" ; systematic_id "SPBC19F8.04c" ; note "mRNA from AU008736" ;
chromosome2 GeneDB CDS_parts 3234821 3235513 . - . mRNA SPBC19F8.04c ; db_xref "SPD:08/08A12" ; systematic_id "SPBC19F8.04c" ; colour "10" ; GO "GO:0004518; nuclease activity
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL085W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20090706" ; gene "SPBC19F8.04c" ; product "nuclease" ;
chromosome2 GeneDB CDS 3234821 3235513 . - . mRNA SPBC19F8.04c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3235512 3235696 . - . mRNA SPBC19F8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F8.04c" ; systematic_id "SPBC19F8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snRNA 3236617 3237051 . + . snRNA SPSNRNA.05 ; Alias "snu5" ; db_xref "RFAM:RF00020" ; systematic_id "SPSNRNA.05" ; primary_name "snu5" ; gene "snu5 ||| SPSNRNA.05" ; product "small nuclear RNA U5" ;
chromosome2 GeneDB misc_feature 3237652 3237736 . - . misc_feature unknown_2684 ; db_xref "PMID:18488015" ; note "from solexa SPNG1784, but seems very t rich" ;
chromosome2 GeneDB 5'-UTR 3238171 3238362 . + . mRNA SPBC19F8.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F8.05" ; systematic_id "SPBC19F8.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3238363 3239019 . + . mRNA SPBC19F8.05 ; db_xref "SPD:42/42G04" ; systematic_id "SPBC19F8.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC19F8.05" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3238363 3239019 . + . mRNA SPBC19F8.05 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 3239020 3241471 . + . mRNA SPBC19F8.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F8.05" ; systematic_id "SPBC19F8.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3239223 3240947 . - . mRNA SPBC19F8.06c ; systematic_id "SPBC19F8.06c" ; colour "7" ; db_xref "SPD:35/35F07" ; Alias "meu22" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0006865; amino acid transport
GO:0016021; integral to membrane
GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu22" ; product "amino acid permease, predicted Meu22" ;
chromosome2 GeneDB CDS 3239223 3240947 . - . mRNA SPBC19F8.06c ; colour "7" ;
chromosome2 GeneDB misc_RNA 3241812 3242520 . + . misc_RNA SPNCRNA.417 ; db_xref "PMID:18488015" ; synonym "SPNG1785" ; systematic_id "SPNCRNA.417" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 3243309 3243428 . + . mRNA SPBC19F8.07 ; ID "SPBC19F8.07" ; systematic_id "SPBC19F8.07" ; note "mRNA from SPMOP1MCS" ;
chromosome2 GeneDB CDS_parts 3243429 3244436 . + . mRNA SPBC19F8.07 ; systematic_id "SPBC19F8.07" ; colour "2" ; gene "crk1 ||| mop1 ||| mcs6 ||| cdk7 ||| SPBC19F8.07" ; Alias "mcs6" ; db_xref "SPD:32/32C10" ; synonym "crk1 ||| mop1 ||| cdk7" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0008353; RNA polymerase II carboxy-terminal domain kinase activity
GO:0019912; cyclin-dependent protein kinase activating kinase activity
GO:0004693; cyclin-dependent protein kinase activity
GO:0016251; general RNA polymerase II transcription factor activity
GO:0070817; P-TEFb-cap methyltransferase complex localization
GO:0070816; RNA polymerase II CTD terminal phosphorylation
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0006468; protein amino acid phosphorylation
GO:0090039; regulation of gene-specific transcription elongation from RNA polymerase II promoter
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8557036; date=19700101 ||| term=phenotype, septation defects; cv=phenotype; db_xref=PMID:19328067; date=20090712 ||| term=orthologous to S. cerevisiae YDL108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15829570; date=20090110 ||| term=gene expression, transcriptionally regulates eng1 target genes; db_xref=PMID:19328067; cv=gene_ex; date=20090712 ||| term=gene expression, transcriptionally regulates ace2 target genes; db_xref=PMID:19328067; cv=gene_ex; date=20090712 ||| term=name description, Mitotic Catastrophe Suppressor; cv=name_description; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Rpb1; qualifier=phosphorylates; db_xref=PMID:19328067; date=20090712" ; primary_name "mcs6" ; product "cyclin-dependent protein kinase/CDK-activating kinase Mcs6" ; EC_number "2.7.11.23" ;
chromosome2 GeneDB CDS 3243429 3244436 . + . mRNA SPBC19F8.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3244437 3244568 . + . mRNA SPBC19F8.07 ; ID "SPBC19F8.07" ; systematic_id "SPBC19F8.07" ; note "mRNA from SPMOP1MCS" ;
chromosome2 GeneDB CDS_parts 3245143 3245931 . + . mRNA SPBC19F8.08 ; systematic_id "SPBC19F8.08" ; colour "7" ; gene "rps401 ||| rps4-1 ||| SPBC25H2.17c ||| SPBC19F8.08 ||| rps4" ; Alias "rps401" ; db_xref "SPD:40/40B03" ; synonym "rps4-1 ||| rps4 ||| SPBC25H2.17c" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR145C and YHR203C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps401" ; product "40S ribosomal protein S4 (predicted)" ;
chromosome2 GeneDB CDS 3245143 3245931 . + . mRNA SPBC19F8.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 3245593 3246222 . + . misc_feature unknown_2685 ; note "nominal overlap with cosmid SPBC25H2 and cosmid SPBC19F8" ;
chromosome2 GeneDB 3'-UTR 3245932 3245980 . + . mRNA SPBC19F8.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F8.08" ; systematic_id "SPBC19F8.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3246584 3248624 . + . mRNA SPBC25H2.16c ; db_xref "SPD:27/27F01" ; systematic_id "SPBC25H2.16c" ; colour "7" ; GO "GO:0006886; intracellular protein transport
GO:0006896; Golgi to vacuole transport
GO:0005802; Golgi trans face" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=GAT domain; qualifier=inferred from context; date=19700101 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YHR108W and YDR358W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC25H2.16c" ; product "adaptin (predicted)" ;
chromosome2 GeneDB CDS 3246584 3246620 . + . mRNA SPBC25H2.16c ; colour "7" ;
chromosome2 GeneDB CDS 3246658 3246745 . + . mRNA SPBC25H2.16c ; colour "7" ;
chromosome2 GeneDB CDS 3246799 3246874 . + . mRNA SPBC25H2.16c ; colour "7" ;
chromosome2 GeneDB CDS 3247125 3247362 . + . mRNA SPBC25H2.16c ; colour "7" ;
chromosome2 GeneDB CDS 3247419 3248389 . + . mRNA SPBC25H2.16c ; colour "7" ;
chromosome2 GeneDB CDS 3248433 3248624 . + . mRNA SPBC25H2.16c ; colour "7" ;
chromosome2 GeneDB misc_feature 3246621 3246626 . + . misc_feature unknown_2686 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3246648 3246657 . + . misc_feature unknown_2687 ; colour "6" ; note "ctaactgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3246746 3246751 . + . misc_feature unknown_2688 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3246776 3246798 . + . misc_feature unknown_2689 ; colour "6" ; note "ctaacgtgtttattattttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3246875 3246880 . + . misc_feature unknown_2690 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3247111 3247124 . + . misc_feature unknown_2691 ; colour "6" ; note "ctaacattttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3247363 3247368 . + . misc_feature unknown_2692 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3247406 3247418 . + . misc_feature unknown_2693 ; colour "6" ; note "ttaaccactttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3248390 3248395 . + . misc_feature unknown_2694 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 3248390 3248432 . + . intron SPBC25H2.16c ; systematic_id "SPBC25H2.16c" ; note "confirmed by EST" ;
chromosome2 GeneDB misc_feature 3248419 3248432 . + . misc_feature unknown_2695 ; colour "6" ; note "ctaaccttcaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3248625 3248732 . + . mRNA SPBC25H2.16c ; ID "SPBC25H2.16c" ; systematic_id "SPBC25H2.16c" ; note "mRNA from AU007277" ;
chromosome2 GeneDB CDS_parts 3248812 3250002 . - . mRNA SPBC25H2.15 ; db_xref "SPD:44/44A02" ; systematic_id "SPBC25H2.15" ; GO "GO:0030490; maturation of SSU-rRNA" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human PDCD2 ortholog; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; product "SSU-rRNA maturation protein Tsr4 homolog 1 (predicted)" ;
chromosome2 GeneDB CDS 3248812 3250002 . - . mRNA SPBC25H2.15 ; colour "7" ;
chromosome2 GeneDB CDS_parts 3250199 3251247 . - . mRNA SPBC25H2.14 ; systematic_id "SPBC25H2.14" ; colour "10" ; gene "SPBC25H2.14 ||| mug16" ; Alias "mug16" ; db_xref "SPD:16/16A04" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR030W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human UNC50 ortholog; date=20100727" ; primary_name "mug16" ; product "UNC-50 family protein" ;
chromosome2 GeneDB CDS 3250199 3250332 . - . mRNA SPBC25H2.14 ; colour "10" ;
chromosome2 GeneDB CDS 3250426 3250505 . - . mRNA SPBC25H2.14 ; colour "10" ;
chromosome2 GeneDB CDS 3250567 3250927 . - . mRNA SPBC25H2.14 ; colour "10" ;
chromosome2 GeneDB CDS 3250994 3250997 . - . mRNA SPBC25H2.14 ; colour "10" ;
chromosome2 GeneDB CDS 3251069 3251146 . - . mRNA SPBC25H2.14 ; colour "10" ;
chromosome2 GeneDB CDS 3251197 3251247 . - . mRNA SPBC25H2.14 ; colour "10" ;
chromosome2 GeneDB misc_feature 3250333 3250347 . - . misc_feature unknown_2696 ; colour "6" ; note "ctaacataatgatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3250420 3250425 . - . misc_feature unknown_2697 ; colour "6" ; note "gtaggc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3250506 3250519 . - . misc_feature unknown_2698 ; colour "6" ; note "ttaactttttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3250561 3250566 . - . misc_feature unknown_2699 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3250928 3250943 . - . misc_feature unknown_2700 ; colour "6" ; note "ctaacacaatttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3250988 3250993 . - . misc_feature unknown_2701 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3250998 3251011 . - . misc_feature unknown_2702 ; colour "6" ; note "ctaacgcgttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3251063 3251068 . - . misc_feature unknown_2703 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3251147 3251163 . - . misc_feature unknown_2704 ; colour "6" ; note "ttaaccttcttttaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3251191 3251196 . - . misc_feature unknown_2705 ; colour "6" ; note "gtattg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3251246 3251263 . - . mRNA SPBC25H2.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.14" ; systematic_id "SPBC25H2.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3252028 3253686 . + . misc_RNA SPNCRNA.418 ; db_xref "PMID:18488015" ; synonym "SPNG1788" ; systematic_id "SPNCRNA.418" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| region looks much shorter in affey SPNGAF66" ;
chromosome2 GeneDB 5'-UTR 3253735 3253888 . + . mRNA SPBC25H2.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.13c" ; systematic_id "SPBC25H2.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3253889 3260488 . + . mRNA SPBC25H2.13c ; systematic_id "SPBC25H2.13c" ; colour "2" ; gene "cdc20 ||| pol2 ||| SPBC25H2.13c" ; Alias "cdc20" ; db_xref "SPD:41/41B02" ; synonym "pol2" ; GO "GO:0006270; DNA replication initiation
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0003887; DNA-directed DNA polymerase activity
GO:0008622; epsilon DNA polymerase complex
GO:0000075; cell cycle checkpoint
GO:0000723; telomere maintenance
GO:0031261; DNA replication preinitiation complex
GO:0007090; regulation of S-phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL262W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705" ; primary_name "cdc20" ; product "DNA polymerase epsilon catalytic subunit a Pol2" ; EC_number "2.7.7.7" ;
chromosome2 GeneDB CDS 3253889 3260488 . + . mRNA SPBC25H2.13c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3260489 3260706 . + . mRNA SPBC25H2.13c ; ID "SPBC25H2.13c" ; systematic_id "SPBC25H2.13c" ; note "mRNA from SPD223" ;
chromosome2 GeneDB 5'-UTR 3260887 3260918 . + . mRNA SPBC25H2.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.12c" ; systematic_id "SPBC25H2.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3260919 3262804 . + . mRNA SPBC25H2.12c ; systematic_id "SPBC25H2.12c" ; colour "2" ; gene "cct7 ||| SPBC25H2.12c" ; Alias "cct7" ; db_xref "SPD:33/33E10" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cct7" ; product "chaperonin-containing T-complex eta subunit Cct7" ;
chromosome2 GeneDB CDS 3260919 3260952 . + . mRNA SPBC25H2.12c ; colour "2" ;
chromosome2 GeneDB CDS 3260995 3261418 . + . mRNA SPBC25H2.12c ; colour "2" ;
chromosome2 GeneDB CDS 3261586 3262804 . + . mRNA SPBC25H2.12c ; colour "2" ;
chromosome2 GeneDB misc_feature 3260953 3260958 . + . misc_feature unknown_2706 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3260981 3260994 . + . misc_feature unknown_2707 ; colour "6" ; note "ctaatcgtttgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3261419 3261424 . + . misc_feature unknown_2708 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3261572 3261585 . + . misc_feature unknown_2709 ; colour "6" ; note "ctaatactttacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3262805 3263087 . + . mRNA SPBC25H2.12c ; ID "SPBC25H2.12c" ; systematic_id "SPBC25H2.12c" ; note "mRNA from AU009289" ;
chromosome2 GeneDB 5'-UTR 3263306 3263376 . + . mRNA SPBC25H2.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.11c" ; systematic_id "SPBC25H2.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3263377 3266718 . + . mRNA SPBC25H2.11c ; systematic_id "SPBC25H2.11c" ; colour "2" ; gene "SPBC25H2.11c ||| spt7" ; note "exon added doesn't improve homology (insert in pairwise align, possible alternative splice)" ; Alias "spt7" ; db_xref "SPD:30/30D05" ; GO "GO:0006366; transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0000790; nuclear chromatin
GO:0016573; histone acetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human KAT2A ortholog; date=20110113 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "spt7" ; product "SAGA complex bromodomain subunit Spt7" ;
chromosome2 GeneDB CDS 3263377 3263950 . + . mRNA SPBC25H2.11c ; colour "2" ;
chromosome2 GeneDB CDS 3263992 3264191 . + . mRNA SPBC25H2.11c ; colour "2" ;
chromosome2 GeneDB CDS 3264246 3264284 . + . mRNA SPBC25H2.11c ; colour "2" ;
chromosome2 GeneDB CDS 3264337 3264438 . + . mRNA SPBC25H2.11c ; colour "2" ;
chromosome2 GeneDB CDS 3264481 3264619 . + . mRNA SPBC25H2.11c ; colour "2" ;
chromosome2 GeneDB CDS 3264667 3265910 . + . mRNA SPBC25H2.11c ; colour "2" ;
chromosome2 GeneDB CDS 3265950 3266093 . + . mRNA SPBC25H2.11c ; colour "2" ;
chromosome2 GeneDB CDS 3266137 3266351 . + . mRNA SPBC25H2.11c ; colour "2" ;
chromosome2 GeneDB CDS 3266397 3266718 . + . mRNA SPBC25H2.11c ; colour "2" ;
chromosome2 GeneDB misc_feature 3263951 3263956 . + . misc_feature unknown_2710 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3263980 3263991 . + . misc_feature unknown_2711 ; colour "6" ; note "ctaacattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3264192 3264197 . + . misc_feature unknown_2712 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3264326 3264336 . + . misc_feature unknown_2713 ; colour "6" ; note "ctaatacttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3264439 3264444 . + . misc_feature unknown_2714 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3264467 3264480 . + . misc_feature unknown_2715 ; colour "6" ; note "ttaatgttttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3264620 3264625 . + . misc_feature unknown_2716 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB intron 3264620 3264666 . + . intron SPBC25H2.11c ; systematic_id "SPBC25H2.11c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3264653 3264666 . + . misc_feature unknown_2717 ; colour "6" ; note "ttaacattttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3265911 3265916 . + . misc_feature unknown_2718 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3265937 3265949 . + . misc_feature unknown_2719 ; colour "6" ; note "ttgaccaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3266094 3266099 . + . misc_feature unknown_2720 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3266124 3266136 . + . misc_feature unknown_2721 ; colour "6" ; note "ctaaccggattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3266352 3266357 . + . misc_feature unknown_2722 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3266384 3266396 . + . misc_feature unknown_2723 ; colour "6" ; note "ctaattcattcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3266719 3266773 . + . mRNA SPBC25H2.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.11c" ; systematic_id "SPBC25H2.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3267015 3268221 . + . mRNA SPBC25H2.10c ; systematic_id "SPBC25H2.10c" ; colour "7" ; gene "SPBC25H2.10c" ; note "new gene prediction (changed N terminal exon to give different donor, and canged acceptor for 2nd exon) removed stop codon from translation, status changed from pseudo to coding (V.W 15.03.2004)" ; db_xref "SPD:52/52C10" ; GO "GO:0006400; tRNA modification
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0051392; tRNA N-acetyltransferase activity
GO:0051391; tRNA acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL232W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "tRNA acetyltransferase (predicted)" ;
chromosome2 GeneDB CDS 3267015 3267086 . + . mRNA SPBC25H2.10c ; colour "7" ;
chromosome2 GeneDB CDS 3267194 3267304 . + . mRNA SPBC25H2.10c ; colour "7" ;
chromosome2 GeneDB CDS 3267355 3267511 . + . mRNA SPBC25H2.10c ; colour "7" ;
chromosome2 GeneDB CDS 3267597 3267802 . + . mRNA SPBC25H2.10c ; colour "7" ;
chromosome2 GeneDB CDS 3267852 3267995 . + . mRNA SPBC25H2.10c ; colour "7" ;
chromosome2 GeneDB CDS 3268048 3268221 . + . mRNA SPBC25H2.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 3267133 3267138 . + . misc_feature unknown_2724 ; colour "6" ; note "gtgagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3267177 3267193 . + . misc_feature unknown_2725 ; colour "6" ; note "ctaactattaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3267305 3267310 . + . misc_feature unknown_2726 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3267341 3267354 . + . misc_feature unknown_2727 ; colour "6" ; note "ctgatgattaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3267512 3267517 . + . misc_feature unknown_2728 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3267583 3267596 . + . misc_feature unknown_2729 ; colour "6" ; note "ttaattttttgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3267803 3267808 . + . misc_feature unknown_2730 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3267842 3267851 . + . misc_feature unknown_2731 ; colour "6" ; note "ctaactccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3267996 3268001 . + . misc_feature unknown_2732 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3268026 3268047 . + . misc_feature unknown_2733 ; colour "6" ; note "ttaacaatccttttaaatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3268462 3268890 . - . mRNA SPBC25H2.09 ; ID "SPBC25H2.09" ; systematic_id "SPBC25H2.09" ; note "mRNA from AU013904" ;
chromosome2 GeneDB CDS_parts 3268891 3269379 . - . mRNA SPBC25H2.09 ; db_xref "SPD:04/04F05" ; systematic_id "SPBC25H2.09" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR011C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC25H2.09" ; product "DUF1690 family protein" ;
chromosome2 GeneDB CDS 3268891 3269379 . - . mRNA SPBC25H2.09 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3269378 3269410 . - . mRNA SPBC25H2.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.09" ; systematic_id "SPBC25H2.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3270021 3270231 . + . mRNA SPBC25H2.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.08c" ; systematic_id "SPBC25H2.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3270232 3271500 . + . mRNA SPBC25H2.08c ; systematic_id "SPBC25H2.08c" ; colour "7" ; gene "SPBC25H2.08c ||| mrs2" ; Alias "mrs2" ; db_xref "SPD:20/20C10" ; GO "GO:0015095; magnesium ion transmembraner transporter activity
GO:0045016; mitochondrial magnesium ion transport
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL060W and YOR334W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "mrs2" ; product "magnesium ion transporter Mrs2 (predicted)" ;
chromosome2 GeneDB CDS 3270232 3271500 . + . mRNA SPBC25H2.08c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3271501 3271782 . + . mRNA SPBC25H2.08c ; ID "SPBC25H2.08c" ; systematic_id "SPBC25H2.08c" ; note "mRNA from AU013547" ;
chromosome2 GeneDB 3'-UTR 3271874 3272286 . - . mRNA SPBC25H2.07 ; ID "SPBC25H2.07" ; systematic_id "SPBC25H2.07" ; note "mRNA from SPAB518" ;
chromosome2 GeneDB CDS_parts 3272287 3272703 . - . mRNA SPBC25H2.07 ; systematic_id "SPBC25H2.07" ; colour "2" ; gene "tif11 ||| SPBC25H2.07" ; Alias "tif11" ; db_xref "SPD:39/39G10" ; GO "GO:0005840; ribosome
GO:0033592; RNA annealing activity
GO:0003725; double-stranded RNA binding
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR260C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tif11" ; product "translation initiation factor eIF1A" ;
chromosome2 GeneDB CDS 3272287 3272703 . - . mRNA SPBC25H2.07 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3272702 3272715 . - . mRNA SPBC25H2.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.07" ; systematic_id "SPBC25H2.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3272930 3273811 . + . mRNA SPBC25H2.06c ; systematic_id "SPBC25H2.06c" ; colour "7" ; gene "SPBC25H2.06c ||| hfr1" ; Alias "hrf1" ; db_xref "SPD:11/11H11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL263C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030134; ER to Golgi transport vesicle
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030173; integral to Golgi membrane
GO:0005789; endoplasmic reticulum membrane
GO:0070317; negative regulation of G1 to G0 transition" ; primary_name "hrf1" ; product "COPII-coated vesicle component Hrf1 (predicted)" ; reserved_name "hrf1" ;
chromosome2 GeneDB CDS 3272930 3273811 . + . mRNA SPBC25H2.06c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3273812 3274420 . + . mRNA SPBC25H2.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.06c" ; systematic_id "SPBC25H2.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3274957 3275478 . - . mRNA SPBC25H2.05 ; systematic_id "SPBC25H2.05" ; colour "2" ; gene "egd2 ||| SPBC25H2.05 ||| nac1" ; Alias "egd2" ; obsolete_name "ucp15" ; db_xref "SPD:05/05B12" ; synonym "nac1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR193C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human NACA ortholog; date=20100217" ; GO "GO:0051083; cotranslational protein folding
GO:0005854; nascent polypeptide-associated complex
GO:0051082; unfolded protein binding
GO:0043130; ubiquitin binding
GO:0042788; polysomal ribosome" ; primary_name "egd2" ; product "nascent polypeptide-associated complex alpha subunit Egd2" ;
chromosome2 GeneDB CDS 3274957 3275478 . - . mRNA SPBC25H2.05 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3275477 3275516 . - . mRNA SPBC25H2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.05" ; systematic_id "SPBC25H2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3275681 3275858 . + . mRNA SPBC25H2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.04c" ; systematic_id "SPBC25H2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3275859 3276386 . + . mRNA SPBC25H2.04c ; systematic_id "SPBC25H2.04c" ; colour "7" ; gene "SPBC25H2.04c ||| tim22" ; Alias "tim22" ; db_xref "SPD:05/05C11" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0042721; mitochondrial inner membrane protein insertion complex
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL217C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tim22" ; product "TIM22 inner membrane protein import complex subunit Tim22 (predicted)" ;
chromosome2 GeneDB CDS 3275859 3276386 . + . mRNA SPBC25H2.04c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3276387 3276728 . + . mRNA SPBC25H2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.04c" ; systematic_id "SPBC25H2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3276674 3276686 . - . mRNA SPBC25H2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.03" ; systematic_id "SPBC25H2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3276687 3279509 . - . mRNA SPBC25H2.03 ; db_xref "SPD:29/29E07" ; systematic_id "SPBC25H2.03" ; colour "7" ; GO "GO:0006644; phospholipid metabolism
GO:0000011; vacuole inheritance
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0048015; phosphoinositide-mediated signaling
GO:0030384; phosphoinositide metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YLR386W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC25H2.03" ; product "vacuolar protein involved in phosphoinositide metabolism (predicted)" ;
chromosome2 GeneDB CDS 3276687 3277132 . - . mRNA SPBC25H2.03 ; colour "7" ;
chromosome2 GeneDB CDS 3277179 3277258 . - . mRNA SPBC25H2.03 ; colour "7" ;
chromosome2 GeneDB CDS 3277307 3277422 . - . mRNA SPBC25H2.03 ; colour "7" ;
chromosome2 GeneDB CDS 3277471 3277575 . - . mRNA SPBC25H2.03 ; colour "7" ;
chromosome2 GeneDB CDS 3277613 3279067 . - . mRNA SPBC25H2.03 ; colour "7" ;
chromosome2 GeneDB CDS 3279151 3279307 . - . mRNA SPBC25H2.03 ; colour "7" ;
chromosome2 GeneDB CDS 3279388 3279460 . - . mRNA SPBC25H2.03 ; colour "7" ;
chromosome2 GeneDB CDS 3279506 3279509 . - . mRNA SPBC25H2.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 3277133 3277145 . - . misc_feature unknown_2734 ; colour "6" ; note "ctaatgacattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3277173 3277178 . - . misc_feature unknown_2735 ; colour "6" ; note "gtgggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3277259 3277275 . - . misc_feature unknown_2736 ; colour "6" ; note "ttaacctatgtgattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3277301 3277306 . - . misc_feature unknown_2737 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3277423 3277437 . - . misc_feature unknown_2738 ; colour "6" ; note "ctaacaactgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3277465 3277470 . - . misc_feature unknown_2739 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3277576 3277587 . - . misc_feature unknown_2740 ; colour "6" ; note "ttaacatttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3277607 3277612 . - . misc_feature unknown_2741 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3279068 3279088 . - . misc_feature unknown_2742 ; colour "6" ; note "ctaattgctctatgtgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3279145 3279150 . - . misc_feature unknown_2743 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3279308 3279329 . - . misc_feature unknown_2744 ; colour "6" ; note "ttaacaacattgttcaacgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3279382 3279387 . - . misc_feature unknown_2745 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3279461 3279476 . - . misc_feature unknown_2746 ; colour "6" ; note "ctaattaaacacttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3279500 3279505 . - . misc_feature unknown_2747 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3279508 3279531 . - . mRNA SPBC25H2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.03" ; systematic_id "SPBC25H2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3279821 3279949 . - . mRNA SPBC25H2.02 ; ID "SPBC25H2.02" ; systematic_id "SPBC25H2.02" ; note "mRNA from AU010557" ;
chromosome2 GeneDB CDS_parts 3279950 3282061 . - . mRNA SPBC25H2.02 ; systematic_id "SPBC25H2.02" ; colour "7" ; gene "ths1 ||| trs1 ||| SPBC25H2.02" ; note "Has been mapped to YIL078W rather than YKL194C due to same domain combinations" ; Alias "trs1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:39/39F07" ; synonym "ths1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL078W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006435; threonyl-tRNA aminoacylation
GO:0004829; threonine-tRNA ligase activity
GO:0005737; cytoplasm" ; primary_name "trs1" ; product "cytoplasmic threonine-tRNA ligase Trs1 (predicted)" ; EC_number "6.1.1.3" ;
chromosome2 GeneDB CDS 3279950 3282061 . - . mRNA SPBC25H2.02 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3282060 3282173 . - . mRNA SPBC25H2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25H2.02" ; systematic_id "SPBC25H2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3282833 3282833 . + . misc_feature unknown_2748 ; colour "4" ; note "in c20F10, this is a C" ;
chromosome2 GeneDB misc_feature 3282833 3284177 . + . misc_feature unknown_2749 ; note "nominal overlap with cosmid SPBC20F10 and cosmid SPBC25H2" ;
chromosome2 GeneDB LTR 3282860 3283208 . - . LTR unknown_2750 ; note "TF2 type ||| Tf2-type LTR" ;
chromosome2 GeneDB 5'-UTR 3283329 3283372 . + . mRNA SPBC20F10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.01" ; systematic_id "SPBC20F10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3283373 3284083 . + . mRNA SPBC20F10.01 ; systematic_id "SPBC20F10.01" ; colour "2" ; gene "gar1 ||| SPBC25H2.01c ||| SPBC20F10.01" ; Alias "gar1" ; db_xref "SPD:31/31H02" ; synonym "SPBC25H2.01c" ; GO "GO:0003723; RNA binding
GO:0006364; 35S primary transcript processing
GO:0000154; rRNA modification
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR089C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gar1" ; product "snoRNP pseudouridylase complex protein Gar1" ;
chromosome2 GeneDB CDS 3283373 3283466 . + . mRNA SPBC20F10.01 ; colour "2" ;
chromosome2 GeneDB CDS 3283537 3283637 . + . mRNA SPBC20F10.01 ; colour "2" ;
chromosome2 GeneDB CDS 3283694 3284083 . + . mRNA SPBC20F10.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 3283467 3283472 . + . misc_feature unknown_2751 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB intron 3283467 3283536 . + . intron SPBC20F10.01 ; systematic_id "SPBC20F10.01" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3283522 3283536 . + . misc_feature unknown_2752 ; colour "6" ; note "ctgacatacctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3283638 3283643 . + . misc_feature unknown_2753 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 3283638 3283693 . + . intron SPBC20F10.01 ; systematic_id "SPBC20F10.01" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3283680 3283693 . + . misc_feature unknown_2754 ; colour "6" ; note "ctaacgtagcatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3284084 3284316 . + . mRNA SPBC20F10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.01" ; systematic_id "SPBC20F10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3284618 3286420 . - . mRNA SPBC20F10.02c ; db_xref "SPD:36/36E01" ; systematic_id "SPBC20F10.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC20F10.02c" ; product "DUF1741 family protein" ;
chromosome2 GeneDB CDS 3284618 3286420 . - . mRNA SPBC20F10.02c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3286419 3286460 . - . mRNA SPBC20F10.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.02c" ; systematic_id "SPBC20F10.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3287725 3287749 . + . mRNA SPBC20F10.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.03" ; systematic_id "SPBC20F10.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3287750 3289090 . + . mRNA SPBC20F10.03 ; db_xref "SPD:20/20G05" ; systematic_id "SPBC20F10.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=armadillo repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPBC20F10.03" ; product "conserved eukaryotic protein" ;
chromosome2 GeneDB CDS 3287750 3289090 . + . mRNA SPBC20F10.03 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 3289091 3289323 . + . mRNA SPBC20F10.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.03" ; systematic_id "SPBC20F10.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3289466 3290628 . - . mRNA SPBC20F10.04c ; systematic_id "SPBC20F10.04c" ; colour "2" ; gene "nse4 ||| rad62 ||| SPBC20F10.04c" ; Alias "nse4" ; db_xref "SPD:41/41B09" ; synonym "rad62" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15331764; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:15331764; date=20100708 ||| term=phenotype, chromosome segregation defects; date=20100708 ||| term=phenotype, sensitive to DNA damage; date=20100708 ||| term=orthologous to S. cerevisiae YDL105W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20100126" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0006302; double-strand break repair
GO:0006302; double-strand break repair
GO:0048478; replication fork protection" ; primary_name "nse4" ; product "Smc5-6 complex non-SMC subunit Nse4" ;
chromosome2 GeneDB CDS 3289466 3289558 . - . mRNA SPBC20F10.04c ; colour "2" ;
chromosome2 GeneDB CDS 3289606 3289697 . - . mRNA SPBC20F10.04c ; colour "2" ;
chromosome2 GeneDB CDS 3289743 3289962 . - . mRNA SPBC20F10.04c ; colour "2" ;
chromosome2 GeneDB CDS 3290001 3290094 . - . mRNA SPBC20F10.04c ; colour "2" ;
chromosome2 GeneDB CDS 3290138 3290396 . - . mRNA SPBC20F10.04c ; colour "2" ;
chromosome2 GeneDB CDS 3290441 3290521 . - . mRNA SPBC20F10.04c ; colour "2" ;
chromosome2 GeneDB CDS 3290565 3290628 . - . mRNA SPBC20F10.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 3289963 3289975 . - . misc_feature unknown_2755 ; colour "6" ; note "ctaactcaagaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3289995 3290000 . - . misc_feature unknown_2756 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3290095 3290107 . - . misc_feature unknown_2757 ; colour "6" ; note "ctaacctctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3290132 3290137 . - . misc_feature unknown_2758 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3290627 3290698 . - . mRNA SPBC20F10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.04c" ; systematic_id "SPBC20F10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3290915 3291031 . + . mRNA SPBC20F10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.05" ; systematic_id "SPBC20F10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3291032 3294032 . + . mRNA SPBC20F10.05 ; systematic_id "SPBC20F10.05" ; colour "7" ; gene "SPBC20F10.05 ||| nel2" ; db_xref "SPD:47/47G01" ; Alias "nrl1" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, NRde-Like; date=20101207 ||| term=human c14orf102 ortholog; date=20101210" ; GO "GO:0016246; RNA interference" ; primary_name "nrl1" ; product "NRDE-2 family, implicated in RNA interference" ; reserved_name "nrl1" ;
chromosome2 GeneDB CDS 3291032 3292872 . + . mRNA SPBC20F10.05 ; colour "7" ;
chromosome2 GeneDB CDS 3292911 3293821 . + . mRNA SPBC20F10.05 ; colour "7" ;
chromosome2 GeneDB CDS 3293866 3294032 . + . mRNA SPBC20F10.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 3292873 3292878 . + . misc_feature unknown_2759 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3292897 3292910 . + . misc_feature unknown_2760 ; colour "6" ; note "ctaaccaaattcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3293822 3293827 . + . misc_feature unknown_2761 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3293852 3293865 . + . misc_feature unknown_2762 ; colour "6" ; note "ctgactaagtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3294033 3294051 . + . mRNA SPBC20F10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.05" ; systematic_id "SPBC20F10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3294240 3294274 . + . mRNA SPBC20F10.06 ; Alias "mad2" ; ID "SPBC20F10.06" ; db_xref "EMBL:U72150" ; systematic_id "SPBC20F10.06" ; primary_name "mad2" ;
chromosome2 GeneDB CDS_parts 3294275 3294973 . + . mRNA SPBC20F10.06 ; systematic_id "SPBC20F10.06" ; colour "2" ; gene "mad2 ||| SPBC20F10.06" ; Alias "mad2" ; db_xref "SPD:40/40A08" ; GO "GO:0007094; mitotic spindle checkpoint
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005515; protein binding
GO:0033597; mitotic checkpoint complex
GO:0045841; negative regulation of mitotic metaphase/anaphase transition
GO:0010997; anaphase-promoting complex binding
GO:0060565; inhibition of anaphase promoting complex activity during the cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=orthologous to S. cerevisiae YJL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mad2" ; product "spindle checkpoint protein Mad2" ;
chromosome2 GeneDB CDS 3294275 3294344 . + . mRNA SPBC20F10.06 ; colour "2" ;
chromosome2 GeneDB CDS 3294386 3294532 . + . mRNA SPBC20F10.06 ; colour "2" ;
chromosome2 GeneDB CDS 3294579 3294973 . + . mRNA SPBC20F10.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 3294345 3294350 . + . misc_feature unknown_2763 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3294372 3294385 . + . misc_feature unknown_2764 ; colour "6" ; note "ctaacttaatgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3294533 3294538 . + . misc_feature unknown_2765 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB intron 3294533 3294578 . + . intron SPBC20F10.06 ; Alias "mad2" ; db_xref "EMBL:U72150" ; systematic_id "SPBC20F10.06" ; primary_name "mad2" ; note "intron confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 3294564 3294578 . + . misc_feature unknown_2766 ; colour "6" ; note "ttaacaaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3294974 3295184 . + . mRNA SPBC20F10.06 ; Alias "mad2" ; ID "SPBC20F10.06" ; db_xref "EMBL:U72150" ; systematic_id "SPBC20F10.06" ; primary_name "mad2" ;
chromosome2 GeneDB misc_RNA 3295176 3295428 . - . misc_RNA SPNCRNA.04 ; systematic_id "SPNCRNA.04" ; gene "prl04 ||| prl4 ||| SPNCRNA.04" ; db_xref "PMID:12597277 ||| EMBL:AB084816" ; Alias "prl4" ; synonym "prl04" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl4" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB 5'-UTR 3295648 3295994 . + . mRNA SPBC20F10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.07" ; systematic_id "SPBC20F10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3295995 3298289 . + . mRNA SPBC20F10.07 ; db_xref "SPD:38/38B08" ; systematic_id "SPBC20F10.07" ; colour "10" ; GO "GO:0016020; membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GRAM domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR072W and YFL042C and YHR080C and YDR326C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC20F10.07" ; product "GRAM domain protein" ;
chromosome2 GeneDB CDS 3295995 3298289 . + . mRNA SPBC20F10.07 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 3298290 3298451 . + . mRNA SPBC20F10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.07" ; systematic_id "SPBC20F10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3298455 3298582 . - . mRNA SPBC20F10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.08c" ; systematic_id "SPBC20F10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3298583 3300826 . - . mRNA SPBC20F10.08c ; db_xref "SPD:28/28A09" ; systematic_id "SPBC20F10.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YMR185W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TMCO7 ortholog; date=20100728" ; colour "10" ; gene "SPBC20F10.08c" ; product "conserved eukaryotic protein" ;
chromosome2 GeneDB CDS 3298583 3300826 . - . mRNA SPBC20F10.08c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3300825 3301258 . - . mRNA SPBC20F10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.08c" ; systematic_id "SPBC20F10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3301304 3301741 . + . mRNA SPBC20F10.09 ; systematic_id "SPBC20F10.09" ; colour "7" ; gene "lsm5 ||| SPBC20F10.09" ; Alias "lsm5" ; db_xref "SPD:03/03G06" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005688; snRNP U6
GO:0003723; RNA binding
GO:0006402; mRNA catabolism
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER146W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsm5" ; product "U6 snRNP-associated protein Lsm5 (predicted)" ;
chromosome2 GeneDB CDS 3301304 3301328 . + . mRNA SPBC20F10.09 ; colour "7" ;
chromosome2 GeneDB CDS 3301430 3301553 . + . mRNA SPBC20F10.09 ; colour "7" ;
chromosome2 GeneDB CDS 3301600 3301666 . + . mRNA SPBC20F10.09 ; colour "7" ;
chromosome2 GeneDB CDS 3301715 3301741 . + . mRNA SPBC20F10.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 3301329 3301334 . + . misc_feature unknown_2767 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3301419 3301429 . + . misc_feature unknown_2768 ; colour "6" ; note "ctaacaagcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3301554 3301559 . + . misc_feature unknown_2769 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3301585 3301599 . + . misc_feature unknown_2770 ; colour "6" ; note "ctaatttctatgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3301667 3301672 . + . misc_feature unknown_2771 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3301703 3301714 . + . misc_feature unknown_2772 ; colour "6" ; note "ctaactatctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3301742 3302081 . + . mRNA SPBC20F10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.09" ; systematic_id "SPBC20F10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3303292 3303305 . + . mRNA SPBC20F10.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC20F10.10" ; systematic_id "SPBC20F10.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3303306 3304037 . + . mRNA SPBC20F10.10 ; systematic_id "SPBC20F10.10" ; colour "7" ; gene "SPBC20F10.10 ||| psl1" ; Alias "psl1" ; db_xref "SPD:08/08G10" ; GO "GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0000307; cyclin-dependent protein kinase holoenzyme complex
GO:0000079; regulation of cyclin-dependent protein kinase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YER059W and YIL050W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Pcl-Seven like Cyclin; date=20100702" ; primary_name "psl1" ; product "cyclin pho85 family (predicted)" ; reserved_name "psl1" ;
chromosome2 GeneDB CDS 3303306 3304037 . + . mRNA SPBC20F10.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 3304133 3305832 . + . misc_feature unknown_2773 ; note "nominal overlap with cosmid SPBC17D11 and cosmid SPBC20F10" ;
chromosome2 GeneDB 5'-UTR 3304727 3304836 . + . mRNA SPBC17D11.01 ; ID "SPBC17D11.01" ; systematic_id "SPBC17D11.01" ; note "mRNA from SPD156" ;
chromosome2 GeneDB CDS_parts 3304837 3306253 . + . mRNA SPBC17D11.01 ; systematic_id "SPBC17D11.01" ; colour "2" ; gene "nep1 ||| SPBC17D11.01" ; Alias "nep1" ; obsolete_name "SPBC20F10.11" ; db_xref "SPD:21/21G11" ; GO "GO:0005737; cytoplasm
GO:0008180; signalosome complex
GO:0019784; NEDD8-specific protease activity
GO:0005515; protein binding
GO:0000338; protein deneddylation
GO:0000338; protein deneddylation
GO:0016926; protein desumoylation
GO:0016925; protein sumoylation
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, target does not appear to be only cullins; db_xref=PMID:15769255; date=20050321 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15769255; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, sensitive to N- ethylmaleimide; db_xref=PMID:15769255; date=20100309 ||| term=target is Pcu1; db_xref=PMID:15769255; date=20100309 ||| term=target is Pcu3; db_xref=PMID:15769255; date=20100309 ||| term=target is Pcu4; db_xref=PMID:15769255; date=20100309" ; primary_name "nep1" ; product "NEDD8 protease Nep1" ;
chromosome2 GeneDB CDS 3304837 3304864 . + . mRNA SPBC17D11.01 ; colour "2" ;
chromosome2 GeneDB CDS 3304945 3304999 . + . mRNA SPBC17D11.01 ; colour "2" ;
chromosome2 GeneDB CDS 3305074 3306253 . + . mRNA SPBC17D11.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 3304865 3304870 . + . misc_feature unknown_2774 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 3304865 3304944 . + . intron SPBC17D11.01 ; systematic_id "SPBC17D11.01" ; note "intron confirmed by EST" ;
chromosome2 GeneDB misc_feature 3304927 3304944 . + . misc_feature unknown_2775 ; colour "6" ; note "ctaacttgtgctattaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3305000 3305005 . + . misc_feature unknown_2776 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB intron 3305000 3305073 . + . intron SPBC17D11.01 ; systematic_id "SPBC17D11.01" ; note "intron confirmed by EST" ;
chromosome2 GeneDB misc_feature 3305060 3305073 . + . misc_feature unknown_2777 ; colour "6" ; note "ttaatacaagctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3306254 3306572 . + . mRNA SPBC17D11.01 ; ID "SPBC17D11.01" ; systematic_id "SPBC17D11.01" ; note "mRNA from SPD156" ;
chromosome2 GeneDB CDS_parts 3306554 3308630 . - . mRNA SPBC17D11.02c ; systematic_id "SPBC17D11.02c" ; colour "2" ; gene "SPBC17D11.02c ||| hrd1" ; Alias "hrd1" ; db_xref "SPD:46/46E04" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination
GO:0030433; ER-associated protein catabolic process
GO:0010620; negative regulation of transcription by transcription factor catabolism
GO:0005515; protein binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060726 ||| term=orthologous to S. cerevisiae YOL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SYVN1 ortholog; date=20091119 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20091119 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Sre1; db_xref=PMID:19520858; date=20100308" ; primary_name "hrd1" ; product "ubiquitin-protein ligase Hrd1, synviolin family" ; reserved_name "hrd1" ;
chromosome2 GeneDB CDS 3306554 3308563 . - . mRNA SPBC17D11.02c ; colour "2" ;
chromosome2 GeneDB CDS 3308607 3308630 . - . mRNA SPBC17D11.02c ; colour "2" ;
chromosome2 GeneDB misc_feature 3308564 3308577 . - . misc_feature unknown_2778 ; colour "6" ; note "ctaatcttgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3308601 3308606 . - . misc_feature unknown_2779 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 3309213 3309376 . - . mRNA SPBC17D11.03c ; ID "SPBC17D11.03c" ; systematic_id "SPBC17D11.03c" ; note "mRNA from AU012571" ;
chromosome2 GeneDB CDS_parts 3309377 3310194 . - . mRNA SPBC17D11.03c ; db_xref "SPD:10/10E07" ; systematic_id "SPBC17D11.03c" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR111C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPBC17D11.03c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 3309377 3309627 . - . mRNA SPBC17D11.03c ; colour "10" ;
chromosome2 GeneDB CDS 3309708 3309888 . - . mRNA SPBC17D11.03c ; colour "10" ;
chromosome2 GeneDB CDS 3309985 3310194 . - . mRNA SPBC17D11.03c ; colour "10" ;
chromosome2 GeneDB misc_feature 3309628 3309640 . - . misc_feature unknown_2780 ; colour "6" ; note "ctaactcttaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3309702 3309707 . - . misc_feature unknown_2781 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3309889 3309903 . - . misc_feature unknown_2782 ; colour "6" ; note "ctaacaaattaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3309979 3309984 . - . misc_feature unknown_2783 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3310193 3310223 . - . mRNA SPBC17D11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D11.03c" ; systematic_id "SPBC17D11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3310495 3310576 . - . mRNA SPBC17D11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D11.04c" ; systematic_id "SPBC17D11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3310577 3312880 . - . mRNA SPBC17D11.04c ; systematic_id "SPBC17D11.04c" ; colour "7" ; gene "SPBC17D11.04c" ; Alias "nto1" ; db_xref "SPD:38/38B12" ; GO "GO:0000123; histone acetyltransferase complex
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0016573; histone acetylation
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YPR031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nto1" ; product "histone acetyltransferase complex subunit Nto1 (predicted)" ;
chromosome2 GeneDB CDS 3310577 3312880 . - . mRNA SPBC17D11.04c ; colour "7" ;
chromosome2 GeneDB misc_RNA 3313372 3313800 . + . misc_RNA SPNCRNA.36 ; Alias "prl36" ; db_xref "PMID:12597277 ||| EMBL:AB084848" ; systematic_id "SPNCRNA.36" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl36" ; gene "prl36 ||| SPNCRNA.36" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB CDS_parts 3314338 3317181 . + . mRNA SPBC17D11.05 ; systematic_id "SPBC17D11.05" ; colour "2" ; gene "tif32 ||| SPBC17D11.05" ; Alias "tif32" ; db_xref "SPD:34/34A01" ; GO "GO:0006413; translational initiation
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0016282; eukaryotic 43S preinitiation complex
GO:0005515; protein binding
GO:0070321; regulation of translation in response to nitrogen starvation
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR079C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tif32" ; product "translation initiation factor eIF3a" ;
chromosome2 GeneDB CDS 3314338 3314376 . + . mRNA SPBC17D11.05 ; colour "2" ;
chromosome2 GeneDB CDS 3314422 3317181 . + . mRNA SPBC17D11.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 3314377 3314382 . + . misc_feature unknown_2784 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3314408 3314421 . + . misc_feature unknown_2785 ; colour "6" ; note "ctaacataaattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3317182 3317452 . + . mRNA SPBC17D11.05 ; ID "SPBC17D11.05" ; systematic_id "SPBC17D11.05" ; note "mRNA from AU007272" ;
chromosome2 GeneDB CDS_parts 3317783 3319462 . + . mRNA SPBC17D11.06 ; systematic_id "SPBC17D11.06" ; colour "2" ; gene "spp2 ||| pri2 ||| SPBC17D11.06" ; Alias "spp2" ; db_xref "SPD:35/35B07" ; synonym "pri2" ; GO "GO:0005658; alpha DNA polymerase:primase complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0006269; DNA replication, synthesis of RNA primer
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:11027257; date=20100708 ||| term=phenotype, cut; qualifier=ts; db_xref=PMID:11027257; date=20100708 ||| term=orthologous to S. cerevisiae YKL045W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "spp2" ; product "DNA primase large subunit Spp2" ;
chromosome2 GeneDB CDS 3317783 3317948 . + . mRNA SPBC17D11.06 ; colour "2" ;
chromosome2 GeneDB CDS 3318007 3318202 . + . mRNA SPBC17D11.06 ; colour "2" ;
chromosome2 GeneDB CDS 3318402 3318993 . + . mRNA SPBC17D11.06 ; colour "2" ;
chromosome2 GeneDB CDS 3319037 3319462 . + . mRNA SPBC17D11.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 3317949 3317954 . + . misc_feature unknown_2786 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3317995 3318006 . + . misc_feature unknown_2787 ; colour "6" ; note "ctaactatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3318203 3318208 . + . misc_feature unknown_2788 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3318386 3318401 . + . misc_feature unknown_2789 ; colour "6" ; note "ctaacgcattcattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3318994 3318999 . + . misc_feature unknown_2790 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3319025 3319036 . + . misc_feature unknown_2791 ; colour "6" ; note "ctaatttttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3319463 3319516 . + . mRNA SPBC17D11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D11.06" ; systematic_id "SPBC17D11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3319740 3319882 . - . mRNA SPBC17D11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D11.07c" ; systematic_id "SPBC17D11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3319883 3322841 . - . mRNA SPBC17D11.07c ; systematic_id "SPBC17D11.07c" ; colour "7" ; gene "rpn2 ||| SPBC17D11.07c" ; Alias "rpn2" ; db_xref "SPD:47/47F01" ; GO "GO:0005634; nucleus
GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL075C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpn2" ; product "19S proteasome regulatory subunit Rpn2 (predicted)" ;
chromosome2 GeneDB CDS 3319883 3322734 . - . mRNA SPBC17D11.07c ; colour "7" ;
chromosome2 GeneDB CDS 3322796 3322841 . - . mRNA SPBC17D11.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 3322735 3322750 . - . misc_feature unknown_2792 ; colour "6" ; note "ctaatccttttgatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3322790 3322795 . - . misc_feature unknown_2793 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3322840 3322871 . - . mRNA SPBC17D11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D11.07c" ; systematic_id "SPBC17D11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3324029 3325599 . + . mRNA SPBC17D11.08 ; db_xref "SPD:25/25D01" ; systematic_id "SPBC17D11.08" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL247C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human DCAF7 ortholog; date=20100727" ; GO "GO:0080008; CUL4 RING ubiquitin ligase complex
GO:0016567; protein ubiquitination" ; gene "SPBC17D11.08" ; product "WD repeat protein, DDB1 and CUL4-associated factor 7 (predicted)" ;
chromosome2 GeneDB CDS 3324029 3324271 . + . mRNA SPBC17D11.08 ; colour "7" ;
chromosome2 GeneDB CDS 3324387 3324620 . + . mRNA SPBC17D11.08 ; colour "7" ;
chromosome2 GeneDB CDS 3324661 3324902 . + . mRNA SPBC17D11.08 ; colour "7" ;
chromosome2 GeneDB CDS 3324967 3325524 . + . mRNA SPBC17D11.08 ; colour "7" ;
chromosome2 GeneDB CDS 3325569 3325599 . + . mRNA SPBC17D11.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 3324272 3324277 . + . misc_feature unknown_2794 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3324367 3324386 . + . misc_feature unknown_2795 ; colour "6" ; note "ctaaccaaaaaattgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3324621 3324626 . + . misc_feature unknown_2796 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3324649 3324660 . + . misc_feature unknown_2797 ; colour "6" ; note "ctaatgttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3324903 3324908 . + . misc_feature unknown_2798 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3324953 3324966 . + . misc_feature unknown_2799 ; colour "6" ; note "ttaactttctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3325525 3325530 . + . misc_feature unknown_2800 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB intron 3325525 3325568 . + . intron SPBC17D11.08 ; systematic_id "SPBC17D11.08" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3325552 3325568 . + . misc_feature unknown_2801 ; colour "6" ; note "ttaacatctttttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3325600 3326011 . + . mRNA SPBC17D11.08 ; ID "SPBC17D11.08" ; systematic_id "SPBC17D11.08" ; note "mRNA from AU013721" ;
chromosome2 GeneDB misc_feature 3326562 3329132 . + . misc_feature unknown_2802 ; note "nominal overlap with cosmid SPBC17D1 and cosmid SPBC17D11" ;
chromosome2 GeneDB 5'-UTR 3326725 3326991 . + . mRNA SPBC17D1.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.01" ; systematic_id "SPBC17D1.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3326992 3328913 . + . mRNA SPBC17D1.01 ; systematic_id "SPBC17D1.01" ; colour "7" ; gene "SPBC17D11.09 ||| SPBC17D1.01" ; Alias "SPBC17D11.09" ; db_xref "SPD:37/37A07" ; synonym "SPBC17D11.09" ; GO "GO:0000122; negative regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR464W; date=20080901 ||| term=HMG box; qualifier=inferred from context; date=20080901 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPBC17D11.09" ; product "transcriptional regulatory protein Spp41 (predicted)" ;
chromosome2 GeneDB CDS 3326992 3327046 . + . mRNA SPBC17D1.01 ; colour "7" ;
chromosome2 GeneDB CDS 3327094 3327476 . + . mRNA SPBC17D1.01 ; colour "7" ;
chromosome2 GeneDB CDS 3327597 3328913 . + . mRNA SPBC17D1.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 3327047 3327052 . + . misc_feature unknown_2803 ; colour "6" ; note "gtgaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3327078 3327093 . + . misc_feature unknown_2804 ; colour "6" ; note "ttaacgattcatgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3327477 3327482 . + . misc_feature unknown_2805 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3327580 3327596 . + . misc_feature unknown_2806 ; colour "6" ; note "ctgactattatatgaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3328914 3329473 . + . mRNA SPBC17D1.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.01" ; systematic_id "SPBC17D1.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3329800 3329818 . + . mRNA SPBC17D1.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.02" ; systematic_id "SPBC17D1.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3329819 3331496 . + . mRNA SPBC17D1.02 ; systematic_id "SPBC17D1.02" ; colour "7" ; gene "SPBC17D1.02" ; Alias "dph2" ; db_xref "SPD:35/35B04" ; GO "GO:0017183; peptidyl-diphthamide biosynthesis from peptidyl-histidine
GO:0005737; cytoplasm
GO:0006417; regulation of translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human DPH2 ortholog; date=20100120" ; primary_name "dph2" ; product "diphthamide biosynthesis protein (predicted)" ;
chromosome2 GeneDB CDS 3329819 3329977 . + . mRNA SPBC17D1.02 ; colour "7" ;
chromosome2 GeneDB CDS 3330050 3330240 . + . mRNA SPBC17D1.02 ; colour "7" ;
chromosome2 GeneDB CDS 3330289 3330967 . + . mRNA SPBC17D1.02 ; colour "7" ;
chromosome2 GeneDB CDS 3331014 3331496 . + . mRNA SPBC17D1.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 3329978 3329983 . + . misc_feature unknown_2807 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3330034 3330049 . + . misc_feature unknown_2808 ; colour "6" ; note "ttaactatttttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3330241 3330246 . + . misc_feature unknown_2809 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3330269 3330288 . + . misc_feature unknown_2810 ; colour "6" ; note "ctaacagataatattattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3330968 3330973 . + . misc_feature unknown_2811 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3330995 3331013 . + . misc_feature unknown_2812 ; colour "6" ; note "ctgacaattgattttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3331497 3331562 . + . mRNA SPBC17D1.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.02" ; systematic_id "SPBC17D1.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3331682 3331752 . - . mRNA SPBC17D1.03c ; ID "SPBC17D1.03c" ; systematic_id "SPBC17D1.03c" ; note "mRNA from AU007862" ;
chromosome2 GeneDB CDS_parts 3331753 3332769 . - . mRNA SPBC17D1.03c ; db_xref "SPD:15/15B07" ; systematic_id "SPBC17D1.03c" ; colour "7" ; GO "GO:0000175; 3'-5'-exoribonuclease activity
GO:0006364; 35S primary transcript processing
GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC17D1.03c" ; product "exosome subunit Rrp43 (predicted)" ;
chromosome2 GeneDB CDS 3331753 3332185 . - . mRNA SPBC17D1.03c ; colour "7" ;
chromosome2 GeneDB CDS 3332292 3332627 . - . mRNA SPBC17D1.03c ; colour "7" ;
chromosome2 GeneDB CDS 3332726 3332769 . - . mRNA SPBC17D1.03c ; colour "7" ;
chromosome2 GeneDB misc_feature 3332186 3332201 . - . misc_feature unknown_2813 ; colour "6" ; note "ctaacaacttatacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3332286 3332291 . - . misc_feature unknown_2814 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3332628 3332646 . - . misc_feature unknown_2815 ; colour "6" ; note "ctaacattttactggatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3332720 3332725 . - . misc_feature unknown_2816 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3332768 3332940 . - . mRNA SPBC17D1.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.03c" ; systematic_id "SPBC17D1.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3333545 3333602 . + . mRNA SPBC17D1.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.04" ; systematic_id "SPBC17D1.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3333603 3334355 . + . mRNA SPBC17D1.04 ; systematic_id "SPBC17D1.04" ; colour "2" ; gene "SPBC17D1.04 ||| acr1" ; db_xref "SPD:43/43B05" ; Alias "acr1" ; GO "GO:0000500; RNA polymerase I upstream activating factor complex
GO:0005730; nucleolus
GO:0034503; protein localization to nucleolar rDNA repeats
GO:0034613; cellular protein localization
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18362178; date=20080602 ||| term=orthologous to S. cerevisiae YMR270C; db_xref=PMID:18362178; date=20080602 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, Accumulation of Condensin at RDNA; date=20100723" ; primary_name "acr1" ; product "upstream activation factor complex subunit Acr1" ;
chromosome2 GeneDB CDS 3333603 3334355 . + . mRNA SPBC17D1.04 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3334356 3334478 . + . mRNA SPBC17D1.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.04" ; systematic_id "SPBC17D1.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3335027 3335109 . + . mRNA SPBC17D1.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.05" ; systematic_id "SPBC17D1.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3335110 3336216 . + . mRNA SPBC17D1.05 ; db_xref "SPD:17/17D10" ; systematic_id "SPBC17D1.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC17D1.05" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3335110 3336216 . + . mRNA SPBC17D1.05 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 3336217 3337062 . + . mRNA SPBC17D1.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.05" ; systematic_id "SPBC17D1.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3336677 3337137 . + . misc_RNA SPNCRNA.112 ; db_xref "EMBL:AU006802" ; systematic_id "SPNCRNA.112" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU006802; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU006802; date=20050412" ; gene "SPNCRNA.112" ; product "non-coding RNA (predicted)" ; note "mRNA from AU006802; not associated with an ORF; possible 3' UTR of SPBC17D1.05" ;
chromosome2 GeneDB CDS_parts 3338604 3340340 . + . mRNA SPBC17D1.06 ; systematic_id "SPBC17D1.06" ; colour "7" ; gene "dbp3 ||| SPBC17D1.06" ; note "N-terminal may need truncating ||| used to have code SPCC17D1.06 (typo)" ; Alias "dbp3" ; obsolete_name "SPCC17D1.06" ; db_xref "SPD:35/35H02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YGL078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing
GO:0000027; ribosomal large subunit assembly and maintenance
GO:0005730; nucleolus
GO:0005524; ATP binding" ; primary_name "dbp3" ; product "ATP-dependent RNA helicase Dbp3 (predicted)" ;
chromosome2 GeneDB CDS 3338604 3340340 . + . mRNA SPBC17D1.06 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3340341 3340583 . + . mRNA SPBC17D1.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.06" ; systematic_id "SPBC17D1.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3340364 3340724 . - . mRNA SPBC17D1.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.07c" ; systematic_id "SPBC17D1.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3340725 3343918 . - . mRNA SPBC17D1.07c ; db_xref "SPD:48/48A02" ; systematic_id "SPBC17D1.07c" ; colour "7" ; GO "GO:0005509; calcium ion binding
GO:0030695; GTPase regulator activity
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=calponin homology (CH) domain; date=19700101 ||| term=IQ domain; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC17D1.07c" ; product "GTPase regulator (predicted)" ;
chromosome2 GeneDB CDS 3340725 3340899 . - . mRNA SPBC17D1.07c ; colour "7" ;
chromosome2 GeneDB CDS 3340986 3341441 . - . mRNA SPBC17D1.07c ; colour "7" ;
chromosome2 GeneDB CDS 3341488 3341950 . - . mRNA SPBC17D1.07c ; colour "7" ;
chromosome2 GeneDB CDS 3341992 3342226 . - . mRNA SPBC17D1.07c ; colour "7" ;
chromosome2 GeneDB CDS 3342272 3343408 . - . mRNA SPBC17D1.07c ; colour "7" ;
chromosome2 GeneDB CDS 3343452 3343659 . - . mRNA SPBC17D1.07c ; colour "7" ;
chromosome2 GeneDB CDS 3343704 3343918 . - . mRNA SPBC17D1.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 3340900 3340914 . - . misc_feature unknown_2817 ; colour "6" ; note "ctaatcaaaaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3340980 3340985 . - . misc_feature unknown_2818 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3341442 3341458 . - . misc_feature unknown_2819 ; colour "6" ; note "ctgatctttatattcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3341482 3341487 . - . misc_feature unknown_2820 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3341951 3341965 . - . misc_feature unknown_2821 ; colour "6" ; note "ctaacgaatgcaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3341986 3341991 . - . misc_feature unknown_2822 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3342227 3342243 . - . misc_feature unknown_2823 ; colour "6" ; note "ctaaccgattgatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3342266 3342271 . - . misc_feature unknown_2824 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3343409 3343421 . - . misc_feature unknown_2825 ; colour "6" ; note "ctaacgttatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3343446 3343451 . - . misc_feature unknown_2826 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3343660 3343673 . - . misc_feature unknown_2827 ; colour "6" ; note "ctgacattaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3343698 3343703 . - . misc_feature unknown_2828 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3343917 3344541 . - . mRNA SPBC17D1.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC17D1.07c" ; systematic_id "SPBC17D1.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3344597 3344612 . + . mRNA SPBC11C11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.01" ; systematic_id "SPBC11C11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3344613 3346288 . + . mRNA SPBC11C11.01 ; systematic_id "SPBC11C11.01" ; colour "7" ; gene "SPBC17D1.08 ||| SPBC11C11.01" ; note "first two predicted exons are tentative - may use internal Met at base position. 18530" ; Alias "SPBC17D1.08" ; db_xref "SPD:45/45E08" ; synonym "SPBC17D1.08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SR140 ortholog; date=20091004 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003723; RNA binding
GO:0005686; U2 snRNP
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "SPBC17D1.08" ; product "U2-associated protein (predicted)" ;
chromosome2 GeneDB CDS 3344613 3344676 . + . mRNA SPBC11C11.01 ; colour "7" ;
chromosome2 GeneDB CDS 3344730 3344788 . + . mRNA SPBC11C11.01 ; colour "7" ;
chromosome2 GeneDB CDS 3344833 3345531 . + . mRNA SPBC11C11.01 ; colour "7" ;
chromosome2 GeneDB CDS 3345579 3345757 . + . mRNA SPBC11C11.01 ; colour "7" ;
chromosome2 GeneDB CDS 3345808 3346288 . + . mRNA SPBC11C11.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 3344677 3344682 . + . misc_feature unknown_2829 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3344714 3344729 . + . misc_feature unknown_2830 ; colour "6" ; note "tcaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3344789 3344794 . + . misc_feature unknown_2831 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3344820 3344832 . + . misc_feature unknown_2832 ; colour "6" ; note "ctaatgtgttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3345532 3345537 . + . misc_feature unknown_2833 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3345563 3345578 . + . misc_feature unknown_2834 ; colour "6" ; note "ctaatgtttattgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3345758 3345763 . + . misc_feature unknown_2835 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3345793 3345807 . + . misc_feature unknown_2836 ; colour "6" ; note "ttaattgcgtatcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3346289 3346413 . + . mRNA SPBC11C11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.01" ; systematic_id "SPBC11C11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3346629 3346817 . - . mRNA SPBC17D1.17 ; systematic_id "SPBC17D1.17" ; colour "8" ; note "conserved in japonicus" ; obsolete_name "SPNCRNA.542" ; Alias "tam11" ; synonym "SPNGAF32" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "tam11" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3346629 3346817 . - . mRNA SPBC17D1.17 ; colour "8" ;
chromosome2 GeneDB 5'-UTR 3346818 3346975 . - . mRNA SPBC17D1.17 ; db_xref "PMID:21270388" ; systematic_id "SPBC17D1.17" ;
chromosome2 GeneDB 5'-UTR 3347954 3347980 . + . mRNA SPBC11C11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.02" ; systematic_id "SPBC11C11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3347981 3350200 . + . mRNA SPBC11C11.02 ; systematic_id "SPBC11C11.02" ; colour "2" ; gene "imp2 ||| SPBC11C11.02" ; db_xref "SPD:46/46G01" ; Alias "imp2" ; GO "GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0005515; protein binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YMR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100218 ||| term=human GAS7 ortholog; date=20100218" ; primary_name "imp2" ; product "contractile ring protein Imp2" ;
chromosome2 GeneDB CDS 3347981 3348049 . + . mRNA SPBC11C11.02 ; colour "2" ;
chromosome2 GeneDB CDS 3348144 3348235 . + . mRNA SPBC11C11.02 ; colour "2" ;
chromosome2 GeneDB CDS 3348301 3349973 . + . mRNA SPBC11C11.02 ; colour "2" ;
chromosome2 GeneDB CDS 3350022 3350200 . + . mRNA SPBC11C11.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 3348050 3348055 . + . misc_feature unknown_2837 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3348127 3348143 . + . misc_feature unknown_2838 ; colour "6" ; note "ctaacattctttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3348236 3348241 . + . misc_feature unknown_2839 ; colour "6" ; note "gtgaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3348285 3348300 . + . misc_feature unknown_2840 ; colour "6" ; note "ctaacttcaaccttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3349974 3349979 . + . misc_feature unknown_2841 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3350007 3350021 . + . misc_feature unknown_2842 ; colour "6" ; note "ctaacttgaatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3350201 3350370 . + . mRNA SPBC11C11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.02" ; systematic_id "SPBC11C11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 3350594 3350688 . + . tRNA SPBTRNASER.06 ; obsolete_name "SPCTRNASER.06" ; systematic_id "SPBTRNASER.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033431; CGA codon-amino acid adaptor activity" ; product "tRNA Serine" ; note "tRNA Ser anticodon GCT, Cove score 39.85" ;
chromosome2 GeneDB CDS_parts 3350848 3352814 . + . mRNA SPBC11C11.03 ; systematic_id "SPBC11C11.03" ; colour "2" ; gene "ndc80 ||| ndc10 ||| tid3 ||| SPBC11C11.03" ; Alias "ndc80" ; db_xref "SPD:27/27B05" ; synonym "ndc10 ||| tid3" ; GO "GO:0031617; NMS complex
GO:0031262; Ndc80 complex
; condensed nuclear chromosome kinetochore
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0000070; mitotic sister chromatid segregation
GO:0019236; response to pheromone" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YIL144W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ndc80" ; product "spindle pole body protein Ndc80" ;
chromosome2 GeneDB CDS 3350848 3350875 . + . mRNA SPBC11C11.03 ; colour "2" ;
chromosome2 GeneDB CDS 3350925 3351108 . + . mRNA SPBC11C11.03 ; colour "2" ;
chromosome2 GeneDB CDS 3351152 3352814 . + . mRNA SPBC11C11.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 3350876 3350881 . + . misc_feature unknown_2843 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3350909 3350924 . + . misc_feature unknown_2844 ; colour "6" ; note "ttaacaataagtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3351109 3351114 . + . misc_feature unknown_2845 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3351135 3351151 . + . misc_feature unknown_2846 ; colour "6" ; note "ctaatcttgttgcatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3352815 3352845 . + . mRNA SPBC11C11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.03" ; systematic_id "SPBC11C11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3353145 3356725 . - . mRNA SPBC11C11.04c ; systematic_id "SPBC11C11.04c" ; colour "2" ; gene "alp1 ||| SPBC11C11.04c" ; Alias "alp1" ; db_xref "SPD:41/41A08" ; GO "GO:0000235; astral microtubule
GO:0048487; beta-tubulin binding
GO:0005515; protein binding
GO:0006457; beta-tubulin folding
GO:0007163; establishment and/or maintenance of cell polarity
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0007023; post-chaperonin tubulin folding pathway" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9450991; date=19700101 ||| term=orthologous to S. cerevisiae YOR349W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "alp1" ; product "tubulin specific chaperone cofactor D, Alp1" ;
chromosome2 GeneDB CDS 3353145 3353508 . - . mRNA SPBC11C11.04c ; colour "2" ;
chromosome2 GeneDB CDS 3353551 3353768 . - . mRNA SPBC11C11.04c ; colour "2" ;
chromosome2 GeneDB CDS 3353815 3353950 . - . mRNA SPBC11C11.04c ; colour "2" ;
chromosome2 GeneDB CDS 3353993 3354375 . - . mRNA SPBC11C11.04c ; colour "2" ;
chromosome2 GeneDB CDS 3354415 3355401 . - . mRNA SPBC11C11.04c ; colour "2" ;
chromosome2 GeneDB CDS 3355446 3356534 . - . mRNA SPBC11C11.04c ; colour "2" ;
chromosome2 GeneDB CDS 3356579 3356725 . - . mRNA SPBC11C11.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 3353509 3353521 . - . misc_feature unknown_2847 ; colour "6" ; note "ctaatgatatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3353545 3353550 . - . misc_feature unknown_2848 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3353769 3353781 . - . misc_feature unknown_2849 ; colour "6" ; note "ctaactctactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3353809 3353814 . - . misc_feature unknown_2850 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3353951 3353961 . - . misc_feature unknown_2851 ; colour "6" ; note "ttaaccactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3353987 3353992 . - . misc_feature unknown_2852 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3354376 3354388 . - . misc_feature unknown_2853 ; colour "6" ; note "ttaacatgaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3354409 3354414 . - . misc_feature unknown_2854 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3355402 3355416 . - . misc_feature unknown_2855 ; colour "6" ; note "ctaatccttatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3355440 3355445 . - . misc_feature unknown_2856 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3356535 3356550 . - . misc_feature unknown_2857 ; colour "6" ; note "ctaattaaaattctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3356573 3356578 . - . misc_feature unknown_2858 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3356724 3357522 . - . mRNA SPBC11C11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.04c" ; systematic_id "SPBC11C11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3357779 3358633 . + . mRNA SPBC11C11.05 ; db_xref "SPD:11/11C08" ; systematic_id "SPBC11C11.05" ; colour "7" ; GO "GO:0006078; 1,6-beta-glucan biosynthesis
GO:0009277; cell wall (sensu Fungi)
GO:0005576; extracellular region
GO:0009272; fungal-type cell wall biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL049C and YJL174W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; gene "SPBC11C11.05" ; product "KRE9 family cell wall biosynthesis protein (predicted)" ;
chromosome2 GeneDB CDS 3357779 3358633 . + . mRNA SPBC11C11.05 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3358634 3358953 . + . mRNA SPBC11C11.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.05" ; systematic_id "SPBC11C11.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3359226 3359359 . - . mRNA SPBC11C11.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.06c" ; systematic_id "SPBC11C11.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3359360 3359896 . - . mRNA SPBC11C11.06c ; db_xref "SPD:42/42C04" ; systematic_id "SPBC11C11.06c" ; colour "8" ; GO "GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC11C11.06c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3359360 3359896 . - . mRNA SPBC11C11.06c ; colour "8" ;
chromosome2 GeneDB 5'-UTR 3359895 3359940 . - . mRNA SPBC11C11.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.06c" ; systematic_id "SPBC11C11.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 3360519 3360590 . - . tRNA SPBTRNAPRO.08 ; systematic_id "SPBTRNAPRO.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033416; TGG codon-amino acid adaptor activity" ; gene "SPBTRNAPRO.08" ; product "tRNA Proline" ; note "tRNA Pro anticodon TGG, Cove score 57.73" ;
chromosome2 GeneDB misc_feature 3360977 3361072 . + . misc_feature unknown_2859 ; note "cob intron fragment, previously annotated as pseudogene SPBC11C11.12" ;
chromosome2 GeneDB promoter 3361731 3361739 . + . promoter unknown_2860 ; colour "4" ; note "Homol E box" ;
chromosome2 GeneDB promoter 3361752 3361759 . + . promoter unknown_2861 ; colour "4" ; note "Homol D box" ;
chromosome2 GeneDB CDS_parts 3361817 3362432 . + . mRNA SPBC11C11.07 ; systematic_id "SPBC11C11.07" ; colour "2" ; gene "rpl1801 ||| rpl18-1 ||| SPBC11C11.07 ||| rpl18" ; Alias "rpl1801" ; db_xref "SPD:40/40A01" ; synonym "rpl18-1 ||| rpl18" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL120C and YNL301C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl1801" ; product "60S ribosomal protein L18" ;
chromosome2 GeneDB CDS 3361817 3361819 . + . mRNA SPBC11C11.07 ; colour "2" ;
chromosome2 GeneDB CDS 3361872 3362432 . + . mRNA SPBC11C11.07 ; colour "2" ;
chromosome2 GeneDB misc_feature 3361820 3361825 . + . misc_feature unknown_2862 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3361856 3361871 . + . misc_feature unknown_2863 ; colour "6" ; note "ctaatgagtgatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3362433 3362580 . + . mRNA SPBC11C11.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.07" ; systematic_id "SPBC11C11.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3362855 3362883 . + . mRNA SPBC11C11.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.08" ; systematic_id "SPBC11C11.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3362884 3363806 . + . mRNA SPBC11C11.08 ; systematic_id "SPBC11C11.08" ; colour "2" ; gene "srp1 ||| SPBC11C11.08" ; Alias "srp1" ; db_xref "SPD:32/32B03" ; GO "GO:0005634; nucleus
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12186627; date=19700101 ||| term=SR family; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:12186627; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Dsk1; qualifier=phosphorylated_by; db_xref=PMID:12186627; date=20100825" ; primary_name "srp1" ; product "SR family protein Srp1" ;
chromosome2 GeneDB CDS 3362884 3362969 . + . mRNA SPBC11C11.08 ; colour "2" ;
chromosome2 GeneDB CDS 3363016 3363072 . + . mRNA SPBC11C11.08 ; colour "2" ;
chromosome2 GeneDB CDS 3363122 3363806 . + . mRNA SPBC11C11.08 ; colour "2" ;
chromosome2 GeneDB misc_feature 3362970 3362975 . + . misc_feature unknown_2864 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 3362970 3363015 . + . intron SPBC11C11.08 ; systematic_id "SPBC11C11.08" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 3362999 3363015 . + . misc_feature unknown_2865 ; colour "6" ; note "ctaatttattcatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3363073 3363078 . + . misc_feature unknown_2866 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 3363073 3363121 . + . intron SPBC11C11.08 ; systematic_id "SPBC11C11.08" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 3363102 3363121 . + . misc_feature unknown_2867 ; colour "6" ; note "ttaaccgtcttattggatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3363807 3364344 . + . mRNA SPBC11C11.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.08" ; systematic_id "SPBC11C11.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3364726 3364745 . - . mRNA SPBC11C11.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.09c" ; systematic_id "SPBC11C11.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3364746 3365630 . - . mRNA SPBC11C11.09c ; systematic_id "SPBC11C11.09c" ; colour "2" ; gene "rpl502 ||| rpl5-2 ||| SPBC11C11.09c ||| rpl5b" ; Alias "rpl502" ; db_xref "SPD:40/40B06" ; synonym "rpl5-2 ||| rpl5b" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL131W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; primary_name "rpl502" ; product "60S ribosomal protein L5" ;
chromosome2 GeneDB CDS 3364746 3365630 . - . mRNA SPBC11C11.09c ; colour "2" ;
chromosome2 GeneDB CDS_parts 3365690 3367016 . + . mRNA SPBC11C11.10 ; systematic_id "SPBC11C11.10" ; colour "7" ; gene "SPBC11C11.10 ||| SPBC3B8.13c" ; db_xref "SPD:44/44C06" ; synonym "SPBC3B8.13c" ; GO "GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0009982; pseudouridine synthase activity
GO:0031119; tRNA pseudouridine synthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL292W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; product "tRNA pseudouridine synthase (predicted)" ; EC_number "4.2.1.70" ;
chromosome2 GeneDB CDS 3365690 3365894 . + . mRNA SPBC11C11.10 ; colour "7" ;
chromosome2 GeneDB CDS 3365998 3367016 . + . mRNA SPBC11C11.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 3365895 3365900 . + . misc_feature unknown_2868 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3365983 3367292 . - . misc_feature unknown_2869 ; note "nominal overlap with comsid SPBC3B8, EM:AL022244 S.pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 3365983 3367292 . + . misc_feature unknown_2870 ; note "nominal overlap with cosmid SPBC11C11, EM:AL031528 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 3365987 3365997 . + . misc_feature unknown_2871 ; colour "6" ; note "ctaactgacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3367017 3367092 . + . mRNA SPBC11C11.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC11C11.10" ; systematic_id "SPBC11C11.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3367171 3369220 . - . mRNA SPBC11C11.11c ; systematic_id "SPBC11C11.11c" ; colour "7" ; gene "SPBC11C11.11c ||| SPBC3B8.12" ; db_xref "SPD:37/37C05" ; synonym "SPBC3B8.12" ; GO "GO:0005739; mitochondrion
GO:0004386; helicase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDR332W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; product "mitochondrial ATP-dependent DNA helicase Irc3 (predicted)" ;
chromosome2 GeneDB CDS 3367171 3368204 . - . mRNA SPBC11C11.11c ; colour "7" ;
chromosome2 GeneDB CDS 3368246 3368397 . - . mRNA SPBC11C11.11c ; colour "7" ;
chromosome2 GeneDB CDS 3368446 3368475 . - . mRNA SPBC11C11.11c ; colour "7" ;
chromosome2 GeneDB CDS 3368515 3368807 . - . mRNA SPBC11C11.11c ; colour "7" ;
chromosome2 GeneDB CDS 3368865 3368996 . - . mRNA SPBC11C11.11c ; colour "7" ;
chromosome2 GeneDB CDS 3369041 3369220 . - . mRNA SPBC11C11.11c ; colour "7" ;
chromosome2 GeneDB misc_feature 3368205 3368219 . - . misc_feature unknown_2872 ; colour "6" ; note "ttaatttccttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3368240 3368245 . - . misc_feature unknown_2873 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3368398 3368415 . - . misc_feature unknown_2874 ; colour "6" ; note "ctaactcccaatgttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3368440 3368445 . - . misc_feature unknown_2875 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3368476 3368486 . - . misc_feature unknown_2876 ; colour "6" ; note "ctaataaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3368509 3368514 . - . misc_feature unknown_2877 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3368808 3368822 . - . misc_feature unknown_2878 ; colour "6" ; note "ctaactttgccatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3368859 3368864 . - . misc_feature unknown_2879 ; colour "6" ; note "gtaccg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3368997 3369011 . - . misc_feature unknown_2880 ; colour "6" ; note "ttaacacgtctaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3369035 3369040 . - . misc_feature unknown_2881 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 3369513 3369577 . - . mRNA SPBC3B8.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.11" ; systematic_id "SPBC3B8.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3369578 3372184 . - . mRNA SPBC3B8.11 ; systematic_id "SPBC3B8.11" ; colour "7" ; gene "rrn6 ||| SPBC3B8.11" ; note "ortholog for S. cerevisiae RRN6, alignment will be in next Pfam release" ; Alias "rrn6" ; db_xref "SPD:38/38F05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL014C; date=20070807 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0000120; RNA polymerase I transcription factor complex
GO:0003701; RNA polymerase I transcription factor activity
GO:0006360; transcription from RNA polymerase I promoter" ; primary_name "rrn6" ; product "RNA polymerase I transcription factor subunit Rrn6 (predicted)" ;
chromosome2 GeneDB CDS 3369578 3372184 . - . mRNA SPBC3B8.11 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3372183 3372262 . - . mRNA SPBC3B8.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.11" ; systematic_id "SPBC3B8.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3373306 3373464 . + . mRNA SPBC3B8.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.10c" ; systematic_id "SPBC3B8.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3373465 3374895 . + . mRNA SPBC3B8.10c ; systematic_id "SPBC3B8.10c" ; colour "7" ; db_xref "SPD:22/22A04" ; Alias "nem1" ; GO "GO:0016021; integral to membrane
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0004721; phosphoprotein phosphatase activity
GO:0030437; ascospore formation
GO:0006998; nuclear envelope organization
GO:0006470; protein amino acid dephosphorylation
GO:0046890; regulation of lipid biosynthetic process
GO:0008287; Nem1-Spo7 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nem1" ; product "Nem1-Spo7 phosphatase complex catalytic subunit Nem1 (predicted)" ;
chromosome2 GeneDB CDS 3373465 3374895 . + . mRNA SPBC3B8.10c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3374896 3375450 . + . mRNA SPBC3B8.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.10c" ; systematic_id "SPBC3B8.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3375459 3375560 . - . mRNA SPBC3B8.09 ; ID "SPBC3B8.09" ; systematic_id "SPBC3B8.09" ; note "mRNA from AU013939" ;
chromosome2 GeneDB CDS_parts 3375561 3377354 . - . mRNA SPBC3B8.09 ; db_xref "SPD:36/36D04" ; systematic_id "SPBC3B8.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL153C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; colour "7" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005634; nucleus
GO:0030515; snoRNA binding" ; gene "SPBC3B8.09" ; product "U3 snoRNP-associated protein Utp3 (predicted)" ;
chromosome2 GeneDB CDS 3375561 3377354 . - . mRNA SPBC3B8.09 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3377353 3377375 . - . mRNA SPBC3B8.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.09" ; systematic_id "SPBC3B8.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3377709 3377814 . - . mRNA SPBC3B8.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.08" ; systematic_id "SPBC3B8.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3377815 3378439 . - . mRNA SPBC3B8.08 ; db_xref "SPD:07/07B03" ; systematic_id "SPBC3B8.08" ; colour "7" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0000778; kinetochore" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Sjogren's syndrome; date=20091228" ; gene "SPBC3B8.08" ; product "Sjogren's syndrome/scleroderma autoantigen 1 family (predicted)" ;
chromosome2 GeneDB CDS 3377815 3378183 . - . mRNA SPBC3B8.08 ; colour "7" ;
chromosome2 GeneDB CDS 3378347 3378439 . - . mRNA SPBC3B8.08 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3378438 3378587 . - . mRNA SPBC3B8.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.08" ; systematic_id "SPBC3B8.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3379891 3379982 . + . misc_RNA SPNCRNA.115 ; systematic_id "SPNCRNA.115" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.115" ; product "non-coding RNA (predicted)" ; note "cDNA, clone spc00161; not associatd with an orf" ;
chromosome2 GeneDB 5'-UTR 3380900 3381861 . + . mRNA SPBC3B8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.07c" ; systematic_id "SPBC3B8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3381862 3382950 . + . mRNA SPBC3B8.07c ; systematic_id "SPBC3B8.07c" ; colour "2" ; gene "dsd1 ||| SPBC3B8.07c" ; Alias "dsd1" ; obsolete_name "SDCB3B8.07c" ; db_xref "SPD:17/17A06" ; GO "GO:0016021; integral to membrane
GO:0042284; sphingolipid delta-4 desaturase activity
GO:0046512; sphingosine biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060411 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12633877; date=20060411 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dsd1" ; product "dihydroceramide delta-4 desaturase" ; EC_number "1.14.-.-" ;
chromosome2 GeneDB CDS 3381862 3382950 . + . mRNA SPBC3B8.07c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3382951 3383137 . + . mRNA SPBC3B8.07c ; ID "SPBC3B8.07c" ; systematic_id "SPBC3B8.07c" ; note "mRNA from AU012409" ;
chromosome2 GeneDB 3'-UTR 3383318 3383478 . - . mRNA SPBC3B8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.06" ; systematic_id "SPBC3B8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3383479 3385014 . - . mRNA SPBC3B8.06 ; db_xref "SPD:44/44H05" ; systematic_id "SPBC3B8.06" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR061W and YNL237W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC3B8.06" ; product "conserved fungal protein" ; note "overlaps two S.cerevisiae hypotheticals - putative mis-prediction in S. cer ChrIII region), similar (at N- term) eg. to YCR061W, similar (at C-term) eg. to YCR062W" ;
chromosome2 GeneDB CDS 3383479 3385014 . - . mRNA SPBC3B8.06 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3385013 3385461 . - . mRNA SPBC3B8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.06" ; systematic_id "SPBC3B8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3385802 3385918 . - . mRNA SPBC3B8.05 ; ID "SPBC3B8.05" ; systematic_id "SPBC3B8.05" ; note "mRNA from AU012826" ;
chromosome2 GeneDB CDS_parts 3385919 3387317 . - . mRNA SPBC3B8.05 ; systematic_id "SPBC3B8.05" ; colour "7" ; gene "SPBC3B8.05" ; db_xref "SPD:21/21F06" ; synonym "dph1" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL103W; date=19700101 ||| term=human DPH1 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene name conflict; cv=warning; date=20100120" ; GO "GO:0017183; peptidyl-diphthamide biosynthesis from peptidyl-histidine
GO:0005737; cytoplasm
GO:0006417; regulation of translation" ; product "diphthamide biosynthesis protein Dph1 (predicted)" ;
chromosome2 GeneDB CDS 3385919 3387025 . - . mRNA SPBC3B8.05 ; colour "7" ;
chromosome2 GeneDB CDS 3387114 3387317 . - . mRNA SPBC3B8.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 3387026 3387039 . - . misc_feature unknown_2882 ; colour "6" ; note "ctaacctttaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3387108 3387113 . - . misc_feature unknown_2883 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3387316 3387441 . - . mRNA SPBC3B8.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.05" ; systematic_id "SPBC3B8.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3387606 3387699 . + . mRNA SPBC3B8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.04c" ; systematic_id "SPBC3B8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3387700 3390552 . + . mRNA SPBC3B8.04c ; db_xref "SPD:29/29F04" ; systematic_id "SPBC3B8.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNR013C and YCR037C and YJL198W; date=19700101 ||| term=SPX domain protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; colour "7" ; gene "SPBC3B8.04c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 3387700 3387716 . + . mRNA SPBC3B8.04c ; colour "7" ;
chromosome2 GeneDB CDS 3387763 3387807 . + . mRNA SPBC3B8.04c ; colour "7" ;
chromosome2 GeneDB CDS 3387863 3387883 . + . mRNA SPBC3B8.04c ; colour "7" ;
chromosome2 GeneDB CDS 3388032 3390552 . + . mRNA SPBC3B8.04c ; colour "7" ;
chromosome2 GeneDB misc_feature 3387717 3387722 . + . misc_feature unknown_2884 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3387748 3387762 . + . misc_feature unknown_2885 ; colour "6" ; note "ctaattactttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3387808 3387813 . + . misc_feature unknown_2886 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3387845 3387862 . + . misc_feature unknown_2887 ; colour "6" ; note "ctaacaatcggtgcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3387884 3387889 . + . misc_feature unknown_2888 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3388014 3388031 . + . misc_feature unknown_2889 ; colour "6" ; note "ctaacatatatttttaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3390553 3390797 . + . mRNA SPBC3B8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.04c" ; systematic_id "SPBC3B8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3391676 3391816 . - . mRNA SPBC3B8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.03" ; systematic_id "SPBC3B8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3391817 3393169 . - . mRNA SPBC3B8.03 ; db_xref "SPD:21/21A05" ; systematic_id "SPBC3B8.03" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009085; lysine biosynthetic process
GO:0004755; saccharopine dehydrogenase (NADP+, L- glutamate-forming) activity
GO:0005737; cytoplasm" ; gene "SPBC3B8.03" ; product "saccharopine dehydrogenase (predicted)" ; EC_number "1.5.1.10" ;
chromosome2 GeneDB CDS 3391817 3393169 . - . mRNA SPBC3B8.03 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3393168 3393274 . - . mRNA SPBC3B8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.03" ; systematic_id "SPBC3B8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snoRNA 3393616 3393802 . + . snoRNA SPSNORNA.33 ; Alias "sno16" ; db_xref "EMBL:AJ577640 ||| EMBL:AJ632018 ||| PMID:15716270" ; systematic_id "SPSNORNA.33" ; synonym "snR100" ; primary_name "sno16" ; gene "SPSNORNA.33 ||| sno16" ; product "16 small nucleolar RNA" ;
chromosome2 GeneDB 3'-UTR 3393870 3394349 . - . mRNA SPBC3B8.02 ; Alias "php5" ; ID "SPBC3B8.02" ; db_xref "EMBL:SPU88525" ; systematic_id "SPBC3B8.02" ; primary_name "php5" ;
chromosome2 GeneDB CDS_parts 3394350 3395700 . - . mRNA SPBC3B8.02 ; systematic_id "SPBC3B8.02" ; colour "2" ; gene "php5 ||| SPBC3B8.02" ; Alias "php5" ; db_xref "SPD:40/40D11" ; GO "GO:0016602; CCAAT-binding factor complex
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0045941; positive regulation of transcription
GO:0006109; regulation of carbohydrate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR358W; date=19700101 ||| term=histone fold; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=DNA binding specificity, complex binds 5'-CCAAT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates pcl1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates sdh41; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates isa1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates fbp1; db_xref=PMID:11238405; date=20100302 ||| term=gene expression, transcriptionally regulates cyc1; db_xref=PMID:9372932; date=20100302" ; primary_name "php5" ; product "CCAAT-binding factor complex subunit Php5" ;
chromosome2 GeneDB CDS 3394350 3395222 . - . mRNA SPBC3B8.02 ; colour "2" ;
chromosome2 GeneDB CDS 3395281 3395310 . - . mRNA SPBC3B8.02 ; colour "2" ;
chromosome2 GeneDB CDS 3395356 3395700 . - . mRNA SPBC3B8.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 3395223 3395235 . - . misc_feature unknown_2890 ; colour "6" ; note "ctaatttttttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3395223 3395280 . - . intron SPBC3B8.02 ; Alias "php5" ; db_xref "EMBL:SPU88525" ; systematic_id "SPBC3B8.02" ; primary_name "php5" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 3395275 3395280 . - . misc_feature unknown_2891 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3395311 3395329 . - . misc_feature unknown_2892 ; colour "6" ; note "ctaactattgattatgcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3395311 3395355 . - . intron SPBC3B8.02 ; Alias "php5" ; db_xref "EMBL:SPU88525" ; systematic_id "SPBC3B8.02" ; primary_name "php5" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 3395350 3395355 . - . misc_feature unknown_2893 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3395701 3396491 . - . mRNA SPBC3B8.02 ; Alias "php5" ; ID "SPBC3B8.02" ; db_xref "EMBL:SPU88525" ; systematic_id "SPBC3B8.02" ; primary_name "php5" ;
chromosome2 GeneDB 5'-UTR 3397400 3397627 . + . mRNA SPBC3B8.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B8.01c" ; systematic_id "SPBC3B8.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3397628 3399119 . + . mRNA SPBC3B8.01c ; systematic_id "SPBC3B8.01c" ; colour "2" ; gene "SPBC3B8.01c ||| arh1" ; Alias "arh1" ; db_xref "SPD:24/24B01" ; GO "GO:0005743; mitochondrial inner membrane
GO:0050660; FAD binding
GO:0050661; NADP binding
GO:0004324; ferredoxin-NADP+ reductase activity
GO:0015039; NADPH-adrenodoxin reductase activity
GO:0006879; cellular iron ion homeostasis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR376W; date=19700101 ||| term=human FDXR homolog; db_xref=PMID:18399988; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arh1" ; product "NADPH-adrenodoxin reductase Arh1" ;
chromosome2 GeneDB CDS 3397628 3397834 . + . mRNA SPBC3B8.01c ; colour "2" ;
chromosome2 GeneDB CDS 3397917 3399119 . + . mRNA SPBC3B8.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 3397835 3397840 . + . misc_feature unknown_2894 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 3397891 3399335 . - . mRNA SPBC13A2.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13A2.01c" ; systematic_id "SPBC13A2.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3397901 3397916 . + . misc_feature unknown_2895 ; colour "6" ; note "ctaacctctattgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3399282 3399380 . + . misc_feature unknown_2896 ; note "nominal overlap with SPBC3B8 S. pombe chromosome 2" ;
chromosome2 GeneDB CDS_parts 3399336 3400073 . - . mRNA SPBC13A2.01c ; db_xref "SPD:41/41E09" ; systematic_id "SPBC13A2.01c" ; colour "7" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000243; commitment complex
GO:0005846; nuclear cap binding complex
GO:0000339; RNA cap binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL178W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC13A2.01c" ; product "nuclear cap-binding complex small subunit (predicted)" ;
chromosome2 GeneDB CDS 3399336 3399466 . - . mRNA SPBC13A2.01c ; colour "7" ;
chromosome2 GeneDB CDS 3399548 3399755 . - . mRNA SPBC13A2.01c ; colour "7" ;
chromosome2 GeneDB CDS 3399864 3400073 . - . mRNA SPBC13A2.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 3399336 3399380 . - . misc_feature unknown_2897 ; note "see SPBC13A2.01c for full length CDS" ;
chromosome2 GeneDB misc_feature 3399378 3399378 . + . misc_feature unknown_2898 ; note "the original consensus for this base was A (ie GATC) but this is NOT the clone end, and end sequence, trace data and overlap with c13A2 showed this to be a T" ;
chromosome2 GeneDB misc_feature 3399467 3399476 . - . misc_feature unknown_2899 ; colour "6" ; note "ttgactttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3399542 3399547 . - . misc_feature unknown_2900 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3399756 3399773 . - . misc_feature unknown_2901 ; colour "6" ; note "ctaatcaaatattaccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3399858 3399863 . - . misc_feature unknown_2902 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3400072 3400094 . - . mRNA SPBC13A2.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13A2.01c" ; systematic_id "SPBC13A2.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3400603 3403014 . + . mRNA SPBC13A2.02 ; db_xref "SPD:49/49E06" ; systematic_id "SPBC13A2.02" ; colour "7" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL061W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC13A2.02" ; product "nucleoporin Nup82 (predicted)" ;
chromosome2 GeneDB CDS 3400603 3403014 . + . mRNA SPBC13A2.02 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3403015 3403173 . + . mRNA SPBC13A2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13A2.02" ; systematic_id "SPBC13A2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3403558 3403602 . + . mRNA SPBC13A2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13A2.03" ; systematic_id "SPBC13A2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3403603 3405150 . + . mRNA SPBC13A2.03 ; db_xref "SPD:50/50G11" ; systematic_id "SPBC13A2.03" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004605; phosphatidate cytidylyltransferase activity
GO:0006655; phosphatidylglycerol biosynthesis
GO:0006658; phosphatidylserine metabolism
GO:0005783; endoplasmic reticulum
GO:0016021; integral to membrane" ; gene "SPBC13A2.03" ; product "phosphatidate cytidylyltransferase (predicted)" ; EC_number "2.7.7.41" ;
chromosome2 GeneDB CDS 3403603 3403940 . + . mRNA SPBC13A2.03 ; colour "7" ;
chromosome2 GeneDB CDS 3404124 3404263 . + . mRNA SPBC13A2.03 ; colour "7" ;
chromosome2 GeneDB CDS 3404309 3405150 . + . mRNA SPBC13A2.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 3403941 3403946 . + . misc_feature unknown_2903 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3404110 3404123 . + . misc_feature unknown_2904 ; colour "6" ; note "ttaactttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3404264 3404269 . + . misc_feature unknown_2905 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3404295 3404308 . + . misc_feature unknown_2906 ; colour "6" ; note "ctaatttttgctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3405151 3405538 . + . mRNA SPBC13A2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13A2.03" ; systematic_id "SPBC13A2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3405575 3405835 . - . mRNA SPBC13A2.04c ; ID "SPBC13A2.04c" ; systematic_id "SPBC13A2.04c" ; note "mRNA from AU011140" ;
chromosome2 GeneDB CDS_parts 3405836 3407692 . - . mRNA SPBC13A2.04c ; systematic_id "SPBC13A2.04c" ; colour "7" ; gene "SPBC13A2.04c" ; obsolete_name "ptr2" ; db_xref "SPD:49/49C11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005887; integral to plasma membrane
GO:0042936; dipeptide transporter activity
GO:0042937; tripeptide transporter activity
GO:0035442; dipeptide transmembrane transport
GO:0035443; tripeptide transmembrane transport" ; product "PTR family peptide transporter (predicted)" ;
chromosome2 GeneDB CDS 3405836 3407692 . - . mRNA SPBC13A2.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3407691 3407793 . - . mRNA SPBC13A2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13A2.04c" ; systematic_id "SPBC13A2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3407926 3408022 . + . misc_feature unknown_2907 ; note "nominal overlap with SPBC4B4 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_RNA 3408356 3410137 . + . misc_RNA SPNCRNA.419 ; db_xref "PMID:18488015" ; synonym "SPNG1800" ; systematic_id "SPNCRNA.419" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| possibly 2 transcripts" ;
chromosome2 GeneDB 3'-UTR 3411334 3411375 . - . mRNA SPBC4B4.01c ; ID "SPBC4B4.01c" ; systematic_id "SPBC4B4.01c" ; note "mRNA from spc02659" ;
chromosome2 GeneDB CDS_parts 3411376 3412712 . - . mRNA SPBC4B4.01c ; db_xref "SPD:20/20F11" ; systematic_id "SPBC4B4.01c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR531W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0015937; coenzyme A biosynthesis
GO:0004594; pantothenate kinase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPBC4B4.01c" ; product "fumble family pantothenate kinase (predicted)" ; EC_number "2.7.1.33" ;
chromosome2 GeneDB CDS 3411376 3412392 . - . mRNA SPBC4B4.01c ; colour "7" ;
chromosome2 GeneDB CDS 3412465 3412553 . - . mRNA SPBC4B4.01c ; colour "7" ;
chromosome2 GeneDB CDS 3412607 3412712 . - . mRNA SPBC4B4.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 3412393 3412407 . - . misc_feature unknown_2908 ; colour "6" ; note "ctgacacttttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3412459 3412464 . - . misc_feature unknown_2909 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3412554 3412567 . - . misc_feature unknown_2910 ; colour "6" ; note "ttaataattattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3412601 3412606 . - . misc_feature unknown_2911 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3412711 3412905 . - . mRNA SPBC4B4.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.01c" ; systematic_id "SPBC4B4.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3413129 3413337 . - . mRNA SPBC4B4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.02c" ; systematic_id "SPBC4B4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3413338 3415059 . - . mRNA SPBC4B4.02c ; systematic_id "SPBC4B4.02c" ; colour "7" ; gene "SPBC4B4.02c ||| nca2" ; Alias "nca2" ; db_xref "SPD:35/35F05" ; GO "GO:0005741; mitochondrial outer membrane
GO:0016071; mRNA metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPR155C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "nca2" ; product "mitochondrial protein Nca2 (predicted)" ;
chromosome2 GeneDB CDS 3413338 3415059 . - . mRNA SPBC4B4.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3415058 3415218 . - . mRNA SPBC4B4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.02c" ; systematic_id "SPBC4B4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3415988 3416020 . + . mRNA SPBC4B4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.03" ; systematic_id "SPBC4B4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3416021 3418535 . + . mRNA SPBC4B4.03 ; systematic_id "SPBC4B4.03" ; colour "2" ; gene "rsc1 ||| SPBC4B4.03" ; Alias "rsc1" ; db_xref "SPD:29/29B09" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016586; RSC complex
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=orthologous to S. cerevisiae YGR056W and YLR357W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, chromosome segregation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=gene expression, transcriptionally regulates genes involved in vesicle mediated transport; db_xref=PMID:18622392; cv=gene_ex; date=20080717 ||| term=phenotype, resistance to Brefeldin A; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110" ; primary_name "rsc1" ; product "RSC complex subunit Rsc1" ;
chromosome2 GeneDB CDS 3416021 3416046 . + . mRNA SPBC4B4.03 ; colour "2" ;
chromosome2 GeneDB CDS 3416086 3416154 . + . mRNA SPBC4B4.03 ; colour "2" ;
chromosome2 GeneDB CDS 3416219 3418535 . + . mRNA SPBC4B4.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 3416047 3416052 . + . misc_feature unknown_2912 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3416075 3416085 . + . misc_feature unknown_2913 ; colour "6" ; note "ttaacaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3416155 3416160 . + . misc_feature unknown_2914 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3416196 3416218 . + . misc_feature unknown_2915 ; colour "6" ; note "ctaacatctatttttttttcaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3418536 3418573 . + . mRNA SPBC4B4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.03" ; systematic_id "SPBC4B4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3418888 3420656 . + . mRNA SPBC4B4.04 ; db_xref "SPD:36/36B10" ; systematic_id "SPBC4B4.04" ; colour "7" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006413; translational initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR054W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC4B4.04" ; product "translation initiation factor eIF2A (predicted)" ;
chromosome2 GeneDB CDS 3418888 3418912 . + . mRNA SPBC4B4.04 ; colour "7" ;
chromosome2 GeneDB CDS 3418951 3420656 . + . mRNA SPBC4B4.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 3418913 3418918 . + . misc_feature unknown_2916 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3418940 3418950 . + . misc_feature unknown_2917 ; colour "6" ; note "ctaacatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3420657 3421103 . + . mRNA SPBC4B4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.04" ; systematic_id "SPBC4B4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3421321 3421336 . + . mRNA SPBC4B4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.05" ; systematic_id "SPBC4B4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3421337 3421701 . + . mRNA SPBC4B4.05 ; systematic_id "SPBC4B4.05" ; colour "2" ; gene "smg1 ||| SPBC4B4.05" ; Alias "smg1" ; db_xref "SPD:02/02E05" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005685; snRNP U1
GO:0005681; spliceosome complex
GO:0000395; nuclear mRNA 5'-splice site recognition
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YFL017W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "smg1" ; product "Sm snRNP core protein Smg1" ;
chromosome2 GeneDB CDS 3421337 3421369 . + . mRNA SPBC4B4.05 ; colour "2" ;
chromosome2 GeneDB CDS 3421417 3421488 . + . mRNA SPBC4B4.05 ; colour "2" ;
chromosome2 GeneDB CDS 3421534 3421641 . + . mRNA SPBC4B4.05 ; colour "2" ;
chromosome2 GeneDB CDS 3421681 3421701 . + . mRNA SPBC4B4.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 3421370 3421375 . + . misc_feature unknown_2918 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3421400 3421416 . + . misc_feature unknown_2919 ; colour "6" ; note "ctaattcatggttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3421489 3421494 . + . misc_feature unknown_2920 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3421520 3421533 . + . misc_feature unknown_2921 ; colour "6" ; note "ctaacttttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3421642 3421647 . + . misc_feature unknown_2922 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3421668 3421680 . + . misc_feature unknown_2923 ; colour "6" ; note "ttgaccatagcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3421702 3421818 . + . mRNA SPBC4B4.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.05" ; systematic_id "SPBC4B4.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3422532 3422567 . + . mRNA SPBC4B4.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.06" ; systematic_id "SPBC4B4.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3422568 3423194 . + . mRNA SPBC4B4.06 ; systematic_id "SPBC4B4.06" ; colour "2" ; gene "vps25 ||| SPBC4B4.06" ; Alias "vps25" ; db_xref "SPD:42/42E06" ; GO "GO:0000814; ESCRT II complex
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR102C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps25" ; product "ESCRT II complex subunit Vps25" ;
chromosome2 GeneDB CDS 3422568 3422757 . + . mRNA SPBC4B4.06 ; colour "2" ;
chromosome2 GeneDB CDS 3422813 3422961 . + . mRNA SPBC4B4.06 ; colour "2" ;
chromosome2 GeneDB CDS 3423006 3423194 . + . mRNA SPBC4B4.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 3422758 3422763 . + . misc_feature unknown_2924 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3422789 3422812 . + . misc_feature unknown_2925 ; colour "6" ; note "ctaactttctttcttaccaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3422962 3422967 . + . misc_feature unknown_2926 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3422991 3423005 . + . misc_feature unknown_2927 ; colour "6" ; note "ctaattgttttacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3423247 3423371 . - . mRNA SPBC4B4.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.07c" ; systematic_id "SPBC4B4.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3423372 3424231 . - . mRNA SPBC4B4.07c ; systematic_id "SPBC4B4.07c" ; colour "2" ; gene "usp102 ||| SPBC4B4.07c ||| mud1" ; Alias "usp102" ; db_xref "SPD:11/11E01" ; synonym "mud1" ; GO "GO:0005685; snRNP U1
GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YBR119W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "usp102" ; product "U1 snRNP-associated protein Usp102" ;
chromosome2 GeneDB CDS 3423372 3423730 . - . mRNA SPBC4B4.07c ; colour "2" ;
chromosome2 GeneDB CDS 3423788 3424057 . - . mRNA SPBC4B4.07c ; colour "2" ;
chromosome2 GeneDB CDS 3424111 3424231 . - . mRNA SPBC4B4.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 3423731 3423747 . - . misc_feature unknown_2928 ; colour "6" ; note "ctaaccttatattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3423782 3423787 . - . misc_feature unknown_2929 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3424058 3424070 . - . misc_feature unknown_2930 ; colour "6" ; note "ctaacaatcgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3424105 3424110 . - . misc_feature unknown_2931 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3424230 3424457 . - . mRNA SPBC4B4.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.07c" ; systematic_id "SPBC4B4.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3427180 3427571 . + . mRNA SPBC4B4.08 ; ID "SPBC4B4.08" ; systematic_id "SPBC4B4.08" ; note "mRNA from AF017180" ;
chromosome2 GeneDB CDS_parts 3427572 3429167 . + . mRNA SPBC4B4.08 ; systematic_id "SPBC4B4.08" ; colour "2" ; gene "ght2 ||| SPBC4B4.08" ; Alias "ght2" ; db_xref "SPD:40/40F03" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "ght2" ; product "hexose transporter Ght2" ;
chromosome2 GeneDB CDS 3427572 3429167 . + . mRNA SPBC4B4.08 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3429168 3429424 . + . mRNA SPBC4B4.08 ; ID "SPBC4B4.08" ; systematic_id "SPBC4B4.08" ; note "mRNA from AF017180" ;
chromosome2 GeneDB 5'-UTR 3429791 3429800 . + . mRNA SPBC4B4.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.09" ; systematic_id "SPBC4B4.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3429801 3431974 . + . mRNA SPBC4B4.09 ; systematic_id "SPBC4B4.09" ; colour "2" ; gene "usp105 ||| prp39 ||| SPBC4B4.09" ; Alias "usp105" ; db_xref "SPD:37/37G08" ; synonym "prp39" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005685; snRNP U1
GO:0030627; pre-mRNA 5'-splice site binding
GO:0000243; commitment complex
GO:0000395; nuclear mRNA 5'-splice site recognition
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HAT repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YML046W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "usp105" ; product "U1 snRNP-associated protein Usp105" ;
chromosome2 GeneDB CDS 3429801 3429892 . + . mRNA SPBC4B4.09 ; colour "2" ;
chromosome2 GeneDB CDS 3429940 3430126 . + . mRNA SPBC4B4.09 ; colour "2" ;
chromosome2 GeneDB CDS 3430177 3430280 . + . mRNA SPBC4B4.09 ; colour "2" ;
chromosome2 GeneDB CDS 3430326 3430493 . + . mRNA SPBC4B4.09 ; colour "2" ;
chromosome2 GeneDB CDS 3430581 3431176 . + . mRNA SPBC4B4.09 ; colour "2" ;
chromosome2 GeneDB CDS 3431214 3431501 . + . mRNA SPBC4B4.09 ; colour "2" ;
chromosome2 GeneDB CDS 3431571 3431974 . + . mRNA SPBC4B4.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 3429893 3429898 . + . misc_feature unknown_2932 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3429925 3429939 . + . misc_feature unknown_2933 ; colour "6" ; note "ctaattatgatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3430127 3430132 . + . misc_feature unknown_2934 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3430162 3430176 . + . misc_feature unknown_2935 ; colour "6" ; note "ctaataaaaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3430281 3430286 . + . misc_feature unknown_2936 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3430314 3430325 . + . misc_feature unknown_2937 ; colour "6" ; note "ctaactcatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3430494 3430499 . + . misc_feature unknown_2938 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3430569 3430580 . + . misc_feature unknown_2939 ; colour "6" ; note "ctaacgtcgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3431177 3431182 . + . misc_feature unknown_2940 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3431197 3431213 . + . misc_feature unknown_2941 ; colour "6" ; note "ttaacattaacgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3431502 3431507 . + . misc_feature unknown_2942 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3431555 3431570 . + . misc_feature unknown_2943 ; colour "6" ; note "gtggcttacatattttccag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3431975 3431995 . + . mRNA SPBC4B4.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.09" ; systematic_id "SPBC4B4.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3432104 3432201 . - . mRNA SPBC4B4.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.10c" ; systematic_id "SPBC4B4.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3432202 3433190 . - . mRNA SPBC4B4.10c ; systematic_id "SPBC4B4.10c" ; colour "2" ; db_xref "SPD:43/43F09" ; Alias "atg5" ; synonym "mug77" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL149W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005829; cytosol
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032258; CVT pathway
GO:0030437; sporulation (sensu Fungi)" ; primary_name "atg5" ; product "autophagy associated protein Atg5" ;
chromosome2 GeneDB CDS 3432202 3432594 . - . mRNA SPBC4B4.10c ; colour "2" ;
chromosome2 GeneDB CDS 3432666 3432840 . - . mRNA SPBC4B4.10c ; colour "2" ;
chromosome2 GeneDB CDS 3432887 3433005 . - . mRNA SPBC4B4.10c ; colour "2" ;
chromosome2 GeneDB CDS 3433092 3433190 . - . mRNA SPBC4B4.10c ; colour "2" ;
chromosome2 GeneDB misc_feature 3432595 3432608 . - . misc_feature unknown_2944 ; colour "6" ; note "ttaactttttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3432660 3432665 . - . misc_feature unknown_2945 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3432841 3432855 . - . misc_feature unknown_2946 ; colour "6" ; note "ttaatcataatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3432881 3432886 . - . misc_feature unknown_2947 ; colour "6" ; note "gtatcg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3433006 3433025 . - . misc_feature unknown_2948 ; colour "6" ; note "ctcaccatattctacctaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3433086 3433091 . - . misc_feature unknown_2949 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3433189 3433533 . - . mRNA SPBC4B4.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.10c" ; systematic_id "SPBC4B4.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3433700 3433725 . + . mRNA SPBC4B4.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.11" ; systematic_id "SPBC4B4.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3433726 3434117 . + . mRNA SPBC4B4.11 ; db_xref "SPD:02/02H08" ; systematic_id "SPBC4B4.11" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR059W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC4B4.11" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 3433726 3433819 . + . mRNA SPBC4B4.11 ; colour "10" ;
chromosome2 GeneDB CDS 3433870 3434117 . + . mRNA SPBC4B4.11 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 3433808 3434227 . - . mRNA SPBC4B4.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.12c" ; systematic_id "SPBC4B4.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3433820 3433825 . + . misc_feature unknown_2950 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3433855 3433869 . + . misc_feature unknown_2951 ; colour "6" ; note "ctaacaagattcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3434118 3434414 . + . mRNA SPBC4B4.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.11" ; systematic_id "SPBC4B4.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3434228 3434560 . - . mRNA SPBC4B4.12c ; db_xref "SPD:01/01H08" ; systematic_id "SPBC4B4.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC4B4.12c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3434228 3434560 . - . mRNA SPBC4B4.12c ; colour "8" ;
chromosome2 GeneDB 5'-UTR 3434559 3434686 . - . mRNA SPBC4B4.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC4B4.12c" ; systematic_id "SPBC4B4.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3434828 3436372 . - . mRNA SPBC2G2.01c ; systematic_id "SPBC2G2.01c" ; colour "2" ; gene "liz1 ||| SPBC2G2.01c ||| SPBC4B4.13c" ; Alias "liz1" ; db_xref "SPD:33/33B07" ; synonym "SPBC4B4.13c" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR028C and YAL067C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=phenotype, sensitive to HU; db_xref=PMID:15075270; cv=phenotype; date=20100628" ; GO "GO:0015887; pantothenate transmembrane transport
GO:0015233; pantothenate transporter activity
GO:0005887; integral to plasma membrane
GO:0006633; fatty acid biosynthesis
GO:0007346; regulation of mitotic cell cycle" ; primary_name "liz1" ; product "pantothenate transporter Liz1" ;
chromosome2 GeneDB CDS 3434828 3436372 . - . mRNA SPBC2G2.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 3435217 3436925 . + . misc_feature unknown_2952 ; note "nominal overlap with cosmid SPBC2G2 and cosmid SPBC4B4" ;
chromosome2 GeneDB 5'-UTR 3436371 3437220 . - . mRNA SPBC2G2.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.01c" ; systematic_id "SPBC2G2.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3437553 3440783 . + . mRNA SPBC2G2.02 ; systematic_id "SPBC2G2.02" ; colour "2" ; gene "SPBC2G2.02 ||| syj1" ; Alias "syj1" ; db_xref "SPD:30/30B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL106C and YOL065C and YIL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0046856; phosphoinositide dephosphorylation
GO:0006897; endocytosis
GO:0004439; phosphoinositide 5-phosphatase activity
GO:0048017; inositol lipid-mediated signaling
GO:0046488; phosphatidylinositol metabolism
GO:0004445; inositol-polyphosphate 5-phosphatase activity" ; primary_name "syj1" ; product "inositol-polyphosphate 5-phosphatase (synaptojanin homolog 1)" ; EC_number "3.1.3.36" ;
chromosome2 GeneDB CDS 3437553 3440783 . + . mRNA SPBC2G2.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3440784 3440897 . + . mRNA SPBC2G2.02 ; ID "SPBC2G2.02" ; systematic_id "SPBC2G2.02" ; note "mRNA from AU010127" ;
chromosome2 GeneDB 3'-UTR 3441058 3441121 . - . mRNA SPBC2G2.03c ; ID "SPBC2G2.03c" ; systematic_id "SPBC2G2.03c" ; note "mRNA from AU008214" ;
chromosome2 GeneDB CDS_parts 3441122 3441594 . - . mRNA SPBC2G2.03c ; systematic_id "SPBC2G2.03c" ; colour "7" ; gene "sbh1 ||| SPBC2G2.03c" ; Alias "sbh1" ; db_xref "SPD:04/04D01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER087C-B and YER019C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005784; translocon complex
GO:0006616; SRP-dependent cotranslational protein targeting to membrane, translocation
GO:0008565; protein transporter activity
GO:0006620; posttranslational protein targeting to membrane" ; primary_name "sbh1" ; product "translocon beta subunit Sbh1 (predicted)" ; reserved_name "sbh1" ;
chromosome2 GeneDB CDS 3441122 3441221 . - . mRNA SPBC2G2.03c ; colour "7" ;
chromosome2 GeneDB CDS 3441272 3441403 . - . mRNA SPBC2G2.03c ; colour "7" ;
chromosome2 GeneDB CDS 3441468 3441529 . - . mRNA SPBC2G2.03c ; colour "7" ;
chromosome2 GeneDB CDS 3441580 3441594 . - . mRNA SPBC2G2.03c ; colour "7" ;
chromosome2 GeneDB misc_feature 3441222 3441236 . - . misc_feature unknown_2953 ; colour "6" ; note "ctaacgttaattaag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3441222 3441271 . - . intron SPBC2G2.03c ; systematic_id "SPBC2G2.03c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3441266 3441271 . - . misc_feature unknown_2954 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3441404 3441426 . - . misc_feature unknown_2955 ; colour "6" ; note "ctaactttttgtgtgatgtttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3441404 3441467 . - . intron SPBC2G2.03c ; systematic_id "SPBC2G2.03c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3441462 3441467 . - . misc_feature unknown_2956 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3441530 3441540 . - . misc_feature unknown_2957 ; colour "6" ; note "ctaactagtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3441574 3441579 . - . misc_feature unknown_2958 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3441593 3441619 . - . mRNA SPBC2G2.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.03c" ; systematic_id "SPBC2G2.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3442168 3442190 . - . mRNA SPBC2G2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.04c" ; systematic_id "SPBC2G2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3442191 3442679 . - . mRNA SPBC2G2.04c ; systematic_id "SPBC2G2.04c" ; colour "2" ; gene "mmf1 ||| pmf1 ||| SPBC2G2.04c" ; note "sequence possibly needs truncating to second met" ; Alias "mmf1" ; db_xref "SPD:04/04F06" ; synonym "pmf1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER057C and YIL051C; date=19700101 ||| term=complementation, functionally complements S. cerevisiae YIL051C; db_xref=PMID:12185840; cv=complementation; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12185840; date=20080227 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005759; mitochondrial matrix
GO:0000002; mitochondrial genome maintenance" ; primary_name "mmf1" ; product "YjgF family protein Mmf1" ;
chromosome2 GeneDB CDS 3442191 3442679 . - . mRNA SPBC2G2.04c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3442678 3442719 . - . mRNA SPBC2G2.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.04c" ; systematic_id "SPBC2G2.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3443267 3443918 . + . mRNA SPBC2G2.05 ; systematic_id "SPBC2G2.05" ; colour "7" ; gene "rpl1603 ||| rpl16c ||| SPBC2G2.05" ; Alias "rpl1603" ; db_xref "SPD:31/31G04" ; synonym "rpl16c" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL133C and YNL069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl1603" ; product "60S ribosomal protein L13/L16 (predicted)" ;
chromosome2 GeneDB CDS 3443267 3443307 . + . mRNA SPBC2G2.05 ; colour "7" ;
chromosome2 GeneDB CDS 3443366 3443918 . + . mRNA SPBC2G2.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 3443308 3443313 . + . misc_feature unknown_2959 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 3443320 3444074 . - . mRNA SPBC2G2.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.06c" ; systematic_id "SPBC2G2.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3443351 3443365 . + . misc_feature unknown_2960 ; colour "6" ; note "ctaacgcgtatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3443919 3444311 . + . mRNA SPBC2G2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.05" ; systematic_id "SPBC2G2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3444075 3446332 . - . mRNA SPBC2G2.06c ; systematic_id "SPBC2G2.06c" ; colour "7" ; gene "apl1 ||| SPBC2G2.06c" ; Alias "apl1" ; db_xref "SPD:38/38B04" ; GO "GO:0030122; AP-2 adaptor complex
GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YJR005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "apl1" ; product "AP-2 adaptor complex subunit Apl1 (predicted)" ;
chromosome2 GeneDB CDS 3444075 3445461 . - . mRNA SPBC2G2.06c ; colour "7" ;
chromosome2 GeneDB CDS 3445506 3445624 . - . mRNA SPBC2G2.06c ; colour "7" ;
chromosome2 GeneDB CDS 3445669 3445914 . - . mRNA SPBC2G2.06c ; colour "7" ;
chromosome2 GeneDB CDS 3445968 3446013 . - . mRNA SPBC2G2.06c ; colour "7" ;
chromosome2 GeneDB CDS 3446051 3446259 . - . mRNA SPBC2G2.06c ; colour "7" ;
chromosome2 GeneDB CDS 3446306 3446332 . - . mRNA SPBC2G2.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 3445462 3445473 . - . misc_feature unknown_2961 ; colour "6" ; note "ctaataattcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3445500 3445505 . - . misc_feature unknown_2962 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3445625 3445642 . - . misc_feature unknown_2963 ; colour "6" ; note "ctaatttttttatatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3445663 3445668 . - . misc_feature unknown_2964 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3445915 3445928 . - . misc_feature unknown_2965 ; colour "6" ; note "ttaacctcttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3445962 3445967 . - . misc_feature unknown_2966 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3446014 3446024 . - . misc_feature unknown_2967 ; colour "6" ; note "ctaattgacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3446045 3446050 . - . misc_feature unknown_2968 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3446260 3446275 . - . misc_feature unknown_2969 ; colour "6" ; note "ctaacttaaacaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3446300 3446305 . - . misc_feature unknown_2970 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3446331 3446347 . - . mRNA SPBC2G2.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.06c" ; systematic_id "SPBC2G2.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3446620 3447212 . - . mRNA SPBC2G2.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.07c" ; systematic_id "SPBC2G2.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3447213 3447890 . - . mRNA SPBC2G2.07c ; systematic_id "SPBC2G2.07c" ; colour "7" ; gene "SPBC2G2.07c ||| mug178" ; Alias "mug178" ; db_xref "SPD:07/07H01" ; GO "GO:0003735; structural constituent of ribosome
GO:0006413; translational initiation
GO:0005763; mitochondrial small ribosomal subunit
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL118W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug178" ; product "mitochondrial ribosomal protein subunit L51-b (predicted)" ;
chromosome2 GeneDB CDS 3447213 3447890 . - . mRNA SPBC2G2.07c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3447889 3448218 . - . mRNA SPBC2G2.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.07c" ; systematic_id "SPBC2G2.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3448976 3452152 . + . mRNA SPBC2G2.08 ; systematic_id "SPBC2G2.08" ; colour "7" ; gene "ade9 ||| SPBC2G2.08" ; Alias "ade9" ; db_xref "SPD:47/47H11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR084W and YGR204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004329; formate-tetrahydrofolate ligase activity
GO:0004477; methenyltetrahydrofolate cyclohydrolase activity
GO:0004488; methylenetetrahydrofolate dehydrogenase (NADP+) activity
GO:0009257; 10-formyltetrahydrofolate biosynthesis
GO:0009113; purine base biosynthesis
GO:0005524; ATP binding
GO:0046656; folic acid biosynthesis" ; primary_name "ade9" ; product "C-1-tetrahydrofolatesynthase/methylenetetrahydrofolatedehydrogenase/methylenetetrahydrofolatecyclohydrolase/ formyltetrahydrofolatesynthetase (predicted)" ; EC_number "6.3.4.3 ||| 1.5.1.5 ||| 1.5.1.15 ||| 2.3.1.16" ;
chromosome2 GeneDB CDS 3448976 3449103 . + . mRNA SPBC2G2.08 ; colour "7" ;
chromosome2 GeneDB CDS 3449371 3452152 . + . mRNA SPBC2G2.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 3449104 3449109 . + . misc_feature unknown_2971 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3449351 3449370 . + . misc_feature unknown_2972 ; colour "6" ; note "ctaatgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3452153 3452289 . + . mRNA SPBC2G2.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.08" ; systematic_id "SPBC2G2.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3452323 3453406 . - . mRNA SPBC2G2.09c ; systematic_id "SPBC2G2.09c" ; colour "2" ; gene "crs1 ||| mug17 ||| SPBC2G2.09c" ; Alias "crs1" ; db_xref "SPD:10/10F06" ; synonym "mug17" ; GO "GO:0007126; meiosis
GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; qualifier=predicted; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20070704 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; date=20070704 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20080908 ||| term=name description, Cyclin-like protein Regulated via Splicing; db_xref=PMID:15893732; cv=name_description; date=20070704 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:15893732; date=20080707 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "crs1" ; product "meiosis specific cyclin Crs1" ;
chromosome2 GeneDB CDS 3452323 3452540 . - . mRNA SPBC2G2.09c ; colour "2" ;
chromosome2 GeneDB CDS 3452589 3452769 . - . mRNA SPBC2G2.09c ; colour "2" ;
chromosome2 GeneDB CDS 3452922 3453077 . - . mRNA SPBC2G2.09c ; colour "2" ;
chromosome2 GeneDB CDS 3453119 3453406 . - . mRNA SPBC2G2.09c ; colour "2" ;
chromosome2 GeneDB misc_feature 3452770 3452784 . - . misc_feature unknown_2973 ; colour "6" ; note "ttaacaaattaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3452916 3452921 . - . misc_feature unknown_2974 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3453078 3453089 . - . misc_feature unknown_2975 ; colour "6" ; note "ctaacgaaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3453113 3453118 . - . misc_feature unknown_2976 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 3453746 3454535 . - . mRNA SPBC2G2.10c ; systematic_id "SPBC2G2.10c" ; colour "8" ; gene "SPBC2G2.10c ||| mug110" ; db_xref "SPD:43/43C03" ; Alias "mug110" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug110" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3453746 3454417 . - . mRNA SPBC2G2.10c ; colour "8" ;
chromosome2 GeneDB CDS 3454461 3454535 . - . mRNA SPBC2G2.10c ; colour "8" ;
chromosome2 GeneDB misc_feature 3454418 3454429 . - . misc_feature unknown_2977 ; colour "6" ; note "ttaacattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3454455 3454460 . - . misc_feature unknown_2978 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3455201 3455223 . + . mRNA SPBC2G2.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.11" ; systematic_id "SPBC2G2.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3455224 3456800 . + . mRNA SPBC2G2.11 ; systematic_id "SPBC2G2.11" ; colour "7" ; gene "SPBC2G2.11" ; db_xref "SPD:25/25D04" ; GO "GO:0004379; glycylpeptide N- tetradecanoyltransferase activity
GO:0006499; N-terminal protein myristoylation
GO:0005829; cytosol" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR195C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "N-myristoyltransferase 1 (predicted)" ; reserved_name "myr1" ; EC_number "2.3.1.97" ;
chromosome2 GeneDB CDS 3455224 3455410 . + . mRNA SPBC2G2.11 ; colour "7" ;
chromosome2 GeneDB CDS 3455481 3455605 . + . mRNA SPBC2G2.11 ; colour "7" ;
chromosome2 GeneDB CDS 3455669 3456559 . + . mRNA SPBC2G2.11 ; colour "7" ;
chromosome2 GeneDB CDS 3456603 3456800 . + . mRNA SPBC2G2.11 ; colour "7" ;
chromosome2 GeneDB misc_feature 3455411 3455416 . + . misc_feature unknown_2979 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3455462 3455480 . + . misc_feature unknown_2980 ; colour "6" ; note "ttaatgcttaccataatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3455606 3455611 . + . misc_feature unknown_2981 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3455654 3455668 . + . misc_feature unknown_2982 ; colour "6" ; note "ctgacatttctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3456560 3456565 . + . misc_feature unknown_2983 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3456586 3456602 . + . misc_feature unknown_2984 ; colour "6" ; note "ctaataattcaaaacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3456801 3456909 . + . mRNA SPBC2G2.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.11" ; systematic_id "SPBC2G2.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3457181 3457239 . + . mRNA SPBC2G2.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.12" ; systematic_id "SPBC2G2.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3457240 3458856 . + . mRNA SPBC2G2.12 ; systematic_id "SPBC2G2.12" ; colour "7" ; gene "SPBC2G2.12 ||| hrs1" ; Alias "hrs1" ; db_xref "KEGG:MAP00340; ||| KEGG:MAP00970; ||| SPD:25/25H06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004821; histidine-tRNA ligase activity
GO:0006427; histidyl-tRNA aminoacylation" ; primary_name "hrs1" ; product "mitochondrial and cytoplasmic histidine-tRNA ligase Hrs1 (predicted)" ; EC_number "6.1.1.21" ;
chromosome2 GeneDB CDS 3457240 3458856 . + . mRNA SPBC2G2.12 ; colour "7" ;
chromosome2 GeneDB CDS_parts 3458998 3460234 . - . mRNA SPBC2G2.13c ; db_xref "SPD:19/19G05" ; systematic_id "SPBC2G2.13c" ; colour "7" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR144C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004132; dCMP deaminase activity
GO:0006221; pyrimidine nucleotide biosynthetic process" ; gene "SPBC2G2.13c" ; product "deoxycytidylate deaminase (predicted)" ; EC_number "3.5.4.12" ;
chromosome2 GeneDB CDS 3458998 3459104 . - . mRNA SPBC2G2.13c ; colour "7" ;
chromosome2 GeneDB CDS 3459142 3459194 . - . mRNA SPBC2G2.13c ; colour "7" ;
chromosome2 GeneDB CDS 3459234 3459722 . - . mRNA SPBC2G2.13c ; colour "7" ;
chromosome2 GeneDB CDS 3459837 3460234 . - . mRNA SPBC2G2.13c ; colour "7" ;
chromosome2 GeneDB misc_feature 3459105 3459115 . - . misc_feature unknown_2985 ; colour "6" ; note "ctaatgctcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3459136 3459141 . - . misc_feature unknown_2986 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3459195 3459208 . - . misc_feature unknown_2987 ; colour "6" ; note "ctaacagtcgaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3459228 3459233 . - . misc_feature unknown_2988 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3459723 3459762 . - . misc_feature unknown_2989 ; colour "6" ; note "ttaactgaatattgctgaaataataatgatgacatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3459831 3459836 . - . misc_feature unknown_2990 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3460233 3461144 . - . mRNA SPBC2G2.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.13c" ; systematic_id "SPBC2G2.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3461360 3461439 . + . mRNA SPBC2G2.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.14" ; systematic_id "SPBC2G2.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3461440 3463041 . + . mRNA SPBC2G2.14 ; db_xref "SPD:25/25F12" ; systematic_id "SPBC2G2.14" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC2G2.14" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3461440 3463041 . + . mRNA SPBC2G2.14 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 3462585 3463214 . - . mRNA SPBC2G2.15c ; ID "SPBC2G2.15c" ; systematic_id "SPBC2G2.15c" ; note "mRNA from SPD210" ;
chromosome2 GeneDB CDS_parts 3463215 3464047 . - . mRNA SPBC2G2.15c ; systematic_id "SPBC2G2.15c" ; colour "7" ; gene "mrm2 ||| SPBC2G2.15c" ; Alias "mrm2" ; db_xref "SPD:10/10G09" ; GO "GO:0005739; mitochondrion
GO:0031167; rRNA methylation
GO:0008650; rRNA (uridine-2'-O-)-methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL136C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrm2" ; product "mitochondrial 2' O-ribose methyltransferase Mrm2 (predicted)" ;
chromosome2 GeneDB CDS 3463215 3463421 . - . mRNA SPBC2G2.15c ; colour "7" ;
chromosome2 GeneDB CDS 3463462 3463510 . - . mRNA SPBC2G2.15c ; colour "7" ;
chromosome2 GeneDB CDS 3463557 3463792 . - . mRNA SPBC2G2.15c ; colour "7" ;
chromosome2 GeneDB CDS 3463834 3463884 . - . mRNA SPBC2G2.15c ; colour "7" ;
chromosome2 GeneDB CDS 3463934 3464047 . - . mRNA SPBC2G2.15c ; colour "7" ;
chromosome2 GeneDB misc_feature 3463422 3463435 . - . misc_feature unknown_2991 ; colour "6" ; note "ctgacctactatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3463422 3463461 . - . intron SPBC2G2.15c ; systematic_id "SPBC2G2.15c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3463456 3463461 . - . misc_feature unknown_2992 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3463511 3463522 . - . misc_feature unknown_2993 ; colour "6" ; note "ctaacatcctag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3463511 3463556 . - . intron SPBC2G2.15c ; systematic_id "SPBC2G2.15c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3463551 3463556 . - . misc_feature unknown_2994 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3463793 3463806 . - . misc_feature unknown_2995 ; colour "6" ; note "ctaacgtttttaag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3463793 3463833 . - . intron SPBC2G2.15c ; systematic_id "SPBC2G2.15c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3463828 3463833 . - . misc_feature unknown_2996 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3463885 3463895 . - . misc_feature unknown_2997 ; colour "6" ; note "ctaattgatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3463928 3463933 . - . misc_feature unknown_2998 ; colour "6" ; note "gtactg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3464770 3464864 . + . mRNA SPBC2G2.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.16" ; systematic_id "SPBC2G2.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3464865 3466152 . + . mRNA SPBC2G2.16 ; db_xref "SPD:22/22C11" ; systematic_id "SPBC2G2.16" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009298; GDP-mannose biosynthetic process
GO:0000032; cell wall mannoprotein biosynthetic process
GO:0006486; protein amino acid glycosylation
GO:0004476; mannose-6-phosphate isomerase activity" ; gene "SPBC2G2.16" ; product "mannose-6-phosphate isomerase (predicted)" ; EC_number "5.3.1.8" ;
chromosome2 GeneDB CDS 3464865 3464990 . + . mRNA SPBC2G2.16 ; colour "7" ;
chromosome2 GeneDB CDS 3465040 3466152 . + . mRNA SPBC2G2.16 ; colour "7" ;
chromosome2 GeneDB misc_feature 3464991 3464996 . + . misc_feature unknown_2999 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3465019 3465039 . + . misc_feature unknown_3000 ; colour "6" ; note "ctaattgaattttctatacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3466153 3466205 . + . mRNA SPBC2G2.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC2G2.16" ; systematic_id "SPBC2G2.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3466570 3467529 . - . mRNA SPBC2G2.17c ; db_xref "SPD:13/13F02" ; systematic_id "SPBC2G2.17c" ; colour "10" ; GO "GO:0008422; beta-glucosidase activity
GO:0009277; cell wall (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL123W and YKR042W and YJL116C and YNL066W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC2G2.17c" ; product "beta-glucosidase Psu2 (predicted)" ;
chromosome2 GeneDB CDS 3466570 3467529 . - . mRNA SPBC2G2.17c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3469173 3469342 . + . mRNA SPBC1718.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1718.01" ; systematic_id "SPBC1718.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3469343 3471670 . + . mRNA SPBC1718.01 ; systematic_id "SPBC1718.01" ; colour "2" ; gene "pop1 ||| ste16 ||| SPBC2G2.18 ||| SPBC1718.01" ; Alias "pop1" ; db_xref "SPD:33/33G07" ; synonym "ste16 ||| SPBC2G2.18" ; GO "GO:0019005; SCF ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006995; cellular response to nitrogen starvation
GO:0000747; conjugation with cellular fusion
GO:0008054; cyclin catabolism
GO:0006511; ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA replication defects, endoreduplication; date=20100730 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9990507; date=20100730 ||| term=F-box protein; date=19700101 ||| term=WD repeat protein; db_xref=PMID:9203581; date=19700101 ||| term=orthologous to S. cerevisiae YFL009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Cdc1; db_xref=PMID:9203581; date=20100825 ||| term=target is Cdc18; db_xref=PMID:9203581; date=20100825 ||| term=target is Rum1; db_xref=PMID:9203581; date=20100825 ||| term=target is Cig2; db_xref=PMID:14970237; date=20100825 ||| term=phenotype, sterile; db_xref=PMID:9472077; date=20101013 ||| term=name description, STErile; db_xref=PMID:9472077; date=20101013" ; primary_name "pop1" ; product "cullin 1 adaptor protein Pop1" ;
chromosome2 GeneDB CDS 3469343 3471670 . + . mRNA SPBC1718.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 3471609 3471709 . + . misc_feature unknown_3001 ; note "nominal overlap with cosmid SPBC2G2 and cosmid SPBC1718" ;
chromosome2 GeneDB 3'-UTR 3471671 3471758 . + . mRNA SPBC1718.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1718.01" ; systematic_id "SPBC1718.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3472319 3474169 . + . mRNA SPBC1718.02 ; systematic_id "SPBC1718.02" ; colour "2" ; gene "hop1 ||| SPBC1718.02" ; db_xref "SPD:26/26C01" ; Alias "hop1" ; GO "GO:0030998; linear element
GO:0003677; DNA binding
GO:0030999; linear element formation
GO:0019787; small conjugating protein ligase activity
GO:0051276; chromosome organization
GO:0032446; protein modification by small protein conjugation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YIL072W; db_xref=PMID:15226405; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hop1" ; product "linear element associated protein Hop1" ;
chromosome2 GeneDB CDS 3472319 3472413 . + . mRNA SPBC1718.02 ; colour "2" ;
chromosome2 GeneDB CDS 3472462 3472609 . + . mRNA SPBC1718.02 ; colour "2" ;
chromosome2 GeneDB CDS 3472654 3472822 . + . mRNA SPBC1718.02 ; colour "2" ;
chromosome2 GeneDB CDS 3472861 3473101 . + . mRNA SPBC1718.02 ; colour "2" ;
chromosome2 GeneDB CDS 3473142 3473532 . + . mRNA SPBC1718.02 ; colour "2" ;
chromosome2 GeneDB CDS 3473580 3473805 . + . mRNA SPBC1718.02 ; colour "2" ;
chromosome2 GeneDB CDS 3473853 3474169 . + . mRNA SPBC1718.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 3472414 3472419 . + . misc_feature unknown_3002 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3472447 3472461 . + . misc_feature unknown_3003 ; colour "6" ; note "ctaacagaaggcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3472610 3472615 . + . misc_feature unknown_3004 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3472642 3472653 . + . misc_feature unknown_3005 ; colour "6" ; note "ctaatattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3472823 3472828 . + . misc_feature unknown_3006 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3472832 3472860 . + . misc_feature unknown_3007 ; colour "6" ; note "ttaacagacttcatgagagttttatcaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3473102 3473107 . + . misc_feature unknown_3008 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3473131 3473141 . + . misc_feature unknown_3009 ; colour "6" ; note "ctaatctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3473533 3473538 . + . misc_feature unknown_3010 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3473561 3473579 . + . misc_feature unknown_3011 ; colour "6" ; note "ctaacaatattttacacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3473806 3473811 . + . misc_feature unknown_3012 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3473838 3473852 . + . misc_feature unknown_3013 ; colour "6" ; note "ctaacattatctaag, splice branch and acceptor" ;
chromosome2 GeneDB LTR 3474256 3474555 . + . LTR unknown_3014 ; note "Tf2-type LTR" ;
chromosome2 GeneDB 5'-UTR 3474712 3474728 . + . mRNA SPBC1718.03 ; Alias "ker1" ; ID "SPBC1718.03" ; db_xref "EMBL:AB079137" ; systematic_id "SPBC1718.03" ; primary_name "ker1" ;
chromosome2 GeneDB CDS_parts 3474729 3475172 . + . mRNA SPBC1718.03 ; systematic_id "SPBC1718.03" ; colour "2" ; gene "ker1 ||| SPBC1718.03" ; Alias "ker1" ; db_xref "SPD:03/03G11" ; GO "GO:0005730; nucleolus
GO:0006360; transcription from RNA polymerase I promoter
GO:0005736; DNA-directed RNA polymerase I complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YDR156W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15647272; date=20090213 ||| term=name description, lysine (K) and glutamic acid (E) Rich protein; db_xref=PMID:15647272; date=20100723" ; primary_name "ker1" ; product "DNA-directed RNA polymerase I complex subunit Ker1" ;
chromosome2 GeneDB CDS 3474729 3475172 . + . mRNA SPBC1718.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3475173 3475308 . + . mRNA SPBC1718.03 ; Alias "ker1" ; ID "SPBC1718.03" ; db_xref "EMBL:AB079137" ; systematic_id "SPBC1718.03" ; primary_name "ker1" ;
chromosome2 GeneDB 5'-UTR 3475561 3475915 . + . mRNA SPBC1718.04 ; ID "SPBC1718.04" ; systematic_id "SPBC1718.04" ; note "mRNA from AU006920" ;
chromosome2 GeneDB CDS_parts 3475916 3477995 . + . mRNA SPBC1718.04 ; db_xref "SPD:46/46E05" ; systematic_id "SPBC1718.04" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBL011W and YKR067W; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, predominantly uniformly single copy (one to one); date=19700101" ; GO "GO:0004366; glycerol-3-phosphate O-acyltransferase activity
GO:0008654; phospholipid biosynthesis
GO:0005783; endoplasmic reticulum" ; gene "SPBC1718.04" ; product "glycerol-3-phosphate O-acyltransferase (predicted)" ; EC_number "2.3.1.15" ;
chromosome2 GeneDB CDS 3475916 3475961 . + . mRNA SPBC1718.04 ; colour "7" ;
chromosome2 GeneDB CDS 3476014 3477995 . + . mRNA SPBC1718.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 3475962 3475967 . + . misc_feature unknown_3015 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3476000 3476013 . + . misc_feature unknown_3016 ; colour "6" ; note "ttaatgaaccccag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3477996 3478137 . + . mRNA SPBC1718.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1718.04" ; systematic_id "SPBC1718.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3478523 3478571 . + . mRNA SPBC1718.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1718.05" ; systematic_id "SPBC1718.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3478572 3479552 . + . mRNA SPBC1718.05 ; systematic_id "SPBC1718.05" ; colour "7" ; gene "trs31 ||| SPBC1718.05" ; Alias "trs31" ; db_xref "SPD:14/14B07" ; GO "GO:0030008; TRAPP complex
GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR472W; date=20080312 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trs31" ; product "TRAPP complex subunit Trs31 (predicted)" ;
chromosome2 GeneDB CDS 3478572 3478780 . + . mRNA SPBC1718.05 ; colour "7" ;
chromosome2 GeneDB CDS 3478825 3479009 . + . mRNA SPBC1718.05 ; colour "7" ;
chromosome2 GeneDB CDS 3479110 3479234 . + . mRNA SPBC1718.05 ; colour "7" ;
chromosome2 GeneDB CDS 3479442 3479552 . + . mRNA SPBC1718.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 3478781 3478786 . + . misc_feature unknown_3017 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3478813 3478824 . + . misc_feature unknown_3018 ; colour "6" ; note "ctaatgctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3479010 3479015 . + . misc_feature unknown_3019 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3479094 3479109 . + . misc_feature unknown_3020 ; colour "6" ; note "ctaactggagctatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3479235 3479240 . + . misc_feature unknown_3021 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3479430 3479441 . + . misc_feature unknown_3022 ; colour "6" ; note "ctaacaatctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3479553 3479734 . + . mRNA SPBC1718.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1718.05" ; systematic_id "SPBC1718.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3479843 3479897 . + . mRNA SPBC1718.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1718.06" ; systematic_id "SPBC1718.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3479898 3482609 . + . mRNA SPBC1718.06 ; systematic_id "SPBC1718.06" ; colour "2" ; gene "msp1 ||| SPBC1718.06" ; Alias "msp1" ; db_xref "SPD:33/33H10" ; synonym "mgm1" ; GO "GO:0003924; GTPase activity
GO:0007005; mitochondrion organization and biogenesis
GO:0000002; mitochondrial genome maintenance
GO:0008053; mitochondrial fusion
GO:0008053; mitochondrial fusion
GO:0000002; mitochondrial genome maintenance
GO:0005525; GTP binding
GO:0005515; protein binding
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, optic atrophy; date=19700101 ||| term=orthologous to S. cerevisiae YOR211C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20100304" ; primary_name "msp1" ; product "mitochondrial dynamin family GTPase Msp1" ;
chromosome2 GeneDB CDS 3479898 3482609 . + . mRNA SPBC1718.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3482870 3483453 . - . mRNA SPBC1718.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1718.07c" ; systematic_id "SPBC1718.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3483454 3484668 . - . mRNA SPBC1718.07c ; systematic_id "SPBC1718.07c" ; colour "2" ; gene "zfs1 ||| moc4 ||| SPBC1718.07c" ; Alias "zfs1" ; db_xref "SPD:32/32F07" ; synonym "moc4" ; GO "GO:0005634; nucleus
GO:0017091; AU-rich element binding
GO:0005515; protein binding
GO:0006402; mRNA catabolic process
GO:0007093; mitotic checkpoint
GO:0007094; mitotic spindle checkpoint
GO:0045839; negative regulation of mitosis
GO:0031030; negative regulation of septation initiation signaling
GO:0000750; pheromone-dependent signal transduction during conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10462526; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=gene expression, expressed in response to nitrogen starvation; cv=gene_ex; db_xref=PMID:8534915; date=19700101 ||| term=orthologous to S. cerevisiae YLR136C and YDR151C; date=19700101 ||| term=target is azr1; db_xref=PMID:18042546; date=20071210 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Multicopy suppressor of Overexpressed Cyr1; date=20100705" ; primary_name "zfs1" ; product "CCCH tandem zinc finger protein, human Tristetraprolin homolog Zfs1, involved in mRNA catabolism" ;
chromosome2 GeneDB CDS 3483454 3484668 . - . mRNA SPBC1718.07c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3484667 3487433 . - . mRNA SPBC1718.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1718.07c" ; systematic_id "SPBC1718.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3484669 3489302 . + . misc_feature unknown_3023 ; note "low complexity gene-free region" ;
chromosome2 GeneDB LTR 3489303 3489651 . - . LTR unknown_3024 ; note "Tf2-type LTR" ;
chromosome2 GeneDB LTR 3489848 3490095 . - . LTR unknown_3025 ; note "Tf1-type LTR" ;
chromosome2 GeneDB LTR 3489943 3490295 . - . LTR unknown_3026 ; note "Tf1-type LTR" ;
chromosome2 GeneDB LTR 3490384 3490610 . - . LTR unknown_3027 ; note "Tf2-type LTR ||| 242 (-1) 28 153 Tf1-type LTR" ;
chromosome2 GeneDB misc_feature 3490478 3490599 . + . misc_feature unknown_3028 ; note "nominal overlap with cosmid SPBC1718 and cosmid SPBPB7E8" ;
chromosome2 GeneDB 5'-UTR 3491819 3494516 . + . mRNA SPBPB7E8.01 ; ID "SPBPB7E8.01" ; db_xref "PMID:18488015" ; systematic_id "SPBPB7E8.01" ; synonym "SPNG1823" ; note "From Solexa transcript SPNG1823 ||| This UTR seems to be specific for the meiotic transcript" ;
chromosome2 GeneDB CDS_parts 3494517 3496226 . + . mRNA SPBPB7E8.01 ; systematic_id "SPBPB7E8.01" ; colour "8" ; gene "SPBPB7E8.01" ; note "low similarity to metallopeptidases" ; db_xref "SPD:49/49B04" ; GO "GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3494517 3496226 . + . mRNA SPBPB7E8.01 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 3496227 3496777 . + . mRNA SPBPB7E8.01 ; ID "SPBPB7E8.01" ; systematic_id "SPBPB7E8.01" ; note "mRNA from AU013013" ;
chromosome2 GeneDB 5'-UTR 3498434 3499131 . + . mRNA SPBPB7E8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB7E8.02" ; systematic_id "SPBPB7E8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3499132 3501381 . + . mRNA SPBPB7E8.02 ; db_xref "SPD:49/49D12" ; systematic_id "SPBPB7E8.02" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR177W and YDR505C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBPB7E8.02" ; product "PSP1 family protein" ;
chromosome2 GeneDB CDS 3499132 3501381 . + . mRNA SPBPB7E8.02 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 3501382 3501952 . + . mRNA SPBPB7E8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB7E8.02" ; systematic_id "SPBPB7E8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3502339 3502415 . + . mRNA SPBC1105.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.01" ; systematic_id "SPBC1105.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3502416 3505505 . + . mRNA SPBC1105.01 ; systematic_id "SPBC1105.01" ; colour "7" ; gene "SPBPB7E8.03 ||| SPBC1105.01 ||| rrp12" ; Alias "rrp12" ; db_xref "SPD:49/49F08" ; synonym "SPBPB7E8.03" ; GO "GO:0005634; nucleus
GO:0030490; processing of 20S pre-rRNA" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; evidence=ISS; db_xref=PMID:14729571; date=19700101 ||| term=related to S. pombe SPAPB8E5.07c; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20080312 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rrp12" ; product "rRNA processing protein Rrp12-like (predicted)" ;
chromosome2 GeneDB CDS 3502416 3504888 . + . mRNA SPBC1105.01 ; colour "7" ;
chromosome2 GeneDB CDS 3504931 3505395 . + . mRNA SPBC1105.01 ; colour "7" ;
chromosome2 GeneDB CDS 3505438 3505505 . + . mRNA SPBC1105.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 3504455 3504547 . + . misc_feature unknown_3029 ; note "cominal overlap with cosmid c1105" ;
chromosome2 GeneDB misc_feature 3504889 3504894 . + . misc_feature unknown_3030 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3504916 3504930 . + . misc_feature unknown_3031 ; colour "6" ; note "ctaactttaatccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3505396 3505401 . + . misc_feature unknown_3032 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3505426 3505437 . + . misc_feature unknown_3033 ; colour "6" ; note "ctaacatttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3505506 3505693 . + . mRNA SPBC1105.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.01" ; systematic_id "SPBC1105.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3505802 3506050 . - . mRNA SPBC1105.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.02c" ; systematic_id "SPBC1105.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3506051 3507307 . - . mRNA SPBC1105.02c ; systematic_id "SPBC1105.02c" ; colour "2" ; gene "lys4 ||| SPBC1105.02c" ; Alias "lys4" ; db_xref "SPD:20/20A12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL131W and YDL182W; date=19700101 ||| term=gene expression, transcriptionally regulated by Phx1; db_xref=PMID:16299000; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004410; homocitrate synthase activity
GO:0019878; lysine biosynthesis via aminoadipic acid
GO:0005634; nucleus
GO:0005739; mitochondrion" ; primary_name "lys4" ; product "homocitrate synthase (predicted)" ; EC_number "2.3.3.14" ;
chromosome2 GeneDB CDS 3506051 3507307 . - . mRNA SPBC1105.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3507308 3507472 . - . mRNA SPBC1105.02c ; ID "SPBC1105.02c" ; systematic_id "SPBC1105.02c" ; note "mRNA from AU007953" ;
chromosome2 GeneDB 3'-UTR 3508000 3508285 . - . mRNA SPBC1105.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.03c" ; systematic_id "SPBC1105.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3508286 3508933 . - . mRNA SPBC1105.03c ; systematic_id "SPBC1105.03c" ; colour "7" ; gene "mrpl16 ||| SPBC1105.03c" ; Alias "mrpl16" ; db_xref "SPD:07/07D11" ; GO "GO:0003735; structural constituent of ribosome
GO:0000048; peptidyltransferase activity
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL038W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl16" ; product "mitochondrial ribosomal protein subunit L16 (predicted)" ;
chromosome2 GeneDB CDS 3508286 3508933 . - . mRNA SPBC1105.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3508932 3509101 . - . mRNA SPBC1105.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.03c" ; systematic_id "SPBC1105.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3509703 3509903 . - . mRNA SPBC1105.19 ; Alias "tam12" ; systematic_id "SPBC1105.19" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "tam12" ; gene "SPBC1105.19" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3509703 3509903 . - . mRNA SPBC1105.19 ; colour "8" ;
chromosome2 GeneDB 5'-UTR 3509904 3510054 . - . mRNA SPBC1105.19 ; db_xref "PMID:21270388" ; systematic_id "SPBC1105.19" ;
chromosome2 GeneDB 3'-UTR 3510534 3510770 . - . mRNA SPBC1105.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.04c" ; systematic_id "SPBC1105.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3510771 3512339 . - . mRNA SPBC1105.04c ; systematic_id "SPBC1105.04c" ; colour "2" ; gene "cbp1 ||| abp1 ||| SPBC1105.04c" ; Alias "cbp1" ; db_xref "SPD:33/33B10" ; synonym "abp1" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0019237; centromeric DNA binding
GO:0046983; protein dimerization activity
GO:0016570; histone modification
GO:0030702; chromatin silencing at centromere
GO:0000780; condensed nuclear chromosome, pericentric region
GO:0000790; nuclear chromatin
GO:0005515; protein binding
GO:0006270; DNA replication initiation
GO:0006270; DNA replication initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9024682; date=20070716 ||| term=phenotype, cell morphology, misshapen cells; qualifier=low_penetrance; db_xref=PMID:9024682; date=20100727 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; db_xref=PMID:9024682; date=20100727 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=CENP-B box; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "cbp1" ; product "CENP-B homolog" ;
chromosome2 GeneDB CDS 3510771 3512339 . - . mRNA SPBC1105.04c ; colour "2" ;
chromosome2 GeneDB misc_RNA 3510949 3512276 . + . misc_RNA SPNCRNA.574 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.574" ; synonym "SPNG2AF47" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB 5'-UTR 3512338 3512350 . - . mRNA SPBC1105.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.04c" ; systematic_id "SPBC1105.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3512862 3513996 . + . misc_RNA SPNCRNA.421 ; db_xref "PMID:18488015" ; synonym "SPNG1834" ; systematic_id "SPNCRNA.421" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 3514712 3515137 . + . mRNA SPBC1105.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.05" ; systematic_id "SPBC1105.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3515138 3516361 . + . mRNA SPBC1105.05 ; systematic_id "SPBC1105.05" ; colour "2" ; gene "exg1 ||| SPBC1105.05" ; Alias "exg1" ; db_xref "SPD:19/19E04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR300W and YOR190W and YDR261C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=gene expression, expression cell cycle regulated; db_xref=PMID:20852022; date=20100924 ||| term=gene expression, transcriptionally regulated by Sep2; db_xref=PMID:20852022; date=20100924 ||| term=phenotype, no obvious phenotype; qualifier=deletion; db_xref=PMID:20852022; date=20100924" ; GO "GO:0004338; glucan 1,3-beta-glucosidase activity
GO:0046557; glucan endo-1,6-beta-glucosidase activity
GO:0005576; extracellular region
GO:0000935; barrier septum
GO:0070879; fungal-type cell wall beta-glucan metabolic process" ; primary_name "exg1" ; product "glucan 1,6-beta-glucosidase Exg1" ; EC_number "3.2.1.58" ;
chromosome2 GeneDB CDS 3515138 3516361 . + . mRNA SPBC1105.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3516362 3516528 . + . mRNA SPBC1105.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.05" ; systematic_id "SPBC1105.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3517461 3517488 . + . mRNA SPBC1105.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.06" ; systematic_id "SPBC1105.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3517489 3518208 . + . mRNA SPBC1105.06 ; systematic_id "SPBC1105.06" ; colour "2" ; gene "pmc4 ||| SPBC1105.06 ||| med4" ; Alias "pmc4" ; db_xref "SPD:43/43A03" ; synonym "med4" ; GO "GO:0016592; mediator complex
GO:0006366; transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10625684; date=19700101 ||| term=orthologous to S. cerevisiae YOR174W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "pmc4" ; product "mediator complex subunit Pmc4" ;
chromosome2 GeneDB CDS 3517489 3518208 . + . mRNA SPBC1105.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3518209 3518290 . + . mRNA SPBC1105.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.06" ; systematic_id "SPBC1105.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3518343 3518465 . - . mRNA SPBC1105.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.07c" ; systematic_id "SPBC1105.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3518466 3520004 . - . mRNA SPBC1105.07c ; db_xref "SPD:44/44H07" ; systematic_id "SPBC1105.07c" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006406; mRNA export from nucleus
GO:0005643; nuclear pore
GO:0003690; double-stranded DNA binding
GO:0003723; RNA binding
GO:0000346; transcription export complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL072W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1105.07c" ; product "nuclear pore associated protein Thp1-Sac3 complex subunit (predicted)" ;
chromosome2 GeneDB CDS 3518466 3518754 . - . mRNA SPBC1105.07c ; colour "7" ;
chromosome2 GeneDB CDS 3518797 3519048 . - . mRNA SPBC1105.07c ; colour "7" ;
chromosome2 GeneDB CDS 3519104 3519601 . - . mRNA SPBC1105.07c ; colour "7" ;
chromosome2 GeneDB CDS 3519649 3519806 . - . mRNA SPBC1105.07c ; colour "7" ;
chromosome2 GeneDB CDS 3519873 3520004 . - . mRNA SPBC1105.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 3518755 3518767 . - . misc_feature unknown_3034 ; colour "6" ; note "ctaatttaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3518791 3518796 . - . misc_feature unknown_3035 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3519049 3519061 . - . misc_feature unknown_3036 ; colour "6" ; note "ctaatcaaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3519098 3519103 . - . misc_feature unknown_3037 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3519602 3519620 . - . misc_feature unknown_3038 ; colour "6" ; note "ctcacttttgtttttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3519643 3519648 . - . misc_feature unknown_3039 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3519807 3519821 . - . misc_feature unknown_3040 ; colour "6" ; note "ctaaccgtgataaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3519867 3519872 . - . misc_feature unknown_3041 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3520003 3520104 . - . mRNA SPBC1105.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.07c" ; systematic_id "SPBC1105.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3520268 3520360 . + . mRNA SPBC1105.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.08" ; systematic_id "SPBC1105.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3520361 3522398 . + . mRNA SPBC1105.08 ; db_xref "SPD:46/46D04" ; systematic_id "SPBC1105.08" ; colour "10" ; GO "GO:0010008; endosome membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR083C and YDR107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1105.08" ; product "EMP70 family" ;
chromosome2 GeneDB CDS 3520361 3520559 . + . mRNA SPBC1105.08 ; colour "10" ;
chromosome2 GeneDB CDS 3520708 3522398 . + . mRNA SPBC1105.08 ; colour "10" ;
chromosome2 GeneDB misc_feature 3520560 3520565 . + . misc_feature unknown_3042 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3520693 3520707 . + . misc_feature unknown_3043 ; colour "6" ; note "ctaacttcactttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3522399 3522574 . + . mRNA SPBC1105.08 ; ID "SPBC1105.08" ; systematic_id "SPBC1105.08" ; note "mRNA from AU012819" ;
chromosome2 GeneDB 5'-UTR 3522799 3522874 . + . mRNA SPBC1105.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.09" ; systematic_id "SPBC1105.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3522875 3523684 . + . mRNA SPBC1105.09 ; systematic_id "SPBC1105.09" ; colour "2" ; gene "ubc15 ||| SPBC1105.09" ; note "Note ubc15 is truncated with respect to YDR054C" ; Alias "ubc15" ; db_xref "SPD:10/10D02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR054C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005634; nucleus
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0016567; protein ubiquitination" ; primary_name "ubc15" ; product "ubiquitin conjugating enzyme Ubc15" ; EC_number "6.3.2.19" ;
chromosome2 GeneDB CDS 3522875 3522919 . + . mRNA SPBC1105.09 ; colour "2" ;
chromosome2 GeneDB CDS 3523002 3523145 . + . mRNA SPBC1105.09 ; colour "2" ;
chromosome2 GeneDB CDS 3523224 3523253 . + . mRNA SPBC1105.09 ; colour "2" ;
chromosome2 GeneDB CDS 3523330 3523555 . + . mRNA SPBC1105.09 ; colour "2" ;
chromosome2 GeneDB CDS 3523626 3523684 . + . mRNA SPBC1105.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 3522920 3522925 . + . misc_feature unknown_3044 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3522989 3523001 . + . misc_feature unknown_3045 ; colour "6" ; note "ctgatagatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3523146 3523151 . + . misc_feature unknown_3046 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3523206 3523223 . + . misc_feature unknown_3047 ; colour "6" ; note "ctaacctcgaaaaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3523254 3523259 . + . misc_feature unknown_3048 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3523317 3523329 . + . misc_feature unknown_3049 ; colour "6" ; note "ctaacggtaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3523556 3523561 . + . misc_feature unknown_3050 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3523612 3523625 . + . misc_feature unknown_3051 ; colour "6" ; note "ctaactttttccag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3523685 3524065 . + . mRNA SPBC1105.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.09" ; systematic_id "SPBC1105.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3524560 3524672 . + . mRNA SPBC1105.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.10" ; systematic_id "SPBC1105.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3524673 3528681 . + . mRNA SPBC1105.10 ; systematic_id "SPBC1105.10" ; colour "2" ; gene "rav1 ||| SPBC1105.10" ; Alias "rav1" ; db_xref "SPD:48/48F07" ; GO "GO:0043291; RAVE complex
GO:0005737; cytoplasm
GO:0010008; endosome membrane
GO:0032403; protein complex binding
GO:0070072; vacuolar proton-transporting two- sector ATPase complex assembly
GO:0045324; late endosome to vacuole transport
GO:0071277; cellular response to calcium ion
GO:0042493; response to drug
GO:0071294; cellular response to zinc ion
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YJR033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rav1" ; product "RAVE complex subunit Rav1" ;
chromosome2 GeneDB CDS 3524673 3524759 . + . mRNA SPBC1105.10 ; colour "2" ;
chromosome2 GeneDB CDS 3524875 3528681 . + . mRNA SPBC1105.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 3524760 3524765 . + . misc_feature unknown_3052 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3524860 3524874 . + . misc_feature unknown_3053 ; colour "6" ; note "ttaactaaatggtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3528682 3528735 . + . mRNA SPBC1105.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.10" ; systematic_id "SPBC1105.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3528795 3529118 . - . mRNA SPBC1105.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.11c" ; systematic_id "SPBC1105.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3529119 3529529 . - . mRNA SPBC1105.11c ; Alias "hht3" ; systematic_id "SPBC1105.11c" ; synonym "h3.3" ; colour "2" ; GO "GO:0003677; DNA binding
GO:0006333; chromatin assembly or disassembly
GO:0000788; nuclear nucleosome
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0030702; chromatin silencing at centromere
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0030702; chromatin silencing at centromere
GO:0032015; regulation of Ran protein signal transduction
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR010W and YNL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; residue=S10; cv=pt_mod; date=20090213 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K4|K9; cv=pt_mod; date=20100311 ||| term=target of Hrk1; qualifier=phosphorylated_by; db_xref=PMID:20929775; date=20101115" ; primary_name "hht3" ; product "histone H3 h3.3" ;
chromosome2 GeneDB CDS 3529119 3529529 . - . mRNA SPBC1105.11c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3529528 3529564 . - . mRNA SPBC1105.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.11c" ; systematic_id "SPBC1105.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3529728 3529766 . + . mRNA SPBC1105.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.12" ; systematic_id "SPBC1105.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3529767 3530078 . + . mRNA SPBC1105.12 ; systematic_id "SPBC1105.12" ; colour "2" ; gene "hhf3 ||| h4.3 ||| SPBC1105.12" ; Alias "hhf3" ; db_xref "SPD:39/39G04" ; synonym "h4.3" ; GO "GO:0003677; DNA binding
GO:0006334; nucleosome assembly
GO:0000788; nuclear nucleosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR009C and YNL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K20; cv=pt_mod; date=20100311" ; primary_name "hhf3" ; product "histone H4 h4.3" ;
chromosome2 GeneDB CDS 3529767 3530078 . + . mRNA SPBC1105.12 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3530079 3530333 . + . mRNA SPBC1105.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.12" ; systematic_id "SPBC1105.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3530807 3530914 . + . misc_RNA SPNCRNA.422 ; db_xref "PMID:18488015" ; synonym "SPNG1836" ; systematic_id "SPNCRNA.422" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 3531760 3532188 . - . mRNA SPBC1105.13c ; db_xref "SPD:03/03E06" ; systematic_id "SPBC1105.13c" ; colour "8" ; GO "GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC1105.13c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3531760 3532188 . - . mRNA SPBC1105.13c ; colour "8" ;
chromosome2 GeneDB CDS_parts 3532931 3534844 . + . mRNA SPBC1105.14 ; systematic_id "SPBC1105.14" ; colour "2" ; gene "rsv2 ||| SPBC1105.14" ; Alias "rsv2" ; db_xref "SPD:26/26F12" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016563; transcriptional activator activity
GO:0010673; positive regulation of transcription from RNA polymerase II promoter, meiotic
GO:0051039; positive regulation of transcription, meiotic" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YDL020C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17927811; date=20080721 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080721 ||| term=gene expression, transcriptionally activates stress related genes; qualifier=during_sporulation; cv=gene_ex; db_xref=PMID:17927811; date=20080721 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17927811; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rsv2" ; product "transcription factor Rsv2" ;
chromosome2 GeneDB CDS 3532931 3534844 . + . mRNA SPBC1105.14 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3534845 3535226 . + . mRNA SPBC1105.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.14" ; systematic_id "SPBC1105.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3535394 3535402 . - . mRNA SPBC1105.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.15c" ; systematic_id "SPBC1105.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3535403 3536305 . - . mRNA SPBC1105.15c ; systematic_id "SPBC1105.15c" ; colour "7" ; gene "htd2 ||| SPBC1105.15c" ; Alias "htd2" ; db_xref "SPD:12/12D11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR067W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0005739; mitochondrion
GO:0019171; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
GO:0006633; fatty acid biosynthesis" ; primary_name "htd2" ; product "3-hydroxyacyl-ACP dehydratase Htd2 (predicted)" ; EC_number "4.2.1.-" ;
chromosome2 GeneDB CDS 3535403 3536305 . - . mRNA SPBC1105.15c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3536304 3536714 . - . mRNA SPBC1105.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.15c" ; systematic_id "SPBC1105.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3537089 3537425 . + . mRNA SPBC887.22 ; Alias "new19" ; systematic_id "SPBC887.22" ; GO "GO:0045047; protein targeting to ER
GO:0006465; signal peptide processing
GO:0005787; signal peptidase complex" ; controlled_curation "term=orthologous to S. cerevisiae YJR010C-A; date=20091208 ||| term=conserved in Fungi; date=20100427 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "7" ; primary_name "new19" ; gene "SPBC887.22" ; product "signal peptidase complex subunit Spc1 (predicted)" ;
chromosome2 GeneDB CDS 3537089 3537172 . + . mRNA SPBC887.22 ; colour "7" ;
chromosome2 GeneDB CDS 3537218 3537304 . + . mRNA SPBC887.22 ; colour "7" ;
chromosome2 GeneDB CDS 3537360 3537425 . + . mRNA SPBC887.22 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3537210 3537559 . - . mRNA SPBC1105.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.16c" ; systematic_id "SPBC1105.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3537560 3537883 . - . mRNA SPBC1105.16c ; systematic_id "SPBC1105.16c" ; colour "7" ; gene "rpr2 ||| SPBC1105.16c" ; Alias "rpr2" ; db_xref "SPD:01/01G04" ; GO "GO:0008033; tRNA processing
GO:0005655; nucleolar ribonuclease P complex
GO:0004526; ribonuclease P activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpr2" ; product "RNase P subunit Rpr2 (predicted)" ;
chromosome2 GeneDB CDS 3537560 3537883 . - . mRNA SPBC1105.16c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3537882 3538034 . - . mRNA SPBC1105.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.16c" ; systematic_id "SPBC1105.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3538582 3538600 . + . mRNA SPBC1105.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.17" ; systematic_id "SPBC1105.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3538601 3538963 . + . mRNA SPBC1105.17 ; systematic_id "SPBC1105.17" ; colour "2" ; gene "cnp1 ||| sim2 ||| SPBC1105.17" ; Alias "cnp1" ; db_xref "SPD:02/02E03" ; synonym "sim2" ; GO "GO:0043505; centromere-specific nucleosome
GO:0000780; condensed nuclear chromosome, pericentric region
GO:0000939; inner kinetochore of condensed chromosome
GO:0019237; centromeric DNA binding
GO:0005515; protein binding
GO:0031508; centric heterochromatin formation
GO:0030702; chromatin silencing at centromere
GO:0051382; kinetochore assembly
GO:0000070; mitotic sister chromatid segregation
GO:0034501; protein localization to kinetochore
GO:0031134; sister chromatid biorientation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:10864871; date=20100723 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YKL049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CenH3 ortholog; date=20090423 ||| term=histone fold; date=19700101 ||| term=name description, Silencng In the Middle of the centromere; date=20100727" ; primary_name "cnp1" ; product "centromere-specific histone H3 CENP-A" ;
chromosome2 GeneDB CDS 3538601 3538963 . + . mRNA SPBC1105.17 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3539188 3539203 . - . mRNA SPBC1105.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.18c" ; systematic_id "SPBC1105.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3539204 3539692 . - . mRNA SPBC1105.18c ; systematic_id "SPBC1105.18c" ; colour "7" ; gene "SPBC1105.18c ||| SPBC887.21c" ; db_xref "SPD:50/50B06" ; synonym "SPBC887.21c" ; GO "GO:0004045; aminoacyl-tRNA hydrolase activity
GO:0005739; mitochondrion
GO:0006415; mitochondrial translation termination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR281C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "peptide release factor (predicted)" ;
chromosome2 GeneDB CDS 3539204 3539692 . - . mRNA SPBC1105.18c ; colour "7" ;
chromosome2 GeneDB misc_feature 3539433 3539436 . + . misc_feature unknown_3054 ; note "nominal overlap with cosmid SPBC887 and cosmid SPBC1105" ;
chromosome2 GeneDB 5'-UTR 3539691 3539902 . - . mRNA SPBC1105.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1105.18c" ; systematic_id "SPBC1105.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3540120 3540221 . + . mRNA SPBC887.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.01" ; systematic_id "SPBC887.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3540222 3540758 . + . mRNA SPBC887.01 ; db_xref "SPD:42/42C05" ; systematic_id "SPBC887.01" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0019509; methionine salvage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC887.01" ; product "acireductone dioxygenase family (predicted)" ;
chromosome2 GeneDB CDS 3540222 3540758 . + . mRNA SPBC887.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3540759 3540780 . + . mRNA SPBC887.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.01" ; systematic_id "SPBC887.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3541004 3541261 . + . mRNA SPBC887.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.02" ; systematic_id "SPBC887.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3541262 3543376 . + . mRNA SPBC887.02 ; db_xref "SPD:37/37D02" ; systematic_id "SPBC887.02" ; colour "7" ; GO "GO:0006821; chloride transport
GO:0016021; integral to membrane
GO:0005247; voltage-gated chloride channel activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC887.02" ; product "ClC chloride channel (predicted)" ;
chromosome2 GeneDB CDS 3541262 3541391 . + . mRNA SPBC887.02 ; colour "7" ;
chromosome2 GeneDB CDS 3541503 3543376 . + . mRNA SPBC887.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 3541392 3541397 . + . misc_feature unknown_3055 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3541487 3541502 . + . misc_feature unknown_3056 ; colour "6" ; note "ctgacatttttggaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3543377 3543807 . + . mRNA SPBC887.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.02" ; systematic_id "SPBC887.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3543588 3543669 . - . mRNA SPBC887.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.03c" ; systematic_id "SPBC887.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3543670 3545958 . - . mRNA SPBC887.03c ; systematic_id "SPBC887.03c" ; colour "7" ; gene "noc3 ||| SPBC887.03c" ; Alias "noc3" ; db_xref "SPD:28/28C04" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0030691; Noc2p-Noc3p complex
GO:0006364; rRNA processing
GO:0006270; DNA replication initiation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "noc3" ; product "Noc2p-Noc3p complex subunit Noc3 (predicted)" ;
chromosome2 GeneDB CDS 3543670 3545802 . - . mRNA SPBC887.03c ; colour "7" ;
chromosome2 GeneDB CDS 3545848 3545958 . - . mRNA SPBC887.03c ; colour "7" ;
chromosome2 GeneDB misc_feature 3545803 3545813 . - . misc_feature unknown_3057 ; colour "6" ; note "cttacatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3545842 3545847 . - . misc_feature unknown_3058 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 3546172 3546237 . - . mRNA SPBC887.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.04c" ; systematic_id "SPBC887.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3546238 3548505 . - . mRNA SPBC887.04c ; systematic_id "SPBC887.04c" ; colour "2" ; gene "lub1 ||| SPBC887.04c" ; Alias "lub1" ; db_xref "SPD:28/28B06" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005515; protein binding
GO:0043130; ubiquitin binding
GO:0006281; DNA repair
GO:0033554; cellular response to stress
GO:0016574; histone ubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL213C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lub1" ; product "WD repeat protein Lub1" ;
chromosome2 GeneDB CDS 3546238 3548159 . - . mRNA SPBC887.04c ; colour "2" ;
chromosome2 GeneDB CDS 3548220 3548391 . - . mRNA SPBC887.04c ; colour "2" ;
chromosome2 GeneDB CDS 3548458 3548505 . - . mRNA SPBC887.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 3548160 3548183 . - . misc_feature unknown_3059 ; colour "6" ; note "ttgacaaaggttacatattttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3548214 3548219 . - . misc_feature unknown_3060 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3548392 3548409 . - . misc_feature unknown_3061 ; colour "6" ; note "ataacaaatatatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3548452 3548457 . - . misc_feature unknown_3062 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3548504 3548539 . - . mRNA SPBC887.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.04c" ; systematic_id "SPBC887.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3548811 3549137 . - . mRNA SPBC887.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.05c" ; systematic_id "SPBC887.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3549138 3549881 . - . mRNA SPBC887.05c ; systematic_id "SPBC887.05c" ; colour "2" ; gene "cwf29 ||| SPBC887.05c" ; Alias "cwf29" ; db_xref "SPD:43/43A12" ; GO "GO:0005686; snRNP U2
GO:0000245; spliceosome assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YIR005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cwf29" ; product "RNA-binding protein Cwf29" ;
chromosome2 GeneDB CDS 3549138 3549786 . - . mRNA SPBC887.05c ; colour "2" ;
chromosome2 GeneDB CDS 3549877 3549881 . - . mRNA SPBC887.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 3549787 3549799 . - . misc_feature unknown_3063 ; colour "6" ; note "ttaacaaaagtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3549871 3549876 . - . misc_feature unknown_3064 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3549880 3549913 . - . mRNA SPBC887.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.05c" ; systematic_id "SPBC887.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3550020 3550635 . - . mRNA SPBC887.06c ; systematic_id "SPBC887.06c" ; colour "7" ; gene "snx3 ||| grd19 ||| SPBC887.06c" ; Alias "snx3" ; db_xref "SPD:06/06H08" ; synonym "grd19" ; GO "GO:0035091; phosphoinositide binding
GO:0005768; endosome
GO:0034499; late endosome to Golgi transport
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR357C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snx3" ; product "sorting nexin Snx3 (predicted)" ;
chromosome2 GeneDB CDS 3550020 3550104 . - . mRNA SPBC887.06c ; colour "7" ;
chromosome2 GeneDB CDS 3550185 3550381 . - . mRNA SPBC887.06c ; colour "7" ;
chromosome2 GeneDB CDS 3550437 3550502 . - . mRNA SPBC887.06c ; colour "7" ;
chromosome2 GeneDB CDS 3550552 3550635 . - . mRNA SPBC887.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 3550105 3550123 . - . misc_feature unknown_3065 ; colour "6" ; note "ctaatacattattatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3550179 3550184 . - . misc_feature unknown_3066 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3550382 3550398 . - . misc_feature unknown_3067 ; colour "6" ; note "ttaactcatttttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3550431 3550436 . - . misc_feature unknown_3068 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3550503 3550521 . - . misc_feature unknown_3069 ; colour "6" ; note "ctaatagatgttattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3550546 3550551 . - . misc_feature unknown_3070 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3550634 3550736 . - . mRNA SPBC887.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.06c" ; systematic_id "SPBC887.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3551340 3551347 . + . mRNA SPBC887.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.07" ; systematic_id "SPBC887.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3551348 3551834 . + . mRNA SPBC887.07 ; systematic_id "SPBC887.07" ; colour "7" ; gene "SPBC887.07 ||| mrpl38" ; Alias "mrpl38" ; db_xref "SPD:04/04E11" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL170W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl38" ; product "mitochondrial ribosomal protein subunit L38 (predicted)" ;
chromosome2 GeneDB CDS 3551348 3551389 . + . mRNA SPBC887.07 ; colour "7" ;
chromosome2 GeneDB CDS 3551433 3551490 . + . mRNA SPBC887.07 ; colour "7" ;
chromosome2 GeneDB CDS 3551554 3551834 . + . mRNA SPBC887.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 3551390 3551395 . + . misc_feature unknown_3071 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3551416 3551432 . + . misc_feature unknown_3072 ; colour "6" ; note "ctaataagatggaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3551491 3551496 . + . misc_feature unknown_3073 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3551527 3551553 . + . misc_feature unknown_3074 ; colour "6" ; note "ctaacatcacctttttttaaaaaacag, splice branch and accep tor" ;
chromosome2 GeneDB 3'-UTR 3551835 3551891 . + . mRNA SPBC887.07 ; ID "SPBC887.07" ; systematic_id "SPBC887.07" ; note "mRNA from AU014142" ;
chromosome2 GeneDB 5'-UTR 3552055 3552117 . + . mRNA SPBC887.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.08" ; systematic_id "SPBC887.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3552118 3552550 . + . mRNA SPBC887.08 ; db_xref "SPD:03/03F05" ; systematic_id "SPBC887.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC887.08" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3552118 3552243 . + . mRNA SPBC887.08 ; colour "8" ;
chromosome2 GeneDB CDS 3552302 3552550 . + . mRNA SPBC887.08 ; colour "8" ;
chromosome2 GeneDB misc_feature 3552244 3552249 . + . misc_feature unknown_3075 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3552286 3552301 . + . misc_feature unknown_3076 ; colour "6" ; note "ttaacagattattcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3552551 3552660 . + . mRNA SPBC887.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.08" ; systematic_id "SPBC887.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3552775 3552821 . - . mRNA SPBC887.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.09c" ; systematic_id "SPBC887.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3552822 3555482 . - . mRNA SPBC887.09c ; db_xref "SPD:38/38H02" ; systematic_id "SPBC887.09c" ; colour "7" ; GO "GO:0000920; cell separation during cytokinesis
GO:0007165; signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR353C; date=19700101 ||| term=human LRR57 ortholog; qualifier=predicted; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC887.09c" ; product "leucine-rich repeat protein Sog2 (predicted)" ;
chromosome2 GeneDB CDS 3552822 3555482 . - . mRNA SPBC887.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3555481 3555633 . - . mRNA SPBC887.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.09c" ; systematic_id "SPBC887.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3555918 3556114 . + . misc_RNA SPNCRNA.423 ; db_xref "PMID:18488015" ; synonym "SPNG1839" ; systematic_id "SPNCRNA.423" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 3557115 3557273 . + . mRNA SPBC887.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.10" ; systematic_id "SPBC887.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3557274 3558842 . + . mRNA SPBC887.10 ; systematic_id "SPBC887.10" ; colour "2" ; gene "mcs4 ||| SPBC887.10" ; Alias "mcs4" ; db_xref "SPD:33/33B11" ; GO "GO:0031098; stress-activated protein kinase signaling pathway
GO:0034599; cellular response to oxidative stress
GO:0007346; regulation of progression through mitotic cell cycle
GO:0070301; cellular response to hydrogen peroxide
GO:0046685; cellular response to arsenic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; allele=mcs4-13; qualifier=in_minimal_media; db_xref=PMID:2474475; date=20100709 ||| term=orthologous to S. cerevisiae YLR006C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, Mitotic Catastrophe Suppressor; cv=name_description; date=19700101" ; primary_name "mcs4" ; product "response regulator Mcs4" ;
chromosome2 GeneDB CDS 3557274 3558842 . + . mRNA SPBC887.10 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3558843 3559095 . + . mRNA SPBC887.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.10" ; systematic_id "SPBC887.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3559396 3560788 . + . mRNA SPBC887.11 ; systematic_id "SPBC887.11" ; colour "7" ; gene "pus2 ||| SPBC887.11" ; Alias "pus2" ; db_xref "SPD:44/44E01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL212C and YGL063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031119; tRNA pseudouridine synthesis
GO:0005634; nucleus
GO:0009982; pseudouridine synthase activity" ; primary_name "pus2" ; product "tRNA pseudouridine synthase Pus2 (predicted)" ; EC_number "4.2.1.70" ;
chromosome2 GeneDB CDS 3559396 3560684 . + . mRNA SPBC887.11 ; colour "7" ;
chromosome2 GeneDB CDS 3560722 3560788 . + . mRNA SPBC887.11 ; colour "7" ;
chromosome2 GeneDB misc_feature 3560685 3560690 . + . misc_feature unknown_3077 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3560710 3560721 . + . misc_feature unknown_3078 ; colour "6" ; note "ttaacatgctag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 3561739 3561886 . + . mRNA SPBC887.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.12" ; systematic_id "SPBC887.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3561887 3565663 . + . mRNA SPBC887.12 ; db_xref "SPD:48/48E11" ; systematic_id "SPBC887.12" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061010 ||| term=disease associated, cholestasis; date=20061010 ||| term=orthologous to S. cerevisiae YAL026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005802; trans-Golgi network
GO:0005524; ATP binding
; phospholipid-translocating ATPase activity
GO:0045332; phospholipid translocation
GO:0006892; post-Golgi vesicle-mediated transport
GO:0000028; ribosome small subunit assembly" ; gene "SPBC887.12" ; product "P-type ATPase (predicted)" ; EC_number "3.6.3.1" ;
chromosome2 GeneDB CDS 3561887 3565663 . + . mRNA SPBC887.12 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3565664 3565753 . + . mRNA SPBC887.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.12" ; systematic_id "SPBC887.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3565808 3565823 . - . mRNA SPBC887.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.13c" ; systematic_id "SPBC887.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3565824 3567187 . - . mRNA SPBC887.13c ; db_xref "SPD:44/44C12" ; systematic_id "SPBC887.13c" ; colour "7" ; GO "GO:0004315; 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0005739; mitochondrion
GO:0006633; fatty acid biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC887.13c" ; product "3-oxoacyl-[acyl-carrier-protein]-synthase condensing enzyme (predicted)" ;
chromosome2 GeneDB CDS 3565824 3565994 . - . mRNA SPBC887.13c ; colour "7" ;
chromosome2 GeneDB CDS 3566041 3566829 . - . mRNA SPBC887.13c ; colour "7" ;
chromosome2 GeneDB CDS 3566867 3567187 . - . mRNA SPBC887.13c ; colour "7" ;
chromosome2 GeneDB misc_feature 3565995 3566011 . - . misc_feature unknown_3079 ; colour "6" ; note "ctaacaaaactgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3566035 3566040 . - . misc_feature unknown_3080 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3566830 3566841 . - . misc_feature unknown_3081 ; colour "6" ; note "ctaacaaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3566861 3566866 . - . misc_feature unknown_3082 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3567186 3567455 . - . mRNA SPBC887.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.13c" ; systematic_id "SPBC887.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3567679 3567729 . - . mRNA SPBC887.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.14c" ; systematic_id "SPBC887.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3567730 3570188 . - . mRNA SPBC887.14c ; systematic_id "SPBC887.14c" ; colour "2" ; gene "pfh1 ||| pif1 ||| SPBC887.14c" ; Alias "pfh1" ; db_xref "SPD:33/33H02" ; synonym "pif1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12058079|PMID:18725402; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12058079; date=20100708 ||| term=gene expression, alternative transcripts, alternative initiation site; db_xref=PMID:18725402; cv=gene_ex; date=20080901 ||| term=complementation, functionally complemented by S. cerevisiae RRM3; cv=complementation; date=20080901 ||| term=localization, DNA damage foci; db_xref=PMID:18725402; date=20080901 ||| term=orthologous to S. cerevisiae YHR031C and YML061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, PiF1 Helicase homolog; date=20100629 ||| term=human PIF1 ortholog; date=20100708" ; GO "GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0043141; ATP-dependent 5' to 3' DNA helicase activity
GO:0006310; DNA recombination
GO:0006281; DNA repair
GO:0033567; DNA replication, Okazaki fragment processing
GO:0043137; DNA replication, removal of RNA primer
GO:0043504; mitochondrial DNA repair
GO:0000723; telomere maintenance
GO:0005730; nucleolus
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; primary_name "pfh1" ; product "5' to 3' DNA helicase, involved in DNA recombination and repair Pif1" ;
chromosome2 GeneDB CDS 3567730 3568892 . - . mRNA SPBC887.14c ; colour "2" ;
chromosome2 GeneDB CDS 3568934 3570188 . - . mRNA SPBC887.14c ; colour "2" ;
chromosome2 GeneDB misc_feature 3568893 3568905 . - . misc_feature unknown_3083 ; colour "6" ; note "ctaataactatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3568928 3568933 . - . misc_feature unknown_3084 ; colour "6" ; note "gtaaac, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3570187 3570482 . - . mRNA SPBC887.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.14c" ; systematic_id "SPBC887.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3571306 3571379 . - . mRNA SPBC887.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.15c" ; systematic_id "SPBC887.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3571380 3572261 . - . mRNA SPBC887.15c ; systematic_id "SPBC887.15c" ; colour "2" ; gene "SPBC887.15c" ; Alias "sur2" ; db_xref "SPD:11/11H12" ; GO "GO:0000170; sphingosine hydroxylase activity
GO:0005789; endoplasmic reticulum membrane
GO:0005506; iron ion binding
GO:0006675; mannose inositol phosphoceramide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR297W; date=19700101" ; primary_name "sur2" ; product "sphingosine hydroxylase Sur2" ;
chromosome2 GeneDB CDS 3571380 3572261 . - . mRNA SPBC887.15c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3572260 3573067 . - . mRNA SPBC887.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.15c" ; systematic_id "SPBC887.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3574921 3575250 . + . mRNA SPBC887.16 ; db_xref "SPD:01/01H04" ; systematic_id "SPBC887.16" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPBC887.16" ; product "dubious" ;
chromosome2 GeneDB CDS 3574921 3575250 . + . mRNA SPBC887.16 ; colour "6" ;
chromosome2 GeneDB 5'-UTR 3575489 3576031 . + . mRNA SPBC887.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.17" ; systematic_id "SPBC887.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3576032 3577909 . + . mRNA SPBC887.17 ; db_xref "SPD:26/26D04" ; systematic_id "SPBC887.17" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBC887.17" ; product "transmembrane transporter (predicted)" ;
chromosome2 GeneDB CDS 3576032 3577909 . + . mRNA SPBC887.17 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3577910 3578020 . + . mRNA SPBC887.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.17" ; systematic_id "SPBC887.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3578128 3578224 . - . mRNA SPBC887.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.18c" ; systematic_id "SPBC887.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3578225 3579455 . - . mRNA SPBC887.18c ; systematic_id "SPBC887.18c" ; colour "2" ; gene "SPBC887.18c ||| hfi1" ; Alias "hfi1" ; db_xref "SPD:22/22C02" ; GO "GO:0003712; transcription cofactor activity
GO:0016573; histone acetylation
GO:0006366; transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL254W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Eukaryotes only; date=20100212 ||| term=species distribution, conserved in Vertebrates; date=20100212 ||| term=species distribution, conserved in Metazoa; date=20100212 ||| term=human TADA1L ortholog; date=20100212" ; primary_name "hfi1" ; product "SAGA complex subunit Hfi1" ;
chromosome2 GeneDB CDS 3578225 3578700 . - . mRNA SPBC887.18c ; colour "2" ;
chromosome2 GeneDB CDS 3578819 3578918 . - . mRNA SPBC887.18c ; colour "2" ;
chromosome2 GeneDB CDS 3578970 3579196 . - . mRNA SPBC887.18c ; colour "2" ;
chromosome2 GeneDB CDS 3579239 3579455 . - . mRNA SPBC887.18c ; colour "2" ;
chromosome2 GeneDB misc_feature 3578701 3578713 . - . misc_feature unknown_3085 ; colour "6" ; note "ctaacctcattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3578813 3578818 . - . misc_feature unknown_3086 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3578919 3578935 . - . misc_feature unknown_3087 ; colour "6" ; note "ctaacaaacatatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3578964 3578969 . - . misc_feature unknown_3088 ; colour "6" ; note "gtaggc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3579197 3579208 . - . misc_feature unknown_3089 ; colour "6" ; note "ctgacactttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3579233 3579238 . - . misc_feature unknown_3090 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3579454 3579613 . - . mRNA SPBC887.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.18c" ; systematic_id "SPBC887.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3580218 3580334 . + . mRNA SPBC887.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.19" ; systematic_id "SPBC887.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3580335 3581918 . + . mRNA SPBC887.19 ; systematic_id "SPBC887.19" ; colour "7" ; gene "rft1 ||| SPBC887.19" ; Alias "rft1" ; db_xref "SPD:45/45C04" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006487; protein amino acid N-linked glycosylation
GO:0034202; glycolipid-translocating activity
GO:0034203; glycolipid translocation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBL020W; date=19700101 ||| term=human RFT1 ortholog; date=20071118 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rft1" ; product "Man5GlcNac2-PP-Dol translocation protein Rft1 (predicted)" ;
chromosome2 GeneDB CDS 3580335 3581918 . + . mRNA SPBC887.19 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3581919 3583626 . + . mRNA SPBC887.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC887.19" ; systematic_id "SPBC887.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3582033 3582094 . - . mRNA SPBC418.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC418.01c" ; systematic_id "SPBC418.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3582095 3583826 . - . mRNA SPBC418.01c ; systematic_id "SPBC418.01c" ; colour "7" ; gene "his4 ||| SPBC887.20c ||| SPBC418.01c" ; Alias "his4" ; db_xref "SPD:45/45F09" ; synonym "SPBC887.20c" ; GO "GO:0000105; histidine biosynthesis
GO:0000107; imidazoleglycerol-phosphate synthase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, bifunctional enzyme; cv=cat_act; date=19700101 ||| term=orthologous to S. cerevisiae YBR248C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "his4" ; product "imidazoleglycerol-phosphate synthase (predicted)" ; EC_number "2.4.2.-" ;
chromosome2 GeneDB CDS 3582095 3583600 . - . mRNA SPBC418.01c ; colour "7" ;
chromosome2 GeneDB CDS 3583707 3583826 . - . mRNA SPBC418.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 3583547 3583740 . + . misc_feature unknown_3091 ; note "nominal overlap with cosmid SPBC418 and cosmid SPBC887" ;
chromosome2 GeneDB misc_feature 3583601 3583617 . - . misc_feature unknown_3092 ; colour "6" ; note "ctaatctatactttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3583701 3583706 . - . misc_feature unknown_3093 ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_RNA 3584415 3584941 . + . misc_RNA SPNCRNA.424 ; db_xref "PMID:18488015" ; synonym "SPNG1847" ; systematic_id "SPNCRNA.424" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 3584891 3585258 . + . mRNA SPBC418.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC418.02" ; systematic_id "SPBC418.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3585259 3587346 . + . mRNA SPBC418.02 ; db_xref "SPD:27/27G10" ; systematic_id "SPBC418.02" ; colour "7" ; GO "GO:0004596; peptide alpha-N-acetyltransferase activity
GO:0006473; protein amino acid acetylation
GO:0005737; cytoplasm
GO:0031415; NatA complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC418.02" ; product "NatA N-acetyltransferase complex subunit (predicted)" ;
chromosome2 GeneDB CDS 3585259 3587346 . + . mRNA SPBC418.02 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3587313 3587477 . - . mRNA SPBC16D10.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.01c" ; systematic_id "SPBC16D10.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3587478 3588488 . - . mRNA SPBC16D10.01c ; systematic_id "SPBC16D10.01c" ; colour "10" ; gene "SPBC418.03c ||| SPBC16D10.01c" ; note "transcriptional coregulation predicts a role in ribosome biogenesis for S. cerevisiae ortholog, which is supported by nueceolar localization, however S. cerevisie interaction data indicates a connection to glycolysis" ; Alias "SPBC418.03c" ; db_xref "SPD:15/15A06" ; synonym "SPBC418.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR161W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPBC418.03c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 3587478 3588488 . - . mRNA SPBC16D10.01c ; colour "10" ;
chromosome2 GeneDB misc_feature 3587777 3588005 . + . misc_feature unknown_3094 ; note "nominal overlap with cosmid SPBC418 and cosmid SPBC16D10" ;
chromosome2 GeneDB 5'-UTR 3588487 3588633 . - . mRNA SPBC16D10.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.01c" ; systematic_id "SPBC16D10.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3588806 3590386 . + . mRNA SPBC16D10.02 ; systematic_id "SPBC16D10.02" ; colour "7" ; gene "trm11 ||| SPBC16D10.02" ; Alias "trm11" ; db_xref "SPD:23/23H07" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0043528; tRNA (m2G10) methyltransferase complex
GO:0030488; tRNA methylation
GO:0004809; tRNA (guanine-N2-)-methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trm11" ; product "tRNA (guanine-N2-)-methyltransferase catalytic subunit Trm11 (predicted)" ;
chromosome2 GeneDB CDS 3588806 3589595 . + . mRNA SPBC16D10.02 ; colour "7" ;
chromosome2 GeneDB CDS 3589639 3589803 . + . mRNA SPBC16D10.02 ; colour "7" ;
chromosome2 GeneDB CDS 3589845 3590123 . + . mRNA SPBC16D10.02 ; colour "7" ;
chromosome2 GeneDB CDS 3590163 3590278 . + . mRNA SPBC16D10.02 ; colour "7" ;
chromosome2 GeneDB CDS 3590327 3590386 . + . mRNA SPBC16D10.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 3589596 3589601 . + . misc_feature unknown_3095 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3589622 3589638 . + . misc_feature unknown_3096 ; colour "6" ; note "ctaacattgttttgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3589804 3589809 . + . misc_feature unknown_3097 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3589831 3589844 . + . misc_feature unknown_3098 ; colour "6" ; note "ttaacatttgatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3590124 3590129 . + . misc_feature unknown_3099 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3590151 3590162 . + . misc_feature unknown_3100 ; colour "6" ; note "ttaacctattag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 3590998 3591165 . + . mRNA SPBC16D10.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.03" ; systematic_id "SPBC16D10.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3591166 3592246 . + . mRNA SPBC16D10.03 ; systematic_id "SPBC16D10.03" ; colour "2" ; gene "pgp2 ||| SPBC16D10.03" ; Alias "pgp2" ; db_xref "SPD:16/16G12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Pombe GlycoProtease; db_xref=PMID:11115118; date=20101215" ; GO "GO:0008270; zinc ion binding
GO:0006508; proteolysis
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000723; telomere maintenance
GO:0031490; chromatin DNA binding
GO:0004222; metalloendopeptidase activity
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0000408; EKC/KEOPS protein complex
; nuclear chromatin" ; primary_name "pgp2" ; product "metallopeptidase Pgp2" ; EC_number "3.4.24.57" ;
chromosome2 GeneDB CDS 3591166 3591746 . + . mRNA SPBC16D10.03 ; colour "2" ;
chromosome2 GeneDB CDS 3591787 3592246 . + . mRNA SPBC16D10.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 3591747 3591752 . + . misc_feature unknown_3101 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3591772 3591786 . + . misc_feature unknown_3102 ; colour "6" ; note "ctaattttttcctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3592247 3592318 . + . mRNA SPBC16D10.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.03" ; systematic_id "SPBC16D10.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3592319 3592358 . - . mRNA SPBC16D10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.04c" ; systematic_id "SPBC16D10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3592359 3596692 . - . mRNA SPBC16D10.04c ; systematic_id "SPBC16D10.04c" ; colour "2" ; gene "dna2 ||| SPBC16D10.04c" ; Alias "dna2" ; db_xref "SPD:34/34B04" ; GO "GO:0000784; nuclear chromosome, telomeric region
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0017108; 5'-flap endonuclease activity
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0004527; exonuclease activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042162; telomeric DNA binding
GO:0006281; DNA repair
GO:0043137; DNA replication, removal of RNA primer
GO:0000084; S phase of mitotic cell cycle
GO:0000723; telomere maintenance
GO:0031860; telomeric 3' overhang formation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10880469; date=19700101 ||| term=orthologous to S. cerevisiae YHR164C; date=19700101 ||| term=misc, disruption of interaction between Cdc27 and Pcn1 makes Cdc24-Dna2 complex dispensible; db_xref=PMID:15576681; date=20070725 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10880469; date=20100708 ||| term=phenotype, mononucleate; qualifier=deletion; db_xref=PMID:10880469; date=20100708" ; primary_name "dna2" ; product "DNA replication endonuclease-helicase Dna2" ;
chromosome2 GeneDB CDS 3592359 3592685 . - . mRNA SPBC16D10.04c ; colour "2" ;
chromosome2 GeneDB CDS 3592733 3593447 . - . mRNA SPBC16D10.04c ; colour "2" ;
chromosome2 GeneDB CDS 3593496 3596292 . - . mRNA SPBC16D10.04c ; colour "2" ;
chromosome2 GeneDB CDS 3596335 3596692 . - . mRNA SPBC16D10.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 3592686 3592701 . - . misc_feature unknown_3103 ; colour "6" ; note "ctaaccatttatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3592727 3592732 . - . misc_feature unknown_3104 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3593448 3593460 . - . misc_feature unknown_3105 ; colour "6" ; note "ctaacaacattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3593490 3593495 . - . misc_feature unknown_3106 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3596293 3596303 . - . misc_feature unknown_3107 ; colour "6" ; note "ttaacttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3596329 3596334 . - . misc_feature unknown_3108 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3596691 3596935 . - . mRNA SPBC16D10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.04c" ; systematic_id "SPBC16D10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3597571 3604687 . + . mRNA SPBC16D10.05 ; systematic_id "SPBC16D10.05" ; colour "2" ; gene "mok13 ||| SPBC16D10.05" ; Alias "mok13" ; db_xref "SPD:34/34B09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20070309 ||| term=similar to S. pombe MOK1 and MOK11 and MOK14 and MOK12; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:16420355; date=20080430 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005619; fungal-type spore wall
GO:0005628; prospore membrane
GO:0047657; alpha-1,3-glucan synthase activity
GO:0004556; alpha-amylase activity
GO:0034411; alpha-1,3-glucan biosynthetic process
GO:0030476; ascospore wall assembly
GO:0033554; cellular response to stress
GO:0030476; ascospore wall assembly" ; primary_name "mok13" ; product "alpha-1,3-glucan synthase Mok13" ; EC_number "2.4.1.183" ;
chromosome2 GeneDB CDS 3597571 3597927 . + . mRNA SPBC16D10.05 ; colour "2" ;
chromosome2 GeneDB CDS 3597968 3604687 . + . mRNA SPBC16D10.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 3597928 3597933 . + . misc_feature unknown_3109 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3597956 3597967 . + . misc_feature unknown_3110 ; colour "6" ; note "ttaacgaataag, splice branch and acceptor" ;
chromosome2 GeneDB misc_RNA 3605142 3606517 . + . misc_RNA SPNCRNA.425 ; db_xref "PMID:18488015" ; synonym "SPNG1851" ; systematic_id "SPNCRNA.425" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 3607199 3607889 . + . mRNA SPBC16D10.06 ; ID "SPBC16D10.06" ; obsolete_name "SPNCRNA.135" ; db_xref "EMBL:AU012572" ; systematic_id "SPBC16D10.06" ; note "previously annotated as a non-coding RNA SPNCRNA.135, but subsequently determined to be the 5' UTR of SPBC16D10.06 (pers. comm S. Whitehall)" ;
chromosome2 GeneDB CDS_parts 3607890 3609116 . + . mRNA SPBC16D10.06 ; systematic_id "SPBC16D10.06" ; colour "2" ; gene "SPBC16D10.06" ; Alias "zrt1" ; db_xref "SPD:19/19E07" ; GO "GO:0071276; cellular response to cadmium ion
GO:0034224; cellular response to zinc ion starvation
GO:0055069; zinc ion homeostasis
GO:0034224; cellular response to zinc ion starvation
GO:0033217; regulation of transcription from RNA polymerase II promoter in response to iron ion starvation
GO:0005385; high affinity zinc uptake transmembrane transporter activity
GO:0006830; high-affinity zinc ion transport
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL255W and YLR130C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18203864; date=20090110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "zrt1" ; product "ZIP zinc transporter Zrt1" ;
chromosome2 GeneDB CDS 3607890 3609116 . + . mRNA SPBC16D10.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3609117 3609255 . + . mRNA SPBC16D10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.06" ; systematic_id "SPBC16D10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3609588 3609645 . - . mRNA SPBC16D10.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.07c" ; systematic_id "SPBC16D10.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3609646 3611556 . - . mRNA SPBC16D10.07c ; systematic_id "SPBC16D10.07c" ; colour "2" ; gene "sir2 ||| SPBC16D10.07c" ; Alias "sir2" ; db_xref "SPD:26/26D07" ; GO "GO:0016585; chromatin remodeling complex
GO:0000775; chromosome, pericentric region
GO:0000781; chromosome, telomeric region
GO:0031934; mating-type region heterochromatin
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0070403; NAD binding
GO:0046969; NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970; NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0032129; histone deacetylase activity (H3-K9 specific)
GO:0030528; transcription regulator activity
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0000070; mitotic sister chromatid segregation
GO:0016575; histone deacetylation
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0070198; protein localization to chromosome, telomeric region
GO:0051570; regulation of histone H3-K9 methylation
GO:0060303; regulation of nucleosome density
GO:0006357; regulation of transcription from polymerase II promoter
GO:0001302; replicative cell aging" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15545655; date=19700101 ||| term=orthologous to S. cerevisiae YDL042C and YOL068C; date=19700101 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16079916; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:15545655; date=20091211 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sir2" ; product "Sir2 family histone deacetylase Sir2" ;
chromosome2 GeneDB CDS 3609646 3610274 . - . mRNA SPBC16D10.07c ; colour "2" ;
chromosome2 GeneDB CDS 3610339 3610775 . - . mRNA SPBC16D10.07c ; colour "2" ;
chromosome2 GeneDB CDS 3610861 3610892 . - . mRNA SPBC16D10.07c ; colour "2" ;
chromosome2 GeneDB CDS 3611023 3611105 . - . mRNA SPBC16D10.07c ; colour "2" ;
chromosome2 GeneDB CDS 3611147 3611209 . - . mRNA SPBC16D10.07c ; colour "2" ;
chromosome2 GeneDB CDS 3611373 3611556 . - . mRNA SPBC16D10.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 3610275 3610291 . - . misc_feature unknown_3111 ; colour "6" ; note "ctaatttgattatatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3610275 3610338 . - . intron SPBC16D10.07c ; systematic_id "SPBC16D10.07c" ; note "confirmed, pers comm T. Laurenson 18-6-04" ;
chromosome2 GeneDB misc_feature 3610333 3610338 . - . misc_feature unknown_3112 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3610776 3610791 . - . misc_feature unknown_3113 ; colour "6" ; note "ctaacgtgctaattag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3610776 3610860 . - . intron SPBC16D10.07c ; systematic_id "SPBC16D10.07c" ; note "confirmed, pers comm T. Laurenson 18-6-04" ;
chromosome2 GeneDB misc_feature 3610855 3610860 . - . misc_feature unknown_3114 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3610893 3610905 . - . misc_feature unknown_3115 ; note "ttaacgtaaatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3610893 3611022 . - . intron SPBC16D10.07c ; systematic_id "SPBC16D10.07c" ; note "confirmed, pers comm T. Laurenson 18-6-04" ;
chromosome2 GeneDB misc_feature 3611017 3611022 . - . misc_feature unknown_3116 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3611106 3611122 . - . misc_feature unknown_3117 ; colour "6" ; note "ttaactagtatttgtag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3611106 3611146 . - . intron SPBC16D10.07c ; systematic_id "SPBC16D10.07c" ; note "confirmed, pers comm T. Laurenson 18-6-04" ;
chromosome2 GeneDB misc_feature 3611141 3611146 . - . misc_feature unknown_3118 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3611210 3611224 . - . misc_feature unknown_3119 ; colour "6" ; note "ttaattatttaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3611210 3611372 . - . intron SPBC16D10.07c ; systematic_id "SPBC16D10.07c" ; note "confirmed, pers comm T. Laurenson 18-6-04" ;
chromosome2 GeneDB misc_feature 3611367 3611372 . - . misc_feature unknown_3120 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3611555 3611624 . - . mRNA SPBC16D10.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.07c" ; systematic_id "SPBC16D10.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3612339 3612358 . - . mRNA SPBC16D10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.08c" ; systematic_id "SPBC16D10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3612359 3615076 . - . mRNA SPBC16D10.08c ; db_xref "SPD:47/47B05" ; systematic_id "SPBC16D10.08c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0051085; chaperone cofactor-dependent protein folding
GO:0033554; cellular response to stress
GO:0051087; chaperone binding
GO:0042623; ATPase activity, coupled
GO:0031072; heat shock protein binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YLL026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC16D10.08c" ; product "heat shock protein Hsp104 (predicted)" ;
chromosome2 GeneDB CDS 3612359 3615076 . - . mRNA SPBC16D10.08c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3615075 3615254 . - . mRNA SPBC16D10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.08c" ; systematic_id "SPBC16D10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3616628 3616684 . + . mRNA SPBC16D10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.09" ; systematic_id "SPBC16D10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3616685 3617578 . + . mRNA SPBC16D10.09 ; systematic_id "SPBC16D10.09" ; colour "2" ; gene "pcn1 ||| pcn ||| SPBC16D10.09" ; Alias "pcn1" ; db_xref "SPD:32/32A11" ; synonym "pcn" ; GO "GO:0043626; PCNA complex
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0030337; DNA polymerase processivity factor activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000077; DNA damage checkpoint
GO:0006271; DNA strand elongation
GO:0006301; postreplication repair
GO:0006301; postreplication repair
GO:0006301; postreplication repair
GO:0007346; regulation of mitotic cell cycle
GO:0034644; cellular response to UV
GO:0010212; response to ionizing radiation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:8663159; date=20100705 ||| term=orthologous to S. cerevisiae YBR088C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, ubiquitinated; qualifier=during_S_phase|during_DNA_damage;evidence=IDA; residue=K164; cv=pt_mod; db_xref=PMID:16641370; date=20060508 ||| term=modification, ubiquitinated; qualifier=during_G2_phase|during_DNA_damage; evidence=IDA; residue=K164; cv=pt_mod; db_xref=PMID:16641370; date=20060508" ; primary_name "pcn1" ; product "PCNA" ;
chromosome2 GeneDB CDS 3616685 3616765 . + . mRNA SPBC16D10.09 ; colour "2" ;
chromosome2 GeneDB CDS 3616877 3617578 . + . mRNA SPBC16D10.09 ; colour "2" ;
chromosome2 GeneDB misc_feature 3616766 3616771 . + . misc_feature unknown_3121 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3616862 3616876 . + . misc_feature unknown_3122 ; colour "6" ; note "ctaacctcataacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3617579 3617730 . + . mRNA SPBC16D10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.09" ; systematic_id "SPBC16D10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3618117 3619540 . + . mRNA SPBC16D10.10 ; db_xref "SPD:23/23B06" ; systematic_id "SPBC16D10.10" ; colour "7" ; GO "GO:0006400; tRNA modification
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008251; tRNA specific adenosine deaminase activity
GO:0046982; protein heterodimerization activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC16D10.10" ; product "tRNA specific adenosine deaminase subunit Tad2 (predicted)" ;
chromosome2 GeneDB CDS 3618117 3618179 . + . mRNA SPBC16D10.10 ; colour "7" ;
chromosome2 GeneDB CDS 3618228 3618617 . + . mRNA SPBC16D10.10 ; colour "7" ;
chromosome2 GeneDB CDS 3618658 3618702 . + . mRNA SPBC16D10.10 ; colour "7" ;
chromosome2 GeneDB CDS 3618747 3618918 . + . mRNA SPBC16D10.10 ; colour "7" ;
chromosome2 GeneDB CDS 3618956 3619071 . + . mRNA SPBC16D10.10 ; colour "7" ;
chromosome2 GeneDB CDS 3619113 3619321 . + . mRNA SPBC16D10.10 ; colour "7" ;
chromosome2 GeneDB CDS 3619366 3619540 . + . mRNA SPBC16D10.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 3618180 3618185 . + . misc_feature unknown_3123 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3618210 3618227 . + . misc_feature unknown_3124 ; colour "6" ; note "ctaatactttaatactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3618618 3618623 . + . misc_feature unknown_3125 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3618644 3618657 . + . misc_feature unknown_3126 ; colour "6" ; note "ctaatttcttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3618703 3618708 . + . misc_feature unknown_3127 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3618733 3618746 . + . misc_feature unknown_3128 ; colour "6" ; note "ctaattattggaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3618921 3618926 . + . misc_feature unknown_3129 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3619055 3619076 . + . misc_feature unknown_3130 ; colour "6" ; note "ctaactgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3619322 3619327 . + . misc_feature unknown_3131 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3619349 3619365 . + . misc_feature unknown_3132 ; colour "6" ; note "cttacgatttatgacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3619817 3619837 . - . mRNA SPBC16D10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.11c" ; systematic_id "SPBC16D10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3619838 3620448 . - . mRNA SPBC16D10.11c ; systematic_id "SPBC16D10.11c" ; colour "7" ; gene "rps1801 ||| rps18-1 ||| SPBC16D10.11c" ; Alias "rps1801" ; db_xref "SPD:31/31F09" ; synonym "rps18-1" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR450W and YML026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps1801" ; product "40S ribosomal protein S18 (predicted)" ;
chromosome2 GeneDB CDS 3619838 3620272 . - . mRNA SPBC16D10.11c ; colour "7" ;
chromosome2 GeneDB CDS 3620425 3620448 . - . mRNA SPBC16D10.11c ; colour "7" ;
chromosome2 GeneDB misc_feature 3620273 3620284 . - . misc_feature unknown_3133 ; colour "6" ; note "ttaacattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3620419 3620424 . - . misc_feature unknown_3134 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3620447 3620477 . - . mRNA SPBC16D10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16D10.11c" ; systematic_id "SPBC16D10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3620593 3622000 . + . misc_RNA SPNCRNA.426 ; db_xref "PMID:18488015" ; synonym "SPNG1854" ; systematic_id "SPNCRNA.426" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "This transcript seems to be specific to heatshock" ;
chromosome2 GeneDB 5'-UTR 3625865 3626638 . + . mRNA SPBC317.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC317.01" ; systematic_id "SPBC317.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3626235 3626420 . + . misc_feature unknown_3135 ; note "nominal overlap with SPBC16D10 S. pombe chromosome 2" ;
chromosome2 GeneDB CDS_parts 3626639 3627757 . + . mRNA SPBC317.01 ; systematic_id "SPBC317.01" ; colour "2" ; gene "mbx2 ||| pvg4 ||| SPBC317.01" ; Alias "mbx2" ; db_xref "SPD:17/17F05" ; synonym "pvg4" ; GO "GO:0005634; nucleus
cell wall biosynthesis (sensu Fungi); GO:0009272; GO:0009272
GO:0051072; 4,6-pyruvylated galactose residue biosynthesis
GO:0043565; sequence specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL089C and YBR182C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Mads BoX protein; cv=name_description; date=20091221" ; primary_name "mbx2" ; product "MADS-box transcription factor Pvg4 (predicted)" ;
chromosome2 GeneDB CDS 3626639 3627757 . + . mRNA SPBC317.01 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3627758 3628565 . + . mRNA SPBC317.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC317.01" ; systematic_id "SPBC317.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3627758 3632669 . + . misc_feature unknown_3136 ; note "gene free region" ;
chromosome2 GeneDB misc_feature 3632529 3632669 . + . misc_feature unknown_3137 ; note "nominal overlap with SPBP8B7 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 3632529 3634099 . + . misc_feature unknown_3138 ; note "gene free region" ;
chromosome2 GeneDB 3'-UTR 3633568 3634099 . - . mRNA SPBP8B7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.01c" ; systematic_id "SPBP8B7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3634100 3634525 . - . mRNA SPBP8B7.01c ; systematic_id "SPBP8B7.01c" ; colour "7" ; gene "SPBP8B7.01c" ; Alias "pop7" ; db_xref "SPD:42/42B01" ; obsolete_name "pop6" ; GO "GO:0005655; nucleolar ribonuclease P complex
GO:0000172; ribonuclease MRP complex
GO:0034965; intronic box C/D sno processing
GO:0006379; mRNA cleavage
GO:0006364; rRNA processing
GO:0008033; tRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR167C; date=20080901 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20080202 ||| term=human POP7 ortholog; date=20101028" ; primary_name "pop7" ; product "RNAseP RNAse MRP subunit Pop7 (predicted)" ;
chromosome2 GeneDB CDS 3634100 3634159 . - . mRNA SPBP8B7.01c ; colour "7" ;
chromosome2 GeneDB CDS 3634229 3634364 . - . mRNA SPBP8B7.01c ; colour "7" ;
chromosome2 GeneDB CDS 3634413 3634525 . - . mRNA SPBP8B7.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 3634160 3634174 . - . misc_feature unknown_3139 ; colour "6" ; note "ctaacatagctgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3634223 3634228 . - . misc_feature unknown_3140 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3634365 3634380 . - . misc_feature unknown_3141 ; colour "6" ; note "ctaacaacaggcttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3634407 3634412 . - . misc_feature unknown_3142 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3634524 3634610 . - . mRNA SPBP8B7.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.01c" ; systematic_id "SPBP8B7.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3635435 3635444 . + . mRNA SPBP8B7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.02" ; systematic_id "SPBP8B7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3635445 3636230 . + . mRNA SPBP8B7.02 ; db_xref "SPD:09/09H01" ; systematic_id "SPBP8B7.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBP8B7.02" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3635445 3636230 . + . mRNA SPBP8B7.02 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 3636231 3636428 . + . mRNA SPBP8B7.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.02" ; systematic_id "SPBP8B7.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3636475 3636554 . - . mRNA SPBP8B7.03c ; ID "SPBP8B7.03c" ; systematic_id "SPBP8B7.03c" ; note "mRNA from AU011609" ;
chromosome2 GeneDB CDS_parts 3636555 3637646 . - . mRNA SPBP8B7.03c ; systematic_id "SPBP8B7.03c" ; colour "7" ; gene "rpl402 ||| rpl4-2 ||| rpl4 ||| SPBP8B7.03c" ; Alias "rpl402" ; db_xref "SPD:17/17B03" ; synonym "rpl4-2 ||| rpl4" ; GO "GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, acetylated; qualifier=predicted; cv=pt_mod; date=20060518 ||| term=orthologous to S. cerevisiae YBR031W and YDR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl402" ; product "60S ribosomal protein L2 (predicted)" ;
chromosome2 GeneDB CDS 3636555 3637646 . - . mRNA SPBP8B7.03c ; colour "7" ;
chromosome2 GeneDB CDS_parts 3638440 3640941 . + . mRNA SPBP8B7.04 ; systematic_id "SPBP8B7.04" ; colour "8" ; gene "SPBP8B7.04 ||| mug45" ; db_xref "SPD:29/29A10" ; Alias "mug45" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug45" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3638440 3638511 . + . mRNA SPBP8B7.04 ; colour "8" ;
chromosome2 GeneDB CDS 3638554 3640941 . + . mRNA SPBP8B7.04 ; colour "8" ;
chromosome2 GeneDB misc_feature 3638512 3638517 . + . misc_feature unknown_3143 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3638541 3638553 . + . misc_feature unknown_3144 ; colour "6" ; note "ctaaccgttgcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3640990 3641215 . - . mRNA SPBP8B7.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.05c" ; systematic_id "SPBP8B7.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3641216 3641950 . - . mRNA SPBP8B7.05c ; db_xref "SPD:08/08H05" ; systematic_id "SPBP8B7.05c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL036W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004089; carbonate dehydratase activity
GO:0033554; cellular response to stress
GO:0006730; one-carbon metabolic process" ; gene "SPBP8B7.05c" ; product "carbonic anhydrase (predicted)" ; EC_number "4.2.1.1" ;
chromosome2 GeneDB CDS 3641216 3641950 . - . mRNA SPBP8B7.05c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3641951 3642424 . - . mRNA SPBP8B7.05c ; ID "SPBP8B7.05c" ; systematic_id "SPBP8B7.05c" ; note "mRNA from AU010885" ;
chromosome2 GeneDB CDS_parts 3643189 3643584 . + . mRNA SPBP8B7.06 ; systematic_id "SPBP8B7.06" ; colour "2" ; gene "rpp201 ||| rpp2 ||| rpp2-1 ||| SPBP8B7.06" ; Alias "rpp201" ; db_xref "SPD:31/31D03" ; synonym "rpp2 ||| rpp2-1" ; GO "GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006414; translational elongation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL039W and YDR382W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpp201" ; product "60S acidic ribosomal protein P2A subunit (predicted)" ;
chromosome2 GeneDB CDS 3643189 3643497 . + . mRNA SPBP8B7.06 ; colour "2" ;
chromosome2 GeneDB CDS 3643561 3643584 . + . mRNA SPBP8B7.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 3643498 3643503 . + . misc_feature unknown_3145 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 3643498 3643560 . + . intron SPBP8B7.06 ; systematic_id "SPBP8B7.06" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3643548 3643560 . + . misc_feature unknown_3146 ; colour "6" ; note "ctaacaattttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3643585 3643630 . + . mRNA SPBP8B7.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.06" ; systematic_id "SPBP8B7.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3643818 3645442 . - . mRNA SPBP8B7.07c ; systematic_id "SPBP8B7.07c" ; colour "7" ; gene "set6 ||| SPBP8B7.07c" ; Alias "set6" ; db_xref "SPD:45/45D08" ; GO "GO:0018024; histone-lysine N-methyltransferase activity
GO:0016571; histone methylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-MYND type; date=19700101 ||| term=SET domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SMYD1 and SMYD2 and SMYD3 ortholog; date=20100908" ; primary_name "set6" ; product "histone lysine methyltransferase Set6 (predicted)" ;
chromosome2 GeneDB CDS 3643818 3645050 . - . mRNA SPBP8B7.07c ; colour "7" ;
chromosome2 GeneDB CDS 3645186 3645325 . - . mRNA SPBP8B7.07c ; colour "7" ;
chromosome2 GeneDB CDS 3645364 3645442 . - . mRNA SPBP8B7.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 3645051 3645066 . - . misc_feature unknown_3147 ; colour "6" ; note "ctaacaggctttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3645180 3645185 . - . misc_feature unknown_3148 ; colour "6" ; note "gtaaac, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3645326 3645338 . - . misc_feature unknown_3149 ; colour "6" ; note "ctaaatcttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3645358 3645363 . - . misc_feature unknown_3150 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3645441 3645504 . - . mRNA SPBP8B7.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.07c" ; systematic_id "SPBP8B7.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3645659 3646749 . - . mRNA SPBP8B7.08c ; db_xref "SPD:17/17A09" ; systematic_id "SPBP8B7.08c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR435C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006481; C-terminal protein amino acid methylation
GO:0003880; C-terminal protein carboxyl methyltransferase activity
GO:0043623; cellular protein complex assembly" ; gene "SPBP8B7.08c" ; product "leucine carboxyl methyltransferase Ppm1 (predicted)" ; EC_number "2.1.1.-" ;
chromosome2 GeneDB CDS 3645659 3645940 . - . mRNA SPBP8B7.08c ; colour "7" ;
chromosome2 GeneDB CDS 3645990 3646258 . - . mRNA SPBP8B7.08c ; colour "7" ;
chromosome2 GeneDB CDS 3646315 3646438 . - . mRNA SPBP8B7.08c ; colour "7" ;
chromosome2 GeneDB CDS 3646492 3646749 . - . mRNA SPBP8B7.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 3645941 3645954 . - . misc_feature unknown_3151 ; colour "6" ; note "ctaacaaaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3645984 3645989 . - . misc_feature unknown_3152 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3646259 3646271 . - . misc_feature unknown_3153 ; colour "6" ; note "ctgaccataaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3646309 3646314 . - . misc_feature unknown_3154 ; colour "6" ; note "gtgagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3646439 3646452 . - . misc_feature unknown_3155 ; colour "6" ; note "ctaactacagtaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3646486 3646491 . - . misc_feature unknown_3156 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 3647074 3647144 . - . mRNA SPBP8B7.09c ; ID "SPBP8B7.09c" ; systematic_id "SPBP8B7.09c" ; note "mRNA from AU010143" ;
chromosome2 GeneDB CDS_parts 3647145 3650081 . - . mRNA SPBP8B7.09c ; systematic_id "SPBP8B7.09c" ; colour "7" ; gene "los1 ||| SPBP8B7.09c" ; Alias "los1" ; db_xref "SPD:47/47E08" ; GO "GO:0016363; nuclear matrix
GO:0005525; GTP binding
GO:0008536; Ran GTPase binding
GO:0000049; tRNA binding
GO:0006409; tRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=orthologous to S. cerevisiae YKL205W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "los1" ; product "karyopherin exportin T Los1 (predicted)" ;
chromosome2 GeneDB CDS 3647145 3650081 . - . mRNA SPBP8B7.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3650080 3650124 . - . mRNA SPBP8B7.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.09c" ; systematic_id "SPBP8B7.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3650446 3651737 . + . misc_RNA SPNCRNA.575 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.575" ; synonym "SPNG2AF51" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB 3'-UTR 3650455 3650626 . - . mRNA SPBP8B7.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.10c" ; systematic_id "SPBP8B7.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3650627 3651820 . - . mRNA SPBP8B7.10c ; db_xref "SPD:19/19A11" ; systematic_id "SPBP8B7.10c" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR078W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; gene "SPBP8B7.10c" ; product "U3 snoRNP-associated protein Utp16 (predicted)" ;
chromosome2 GeneDB CDS 3650627 3651086 . - . mRNA SPBP8B7.10c ; colour "7" ;
chromosome2 GeneDB CDS 3651174 3651716 . - . mRNA SPBP8B7.10c ; colour "7" ;
chromosome2 GeneDB CDS 3651783 3651820 . - . mRNA SPBP8B7.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 3651087 3651096 . - . misc_feature unknown_3157 ; colour "6" ; note "ttgataaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3651168 3651173 . - . misc_feature unknown_3158 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3651717 3651757 . - . misc_feature unknown_3159 ; colour "6" ; note "ttaattaacgaaaattgaaattactttcttcttcttatttaccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3651777 3651782 . - . misc_feature unknown_3160 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3652211 3652306 . + . mRNA SPBP8B7.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.11" ; systematic_id "SPBP8B7.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3652307 3653795 . + . mRNA SPBP8B7.11 ; systematic_id "SPBP8B7.11" ; colour "7" ; gene "glp1 ||| nxt3 ||| SPBP8B7.11" ; Alias "nxt3" ; db_xref "SPD:24/24A07" ; synonym "glp1" ; GO "GO:0005737; cytoplasm
GO:0060628; regulation of ER to Golgi vesicle- mediated transport
GO:0016579; protein deubiquitination
GO:0005515; protein binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YNR051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, G3BP-Like Protein; cv=name_description; date=20090318 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nxt3" ; product "ubiquitin protease cofactor Glp1 (predicted)" ;
chromosome2 GeneDB CDS 3652307 3652420 . + . mRNA SPBP8B7.11 ; colour "7" ;
chromosome2 GeneDB CDS 3652489 3652563 . + . mRNA SPBP8B7.11 ; colour "7" ;
chromosome2 GeneDB CDS 3652680 3653795 . + . mRNA SPBP8B7.11 ; colour "7" ;
chromosome2 GeneDB misc_feature 3652421 3652426 . + . misc_feature unknown_3161 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3652474 3652488 . + . misc_feature unknown_3162 ; colour "6" ; note "ctaactgtaatacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3652564 3652569 . + . misc_feature unknown_3163 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3652668 3652679 . + . misc_feature unknown_3164 ; colour "6" ; note "ttaacgtgttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3653796 3654191 . + . mRNA SPBP8B7.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.11" ; systematic_id "SPBP8B7.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snoRNA 3654333 3654416 . - . snoRNA SPSNORNA.27 ; Alias "snoR47" ; systematic_id "SPSNORNA.27" ; controlled_curation "term=orthologous to S. cerevisiae snR47; date=20070104" ; primary_name "snoR47" ; gene "snoR47 ||| SPSNORNA.27" ; product "small nucleolar RNA R47 (predicted)" ;
chromosome2 GeneDB 3'-UTR 3654470 3654473 . - . mRNA SPBP8B7.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.12c" ; systematic_id "SPBP8B7.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3654474 3655136 . - . mRNA SPBP8B7.12c ; systematic_id "SPBP8B7.12c" ; colour "2" ; gene "fta3 ||| SPBP8B7.12c ||| sma3" ; Alias "fta3" ; db_xref "SPD:07/07F07" ; synonym "sma3" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106 ||| term=species distribution, conserved in Eukaryotes; date=20091106 ||| term=species distribution, conserved in Eukaryotes only ; date=20091106 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106" ; primary_name "fta3" ; product "CENP-H homolog Fta3" ;
chromosome2 GeneDB CDS 3654474 3655136 . - . mRNA SPBP8B7.12c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3655137 3655279 . - . mRNA SPBP8B7.12c ; ID "SPBP8B7.12c" ; systematic_id "SPBP8B7.12c" ; note "mRNA from AU006623" ;
chromosome2 GeneDB 5'-UTR 3655454 3655544 . + . mRNA SPBP8B7.13 ; ID "SPBP8B7.13" ; systematic_id "SPBP8B7.13" ; note "mRNA from AU006525" ;
chromosome2 GeneDB CDS_parts 3655545 3656375 . + . mRNA SPBP8B7.13 ; systematic_id "SPBP8B7.13" ; colour "7" ; gene "SPBP8B7.13" ; db_xref "SPD:10/10G03" ; Alias "vac7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL054W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0010513; positive regulation of phosphatidylinositol biosynthetic process
GO:0000329; fungal-type vacuole membrane
GO:0071627; integral to fungal-type vacuole membrane
GO:0070772; PAS complex
GO:0000011; vacuole inheritance
GO:0045860; positive regulation of protein kinase activity" ; primary_name "vac7" ; product "Vac7 ortholog (predicted)" ;
chromosome2 GeneDB CDS 3655545 3655704 . + . mRNA SPBP8B7.13 ; colour "7" ;
chromosome2 GeneDB CDS 3655780 3656375 . + . mRNA SPBP8B7.13 ; colour "7" ;
chromosome2 GeneDB misc_feature 3655705 3655710 . + . misc_feature unknown_3165 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3655764 3655779 . + . misc_feature unknown_3166 ; colour "6" ; note "ttaacatgcattttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3656376 3656613 . + . mRNA SPBP8B7.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.13" ; systematic_id "SPBP8B7.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3656780 3656885 . - . mRNA SPBP8B7.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.14c" ; systematic_id "SPBP8B7.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3656886 3658752 . - . mRNA SPBP8B7.14c ; systematic_id "SPBP8B7.14c" ; colour "2" ; gene "dpb2 ||| SPBP8B7.14c" ; Alias "dpb2" ; db_xref "SPD:36/36H09" ; GO "GO:0008622; epsilon DNA polymerase complex
GO:0006270; DNA replication initiation
GO:0003688; DNA replication origin binding
GO:0003688; DNA replication origin binding
GO:0003887; DNA-directed DNA polymerase activity
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12925774; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12925774; date=20100708 ||| term=orthologous to S. cerevisiae YPR175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dpb2" ; product "DNA polymerase epsilon catalytic subunit B, Dpb2" ;
chromosome2 GeneDB CDS 3656886 3657041 . - . mRNA SPBP8B7.14c ; colour "2" ;
chromosome2 GeneDB CDS 3657082 3657192 . - . mRNA SPBP8B7.14c ; colour "2" ;
chromosome2 GeneDB CDS 3657235 3658752 . - . mRNA SPBP8B7.14c ; colour "2" ;
chromosome2 GeneDB misc_feature 3657042 3657054 . - . misc_feature unknown_3167 ; colour "6" ; note "ctaatatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3657076 3657081 . - . misc_feature unknown_3168 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3657193 3657205 . - . misc_feature unknown_3169 ; colour "6" ; note "ctaatttgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3657229 3657234 . - . misc_feature unknown_3170 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3658751 3658923 . - . mRNA SPBP8B7.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.14c" ; systematic_id "SPBP8B7.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 3659043 3659390 . - . LTR unknown_3171 ; colour "4" ; note "tf2-type LTR" ;
chromosome2 GeneDB 3'-UTR 3660078 3660172 . - . mRNA SPBP8B7.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.15c" ; systematic_id "SPBP8B7.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3660173 3661621 . - . mRNA SPBP8B7.15c ; db_xref "SPD:23/23D03" ; systematic_id "SPBP8B7.15c" ; colour "7" ; GO "GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation
GO:0005847; mRNA cleavage and polyadenylation specificity factor complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20060504 ||| term=ubiquitin-protein ligase E3; date=20060504 ||| term=zf-CCHC type (zinc knuckle); date=20060518 ||| term=zinc finger protein; date=20060518 ||| term=orthologous to S. cerevisiae YKL059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBP8B7.15c" ; product "ubiquitin-protein ligase E3 RBBP6 family involved in mRNA cleavage (predicted)" ;
chromosome2 GeneDB CDS 3660173 3661621 . - . mRNA SPBP8B7.15c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3661620 3662441 . - . mRNA SPBP8B7.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.15c" ; systematic_id "SPBP8B7.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3662735 3662853 . - . mRNA SPBP8B7.16c ; ID "SPBP8B7.16c" ; systematic_id "SPBP8B7.16c" ; note "mRNA from SPP68DBP" ;
chromosome2 GeneDB CDS_parts 3662854 3665301 . - . mRNA SPBP8B7.16c ; systematic_id "SPBP8B7.16c" ; colour "2" ; gene "dbp2 ||| SPBP8B7.16c" ; note "large 3' intron like S. cerevisiae DBP2" ; Alias "dbp2" ; db_xref "SPD:40/40H08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YNL112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human DDX5 and DDX17 ortholog; date=20091118 ||| term=disease associated, cancer; date=20100217" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0006364; rRNA processing" ; primary_name "dbp2" ; product "ATP-dependent RNA helicase Dbp2" ;
chromosome2 GeneDB CDS 3662854 3663206 . - . mRNA SPBP8B7.16c ; colour "2" ;
chromosome2 GeneDB CDS 3663906 3665137 . - . mRNA SPBP8B7.16c ; colour "2" ;
chromosome2 GeneDB CDS 3665234 3665301 . - . mRNA SPBP8B7.16c ; colour "2" ;
chromosome2 GeneDB misc_feature 3663207 3663220 . - . misc_feature unknown_3172 ; colour "6" ; note "ctaactttttatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3663207 3663905 . - . intron SPBP8B7.16c ; systematic_id "SPBP8B7.16c" ; note "confirmed by EST" ;
chromosome2 GeneDB misc_feature 3663900 3663905 . - . misc_feature unknown_3173 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3665138 3665151 . - . misc_feature unknown_3174 ; colour "6" ; note "ttaacattttacag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3665138 3665233 . - . intron SPBP8B7.16c ; systematic_id "SPBP8B7.16c" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 3665228 3665233 . - . misc_feature unknown_3175 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3665302 3665346 . - . mRNA SPBP8B7.16c ; ID "SPBP8B7.16c" ; systematic_id "SPBP8B7.16c" ; note "mRNA from AU009130" ;
chromosome2 GeneDB 3'-UTR 3665799 3665867 . - . mRNA SPBP8B7.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.17c" ; systematic_id "SPBP8B7.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3665868 3667388 . - . mRNA SPBP8B7.17c ; db_xref "SPD:24/24F08" ; systematic_id "SPBP8B7.17c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TENA/THI domain; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPR121W and YPL258C and YOL055C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBP8B7.17c" ; product "TENA/THI family protein" ;
chromosome2 GeneDB CDS 3665868 3667388 . - . mRNA SPBP8B7.17c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3667387 3667725 . - . mRNA SPBP8B7.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.17c" ; systematic_id "SPBP8B7.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3667996 3668062 . - . mRNA SPBP8B7.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.18c" ; systematic_id "SPBP8B7.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3668063 3669718 . - . mRNA SPBP8B7.18c ; db_xref "SPD:34/34G04" ; systematic_id "SPBP8B7.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TENA/THI domain; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPR121W and YPL258C and YOL055C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBP8B7.18c" ; product "TENA/THI family protein" ;
chromosome2 GeneDB CDS 3668063 3669718 . - . mRNA SPBP8B7.18c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3669717 3669975 . - . mRNA SPBP8B7.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.18c" ; systematic_id "SPBP8B7.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3670290 3670825 . + . misc_RNA SPNCRNA.427 ; db_xref "PMID:18488015" ; synonym "SPNG1861" ; systematic_id "SPNCRNA.427" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 3671407 3671458 . + . mRNA SPBP8B7.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.19" ; systematic_id "SPBP8B7.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3671459 3674518 . + . mRNA SPBP8B7.19 ; systematic_id "SPBP8B7.19" ; colour "2" ; gene "SPBP8B7.19 ||| spt16" ; Alias "spt16" ; db_xref "SPD:29/29H10" ; GO "GO:0035101; FACT complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0006261; DNA-dependent DNA replication
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0043486; histone exchange
GO:0006334; nucleosome assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL207W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17614284; date=20070813 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "spt16" ; product "FACT complex component Spt16" ;
chromosome2 GeneDB CDS 3671459 3674518 . + . mRNA SPBP8B7.19 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3674519 3674622 . + . mRNA SPBP8B7.19 ; ID "SPBP8B7.19" ; systematic_id "SPBP8B7.19" ; note "mRNA from AU006641" ;
chromosome2 GeneDB 3'-UTR 3674705 3674750 . - . mRNA SPBP8B7.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.20c" ; systematic_id "SPBP8B7.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3674751 3676577 . - . mRNA SPBP8B7.20c ; db_xref "SPD:36/36F10" ; systematic_id "SPBP8B7.20c" ; colour "7" ; GO "GO:0031167; rRNA methylation
GO:0008173; RNA methyltransferase activity
GO:0006364; rRNA processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBP8B7.20c" ; product "RNA methyltransferase Nop2 (predicted)" ;
chromosome2 GeneDB CDS 3674751 3676577 . - . mRNA SPBP8B7.20c ; colour "7" ;
chromosome2 GeneDB LTR 3676727 3677069 . + . LTR unknown_3176 ; colour "4" ; note "degraded tf1-type LTR" ;
chromosome2 GeneDB 5'-UTR 3677681 3677712 . + . mRNA SPBP8B7.21 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.21" ; systematic_id "SPBP8B7.21" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3677713 3679289 . + . mRNA SPBP8B7.21 ; systematic_id "SPBP8B7.21" ; colour "2" ; gene "SPBP8B7.21 ||| ubp3" ; db_xref "SPD:25/25D05" ; Alias "ubp3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER151C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human USP10 ortholog; date=20101001" ; GO "GO:0060628; regulation of ER to Golgi vesicle- mediated transport
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005737; cytoplasm
GO:0005515; protein binding" ; primary_name "ubp3" ; product "ubiquitin C-terminal hydrolase Ubp3" ;
chromosome2 GeneDB CDS 3677713 3677793 . + . mRNA SPBP8B7.21 ; colour "2" ;
chromosome2 GeneDB CDS 3677832 3679289 . + . mRNA SPBP8B7.21 ; colour "2" ;
chromosome2 GeneDB misc_feature 3677794 3677799 . + . misc_feature unknown_3177 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3677821 3677831 . + . misc_feature unknown_3178 ; colour "6" ; note "ctaacgtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3679290 3679600 . + . mRNA SPBP8B7.21 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.21" ; systematic_id "SPBP8B7.21" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3679990 3680025 . + . mRNA SPBP8B7.22 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.22" ; systematic_id "SPBP8B7.22" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3680026 3680756 . + . mRNA SPBP8B7.22 ; systematic_id "SPBP8B7.22" ; colour "7" ; gene "erd2 ||| SPBP8B7.22" ; Alias "erd2" ; db_xref "SPD:08/08G05" ; GO "GO:0006621; protein retention in ER
GO:0030176; integral to endoplasmic reticulum membrane
GO:0045015; HDEL sequence binding
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL040C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "erd2" ; product "HDEL receptor (predicted)" ;
chromosome2 GeneDB CDS 3680026 3680047 . + . mRNA SPBP8B7.22 ; colour "7" ;
chromosome2 GeneDB CDS 3680085 3680210 . + . mRNA SPBP8B7.22 ; colour "7" ;
chromosome2 GeneDB CDS 3680266 3680756 . + . mRNA SPBP8B7.22 ; colour "7" ;
chromosome2 GeneDB misc_feature 3680048 3680053 . + . misc_feature unknown_3179 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3680074 3680084 . + . misc_feature unknown_3180 ; colour "6" ; note "ctaatcattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3680211 3680216 . + . misc_feature unknown_3181 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3680246 3680265 . + . misc_feature unknown_3182 ; colour "6" ; note "ctaactcttttttttaacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3680757 3681031 . + . mRNA SPBP8B7.22 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.22" ; systematic_id "SPBP8B7.22" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3681913 3682060 . + . mRNA SPBP8B7.23 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.23" ; systematic_id "SPBP8B7.23" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3682061 3684082 . + . mRNA SPBP8B7.23 ; db_xref "SPD:46/46C07" ; systematic_id "SPBP8B7.23" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20060725 ||| term=ubiquitin-protein ligase E3; date=20060504 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR427W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RNF10 ortholog; date=20100301" ; gene "SPBP8B7.23" ; product "ubiquitin-protein ligase E3 implicated in trancription (predicted)" ;
chromosome2 GeneDB CDS 3682061 3684082 . + . mRNA SPBP8B7.23 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3684083 3684280 . + . mRNA SPBP8B7.23 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.23" ; systematic_id "SPBP8B7.23" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3684389 3684652 . - . mRNA SPBP8B7.24c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.24c" ; systematic_id "SPBP8B7.24c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3684653 3685265 . - . mRNA SPBP8B7.24c ; systematic_id "SPBP8B7.24c" ; colour "2" ; db_xref "SPD:06/06H05" ; Alias "atg8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphatidylethanolominated; qualifier=predicted; cv=pt_mod; date=20091125 ||| term=modification, lipidated; qualifier=predicted; cv=pt_mod; date=20091125" ; GO "GO:0005776; autophagic vacuole
GO:0006914; autophagy
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0006944; membrane fusion
GO:0032258; CVT pathway
GO:0000747; sexual reproduction" ; primary_name "atg8" ; product "autophagy associated protein Atg8" ;
chromosome2 GeneDB CDS 3684653 3684928 . - . mRNA SPBP8B7.24c ; colour "2" ;
chromosome2 GeneDB CDS 3685095 3685150 . - . mRNA SPBP8B7.24c ; colour "2" ;
chromosome2 GeneDB CDS 3685232 3685265 . - . mRNA SPBP8B7.24c ; colour "2" ;
chromosome2 GeneDB misc_feature 3684929 3684940 . - . misc_feature unknown_3183 ; colour "6" ; note "ctaacttaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3685089 3685094 . - . misc_feature unknown_3184 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3685151 3685165 . - . misc_feature unknown_3185 ; colour "6" ; note "ctaattaataatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3685226 3685231 . - . misc_feature unknown_3186 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3685264 3685376 . - . mRNA SPBP8B7.24c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.24c" ; systematic_id "SPBP8B7.24c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3685871 3685900 . + . mRNA SPBP8B7.25 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.25" ; systematic_id "SPBP8B7.25" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3685901 3686599 . + . mRNA SPBP8B7.25 ; systematic_id "SPBP8B7.25" ; colour "7" ; gene "cyp4 ||| SPBP8B7.25" ; Alias "cyp4" ; db_xref "SPD:08/08C02" ; GO "GO:0005788; endoplasmic reticulum lumen" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR304C and YHR057C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cyp4" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp4 (predicted)" ;
chromosome2 GeneDB CDS 3685901 3686363 . + . mRNA SPBP8B7.25 ; colour "7" ;
chromosome2 GeneDB CDS 3686457 3686599 . + . mRNA SPBP8B7.25 ; colour "7" ;
chromosome2 GeneDB misc_feature 3686364 3686369 . + . misc_feature unknown_3187 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3686444 3686456 . + . misc_feature unknown_3188 ; colour "6" ; note "ctaattttatcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3686600 3686791 . + . mRNA SPBP8B7.25 ; ID "SPBP8B7.25" ; systematic_id "SPBP8B7.25" ; note "mRNA from AU012130" ;
chromosome2 GeneDB 5'-UTR 3687082 3687123 . + . mRNA SPBP8B7.26 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.26" ; systematic_id "SPBP8B7.26" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3687124 3687966 . + . mRNA SPBP8B7.26 ; db_xref "SPD:43/43D07" ; systematic_id "SPBP8B7.26" ; colour "8" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBP8B7.26" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3687124 3687208 . + . mRNA SPBP8B7.26 ; colour "8" ;
chromosome2 GeneDB CDS 3687263 3687966 . + . mRNA SPBP8B7.26 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 3687967 3688020 . + . mRNA SPBP8B7.26 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.26" ; systematic_id "SPBP8B7.26" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3688539 3691006 . + . mRNA SPBP8B7.27 ; systematic_id "SPBP8B7.27" ; colour "7" ; gene "SPBP8B7.27 ||| mug30" ; note "first exon may be incorrect" ; Alias "mug30" ; db_xref "SPD:28/28H03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20060518 ||| term=zf-C3HC4 type (RING finger); date=20060518 ||| term=zf-UBP type; date=20060518 ||| term=ubiquitin-protein ligase E3; date=20060504 ||| term=orthologous to S. cerevisiae YJR036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0019787; small conjugating protein ligase activity" ; primary_name "mug30" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB CDS 3688539 3688772 . + . mRNA SPBP8B7.27 ; colour "7" ;
chromosome2 GeneDB CDS 3688817 3691006 . + . mRNA SPBP8B7.27 ; colour "7" ;
chromosome2 GeneDB misc_feature 3688773 3688778 . + . misc_feature unknown_3189 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3688802 3688816 . + . misc_feature unknown_3190 ; colour "6" ; note "ttaacaaaattatag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 3691201 3691848 . - . mRNA SPBP8B7.28c ; systematic_id "SPBP8B7.28c" ; colour "2" ; gene "SPBP8B7.28c" ; db_xref "SPD:07/07D12" ; Alias "stc1" ; GO "GO:0043494; CLRC complex subunit
GO:0031618; nuclear centromeric heterochromatin
GO:0005515; protein binding
GO:0034629; cellular protein complex localization
GO:0030702; chromatin silencing at the centromere
GO:0031048; chromatin silencing by small RNA
GO:0000070; mitotic sister chromatid segregation
GO:0035389; establishment of chromatin silencing at the silent mating-type cassette
GO:0035390; establishment of chromatin silencing at the telomere
GO:0007126; meiosis
GO:0007126; meiosis
GO:0051570; regulation of H3 K9 methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, accumulation of non- coding outer repeat transcripts; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, siRNAs homologous to outer repeats undetectable; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, centromere function defective; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, chromosome segregation defects, lagging chromosomes; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, chromosome segregation defects, chromosome loss; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100318 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100318 ||| term=species distribution, conserved in Fungi only; date=20100318 ||| term=name description, SiRNA To Chromatin; cv=name_description; db_xref=PMID:20211136; date=20100318" ; primary_name "stc1" ; product "LIM-like protein linking chromatin modification to RNAi, Stc1" ;
chromosome2 GeneDB CDS 3691201 3691848 . - . mRNA SPBP8B7.28c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3692473 3692562 . + . mRNA SPBP8B7.29 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.29" ; systematic_id "SPBP8B7.29" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3692563 3694719 . + . mRNA SPBP8B7.29 ; db_xref "SPD:37/37F07" ; systematic_id "SPBP8B7.29" ; colour "7" ; GO "GO:0046820; 4-amino-4-deoxychorismate synthase activity
GO:0005737; cytoplasm
GO:0008153; para-aminobenzoic acid biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR033W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBP8B7.29" ; product "para-aminobenzoate synthase (predicted)" ;
chromosome2 GeneDB CDS 3692563 3694719 . + . mRNA SPBP8B7.29 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3694720 3694832 . + . mRNA SPBP8B7.29 ; ID "SPBP8B7.29" ; systematic_id "SPBP8B7.29" ; note "mRNA from AU007152" ;
chromosome2 GeneDB 3'-UTR 3695055 3695120 . - . mRNA SPBP8B7.30c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.30c" ; systematic_id "SPBP8B7.30c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3695121 3697694 . - . mRNA SPBP8B7.30c ; systematic_id "SPBP8B7.30c" ; colour "2" ; gene "SPBP8B7.30c ||| thi5" ; Alias "thi5" ; db_xref "SPD:38/38D11" ; GO "GO:0005634; nucleus
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0008270; zinc ion binding
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0034307; regulation of ascospore formation
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0006355; regulation of transcription, DNA- dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20060503 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=20060503 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060503 ||| term=misc functional group, membrane- tethered transcription factor; qualifier=predicted; db_xref=PMID:11790253; cv=m_f_g; date=20060503 ||| term=protein sequence feature, NLS; cv=sequence_feature; date=20060503 ||| term=gene expression, transcriptionally regulates nmt1; db_xref=PMID:16874521; cv=gene_ex; date=20060804 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPAC3C7.04 and SPAC1486.10 and SPCC417.09C; date=19700101 ||| term=gene expression, transcriptionally regulates genes involved in thiamin biosynthesis; cv=gene_ex; date=20071202 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "thi5" ; product "transcription factor Thi5" ;
chromosome2 GeneDB CDS 3695121 3697694 . - . mRNA SPBP8B7.30c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3698193 3698332 . + . mRNA SPBP8B7.31 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.31" ; systematic_id "SPBP8B7.31" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3698333 3699037 . + . mRNA SPBP8B7.31 ; db_xref "SPD:42/42G11" ; systematic_id "SPBP8B7.31" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016791; phosphoric monoester hydrolase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER134C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MDP1 ortholog; date=20100301 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; gene "SPBP8B7.31" ; product "acid phosphatase (predicted)" ;
chromosome2 GeneDB CDS 3698333 3698414 . + . mRNA SPBP8B7.31 ; colour "10" ;
chromosome2 GeneDB CDS 3698473 3698724 . + . mRNA SPBP8B7.31 ; colour "10" ;
chromosome2 GeneDB CDS 3698800 3698919 . + . mRNA SPBP8B7.31 ; colour "10" ;
chromosome2 GeneDB CDS 3698973 3699037 . + . mRNA SPBP8B7.31 ; colour "10" ;
chromosome2 GeneDB misc_feature 3698415 3698420 . + . misc_feature unknown_3191 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3698456 3698472 . + . misc_feature unknown_3192 ; colour "6" ; note "ctaacaaagtttcacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3699038 3699180 . + . mRNA SPBP8B7.31 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP8B7.31" ; systematic_id "SPBP8B7.31" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3699573 3700652 . - . mRNA SPBC19F5.01c ; systematic_id "SPBC19F5.01c" ; colour "2" ; gene "puc1 ||| SPBP8B7.32c ||| SPBC19F5.01c" ; Alias "puc1" ; db_xref "SPD:32/32D10" ; synonym "SPBP8B7.32c" ; GO "GO:0007096; regulation of exit from mitosis
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0016538; cyclin-dependent protein kinase regulator activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "puc1" ; product "cyclin Puc1" ;
chromosome2 GeneDB CDS 3699573 3700652 . - . mRNA SPBC19F5.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 3699823 3703528 . + . misc_feature unknown_3193 ; note "nominal overlap with cosmid SPBC19F5 and plasmid SPBP8B7" ;
chromosome2 GeneDB misc_RNA 3702503 3703319 . + . misc_RNA SPNCRNA.428 ; db_xref "PMID:18488015" ; synonym "SPNG1867" ; systematic_id "SPNCRNA.428" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 3'-UTR 3703525 3703741 . - . mRNA SPBC19F5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F5.02c" ; systematic_id "SPBC19F5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3703742 3705874 . - . mRNA SPBC19F5.02c ; db_xref "SPD:37/37E01" ; systematic_id "SPBC19F5.02c" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR324C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC19F5.02c" ; product "U3 snoRNP protein Utp4 (predicted)" ;
chromosome2 GeneDB CDS 3703742 3705874 . - . mRNA SPBC19F5.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3705873 3706280 . - . mRNA SPBC19F5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F5.02c" ; systematic_id "SPBC19F5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3706665 3706731 . + . mRNA SPBC19F5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F5.03" ; systematic_id "SPBC19F5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3706732 3708528 . + . mRNA SPBC19F5.03 ; db_xref "SPD:36/36D10" ; systematic_id "SPBC19F5.03" ; colour "7" ; GO "GO:0000139; Golgi membrane
GO:0005789; endoplasmic reticulum membrane
GO:0030173; integral to Golgi membrane
GO:0030176; integral to endoplasmic reticulum membrane
GO:0005741; mitochondrial outer membrane
GO:0004437; inositol or phosphatidylinositol phosphatase activity
GO:0046856; phosphatidylinositol metabolic process
GO:0046856; phosphoinositide dephosphorylation
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC19F5.03" ; product "inositol polyphosphate phosphatase (predicted)" ;
chromosome2 GeneDB CDS 3706732 3708528 . + . mRNA SPBC19F5.03 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3708529 3708863 . + . mRNA SPBC19F5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F5.03" ; systematic_id "SPBC19F5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3709250 3709271 . + . mRNA SPBC19F5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F5.04" ; systematic_id "SPBC19F5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3709272 3711202 . + . mRNA SPBC19F5.04 ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00300; ||| SPD:37/37A08" ; systematic_id "SPBC19F5.04" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER052C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009088; threonine biosynthesis
GO:0006555; methionine metabolism
GO:0004072; aspartate kinase activity" ; gene "SPBC19F5.04" ; product "aspartate kinase (predicted)" ; EC_number "2.7.2.4" ;
chromosome2 GeneDB CDS 3709272 3709384 . + . mRNA SPBC19F5.04 ; colour "7" ;
chromosome2 GeneDB CDS 3709756 3711202 . + . mRNA SPBC19F5.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 3709385 3709390 . + . misc_feature unknown_3194 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3709739 3709755 . + . misc_feature unknown_3195 ; colour "6" ; note "ctaaataatttatttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3711203 3711230 . + . mRNA SPBC19F5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F5.04" ; systematic_id "SPBC19F5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3711604 3713619 . - . mRNA SPBC19F5.05c ; systematic_id "SPBC19F5.05c" ; colour "7" ; gene "SPBC19F5.05c ||| SPBC25D12.01c ||| ppp1" ; Alias "ppp1" ; db_xref "SPD:27/27E05" ; synonym "SPBC25D12.01c" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR103W; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ppp1" ; product "pescadillo-family BRCT domain protein (predicted)" ; reserved_name "ppp1" ;
chromosome2 GeneDB CDS 3711604 3713237 . - . mRNA SPBC19F5.05c ; colour "7" ;
chromosome2 GeneDB CDS 3713392 3713559 . - . mRNA SPBC19F5.05c ; colour "7" ;
chromosome2 GeneDB CDS 3713598 3713619 . - . mRNA SPBC19F5.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 3712044 3713619 . - . misc_feature unknown_3196 ; note "SPBC25D12.01c; see SPBC19F5.05c for full length CDS" ;
chromosome2 GeneDB misc_feature 3712044 3713822 . + . misc_feature unknown_3197 ; note "nominal overlap with cosmid SPBC25D12 and cosmid SPBC19F5" ;
chromosome2 GeneDB misc_feature 3713238 3713253 . - . misc_feature unknown_3198 ; colour "6" ; note "ctaataaatataatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3713386 3713391 . - . misc_feature unknown_3199 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3713560 3713573 . - . misc_feature unknown_3200 ; colour "6" ; note "ctaattgaaaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3713592 3713597 . - . misc_feature unknown_3201 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3713618 3713649 . - . mRNA SPBC19F5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC19F5.05c" ; systematic_id "SPBC19F5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 3714033 3714382 . - . LTR unknown_3202 ; note "lone LTR - tf1 type" ;
chromosome2 GeneDB 3'-UTR 3715078 3715199 . - . mRNA SPBC25D12.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25D12.02c" ; systematic_id "SPBC25D12.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3715200 3717051 . - . mRNA SPBC25D12.02c ; systematic_id "SPBC25D12.02c" ; colour "2" ; gene "dnt1 ||| SPBC25D12.02c" ; Alias "dnt1" ; db_xref "SPD:46/46A05" ; GO "GO:0005730; nucleolus
GO:0005819; spindle
GO:0005515; protein binding
GO:0000183; chromatin silencing at rDNA
GO:0031030; negative regulation of septation initiation signaling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; qualifier=deletion; cv=phenotype; date=20060915 ||| term=orthologous to S. cerevisiae YKR010C and YJL076W; db_xref=PMID:17538026; date=20071009 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target of Clp1; qualifier=phosphorylated_by; date=20090926" ; primary_name "dnt1" ; product "nucleolar protein Dnt1" ;
chromosome2 GeneDB CDS 3715200 3716856 . - . mRNA SPBC25D12.02c ; colour "2" ;
chromosome2 GeneDB CDS 3716909 3717051 . - . mRNA SPBC25D12.02c ; colour "2" ;
chromosome2 GeneDB misc_feature 3716857 3716875 . - . misc_feature unknown_3203 ; colour "6" ; note "ttaacgaaaattattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3716903 3716908 . - . misc_feature unknown_3204 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3717050 3717221 . - . mRNA SPBC25D12.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25D12.02c" ; systematic_id "SPBC25D12.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3717577 3717637 . - . mRNA SPBC25D12.03c ; ID "SPBC25D12.03c" ; systematic_id "SPBC25D12.03c" ; note "experimental" ;
chromosome2 GeneDB CDS_parts 3717638 3719920 . - . mRNA SPBC25D12.03c ; systematic_id "SPBC25D12.03c" ; colour "2" ; gene "mcm7 ||| SPBC25D12.03c" ; Alias "mcm7" ; db_xref "SPD:33/33G03" ; GO "GO:0006270; DNA replication initiation
GO:0042555; MCM complex
GO:0000084; S phase of mitotic cell cycle
GO:0005656; pre-replicative complex
GO:0006271; DNA strand elongation during DNA replication
GO:0004003; ATP-dependent DNA helicase activity
GO:0031261; DNA replication preinitiation complex
GO:0031390; nuclear replication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:1160526; date=20100708 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=orthologous to S. cerevisiae YBR202W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "mcm7" ; product "MCM complex subunit Mcm7" ;
chromosome2 GeneDB CDS 3717638 3719920 . - . mRNA SPBC25D12.03c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3719921 3719998 . - . mRNA SPBC25D12.03c ; ID "SPBC25D12.03c" ; systematic_id "SPBC25D12.03c" ; note "experimental" ;
chromosome2 GeneDB 5'-UTR 3721622 3721754 . + . mRNA SPBC25D12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25D12.04" ; systematic_id "SPBC25D12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3721755 3722930 . + . mRNA SPBC25D12.04 ; systematic_id "SPBC25D12.04" ; colour "2" ; gene "suc22 ||| SPBC25D12.04" ; Alias "suc22" ; db_xref "SPD:32/32E12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL026W and YGR180C; date=19700101 ||| term=localization, undergoes nucleocytoplasmic shuttling; cv=localization; date=20080115 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=gene expression, promoter contains MCB; db_xref=PMID:8842148; date=20100805" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005971; ribonucleoside-diphosphate reductase complex
GO:0005515; protein binding
GO:0004748; ribonucleoside-diphosphate reductase activity
GO:0009216; purine deoxyribonucleoside triphosphate biosynthesis
GO:0042278; purine nucleoside metabolism
GO:0009212; pyrimidine deoxyribonucleoside triphosphate biosynthesis
GO:0006213; pyrimidine nucleoside metabolism
GO:0090329; regulation of DNA-dependent replication
GO:0007090; regulation of S phase of mitotic cell cycle" ; primary_name "suc22" ; product "ribonucleotide reductase small subunit Suc22" ; EC_number "1.17.4.1" ;
chromosome2 GeneDB CDS 3721755 3722930 . + . mRNA SPBC25D12.04 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3722931 3722996 . + . mRNA SPBC25D12.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25D12.04" ; systematic_id "SPBC25D12.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3723383 3725029 . + . mRNA SPBC25D12.05 ; systematic_id "SPBC25D12.05" ; colour "2" ; gene "trm1 ||| SPBC25D12.05" ; Alias "trm1" ; db_xref "SPD:33/33C08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR120C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004809; tRNA (guanine-N2-)-methyltransferase activity
GO:0030488; tRNA methylation
GO:0005739; mitochondrion
GO:0031965; nuclear membrane
GO:0008033; tRNA processing" ; primary_name "trm1" ; product "N2,N2-dimethylguanosine tRNA methyltransferase" ; EC_number "2.1.1.32" ;
chromosome2 GeneDB CDS 3723383 3725029 . + . mRNA SPBC25D12.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3725030 3725090 . + . mRNA SPBC25D12.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25D12.05" ; systematic_id "SPBC25D12.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3725363 3725429 . + . mRNA SPBC25D12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25D12.06" ; systematic_id "SPBC25D12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3725430 3727127 . + . mRNA SPBC25D12.06 ; db_xref "SPD:35/35D04" ; systematic_id "SPBC25D12.06" ; colour "10" ; GO "GO:0008026; ATP-dependent helicase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100824" ; gene "SPBC25D12.06" ; product "RNA helicase (predicted)" ;
chromosome2 GeneDB CDS 3725430 3727127 . + . mRNA SPBC25D12.06 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 3727012 3727331 . - . mRNA SPBC13G1.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.14c" ; systematic_id "SPBC13G1.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3727128 3727234 . + . mRNA SPBC25D12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC25D12.06" ; systematic_id "SPBC25D12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3727332 3728176 . - . mRNA SPBC13G1.14c ; systematic_id "SPBC13G1.14c" ; colour "7" ; gene "SPBC13G1.14c" ; note "uncertain translation start point" ; obsolete_name "SPBC25D12.07c" ; db_xref "SPD:43/43D09" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0003723; RNA binding
GO:0000184; mRNA catabolism, nonsense-mediated decay" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human Rnps1 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "RNA-binding protein (predicted)" ;
chromosome2 GeneDB CDS 3727332 3727657 . - . mRNA SPBC13G1.14c ; colour "7" ;
chromosome2 GeneDB CDS 3727705 3727810 . - . mRNA SPBC13G1.14c ; colour "7" ;
chromosome2 GeneDB CDS 3727877 3728176 . - . mRNA SPBC13G1.14c ; colour "7" ;
chromosome2 GeneDB misc_feature 3727658 3727669 . - . misc_feature unknown_3205 ; colour "6" ; note "ctaactttgcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3727658 3727704 . - . intron SPBC13G1.14c ; systematic_id "SPBC13G1.14c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3727699 3727704 . - . misc_feature unknown_3206 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3727811 3727829 . - . misc_feature unknown_3207 ; colour "6" ; note "ctaatacgatgcaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3727811 3727876 . - . intron SPBC13G1.14c ; systematic_id "SPBC13G1.14c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3727871 3727876 . - . misc_feature unknown_3208 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3727899 3727969 . + . misc_feature unknown_3209 ; note "nominal overlap with cosmid SPBC25D12 and cosmid SPBC13G1" ;
chromosome2 GeneDB 3'-UTR 3728195 3728251 . - . mRNA SPBC13G1.01c ; ID "SPBC13G1.01c" ; systematic_id "SPBC13G1.01c" ; note "mRNA from SPD253" ;
chromosome2 GeneDB CDS_parts 3728252 3729288 . - . mRNA SPBC13G1.01c ; systematic_id "SPBC13G1.01c" ; colour "7" ; gene "SPBC13G1.01c ||| nam9" ; Alias "nam9" ; db_xref "SPD:15/15G02" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL137C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "nam9" ; product "mitochondrial ribosomal protein subunit S4 (predicted)" ;
chromosome2 GeneDB CDS 3728252 3729199 . - . mRNA SPBC13G1.01c ; colour "7" ;
chromosome2 GeneDB CDS 3729253 3729288 . - . mRNA SPBC13G1.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 3729200 3729214 . - . misc_feature unknown_3210 ; colour "6" ; note "ttaatacatatctag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3729200 3729252 . - . intron SPBC13G1.01c ; systematic_id "SPBC13G1.01c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3729247 3729252 . - . misc_feature unknown_3211 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3729287 3729325 . - . mRNA SPBC13G1.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.01c" ; systematic_id "SPBC13G1.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3729763 3729816 . + . mRNA SPBC13G1.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.02" ; systematic_id "SPBC13G1.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3729817 3731224 . + . mRNA SPBC13G1.02 ; db_xref "SPD:21/21G05" ; systematic_id "SPBC13G1.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004475; mannose-1-phosphate guanylyltransferase activity
GO:0009298; GDP-mannose biosynthetic process" ; gene "SPBC13G1.02" ; product "mannose-1-phosphate guanyltransferase (predicted)" ; EC_number "2.7.7.13" ;
chromosome2 GeneDB CDS 3729817 3729857 . + . mRNA SPBC13G1.02 ; colour "7" ;
chromosome2 GeneDB CDS 3729921 3729960 . + . mRNA SPBC13G1.02 ; colour "7" ;
chromosome2 GeneDB CDS 3730061 3731224 . + . mRNA SPBC13G1.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 3729858 3729863 . + . misc_feature unknown_3212 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3729906 3729920 . + . misc_feature unknown_3213 ; colour "6" ; note "ctaattactttgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3729961 3729966 . + . misc_feature unknown_3214 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3730048 3730060 . + . misc_feature unknown_3215 ; colour "6" ; note "ctaactaaattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3731225 3731389 . + . mRNA SPBC13G1.02 ; ID "SPBC13G1.02" ; systematic_id "SPBC13G1.02" ; note "mRNA from BI542460" ;
chromosome2 GeneDB 3'-UTR 3731410 3731431 . - . mRNA SPBC13G1.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.03c" ; systematic_id "SPBC13G1.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3731432 3732352 . - . mRNA SPBC13G1.03c ; systematic_id "SPBC13G1.03c" ; colour "2" ; gene "SPBC13G1.03c ||| pex14" ; Alias "pex14" ; db_xref "SPD:12/12G11" ; GO "GO:0005778; peroxisomal membrane
GO:0016558; protein import into peroxisome matrix
GO:0006625; protein targeting to peroxisome
GO:0005777; peroxisome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL153W; date=19700101 ||| term=disease associated, peroxisomal defects; date=20070627 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pex14" ; product "peroxisomal docking protein Pex14" ;
chromosome2 GeneDB CDS 3731432 3732019 . - . mRNA SPBC13G1.03c ; colour "2" ;
chromosome2 GeneDB CDS 3732080 3732352 . - . mRNA SPBC13G1.03c ; colour "2" ;
chromosome2 GeneDB misc_feature 3732020 3732038 . - . misc_feature unknown_3216 ; colour "6" ; note "ttaacataattaaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3732074 3732079 . - . misc_feature unknown_3217 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3732351 3732403 . - . mRNA SPBC13G1.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.03c" ; systematic_id "SPBC13G1.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3732806 3733762 . - . mRNA SPBC13G1.04c ; db_xref "SPD:10/10F05" ; systematic_id "SPBC13G1.04c" ; GO "GO:0006281; DNA repair
GO:0006307; DNA dealkylation involved in DNA repair
GO:0003906; DNA-(apurinic or apyrimidic site lyase) activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ALKBH1 ortholog; date=20100909" ; colour "7" ; gene "SPBC13G1.04c" ; product "alkB homolog/2-OG-Fe(II) oxygenase family (predicted)" ;
chromosome2 GeneDB CDS 3732806 3732930 . - . mRNA SPBC13G1.04c ; colour "7" ;
chromosome2 GeneDB CDS 3732994 3733762 . - . mRNA SPBC13G1.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3734492 3734791 . + . mRNA SPBC13G1.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.05" ; systematic_id "SPBC13G1.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3734792 3736904 . + . mRNA SPBC13G1.05 ; db_xref "SPD:27/27H12" ; systematic_id "SPBC13G1.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YER140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0034975; protein folding in the endoplasmic reticulum" ; gene "SPBC13G1.05" ; product "ER protein folding protein (predicted)" ;
chromosome2 GeneDB CDS 3734792 3735902 . + . mRNA SPBC13G1.05 ; colour "7" ;
chromosome2 GeneDB CDS 3735949 3736232 . + . mRNA SPBC13G1.05 ; colour "7" ;
chromosome2 GeneDB CDS 3736288 3736725 . + . mRNA SPBC13G1.05 ; colour "7" ;
chromosome2 GeneDB CDS 3736788 3736904 . + . mRNA SPBC13G1.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 3735903 3735908 . + . misc_feature unknown_3218 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3735933 3735948 . + . misc_feature unknown_3219 ; colour "6" ; note "ctaactttaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3736233 3736238 . + . misc_feature unknown_3220 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3736273 3736287 . + . misc_feature unknown_3221 ; colour "6" ; note "ctaacattggtaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3736726 3736731 . + . misc_feature unknown_3222 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 3736726 3736787 . + . intron SPBC13G1.05 ; systematic_id "SPBC13G1.05" ; note "confirmed by cDNA" ;
chromosome2 GeneDB misc_feature 3736773 3736787 . + . misc_feature unknown_3223 ; colour "6" ; note "ctaactgtatcacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3736905 3736981 . + . mRNA SPBC13G1.05 ; ID "SPBC13G1.05" ; systematic_id "SPBC13G1.05" ; note "mRNA from AU008616" ;
chromosome2 GeneDB CDS_parts 3737080 3737467 . - . mRNA SPBC13G1.06c ; systematic_id "SPBC13G1.06c" ; colour "7" ; gene "isd11 ||| SPBC13G1.06c" ; note "this gene product was previously annotated to the NADH dehydrogenase of the mitochondrial respiratory chain complex I, this mapping was removed due to lack of the remaining 40 subunits found in mammals (PMID:1518044)" ; Alias "isd11" ; db_xref "SPD:02/02H05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER048W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=ACN9 family; date=20100820" ; GO "GO:0005759; mitochondrial matrix
GO:0016226; iron-sulfur cluster assembly" ; primary_name "isd11" ; product "mitochondrial iron sulfur cluster assembly protein Isd11 (predicted)" ;
chromosome2 GeneDB CDS 3737080 3737142 . - . mRNA SPBC13G1.06c ; colour "7" ;
chromosome2 GeneDB CDS 3737222 3737467 . - . mRNA SPBC13G1.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 3737143 3737157 . - . misc_feature unknown_3224 ; colour "6" ; note "ctaattttcttgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3737216 3737221 . - . misc_feature unknown_3225 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3737466 3737520 . - . mRNA SPBC13G1.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.06c" ; systematic_id "SPBC13G1.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3737574 3737656 . + . mRNA SPBC13G1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.07" ; systematic_id "SPBC13G1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3737657 3738727 . + . mRNA SPBC13G1.07 ; db_xref "SPD:43/43G02" ; systematic_id "SPBC13G1.07" ; colour "7" ; GO "GO:0018345; protein amino acid palmitoylation
GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-DHHC type; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC13G1.07" ; product "palmitoyltransferase (predicted)" ;
chromosome2 GeneDB CDS 3737657 3738727 . + . mRNA SPBC13G1.07 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3738728 3738785 . + . mRNA SPBC13G1.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.07" ; systematic_id "SPBC13G1.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3738975 3740933 . - . mRNA SPBC13G1.08c ; systematic_id "SPBC13G1.08c" ; colour "2" ; gene "ash2 ||| SPBC13G1.08c" ; Alias "ash2" ; db_xref "SPD:27/27A10" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0016571; histone methylation
GO:0048189; Lid2 complex
GO:0000790; nuclear chromatin
GO:0051568; histone H3-K4 methylation
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=orthologous to S. cerevisiae YLR015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ash2" ; product "Ash2-trithorax family protein" ;
chromosome2 GeneDB CDS 3738975 3740933 . - . mRNA SPBC13G1.08c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3740932 3741365 . - . mRNA SPBC13G1.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.08c" ; systematic_id "SPBC13G1.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3741441 3741776 . - . mRNA SPBC13G1.15c ; db_xref "SPD:51/51G09" ; systematic_id "SPBC13G1.15c" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC13G1.15c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3741441 3741776 . - . mRNA SPBC13G1.15c ; colour "8" ;
chromosome2 GeneDB 5'-UTR 3742413 3742425 . + . mRNA SPBC13G1.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.09" ; systematic_id "SPBC13G1.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3742426 3743818 . + . mRNA SPBC13G1.09 ; db_xref "SPD:21/21E10" ; systematic_id "SPBC13G1.09" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing
GO:0000447; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR247C; date=19700101 ||| term=human BSYL ortholog; date=20100902 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; gene "SPBC13G1.09" ; product "bystin family U3 and U14 snoRNA associated protein (predicted)" ;
chromosome2 GeneDB CDS 3742426 3743352 . + . mRNA SPBC13G1.09 ; colour "7" ;
chromosome2 GeneDB CDS 3743396 3743818 . + . mRNA SPBC13G1.09 ; colour "7" ;
chromosome2 GeneDB misc_feature 3743353 3743358 . + . misc_feature unknown_3226 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3743382 3743395 . + . misc_feature unknown_3227 ; colour "6" ; note "ttaacctcttatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3743819 3744006 . + . mRNA SPBC13G1.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.09" ; systematic_id "SPBC13G1.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3744065 3744067 . - . mRNA SPBC13G1.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.10c" ; systematic_id "SPBC13G1.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3744068 3749875 . - . mRNA SPBC13G1.10c ; systematic_id "SPBC13G1.10c" ; colour "7" ; gene "SPBC13G1.10c ||| mug81" ; Alias "mug81" ; db_xref "SPD:48/48H09" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005737; cytoplasm
GO:0006417; regulation of translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YGR271W; date=19700101 ||| term=human ASCC3 ortholog; date=20080925 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mug81" ; product "ATP-dependent RNA helicase Slh1 (predicted)" ;
chromosome2 GeneDB CDS 3744068 3749875 . - . mRNA SPBC13G1.10c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3749874 3750000 . - . mRNA SPBC13G1.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.10c" ; systematic_id "SPBC13G1.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3750110 3750168 . + . mRNA SPBC13G1.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.11" ; systematic_id "SPBC13G1.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3750169 3750810 . + . mRNA SPBC13G1.11 ; systematic_id "SPBC13G1.11" ; colour "7" ; gene "ykt6 ||| SPBC13G1.11" ; Alias "ykt6" ; db_xref "SPD:07/07D03" ; GO "GO:0016192; vesicle-mediated transport
GO:0005484; SNAP receptor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YKL196C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ykt6" ; product "SNARE Ykt6 (predicted)" ;
chromosome2 GeneDB CDS 3750169 3750272 . + . mRNA SPBC13G1.11 ; colour "7" ;
chromosome2 GeneDB CDS 3750321 3750810 . + . mRNA SPBC13G1.11 ; colour "7" ;
chromosome2 GeneDB misc_feature 3750273 3750278 . + . misc_feature unknown_3228 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3750305 3750320 . + . misc_feature unknown_3229 ; colour "6" ; note "ttaacaaatatttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3750811 3751266 . + . mRNA SPBC13G1.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.11" ; systematic_id "SPBC13G1.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3751363 3751721 . - . misc_RNA SPNCRNA.543 ; db_xref "PMID:18488015" ; synonym "SPNGAF69" ; systematic_id "SPNCRNA.543" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 62 amino acids" ;
chromosome2 GeneDB 5'-UTR 3752477 3752587 . + . mRNA SPBC13G1.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.12" ; systematic_id "SPBC13G1.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3752588 3753394 . + . mRNA SPBC13G1.12 ; systematic_id "SPBC13G1.12" ; colour "7" ; gene "did2 ||| SPBC13G1.12" ; Alias "did2" ; db_xref "SPD:10/10C05" ; GO "GO:0000815; ESCRT III complex
GO:0005770; late endosome
GO:0006623; protein targeting to vacuole
GO:0043162; ubiquitin-dependent protein catabolism via the multivesicular body pathway
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR035W-A; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "did2" ; product "vacuolar sorting protein Did2 (predicted)" ;
chromosome2 GeneDB CDS 3752588 3752635 . + . mRNA SPBC13G1.12 ; colour "7" ;
chromosome2 GeneDB CDS 3752757 3752903 . + . mRNA SPBC13G1.12 ; colour "7" ;
chromosome2 GeneDB CDS 3752946 3753014 . + . mRNA SPBC13G1.12 ; colour "7" ;
chromosome2 GeneDB CDS 3753070 3753141 . + . mRNA SPBC13G1.12 ; colour "7" ;
chromosome2 GeneDB CDS 3753194 3753394 . + . mRNA SPBC13G1.12 ; colour "7" ;
chromosome2 GeneDB misc_feature 3752636 3752641 . + . misc_feature unknown_3230 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3752739 3752756 . + . misc_feature unknown_3231 ; colour "6" ; note "ctaactgttattacctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3752904 3752909 . + . misc_feature unknown_3232 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3752934 3752945 . + . misc_feature unknown_3233 ; colour "6" ; note "ttgactatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3753015 3753020 . + . misc_feature unknown_3234 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3753059 3753069 . + . misc_feature unknown_3235 ; colour "6" ; note "ctgacccacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3753142 3753147 . + . misc_feature unknown_3236 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3753179 3753193 . + . misc_feature unknown_3237 ; colour "6" ; note "ctaacactatataag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3753395 3753470 . + . mRNA SPBC13G1.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.12" ; systematic_id "SPBC13G1.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3753907 3754069 . + . mRNA SPBC13G1.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.13" ; systematic_id "SPBC13G1.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3754070 3755458 . + . mRNA SPBC13G1.13 ; systematic_id "SPBC13G1.13" ; colour "2" ; gene "tfb2 ||| SPBC13G1.13 ||| SPBC31F10.01" ; Alias "tfb2" ; db_xref "SPD:44/44D10" ; synonym "SPBC31F10.01" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0000112; nucleotide-excision repair factor 3 complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000717; nucleotide-excision repair, DNA duplex unwinding
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL122C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tfb2" ; product "transcription factor TFIIH complex subunit Tfb2" ;
chromosome2 GeneDB CDS 3754070 3754392 . + . mRNA SPBC13G1.13 ; colour "2" ;
chromosome2 GeneDB CDS 3754438 3755458 . + . mRNA SPBC13G1.13 ; colour "2" ;
chromosome2 GeneDB misc_feature 3754393 3754398 . + . misc_feature unknown_3238 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3754421 3754437 . + . misc_feature unknown_3239 ; colour "6" ; note "ctaattaagctttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3754745 3755898 . + . misc_feature unknown_3240 ; note "nominal overlap with cosmid SPBC31F10 and cosmid SPBC13G1" ;
chromosome2 GeneDB 3'-UTR 3755459 3755560 . + . mRNA SPBC13G1.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC13G1.13" ; systematic_id "SPBC13G1.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3755887 3755932 . + . mRNA SPBC31F10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.02" ; systematic_id "SPBC31F10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3755933 3756418 . + . mRNA SPBC31F10.02 ; db_xref "SPD:04/04E10" ; systematic_id "SPBC31F10.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human ACOT13 ortholog; date=19700101 ||| term=protein sequence feature, destruction box; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016291; acyl-CoA thioesterase activity
GO:0006631; fatty acid metabolic process
GO:0006637; acyl-CoA metabolic process" ; gene "SPBC31F10.02" ; product "acyl-CoA thioesterase (predicted)" ; EC_number "3.1.2.-" ;
chromosome2 GeneDB CDS 3755933 3756418 . + . mRNA SPBC31F10.02 ; colour "7" ;
chromosome2 GeneDB CDS_parts 3756657 3757268 . + . mRNA SPBC31F10.03 ; db_xref "SPD:06/06H03" ; systematic_id "SPBC31F10.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER163C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CHAC1 and CHAC2 ortholog; date=20100727" ; colour "10" ; gene "SPBC31F10.03" ; product "ChaC-like protein, predicted cation transport regulator" ;
chromosome2 GeneDB CDS 3756657 3757268 . + . mRNA SPBC31F10.03 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 3757481 3757530 . - . mRNA SPBC31F10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.04c" ; systematic_id "SPBC31F10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3757531 3759284 . - . mRNA SPBC31F10.04c ; systematic_id "SPBC31F10.04c" ; colour "2" ; gene "srb4 ||| SPBC31F10.04c ||| med17" ; Alias "srb4" ; db_xref "SPD:36/36A12" ; synonym "med17" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10625684; date=19700101 ||| term=orthologous to S. cerevisiae YER022W; date=19700101 ||| term=phenotype, septation defects; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=disease associated, infantile cerebral and cerebellar atrophy; date=20101019 ||| term=disease associated, neurological disorders; date=20101019" ; primary_name "srb4" ; product "mediator complex subunit Srb4" ;
chromosome2 GeneDB CDS 3757531 3758830 . - . mRNA SPBC31F10.04c ; colour "2" ;
chromosome2 GeneDB CDS 3758892 3759140 . - . mRNA SPBC31F10.04c ; colour "2" ;
chromosome2 GeneDB CDS 3759196 3759284 . - . mRNA SPBC31F10.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 3758831 3758847 . - . misc_feature unknown_3241 ; colour "6" ; note "ttaaccatcaatattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3758886 3758891 . - . misc_feature unknown_3242 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3759141 3759156 . - . misc_feature unknown_3243 ; colour "6" ; note "ctaacaattactctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3759190 3759195 . - . misc_feature unknown_3244 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3759283 3759352 . - . mRNA SPBC31F10.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.04c" ; systematic_id "SPBC31F10.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3759893 3760616 . + . mRNA SPBC31F10.05 ; systematic_id "SPBC31F10.05" ; colour "8" ; gene "SPBC31F10.05 ||| mug37" ; db_xref "SPD:08/08F03" ; Alias "mug37" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug37" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3759893 3760280 . + . mRNA SPBC31F10.05 ; colour "8" ;
chromosome2 GeneDB CDS 3760351 3760616 . + . mRNA SPBC31F10.05 ; colour "8" ;
chromosome2 GeneDB misc_feature 3760281 3760286 . + . misc_feature unknown_3245 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3760339 3760350 . + . misc_feature unknown_3246 ; colour "6" ; note "ctaacgttatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3760615 3760950 . - . mRNA SPBC31F10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.06c" ; systematic_id "SPBC31F10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3760951 3761829 . - . mRNA SPBC31F10.06c ; systematic_id "SPBC31F10.06c" ; colour "2" ; gene "sar1 ||| SPBC31F10.06c" ; Alias "sar1" ; db_xref "SPD:40/40B05" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0006998; nuclear membrane organization and biogenesis
GO:0007264; small GTPase mediated signal transduction
GO:0030127; COPII vesicle coat" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL218W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sar1" ; product "ADP-ribosylation factor Sar1" ;
chromosome2 GeneDB CDS 3760951 3761294 . - . mRNA SPBC31F10.06c ; colour "2" ;
chromosome2 GeneDB CDS 3761552 3761657 . - . mRNA SPBC31F10.06c ; colour "2" ;
chromosome2 GeneDB CDS 3761707 3761829 . - . mRNA SPBC31F10.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 3761295 3761309 . - . misc_feature unknown_3247 ; colour "6" ; note "ctaattttcttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3761546 3761551 . - . misc_feature unknown_3248 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3761658 3761669 . - . misc_feature unknown_3249 ; colour "6" ; note "ctaattatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3761701 3761706 . - . misc_feature unknown_3250 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3761828 3761880 . - . mRNA SPBC31F10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.06c" ; systematic_id "SPBC31F10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3762925 3763169 . + . mRNA SPBC31F10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.07" ; systematic_id "SPBC31F10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3763170 3764084 . + . mRNA SPBC31F10.07 ; systematic_id "SPBC31F10.07" ; colour "7" ; gene "SPBC31F10.07" ; Alias "lsb5" ; db_xref "SPD:12/12F12" ; GO "GO:0005938; cell cortex
GO:0007015; actin filament organization
GO:0006897; endocytosis
GO:0030479; actin cortical patch" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL034W; date=19700101 ||| term=ENTH/VHS domain protein; date=20080505 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=GAT domain; date=20100908" ; primary_name "lsb5" ; product "cortical component Lsb5 (predicted)" ;
chromosome2 GeneDB CDS 3763170 3764084 . + . mRNA SPBC31F10.07 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3764085 3764414 . + . mRNA SPBC31F10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.07" ; systematic_id "SPBC31F10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3764820 3765709 . + . mRNA SPBC31F10.08 ; systematic_id "SPBC31F10.08" ; colour "2" ; gene "mde2 ||| SPBC31F10.08" ; Alias "mde2" ; db_xref "SPD:42/42E09" ; GO "GO:0042138; meiotic DNA double-strand break formation involved in reciprocal meiotic recombiantion
GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=warning, gene structure updated; cv=warning; date=20080718 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, Mei4- Dependent Expression; cv=name_description; date=20091005" ; primary_name "mde2" ; product "Mde2 protein" ;
chromosome2 GeneDB CDS 3764820 3765437 . + . mRNA SPBC31F10.08 ; colour "2" ;
chromosome2 GeneDB CDS 3765491 3765709 . + . mRNA SPBC31F10.08 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3764905 3765846 . - . mRNA SPBC31F10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.09c" ; systematic_id "SPBC31F10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3765847 3766263 . - . mRNA SPBC31F10.09c ; systematic_id "SPBC31F10.09c" ; colour "2" ; gene "nut2 ||| med10 ||| SPBC31F10.09c" ; Alias "nut2" ; db_xref "SPD:03/03C11" ; synonym "med10" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0006366; transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nut2" ; product "mediator complex subunit Med10" ;
chromosome2 GeneDB CDS 3765847 3766263 . - . mRNA SPBC31F10.09c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3766262 3766394 . - . mRNA SPBC31F10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.09c" ; systematic_id "SPBC31F10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3766835 3767252 . - . mRNA SPBC31F10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.10c" ; systematic_id "SPBC31F10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3767253 3768977 . - . mRNA SPBC31F10.10c ; db_xref "SPD:35/35F08" ; systematic_id "SPBC31F10.10c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-MYND type; date=19700101 ||| term=orthologous to S. cerevisiae YMR100W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0007127; meiosis I
GO:0007126; meiosis
GO:0016567; protein ubiquitination" ; gene "SPBC31F10.10c" ; product "zf-MYND type zinc finger protein" ;
chromosome2 GeneDB CDS 3767253 3768977 . - . mRNA SPBC31F10.10c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3768976 3769965 . - . mRNA SPBC31F10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.10c" ; systematic_id "SPBC31F10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3770902 3771032 . - . mRNA SPBC31F10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.11c" ; systematic_id "SPBC31F10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3771033 3773057 . - . mRNA SPBC31F10.11c ; systematic_id "SPBC31F10.11c" ; colour "2" ; gene "cwf4 ||| syf3 ||| SPBC31F10.11c" ; Alias "cwf4" ; db_xref "SPD:46/46C09" ; synonym "syf3" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR117C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf4" ; product "complexed with Cdc5 protein Cwf4" ;
chromosome2 GeneDB CDS 3771033 3773057 . - . mRNA SPBC31F10.11c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3773056 3773160 . - . mRNA SPBC31F10.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.11c" ; systematic_id "SPBC31F10.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3773308 3774212 . + . mRNA SPBC31F10.12 ; db_xref "SPD:11/11E02" ; systematic_id "SPBC31F10.12" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0006412; translation
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PUA domain; date=19700101 ||| term=orthologous to S. cerevisiae YER007C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC31F10.12" ; product "RNA-binding protein Tma20 (predicted)" ;
chromosome2 GeneDB CDS 3773308 3773318 . + . mRNA SPBC31F10.12 ; colour "7" ;
chromosome2 GeneDB CDS 3773373 3773525 . + . mRNA SPBC31F10.12 ; colour "7" ;
chromosome2 GeneDB CDS 3773581 3773678 . + . mRNA SPBC31F10.12 ; colour "7" ;
chromosome2 GeneDB CDS 3773795 3773999 . + . mRNA SPBC31F10.12 ; colour "7" ;
chromosome2 GeneDB CDS 3774059 3774116 . + . mRNA SPBC31F10.12 ; colour "7" ;
chromosome2 GeneDB CDS 3774192 3774212 . + . mRNA SPBC31F10.12 ; colour "7" ;
chromosome2 GeneDB misc_feature 3773526 3773531 . + . misc_feature unknown_3251 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3773566 3773580 . + . misc_feature unknown_3252 ; note "splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3773619 3773632 . + . misc_feature unknown_3253 ; colour "6" ; note "ttatccttttccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3773683 3773688 . + . misc_feature unknown_3254 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3773782 3773794 . + . misc_feature unknown_3255 ; colour "6" ; note "ctaatacgcctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3774000 3774005 . + . misc_feature unknown_3256 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3774037 3774058 . + . misc_feature unknown_3257 ; colour "6" ; note "ctaatacgcctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3774117 3774122 . + . misc_feature unknown_3258 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3774179 3774191 . + . misc_feature unknown_3259 ; colour "6" ; note "ctaatattcacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3774312 3774356 . - . mRNA SPBC31F10.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.13c" ; systematic_id "SPBC31F10.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3774357 3777350 . - . mRNA SPBC31F10.13c ; systematic_id "SPBC31F10.13c" ; colour "2" ; gene "hip1 ||| SPBC31F10.13c" ; Alias "hip1" ; db_xref "SPD:47/47F10" ; synonym "hir1" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003714; transcription corepressor activity
GO:0006336; DNA replication-independent nucleosome assembly
GO:0006995; cellular response to nitrogen starvation
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0000070; mitotic sister chromatid segregation
GO:0007070; negative regulation of transcription from RNA polymerase II promoter, mitotic
GO:0007346; regulation of progression through mitotic cell cycle" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19620282; date=20091123 ||| term=name description, HIRA Interacting Protein; cv=name_description; date=20100126 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|low_penetrance; db_xref=PMID:15121850; date=20100923" ; primary_name "hip1" ; product "hira protein, histone chaperone Hip1" ;
chromosome2 GeneDB CDS 3774357 3776749 . - . mRNA SPBC31F10.13c ; colour "2" ;
chromosome2 GeneDB CDS 3776790 3776881 . - . mRNA SPBC31F10.13c ; colour "2" ;
chromosome2 GeneDB CDS 3776923 3777121 . - . mRNA SPBC31F10.13c ; colour "2" ;
chromosome2 GeneDB CDS 3777178 3777255 . - . mRNA SPBC31F10.13c ; colour "2" ;
chromosome2 GeneDB CDS 3777314 3777350 . - . mRNA SPBC31F10.13c ; colour "2" ;
chromosome2 GeneDB misc_feature 3776750 3776762 . - . misc_feature unknown_3260 ; colour "6" ; note "ctaatttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3776784 3776789 . - . misc_feature unknown_3261 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3776882 3776897 . - . misc_feature unknown_3262 ; colour "6" ; note "ctaactattaacacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3776917 3776922 . - . misc_feature unknown_3263 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3777122 3777135 . - . misc_feature unknown_3264 ; colour "6" ; note "ctaactgcccgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3777172 3777177 . - . misc_feature unknown_3265 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3777256 3777268 . - . misc_feature unknown_3266 ; colour "6" ; note "ctaattcagctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3777308 3777313 . - . misc_feature unknown_3267 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3777349 3777393 . - . mRNA SPBC31F10.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.13c" ; systematic_id "SPBC31F10.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3777723 3777777 . - . mRNA SPBC31F10.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.14c" ; systematic_id "SPBC31F10.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3777778 3782670 . - . mRNA SPBC31F10.14c ; systematic_id "SPBC31F10.14c" ; colour "2" ; gene "hip3 ||| SPBC31F10.14c ||| hir3" ; Alias "hip3" ; db_xref "SPD:31/31A06" ; synonym "hir3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YJR140C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, HIRA Interacting Protein; cv=name_description; date=20100126 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|low_penetrance; db_xref=PMID:16428807; date=20100923" ; GO "GO:0000417; HIR complex
GO:0005634; nucleus
GO:0003714; transcription corepressor activity
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0006334; nucleosome assembly
GO:0007346; regulation of progression through mitotic cell cycle
GO:0007070; negative regulation of transcription from RNA polymerase II promoter, mitotic" ; primary_name "hip3" ; product "HIRA interacting protein Hip3" ;
chromosome2 GeneDB CDS 3777778 3782670 . - . mRNA SPBC31F10.14c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3782669 3783390 . - . mRNA SPBC31F10.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.14c" ; systematic_id "SPBC31F10.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3784047 3784186 . - . mRNA SPBC31F10.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.15c" ; systematic_id "SPBC31F10.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3784187 3784462 . - . mRNA SPBC31F10.15c ; systematic_id "SPBC31F10.15c" ; colour "7" ; gene "atp15 ||| SPBC31F10.15c" ; Alias "atp15" ; db_xref "SPD:01/01C06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL271W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005756; proton-transporting ATP synthase, central stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0042776; mitochondrial ATP synthesis coupled proton transport" ; primary_name "atp15" ; product "F0-ATPase epsilon subunit (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB CDS 3784187 3784361 . - . mRNA SPBC31F10.15c ; colour "7" ;
chromosome2 GeneDB CDS 3784434 3784462 . - . mRNA SPBC31F10.15c ; colour "7" ;
chromosome2 GeneDB misc_feature 3784362 3784382 . - . misc_feature unknown_3268 ; colour "6" ; note "ctaatgaatgaatatttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3784428 3784433 . - . misc_feature unknown_3269 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3784461 3784488 . - . mRNA SPBC31F10.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.15c" ; systematic_id "SPBC31F10.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3785808 3785847 . + . mRNA SPBC31F10.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.16" ; systematic_id "SPBC31F10.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3785848 3788046 . + . mRNA SPBC31F10.16 ; db_xref "SPD:37/37H07" ; systematic_id "SPBC31F10.16" ; colour "7" ; GO "GO:0030136; clathrin-coated vesicle
GO:0030140; trans-Golgi network transport vesicle
GO:0006893; Golgi to plasma membrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR237W and YJL099W and YOR299W and YKR027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC31F10.16" ; product "ChAPs family protein (predicted)" ;
chromosome2 GeneDB CDS 3785848 3785879 . + . mRNA SPBC31F10.16 ; colour "7" ;
chromosome2 GeneDB CDS 3785929 3786055 . + . mRNA SPBC31F10.16 ; colour "7" ;
chromosome2 GeneDB CDS 3786111 3787820 . + . mRNA SPBC31F10.16 ; colour "7" ;
chromosome2 GeneDB CDS 3787876 3788046 . + . mRNA SPBC31F10.16 ; colour "7" ;
chromosome2 GeneDB misc_feature 3785880 3785885 . + . misc_feature unknown_3270 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3785912 3785928 . + . misc_feature unknown_3271 ; colour "6" ; note "ctaaacaatgacgatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3786056 3786061 . + . misc_feature unknown_3272 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3786091 3786110 . + . misc_feature unknown_3273 ; colour "6" ; note "ttaatgatgttggagattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3787821 3787826 . + . misc_feature unknown_3274 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 3787840 3788316 . - . mRNA SPBC31F10.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.17c" ; systematic_id "SPBC31F10.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3787861 3787875 . + . misc_feature unknown_3275 ; colour "6" ; note "ctaacataatcttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3788047 3788230 . + . mRNA SPBC31F10.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC31F10.16" ; systematic_id "SPBC31F10.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3788317 3788799 . - . mRNA SPBC31F10.17c ; db_xref "SPD:04/04E03" ; systematic_id "SPBC31F10.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC31F10.17c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3788317 3788649 . - . mRNA SPBC31F10.17c ; colour "8" ;
chromosome2 GeneDB CDS 3788725 3788799 . - . mRNA SPBC31F10.17c ; colour "8" ;
chromosome2 GeneDB misc_feature 3788650 3788664 . - . misc_feature unknown_3276 ; colour "6" ; note "ctaattgctatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3788719 3788724 . - . misc_feature unknown_3277 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 3789105 3789385 . - . mRNA SPBC21C3.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.01c" ; systematic_id "SPBC21C3.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3789386 3798703 . - . mRNA SPBC21C3.01c ; systematic_id "SPBC21C3.01c" ; colour "7" ; gene "vps13a ||| SPBC31F10.18c ||| SPBC21C3.01c ||| vps1301" ; Alias "vps13a" ; db_xref "SPD:34/34D05" ; synonym "vps1301 ||| SPBC31F10.18c" ; GO "GO:0045324; late endosome to vacuole transport
GO:0045053; protein retention in Golgi
GO:0005768; endosome
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, chorea- acanthocytosis; date=19700101 ||| term=orthologous to S. cerevisiae YLL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps13a" ; product "chorein homolog (predicted)" ;
chromosome2 GeneDB CDS 3789386 3798466 . - . mRNA SPBC21C3.01c ; colour "7" ;
chromosome2 GeneDB CDS 3798518 3798630 . - . mRNA SPBC21C3.01c ; colour "7" ;
chromosome2 GeneDB CDS 3798682 3798703 . - . mRNA SPBC21C3.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 3791093 3791188 . + . misc_feature unknown_3278 ; note "nominal overlap with cosmid SPBC31F10 and cosmid SPBC21C3" ;
chromosome2 GeneDB misc_feature 3798467 3798484 . - . misc_feature unknown_3279 ; colour "6" ; note "ctgacaattgttttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3798512 3798517 . - . misc_feature unknown_3280 ; colour "6" ; note "gtaact, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3798631 3798646 . - . misc_feature unknown_3281 ; colour "6" ; note "ttaataaaataattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3798676 3798681 . - . misc_feature unknown_3282 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3798702 3798732 . - . mRNA SPBC21C3.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.01c" ; systematic_id "SPBC21C3.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3799447 3799530 . - . mRNA SPBC21C3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.02c" ; systematic_id "SPBC21C3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3799531 3801006 . - . mRNA SPBC21C3.02c ; systematic_id "SPBC21C3.02c" ; colour "2" ; gene "dep1 ||| SPBC21C3.02c" ; Alias "dep1" ; db_xref "SPD:23/23G11" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0006355; regulation of transcription, DNA- dependent
GO:0016575; histone deacetylation
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dep1" ; product "Sds3-like family protein Dep1" ;
chromosome2 GeneDB CDS 3799531 3801006 . - . mRNA SPBC21C3.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3801007 3801120 . - . mRNA SPBC21C3.02c ; ID "SPBC21C3.02c" ; systematic_id "SPBC21C3.02c" ; note "mRNA from AU013317" ;
chromosome2 GeneDB 5'-UTR 3801978 3802250 . + . mRNA SPBC21C3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.03" ; systematic_id "SPBC21C3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3802251 3804330 . + . mRNA SPBC21C3.03 ; db_xref "SPD:46/46E06" ; systematic_id "SPBC21C3.03" ; colour "10" ; GO "GO:0031966; mitochondrial membrane
GO:0005739; mitochondrion
GO:0016301; kinase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL109C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ADCK ortholog; date=20100727" ; gene "SPBC21C3.03" ; product "ABC1 kinase family protein" ;
chromosome2 GeneDB CDS 3802251 3802829 . + . mRNA SPBC21C3.03 ; colour "10" ;
chromosome2 GeneDB CDS 3802885 3804330 . + . mRNA SPBC21C3.03 ; colour "10" ;
chromosome2 GeneDB misc_feature 3802830 3802835 . + . misc_feature unknown_3283 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3802860 3802884 . + . misc_feature unknown_3284 ; colour "6" ; note "ctaacattatttttttattttgcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3803461 3804574 . - . mRNA SPBC21C3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.04c" ; systematic_id "SPBC21C3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3804331 3804400 . + . mRNA SPBC21C3.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.03" ; systematic_id "SPBC21C3.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3804575 3804901 . - . mRNA SPBC21C3.04c ; db_xref "SPD:01/01G09" ; systematic_id "SPBC21C3.04c" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR115W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC21C3.04c" ; product "mitochondrial ribosomal protein subunit L34 (predicted)" ;
chromosome2 GeneDB CDS 3804575 3804901 . - . mRNA SPBC21C3.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3804900 3805005 . - . mRNA SPBC21C3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.04c" ; systematic_id "SPBC21C3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3805775 3805801 . + . mRNA SPBC21C3.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.05" ; systematic_id "SPBC21C3.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3805802 3806834 . + . mRNA SPBC21C3.05 ; systematic_id "SPBC21C3.05" ; colour "2" ; gene "sap62 ||| SPBC21C3.05" ; Alias "sap62" ; db_xref "SPD:15/15F06" ; GO "GO:0003723; RNA binding
GO:0000245; spliceosome assembly
GO:0005686; snRNP U2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-ZNF_U1; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YDL043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sap62" ; product "zinc finger protein Sap62" ;
chromosome2 GeneDB CDS 3805802 3805927 . + . mRNA SPBC21C3.05 ; colour "2" ;
chromosome2 GeneDB CDS 3806244 3806685 . + . mRNA SPBC21C3.05 ; colour "2" ;
chromosome2 GeneDB CDS 3806749 3806834 . + . mRNA SPBC21C3.05 ; colour "2" ;
chromosome2 GeneDB misc_feature 3805928 3805933 . + . misc_feature unknown_3285 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3806230 3806243 . + . misc_feature unknown_3286 ; colour "6" ; note "ctaatctcttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3806686 3806691 . + . misc_feature unknown_3287 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3806737 3806748 . + . misc_feature unknown_3288 ; colour "6" ; note "ctcacgaaatag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 3807090 3807458 . + . mRNA SPBC21C3.06 ; db_xref "SPD:02/02E11" ; systematic_id "SPBC21C3.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC21C3.06" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3807090 3807458 . + . mRNA SPBC21C3.06 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 3807459 3807918 . + . mRNA SPBC21C3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.06" ; systematic_id "SPBC21C3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3807714 3808795 . - . mRNA SPBC21C3.07c ; db_xref "SPD:16/16H01" ; systematic_id "SPBC21C3.07c" ; colour "10" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR239W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC21C3.07c" ; product "methyltransferase (predicted)" ;
chromosome2 GeneDB CDS 3807714 3807783 . - . mRNA SPBC21C3.07c ; colour "10" ;
chromosome2 GeneDB CDS 3807831 3807891 . - . mRNA SPBC21C3.07c ; colour "10" ;
chromosome2 GeneDB CDS 3807946 3808607 . - . mRNA SPBC21C3.07c ; colour "10" ;
chromosome2 GeneDB CDS 3808665 3808795 . - . mRNA SPBC21C3.07c ; colour "10" ;
chromosome2 GeneDB misc_feature 3807784 3807799 . - . misc_feature unknown_3289 ; colour "6" ; note "ctaatctccatactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3808608 3808619 . - . misc_feature unknown_3290 ; colour "6" ; note "ttaattgttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3808659 3808664 . - . misc_feature unknown_3291 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 3809059 3809410 . - . mRNA SPBC21C3.08c ; ID "SPBC21C3.08c" ; systematic_id "SPBC21C3.08c" ; note "mRNA from AU009216" ;
chromosome2 GeneDB CDS_parts 3809411 3810727 . - . mRNA SPBC21C3.08c ; systematic_id "SPBC21C3.08c" ; colour "2" ; db_xref "SPD:22/22H11" ; Alias "car2" ; GO "GO:0004587; ornithine-oxo-acid transaminase activity
GO:0006527; arginine catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hyperornithinemia; date=20060920 ||| term=disease associated, gyrate atrophy of choroid and retina; date=20091016 ||| term=orthologous to S. cerevisiae YLR438W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, CAtabolism of aRginine, after cerevisiae; cv=name_description; date=20091016 ||| term=experimental tools, deletion solves arginine-conversion problem; db_xref=PMID:20460254; date=20100601" ; primary_name "car2" ; product "ornithine transaminase Car2" ; EC_number "2.6.1.13" ;
chromosome2 GeneDB CDS 3809411 3810727 . - . mRNA SPBC21C3.08c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3810728 3810816 . - . mRNA SPBC21C3.08c ; ID "SPBC21C3.08c" ; systematic_id "SPBC21C3.08c" ; note "mRNA from AU012405" ;
chromosome2 GeneDB CDS_parts 3811374 3812188 . - . mRNA SPBC21C3.09c ; db_xref "SPD:10/10E01" ; systematic_id "SPBC21C3.09c" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0006572; tyrosine catabolism
GO:0016787; hydrolase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL168C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC21C3.09c" ; product "fumarylacetoacetate hydrolase family protein (predicted)" ;
chromosome2 GeneDB CDS 3811374 3811992 . - . mRNA SPBC21C3.09c ; colour "7" ;
chromosome2 GeneDB CDS 3812142 3812188 . - . mRNA SPBC21C3.09c ; colour "7" ;
chromosome2 GeneDB misc_feature 3811993 3812008 . - . misc_feature unknown_3292 ; colour "6" ; note "ctaattttatatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3812136 3812141 . - . misc_feature unknown_3293 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3812187 3812373 . - . mRNA SPBC21C3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.09c" ; systematic_id "SPBC21C3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3812462 3813268 . - . mRNA SPBC21C3.10c ; db_xref "SPD:10/10C06" ; systematic_id "SPBC21C3.10c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR153W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0008703; 5-amino-6-(5- phosphoribosylamino)uracil reductase activity
GO:0009231; riboflavin biosynthesis" ; gene "SPBC21C3.10c" ; product "5-amino-6-(5-phosphoribosylamino) uracil reductase (predicted)" ; EC_number "1.1.1.193" ;
chromosome2 GeneDB CDS 3812462 3813268 . - . mRNA SPBC21C3.10c ; colour "7" ;
chromosome2 GeneDB tRNA 3814134 3814216 . + . tRNA SPBTRNALYS.09 ; systematic_id "SPBTRNALYS.09" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033417; CTT codon-amino acid adaptor activity" ; product "tRNA Lysine" ; note "tRNA Lys anticodon CTT" ;
chromosome2 GeneDB intron 3814173 3814180 . + . intron unknown_3294 ; note "intron tRNA Lys anticodon CTT" ;
chromosome2 GeneDB tRNA 3814558 3814641 . + . tRNA SPBTRNATYR.04 ; systematic_id "SPBTRNATYR.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033451; GTA codon-amino acid adaptor activity" ; gene "SPBTRNATYR.04" ; product "tRNA Tyrosine" ; note "tRNA Tyr anticodon GTA" ;
chromosome2 GeneDB intron 3814596 3814605 . + . intron unknown_3295 ; note "intron tRNA Tyr anticodon GTA" ;
chromosome2 GeneDB 5'-UTR 3815507 3815524 . + . mRNA SPBC21C3.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.11" ; systematic_id "SPBC21C3.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3815525 3816802 . + . mRNA SPBC21C3.11 ; systematic_id "SPBC21C3.11" ; colour "7" ; gene "ubx4 ||| SPBC21C3.11" ; note "note PSI Blast shows conserved N-terminal region, needs Pfam submission" ; Alias "ubx4" ; db_xref "SPD:20/20E01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR067C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Metazoa; date=20100805 ||| term=species distribution, conserved in Vertebrates; date=20100805 ||| term=species distribution, conserved in Eukaryotes only; date=20100805 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human ASPSCR1 ortholog; date=20100217" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0006511; ubiquitin-dependent protein catabolism" ; primary_name "ubx4" ; product "UBX domain protein Ubx4 (predicted)" ;
chromosome2 GeneDB CDS 3815525 3816802 . + . mRNA SPBC21C3.11 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3816803 3816882 . + . mRNA SPBC21C3.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.11" ; systematic_id "SPBC21C3.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3817041 3817415 . - . mRNA SPBC21C3.12c ; db_xref "SPD:02/02F12" ; systematic_id "SPBC21C3.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=thioredoxin family; date=20071202 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TXNL5 ortholog; date=20100226" ; colour "10" ; gene "SPBC21C3.12c" ; product "DUF953 family protein" ;
chromosome2 GeneDB CDS 3817041 3817415 . - . mRNA SPBC21C3.12c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3817414 3817542 . - . mRNA SPBC21C3.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.12c" ; systematic_id "SPBC21C3.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3818298 3818888 . + . mRNA SPBC21C3.13 ; systematic_id "SPBC21C3.13" ; colour "7" ; gene "rps1901 ||| rps19-1 ||| SPBC21C3.13" ; Alias "rps1901" ; db_xref "SPD:31/31F02" ; synonym "rps19-1" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL121C and YNL302C; date=19700101 ||| term=disease associated, Diamond Blackfan Anemia; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1901" ; product "40S ribosomal protein S19 (predicted)" ;
chromosome2 GeneDB CDS 3818298 3818373 . + . mRNA SPBC21C3.13 ; colour "7" ;
chromosome2 GeneDB CDS 3818530 3818888 . + . mRNA SPBC21C3.13 ; colour "7" ;
chromosome2 GeneDB misc_feature 3818374 3818379 . + . misc_feature unknown_3296 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 3818374 3818529 . + . intron SPBC21C3.13 ; systematic_id "SPBC21C3.13" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3818514 3818529 . + . misc_feature unknown_3297 ; colour "6" ; note "ctaatacaatctttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3818889 3818974 . + . mRNA SPBC21C3.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.13" ; systematic_id "SPBC21C3.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3819083 3819383 . - . mRNA SPBC21C3.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.14c" ; systematic_id "SPBC21C3.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3819384 3821909 . - . mRNA SPBC21C3.14c ; db_xref "SPD:29/29C03" ; systematic_id "SPBC21C3.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC21C3.14c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3819384 3821909 . - . mRNA SPBC21C3.14c ; colour "8" ;
chromosome2 GeneDB 5'-UTR 3821908 3822056 . - . mRNA SPBC21C3.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.14c" ; systematic_id "SPBC21C3.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3822494 3822567 . - . mRNA SPBC21C3.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.15c" ; systematic_id "SPBC21C3.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3822568 3824136 . - . mRNA SPBC21C3.15c ; db_xref "SPD:25/25C10" ; systematic_id "SPBC21C3.15c" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR039C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC21C3.15c" ; product "aldehyde dehydrogenase (predicted)" ;
chromosome2 GeneDB CDS 3822568 3824136 . - . mRNA SPBC21C3.15c ; colour "10" ;
chromosome2 GeneDB CDS_parts 3824636 3824953 . - . mRNA SPBC21C3.16c ; systematic_id "SPBC21C3.16c" ; colour "2" ; gene "spt4 ||| SPBC21C3.16c" ; Alias "spt4" ; db_xref "SPD:01/01F09" ; GO "GO:0000790; nuclear chromatin
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0005515; protein binding
GO:0034244; negative regulation of RNA elongation from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0032044; DSIF complex
GO:0006397; mRNA processing
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR063C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19460865; date=20090712 ||| term=phenotype, sensitive to high temperature; cv=phenotype; db_xref=PMID:19460865; date=20090712 ||| term=phenotype, growth defect, slow growth at high temperatures; cv=phenotype db_xref=PMID:19460865; date=20090712 ||| term=complementation, functionally complemented by S. cerevisiae Spt4; db_xref=PMID:19460865; cv=complementation; date=20090712 ||| term=complementation, functionally complements S. cerevisiae Spt4; db_xref=PMID:19460865; cv=complementation; date=20090712 ||| term=species distribution, conserved in Eukaryotes only; date=20090712" ; primary_name "spt4" ; product "transcription elongation factor complex subunit Spt4" ;
chromosome2 GeneDB CDS 3824636 3824953 . - . mRNA SPBC21C3.16c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3824952 3824965 . - . mRNA SPBC21C3.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.16c" ; systematic_id "SPBC21C3.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3825300 3825603 . - . mRNA SPBC21C3.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.17c" ; systematic_id "SPBC21C3.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3825604 3826214 . - . mRNA SPBC21C3.17c ; db_xref "SPD:42/42D10" ; systematic_id "SPBC21C3.17c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL077W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC21C3.17c" ; product "conserved fungal protein" ; note "homology to YKL077W is low but has conserved residues by multiple alignment, conserved N-terminal signal peptide and C-terminal transmenbrane helix" ;
chromosome2 GeneDB CDS 3825604 3826073 . - . mRNA SPBC21C3.17c ; colour "10" ;
chromosome2 GeneDB CDS 3826124 3826214 . - . mRNA SPBC21C3.17c ; colour "10" ;
chromosome2 GeneDB misc_feature 3826074 3826089 . - . misc_feature unknown_3298 ; colour "6" ; note "ctgacttttgtttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3826118 3826123 . - . misc_feature unknown_3299 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3826213 3826287 . - . mRNA SPBC21C3.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.17c" ; systematic_id "SPBC21C3.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3827159 3827177 . + . mRNA SPBC21C3.18 ; ID "SPBC21C3.18" ; systematic_id "SPBC21C3.18" ; note "mRNA from AB036343" ;
chromosome2 GeneDB CDS_parts 3827178 3828849 . + . mRNA SPBC21C3.18 ; systematic_id "SPBC21C3.18" ; colour "2" ; gene "spo4 ||| SPBC21C3.18" ; Alias "spo4" ; db_xref "SPD:40/40F07" ; GO "GO:0090307; spindle assembly involved in mitosis
GO:0030437; sporulation (sensu Fungi)
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDL017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "spo4" ; product "serine/threonine protein kinase Spo4" ;
chromosome2 GeneDB CDS 3827178 3828171 . + . mRNA SPBC21C3.18 ; colour "2" ;
chromosome2 GeneDB CDS 3828294 3828461 . + . mRNA SPBC21C3.18 ; colour "2" ;
chromosome2 GeneDB CDS 3828722 3828849 . + . mRNA SPBC21C3.18 ; colour "2" ;
chromosome2 GeneDB misc_feature 3828172 3828177 . + . misc_feature unknown_3300 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 3828172 3828293 . + . intron SPBC21C3.18 ; systematic_id "SPBC21C3.18" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3828274 3828293 . + . misc_feature unknown_3301 ; colour "6" ; note "ctaacttgtatttctctcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3828462 3828467 . + . misc_feature unknown_3302 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB intron 3828462 3828721 . + . intron SPBC21C3.18 ; systematic_id "SPBC21C3.18" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 3828707 3828721 . + . misc_feature unknown_3303 ; colour "6" ; note "ctaacaattatctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3828850 3828960 . + . mRNA SPBC21C3.18 ; ID "SPBC21C3.18" ; systematic_id "SPBC21C3.18" ; note "mRNA from AB036343" ;
chromosome2 GeneDB 5'-UTR 3830083 3830166 . + . mRNA SPBC21C3.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.19" ; systematic_id "SPBC21C3.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3830167 3830487 . + . mRNA SPBC21C3.19 ; db_xref "SPD:01/01F11" ; systematic_id "SPBC21C3.19" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016070; RNA metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR087W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC21C3.19" ; product "SBDS family protein Rtc3 (predicted)" ;
chromosome2 GeneDB CDS 3830167 3830487 . + . mRNA SPBC21C3.19 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 3830488 3830907 . + . mRNA SPBC21C3.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.19" ; systematic_id "SPBC21C3.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3831185 3831196 . - . mRNA SPBC21C3.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC21C3.20c" ; systematic_id "SPBC21C3.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3831197 3834493 . - . mRNA SPBC21C3.20c ; systematic_id "SPBC21C3.20c" ; colour "2" ; gene "git1 ||| SPBC21C3.20c" ; Alias "git1" ; db_xref "SPD:30/30C11" ; GO "GO:0019933; cAMP-mediated signaling
GO:0000747; conjugation with cellular fusion
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPAC11E3.02c; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505 ||| term=name description, Glucose Insensitive Transcription; date=20101029" ; primary_name "git1" ; product "C2 domain protein Git1" ;
chromosome2 GeneDB CDS 3831197 3834493 . - . mRNA SPBC21C3.20c ; colour "2" ;
chromosome2 GeneDB misc_feature 3834600 3834702 . + . misc_feature unknown_3304 ; note "nominal overlap with PCR product SPBPJ758 and cosmid SPBPJ758" ;
chromosome2 GeneDB 3'-UTR 3835397 3835842 . - . mRNA SPBC23E6.01c ; ID "SPBC23E6.01c" ; systematic_id "SPBC23E6.01c" ; note "mRNA from AU007922" ;
chromosome2 GeneDB CDS_parts 3835843 3837264 . - . mRNA SPBC23E6.01c ; systematic_id "SPBC23E6.01c" ; colour "7" ; gene "SPBPJ758.01 ||| SPBC23E6.01c" ; Alias "SPBPJ758.01" ; db_xref "SPD:21/21H03" ; synonym "SPBPJ758.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YBR212W and YHR086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000932; cytoplasmic mRNA processing body
GO:0003729; mRNA binding
GO:0071004; U2-type prespliceosome
GO:0070935; 3' UTR mediated mRNA stabilization" ; primary_name "SPBPJ758.01" ; product "mRNA processing factor (predicted)" ;
chromosome2 GeneDB CDS 3835843 3837264 . - . mRNA SPBC23E6.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 3836544 3836643 . + . misc_feature unknown_3305 ; note "nominal overlap with cosmid SPBC23E6 and PCR product SPBPJ758" ;
chromosome2 GeneDB 5'-UTR 3837263 3837278 . - . mRNA SPBC23E6.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.01c" ; systematic_id "SPBC23E6.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3839595 3839636 . + . mRNA SPBC23E6.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.02" ; systematic_id "SPBC23E6.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3839637 3842759 . + . mRNA SPBC23E6.02 ; db_xref "SPD:47/47H05" ; systematic_id "SPBC23E6.02" ; colour "7" ; GO "GO:0016585; chromatin remodeling complex
GO:0006338; chromatin remodeling
GO:0004003; ATP-dependent DNA helicase activity
GO:0006281; DNA repair
GO:0000790; nuclear chromatin
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC23E6.02" ; product "ATP-dependent DNA helicase (predicted)" ;
chromosome2 GeneDB CDS 3839637 3842759 . + . mRNA SPBC23E6.02 ; colour "7" ;
chromosome2 GeneDB CDS_parts 3842842 3843748 . - . mRNA SPBC23E6.03c ; systematic_id "SPBC23E6.03c" ; colour "7" ; gene "nta1 ||| SPBC23E6.03c" ; Alias "nta1" ; db_xref "SPD:12/12E05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0008418; protein N-terminal asparagine amidohydrolase activity
GO:0031363; N-terminal protein amino acid deamination
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0006530; asparagine catabolic process" ; primary_name "nta1" ; product "protein N-terminal amidase Nta1 (predicted)" ; EC_number "3.5.1.-" ;
chromosome2 GeneDB CDS 3842842 3843560 . - . mRNA SPBC23E6.03c ; colour "7" ;
chromosome2 GeneDB CDS 3843607 3843748 . - . mRNA SPBC23E6.03c ; colour "7" ;
chromosome2 GeneDB misc_feature 3843561 3843575 . - . misc_feature unknown_3306 ; colour "6" ; note "ctaactttcctgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3843601 3843606 . - . misc_feature unknown_3307 ; colour "6" ; note "gtgggt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3843747 3843778 . - . mRNA SPBC23E6.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.03c" ; systematic_id "SPBC23E6.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3844161 3844446 . - . mRNA SPBC23E6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.04c" ; systematic_id "SPBC23E6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3844447 3849396 . - . mRNA SPBC23E6.04c ; systematic_id "SPBC23E6.04c" ; colour "7" ; gene "utp10 ||| SPBC23E6.04c" ; Alias "utp10" ; db_xref "SPD:31/31A08" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL109C; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "utp10" ; product "U3 snoRNP-associated protein Utp10 (predicted)" ;
chromosome2 GeneDB CDS 3844447 3849396 . - . mRNA SPBC23E6.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3849395 3849441 . - . mRNA SPBC23E6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.04c" ; systematic_id "SPBC23E6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3849991 3850010 . + . mRNA SPBC23E6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.05" ; systematic_id "SPBC23E6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3850011 3851437 . + . mRNA SPBC23E6.05 ; systematic_id "SPBC23E6.05" ; colour "7" ; gene "arx1 ||| SPBC23E6.05" ; Alias "arx1" ; db_xref "SPD:21/21H11" ; GO "GO:0042273; ribosomal large subunit biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR101C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arx1" ; product "ribosomal export complex protein Arx1, peptidase family (predicted)" ;
chromosome2 GeneDB CDS 3850011 3850187 . + . mRNA SPBC23E6.05 ; colour "7" ;
chromosome2 GeneDB CDS 3850324 3850484 . + . mRNA SPBC23E6.05 ; colour "7" ;
chromosome2 GeneDB CDS 3850522 3851437 . + . mRNA SPBC23E6.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 3850188 3850193 . + . misc_feature unknown_3308 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3850310 3850323 . + . misc_feature unknown_3309 ; colour "6" ; note "ctaacagagatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3850485 3850490 . + . misc_feature unknown_3310 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3850509 3850521 . + . misc_feature unknown_3311 ; colour "6" ; note "ctaattttttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3851438 3851535 . + . mRNA SPBC23E6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.05" ; systematic_id "SPBC23E6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3851590 3851753 . - . mRNA SPBC23E6.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.06c" ; systematic_id "SPBC23E6.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3851754 3852459 . - . mRNA SPBC23E6.06c ; db_xref "SPD:08/08C11" ; systematic_id "SPBC23E6.06c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR487C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0008686; 3,4-dihydroxy-2-butanone-4-phosphate synthase activity
GO:0009231; riboflavin biosynthesis
GO:0005829; cytosol
GO:0005758; mitochondrial intermembrane space" ; gene "SPBC23E6.06c" ; product "3,4-dihydroxy-2-butanone 4-phosphate synthase (predicted)" ; EC_number "3.5.4.25" ;
chromosome2 GeneDB CDS 3851754 3852213 . - . mRNA SPBC23E6.06c ; colour "7" ;
chromosome2 GeneDB CDS 3852257 3852374 . - . mRNA SPBC23E6.06c ; colour "7" ;
chromosome2 GeneDB CDS 3852423 3852459 . - . mRNA SPBC23E6.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 3852214 3852224 . - . misc_feature unknown_3312 ; colour "6" ; note "ctaataaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3852251 3852256 . - . misc_feature unknown_3313 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3852375 3852390 . - . misc_feature unknown_3314 ; colour "6" ; note "ctaatatcatgacaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3852417 3852422 . - . misc_feature unknown_3315 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3852458 3852468 . - . mRNA SPBC23E6.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.06c" ; systematic_id "SPBC23E6.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3852686 3852961 . - . mRNA SPBC23E6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.07c" ; systematic_id "SPBC23E6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3852962 3855942 . - . mRNA SPBC23E6.07c ; systematic_id "SPBC23E6.07c" ; colour "2" ; gene "rfc1 ||| SPBC23E6.07c" ; Alias "rfc1" ; db_xref "SPD:29/29G10" ; GO "GO:0031390; Ctf18 RFC-like complex
GO:0005663; DNA replication factor C complex
GO:0031391; Elg1 RFC-like complex
GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear relication fork
GO:0003689; DNA clamp loader activity
GO:0006261; DNA replication
GO:0006272; leading strand elongation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16040599; date=19700101 ||| term=orthologous to S. cerevisiae YOR217W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11313445; date=20100802" ; primary_name "rfc1" ; product "DNA replication factor C complex subunit Rfc1" ;
chromosome2 GeneDB CDS 3852962 3855515 . - . mRNA SPBC23E6.07c ; colour "2" ;
chromosome2 GeneDB CDS 3855576 3855635 . - . mRNA SPBC23E6.07c ; colour "2" ;
chromosome2 GeneDB CDS 3855684 3855802 . - . mRNA SPBC23E6.07c ; colour "2" ;
chromosome2 GeneDB CDS 3855871 3855942 . - . mRNA SPBC23E6.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 3855516 3855536 . - . misc_feature unknown_3316 ; colour "6" ; note "ctaatttgaatttttgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3855570 3855575 . - . misc_feature unknown_3317 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3855636 3855651 . - . misc_feature unknown_3318 ; colour "6" ; note "ctaaccctccaactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3855678 3855683 . - . misc_feature unknown_3319 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3855803 3855819 . - . misc_feature unknown_3320 ; colour "6" ; note "ctaacgtctttgtctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3855865 3855870 . - . misc_feature unknown_3321 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3855941 3855985 . - . mRNA SPBC23E6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.07c" ; systematic_id "SPBC23E6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3856206 3856353 . + . mRNA SPBC23E6.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.08" ; systematic_id "SPBC23E6.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3856354 3858296 . + . mRNA SPBC23E6.08 ; systematic_id "SPBC23E6.08" ; colour "7" ; db_xref "SPD:40/40G06" ; Alias "sat1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005794; Golgi apparatus
GO:0032045; guanyl-nucleotide exchange factor complex
GO:0042147; retrograde transport, endosome to Golgi" ; primary_name "sat1" ; product "Golgi membrane exchange factor subunit Sat1 (predicted)" ;
chromosome2 GeneDB CDS 3856354 3856696 . + . mRNA SPBC23E6.08 ; colour "7" ;
chromosome2 GeneDB CDS 3856987 3858296 . + . mRNA SPBC23E6.08 ; colour "7" ;
chromosome2 GeneDB misc_feature 3856697 3856702 . + . misc_feature unknown_3322 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3856974 3856986 . + . misc_feature unknown_3323 ; colour "6" ; note "ctaaccgataaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3858293 3863505 . + . misc_feature unknown_3324 ; note "low-complexity gene free region" ;
chromosome2 GeneDB 3'-UTR 3858297 3859947 . + . mRNA SPBC23E6.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.08" ; systematic_id "SPBC23E6.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3858800 3860042 . + . misc_feature unknown_3325 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1891" ;
chromosome2 GeneDB 5'-UTR 3862313 3863504 . + . mRNA SPBC23E6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.09" ; systematic_id "SPBC23E6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3863505 3866813 . + . mRNA SPBC23E6.09 ; systematic_id "SPBC23E6.09" ; colour "2" ; gene "ssn6 ||| SPBC23E6.09" ; Alias "ssn6" ; db_xref "SPD:30/30D01" ; GO "GO:0005634; nucleus
GO:0006342; chromatin silencing
GO:0016481; negative regulation of transcription
GO:0003713; transcription coactivator activity
GO:0016565; general transcriptional repressor activity
GO:0016584; nucleosome spacing
GO:0003714; transcription corepressor activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR112C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100217 ||| term=human KDM6A ortholog; date=20100217" ; primary_name "ssn6" ; product "transcriptional corepressor Ssn6" ;
chromosome2 GeneDB CDS 3863505 3866813 . + . mRNA SPBC23E6.09 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3866814 3866987 . + . mRNA SPBC23E6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.09" ; systematic_id "SPBC23E6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3867334 3867521 . - . mRNA SPBC23E6.10c ; ID "SPBC23E6.10c" ; systematic_id "SPBC23E6.10c" ; note "mRNA from AU010285" ;
chromosome2 GeneDB CDS_parts 3867522 3868601 . - . mRNA SPBC23E6.10c ; db_xref "SPD:16/16G09" ; systematic_id "SPBC23E6.10c" ; colour "7" ; GO "GO:0019509; methionine salvage
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0046523; S-methyl-5-thioribose-1-phosphate isomerase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC23E6.10c" ; product "methylthioribose-1-phosphate isomerase (predicted)" ;
chromosome2 GeneDB CDS 3867522 3868601 . - . mRNA SPBC23E6.10c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3868600 3868638 . - . mRNA SPBC23E6.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC23E6.10c" ; systematic_id "SPBC23E6.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3870230 3870304 . + . mRNA SPBC211.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC211.01" ; systematic_id "SPBC211.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3870305 3871045 . + . mRNA SPBC211.01 ; systematic_id "SPBC211.01" ; colour "7" ; gene "rsm10 ||| SPBC23E6.11 ||| SPBC211.01" ; note "this is reported to be mitochondrial...but maybe it is really cytoplasmic?" ; Alias "rsm10" ; db_xref "SPD:09/09A01" ; synonym "SPBC23E6.11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; primary_name "rsm10" ; product "mitochondrial ribosomal protein subunit S10 (predicted)" ;
chromosome2 GeneDB CDS 3870305 3870372 . + . mRNA SPBC211.01 ; colour "7" ;
chromosome2 GeneDB CDS 3870439 3871045 . + . mRNA SPBC211.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 3870373 3870378 . + . misc_feature unknown_3326 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3870421 3870438 . + . misc_feature unknown_3327 ; colour "6" ; note "ctaaccccaatttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3870457 3871029 . + . misc_feature unknown_3328 ; note "nominal overlap with c7F1 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 3870934 3871029 . + . misc_feature unknown_3329 ; note "nominal overlap with SPBC23E6 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 3871046 3872157 . + . mRNA SPBC211.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC211.01" ; systematic_id "SPBC211.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3871165 3871207 . - . mRNA SPBC211.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC211.02c" ; systematic_id "SPBC211.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3871208 3873638 . - . mRNA SPBC211.02c ; systematic_id "SPBC211.02c" ; colour "2" ; gene "cwf3 ||| syf1 ||| SPBC211.02c" ; Alias "cwf3" ; db_xref "SPD:46/46H05" ; synonym "syf1" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR416W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf3" ; product "complexed with Cdc5 protein Cwf3" ;
chromosome2 GeneDB CDS 3871208 3872764 . - . mRNA SPBC211.02c ; colour "2" ;
chromosome2 GeneDB CDS 3872823 3873638 . - . mRNA SPBC211.02c ; colour "2" ;
chromosome2 GeneDB misc_feature 3872765 3872780 . - . misc_feature unknown_3330 ; colour "6" ; note "ctaacttatcgtacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3872817 3872822 . - . misc_feature unknown_3331 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3873637 3873641 . - . mRNA SPBC211.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC211.02c" ; systematic_id "SPBC211.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snoRNA 3874254 3874906 . - . snoRNA SPNCRNA.445 ; systematic_id "SPNCRNA.445" ; gene "snoR61" ; db_xref "PMID:18488015 ||| EMBL:AJ617330 ||| RFAM:RF00476" ; Alias "snoR61" ; synonym "SPNGAF57" ; GO "GO:0000452; snoRNA guided rRNA 2'-O-methylation
GO:0030562; rRNA 2'-O-ribose methylation guide activity
GO:0031428; box C/D snoRNP complex
GO:0005730; nucleolus" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, gene structure updated; attribution=pers. comm. J. Matthews; cv=warning; date=20080808" ; primary_name "snoR61" ; product "small nucleolar RNA snR61" ;
chromosome2 GeneDB 3'-UTR 3875237 3875451 . - . mRNA SPBC211.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC211.03c" ; systematic_id "SPBC211.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3875452 3879840 . - . mRNA SPBC211.03c ; db_xref "SPD:30/30G11" ; systematic_id "SPBC211.03c" ; colour "7" ; GO "GO:0005086; ARF guanyl-nucleotide exchange factor activity
GO:0006886; intracellular protein transport
GO:0005794; Golgi apparatus
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030036; actin cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR031C and YEL022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC211.03c" ; product "guanyl-nucleotide exchange factor (predicted)" ;
chromosome2 GeneDB CDS 3875452 3879840 . - . mRNA SPBC211.03c ; colour "7" ;
chromosome2 GeneDB CDS_parts 3880318 3882996 . - . mRNA SPBC211.04c ; systematic_id "SPBC211.04c" ; colour "2" ; gene "mcm6 ||| mis5 ||| SPBC211.04c" ; Alias "mcm6" ; db_xref "SPD:40/40H11" ; synonym "mis5" ; GO "GO:0006270; DNA replication initiation
GO:0042555; MCM complex
GO:0000084; S phase of mitotic cell cycle
GO:0005656; pre-replicative complex
GO:0000790; nuclear chromatin
GO:0006271; DNA strand elongation during DNA replication
GO:0004003; ATP-dependent DNA helicase activity
GO:0031261; DNA replication preinitiation complex
GO:0007346; regulation of mitotic cell cycle
GO:0031390; nuclear replication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7865880; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:7865880; date=20100708 ||| term=orthologous to S. cerevisiae YGL201C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mcm6" ; product "MCM complex subunit Mcm6" ;
chromosome2 GeneDB CDS 3880318 3882996 . - . mRNA SPBC211.04c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3882995 3883046 . - . mRNA SPBC211.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC211.04c" ; systematic_id "SPBC211.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3883221 3883595 . + . mRNA SPBC211.05 ; systematic_id "SPBC211.05" ; colour "7" ; gene "SPBC211.05" ; db_xref "SPD:02/02G01" ; Alias "sab10" ; GO "GO:0000398; nuclear mRNA splicing via spliceosome
GO:0005681; spliceosomal complex" ; controlled_curation "term=orthologous to S. cerevisiae YNL138W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sab10" ; product "splicing factor 3B (predicted)" ; reserved_name "sab10" ;
chromosome2 GeneDB CDS 3883221 3883223 . + . mRNA SPBC211.05 ; colour "7" ;
chromosome2 GeneDB CDS 3883286 3883368 . + . mRNA SPBC211.05 ; colour "7" ;
chromosome2 GeneDB CDS 3883424 3883595 . + . mRNA SPBC211.05 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3883596 3883650 . + . mRNA SPBC211.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC211.05" ; systematic_id "SPBC211.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3883765 3883932 . + . mRNA SPBC211.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC211.06" ; systematic_id "SPBC211.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3883933 3885666 . + . mRNA SPBC211.06 ; systematic_id "SPBC211.06" ; colour "2" ; gene "gfh1 ||| SPBC211.06" ; Alias "gfh1" ; db_xref "SPD:45/45F10" ; GO "GO:0005816; spindle pole body
GO:0000923; equatorial microtubule organizing center
GO:0000930; gamma-tubulin complex
GO:0030953; astral microtubule organization and biogenesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=GRIP domain; db_xref=PMID:15004232; date=19700101 ||| term=human GPC4 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Gcp Four Homolog; cv=name_description; date=20090826" ; primary_name "gfh1" ; product "gamma tubulin complex subunit Gfh1" ;
chromosome2 GeneDB CDS 3883933 3885666 . + . mRNA SPBC211.06 ; colour "2" ;
chromosome2 GeneDB intron 3884522 3884608 . + . intron SPBC211.06 ; systematic_id "SPBC211.06" ;
chromosome2 GeneDB 3'-UTR 3885743 3886011 . - . mRNA SPBC211.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC211.07c" ; systematic_id "SPBC211.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3886012 3886566 . - . mRNA SPBC211.07c ; systematic_id "SPBC211.07c" ; colour "7" ; gene "ubc8 ||| SPBC211.07c" ; Alias "ubc8" ; db_xref "SPD:05/05G04" ; GO "GO:0004842; ubiquitin conjugating enzyme activity
GO:0016567; protein ubiquitination
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ubc8" ; product "ubiquitin conjugating enzyme Ubc8 (predicted)" ;
chromosome2 GeneDB CDS 3886012 3886566 . - . mRNA SPBC211.07c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3886565 3886900 . - . mRNA SPBC211.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC211.07c" ; systematic_id "SPBC211.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3887445 3887466 . - . mRNA SPBC211.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC211.08c" ; systematic_id "SPBC211.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3887467 3888278 . - . mRNA SPBC211.08c ; db_xref "SPD:10/10D03" ; systematic_id "SPBC211.08c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR158C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000175; 3'-5'-exoribonuclease activity
GO:0006364; rRNA processing
GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0061013; nuclear-transcribed mRNA catabolism" ; gene "SPBC211.08c" ; product "exosomal 3'-5' exoribonuclease, PH-like (predicted)" ; EC_number "3.1.13.-" ;
chromosome2 GeneDB CDS 3887467 3888125 . - . mRNA SPBC211.08c ; colour "7" ;
chromosome2 GeneDB CDS 3888164 3888278 . - . mRNA SPBC211.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 3888126 3888136 . - . misc_feature unknown_3332 ; colour "6" ; note "ctgacaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3888158 3888163 . - . misc_feature unknown_3333 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 3888696 3891900 . + . mRNA SPBC1604.21c ; systematic_id "SPBC1604.21c" ; colour "2" ; gene "ptr3 ||| uba1 ||| SPBC211.09 ||| SPBC1604.21c" ; Alias "ptr3" ; db_xref "SPD:48/48A09" ; synonym "uba1 ||| SPBC211.09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006406; mRNA export from nucleus
GO:0032446; protein modification by small protein conjugation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL210W; date=19700101 ||| term=human UBA1 ortholog; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ptr3" ; product "ubiquitin activating enzyme E1" ;
chromosome2 GeneDB CDS 3888696 3888701 . + . mRNA SPBC1604.21c ; colour "2" ;
chromosome2 GeneDB CDS 3888760 3888824 . + . mRNA SPBC1604.21c ; colour "2" ;
chromosome2 GeneDB CDS 3888933 3891900 . + . mRNA SPBC1604.21c ; colour "2" ;
chromosome2 GeneDB misc_feature 3888702 3888707 . + . misc_feature unknown_3334 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3888745 3888759 . + . misc_feature unknown_3335 ; colour "6" ; note "ctaacattgcaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3888825 3888830 . + . misc_feature unknown_3336 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3888918 3888932 . + . misc_feature unknown_3337 ; colour "6" ; note "ctaatttatctaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3890692 3890792 . + . misc_feature unknown_3338 ; note "nominal overlap with SPBC1604 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 3891901 3892036 . + . mRNA SPBC1604.21c ; ID "SPBC1604.21c" ; systematic_id "SPBC1604.21c" ; note "mRNA from AU014345" ;
chromosome2 GeneDB 5'-UTR 3892174 3892254 . + . mRNA SPBC1604.25 ; Alias "pet117" ; ID "SPBC1604.25" ; obsolete_name "SPNCRNA.430" ; db_xref "PMID:18488015" ; systematic_id "SPBC1604.25" ; synonym "SPNG1899" ; primary_name "pet117" ;
chromosome2 GeneDB CDS_parts 3892255 3892574 . + . mRNA SPBC1604.25 ; systematic_id "SPBC1604.25" ; colour "7" ; gene "SPBC1604.25 ||| pet117" ; Alias "pet117" ; db_xref "PMID:18488015" ; obsolete_name "SPNCRNA.430" ; synonym "SPNG1899" ; controlled_curation "term=orthologous to S. cerevisiae YER058W; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; GO "GO:0005739; mitochondrion
GO:0008535; respiratory chain complex IV assembly" ; primary_name "pet117" ; product "Pet117 cytochrome c oxidase assemby protein (predicted)" ;
chromosome2 GeneDB CDS 3892255 3892350 . + . mRNA SPBC1604.25 ; colour "7" ;
chromosome2 GeneDB CDS 3892404 3892574 . + . mRNA SPBC1604.25 ; colour "7" ;
chromosome2 GeneDB intron 3892350 3892403 . + . intron SPBC1604.25 ; systematic_id "SPBC1604.25" ; note "confirmed by Solexa transread data PMID:18488015" ;
chromosome2 GeneDB 3'-UTR 3892575 3892932 . + . mRNA SPBC1604.25 ; Alias "pet117" ; ID "SPBC1604.25" ; obsolete_name "SPNCRNA.430" ; db_xref "PMID:18488015" ; systematic_id "SPBC1604.25" ; synonym "SPNG1899" ; primary_name "pet117" ;
chromosome2 GeneDB 5'-UTR 3893113 3893200 . + . mRNA SPBC1604.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.20c" ; systematic_id "SPBC1604.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3893201 3895087 . + . mRNA SPBC1604.20c ; systematic_id "SPBC1604.20c" ; colour "2" ; gene "tea2 ||| klp4 ||| SPBC1604.20c" ; Alias "tea2" ; db_xref "SPD:26/26D10" ; synonym "klp4" ; GO "GO:0051285; cell cortex of cell tip
GO:0005737; cytoplasm
GO:0015630; microtubule cytoskeleton
GO:0008574; plus-end-directed microtubule motor activity
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0007163; establishment and/or maintenance of cell polarity
GO:0007018; microtubule-based movement
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, branched; qualifier=deletion|low_penetrance; db_xref=PMID:8522609; date=20100731 ||| term=phenotype, cell morphology, curved; qualifier=deletion; db_xref=PMID:8522609; date=20100731 ||| term=kinesin Kip2 subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YPL155C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, filament morphology aberrant; qualifier=deletion; db_xref=PMID:19542312; date=20090706 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201 ||| term=name description, Tip Elongation Aberrant; cv=name_description; date=19700101" ; primary_name "tea2" ; product "kinesin-like protein Tea2" ;
chromosome2 GeneDB CDS 3893201 3895087 . + . mRNA SPBC1604.20c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3895088 3895256 . + . mRNA SPBC1604.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.20c" ; systematic_id "SPBC1604.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3895371 3895409 . + . mRNA SPBC1604.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.19c" ; systematic_id "SPBC1604.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3895410 3897386 . + . mRNA SPBC1604.19c ; db_xref "SPD:27/27C01" ; systematic_id "SPBC1604.19c" ; colour "7" ; GO "GO:0006886; intracellular protein transport
GO:0030008; TRAPP complex
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006914; autophagy
GO:0030242; peroxisome degradation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1604.19c" ; product "TRAPP complex subunit Trs85 (predicted)" ;
chromosome2 GeneDB CDS 3895410 3897386 . + . mRNA SPBC1604.19c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3897387 3897514 . + . mRNA SPBC1604.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.19c" ; systematic_id "SPBC1604.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3898065 3898095 . + . mRNA SPBC1604.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.18c" ; systematic_id "SPBC1604.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3898096 3899549 . + . mRNA SPBC1604.18c ; db_xref "SPD:23/23D10" ; systematic_id "SPBC1604.18c" ; colour "7" ; GO "GO:0000815; ESCRT III complex
GO:0045324; late endosome to vacuole transport
GO:0043162; ubiquitin-dependent protein catabolism via the multivesicular body pathway
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL049W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1604.18c" ; product "vacuolar sorting protein (predicted)" ;
chromosome2 GeneDB CDS 3898096 3898374 . + . mRNA SPBC1604.18c ; colour "7" ;
chromosome2 GeneDB CDS 3898418 3898819 . + . mRNA SPBC1604.18c ; colour "7" ;
chromosome2 GeneDB CDS 3898881 3899549 . + . mRNA SPBC1604.18c ; colour "7" ;
chromosome2 GeneDB misc_feature 3898375 3898380 . + . misc_feature unknown_3339 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3898403 3898417 . + . misc_feature unknown_3340 ; colour "6" ; note "ctaataagcatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3898820 3898825 . + . misc_feature unknown_3341 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3898868 3898880 . + . misc_feature unknown_3342 ; colour "6" ; note "ttaacgagaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3899550 3899603 . + . mRNA SPBC1604.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.18c" ; systematic_id "SPBC1604.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3899663 3899668 . + . misc_feature unknown_3343 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3899988 3900046 . + . mRNA SPBC1604.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.17c" ; systematic_id "SPBC1604.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3900047 3901542 . + . mRNA SPBC1604.17c ; systematic_id "SPBC1604.17c" ; colour "2" ; gene "SPBC1604.17c ||| tti2" ; db_xref "SPD:37/37A03" ; Alias "tti2" ; GO "GO:0005515; protein binding
GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR136C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; date=20020429 ||| term=gene name description, Tel Two Interacting protein; db_xref=PMID:18076573; date=20110114" ; primary_name "tti2" ; product "Tel2 interacting protein Tti2, predicted ASTRA complex subunit" ;
chromosome2 GeneDB CDS 3900047 3900121 . + . mRNA SPBC1604.17c ; colour "2" ;
chromosome2 GeneDB CDS 3900166 3901170 . + . mRNA SPBC1604.17c ; colour "2" ;
chromosome2 GeneDB CDS 3901219 3901542 . + . mRNA SPBC1604.17c ; colour "2" ;
chromosome2 GeneDB misc_feature 3900152 3900165 . + . misc_feature unknown_3344 ; colour "6" ; note "ttaaccaaatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3901171 3901176 . + . misc_feature unknown_3345 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3901205 3901218 . + . misc_feature unknown_3346 ; colour "6" ; note "ctaatcgcacttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3901253 3902419 . - . mRNA SPBC1604.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.15" ; systematic_id "SPBC1604.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3901632 3902231 . + . mRNA SPBC1604.16c ; db_xref "SPD:06/06F07" ; systematic_id "SPBC1604.16c" ; colour "10" ; GO "GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1604.16c" ; product "RNA-binding protein, G-patch type (predicted)" ;
chromosome2 GeneDB CDS 3901632 3902231 . + . mRNA SPBC1604.16c ; colour "10" ;
chromosome2 GeneDB 3'-UTR 3902232 3902410 . + . mRNA SPBC1604.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.16c" ; systematic_id "SPBC1604.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3902420 3904057 . - . mRNA SPBC1604.15 ; systematic_id "SPBC1604.15" ; colour "7" ; gene "gpi16 ||| SPBC1604.15" ; Alias "gpi16" ; db_xref "SPD:26/26B06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003923; GPI-anchor transamidase activity
GO:0016255; attachment of GPI anchor to protein
GO:0005789; endoplasmic reticulum membrane
GO:0042765; GPI-anchor transamidase complex" ; primary_name "gpi16" ; product "pig-T (predicted)" ; reserved_name "gpi16" ;
chromosome2 GeneDB CDS 3902420 3904057 . - . mRNA SPBC1604.15 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3904056 3904553 . - . mRNA SPBC1604.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.15" ; systematic_id "SPBC1604.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3904660 3905081 . + . mRNA SPBC1604.14c ; ID "SPBC1604.14c" ; systematic_id "SPBC1604.14c" ; note "mRNA from SP22371" ;
chromosome2 GeneDB CDS_parts 3905082 3907058 . + . mRNA SPBC1604.14c ; systematic_id "SPBC1604.14c" ; colour "2" ; gene "shk1 ||| pak1 ||| orb2 ||| SPBC1604.14c" ; Alias "shk1" ; db_xref "SPD:39/39F04" ; synonym "pak1 ||| orb2" ; GO "GO:0071521; Cdc42 GTPase complex
GO:0032153; cell division site
GO:0051286; cell tip
GO:0005876; spindle microtubule
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0034613; cellular protein localization
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0071775; regulation of cell cycle cytokinesis
GO:0032878; regulation of establishment or maintenance of cell polarity
GO:0032878; regulation of establishment or maintenance of cell polarity
GO:0070507; regulation of microtubule cytoskeleton organization and biogenesis
GO:0032488; Cdc42 protein signal tansduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:8187760; date=20100731 ||| term=PAK-related kinase family; date=19700101 ||| term=orthologous to S. cerevisiae YHL007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=pathway, Ras1-Scd; qualifier=required; db_xref=PMID:7597098; cv=pathway; date=19700101 ||| term=target of Skb15; qualifier=inhibited_by; db_xref=PMID:12764131; date=19700101 ||| term=target is Tea1; qualifier=phosphorylates; db_xref=PMID:12764131; date=20100820 ||| term=target is Rga8; qualifier=phosphorylates; db_xref=PMID:14506270; date=20100820 ||| term=target is Cdc42; qualifier=phosphorylates; db_xref=PMID:9858584; date=20100820" ; primary_name "shk1" ; product "PAK-related kinase Shk1" ;
chromosome2 GeneDB CDS 3905082 3907058 . + . mRNA SPBC1604.14c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3907059 3907593 . + . mRNA SPBC1604.14c ; ID "SPBC1604.14c" ; systematic_id "SPBC1604.14c" ; note "mRNA from SP22371" ;
chromosome2 GeneDB 5'-UTR 3907854 3908137 . + . mRNA SPBC1604.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.13c" ; systematic_id "SPBC1604.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3908138 3908449 . + . mRNA SPBC1604.13c ; systematic_id "SPBC1604.13c" ; colour "7" ; gene "SPBC1604.13c ||| mrpl32" ; Alias "mrpl32" ; db_xref "SPD:01/01F03" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl32" ; product "mitochondrial ribosomal protein subunit L32 (predicted)" ;
chromosome2 GeneDB CDS 3908138 3908449 . + . mRNA SPBC1604.13c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3908450 3908622 . + . mRNA SPBC1604.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.13c" ; systematic_id "SPBC1604.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3908679 3908892 . - . mRNA SPBC1604.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.12" ; systematic_id "SPBC1604.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3908893 3911475 . - . mRNA SPBC1604.12 ; db_xref "SPD:38/38E04" ; systematic_id "SPBC1604.12" ; colour "8" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC1604.12" ; product "sequence orphan" ; note "multiple TSS" ;
chromosome2 GeneDB CDS 3908893 3911475 . - . mRNA SPBC1604.12 ; colour "8" ;
chromosome2 GeneDB 5'-UTR 3911474 3911537 . - . mRNA SPBC1604.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.12" ; systematic_id "SPBC1604.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3911759 3912166 . - . mRNA SPBC1604.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.11" ; systematic_id "SPBC1604.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3912167 3912509 . - . mRNA SPBC1604.11 ; systematic_id "SPBC1604.11" ; colour "7" ; gene "atp17 ||| SPBC1604.11" ; Alias "atp17" ; db_xref "SPD:02/02B01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR377W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0016021; integral to membrane
GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; primary_name "atp17" ; product "F0-ATPase subunit F (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB CDS 3912167 3912403 . - . mRNA SPBC1604.11 ; colour "7" ;
chromosome2 GeneDB CDS 3912456 3912509 . - . mRNA SPBC1604.11 ; colour "7" ;
chromosome2 GeneDB misc_feature 3912404 3912416 . - . misc_feature unknown_3347 ; colour "6" ; note "ctaactaagatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3912450 3912455 . - . misc_feature unknown_3348 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3912508 3912530 . - . mRNA SPBC1604.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.11" ; systematic_id "SPBC1604.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3912870 3913049 . - . mRNA SPBC1604.10 ; Alias "srb7" ; ID "SPBC1604.10" ; systematic_id "SPBC1604.10" ; primary_name "srb7" ; note "mRNA from spc02869" ;
chromosome2 GeneDB CDS_parts 3913050 3913612 . - . mRNA SPBC1604.10 ; systematic_id "SPBC1604.10" ; colour "2" ; gene "srb7 ||| med21 ||| SPBC1604.10" ; Alias "srb7" ; db_xref "SPD:05/05H06" ; synonym "med21" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0006366; transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR308C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MED21 ortholog; date=20110113" ; primary_name "srb7" ; product "mediator complex subunit Srb7" ;
chromosome2 GeneDB CDS 3913050 3913300 . - . mRNA SPBC1604.10 ; colour "2" ;
chromosome2 GeneDB CDS 3913353 3913382 . - . mRNA SPBC1604.10 ; colour "2" ;
chromosome2 GeneDB CDS 3913436 3913529 . - . mRNA SPBC1604.10 ; colour "2" ;
chromosome2 GeneDB CDS 3913571 3913612 . - . mRNA SPBC1604.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 3913301 3913317 . - . misc_feature unknown_3349 ; colour "6" ; note "ctaacttctttttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3913347 3913352 . - . misc_feature unknown_3350 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3913383 3913397 . - . misc_feature unknown_3351 ; colour "6" ; note "ctaacaaattattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3913430 3913435 . - . misc_feature unknown_3352 ; colour "6" ; note "gtatac, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3913530 3913542 . - . misc_feature unknown_3353 ; colour "6" ; note "ctaacctatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3913565 3913570 . - . misc_feature unknown_3354 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome2 GeneDB tRNA 3914043 3914121 . + . tRNA SPBTRNALEU.10 ; systematic_id "SPBTRNALEU.10" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033444; AAG codon-amino acid adaptor activity" ; gene "SPBTRNALEU.10" ; product "tRNA Leucine" ; note "tRNA Leu anticodon AAG, Cove score 46.56" ;
chromosome2 GeneDB 5'-UTR 3914671 3914695 . + . mRNA SPBC1604.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.09c" ; systematic_id "SPBC1604.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3914696 3915552 . + . mRNA SPBC1604.09c ; db_xref "SPD:11/11D02" ; systematic_id "SPBC1604.09c" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0005634; nucleus
GO:0008408; 3'-5' exonuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL080C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1604.09c" ; product "exoribonuclease Rex4 (predicted)" ;
chromosome2 GeneDB CDS 3914696 3914728 . + . mRNA SPBC1604.09c ; colour "7" ;
chromosome2 GeneDB CDS 3914803 3915552 . + . mRNA SPBC1604.09c ; colour "7" ;
chromosome2 GeneDB misc_feature 3914729 3914734 . + . misc_feature unknown_3355 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3914782 3914802 . + . misc_feature unknown_3356 ; colour "6" ; note "ctaacggtattggttgtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3915553 3915719 . + . mRNA SPBC1604.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.09c" ; systematic_id "SPBC1604.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3916583 3916625 . + . mRNA SPBC1604.08c ; Alias "imp1" ; ID "SPBC1604.08c" ; systematic_id "SPBC1604.08c" ; primary_name "imp1" ; note "mRNA from spc10701 1 155" ;
chromosome2 GeneDB CDS_parts 3916626 3918245 . + . mRNA SPBC1604.08c ; systematic_id "SPBC1604.08c" ; colour "2" ; gene "imp1 ||| SPBC1604.08c" ; Alias "imp1" ; db_xref "SPD:25/25H09" ; GO "GO:0005643; nuclear pore
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0005515; protein binding
GO:0008565; protein transporter activity
GO:0000087; M phase of mitotic cell cycle
GO:0006607; NLS-bearing substrate import into nucleus
GO:0040023; establishment of nucleus localization
GO:0006913; nucleocytoplasmic transport
GO:0007346; regulation of progression through mitotic cell cycle
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15937127; date=19700101 ||| term=armadillo repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "imp1" ; product "importin alpha" ;
chromosome2 GeneDB CDS 3916626 3918245 . + . mRNA SPBC1604.08c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3918246 3918413 . + . mRNA SPBC1604.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.08c" ; systematic_id "SPBC1604.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3918576 3918768 . - . mRNA SPBC1604.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.07" ; systematic_id "SPBC1604.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3918769 3919547 . - . mRNA SPBC1604.07 ; systematic_id "SPBC1604.07" ; colour "7" ; gene "atp4 ||| SPBC1604.07" ; Alias "atp4" ; db_xref "SPD:09/09F12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0000274; proton-transporting ATP synthase, stator stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0016021; integral to membrane
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; primary_name "atp4" ; product "F0-ATPase subunit (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB CDS 3918769 3919484 . - . mRNA SPBC1604.07 ; colour "7" ;
chromosome2 GeneDB CDS 3919529 3919547 . - . mRNA SPBC1604.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 3919485 3919499 . - . misc_feature unknown_3357 ; colour "6" ; note "ctaataattatatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3919523 3919528 . - . misc_feature unknown_3358 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3919546 3919569 . - . mRNA SPBC1604.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.07" ; systematic_id "SPBC1604.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3920065 3920072 . + . mRNA SPBC1604.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.06c" ; systematic_id "SPBC1604.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3920073 3921530 . + . mRNA SPBC1604.06c ; db_xref "SPD:44/44G02" ; systematic_id "SPBC1604.06c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR144C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1604.06c" ; product "CBF/Mak21 family (predicted)" ;
chromosome2 GeneDB CDS 3920073 3921530 . + . mRNA SPBC1604.06c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3921531 3921549 . + . mRNA SPBC1604.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.06c" ; systematic_id "SPBC1604.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3921659 3921801 . - . mRNA SPBC1604.05 ; ID "SPBC1604.05" ; systematic_id "SPBC1604.05" ; note "mRNA from spc10828" ;
chromosome2 GeneDB CDS_parts 3921802 3923454 . - . mRNA SPBC1604.05 ; systematic_id "SPBC1604.05" ; colour "7" ; gene "pgi1 ||| SPBC1604.05" ; Alias "pgi1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00030; ||| KEGG:MAP00500; ||| SPD:33/33C10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR196C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006094; gluconeogenesis
GO:0006096; glycolysis
GO:0006098; pentose-phosphate shunt
GO:0004347; glucose-6-phosphate isomerase activity
GO:0005829; cytosol" ; primary_name "pgi1" ; product "glucose-6-phosphate isomerase (predicted)" ; EC_number "5.3.1.9" ;
chromosome2 GeneDB CDS 3921802 3923454 . - . mRNA SPBC1604.05 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3923455 3923567 . - . mRNA SPBC1604.05 ; ID "SPBC1604.05" ; systematic_id "SPBC1604.05" ; note "mRNA from spc10375" ;
chromosome2 GeneDB 3'-UTR 3923965 3924319 . - . mRNA SPBC1604.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.04" ; systematic_id "SPBC1604.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3924320 3925310 . - . mRNA SPBC1604.04 ; db_xref "SPD:14/14D11" ; systematic_id "SPBC1604.04" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0015234; thiamin transporter activity
GO:0071934; thiamin transmembrane transport
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=mitochondrial carrier; date=19700101" ; gene "SPBC1604.04" ; product "mitochondrial thiamine pyrophosphate transporter (predicted)" ;
chromosome2 GeneDB CDS 3924320 3925172 . - . mRNA SPBC1604.04 ; colour "7" ;
chromosome2 GeneDB CDS 3925219 3925310 . - . mRNA SPBC1604.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 3925173 3925189 . - . misc_feature unknown_3359 ; colour "6" ; note "ttaacgatttaaactag, splice branch and acceptor" ;
chromosome2 GeneDB intron 3925173 3925218 . - . intron SPBC1604.04 ; systematic_id "SPBC1604.04" ; note "confirmed by mRNA from AU012021" ;
chromosome2 GeneDB misc_feature 3925213 3925218 . - . misc_feature unknown_3360 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3925311 3925407 . - . mRNA SPBC1604.04 ; ID "SPBC1604.04" ; systematic_id "SPBC1604.04" ; note "mRNA from spc06230" ;
chromosome2 GeneDB 5'-UTR 3926990 3927013 . + . mRNA SPBC1604.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.03c" ; systematic_id "SPBC1604.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3927014 3928006 . + . mRNA SPBC1604.03c ; db_xref "SPD:14/14E03" ; systematic_id "SPBC1604.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100126 ||| term=species distribution, conserved in Fungi only; date=20100126 ||| term=species distribution, conserved in Eukaryotes; date=20100126 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100126" ; colour "10" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 3927014 3928006 . + . mRNA SPBC1604.03c ; colour "10" ;
chromosome2 GeneDB 3'-UTR 3928007 3928037 . + . mRNA SPBC1604.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.03c" ; systematic_id "SPBC1604.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3928201 3928422 . + . mRNA SPBC1604.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.02c" ; systematic_id "SPBC1604.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3928423 3930516 . + . mRNA SPBC1604.02c ; db_xref "SPD:27/27H02" ; systematic_id "SPBC1604.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; colour "8" ; gene "SPBC1604.02c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 3928423 3930516 . + . mRNA SPBC1604.02c ; colour "8" ;
chromosome2 GeneDB 3'-UTR 3930517 3930732 . + . mRNA SPBC1604.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.02c" ; systematic_id "SPBC1604.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3930787 3930791 . - . mRNA SPBC1604.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.01" ; systematic_id "SPBC1604.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3930792 3933113 . - . mRNA SPBC1604.01 ; systematic_id "SPBC1604.01" ; colour "7" ; gene "SPBC1604.01 ||| SPBC1677.01c ||| mug158" ; Alias "mug158" ; db_xref "SPD:28/28C11" ; synonym "SPBC1677.01c" ; GO "GO:0005783; endoplasmic reticulum
GO:0005509; calcium ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, lysosomal storage disease multiple sulfatase deficiency (MSD); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mug158" ; product "sulfatase modifying factor 1 related (predicted)" ;
chromosome2 GeneDB CDS 3930792 3933113 . - . mRNA SPBC1604.01 ; colour "7" ;
chromosome2 GeneDB misc_feature 3932416 3932516 . - . misc_feature unknown_3361 ; note "nominal overlap with cosmid SPBC1604, EM:AL034433 S.pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 3932416 3932516 . + . misc_feature unknown_3362 ; note "nominal overlap with cosmid SPBC1677, EM:AL035581 S.pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 3933112 3933318 . - . mRNA SPBC1604.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1604.01" ; systematic_id "SPBC1604.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3933388 3933894 . + . misc_RNA SPNCRNA.545 ; db_xref "PMID:18488015" ; synonym "SPNGAF41" ; systematic_id "SPNCRNA.545" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB misc_RNA 3934357 3934809 . - . misc_RNA SPNCRNA.20 ; Alias "prl20" ; db_xref "PMID:12597277 ||| EMBL:AB084832" ; systematic_id "SPNCRNA.20" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl20" ; gene "prl20 ||| SPNCRNA.20" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome2 GeneDB misc_feature 3934571 3934691 . - . misc_feature unknown_3363 ; note "similar to HSDJ900E8 AL109623 human DNA sequence from clone 900E8 on chromosome Xq25-27.1" ;
chromosome2 GeneDB LTR 3934659 3934738 . - . LTR unknown_3364 ; note "degraded Tf2-type LTR" ;
chromosome2 GeneDB 5'-UTR 3935133 3935143 . + . mRNA SPBC1677.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1677.02" ; systematic_id "SPBC1677.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3935144 3935481 . + . mRNA SPBC1677.02 ; systematic_id "SPBC1677.02" ; colour "2" ; gene "dpm3 ||| SPBC1677.02" ; Alias "dpm3" ; db_xref "SPD:02/02A02" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006487; protein amino acid N-linked glycosylation
GO:0006493; protein amino acid O-linked glycosylation
GO:0006506; GPI anchor biosynthesis
GO:0004582; dolichyl-phosphate beta-D- mannosyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dpm3" ; product "dolichol-phosphate mannosyltransferase subunit 3" ;
chromosome2 GeneDB CDS 3935144 3935359 . + . mRNA SPBC1677.02 ; colour "2" ;
chromosome2 GeneDB CDS 3935425 3935481 . + . mRNA SPBC1677.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 3935360 3935365 . + . misc_feature unknown_3365 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3935412 3935424 . + . misc_feature unknown_3366 ; colour "6" ; note "ttaacaaaattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3935515 3935863 . - . mRNA SPBC1677.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1677.03c" ; systematic_id "SPBC1677.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3935864 3937666 . - . mRNA SPBC1677.03c ; db_xref "KEGG:MAP00260; ||| SPD:36/36E02" ; systematic_id "SPBC1677.03c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004794; threonine ammonia-lyase activity
GO:0005739; mitochondrion
GO:0009097; isoleucine biosynthesis" ; gene "SPBC1677.03c" ; product "mitochondrial threonine ammonia-lyase (predicted)" ; EC_number "4.3.1.19" ;
chromosome2 GeneDB CDS 3935864 3937666 . - . mRNA SPBC1677.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 3937665 3937718 . - . mRNA SPBC1677.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1677.03c" ; systematic_id "SPBC1677.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB rRNA 3938578 3938707 . + . rRNA SPRRNA.36 ; db_xref "EM:K00570" ; systematic_id "SPRRNA.36" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.36" ; product "5S rRNA" ;
chromosome2 GeneDB tRNA 3939227 3939297 . + . tRNA SPBTRNAASP.04 ; systematic_id "SPBTRNAASP.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033450; GTC codon-amino acid adaptor activity" ; gene "SPBTRNAASP.04" ; product "tRNA Aspartic acid" ; note "tRNA Asp anticodon GTC, Cove score 70.49" ;
chromosome2 GeneDB 5'-UTR 3939420 3940573 . + . mRNA SPBC26H8.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.01" ; systematic_id "SPBC26H8.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3940363 3940459 . + . misc_feature unknown_3367 ; note "nominal overlap with cosmid SPBC1677 and cosmid SPBC26H8" ;
chromosome2 GeneDB CDS_parts 3940574 3941560 . + . mRNA SPBC26H8.01 ; systematic_id "SPBC26H8.01" ; colour "2" ; gene "thi2 ||| nmt2 ||| SPBC26H8.01" ; note "Match to PF01946 Thi4, Thi4 family Score 628.69" ; Alias "thi2" ; db_xref "SPD:40/40B12" ; synonym "nmt2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR144W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0018131; oxazole or thiazole biosynthesis
GO:0009228; thiamin biosynthesis
GO:0005739; mitochondrion" ; primary_name "thi2" ; product "thiazole biosynthetic enzyme" ;
chromosome2 GeneDB CDS 3940574 3941560 . + . mRNA SPBC26H8.01 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3941561 3941624 . + . mRNA SPBC26H8.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.01" ; systematic_id "SPBC26H8.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3942173 3942484 . - . mRNA SPBC26H8.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.02c" ; systematic_id "SPBC26H8.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3942485 3943744 . - . mRNA SPBC26H8.02c ; systematic_id "SPBC26H8.02c" ; colour "2" ; gene "sec9 ||| SPBC26H8.02c" ; Alias "sec9" ; db_xref "SPD:20/20B06" ; GO "GO:0005628; prospore membrane
GO:0005484; SNAP receptor activity
GO:0031321; prospore formation
GO:0031321; prospore formation
GO:0030437; sporulation (sensu Fungi)
GO:0006893; Golgi to plasma membrane transport
GO:0006906; vesicle fusion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16272747; date=20060530 ||| term=gene expression, transcriptionally regulated by Mei4; qualifier=during_meiosis; db_xref=PMID:16272747; cv=gene_ex; date=20060530 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGR009c and YMR017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, schizophrenia; date=20101119" ; primary_name "sec9" ; product "SNAP-25 homologue, t-SNARE component Sec9" ;
chromosome2 GeneDB CDS 3942485 3943744 . - . mRNA SPBC26H8.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3943743 3943989 . - . mRNA SPBC26H8.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.02c" ; systematic_id "SPBC26H8.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snoRNA 3944573 3944645 . + . snoRNA SPSNORNA.28 ; Alias "snoR68" ; systematic_id "SPSNORNA.28" ; controlled_curation "term=orthologous to S. cerevisiae snR68; date=20070104" ; primary_name "snoR68" ; gene "snoR68 ||| SPSNORNA.28" ; product "small nucleolar RNA R68 (predicted)" ;
chromosome2 GeneDB 5'-UTR 3945747 3946060 . + . mRNA SPBC26H8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.03" ; systematic_id "SPBC26H8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3946061 3948778 . + . mRNA SPBC26H8.03 ; systematic_id "SPBC26H8.03" ; colour "2" ; gene "cho2 ||| SPBC26H8.03" ; Alias "cho2" ; db_xref "KEGG:MAP00260; ||| SPD:22/22A08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGR157W; date=19700101" ; GO "GO:0006656; phosphatidylcholine biosynthesis
GO:0004608; phosphatidylethanolamine N- methyltransferase activity
GO:0005789; endoplasmic reticulum membrane" ; primary_name "cho2" ; product "phosphatidylethanolamine N-methyltransferase Cho2" ; EC_number "2.1.1.17" ;
chromosome2 GeneDB CDS 3946061 3948778 . + . mRNA SPBC26H8.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3948779 3948883 . + . mRNA SPBC26H8.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.03" ; systematic_id "SPBC26H8.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3949158 3949184 . - . mRNA SPBC26H8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.04c" ; systematic_id "SPBC26H8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3949185 3953675 . - . mRNA SPBC26H8.04c ; db_xref "SPD:30/30H06" ; systematic_id "SPBC26H8.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR138W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human DEPDC5 ortholog; date=20100727" ; colour "10" ; gene "SPBC26H8.04c" ; product "DEP domain protein" ;
chromosome2 GeneDB CDS 3949185 3953675 . - . mRNA SPBC26H8.04c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3953674 3953778 . - . mRNA SPBC26H8.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.04c" ; systematic_id "SPBC26H8.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3954605 3954714 . - . mRNA SPBC26H8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.05c" ; systematic_id "SPBC26H8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3954715 3955929 . - . mRNA SPBC26H8.05c ; systematic_id "SPBC26H8.05c" ; colour "7" ; gene "SPBC26H8.05c" ; note "possible intron between 145 21,14639 would improve homology slightly, but has no good acceptor, and insertions are present at this position" ; db_xref "SPD:22/22B06" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR075W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "serine/threonine protein phosphatase (predicted)" ;
chromosome2 GeneDB CDS 3954715 3955236 . - . mRNA SPBC26H8.05c ; colour "7" ;
chromosome2 GeneDB CDS 3955290 3955744 . - . mRNA SPBC26H8.05c ; colour "7" ;
chromosome2 GeneDB CDS 3955860 3955929 . - . mRNA SPBC26H8.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 3955237 3955254 . - . misc_feature unknown_3368 ; colour "6" ; note "ttaacgctttttatgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3955284 3955289 . - . misc_feature unknown_3369 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3955745 3955761 . - . misc_feature unknown_3370 ; colour "6" ; note "ctaacgttttgtggtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3955854 3955859 . - . misc_feature unknown_3371 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3955928 3956034 . - . mRNA SPBC26H8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.05c" ; systematic_id "SPBC26H8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3956453 3957044 . + . misc_RNA SPNCRNA.431 ; db_xref "PMID:18488015" ; synonym "SPNG1906" ; systematic_id "SPNCRNA.431" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 3957408 3957503 . + . mRNA SPBC26H8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.06" ; systematic_id "SPBC26H8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3957504 3958238 . + . mRNA SPBC26H8.06 ; systematic_id "SPBC26H8.06" ; colour "2" ; gene "grx4 ||| SPBC26H8.06" ; Alias "grx4" ; db_xref "SPD:08/08H06" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008794; arsenate reductase (glutaredoxin) activity
GO:0015035; protein disulfide oxidoreductase activity
GO:0034599; cellular response to oxidative stress
GO:0019430; removal of superoxide radicals" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15796926; date=19700101 ||| term=orthologous to S. cerevisiae YDR098C and YER174C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111" ; primary_name "grx4" ; product "glutaredoxin Grx4" ;
chromosome2 GeneDB CDS 3957504 3958238 . + . mRNA SPBC26H8.06 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3958239 3958395 . + . mRNA SPBC26H8.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.06" ; systematic_id "SPBC26H8.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB snRNA 3958768 3959174 . - . snRNA SPSNRNA.07 ; Alias "snu32" ; db_xref "EMBL:X56189 ||| RFAM:RF00012" ; systematic_id "SPSNRNA.07" ; primary_name "snu32" ; gene "snu32 ||| SPSNRNA.07" ; product "small nuclear RNA U3B" ;
chromosome2 GeneDB misc_RNA 3960007 3960165 . + . misc_RNA SPNCRNA.89 ; systematic_id "SPNCRNA.89" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.89" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB 3'-UTR 3960105 3960641 . - . mRNA SPBC26H8.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.13c" ; systematic_id "SPBC26H8.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3960642 3961100 . - . mRNA SPBC26H8.13c ; db_xref "SPD:04/04B01" ; systematic_id "SPBC26H8.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Eukaryotes; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20091106 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106" ; colour "10" ; gene "SPBC26H8.13c" ; product "Siva family protein (predicted)" ;
chromosome2 GeneDB CDS 3960642 3960696 . - . mRNA SPBC26H8.13c ; colour "10" ;
chromosome2 GeneDB CDS 3960781 3961100 . - . mRNA SPBC26H8.13c ; colour "10" ;
chromosome2 GeneDB misc_feature 3960697 3960711 . - . misc_feature unknown_3372 ; colour "6" ; note "ctaacatgaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3960775 3960780 . - . misc_feature unknown_3373 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 3961861 3961942 . - . mRNA SPBC26H8.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.14c" ; systematic_id "SPBC26H8.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3961943 3962279 . - . mRNA SPBC26H8.14c ; systematic_id "SPBC26H8.14c" ; colour "7" ; gene "cox17 ||| SPBC26H8.14c" ; Alias "cox17" ; db_xref "SPD:02/02A01" ; GO "GO:0005829; cytosol
GO:0005758; mitochondrial intermembrane space
GO:0016531; copper chaperone activity
GO:0008535; cytochrome c oxidase complex assembly
GO:0015680; intracellular copper ion transport
GO:0007005; mitochondrion organization and biogenesis
GO:0006878; cellular copper ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cox17" ; product "cytochrome C oxidase copper chaperone Cox17 (predicted)" ;
chromosome2 GeneDB CDS 3961943 3961973 . - . mRNA SPBC26H8.14c ; colour "7" ;
chromosome2 GeneDB CDS 3962021 3962124 . - . mRNA SPBC26H8.14c ; colour "7" ;
chromosome2 GeneDB CDS 3962202 3962279 . - . mRNA SPBC26H8.14c ; colour "7" ;
chromosome2 GeneDB misc_feature 3961974 3961986 . - . misc_feature unknown_3374 ; colour "6" ; note "ttgactatttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3962015 3962020 . - . misc_feature unknown_3375 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3962125 3962141 . - . misc_feature unknown_3376 ; colour "6" ; note "ttaatatgaacgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3962196 3962201 . - . misc_feature unknown_3377 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_RNA 3962690 3962794 . + . misc_RNA SPNCRNA.515 ; systematic_id "SPNCRNA.515" ; controlled_curation "term=warning, new gene; db_xref=PMID:18641648; date=20100426" ; product "non-coding RNA (predicted)" ; note "transfrag R" ;
chromosome2 GeneDB CDS_parts 3963243 3963615 . - . mRNA SPBC26H8.16 ; db_xref "PMID:18488015" ; systematic_id "SPBC26H8.16" ; controlled_curation "term=orthologous to S. cerevisiae YBR269C; date=20080103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=human Corf57 ortholog; date=20100727" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPBC26H8.16" ; product "mitochondrial protein, DUF1674 family" ;
chromosome2 GeneDB CDS 3963243 3963323 . - . mRNA SPBC26H8.16 ; colour "10" ;
chromosome2 GeneDB CDS 3963394 3963615 . - . mRNA SPBC26H8.16 ; colour "10" ;
chromosome2 GeneDB intron 3963324 3963393 . - . intron SPBC26H8.16 ; db_xref "PMID:18488015" ; systematic_id "SPBC26H8.16" ;
chromosome2 GeneDB 3'-UTR 3964092 3964275 . - . mRNA SPBC26H8.07c ; ID "SPBC26H8.07c" ; systematic_id "SPBC26H8.07c" ; note "mRNA from AU007427" ;
chromosome2 GeneDB CDS_parts 3964276 3965924 . - . mRNA SPBC26H8.07c ; systematic_id "SPBC26H8.07c" ; colour "2" ; gene "nda3 ||| ben1 ||| alp12 ||| SPBC26H8.07c" ; Alias "nda3" ; db_xref "SPD:33/33C09" ; synonym "ben1 ||| alp12" ; GO "GO:0005874; microtubule
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0005525; GTP binding
GO:0005200; structural constituent of cytoskeleton
GO:0007163; establishment and/or maintenance of cell polarity
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL037W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nda3" ; product "tubulin beta Nda3" ;
chromosome2 GeneDB CDS 3964276 3964577 . - . mRNA SPBC26H8.07c ; colour "2" ;
chromosome2 GeneDB CDS 3964663 3965548 . - . mRNA SPBC26H8.07c ; colour "2" ;
chromosome2 GeneDB CDS 3965638 3965692 . - . mRNA SPBC26H8.07c ; colour "2" ;
chromosome2 GeneDB CDS 3965734 3965775 . - . mRNA SPBC26H8.07c ; colour "2" ;
chromosome2 GeneDB CDS 3965827 3965876 . - . mRNA SPBC26H8.07c ; colour "2" ;
chromosome2 GeneDB CDS 3965913 3965924 . - . mRNA SPBC26H8.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 3964578 3964592 . - . misc_feature unknown_3378 ; colour "6" ; note "ctaacctcgaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3964657 3964662 . - . misc_feature unknown_3379 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3965549 3965561 . - . misc_feature unknown_3380 ; colour "6" ; note "ctgacgactgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3965632 3965637 . - . misc_feature unknown_3381 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3965693 3965707 . - . misc_feature unknown_3382 ; colour "6" ; note "ctgacttttacgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3965728 3965733 . - . misc_feature unknown_3383 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3965776 3965789 . - . misc_feature unknown_3384 ; colour "6" ; note "ctaacgcttggaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3965821 3965826 . - . misc_feature unknown_3385 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3965877 3965887 . - . misc_feature unknown_3386 ; colour "6" ; note "ctaatcaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3965907 3965912 . - . misc_feature unknown_3387 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3965923 3965931 . - . mRNA SPBC26H8.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.07c" ; systematic_id "SPBC26H8.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3966592 3966699 . - . mRNA SPBC26H8.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.08c" ; systematic_id "SPBC26H8.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3966700 3968155 . - . mRNA SPBC26H8.08c ; systematic_id "SPBC26H8.08c" ; colour "2" ; gene "grn1 ||| SPBC26H8.08c" ; Alias "grn1" ; db_xref "SPD:44/44G01" ; GO "GO:0005730; nucleolus
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0003723; RNA binding
GO:0006364; 35S primary transcript processing
GO:0051301; cell division
GO:0040010; positive regulation of growth rate
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, NLS; cv=sequence_feature; qualifier=predicted; evidence=ISS; db_xref=PMID:16251348; date=20060328 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16251348; date=20060328 ||| term=complementation, functionally complemented by human GNL3L; db_xref=PMID:16251348; cv=complementation; date=20060328 ||| term=orthologous to S. cerevisiae YER006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "grn1" ; product "GTPase Grn1" ;
chromosome2 GeneDB CDS 3966700 3968099 . - . mRNA SPBC26H8.08c ; colour "2" ;
chromosome2 GeneDB CDS 3968143 3968155 . - . mRNA SPBC26H8.08c ; colour "2" ;
chromosome2 GeneDB misc_feature 3968100 3968116 . - . misc_feature unknown_3388 ; colour "6" ; note "ctaacttatttcttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3968137 3968142 . - . misc_feature unknown_3389 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3968154 3968191 . - . mRNA SPBC26H8.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.08c" ; systematic_id "SPBC26H8.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3968517 3968555 . - . mRNA SPBC26H8.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.09c" ; systematic_id "SPBC26H8.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3968556 3970103 . - . mRNA SPBC26H8.09c ; systematic_id "SPBC26H8.09c" ; colour "2" ; gene "SPBC26H8.09c" ; note "repeat consensus HHDNSNKESTNLDDLNMLEEPK" ; Alias "snf59" ; db_xref "SPD:45/45A02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20060707 ||| term=orthologous to S. cerevisiae YFL049W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0010551; regulation of specific transcription from RNA polymerase II promoter
GO:0016514; SWI/SNF complex" ; primary_name "snf59" ; product "SWI/SNF complex subunit Snf59" ;
chromosome2 GeneDB CDS 3968556 3970103 . - . mRNA SPBC26H8.09c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3970102 3970170 . - . mRNA SPBC26H8.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.09c" ; systematic_id "SPBC26H8.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3970969 3974045 . + . mRNA SPBC26H8.10 ; systematic_id "SPBC26H8.10" ; colour "2" ; gene "dis3 ||| SPBC26H8.10 ||| rrp44" ; note "does not bind GeneDB_Spombe:SPBC776.02c PMID 1944266" ; Alias "dis3" ; db_xref "SPD:34/34A05" ; synonym "rrp44" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:1944266; date=19700101 ||| term=orthologous to S. cerevisiae YOL021C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18025105; date=20090110 ||| term=PINc domain; date=20091004 ||| term=name description, chromosome DISjunction; cv=name_description; date=20091209" ; GO "GO:0000177; cytoplasmic exosome (RNase complex)
GO:0005739; mitochondrion
GO:0000176; nuclear exosome (RNase complex)
GO:0005634; nucleus
GO:0000175; 3'-5'-exoribonuclease activity
GO:0008536; Ran GTPase binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0007346; regulation of progression through mitotic cell cycle
GO:0032853; positive regulation of Ran GTPase
GO:0000465; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
GO:0007051; spindle organization
GO:0061013; nuclear-transcribed mRNA catabolism" ; primary_name "dis3" ; product "3'-5' exoribonuclease subunit Dis3 (predicted)" ;
chromosome2 GeneDB CDS 3970969 3971161 . + . mRNA SPBC26H8.10 ; colour "2" ;
chromosome2 GeneDB CDS 3971326 3974045 . + . mRNA SPBC26H8.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 3971162 3971167 . + . misc_feature unknown_3390 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3971310 3971325 . + . misc_feature unknown_3391 ; colour "6" ; note "ttaactcttacgatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3974097 3974365 . - . mRNA SPBC26H8.11c ; ID "SPBC26H8.11c" ; systematic_id "SPBC26H8.11c" ; note "mRNA from AU011994" ;
chromosome2 GeneDB CDS_parts 3974366 3974893 . - . mRNA SPBC26H8.11c ; db_xref "SPD:05/05C12" ; systematic_id "SPBC26H8.11c" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL095W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC26H8.11c" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 3974366 3974893 . - . mRNA SPBC26H8.11c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3974894 3974994 . - . mRNA SPBC26H8.11c ; ID "SPBC26H8.11c" ; systematic_id "SPBC26H8.11c" ; note "mRNA from AU009924" ;
chromosome2 GeneDB 5'-UTR 3976712 3976840 . + . mRNA SPBC26H8.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.12" ; systematic_id "SPBC26H8.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3976841 3977974 . + . mRNA SPBC26H8.12 ; db_xref "SPD:17/17H01" ; systematic_id "SPBC26H8.12" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0004408; holocytochrome-c synthase activity
GO:0018063; cytochrome c-heme linkage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL039C; date=19700101 ||| term=disease associated, microphthalmia; date=20080204 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC26H8.12" ; product "cytochrome c heme lyase (predicted)" ;
chromosome2 GeneDB CDS 3976841 3977974 . + . mRNA SPBC26H8.12 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3977975 3978255 . + . mRNA SPBC26H8.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC26H8.12" ; systematic_id "SPBC26H8.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 3978616 3980728 . - . misc_RNA SPNCRNA.111 ; db_xref "PMID:18488015 ||| EMBL:AU009915" ; systematic_id "SPNCRNA.111" ; controlled_curation "term=; qualifier=predicted; db_xref=PMID:18488015; date=20080430 ||| term=; qualifier=predicted; db_xref=EMBL:AU009915; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU009915; date=20050412" ; gene "SPNCRNA.111" ; product "non-coding RNA (predicted)" ; note "identical to mRNA from spc00524 and AU009915 231 1 but not associated with an ORF ||| extended by affey SPNGAF1" ;
chromosome2 GeneDB misc_feature 3979758 3979882 . + . misc_feature unknown_3392 ; note "nominal overlap with cosmid SPBC604 and cosmid SPBC26H8" ;
chromosome2 GeneDB misc_feature 3981578 3981679 . + . misc_feature unknown_3393 ; note "nominal overlap with cosmid SPBC32C12 and cosmid SPBC604" ;
chromosome2 GeneDB misc_feature 3982262 3983105 . + . misc_feature unknown_3394 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG1914" ;
chromosome2 GeneDB 5'-UTR 3983916 3985585 . + . mRNA SPBC32C12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32C12.02" ; systematic_id "SPBC32C12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3985586 3986992 . + . mRNA SPBC32C12.02 ; systematic_id "SPBC32C12.02" ; colour "2" ; gene "ste11 ||| aff1 ||| stex ||| SPBC32C12.02" ; note "the equivalent function in S. cerevisiae is performed by STE12, but this is STE-like not HMG" ; Alias "ste11" ; db_xref "SPD:33/33A02" ; synonym "aff1 ||| stex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulates mei2; cv=gene_ex; date=20060818 ||| term=HMG box; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to P. Carinii STE11; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17032641; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=DNA binding specificity, binds TR-BOX 5'-TTCTTTGTT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=phenotype, sterile; db_xref=PMID:1934121; date=20101013 ||| term=name description, STErile; db_xref=PMID:1934121; date=20101013" ; GO "GO:0034064; Tor2-Mei2-Ste11 complex
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000747; conjugation with cellular fusion
GO:0051039; positive regulation of transcription, meiotic" ; primary_name "ste11" ; product "transcription factor Ste11" ;
chromosome2 GeneDB CDS 3985586 3986992 . + . mRNA SPBC32C12.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3986993 3987107 . + . mRNA SPBC32C12.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32C12.02" ; systematic_id "SPBC32C12.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3987658 3988014 . - . mRNA SPBC32C12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32C12.03c" ; systematic_id "SPBC32C12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3988015 3989286 . - . mRNA SPBC32C12.03c ; systematic_id "SPBC32C12.03c" ; colour "2" ; gene "ppk25 ||| SPBC32C12.03c" ; Alias "ppk25" ; db_xref "SPD:20/20D05" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk25" ; product "serine/threonine protein kinase Ppk25 (predicted)" ;
chromosome2 GeneDB CDS 3988015 3989286 . - . mRNA SPBC32C12.03c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3989285 3989528 . - . mRNA SPBC32C12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC32C12.03c" ; systematic_id "SPBC32C12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 3990321 3990421 . + . misc_feature unknown_3395 ; note "nominal overlap with cosmid SPBC3B9 and cosmid SPBC32C12" ;
chromosome2 GeneDB 5'-UTR 3990515 3990666 . + . mRNA SPBC3B9.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.01" ; systematic_id "SPBC3B9.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3990667 3991530 . + . mRNA SPBC3B9.01 ; db_xref "SPD:11/11E10" ; systematic_id "SPBC3B9.01" ; colour "7" ; GO "GO:0005829; cytosol
GO:0006412; protein biosynthesis
GO:0000774; adenyl-nucleotide exchange factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR101C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC3B9.01" ; product "Hsp70 nucleotide exchange factor (predicted)" ;
chromosome2 GeneDB CDS 3990667 3991530 . + . mRNA SPBC3B9.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 3991531 3991563 . + . mRNA SPBC3B9.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.01" ; systematic_id "SPBC3B9.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3991675 3991691 . - . mRNA SPBC3B9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.02c" ; systematic_id "SPBC3B9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3991692 3992837 . - . mRNA SPBC3B9.02c ; systematic_id "SPBC3B9.02c" ; colour "2" ; gene "cwf28 ||| SPBC3B9.02c" ; Alias "cwf28" ; db_xref "SPD:18/18B03" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YOR148C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cwf28" ; product "splicing factor Cwf28" ;
chromosome2 GeneDB CDS 3991692 3992837 . - . mRNA SPBC3B9.02c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 3992836 3992994 . - . mRNA SPBC3B9.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.02c" ; systematic_id "SPBC3B9.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 3993431 3993456 . + . mRNA SPBC3B9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.03" ; systematic_id "SPBC3B9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3993457 3995356 . + . mRNA SPBC3B9.03 ; db_xref "SPD:26/26E12" ; systematic_id "SPBC3B9.03" ; colour "7" ; GO "GO:0006614; SRP-dependent cotranslational protein targeting to membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005785; signal recognition particle receptor complex
GO:0005047; signal recognition particle binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR292C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC3B9.03" ; product "signal recognition particle receptor alpha subunit Srp101 (predicted)" ;
chromosome2 GeneDB CDS 3993457 3993657 . + . mRNA SPBC3B9.03 ; colour "7" ;
chromosome2 GeneDB CDS 3993836 3994996 . + . mRNA SPBC3B9.03 ; colour "7" ;
chromosome2 GeneDB CDS 3995075 3995356 . + . mRNA SPBC3B9.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 3993658 3993663 . + . misc_feature unknown_3396 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3993815 3993835 . + . misc_feature unknown_3397 ; colour "6" ; note "ttaacgcggttgaatttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3994997 3995002 . + . misc_feature unknown_3398 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3995063 3995074 . + . misc_feature unknown_3399 ; colour "6" ; note "ctaacataacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3995357 3995465 . + . mRNA SPBC3B9.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.03" ; systematic_id "SPBC3B9.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3995638 3996384 . + . mRNA SPBC3B9.04 ; db_xref "SPD:09/09B03" ; systematic_id "SPBC3B9.04" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR316W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC3B9.04" ; product "mitochondrial methyltransferase (predicted)" ;
chromosome2 GeneDB CDS 3995638 3996384 . + . mRNA SPBC3B9.04 ; colour "10" ;
chromosome2 GeneDB 5'-UTR 3996512 3996670 . + . mRNA SPBC3B9.21 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.21" ; systematic_id "SPBC3B9.21" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3996671 3997315 . + . mRNA SPBC3B9.21 ; systematic_id "SPBC3B9.21" ; colour "2" ; gene "dcp1 ||| SPBC3B9.21" ; Alias "dcp1" ; db_xref "SPD:07/07D05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15671491; date=19700101 ||| term=orthologous to S. cerevisiae YOL149W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000932; cytoplasmic mRNA processing body
GO:0005845; mRNA cap complex
GO:0005845; mRNA cap complex
GO:0000340; RNA 7-methylguanosine cap binding
GO:0030234; enzyme regulator activity
GO:0050072; m7G(5')pppN diphosphatase activity
GO:0050072; m7G(5')pppN diphosphatase activity
GO:0005515; protein binding
GO:0000290; deadenylation-dependent decapping
GO:0031087; deadenylation-independent decapping
GO:0000184; mRNA catabolism, nonsense-mediated decay" ; primary_name "dcp1" ; product "mRNA decapping complex regulatory subunit Dcp1" ; EC_number "3.6.1.30" ;
chromosome2 GeneDB CDS 3996671 3996805 . + . mRNA SPBC3B9.21 ; colour "2" ;
chromosome2 GeneDB CDS 3997067 3997315 . + . mRNA SPBC3B9.21 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 3997316 3997390 . + . mRNA SPBC3B9.21 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.21" ; systematic_id "SPBC3B9.21" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3997671 3998260 . + . mRNA SPBC3B9.05 ; db_xref "SPD:06/06D12" ; systematic_id "SPBC3B9.05" ; colour "7" ; GO "GO:0045041; protein import into mitochondrial intermembrane space
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CHY; date=19700101 ||| term=orthologous to S. cerevisiae YKL084W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC3B9.05" ; product "helper of TIM (predicted)" ;
chromosome2 GeneDB CDS 3997671 3997675 . + . mRNA SPBC3B9.05 ; colour "7" ;
chromosome2 GeneDB CDS 3997819 3998019 . + . mRNA SPBC3B9.05 ; colour "7" ;
chromosome2 GeneDB CDS 3998116 3998260 . + . mRNA SPBC3B9.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 3997676 3997681 . + . misc_feature unknown_3400 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3997805 3997818 . + . misc_feature unknown_3401 ; colour "6" ; note "ctaacagtttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3998020 3998025 . + . misc_feature unknown_3402 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 3998102 3998115 . + . misc_feature unknown_3403 ; colour "6" ; note "ctaacttgacaaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 3998261 3998438 . + . mRNA SPBC3B9.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.05" ; systematic_id "SPBC3B9.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 3998547 3998785 . - . mRNA SPBC3B9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.06c" ; systematic_id "SPBC3B9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 3998786 3999699 . - . mRNA SPBC3B9.06c ; systematic_id "SPBC3B9.06c" ; colour "2" ; db_xref "SPD:12/12F08" ; Alias "atg3" ; synonym "apg3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006612; protein targeting to vacuole
GO:0000045; autophagic vacuole formation
GO:0006501; C-terminal protein lipidation
GO:0032258; CVT pathway
GO:0019776; Atg8 ligase activity
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; primary_name "atg3" ; product "autophagy associated protein Atg3" ;
chromosome2 GeneDB CDS 3998786 3999393 . - . mRNA SPBC3B9.06c ; colour "2" ;
chromosome2 GeneDB CDS 3999439 3999553 . - . mRNA SPBC3B9.06c ; colour "2" ;
chromosome2 GeneDB CDS 3999595 3999699 . - . mRNA SPBC3B9.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 3999554 3999566 . - . misc_feature unknown_3404 ; colour "6" ; note "ttaacctggacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 3999589 3999594 . - . misc_feature unknown_3405 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 3999698 3999704 . - . mRNA SPBC3B9.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.06c" ; systematic_id "SPBC3B9.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4000475 4000536 . - . mRNA SPBC3B9.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.07c" ; systematic_id "SPBC3B9.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4000537 4001230 . - . mRNA SPBC3B9.07c ; systematic_id "SPBC3B9.07c" ; colour "2" ; gene "rpa43 ||| rpa21 ||| SPBC3B9.07c" ; Alias "rpa43" ; db_xref "SPD:40/40A05" ; synonym "rpa21" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0005736; DNA-directed RNA polymerase I complex
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR340C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpa43" ; product "DNA-directed RNA polymerase I complex subunit Rpa43" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB CDS 4000537 4000591 . - . mRNA SPBC3B9.07c ; colour "2" ;
chromosome2 GeneDB CDS 4000658 4000856 . - . mRNA SPBC3B9.07c ; colour "2" ;
chromosome2 GeneDB CDS 4000963 4001230 . - . mRNA SPBC3B9.07c ; colour "2" ;
chromosome2 GeneDB misc_feature 4000592 4000607 . - . misc_feature unknown_3406 ; colour "6" ; note "ctaacagttaatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4000652 4000657 . - . misc_feature unknown_3407 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4000857 4000870 . - . misc_feature unknown_3408 ; colour "6" ; note "ctaactatcactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4000957 4000962 . - . misc_feature unknown_3409 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4001229 4001244 . - . mRNA SPBC3B9.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.07c" ; systematic_id "SPBC3B9.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4001626 4001877 . - . mRNA SPBC3B9.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.08c" ; systematic_id "SPBC3B9.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4001878 4002653 . - . mRNA SPBC3B9.08c ; db_xref "SPD:09/09F05" ; systematic_id "SPBC3B9.08c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC3B9.08c" ; product "Mago-nashi homolog (predicted)" ; note "non-consensus gc donor" ;
chromosome2 GeneDB CDS 4001878 4002024 . - . mRNA SPBC3B9.08c ; colour "7" ;
chromosome2 GeneDB CDS 4002094 4002181 . - . mRNA SPBC3B9.08c ; colour "7" ;
chromosome2 GeneDB CDS 4002224 4002287 . - . mRNA SPBC3B9.08c ; colour "7" ;
chromosome2 GeneDB CDS 4002339 4002392 . - . mRNA SPBC3B9.08c ; colour "7" ;
chromosome2 GeneDB CDS 4002465 4002491 . - . mRNA SPBC3B9.08c ; colour "7" ;
chromosome2 GeneDB CDS 4002544 4002581 . - . mRNA SPBC3B9.08c ; colour "7" ;
chromosome2 GeneDB CDS 4002628 4002653 . - . mRNA SPBC3B9.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 4002025 4002041 . - . misc_feature unknown_3410 ; colour "6" ; note "ctaatataaactactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4002088 4002093 . - . misc_feature unknown_3411 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4002182 4002196 . - . misc_feature unknown_3412 ; colour "6" ; note "ctaactactatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4002218 4002223 . - . misc_feature unknown_3413 ; colour "6" ; note "gcaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4002288 4002304 . - . misc_feature unknown_3414 ; colour "6" ; note "ttaacaaagccttaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4002333 4002338 . - . misc_feature unknown_3415 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4002393 4002405 . - . misc_feature unknown_3416 ; colour "6" ; note "ctaattcaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4002459 4002464 . - . misc_feature unknown_3417 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4002492 4002510 . - . misc_feature unknown_3418 ; colour "6" ; note "ctaaccaaacatttgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4002538 4002543 . - . misc_feature unknown_3419 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4002582 4002595 . - . misc_feature unknown_3420 ; colour "6" ; note "ctaactgactgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4002622 4002627 . - . misc_feature unknown_3421 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4002652 4002673 . - . mRNA SPBC3B9.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.08c" ; systematic_id "SPBC3B9.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4002946 4003311 . + . mRNA SPBC3B9.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.09" ; systematic_id "SPBC3B9.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4003312 4004715 . + . mRNA SPBC3B9.09 ; systematic_id "SPBC3B9.09" ; colour "2" ; gene "SPBC3B9.09 ||| vps36" ; note "possible additional N-terminal exon" ; Alias "vps36" ; db_xref "SPD:44/44E03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-RBZ; date=19700101 ||| term=orthologous to S. cerevisiae YLR417W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000814; ESCRT II complex
GO:0045053; protein retention in Golgi
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport" ; primary_name "vps36" ; product "RBZ zinc finger protein Vps36" ;
chromosome2 GeneDB CDS 4003312 4004715 . + . mRNA SPBC3B9.09 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4004858 4004956 . + . mRNA SPBC3B9.10 ; ID "SPBC3B9.10" ; systematic_id "SPBC3B9.10" ; note "mRNA from SPD116" ;
chromosome2 GeneDB CDS_parts 4004957 4006028 . + . mRNA SPBC3B9.10 ; systematic_id "SPBC3B9.10" ; colour "7" ; gene "vti1 ||| SPBC3B9.10" ; Alias "vti1" ; db_xref "SPD:16/16E08" ; GO "GO:0006891; intra-Golgi vesicle-mediated transport
GO:0048278; vesicle docking
GO:0030173; integral to Golgi membrane
GO:0006896; Golgi to vacuole transport
GO:0045324; late endosome to vacuole transport
GO:0005484; SNAP receptor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR197C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vti1" ; product "SNARE Vti1 (predicted)" ;
chromosome2 GeneDB CDS 4004957 4004982 . + . mRNA SPBC3B9.10 ; colour "7" ;
chromosome2 GeneDB CDS 4005020 4005125 . + . mRNA SPBC3B9.10 ; colour "7" ;
chromosome2 GeneDB CDS 4005172 4005282 . + . mRNA SPBC3B9.10 ; colour "7" ;
chromosome2 GeneDB CDS 4005388 4005639 . + . mRNA SPBC3B9.10 ; colour "7" ;
chromosome2 GeneDB CDS 4005804 4005865 . + . mRNA SPBC3B9.10 ; colour "7" ;
chromosome2 GeneDB CDS 4005941 4006028 . + . mRNA SPBC3B9.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 4004983 4004988 . + . misc_feature unknown_3422 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4005009 4005019 . + . misc_feature unknown_3423 ; colour "6" ; note "ctaataattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4005126 4005131 . + . misc_feature unknown_3424 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4005161 4005171 . + . misc_feature unknown_3425 ; colour "6" ; note "ctaacttgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4005283 4005288 . + . misc_feature unknown_3426 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4005368 4005387 . + . misc_feature unknown_3427 ; colour "6" ; note "ctaacaattttctcgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4005640 4005645 . + . misc_feature unknown_3428 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4005791 4005803 . + . misc_feature unknown_3429 ; colour "6" ; note "ttaaccaaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4005866 4005871 . + . misc_feature unknown_3430 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4005925 4005940 . + . misc_feature unknown_3431 ; colour "6" ; note "ctaactcattttaaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4006029 4006201 . + . mRNA SPBC3B9.10 ; ID "SPBC3B9.10" ; systematic_id "SPBC3B9.10" ; note "mRNA from SPD116" ;
chromosome2 GeneDB CDS_parts 4006057 4006334 . - . mRNA SPBC3B9.22c ; systematic_id "SPBC3B9.22c" ; colour "2" ; gene "dad4 ||| SPBC3B9.22c" ; Alias "dad4" ; db_xref "SPD:52/52E03" ; GO "GO:0042729; DASH complex
GO:0007052; mitotic spindle organization and biogenesis
GO:0031134; sister chromatid biorientation" ; controlled_curation "term=orthologous to S. cerevisiae YDR320C-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "dad4" ; product "DASH complex subunit Dad4" ;
chromosome2 GeneDB CDS 4006057 4006170 . - . mRNA SPBC3B9.22c ; colour "2" ;
chromosome2 GeneDB CDS 4006230 4006334 . - . mRNA SPBC3B9.22c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4006333 4006355 . - . mRNA SPBC3B9.22c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.22c" ; systematic_id "SPBC3B9.22c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4006690 4006856 . - . mRNA SPBC3B9.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.11c" ; systematic_id "SPBC3B9.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4006857 4008027 . - . mRNA SPBC3B9.11c ; systematic_id "SPBC3B9.11c" ; colour "2" ; gene "ctf1 ||| SPBC3B9.11c" ; Alias "ctf1" ; db_xref "SPD:18/18E09" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0003723; RNA binding
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YGL044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ctf1" ; product "mRNA cleavage and polyadenylation specificity factor complex subunit Ctf1" ;
chromosome2 GeneDB CDS 4006857 4006967 . - . mRNA SPBC3B9.11c ; colour "2" ;
chromosome2 GeneDB CDS 4007005 4007954 . - . mRNA SPBC3B9.11c ; colour "2" ;
chromosome2 GeneDB CDS 4007997 4008027 . - . mRNA SPBC3B9.11c ; colour "2" ;
chromosome2 GeneDB misc_feature 4006968 4006979 . - . misc_feature unknown_3432 ; colour "6" ; note "ctaacaaaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4006999 4007004 . - . misc_feature unknown_3433 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4007955 4007968 . - . misc_feature unknown_3434 ; colour "6" ; note "ctaatctaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4007991 4007996 . - . misc_feature unknown_3435 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4008064 4008183 . + . mRNA SPBC3B9.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.12" ; systematic_id "SPBC3B9.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4008184 4008787 . + . mRNA SPBC3B9.12 ; systematic_id "SPBC3B9.12" ; colour "7" ; gene "SPBC3B9.12" ; Alias "trs23" ; db_xref "SPD:42/42D05" ; GO "GO:0030008; TRAPP complex
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR246W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TRAPPC4 ortholog; date=20090914" ; primary_name "trs23" ; product "TRAPP complex subunit Trs23 (predicted)" ;
chromosome2 GeneDB CDS 4008184 4008302 . + . mRNA SPBC3B9.12 ; colour "7" ;
chromosome2 GeneDB CDS 4008508 4008787 . + . mRNA SPBC3B9.12 ; colour "7" ;
chromosome2 GeneDB misc_feature 4008303 4008308 . + . misc_feature unknown_3436 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4008492 4008507 . + . misc_feature unknown_3437 ; colour "6" ; note "ttaaccactgagatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4008779 4008795 . - . mRNA SPBC3B9.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.13c" ; systematic_id "SPBC3B9.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4008796 4009384 . - . mRNA SPBC3B9.13c ; systematic_id "SPBC3B9.13c" ; colour "2" ; gene "rpp102 ||| rpp1-2 ||| SPBC3B9.13c" ; Alias "rpp102" ; db_xref "SPD:31/31F01" ; synonym "rpp1-2" ; GO "GO:0006414; translational elongation
GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL081C and YDL130W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpp102" ; product "60S acidic ribosomal protein Rpp1-2" ;
chromosome2 GeneDB CDS 4008796 4008819 . - . mRNA SPBC3B9.13c ; colour "2" ;
chromosome2 GeneDB CDS 4008937 4009176 . - . mRNA SPBC3B9.13c ; colour "2" ;
chromosome2 GeneDB CDS 4009316 4009384 . - . mRNA SPBC3B9.13c ; colour "2" ;
chromosome2 GeneDB misc_feature 4008820 4008834 . - . misc_feature unknown_3438 ; colour "6" ; note "ctaacttttttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4008931 4008936 . - . misc_feature unknown_3439 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4009177 4009192 . - . misc_feature unknown_3440 ; colour "6" ; note "ttaacagtatttctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4009310 4009315 . - . misc_feature unknown_3441 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB promoter 4009442 4009449 . - . promoter unknown_3442 ; colour "4" ; note "Homol D box" ;
chromosome2 GeneDB promoter 4009464 4009473 . - . promoter unknown_3443 ; colour "4" ; note "Homol E box" ;
chromosome2 GeneDB CDS_parts 4009482 4010772 . - . mRNA SPBC3B9.14c ; systematic_id "SPBC3B9.14c" ; colour "7" ; gene "SPBC3B9.14c ||| mrpl3" ; Alias "mrpl3" ; db_xref "SPD:22/22D06" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit
GO:0003725; double-stranded RNA binding
GO:0006396; RNA processing
GO:0004525; ribonuclease III activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl3" ; product "mitochondrial ribosomal protein subunit L3 (predicted)" ;
chromosome2 GeneDB CDS 4009482 4009637 . - . mRNA SPBC3B9.14c ; colour "7" ;
chromosome2 GeneDB CDS 4009909 4010169 . - . mRNA SPBC3B9.14c ; colour "7" ;
chromosome2 GeneDB CDS 4010209 4010772 . - . mRNA SPBC3B9.14c ; colour "7" ;
chromosome2 GeneDB misc_feature 4009638 4009649 . - . misc_feature unknown_3444 ; colour "6" ; note "ctaatactaactttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4009903 4009908 . - . misc_feature unknown_3445 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4010170 4010184 . - . misc_feature unknown_3446 ; colour "6" ; note "ctaatgtttttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4010203 4010208 . - . misc_feature unknown_3447 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4010771 4010868 . - . mRNA SPBC3B9.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.14c" ; systematic_id "SPBC3B9.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4011197 4011457 . - . mRNA SPBC3B9.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.15c" ; systematic_id "SPBC3B9.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4011458 4014775 . - . mRNA SPBC3B9.15c ; systematic_id "SPBC3B9.15c" ; colour "2" ; db_xref "SPD:30/30D02" ; Alias "scp1" ; synonym "scap" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060413 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060413 ||| term=disease associated, Niemann- Pick disease; db_xref=KOG:1933; date=20060918 ||| term=orthologous to S. cerevisiae YPL006W (KOGS); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, SREBP Cleavage activating Protein; cv=name_description; date=20100308 ||| term=phenotype, increased Sre1 cleavage; allele=F245R|Y247P|Y249N|R259H|A260V|K261I|G263L|L264P|F28 6L|V326R|F369R|L380R|F384VF385R|V388G|L389P|S390LD392E|I39 3P|R394P|R395L|E397PL398W; cv=phenotype; db_xref=PMID:18503029; date=20100308 ||| term=target is Sre1; db_xref=PMID:19520858; date=20100825" ; GO "GO:0032936; SREBP-SCAP complex
GO:0071458; endoplasmic reticulum membrane, cytosolic side
GO:0030173; integral to Golgi membrane
GO:0032810; sterol response element binding
GO:0032935; sterol sensor activity
GO:0006994; activation of transcription in response to sterol depletion
GO:0035437; maintence of protein localization in endoplasmic reticulum
GO:0006800; oxygen and reactive oxygen species metabolic process
GO:0070452; positive regulation of ergosterol biosynthetic process
GO:0071073; positive regulation of phospholipid biosynthetic process
GO:0019432; positive regulation of triglyceride biosynthetic process
GO:0050821; regulation of protein stability
GO:0071456; cellular response to hypoxia
GO:0035103; sterol regulatory element binding- protein cleavage" ; primary_name "scp1" ; product "Sre1 cleavage activating protein, Scap Scp1" ;
chromosome2 GeneDB CDS 4011458 4013789 . - . mRNA SPBC3B9.15c ; colour "2" ;
chromosome2 GeneDB CDS 4013847 4014775 . - . mRNA SPBC3B9.15c ; colour "2" ;
chromosome2 GeneDB misc_feature 4013790 4013801 . - . misc_feature unknown_3448 ; colour "6" ; note "ctaacttatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4013841 4013846 . - . misc_feature unknown_3449 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4014774 4014826 . - . mRNA SPBC3B9.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.15c" ; systematic_id "SPBC3B9.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4015268 4015356 . - . mRNA SPBC3B9.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.16c" ; systematic_id "SPBC3B9.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4015357 4018767 . - . mRNA SPBC3B9.16c ; systematic_id "SPBC3B9.16c" ; colour "2" ; gene "nup120 ||| SPBC3B9.16c" ; Alias "nup120" ; db_xref "SPD:30/30E02" ; GO "GO:0031080; Nup107-160 complex
; nuclear membrane
GO:0005643; nuclear pore
GO:0005643; nuclear pore
GO:0005515; protein binding
GO:0051301; cell division
GO:0000070; mitotic sister chromatid segregation
GO:0031081; nuclear pore distribution
GO:0006913; nucleocytoplasmic transport
GO:0016973; poly(A)+ mRNA export from nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15226438; date=19700101 ||| term=orthologous to S. cerevisiae YKL057C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "nup120" ; product "nucleoporin Nup120" ;
chromosome2 GeneDB CDS 4015357 4018767 . - . mRNA SPBC3B9.16c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4018766 4018845 . - . mRNA SPBC3B9.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.16c" ; systematic_id "SPBC3B9.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB repeat_region 4019659 4019822 . - . repeat_region unknown_3450 ; note "141/164 base match to X02819 mitochondrial" ;
chromosome2 GeneDB misc_feature 4019675 4019906 . + . misc_feature unknown_3451 ; db_xref "PMID:18488015" ; note "SPNG1922 from Solexa data. This is unlikey to be an RNA, it is a fragment of mitochondrial cob1 in the nuclear genome" ;
chromosome2 GeneDB repeat_region 4019846 4019937 . - . repeat_region unknown_3452 ; note "67/92 base match to X54421 /X02819S. pombe mitochondrial genome" ;
chromosome2 GeneDB CDS_parts 4020309 4020995 . + . mRNA SPBC3B9.17 ; systematic_id "SPBC3B9.17" ; colour "2" ; gene "isa2 ||| SPBC3B9.17" ; Alias "isa2" ; db_xref "SPD:08/08A01" ; GO "GO:0016226; iron-sulfur cluster assembly
GO:0005758; mitochondrial intermembrane space
GO:0006879; iron ion homeostasis
GO:0009102; biotin biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR067W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "isa2" ; product "iron-sulfur protein Isa2" ;
chromosome2 GeneDB CDS 4020309 4020754 . + . mRNA SPBC3B9.17 ; colour "2" ;
chromosome2 GeneDB CDS 4020824 4020995 . + . mRNA SPBC3B9.17 ; colour "2" ;
chromosome2 GeneDB misc_feature 4020755 4020760 . + . misc_feature unknown_3453 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4020808 4020823 . + . misc_feature unknown_3454 ; colour "6" ; note "ttgactaaatatctag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 4021202 4021622 . - . mRNA SPBC3B9.18c ; systematic_id "SPBC3B9.18c" ; colour "7" ; gene "vma7 ||| SPBC3B9.18c" ; Alias "vma7" ; db_xref "SPD:03/03D07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000221; proton-translocating V-type ATPase, V1 domain
GO:0000329; fungal-type vacuole membrane
GO:0005524; ATP binding
GO:0046961; proton-transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; primary_name "vma7" ; product "V-type ATPase V1 subunit F (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB CDS 4021202 4021428 . - . mRNA SPBC3B9.18c ; colour "7" ;
chromosome2 GeneDB CDS 4021487 4021622 . - . mRNA SPBC3B9.18c ; colour "7" ;
chromosome2 GeneDB misc_feature 4021429 4021449 . - . misc_feature unknown_3455 ; colour "6" ; note "ctaacttgctgttttatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4021481 4021486 . - . misc_feature unknown_3456 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4021621 4021870 . - . mRNA SPBC3B9.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.18c" ; systematic_id "SPBC3B9.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4022530 4022546 . + . mRNA SPBC3B9.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.19" ; systematic_id "SPBC3B9.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4022547 4023218 . + . mRNA SPBC3B9.19 ; systematic_id "SPBC3B9.19" ; colour "7" ; gene "SPBC3B9.19 ||| mge1" ; Alias "mge1" ; db_xref "SPD:07/07G03" ; GO "GO:0001405; presequence translocase-associated import motor
GO:0051082; unfolded protein binding
GO:0030150; protein import into mitochondrial matrix
GO:0000774; adenyl-nucleotide exchange factor activity
GO:0006457; protein folding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR232W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mge1" ; product "mitochondrial GrpE domain chaperone protein (predicted)" ;
chromosome2 GeneDB CDS 4022547 4023218 . + . mRNA SPBC3B9.19 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4023219 4023571 . + . mRNA SPBC3B9.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3B9.19" ; systematic_id "SPBC3B9.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 4024192 4027053 . + . misc_feature unknown_3457 ; note "nominal overlap with cosmid SPBC215 and cosmid SPBC3B9" ;
chromosome2 GeneDB 5'-UTR 4024341 4024571 . + . mRNA SPBC215.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.01" ; systematic_id "SPBC215.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4024572 4027076 . + . mRNA SPBC215.01 ; systematic_id "SPBC215.01" ; colour "7" ; gene "SPBC3B9.20 ||| SPBC215.01" ; Alias "SPBC3B9.20" ; db_xref "SPD:29/29B02" ; synonym "SPBC3B9.20" ; GO "GO:0005509; calcium ion binding
GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YGR100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "SPBC3B9.20" ; product "GTPase activating protein (predicted)" ;
chromosome2 GeneDB CDS 4024572 4027076 . + . mRNA SPBC215.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4027077 4027205 . + . mRNA SPBC215.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.01" ; systematic_id "SPBC215.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4027418 4028044 . + . mRNA SPBC215.02 ; systematic_id "SPBC215.02" ; colour "2" ; gene "bob1 ||| SPBC215.02" ; Alias "bob1" ; db_xref "SPD:07/07B07" ; synonym "gim5" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML094W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "bob1" ; product "prefoldin subunit 5 (predicted)" ;
chromosome2 GeneDB CDS 4027418 4027604 . + . mRNA SPBC215.02 ; colour "2" ;
chromosome2 GeneDB CDS 4027659 4027768 . + . mRNA SPBC215.02 ; colour "2" ;
chromosome2 GeneDB CDS 4027812 4027917 . + . mRNA SPBC215.02 ; colour "2" ;
chromosome2 GeneDB CDS 4027983 4028044 . + . mRNA SPBC215.02 ; colour "2" ;
chromosome2 GeneDB misc_feature 4027605 4027610 . + . misc_feature unknown_3458 ; colour "6" ; note "gtatag, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4027642 4027658 . + . misc_feature unknown_3459 ; colour "6" ; note "ctaactattgtcaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4027769 4027774 . + . misc_feature unknown_3460 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4027799 4027811 . + . misc_feature unknown_3461 ; colour "6" ; note "ctaacgacattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4027918 4027923 . + . misc_feature unknown_3462 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4027969 4027982 . + . misc_feature unknown_3463 ; colour "6" ; note "ctaattctctgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4028025 4028116 . - . mRNA SPBC215.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.03c" ; systematic_id "SPBC215.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4028045 4028301 . + . mRNA SPBC215.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.02" ; systematic_id "SPBC215.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4028117 4029559 . - . mRNA SPBC215.03c ; systematic_id "SPBC215.03c" ; colour "2" ; gene "csn1 ||| SPBC215.03c" ; note "N-terminal exon possibly incorrect" ; Alias "csn1" ; db_xref "SPD:23/23C05" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11504566; date=20100708 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008180; signalosome
GO:0010388; cullin deneddylation
GO:0030163; protein catabolism
GO:0060625; regulation of protein deneddylation
GO:0090329; regulation of DNA-dependent DNA replication
GO:0051445; regulation of progression through meiotic cell cycle
GO:0006974; response to DNA damage stimulus" ; primary_name "csn1" ; product "COP9/signalosome complex subunit Csn1" ;
chromosome2 GeneDB CDS 4028117 4028305 . - . mRNA SPBC215.03c ; colour "2" ;
chromosome2 GeneDB CDS 4028347 4029090 . - . mRNA SPBC215.03c ; colour "2" ;
chromosome2 GeneDB CDS 4029165 4029439 . - . mRNA SPBC215.03c ; colour "2" ;
chromosome2 GeneDB CDS 4029499 4029559 . - . mRNA SPBC215.03c ; colour "2" ;
chromosome2 GeneDB misc_feature 4028306 4028318 . - . misc_feature unknown_3464 ; colour "6" ; note "ctaactttataag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4028341 4028346 . - . misc_feature unknown_3465 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4029091 4029103 . - . misc_feature unknown_3466 ; colour "6" ; note "ctaacaactttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4029159 4029164 . - . misc_feature unknown_3467 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4029440 4029454 . - . misc_feature unknown_3468 ; colour "6" ; note "ttcacagtttcatag, splice branch and acceptor, NOTE: non-consensus branch sequence" ;
chromosome2 GeneDB misc_feature 4029493 4029498 . - . misc_feature unknown_3469 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4029558 4029569 . - . mRNA SPBC215.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.03c" ; systematic_id "SPBC215.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4030555 4030862 . + . mRNA SPBC215.04 ; systematic_id "SPBC215.04" ; colour "2" ; gene "git11 ||| SPBC215.04" ; Alias "git11" ; db_xref "SPD:31/31C05" ; GO "GO:0045014; negative regulation of transcription by glucose
GO:0019933; cAMP-mediated signaling
GO:0005886; plasma membrane
GO:0005515; protein binding
GO:0005834; heterotrimeric G-protein complex
GO:0007189; G-protein signaling, adenylate cyclase activating pathway
GO:0023052; signalling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505 ||| term=species distribution, conserved in Fungi; date=20100919 ||| term=species distribution, conserved in Eukaryotes; date=20100919 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100919 ||| term=warning, is not functional ortholog of S. cerevisiae YJR086W; date=20100919 ||| term=orthologous to S. cerevisiae YJR086W; date=20100919" ; primary_name "git11" ; product "heterotrimeric G protein gamma subunit Git11" ;
chromosome2 GeneDB CDS 4030555 4030610 . + . mRNA SPBC215.04 ; colour "2" ;
chromosome2 GeneDB CDS 4030700 4030862 . + . mRNA SPBC215.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 4030611 4030616 . + . misc_feature unknown_3470 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 4030611 4030699 . + . intron SPBC215.04 ; systematic_id "SPBC215.04" ; note "confirmed by cDNA" ;
chromosome2 GeneDB misc_feature 4030685 4030699 . + . misc_feature unknown_3471 ; colour "6" ; note "ctaactgaactttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4030863 4031385 . + . mRNA SPBC215.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.04" ; systematic_id "SPBC215.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 4031743 4031816 . + . tRNA SPBTRNAASN.03 ; systematic_id "SPBTRNAASN.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033449; GTT codon-amino acid adaptor activity" ; gene "SPBTRNAASN.03" ; product "tRNA Asparagine" ; note "tRNA Asn anticodon GTT" ;
chromosome2 GeneDB misc_RNA 4032744 4033172 . + . misc_RNA SPNCRNA.435 ; db_xref "PMID:18488015" ; synonym "SPNG1926" ; systematic_id "SPNCRNA.435" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB misc_RNA 4033337 4035308 . + . misc_RNA SPNCRNA.436 ; db_xref "PMID:18488015" ; synonym "SPNG1927" ; systematic_id "SPNCRNA.436" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| longest ORF with methionine is 84 amino acids" ;
chromosome2 GeneDB 5'-UTR 4035580 4035813 . + . mRNA SPBC215.05 ; ID "SPBC215.05" ; systematic_id "SPBC215.05" ; note "mRNA from AU013069" ;
chromosome2 GeneDB CDS_parts 4035814 4036971 . + . mRNA SPBC215.05 ; systematic_id "SPBC215.05" ; colour "2" ; gene "gpd1 ||| SPBC215.05" ; Alias "gpd1" ; db_xref "SPD:32/32E11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=gene expression, expression induced by osmotic stress; db_xref=PMID:8825100; cv=gene_ex; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0005737; cytoplasm
GO:0004367; glycerol-3-phosphate dehydrogenase (NAD+) activity
GO:0006116; NADH oxidation
GO:0009992; cellular osmoregulation
GO:0006114; glycerol biosynthesis
GO:0006970; response to osmotic stress
GO:0006970; response to osmotic stress" ; primary_name "gpd1" ; product "glycerol-3-phosphate dehydrogenase Gpd1" ; EC_number "1.1.1.8" ;
chromosome2 GeneDB CDS 4035814 4036971 . + . mRNA SPBC215.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4036972 4037342 . + . mRNA SPBC215.05 ; ID "SPBC215.05" ; systematic_id "SPBC215.05" ; note "mRNA from AU010093" ;
chromosome2 GeneDB misc_feature 4037195 4037237 . + . misc_feature unknown_3472 ; note "dinucleotide repeat GT" ;
chromosome2 GeneDB 3'-UTR 4038038 4038118 . - . mRNA SPBC215.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.06c" ; systematic_id "SPBC215.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4038119 4038655 . - . mRNA SPBC215.06c ; db_xref "SPD:05/05D09" ; systematic_id "SPBC215.06c" ; colour "10" ; GO "GO:0005730; nucleolus
GO:0003677; DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YCR087C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human LYAR ortholog; date=20100727" ; gene "SPBC215.06c" ; product "human LYHRT homolog" ;
chromosome2 GeneDB CDS 4038119 4038655 . - . mRNA SPBC215.06c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 4038654 4038862 . - . mRNA SPBC215.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.06c" ; systematic_id "SPBC215.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4039191 4039415 . - . mRNA SPBC215.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.07c" ; systematic_id "SPBC215.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4039416 4041122 . - . mRNA SPBC215.07c ; db_xref "SPD:35/35E04" ; systematic_id "SPBC215.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR455W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005634; nucleus
GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0034770; histone H4-K20 methylation
GO:0035064; methylated histone residue binding" ; gene "SPBC215.07c ||| pdp2" ; product "PWWP domain protein (predicted)" ; reserved_name "pdp2" ;
chromosome2 GeneDB CDS 4039416 4041122 . - . mRNA SPBC215.07c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4041121 4041170 . - . mRNA SPBC215.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.07c" ; systematic_id "SPBC215.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4041506 4041735 . - . mRNA SPBC215.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.08c" ; systematic_id "SPBC215.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4041736 4045218 . - . mRNA SPBC215.08c ; systematic_id "SPBC215.08c" ; colour "7" ; gene "arg4 ||| SPBC215.08c" ; Alias "arg4" ; db_xref "KEGG:MAP00240; ||| KEGG:MAP00251; ||| SPD:30/30E04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR109C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006526; arginine biosynthesis
GO:0004088; carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0005524; ATP binding
GO:0005951; carbamoyl-phosphate synthase complex
GO:0000050; urea cycle" ; primary_name "arg4" ; product "arginine specific carbamoyl-phosphate synthase Arg4 (predicted)" ; EC_number "6.3.5.5" ;
chromosome2 GeneDB CDS 4041736 4045218 . - . mRNA SPBC215.08c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4045217 4045410 . - . mRNA SPBC215.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.08c" ; systematic_id "SPBC215.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4045900 4045978 . - . mRNA SPBC215.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.09c" ; systematic_id "SPBC215.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4045979 4047226 . - . mRNA SPBC215.09c ; systematic_id "SPBC215.09c" ; colour "7" ; gene "erg10 ||| SPBC215.09c" ; Alias "erg10" ; db_xref "SPD:19/19H09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, metabolic acidosis; date=20060725 ||| term=orthologous to S. cerevisiae YPL028W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006696; ergosterol biosynthesis
GO:0003985; acetyl-CoA C-acetyltransferase activity
GO:0005829; cytosol" ; primary_name "erg10" ; product "acetyl-CoA C-acetyltransferase Erg10 (predicted)" ; EC_number "2.3.1.9" ; reserved_name "erg10" ;
chromosome2 GeneDB CDS 4045979 4047155 . - . mRNA SPBC215.09c ; colour "7" ;
chromosome2 GeneDB CDS 4047216 4047226 . - . mRNA SPBC215.09c ; colour "7" ;
chromosome2 GeneDB misc_feature 4047156 4047173 . + . misc_feature unknown_3473 ; colour "6" ; note "ctaacattttctttatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4047156 4047215 . - . intron SPBC215.09c ; systematic_id "SPBC215.09c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4047211 4047215 . - . misc_feature unknown_3474 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4047225 4047280 . - . mRNA SPBC215.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.09c" ; systematic_id "SPBC215.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 4047404 4047754 . + . LTR unknown_3475 ; colour "4" ; note "tf2-type LTR" ;
chromosome2 GeneDB 5'-UTR 4048926 4049178 . + . mRNA SPBC215.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.10" ; systematic_id "SPBC215.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4049179 4050087 . + . mRNA SPBC215.10 ; db_xref "SPD:12/12E11" ; systematic_id "SPBC215.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=haloacid dehalogenase-like hydrolase; date=20080529 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBC215.10" ; product "haloacid dehalogenase-like hydrolase" ;
chromosome2 GeneDB CDS 4049179 4050087 . + . mRNA SPBC215.10 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 4050088 4050137 . + . mRNA SPBC215.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.10" ; systematic_id "SPBC215.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4050410 4050461 . - . mRNA SPBC215.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.11c" ; systematic_id "SPBC215.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4050462 4051382 . - . mRNA SPBC215.11c ; db_xref "SPD:12/12G12" ; systematic_id "SPBC215.11c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBC215.11c" ; product "aldo/keto reductase, unknown biological role" ;
chromosome2 GeneDB CDS 4050462 4051382 . - . mRNA SPBC215.11c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 4051381 4051402 . - . mRNA SPBC215.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.11c" ; systematic_id "SPBC215.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4052558 4052603 . + . mRNA SPBC215.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.12" ; systematic_id "SPBC215.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4052604 4055696 . + . mRNA SPBC215.12 ; systematic_id "SPBC215.12" ; colour "2" ; gene "cwf10 ||| spef2 ||| snu114 ||| SPBC215.12" ; Alias "cwf10" ; db_xref "SPD:30/30A03" ; synonym "spef2 ||| snu114" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005681; spliceosome complex
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YKL173W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf10" ; product "GTPase Cwf10 (predicted)" ;
chromosome2 GeneDB CDS 4052604 4052626 . + . mRNA SPBC215.12 ; colour "2" ;
chromosome2 GeneDB CDS 4052671 4053030 . + . mRNA SPBC215.12 ; colour "2" ;
chromosome2 GeneDB CDS 4053069 4053420 . + . mRNA SPBC215.12 ; colour "2" ;
chromosome2 GeneDB CDS 4053480 4055696 . + . mRNA SPBC215.12 ; colour "2" ;
chromosome2 GeneDB misc_feature 4052627 4052632 . + . misc_feature unknown_3476 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4052659 4052670 . + . misc_feature unknown_3477 ; colour "6" ; note "ctaactcgccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4053031 4053036 . + . misc_feature unknown_3478 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4053056 4053068 . + . misc_feature unknown_3479 ; colour "6" ; note "ctaactttttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4053421 4053426 . + . misc_feature unknown_3480 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4053466 4053479 . + . misc_feature unknown_3481 ; colour "6" ; note "ctaacatgctttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4055697 4055749 . + . mRNA SPBC215.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.12" ; systematic_id "SPBC215.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4056075 4056167 . + . mRNA SPBC215.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.13" ; systematic_id "SPBC215.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4056168 4057772 . + . mRNA SPBC215.13 ; db_xref "SPD:45/45C10" ; systematic_id "SPBC215.13" ; colour "8" ; GO "GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; gene "SPBC215.13" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 4056168 4057772 . + . mRNA SPBC215.13 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 4057773 4058115 . + . mRNA SPBC215.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.13" ; systematic_id "SPBC215.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4058224 4058393 . - . mRNA SPBC215.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.14c" ; systematic_id "SPBC215.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4058394 4059074 . - . mRNA SPBC215.14c ; systematic_id "SPBC215.14c" ; colour "2" ; gene "vps20 ||| SPBC215.14c" ; Alias "vps20" ; db_xref "SPD:07/07H06" ; GO "GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport
GO:0000815; ESCRT III complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps20" ; product "vacuolar sorting protein Vps20" ;
chromosome2 GeneDB CDS 4058394 4059074 . - . mRNA SPBC215.14c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4059073 4059266 . - . mRNA SPBC215.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.14c" ; systematic_id "SPBC215.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 4059411 4059962 . + . misc_RNA SPNCRNA.437 ; db_xref "PMID:18488015" ; synonym "SPNG1929" ; systematic_id "SPNCRNA.437" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 4060033 4061002 . + . mRNA SPBC215.15 ; systematic_id "SPBC215.15" ; colour "2" ; gene "sec13 ||| SPBC215.15" ; Alias "sec13" ; db_xref "SPD:13/13G12" ; GO "GO:0030127; COPII vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
; nuclear pore
GO:0006886; intracellular protein transport
GO:0005737; cytoplasm
GO:0006999; nuclear pore organization and biogenesis
GO:0005886; plasma membrane" ; controlled_curation "term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR208W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11821054; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec13" ; product "COPII-coated vesicle component Sec13" ;
chromosome2 GeneDB CDS 4060033 4060068 . + . mRNA SPBC215.15 ; colour "2" ;
chromosome2 GeneDB CDS 4060145 4061002 . + . mRNA SPBC215.15 ; colour "2" ;
chromosome2 GeneDB misc_feature 4060069 4060074 . + . misc_feature unknown_3482 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4060130 4060144 . + . misc_feature unknown_3483 ; colour "6" ; note "ctaacttttacctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4060974 4061002 . + . misc_feature unknown_3484 ; note "SPBC215.15, see c215 for full length CDS" ;
chromosome2 GeneDB misc_feature 4060974 4061968 . + . misc_feature unknown_3485 ; note "nominal overlap with cosmid SPBC215 and cosmid SPBC1347" ;
chromosome2 GeneDB 3'-UTR 4061003 4061137 . + . mRNA SPBC215.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC215.15" ; systematic_id "SPBC215.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4061351 4064158 . - . mRNA SPBC1347.01c ; systematic_id "SPBC1347.01c" ; colour "7" ; gene "SPBC215.16c ||| SPBC1347.01c ||| rev1" ; Alias "rev1" ; db_xref "SPD:29/29E01" ; synonym "SPBC215.16c" ; GO "GO:0006281; DNA repair
GO:0017125; deoxycytidyl transferase activity
GO:0005634; nucleus
GO:0003887; DNA-directed DNA polymerase activity
GO:0005739; mitochondrion
GO:0043504; mitochondrial DNA repair" ; controlled_curation "term=orthologous to S. cerevisiae YOR346W; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rev1" ; product "deoxycytidyl transferase Rev1 (predicted)" ;
chromosome2 GeneDB CDS 4061351 4064158 . - . mRNA SPBC1347.01c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4064548 4064556 . + . mRNA SPBC1347.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.02" ; systematic_id "SPBC1347.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4064557 4065642 . + . mRNA SPBC1347.02 ; systematic_id "SPBC1347.02" ; colour "7" ; gene "fkbp39 ||| SPBC1347.02" ; db_xref "SPD:32/32D11" ; Alias "fkbp39" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=orthologous to S. cerevisiae YLR449W and YML074C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; primary_name "fkbp39" ; product "FKBP-type peptidyl-prolyl cis-trans isomerase (predicted)" ; EC_number "5.2.1.8" ;
chromosome2 GeneDB CDS 4064557 4065642 . + . mRNA SPBC1347.02 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4065643 4065868 . + . mRNA SPBC1347.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.02" ; systematic_id "SPBC1347.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4066294 4067342 . + . mRNA SPBC1347.03 ; systematic_id "SPBC1347.03" ; colour "2" ; note "possibly a protein kinase inhibitor as related to S. cerevisiae LSP1 and PIL1" ; db_xref "SPD:32/32D04" ; Alias "meu14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20070103 ||| term=gene expression, transcriptionally regulated by Mei4; db_xref=PMID:12759375; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPCC736.15 and SPAC3C7.02c; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; GO "GO:0070056; prospore membrane leading edge
GO:0031321; prospore formation
GO:0030476; ascospore wall assembly
GO:0070057; prospore membrane spindle pole body attachment site" ; primary_name "meu14" ; product "sporulation protein Meu14" ;
chromosome2 GeneDB CDS 4066294 4066375 . + . mRNA SPBC1347.03 ; colour "2" ;
chromosome2 GeneDB CDS 4066417 4067342 . + . mRNA SPBC1347.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 4066376 4066381 . + . misc_feature unknown_3486 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4066405 4066416 . + . misc_feature unknown_3487 ; colour "6" ; note "ttaatgacatag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 4067792 4068029 . + . mRNA SPBC1347.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.04" ; systematic_id "SPBC1347.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4068030 4069073 . + . mRNA SPBC1347.04 ; systematic_id "SPBC1347.04" ; colour "7" ; gene "SPBC1347.04 ||| tim54" ; Alias "tim54" ; db_xref "SPD:15/15G12" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0042721; mitochondrial inner membrane protein insertion complex
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL054W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "tim54" ; product "TIM22 inner membrane protein import complex subunit Tim54 (predicted)" ;
chromosome2 GeneDB CDS 4068030 4069073 . + . mRNA SPBC1347.04 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4069074 4069112 . + . mRNA SPBC1347.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.04" ; systematic_id "SPBC1347.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4069163 4069284 . - . mRNA SPBC1347.05c ; ID "SPBC1347.05c" ; systematic_id "SPBC1347.05c" ; note "mRNA from AB029547" ;
chromosome2 GeneDB CDS_parts 4069285 4070540 . - . mRNA SPBC1347.05c ; systematic_id "SPBC1347.05c" ; colour "7" ; gene "SPBC1347.05c" ; note "new C-terminal exon 11 Oct 2002" ; db_xref "SPD:19/19D01" ; GO "GO:0030544; Hsp70 protein binding
GO:0030433; ER-associated protein catabolism
GO:0034975; protein folding in the endoplasmic reticulum
GO:0034620; cellular response to unfolded protein
GO:0005788; endoplasmic reticulum lumen" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR214W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; date=20021010" ; product "DNAJ domain protein Scj1 (predicted)" ;
chromosome2 GeneDB CDS 4069285 4069334 . - . mRNA SPBC1347.05c ; colour "7" ;
chromosome2 GeneDB CDS 4069390 4070366 . - . mRNA SPBC1347.05c ; colour "7" ;
chromosome2 GeneDB CDS 4070422 4070540 . - . mRNA SPBC1347.05c ; colour "7" ;
chromosome2 GeneDB intron 4069335 4069389 . - . intron SPBC1347.05c ; systematic_id "SPBC1347.05c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4070367 4070382 . - . misc_feature unknown_3488 ; colour "6" ; note "ctaataaatgttctag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4070367 4070421 . - . intron SPBC1347.05c ; systematic_id "SPBC1347.05c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4070416 4070421 . - . misc_feature unknown_3489 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4070541 4070708 . - . mRNA SPBC1347.05c ; ID "SPBC1347.05c" ; systematic_id "SPBC1347.05c" ; note "mRNA from AB029547" ;
chromosome2 GeneDB misc_RNA 4071111 4071304 . + . misc_RNA SPNCRNA.105 ; db_xref "EMBL:AU013717" ; systematic_id "SPNCRNA.105" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU013717; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU013717; date=20050412" ; gene "SPNCRNA.105" ; product "non-coding RNA (predicted)" ; note "mRNA from AU013717, not attached to a CDS" ;
chromosome2 GeneDB 3'-UTR 4071555 4071710 . - . mRNA SPBC1347.06c ; ID "SPBC1347.06c" ; systematic_id "SPBC1347.06c" ; note "mRNA from SP06929" ;
chromosome2 GeneDB CDS_parts 4071711 4073134 . - . mRNA SPBC1347.06c ; systematic_id "SPBC1347.06c" ; colour "2" ; gene "cki1 ||| SPBC1347.06c" ; Alias "cki1" ; db_xref "SPD:44/44F02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CK2 subfamily; db_xref=PMID:8125945; date=19700101 ||| term=orthologous to S. cerevisiae YNL154C and YHR135C and YER123W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Its3; db_xref=PMID:9873063; date=20091231" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0030100; regulation of endocytosis
GO:0090215; regulation of 1-phosphatidylinositol-4- phosphate 5-kinase activity" ; primary_name "cki1" ; product "serine/threonine protein kinase Cki1" ; EC_number "2.7.1.-" ;
chromosome2 GeneDB CDS 4071711 4072925 . - . mRNA SPBC1347.06c ; colour "2" ;
chromosome2 GeneDB CDS 4073009 4073134 . - . mRNA SPBC1347.06c ; colour "2" ;
chromosome2 GeneDB misc_feature 4072926 4072945 . - . misc_feature unknown_3490 ; colour "6" ; note "ctgattgattttgcttatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4072926 4073008 . - . intron SPBC1347.06c ; db_xref "EMBL:U06929" ; systematic_id "SPBC1347.06c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4073003 4073008 . - . misc_feature unknown_3491 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4073135 4073235 . - . mRNA SPBC1347.06c ; ID "SPBC1347.06c" ; db_xref "EMBL:U06929" ; systematic_id "SPBC1347.06c" ; note "mRNA from SP06929" ;
chromosome2 GeneDB intron 4073236 4073278 . - . intron unknown_3492 ; note "confirmed intron" ;
chromosome2 GeneDB 5'-UTR 4073730 4073911 . + . mRNA SPBC1347.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.07" ; systematic_id "SPBC1347.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4073912 4074716 . + . mRNA SPBC1347.07 ; systematic_id "SPBC1347.07" ; colour "7" ; gene "SPBC1347.07 ||| rex2" ; Alias "rex2" ; db_xref "SPD:10/10C02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008408; 3'-5' exonuclease activity
GO:0006364; rRNA processing
GO:0005739; mitochondrion" ; primary_name "rex2" ; product "RNA exonuclease (predicted)" ; EC_number "3.1.-.-" ;
chromosome2 GeneDB CDS 4073912 4073951 . + . mRNA SPBC1347.07 ; colour "7" ;
chromosome2 GeneDB CDS 4074033 4074118 . + . mRNA SPBC1347.07 ; colour "7" ;
chromosome2 GeneDB CDS 4074238 4074303 . + . mRNA SPBC1347.07 ; colour "7" ;
chromosome2 GeneDB CDS 4074366 4074716 . + . mRNA SPBC1347.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 4073952 4073957 . + . misc_feature unknown_3493 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4074018 4074032 . + . misc_feature unknown_3494 ; colour "6" ; note "ctaatatgattgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4074119 4074124 . + . misc_feature unknown_3495 ; colour "6" ; note "gtaact, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4074223 4074237 . + . misc_feature unknown_3496 ; colour "6" ; note "ctaactaaggcgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4074226 4074839 . - . mRNA SPBC1347.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.08c" ; systematic_id "SPBC1347.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 4074304 4074309 . + . misc_feature unknown_3497 ; colour "6" ; note "gttact, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4074346 4074365 . + . misc_feature unknown_3498 ; colour "6" ; note "ctaataaacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4074717 4074995 . + . mRNA SPBC1347.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.07" ; systematic_id "SPBC1347.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4074840 4075721 . - . mRNA SPBC1347.08c ; db_xref "SPD:12/12A01" ; systematic_id "SPBC1347.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR279W; attribution=pers. comm. C. Chahwan; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Aicardi- Goutieres syndrome; date=20100505" ; colour "7" ; GO "GO:0004523; ribonuclease H activity
GO:0043137; DNA replication, removal of RNA primer
GO:0032299; RNase H2 complex
GO:0032299; ribonuclease H2 complex" ; gene "SPBC1347.08c" ; product "ribonuclease H2 complex subunit (predicted)" ;
chromosome2 GeneDB CDS 4074840 4075721 . - . mRNA SPBC1347.08c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4075720 4076043 . - . mRNA SPBC1347.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.08c" ; systematic_id "SPBC1347.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4077200 4077449 . + . mRNA SPBC1347.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.09" ; systematic_id "SPBC1347.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4077450 4078304 . + . mRNA SPBC1347.09 ; db_xref "SPD:11/11C09" ; systematic_id "SPBC1347.09" ; colour "7" ; GO "GO:0004395; hexaprenyldihydroxybenzoate methyltransferase activity
GO:0006744; ubiquinone biosynthesis
GO:0019898; extrinsic to membrane
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL096C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1347.09" ; product "hexaprenyldihydroxybenzoate methyltransferase (predicted)" ;
chromosome2 GeneDB CDS 4077450 4078304 . + . mRNA SPBC1347.09 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4078305 4078738 . + . mRNA SPBC1347.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.09" ; systematic_id "SPBC1347.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4079071 4079438 . + . mRNA SPBC1347.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.10" ; systematic_id "SPBC1347.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4079439 4081220 . + . mRNA SPBC1347.10 ; systematic_id "SPBC1347.10" ; colour "2" ; gene "cdc23 ||| mcm10 ||| SPBC1347.10" ; Alias "cdc23" ; db_xref "SPD:33/33D07" ; synonym "mcm10" ; GO "GO:0000790; nuclear chromatin
GO:0043596; replication fork (sensu Eukaryota)
GO:0003896; DNA primase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003697; single-stranded DNA binding
; DNA replication initiation
GO:0006271; DNA strand elongation
GO:0005515; protein binding
GO:0007090; regulation of S-phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9745018; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:6943408; date=20100705 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=OB fold; date=19700101 ||| term=orthologous to S. cerevisiae YIL150C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cdc23" ; product "MCM-associated protein Mcm10" ;
chromosome2 GeneDB CDS 4079439 4081220 . + . mRNA SPBC1347.10 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4081874 4082206 . + . mRNA SPBC1347.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.11" ; systematic_id "SPBC1347.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4082207 4082527 . + . mRNA SPBC1347.11 ; systematic_id "SPBC1347.11" ; colour "2" ; db_xref "SPD:01/01F12" ; Alias "sro1" ; GO "GO:0005739; mitochondrion
GO:0045454; cell redox homeostasis
GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; db_xref=PMID:18410345; date=19700101 ||| term=target of SAPK pathway; db_xref=PMID:18410345; date=20080416 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:18410345; cv=gene_ex; date=20080416 ||| term=target of Pka1; qualifier=predicted; db_xref=PMID:18410345; date=20080416 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18410345; date=20080416 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, Stress Responsive Orphan; db_xref=PMID:18410345; cv=name_description; date=20100123" ; primary_name "sro1" ; product "stress responsive orphan 1" ;
chromosome2 GeneDB CDS 4082207 4082527 . + . mRNA SPBC1347.11 ; colour "2" ;
chromosome2 GeneDB CDS_parts 4082279 4082644 . - . mRNA SPBC1347.14c ; db_xref "SPD:52/52E09" ; systematic_id "SPBC1347.14c" ; colour "6" ; gene "SPBC1347.14c" ; product "dubious" ;
chromosome2 GeneDB CDS 4082279 4082644 . - . mRNA SPBC1347.14c ; colour "6" ;
chromosome2 GeneDB 3'-UTR 4082528 4083139 . + . mRNA SPBC1347.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.11" ; systematic_id "SPBC1347.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4083937 4085227 . + . mRNA SPBC1347.12 ; systematic_id "SPBC1347.12" ; colour "7" ; gene "SPBC1347.12 ||| arp1" ; Alias "arp1" ; db_xref "SPD:22/22D07" ; GO "GO:0005869; dynactin complex
GO:0000132; establishment of mitotic spindle orientation
GO:0007097; nuclear migration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR129C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ACTR1A ortholog; date=20100702" ; primary_name "arp1" ; product "centractin family actin-like protein Arp1 (predicted)" ;
chromosome2 GeneDB CDS 4083937 4083953 . + . mRNA SPBC1347.12 ; colour "7" ;
chromosome2 GeneDB CDS 4083997 4084027 . + . mRNA SPBC1347.12 ; colour "7" ;
chromosome2 GeneDB CDS 4084097 4084161 . + . mRNA SPBC1347.12 ; colour "7" ;
chromosome2 GeneDB CDS 4084201 4085227 . + . mRNA SPBC1347.12 ; colour "7" ;
chromosome2 GeneDB misc_feature 4083954 4083959 . + . misc_feature unknown_3499 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4083983 4083996 . + . misc_feature unknown_3500 ; colour "6" ; note "ttgacgcgttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4084028 4084033 . + . misc_feature unknown_3501 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4084080 4084096 . + . misc_feature unknown_3502 ; colour "6" ; note "ttgacaaaactatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4084162 4084167 . + . misc_feature unknown_3503 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4084190 4084200 . + . misc_feature unknown_3504 ; colour "6" ; note "ctaatatacag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 4085349 4086438 . - . mRNA SPBC1347.13c ; db_xref "SPD:17/17A07" ; systematic_id "SPBC1347.13c" ; colour "7" ; GO "GO:0008989; rRNA (guanine-N1-)-methyltransferase activity
GO:0000154; rRNA modification
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR201C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1347.13c" ; product "ribose methyltransferase (predicted)" ;
chromosome2 GeneDB CDS 4085349 4085476 . - . mRNA SPBC1347.13c ; colour "7" ;
chromosome2 GeneDB CDS 4085520 4085793 . - . mRNA SPBC1347.13c ; colour "7" ;
chromosome2 GeneDB CDS 4085840 4086055 . - . mRNA SPBC1347.13c ; colour "7" ;
chromosome2 GeneDB CDS 4086151 4086438 . - . mRNA SPBC1347.13c ; colour "7" ;
chromosome2 GeneDB misc_feature 4085477 4085490 . - . misc_feature unknown_3505 ; colour "6" ; note "ctaactttataaag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4085477 4085519 . - . intron SPBC1347.13c ; systematic_id "SPBC1347.13c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4085514 4085519 . - . misc_feature unknown_3506 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4085794 4085808 . - . misc_feature unknown_3507 ; colour "6" ; note "ctaattgggtttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4085834 4085839 . - . misc_feature unknown_3508 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4085872 4086438 . - . misc_feature unknown_3509 ; note "SPBC1347.13- see c1347 for complete CDS" ;
chromosome2 GeneDB misc_feature 4085872 4086903 . - . misc_feature unknown_3510 ; note "nominal overlap with cosmid SPBC56F2, EM:AL023288 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 4085872 4086903 . + . misc_feature unknown_3511 ; note "nominal overlap with cosmid SPBC1347, EM:AL035548 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 4086056 4086076 . - . misc_feature unknown_3512 ; colour "6" ; note "gtattctcactaacatgttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4086145 4086150 . - . misc_feature unknown_3513 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4086437 4086495 . - . mRNA SPBC1347.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1347.13c" ; systematic_id "SPBC1347.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4086821 4086878 . - . mRNA SPBC56F2.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.12" ; systematic_id "SPBC56F2.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4086879 4088093 . - . mRNA SPBC56F2.12 ; systematic_id "SPBC56F2.12" ; colour "7" ; gene "SPBC56F2.12 ||| ilv5" ; Alias "ilv5" ; db_xref "SPD:19/19C11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR355C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004455; ketol-acid reductoisomerase activity
GO:0000002; mitochondrial genome maintenance
GO:0005739; mitochondrion
GO:0009099; valine biosynthesis
GO:0009097; isoleucine biosynthesis
GO:0006551; leucine metabolism" ; primary_name "ilv5" ; product "acetohydroxyacid reductoisomerase (predicted)" ; EC_number "1.1.1.86" ;
chromosome2 GeneDB CDS 4086879 4088093 . - . mRNA SPBC56F2.12 ; colour "7" ;
chromosome2 GeneDB misc_feature 4086879 4086903 . - . misc_feature unknown_3514 ; note "SPBC56F2.12, see c56F2 for complete CDS" ;
chromosome2 GeneDB 5'-UTR 4088092 4088141 . - . mRNA SPBC56F2.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.12" ; systematic_id "SPBC56F2.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4088695 4089356 . - . mRNA SPBC56F2.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.11" ; systematic_id "SPBC56F2.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4089357 4090826 . - . mRNA SPBC56F2.11 ; systematic_id "SPBC56F2.11" ; colour "2" ; gene "met6 ||| SPBC56F2.11" ; Alias "met6" ; db_xref "SPD:33/33A09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for methionine; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=orthologous to S. cerevisiae YNL277W; date=19700101 ||| term=experimental tools, selectable marker, amino acid auxotroph; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004414; homoserine O-acetyltransferase activity
GO:0009086; methionine biosynthetic process
GO:0009092; homoserine metabolic process" ; primary_name "met6" ; product "homoserine O-acetyltransferase Met6" ; EC_number "2.3.1.31" ;
chromosome2 GeneDB CDS 4089357 4090826 . - . mRNA SPBC56F2.11 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4090825 4091220 . - . mRNA SPBC56F2.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.11" ; systematic_id "SPBC56F2.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4092213 4092327 . + . mRNA SPBC56F2.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.10c" ; systematic_id "SPBC56F2.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4092328 4093451 . + . mRNA SPBC56F2.10c ; systematic_id "SPBC56F2.10c" ; colour "7" ; gene "alg5 ||| SPBC56F2.10c" ; Alias "alg5" ; db_xref "SPD:17/17F09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL227C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004581; dolichyl-phosphate beta- glucosyltransferase activity
GO:0006487; protein amino acid N-linked glycosylation
GO:0005789; endoplasmic reticulum membrane" ; primary_name "alg5" ; product "dolichyl-phosphate beta-glucosyltransferase Alg5 (predicted)" ; EC_number "2.4.1.117" ;
chromosome2 GeneDB CDS 4092328 4092384 . + . mRNA SPBC56F2.10c ; colour "7" ;
chromosome2 GeneDB CDS 4092540 4093451 . + . mRNA SPBC56F2.10c ; colour "7" ;
chromosome2 GeneDB misc_feature 4092385 4092390 . + . misc_feature unknown_3515 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4092525 4092539 . + . misc_feature unknown_3516 ; colour "6" ; note "ttaacccaaatatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4093452 4093696 . + . mRNA SPBC56F2.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.10c" ; systematic_id "SPBC56F2.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4094301 4094647 . + . mRNA SPBC56F2.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.09c" ; systematic_id "SPBC56F2.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4094648 4095895 . + . mRNA SPBC56F2.09c ; systematic_id "SPBC56F2.09c" ; colour "2" ; gene "arg5 ||| SPBC56F2.09c" ; Alias "arg5" ; db_xref "KEGG:MAP00240; ||| KEGG:MAP00251; ||| SPD:19/19H10" ; GO "GO:0006526; arginine biosynthesis
GO:0005951; carbamoyl-phosphate synthase complex
GO:0004088; carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0000050; urea cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR303W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arg5" ; product "arginine specific carbamoyl-phosphate synthase subunit Arg5 (predicted)" ;
chromosome2 GeneDB CDS 4094648 4095895 . + . mRNA SPBC56F2.09c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4095896 4096227 . + . mRNA SPBC56F2.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.09c" ; systematic_id "SPBC56F2.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4096945 4098930 . + . mRNA SPBC56F2.08c ; db_xref "SPD:37/37B07" ; systematic_id "SPBC56F2.08c" ; colour "7" ; GO "GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0003729; mRNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YJR091C and YPR042C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC56F2.08c" ; product "RNA-binding protein (predicted)" ;
chromosome2 GeneDB CDS 4096945 4098930 . + . mRNA SPBC56F2.08c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4098931 4100021 . + . mRNA SPBC56F2.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.08c" ; systematic_id "SPBC56F2.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4100571 4100580 . + . mRNA SPBC56F2.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.07c" ; systematic_id "SPBC56F2.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4100581 4103010 . + . mRNA SPBC56F2.07c ; db_xref "SPD:28/28G02" ; systematic_id "SPBC56F2.07c" ; colour "7" ; GO "GO:0042254; ribosome large subunit biogenesis
GO:0016887; ATPase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YLR397C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC56F2.07c" ; product "ribosome biogenesis factor recycling AAA family ATPase (predicted)" ;
chromosome2 GeneDB CDS 4100581 4103010 . + . mRNA SPBC56F2.07c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4103011 4103047 . + . mRNA SPBC56F2.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.07c" ; systematic_id "SPBC56F2.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4103258 4103471 . - . mRNA SPBC56F2.15 ; db_xref "PMID:21270388" ; systematic_id "SPBC56F2.15" ;
chromosome2 GeneDB CDS_parts 4103472 4103759 . - . mRNA SPBC56F2.15 ; Alias "tam13" ; systematic_id "SPBC56F2.15" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "tam13" ; product "sequence orphan" ; note "new gene; conserved in japonicus, but the japonicus gene is about 500 amino acids longer...possibly a gene merge in japoinicus as this does not splice to adjacent gene" ;
chromosome2 GeneDB CDS 4103472 4103759 . - . mRNA SPBC56F2.15 ; colour "8" ;
chromosome2 GeneDB 5'-UTR 4103760 4103827 . - . mRNA SPBC56F2.15 ; db_xref "PMID:21270388" ; systematic_id "SPBC56F2.15" ;
chromosome2 GeneDB CDS_parts 4104214 4105449 . - . mRNA SPBC56F2.06 ; systematic_id "SPBC56F2.06" ; colour "8" ; gene "SPBC56F2.06 ||| mug147" ; db_xref "SPD:19/19G04" ; Alias "mug147" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; date=20080924 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug147" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 4104214 4105449 . - . mRNA SPBC56F2.06 ; colour "8" ;
chromosome2 GeneDB misc_feature 4105450 4111500 . - . misc_feature unknown_3517 ; note "No gene predictions in this low-complexity 6kb region; only 1 tRNA" ;
chromosome2 GeneDB tRNA 4107639 4107710 . + . tRNA SPBTRNAGLU.08 ; systematic_id "SPBTRNAGLU.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033418; CTC codon-amino acid adaptor activity" ; gene "SPBTRNAGLU.08" ; product "tRNA Glutamic acid" ; note "tRNA Glu anticodon CTC, Cove score 74.15" ;
chromosome2 GeneDB 5'-UTR 4110031 4111500 . + . mRNA SPBC56F2.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.05c" ; systematic_id "SPBC56F2.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4111501 4112694 . + . mRNA SPBC56F2.05c ; db_xref "SPD:19/19A12" ; systematic_id "SPBC56F2.05c" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC56F2.05c" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB CDS 4111501 4112694 . + . mRNA SPBC56F2.05c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4112695 4112840 . + . mRNA SPBC56F2.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.05c" ; systematic_id "SPBC56F2.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4113007 4113061 . - . mRNA SPBC56F2.04 ; ID "SPBC56F2.04" ; systematic_id "SPBC56F2.04" ; note "mRNA from AU012795" ;
chromosome2 GeneDB CDS_parts 4113062 4120692 . - . mRNA SPBC56F2.04 ; systematic_id "SPBC56F2.04" ; colour "7" ; gene "SPBC56F2.04 ||| utp20" ; Alias "utp20" ; db_xref "SPD:34/34D01" ; GO "GO:0030515; snoRNA binding
GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL004W; date=19700101 ||| term=HEAT repeat; date=20070801 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "utp20" ; product "U3 snoRNP protein Utp20 (predicted)" ;
chromosome2 GeneDB CDS 4113062 4120417 . - . mRNA SPBC56F2.04 ; colour "7" ;
chromosome2 GeneDB CDS 4120502 4120588 . - . mRNA SPBC56F2.04 ; colour "7" ;
chromosome2 GeneDB CDS 4120654 4120692 . - . mRNA SPBC56F2.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 4120418 4120432 . - . misc_feature unknown_3518 ; colour "6" ; note "ctaacaatcgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4120496 4120501 . - . misc_feature unknown_3519 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4120589 4120605 . - . misc_feature unknown_3520 ; colour "6" ; note "ctaacacttaaaatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4120648 4120653 . - . misc_feature unknown_3521 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4120691 4120702 . - . mRNA SPBC56F2.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.04" ; systematic_id "SPBC56F2.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4121486 4122628 . - . mRNA SPBC56F2.03 ; db_xref "SPD:18/18A11" ; systematic_id "SPBC56F2.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR106W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "7" ; gene "SPBC56F2.03" ; product "actin-like protein Arp10 (predicted)" ;
chromosome2 GeneDB CDS 4121486 4122628 . - . mRNA SPBC56F2.03 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4123123 4123138 . - . mRNA SPBC56F2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.02" ; systematic_id "SPBC56F2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4123139 4123720 . - . mRNA SPBC56F2.02 ; systematic_id "SPBC56F2.02" ; colour "2" ; gene "rpl1901 ||| rpl19-1 ||| SPBC56F2.02" ; Alias "rpl1901" ; db_xref "SPD:31/31E11" ; synonym "rpl19-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR084C-A and YBL027W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1901" ; product "60S ribosomal protein L19" ;
chromosome2 GeneDB CDS 4123139 4123720 . - . mRNA SPBC56F2.02 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4123719 4123729 . - . mRNA SPBC56F2.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.02" ; systematic_id "SPBC56F2.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4124165 4124172 . - . mRNA SPBC56F2.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.01" ; systematic_id "SPBC56F2.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4124173 4125581 . - . mRNA SPBC56F2.01 ; systematic_id "SPBC56F2.01" ; colour "2" ; gene "pof12 ||| SPBC56F2.01" ; Alias "pof12" ; db_xref "SPD:44/44E05" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0016567; protein ubiquitination
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pof12" ; product "F-box protein Pof12" ;
chromosome2 GeneDB CDS 4124173 4125348 . - . mRNA SPBC56F2.01 ; colour "2" ;
chromosome2 GeneDB CDS 4125435 4125581 . - . mRNA SPBC56F2.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 4125349 4125366 . - . misc_feature unknown_3522 ; colour "6" ; note "ctaacgaccttcatacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4125429 4125434 . - . misc_feature unknown_3523 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4125580 4125654 . - . mRNA SPBC56F2.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.01" ; systematic_id "SPBC56F2.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4125818 4125882 . + . mRNA SPBC56F2.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC56F2.14" ; systematic_id "SPBC56F2.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4125883 4126258 . + . mRNA SPBC56F2.14 ; systematic_id "SPBC56F2.14" ; colour "7" ; gene "SPBC56F2.14 ||| mrpl44" ; note "added 20.03.2004, found by targeting ortholog of MRP144 TBLASTN; 100 aa but spliced so missed initially" ; Alias "mrpl44" ; db_xref "SPD:52/52C04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR225C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; primary_name "mrpl44" ; product "mitochondrial ribosomal protein subunit l44 (predicted)" ;
chromosome2 GeneDB CDS 4125883 4126072 . + . mRNA SPBC56F2.14 ; colour "7" ;
chromosome2 GeneDB CDS 4126146 4126258 . + . mRNA SPBC56F2.14 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4126315 4126369 . - . mRNA SPBC1861.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1861.01c" ; systematic_id "SPBC1861.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4126370 4128568 . - . mRNA SPBC1861.01c ; systematic_id "SPBC1861.01c" ; colour "2" ; gene "SPBC1861.01c ||| SPBC56F2.13 ||| cnp3" ; Alias "cnp3" ; db_xref "SPD:37/37H08" ; synonym "SPBC56F2.13" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0019237; centromeric DNA binding
GO:0000070; mitotic sister chromatid segregation
GO:0000779; condensed chromosome, pericentric region" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YKL089W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cnp3" ; product "CENP-C" ;
chromosome2 GeneDB CDS 4126370 4126488 . - . mRNA SPBC1861.01c ; colour "2" ;
chromosome2 GeneDB CDS 4126569 4127996 . - . mRNA SPBC1861.01c ; colour "2" ;
chromosome2 GeneDB CDS 4128104 4128411 . - . mRNA SPBC1861.01c ; colour "2" ;
chromosome2 GeneDB CDS 4128492 4128568 . - . mRNA SPBC1861.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 4126489 4126503 . - . misc_feature unknown_3524 ; note "ctaacattgctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4126539 4126636 . + . misc_feature unknown_3525 ; note "nominal overlap with cosmid SPBC1861, EM:AL109834 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 4126539 4126636 . - . misc_feature unknown_3526 ; note "nominal overlap with cosmid SPBB56F2, EM:AL023288 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 4126563 4126568 . - . misc_feature unknown_3527 ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4127997 4128012 . - . misc_feature unknown_3528 ; colour "6" ; note "ctaattatacatacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4128098 4128103 . - . misc_feature unknown_3529 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4128412 4128432 . - . misc_feature unknown_3530 ; colour "6" ; note "ctaaaaaatatttttatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4128486 4128491 . - . misc_feature unknown_3531 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4128567 4129227 . - . mRNA SPBC1861.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1861.01c" ; systematic_id "SPBC1861.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 4129211 4129616 . + . misc_feature unknown_3532 ; note "AT-rich region" ;
chromosome2 GeneDB misc_RNA 4129796 4130288 . + . misc_RNA SPNCRNA.113 ; db_xref "EMBL:AU011806" ; systematic_id "SPNCRNA.113" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU011806; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU011806; date=20050412" ; gene "SPNCRNA.113" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB 5'-UTR 4130876 4131701 . + . mRNA SPBC1861.02 ; ID "SPBC1861.02" ; systematic_id "SPBC1861.02" ; note "mRNA from SPU73044" ;
chromosome2 GeneDB CDS_parts 4131702 4133285 . + . mRNA SPBC1861.02 ; systematic_id "SPBC1861.02" ; colour "2" ; gene "abp2 ||| SPBC1861.02" ; Alias "abp2" ; db_xref "SPD:33/33C03" ; GO "GO:0003688; DNA replication origin binding
GO:0005515; protein binding
GO:0006270; DNA replication initiation
GO:0043596; nuclear replication fork" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9488484; date=19700101 ||| term=phenotype, nuclear morphology defects; qualifier=deletion; cv=phenotype;db_xref=PMID:9488484; date=19700101 ||| term=phenotype, sensitive to UV; qualifier=deletion; cv=phenotype; db_xref=PMID:9488484; date=19700101 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:9488484; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "abp2" ; product "ARS binding protein Abp2" ;
chromosome2 GeneDB CDS 4131702 4133285 . + . mRNA SPBC1861.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4133286 4133635 . + . mRNA SPBC1861.02 ; ID "SPBC1861.02" ; systematic_id "SPBC1861.02" ; note "mRNA from SPU73044" ;
chromosome2 GeneDB CDS_parts 4133719 4135890 . + . mRNA SPBC1861.03 ; systematic_id "SPBC1861.03" ; colour "7" ; gene "mak10 ||| SPBC1861.03" ; Alias "mak10" ; db_xref "SPD:37/37G07" ; GO "GO:0031417; NatC complex
GO:0017196; N-terminal peptidyl-methionine acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL053C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; primary_name "mak10" ; product "NatC N-acetyltransferase complex subunit Mak10 (predicted)" ;
chromosome2 GeneDB CDS 4133719 4135413 . + . mRNA SPBC1861.03 ; colour "7" ;
chromosome2 GeneDB CDS 4135459 4135890 . + . mRNA SPBC1861.03 ; colour "7" ;
chromosome2 GeneDB misc_feature 4135414 4135419 . + . misc_feature unknown_3533 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4135446 4135458 . + . misc_feature unknown_3534 ; colour "6" ; note "ctaacgattttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4135891 4138580 . + . mRNA SPBC1861.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1861.03" ; systematic_id "SPBC1861.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4135981 4139207 . - . mRNA SPBC1861.04c ; db_xref "SPD:48/48A12" ; systematic_id "SPBC1861.04c" ; colour "7" ; GO "GO:0005688; snRNP U6
GO:0017069; snRNA binding
GO:0000244; assembly of spliceosomal tri-snRNP
GO:0000245; spliceosome assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR268C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC1861.04c" ; product "RNA-binding protein Prp24 (predicted)" ;
chromosome2 GeneDB CDS 4135981 4138527 . - . mRNA SPBC1861.04c ; colour "7" ;
chromosome2 GeneDB CDS 4138586 4138851 . - . mRNA SPBC1861.04c ; colour "7" ;
chromosome2 GeneDB CDS 4138976 4139207 . - . mRNA SPBC1861.04c ; colour "7" ;
chromosome2 GeneDB misc_feature 4138528 4138544 . - . misc_feature unknown_3535 ; colour "6" ; note "ctaatcaatgtttacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4138580 4138585 . - . misc_feature unknown_3536 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4138852 4138865 . - . misc_feature unknown_3537 ; colour "6" ; note "ttaatggtttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4138970 4138975 . - . misc_feature unknown_3538 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4139206 4139294 . - . mRNA SPBC1861.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1861.04c" ; systematic_id "SPBC1861.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4140281 4140550 . + . mRNA SPBC1861.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1861.05" ; systematic_id "SPBC1861.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4140551 4142794 . + . mRNA SPBC1861.05 ; db_xref "SPD:28/28A10" ; systematic_id "SPBC1861.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=species distribution, conserved in Eukaryotes; date=20070115 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101" ; colour "10" ; gene "SPBC1861.05" ; product "carbohydrate kinase (predicted)" ;
chromosome2 GeneDB CDS 4140551 4142794 . + . mRNA SPBC1861.05 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 4142795 4144350 . + . mRNA SPBC1861.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1861.05" ; systematic_id "SPBC1861.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4142843 4144144 . - . mRNA SPBC1861.06c ; systematic_id "SPBC1861.06c" ; colour "12" ; gene "SPBC1861.06c ||| mug131" ; db_xref "SPD:22/22F06" ; Alias "mug131" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; primary_name "mug131" ; product "S. pombe specific UPF0300 family protein 4" ;
chromosome2 GeneDB CDS 4142843 4144144 . - . mRNA SPBC1861.06c ; colour "12" ;
chromosome2 GeneDB CDS_parts 4144684 4145098 . + . mRNA SPBC1861.07 ; db_xref "SPD:03/03C07" ; systematic_id "SPBC1861.07" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0008023; transcription elongation factor complex
GO:0016567; protein ubiquitination
GO:0003711; transcriptional elongation regulator activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL046C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1861.07" ; product "elongin C (predicted)" ;
chromosome2 GeneDB CDS 4144684 4144789 . + . mRNA SPBC1861.07 ; colour "7" ;
chromosome2 GeneDB CDS 4144830 4144878 . + . mRNA SPBC1861.07 ; colour "7" ;
chromosome2 GeneDB CDS 4144922 4145055 . + . mRNA SPBC1861.07 ; colour "7" ;
chromosome2 GeneDB CDS 4145094 4145098 . + . mRNA SPBC1861.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 4144790 4144795 . + . misc_feature unknown_3539 ; colour "6" ; note "gtttga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4144819 4144829 . + . misc_feature unknown_3540 ; colour "6" ; note "ctaatgtatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4144879 4144884 . + . misc_feature unknown_3541 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4144906 4144921 . + . misc_feature unknown_3542 ; colour "6" ; note "ctaataaggtgtctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4145056 4145061 . + . misc_feature unknown_3543 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4145081 4145093 . + . misc_feature unknown_3544 ; colour "6" ; note "ctaatgaatacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4145285 4145288 . - . mRNA SPBC1861.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1861.08c" ; systematic_id "SPBC1861.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4145289 4146063 . - . mRNA SPBC1861.08c ; systematic_id "SPBC1861.08c" ; colour "7" ; gene "SPBC1861.08c" ; note "splice donor sequence is incorrect (not GT) homology shows that position of intron is correct but cosmid sequence has good coverage in this region. This region will be checked by sequencing PCR products primed from genomic DNA" ; Alias "lea1" ; db_xref "SPD:09/09F03" ; GO "GO:0005737; cytoplasm
GO:0005686; snRNP U2
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL213W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SNRPA1 homolog; date=20090922" ; primary_name "lea1" ; product "U2 snRNP-associated protein Lea1 (predicted)" ; reserved_name "lea1" ;
chromosome2 GeneDB CDS 4145289 4145929 . - . mRNA SPBC1861.08c ; colour "7" ;
chromosome2 GeneDB CDS 4145985 4146063 . - . mRNA SPBC1861.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 4145930 4145946 . - . misc_feature unknown_3545 ; colour "6" ; note "ctaactcataattacag, splice branch and acceptor" ;
chromosome2 GeneDB 5'-UTR 4146062 4146278 . - . mRNA SPBC1861.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1861.08c" ; systematic_id "SPBC1861.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4147486 4147655 . + . mRNA SPBC1861.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1861.09" ; systematic_id "SPBC1861.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4147656 4149236 . + . mRNA SPBC1861.09 ; systematic_id "SPBC1861.09" ; colour "2" ; gene "ppk22 ||| SPBC1861.09" ; Alias "ppk22" ; db_xref "SPD:45/45C02" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0006468; protein amino acid phosphorylation
GO:0019236; response to pheromone" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNR047W and YCR091W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk22" ; product "serine/threonine protein kinase Ppk22 (predicted)" ;
chromosome2 GeneDB CDS 4147656 4149236 . + . mRNA SPBC1861.09 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4149237 4149302 . + . mRNA SPBC1861.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1861.09" ; systematic_id "SPBC1861.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4149689 4149763 . + . mRNA SPBC14F5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.01" ; systematic_id "SPBC14F5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4149764 4150600 . + . mRNA SPBC14F5.01 ; systematic_id "SPBC14F5.01" ; colour "8" ; gene "SPBC1861.10 ||| SPBC14F5.01" ; Alias "SPBC1861.10" ; db_xref "SPD:10/10H10" ; synonym "SPBC1861.10" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "SPBC1861.10" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 4149764 4150600 . + . mRNA SPBC14F5.01 ; colour "8" ;
chromosome2 GeneDB misc_feature 4150280 4150389 . + . misc_feature unknown_3546 ; note "nominal overlap with cosmid SPBC1861 and cosmid SPBC14F5" ;
chromosome2 GeneDB 3'-UTR 4150601 4150785 . + . mRNA SPBC14F5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.01" ; systematic_id "SPBC14F5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4151501 4151558 . + . mRNA SPBC14F5.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.02" ; systematic_id "SPBC14F5.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4151559 4153193 . + . mRNA SPBC14F5.02 ; db_xref "SPD:26/26B03" ; systematic_id "SPBC14F5.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC14F5.02" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 4151559 4151676 . + . mRNA SPBC14F5.02 ; colour "8" ;
chromosome2 GeneDB CDS 4151718 4151963 . + . mRNA SPBC14F5.02 ; colour "8" ;
chromosome2 GeneDB CDS 4152010 4153193 . + . mRNA SPBC14F5.02 ; colour "8" ;
chromosome2 GeneDB misc_feature 4151677 4151682 . + . misc_feature unknown_3547 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4151702 4151717 . + . misc_feature unknown_3548 ; colour "6" ; note "ctaattcgttttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4151964 4151969 . + . misc_feature unknown_3549 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4151997 4152009 . + . misc_feature unknown_3550 ; colour "6" ; note "ctaacatttacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4153194 4153208 . + . mRNA SPBC14F5.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.02" ; systematic_id "SPBC14F5.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4153236 4153390 . - . mRNA SPBC14F5.03c ; ID "SPBC14F5.03c" ; systematic_id "SPBC14F5.03c" ; note "mRNA from AU006521" ;
chromosome2 GeneDB CDS_parts 4153391 4156594 . - . mRNA SPBC14F5.03c ; systematic_id "SPBC14F5.03c" ; colour "2" ; gene "kap123 ||| SPBC14F5.03c" ; Alias "kap123" ; db_xref "SPD:48/48A08" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0031965; nuclear membrane
GO:0008565; protein transporter activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YER110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "kap123" ; product "karyopherin Kap123" ;
chromosome2 GeneDB CDS 4153391 4156594 . - . mRNA SPBC14F5.03c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4156595 4157111 . - . mRNA SPBC14F5.03c ; ID "SPBC14F5.03c" ; systematic_id "SPBC14F5.03c" ; note "mRNA from AU007817" ;
chromosome2 GeneDB 3'-UTR 4157821 4158171 . - . mRNA SPBC14F5.04c ; ID "SPBC14F5.04c" ; systematic_id "SPBC14F5.04c" ; note "mRNA from AU014126" ;
chromosome2 GeneDB CDS_parts 4158172 4159416 . - . mRNA SPBC14F5.04c ; systematic_id "SPBC14F5.04c" ; colour "7" ; gene "pgk1 ||| SPBC14F5.04c" ; Alias "pgk1" ; db_xref "SPD:32/32F12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005829; cytosol
GO:0006094; gluconeogenesis
GO:0006096; glycolysis
GO:0004618; phosphoglycerate kinase activity
GO:0005524; ATP binding" ; primary_name "pgk1" ; product "phosphoglycerate kinase Pgk1 (predicted)" ; EC_number "2.7.2.3" ;
chromosome2 GeneDB CDS 4158172 4159416 . - . mRNA SPBC14F5.04c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4159415 4159425 . - . mRNA SPBC14F5.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.04c" ; systematic_id "SPBC14F5.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 4160955 4161260 . + . LTR unknown_3551 ; note "degraded LTR" ;
chromosome2 GeneDB rRNA 4161556 4161775 . - . rRNA SPRRNA.37 ; systematic_id "SPRRNA.37" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "5S rRNA" ;
chromosome2 GeneDB 3'-UTR 4162069 4162527 . - . mRNA SPBC14F5.05c ; ID "SPBC14F5.05c" ; systematic_id "SPBC14F5.05c" ; note "mRNA from AU007398" ;
chromosome2 GeneDB CDS_parts 4162528 4163676 . - . mRNA SPBC14F5.05c ; systematic_id "SPBC14F5.05c" ; colour "2" ; gene "sam1 ||| SPBC14F5.05c" ; Alias "sam1" ; db_xref "SPD:32/32E09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hypermethioninemia; date=20060922 ||| term=orthologous to S. cerevisiae YLR180W and YDR502C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006555; methionine metabolism
GO:0004478; methionine adenosyltransferase activity
GO:0005737; cytoplasm
GO:0005524; ATP binding" ; primary_name "sam1" ; product "S-adenosylmethionine synthetase" ; EC_number "2.5.1.6" ;
chromosome2 GeneDB CDS 4162528 4163676 . - . mRNA SPBC14F5.05c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4163675 4163824 . - . mRNA SPBC14F5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.05c" ; systematic_id "SPBC14F5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4164647 4164658 . + . mRNA SPBC14F5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.06" ; systematic_id "SPBC14F5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4164659 4166877 . + . mRNA SPBC14F5.06 ; systematic_id "SPBC14F5.06" ; colour "7" ; db_xref "SPD:46/46F12" ; Alias "rli1" ; GO "GO:0005737; cytoplasm
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0042273; ribosomal large subunit biogenesis
GO:0006413; translational initiation
GO:0051536; iron-sulfur cluster binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rli1" ; product "iron-sulfur ATPase involved in ribosome biogenesis Rli1 (predicted)" ;
chromosome2 GeneDB CDS 4164659 4164715 . + . mRNA SPBC14F5.06 ; colour "7" ;
chromosome2 GeneDB CDS 4165153 4166877 . + . mRNA SPBC14F5.06 ; colour "7" ;
chromosome2 GeneDB misc_feature 4164716 4164721 . + . misc_feature unknown_3552 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4165137 4165152 . + . misc_feature unknown_3553 ; colour "6" ; note "ctcaccaatattttag, splice branch and acceptor -devia tion from consensus branch but intron position confirmed by homology" ;
chromosome2 GeneDB 3'-UTR 4166878 4167123 . + . mRNA SPBC14F5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.06" ; systematic_id "SPBC14F5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4167508 4167587 . + . mRNA SPBC14F5.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.07" ; systematic_id "SPBC14F5.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4167588 4171485 . + . mRNA SPBC14F5.07 ; systematic_id "SPBC14F5.07" ; colour "7" ; db_xref "SPD:39/39D05" ; Alias "doa10" ; synonym "ssm4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YIL030C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=warning, gene name conflict; cv=warning; date=20100309 ||| term=human MARCH6 ortholog; date=20100309" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0030433; ER-associated protein catabolism
GO:0016567; protein ubiquitination" ; primary_name "doa10" ; product "ER-localized ubiquitin ligase Doa10 (predicted)" ;
chromosome2 GeneDB CDS 4167588 4167661 . + . mRNA SPBC14F5.07 ; colour "7" ;
chromosome2 GeneDB CDS 4167716 4167754 . + . mRNA SPBC14F5.07 ; colour "7" ;
chromosome2 GeneDB CDS 4167820 4167893 . + . mRNA SPBC14F5.07 ; colour "7" ;
chromosome2 GeneDB CDS 4167944 4171485 . + . mRNA SPBC14F5.07 ; colour "7" ;
chromosome2 GeneDB misc_feature 4167662 4167667 . + . misc_feature unknown_3554 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4167701 4167715 . + . misc_feature unknown_3555 ; colour "6" ; note "ataacacgaatttag, splice branch and acceptor -deviat ion from branch consensus but intron position confirmed byh omology" ;
chromosome2 GeneDB misc_feature 4167755 4167760 . + . misc_feature unknown_3556 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4167806 4167819 . + . misc_feature unknown_3557 ; colour "6" ; note "ctaatatattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4167894 4167899 . + . misc_feature unknown_3558 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4167929 4167943 . + . misc_feature unknown_3559 ; colour "6" ; note "ctaacactcattcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4171486 4171855 . + . mRNA SPBC14F5.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.07" ; systematic_id "SPBC14F5.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4172385 4172641 . + . mRNA SPBC14F5.08 ; ID "SPBC14F5.08" ; systematic_id "SPBC14F5.08" ; note "mRNA from AU013993" ;
chromosome2 GeneDB CDS_parts 4172642 4173838 . + . mRNA SPBC14F5.08 ; systematic_id "SPBC14F5.08" ; colour "2" ; gene "med7 ||| SPBC14F5.08" ; Alias "med7" ; db_xref "SPD:19/19B06" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10625684; date=19700101 ||| term=orthologous to S. cerevisiae YOL135C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "med7" ; product "mediator complex subunit Med7" ;
chromosome2 GeneDB CDS 4172642 4172887 . + . mRNA SPBC14F5.08 ; colour "2" ;
chromosome2 GeneDB CDS 4172954 4173838 . + . mRNA SPBC14F5.08 ; colour "2" ;
chromosome2 GeneDB misc_feature 4172888 4172893 . + . misc_feature unknown_3560 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4172934 4172953 . + . misc_feature unknown_3561 ; colour "6" ; note "ctaacttatatcgcttatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4173839 4175591 . + . mRNA SPBC14F5.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.08" ; systematic_id "SPBC14F5.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4173944 4173998 . - . mRNA SPBC14F5.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.09c" ; systematic_id "SPBC14F5.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4173999 4175447 . - . mRNA SPBC14F5.09c ; systematic_id "SPBC14F5.09c" ; colour "2" ; gene "ade8 ||| SPBC14F5.09c" ; Alias "ade8" ; db_xref "SPD:40/40E09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, adenylosuccinase deficiency; date=20060920 ||| term=orthologous to S. cerevisiae YLR359W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006189; 'de novo' IMP biosynthesis
GO:0004018; adenylosuccinate lyase activity" ; primary_name "ade8" ; product "adenylosuccinate lyase Ade8" ; EC_number "4.3.2.2" ;
chromosome2 GeneDB CDS 4173999 4175447 . - . mRNA SPBC14F5.09c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4175446 4175482 . - . mRNA SPBC14F5.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.09c" ; systematic_id "SPBC14F5.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4176032 4176251 . - . mRNA SPBC14F5.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.10c" ; systematic_id "SPBC14F5.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4176252 4177712 . - . mRNA SPBC14F5.10c ; db_xref "SPD:23/23E10" ; systematic_id "SPBC14F5.10c" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC14F5.10c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB CDS 4176252 4177712 . - . mRNA SPBC14F5.10c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4177711 4177957 . - . mRNA SPBC14F5.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.10c" ; systematic_id "SPBC14F5.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4178399 4178609 . - . mRNA SPBC14F5.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.11c" ; systematic_id "SPBC14F5.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4178610 4180488 . - . mRNA SPBC14F5.11c ; systematic_id "SPBC14F5.11c" ; colour "7" ; gene "SPBC14F5.11c ||| mug186" ; Alias "mug186" ; db_xref "SPD:26/26D06" ; GO "GO:0035091; phosphoinositide binding
GO:0042147; retrograde transport, endosome to Golgi
GO:0005768; endosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR425W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug186" ; product "sorting nexin Snx41 (predicted)" ;
chromosome2 GeneDB CDS 4178610 4180082 . - . mRNA SPBC14F5.11c ; colour "7" ;
chromosome2 GeneDB CDS 4180201 4180488 . - . mRNA SPBC14F5.11c ; colour "7" ;
chromosome2 GeneDB misc_feature 4180083 4180096 . - . misc_feature unknown_3562 ; colour "6" ; note "ctaacggtttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4180195 4180200 . - . misc_feature unknown_3563 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4180487 4180542 . - . mRNA SPBC14F5.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.11c" ; systematic_id "SPBC14F5.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4180866 4182410 . - . mRNA SPBC14F5.12c ; systematic_id "SPBC14F5.12c" ; colour "2" ; gene "cbh2 ||| SPBC14F5.12c" ; Alias "cbh2" ; db_xref "SPD:25/25A11" ; GO "GO:0000780; condensed nuclear chromosome, pericentric region
GO:0019237; centromeric DNA binding
GO:0046983; protein dimerization activity
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0016570; histone modification" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CENP-B box; date=19700101 ||| term=orthologous to S. cerevisiae YDR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cbh2" ; product "CENP-B homolog Cbh2" ;
chromosome2 GeneDB CDS 4180866 4182410 . - . mRNA SPBC14F5.12c ; colour "2" ;
chromosome2 GeneDB CDS_parts 4182792 4184524 . - . mRNA SPBC14F5.13c ; db_xref "SPD:35/35G05" ; systematic_id "SPBC14F5.13c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR481C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0000329; vacuolar membrane (sensu Fungi)
GO:0006470; protein amino acid dephosphorylation
GO:0004035; alkaline phosphatase activity" ; gene "SPBC14F5.13c" ; product "vacuolar membrane alkaline phosphatase (predicted)" ; EC_number "3.1.3.1" ;
chromosome2 GeneDB CDS 4182792 4184185 . - . mRNA SPBC14F5.13c ; colour "7" ;
chromosome2 GeneDB CDS 4184320 4184524 . - . mRNA SPBC14F5.13c ; colour "7" ;
chromosome2 GeneDB misc_feature 4184186 4184201 . - . misc_feature unknown_3564 ; colour "6" ; note "ctgactttttttaaag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4184186 4184319 . - . intron SPBC14F5.13c ; systematic_id "SPBC14F5.13c" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 4184314 4184319 . - . misc_feature unknown_3565 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4184523 4184613 . - . mRNA SPBC14F5.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC14F5.13c" ; systematic_id "SPBC14F5.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 4185026 4185128 . + . misc_feature unknown_3566 ; note "nominal overlap with cosmid SPBC3F6 and cosmid SPBC14F5" ;
chromosome2 GeneDB 3'-UTR 4185216 4185472 . - . mRNA SPBC3F6.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3F6.01c" ; systematic_id "SPBC3F6.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4185473 4186894 . - . mRNA SPBC3F6.01c ; db_xref "SPD:23/23B04" ; systematic_id "SPBC3F6.01c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR123C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004722; protein serine/threonine phosphatase activity
GO:0006470; protein amino acid dephosphorylation" ; gene "SPBC3F6.01c" ; product "serine/threonine protein phosphatase (predicted)" ; EC_number "3.1.3.16" ;
chromosome2 GeneDB CDS 4185473 4186894 . - . mRNA SPBC3F6.01c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4186893 4186924 . - . mRNA SPBC3F6.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3F6.01c" ; systematic_id "SPBC3F6.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4187250 4187706 . - . mRNA SPBC3F6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3F6.02c" ; systematic_id "SPBC3F6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4187707 4188729 . - . mRNA SPBC3F6.02c ; db_xref "SPD:15/15D02" ; systematic_id "SPBC3F6.02c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL001C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000252; C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity
GO:0006696; ergosterol biosynthesis
GO:0005783; endoplasmic reticulum" ; gene "SPBC3F6.02c" ; product "3 beta-hydroxysteroid dehydrogenase/delta 5-->4- isomerase (predicted)" ; EC_number "5.3.3.1" ;
chromosome2 GeneDB CDS 4187707 4188729 . - . mRNA SPBC3F6.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4188728 4188740 . - . mRNA SPBC3F6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3F6.02c" ; systematic_id "SPBC3F6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4189836 4189966 . + . mRNA SPBC3F6.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3F6.03" ; systematic_id "SPBC3F6.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4189967 4191234 . + . mRNA SPBC3F6.03 ; systematic_id "SPBC3F6.03" ; colour "2" ; gene "trr1 ||| caf4 ||| SPBC3F6.03" ; Alias "trr1" ; db_xref "SPD:41/41H04" ; synonym "caf4" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005515; protein binding
GO:0004791; thioredoxin-disulfide reductase activity
GO:0034599; cellular response to oxidative stress
GO:0019430; removal of superoxide radicals
GO:0071313; cellular response to caffeine" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR353W and YHR106W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "trr1" ; product "thioredoxin reductase Trr1" ; EC_number "1.8.1.9" ;
chromosome2 GeneDB CDS 4189967 4189967 . + . mRNA SPBC3F6.03 ; colour "2" ;
chromosome2 GeneDB CDS 4190267 4191234 . + . mRNA SPBC3F6.03 ; colour "2" ;
chromosome2 GeneDB misc_feature 4189968 4189973 . + . misc_feature unknown_3567 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4190245 4190266 . + . misc_feature unknown_3568 ; colour "6" ; note "ttaattttactgacttcattag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4191235 4191380 . + . mRNA SPBC3F6.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3F6.03" ; systematic_id "SPBC3F6.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4191543 4191622 . - . mRNA SPBC3F6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3F6.04c" ; systematic_id "SPBC3F6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4191623 4194157 . - . mRNA SPBC3F6.04c ; db_xref "SPD:29/29C09" ; systematic_id "SPBC3F6.04c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0030529; ribonucleoprotein complex
GO:0030515; snoRNA binding
GO:0030490; maturation of SSU-rRNA
GO:0042274; ribosomal small subunit biogenesis and assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL148C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC3F6.04c" ; product "U3 snoRNP protein Nop14 (predicted)" ;
chromosome2 GeneDB CDS 4191623 4193956 . - . mRNA SPBC3F6.04c ; colour "7" ;
chromosome2 GeneDB CDS 4194008 4194157 . - . mRNA SPBC3F6.04c ; colour "7" ;
chromosome2 GeneDB misc_feature 4193957 4193971 . - . misc_feature unknown_3569 ; colour "6" ; note "ctaattatttttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4194002 4194007 . - . misc_feature unknown_3570 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4194156 4194183 . - . mRNA SPBC3F6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3F6.04c" ; systematic_id "SPBC3F6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 4194849 4196008 . - . misc_RNA SPNCRNA.438 ; db_xref "PMID:18488015" ; synonym "SPNG1958-59" ; systematic_id "SPNCRNA.438" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB 5'-UTR 4196054 4196294 . + . mRNA SPBC3F6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3F6.05" ; systematic_id "SPBC3F6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4196295 4199747 . + . mRNA SPBC3F6.05 ; systematic_id "SPBC3F6.05" ; colour "2" ; gene "rga1 ||| SPBC3F6.05" ; Alias "rga1" ; db_xref "SPD:48/48C12" ; GO "GO:0005737; cytoplasm
GO:0005100; Rho GTPase activator activity
GO:0051666; actin cortical patch localization
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0008360; regulation of cell shape
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0032319; regulation of Rho GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=LIM domain; date=19700101 ||| term=orthologous to S. cerevisiae YDL240W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rga1" ; product "Rho-type GTPase activating protein Rga1" ;
chromosome2 GeneDB CDS 4196295 4199747 . + . mRNA SPBC3F6.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4199748 4199959 . + . mRNA SPBC3F6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC3F6.05" ; systematic_id "SPBC3F6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4199902 4200075 . - . mRNA SPBC342.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC342.01c" ; systematic_id "SPBC342.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4200076 4201702 . - . mRNA SPBC342.01c ; systematic_id "SPBC342.01c" ; colour "7" ; gene "alg6 ||| SPBC3F6.06c ||| SPBC342.01c" ; note "initially annotated as hypothetical protein but no Met or homology in adjoining cosmid" ; Alias "alg6" ; db_xref "SPD:26/26A04" ; synonym "SPBC3F6.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0005783; endoplasmic reticulum
GO:0016758; transferase activity, transferring hexosyl groups
GO:0042283; dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity
GO:0006490; oligosaccharide-lipid intermediate assembly" ; primary_name "alg6" ; product "glucosyltransferase Alg6 (predicted)" ;
chromosome2 GeneDB CDS 4200076 4200276 . - . mRNA SPBC342.01c ; colour "7" ;
chromosome2 GeneDB CDS 4200335 4200458 . - . mRNA SPBC342.01c ; colour "7" ;
chromosome2 GeneDB CDS 4200507 4201702 . - . mRNA SPBC342.01c ; colour "7" ;
chromosome2 GeneDB misc_feature 4200277 4200290 . - . misc_feature unknown_3571 ; colour "6" ; note "ttaactggatgcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4200329 4200334 . - . misc_feature unknown_3572 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4200459 4200474 . - . misc_feature unknown_3573 ; colour "6" ; note "ctaatatttttattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4200501 4200506 . - . misc_feature unknown_3574 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4201028 4202336 . + . misc_feature unknown_3575 ; note "nominal overlap with cosmid SPBC342 and cosmid SPBC3F6" ;
chromosome2 GeneDB 5'-UTR 4201701 4201828 . - . mRNA SPBC342.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC342.01c" ; systematic_id "SPBC342.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 4202136 4202336 . - . misc_feature unknown_3576 ; note "SPBC3F6.07c initially annotated as hypothetical protein but no Met or homology in adjoining cosmid" ;
chromosome2 GeneDB misc_feature 4202139 4202354 . - . misc_feature unknown_3577 ; note "annotated as RNA-binding protein fragment in cosmid c3F6 but no homology or splice data to suggest that it's real" ;
chromosome2 GeneDB 5'-UTR 4203368 4203416 . + . mRNA SPBC342.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC342.02" ; systematic_id "SPBC342.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 4203368 4205951 . - . misc_RNA SPNCRNA.576 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.576" ; synonym "SPNG2AF40" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB CDS_parts 4203417 4205852 . + . mRNA SPBC342.02 ; systematic_id "SPBC342.02" ; colour "7" ; gene "SPBC342.02 ||| qrs1" ; Alias "qrs1" ; db_xref "SPD:28/28G04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0005737; cytoplasm
GO:0004819; glutamine-tRNA ligase activity
GO:0006425; glutaminyl-tRNA aminoacylation" ; primary_name "qrs1" ; product "cytoplasmic glutaminyl-tRNA ligase Qrs1 (predicted)" ; EC_number "6.1.1.18" ;
chromosome2 GeneDB CDS 4203417 4205852 . + . mRNA SPBC342.02 ; colour "7" ;
chromosome2 GeneDB CDS_parts 4206247 4207617 . + . mRNA SPBC342.03 ; systematic_id "SPBC342.03" ; colour "2" ; gene "SPBC342.03 ||| gas4" ; db_xref "SPD:21/21C05" ; Alias "gas4" ; GO "; prospore membrane
GO:0042124; 1,3-beta-glucanosyltransferase activity
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0034412; ascospore wall beta glucan biosynthetic process
GO:0031321; ascospore-type prospore formation
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOL030W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18410286; date=20080417 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:18410286; date=20080417 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; primary_name "gas4" ; product "sporulation specific 1,3-beta- glucanosyltransferase Gas4" ;
chromosome2 GeneDB CDS 4206247 4207617 . + . mRNA SPBC342.03 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4207618 4207715 . + . mRNA SPBC342.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC342.03" ; systematic_id "SPBC342.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4208265 4208297 . + . mRNA SPBC342.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC342.04" ; systematic_id "SPBC342.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4208298 4209279 . + . mRNA SPBC342.04 ; systematic_id "SPBC342.04" ; colour "2" ; db_xref "SPD:14/14B10" ; Alias "rpn1301" ; synonym "rpn13 ||| rpn13a" ; GO "GO:0006511; ubiquitin-dependent protein catabolic process
GO:0008541; proteeasome regulatory particle, lid subcomplex
GO:0000502; proteasome complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=orthologous to S. cerevisiae YLR421C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human ADRM1 ortholog; date=20100908" ; primary_name "rpn1301" ; product "19S proteasome regulatory subunit Rpn13a" ;
chromosome2 GeneDB CDS 4208298 4208377 . + . mRNA SPBC342.04 ; colour "2" ;
chromosome2 GeneDB CDS 4208418 4208499 . + . mRNA SPBC342.04 ; colour "2" ;
chromosome2 GeneDB CDS 4208566 4209279 . + . mRNA SPBC342.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 4208378 4208383 . + . misc_feature unknown_3578 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4208404 4208417 . + . misc_feature unknown_3579 ; colour "6" ; note "ctaacaaatcacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4208500 4208505 . + . misc_feature unknown_3580 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4208552 4208565 . + . misc_feature unknown_3581 ; colour "6" ; note "ctaaccaagtttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4209280 4209694 . + . mRNA SPBC342.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC342.04" ; systematic_id "SPBC342.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB tRNA 4210053 4210126 . - . tRNA SPBTRNAASN.04 ; systematic_id "SPBTRNAASN.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033449; GTT codon-amino acid adaptor activity" ; gene "SPBTRNAASN.04" ; product "tRNA Asparagine" ; note "anticodon GTT, Cove score 75.79" ;
chromosome2 GeneDB rRNA 4210360 4210500 . - . rRNA SPRRNA.38 ; systematic_id "SPRRNA.38" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.38" ; product "5S rRNA" ; note "5s rRNA gene and flanks" ;
chromosome2 GeneDB 5'-UTR 4211015 4211086 . + . mRNA SPBC342.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC342.05" ; systematic_id "SPBC342.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4211087 4213423 . + . mRNA SPBC342.05 ; systematic_id "SPBC342.05" ; colour "2" ; db_xref "SPD:33/33G08" ; Alias "crb2" ; synonym "rhp9" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9153313; date=19700101 ||| term=orthologous to S. cerevisiae YDR217C; date=19700101 ||| term=disease associated, cancer; date=20070704 ||| term=tudor domain; date=20080303 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0000790; nuclear chromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0007095; mitotic cell cycle G@-M transition DNA damage checkpoint
GO:0000723; telomere maintenance" ; primary_name "crb2" ; product "DNA repair protein Rad9 homolog, Rhp9" ;
chromosome2 GeneDB CDS 4211087 4213423 . + . mRNA SPBC342.05 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4213424 4213540 . + . mRNA SPBC342.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC342.05" ; systematic_id "SPBC342.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4213540 4213639 . - . mRNA SPBC342.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC342.06c" ; systematic_id "SPBC342.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4213640 4214749 . - . mRNA SPBC342.06c ; systematic_id "SPBC342.06c" ; colour "2" ; gene "rtt109 ||| SPBC342.06c" ; Alias "rtt109" ; db_xref "SPD:17/17E02" ; synonym "kat11" ; GO "GO:0005634; nucleus
GO:0032931; histone lysine N-acetyltransferase activity (H3-K56 specific)
GO:0030702; chromatin silencing at centromere
GO:0030702; chromatin silencing at centromere
GO:0016573; histone acetylation
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL002W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17369611; date=20070823 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Eukaryotes only; date=20091112 ||| term=species distribution, conserved in Fungi; date=20091112 ||| term=species distribution, conserved in Vertebrates; date=20091112 ||| term=species distribution, conserved in Metazoa; date=20091112" ; primary_name "rtt109" ; product "RTT109 family histone lysine acetyltransferase" ;
chromosome2 GeneDB CDS 4213640 4214749 . - . mRNA SPBC342.06c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4214748 4214751 . - . mRNA SPBC342.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC342.06c" ; systematic_id "SPBC342.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4214973 4215005 . + . mRNA SPBC16G5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.01" ; systematic_id "SPBC16G5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4215006 4215869 . + . mRNA SPBC16G5.01 ; systematic_id "SPBC16G5.01" ; colour "2" ; gene "rpn12 ||| mts3 ||| SPBC342.07 ||| SPBC16G5.01" ; Alias "rpn12" ; db_xref "SPD:32/32A04" ; synonym "mts3 ||| SPBC342.07" ; GO "GO:0008541; proteasome regulatory particle, lid subcomplex
GO:0006511; ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR052W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpn12" ; product "19S proteasome regulatory subunit Rpn12" ;
chromosome2 GeneDB CDS 4215006 4215156 . + . mRNA SPBC16G5.01 ; colour "2" ;
chromosome2 GeneDB CDS 4215208 4215869 . + . mRNA SPBC16G5.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 4215157 4215162 . + . misc_feature unknown_3582 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 4215157 4215207 . + . intron SPBC16G5.01 ; systematic_id "SPBC16G5.01" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4215192 4215207 . + . misc_feature unknown_3583 ; colour "6" ; note "ctaatcttccttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4215435 4215535 . + . misc_feature unknown_3584 ; note "nominal overlap with cosmid SPBC16G5 and cosmid SPBC342" ;
chromosome2 GeneDB 3'-UTR 4215870 4216075 . + . mRNA SPBC16G5.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.01" ; systematic_id "SPBC16G5.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4215960 4216146 . - . mRNA SPBC16G5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.02c" ; systematic_id "SPBC16G5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4216147 4217103 . - . mRNA SPBC16G5.02c ; db_xref "KEGG:MAP00030; ||| SPD:43/43F05" ; systematic_id "SPBC16G5.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006014; D-ribose metabolism
GO:0004747; ribokinase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPBC16G5.02c" ; product "ribokinase (predicted)" ; EC_number "2.7.1.15" ;
chromosome2 GeneDB CDS 4216147 4217103 . - . mRNA SPBC16G5.02c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4217102 4217335 . - . mRNA SPBC16G5.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.02c" ; systematic_id "SPBC16G5.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 4217977 4218323 . + . LTR unknown_3585 ; colour "4" ; note "very degraded LTR; possibly tf1" ;
chromosome2 GeneDB 5'-UTR 4218490 4218673 . + . mRNA SPBC16G5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.03" ; systematic_id "SPBC16G5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4218674 4219480 . + . mRNA SPBC16G5.03 ; db_xref "SPD:10/10C07" ; systematic_id "SPBC16G5.03" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC16G5.03" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB CDS 4218674 4219480 . + . mRNA SPBC16G5.03 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4219481 4219537 . + . mRNA SPBC16G5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.03" ; systematic_id "SPBC16G5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4219755 4219902 . + . mRNA SPBC16G5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.04" ; systematic_id "SPBC16G5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4219903 4220418 . + . mRNA SPBC16G5.04 ; systematic_id "SPBC16G5.04" ; colour "7" ; gene "SPBC16G5.04 ||| mrpl23" ; Alias "mrpl23" ; db_xref "SPD:05/05A12" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR150W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl23" ; product "mitochondrial ribosomal protein subunit L13 (predicted)" ;
chromosome2 GeneDB CDS 4219903 4219923 . + . mRNA SPBC16G5.04 ; colour "7" ;
chromosome2 GeneDB CDS 4219966 4220418 . + . mRNA SPBC16G5.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 4219924 4219929 . + . misc_feature unknown_3586 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4219953 4219965 . + . misc_feature unknown_3587 ; colour "6" ; note "ctaacaatatcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4220419 4220530 . + . mRNA SPBC16G5.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.04" ; systematic_id "SPBC16G5.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4220639 4220944 . - . mRNA SPBC16G5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.05c" ; systematic_id "SPBC16G5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4220945 4222366 . - . mRNA SPBC16G5.05c ; db_xref "SPD:21/21H04" ; systematic_id "SPBC16G5.05c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005783; endoplasmic reticulum
GO:0016021; integral to membrane
GO:0045047; protein targeting to ER
GO:0006020; myo-inositol metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER120W and YBL091C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC16G5.05c" ; product "MSP domain (predicted)" ;
chromosome2 GeneDB CDS 4220945 4221906 . - . mRNA SPBC16G5.05c ; colour "7" ;
chromosome2 GeneDB CDS 4222177 4222366 . - . mRNA SPBC16G5.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 4221907 4221922 . - . misc_feature unknown_3588 ; colour "6" ; note "ctaacatatattctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4222171 4222176 . - . misc_feature unknown_3589 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4222365 4222564 . - . mRNA SPBC16G5.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.05c" ; systematic_id "SPBC16G5.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4222780 4223176 . + . mRNA SPBC16G5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.06" ; systematic_id "SPBC16G5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4223177 4223869 . + . mRNA SPBC16G5.06 ; db_xref "SPD:08/08B01" ; systematic_id "SPBC16G5.06" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC16G5.06" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 4223177 4223869 . + . mRNA SPBC16G5.06 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 4223870 4223936 . + . mRNA SPBC16G5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.06" ; systematic_id "SPBC16G5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4224045 4224139 . - . mRNA SPBC16G5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.07c" ; systematic_id "SPBC16G5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4224140 4225342 . - . mRNA SPBC16G5.07c ; db_xref "SPD:22/22A12" ; systematic_id "SPBC16G5.07c" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC16G5.07c" ; product "prohibitin (predicted)" ;
chromosome2 GeneDB CDS 4224140 4224410 . - . mRNA SPBC16G5.07c ; colour "10" ;
chromosome2 GeneDB CDS 4224453 4225031 . - . mRNA SPBC16G5.07c ; colour "10" ;
chromosome2 GeneDB CDS 4225128 4225342 . - . mRNA SPBC16G5.07c ; colour "10" ;
chromosome2 GeneDB misc_feature 4224411 4224423 . - . misc_feature unknown_3590 ; colour "6" ; note "ctcacatttttag, splice branch and acceptor -deviatio n from consensus branch but confirmed by homology" ;
chromosome2 GeneDB misc_feature 4224447 4224452 . - . misc_feature unknown_3591 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4225032 4225044 . - . misc_feature unknown_3592 ; colour "6" ; note "ctaaccgatctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4225122 4225127 . - . misc_feature unknown_3593 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4225341 4225644 . - . mRNA SPBC16G5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.07c" ; systematic_id "SPBC16G5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4226799 4227285 . + . mRNA SPBC16G5.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.08" ; systematic_id "SPBC16G5.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4227286 4228350 . + . mRNA SPBC16G5.08 ; systematic_id "SPBC16G5.08" ; colour "7" ; gene "trp4 ||| SPBC16G5.08" ; note "assignment made from mapping data" ; Alias "trp4" ; db_xref "SPD:16/16D01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR354W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000162; tryptophan biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004048; anthranilate phosphoribosyltransferase activity" ; primary_name "trp4" ; product "phosphoribosylanthranilate transferase Trp4 (predicted)" ; EC_number "2.4.2.18" ;
chromosome2 GeneDB CDS 4227286 4228350 . + . mRNA SPBC16G5.08 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4228351 4228555 . + . mRNA SPBC16G5.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.08" ; systematic_id "SPBC16G5.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4228779 4228816 . + . mRNA SPBC16G5.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.09" ; systematic_id "SPBC16G5.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4228817 4230463 . + . mRNA SPBC16G5.09 ; db_xref "SPD:34/34F04" ; systematic_id "SPBC16G5.09" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL203C; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=19700101 ||| term=species distribution, conserved in Metazoa; date=19700101 ||| term=species distribution, conserved in Vertebrates; date=19700101 ||| term=human PPGB orthog; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=19700101" ; GO "GO:0005802; Golgi trans face
GO:0004185; serine-type carboxypeptidase activity
GO:0044257; cellular protein catabolic process" ; gene "SPBC16G5.09" ; product "serine carboxypeptidase (predicted)" ; EC_number "3.4.16.6" ;
chromosome2 GeneDB CDS 4228817 4229044 . + . mRNA SPBC16G5.09 ; colour "10" ;
chromosome2 GeneDB CDS 4229112 4229810 . + . mRNA SPBC16G5.09 ; colour "10" ;
chromosome2 GeneDB CDS 4229858 4230463 . + . mRNA SPBC16G5.09 ; colour "10" ;
chromosome2 GeneDB misc_feature 4229045 4229050 . + . misc_feature unknown_3594 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4229097 4229111 . + . misc_feature unknown_3595 ; colour "6" ; note "ctaatttgataaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4229811 4229816 . + . misc_feature unknown_3596 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4229845 4229857 . + . misc_feature unknown_3597 ; colour "6" ; note "ctaacattgtcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4230464 4230704 . + . mRNA SPBC16G5.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.09" ; systematic_id "SPBC16G5.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 4231522 4231869 . + . LTR unknown_3598 ; note "Tf2-type LTR" ;
chromosome2 GeneDB CDS_parts 4231953 4232949 . + . mRNA SPBC16G5.10 ; db_xref "SPD:14/14F01" ; systematic_id "SPBC16G5.10" ; colour "7" ; GO "GO:0000175; 3'-5'-exoribonuclease activity
GO:0006364; 35S primary transcript processing
GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL111C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC16G5.10" ; product "exosome subunit Rrp42 (predicted)" ;
chromosome2 GeneDB CDS 4231953 4232200 . + . mRNA SPBC16G5.10 ; colour "7" ;
chromosome2 GeneDB CDS 4232298 4232949 . + . mRNA SPBC16G5.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 4232201 4232206 . + . misc_feature unknown_3599 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4232280 4232297 . + . misc_feature unknown_3600 ; colour "6" ; note "ctaacactttttatgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4232683 4233196 . - . mRNA SPBC16G5.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.11c" ; systematic_id "SPBC16G5.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4232950 4233010 . + . mRNA SPBC16G5.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.10" ; systematic_id "SPBC16G5.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4233197 4233784 . - . mRNA SPBC16G5.11c ; systematic_id "SPBC16G5.11c" ; colour "7" ; note "budding yeast presumed ortholog YIL016W does not have N-terminal ubiquitin domain" ; Alias "bag101" ; db_xref "SPD:06/06D09" ; synonym "bag1-a ||| bag1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL016W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006457; protein folding" ; primary_name "bag101" ; product "BAG family molecular chaperone regulator Bag101 (predicted)" ;
chromosome2 GeneDB CDS 4233197 4233784 . - . mRNA SPBC16G5.11c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4233783 4233948 . - . mRNA SPBC16G5.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.11c" ; systematic_id "SPBC16G5.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4233935 4236137 . - . mRNA SPBC16G5.12c ; systematic_id "SPBC16G5.12c" ; colour "2" ; gene "top3 ||| SPBC16G5.12c" ; Alias "top3" ; db_xref "SPD:40/40H04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10572171; date=19700101 ||| term=phenotype, DNA damage checkpoint defects; qualifier=deletion; cv=phenotype; db_xref=PMID:12409469; date=20080218 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10572171; date=20100705 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:10572171; date=20100705 ||| term=orthologous to S. cerevisiae YLR234W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031422; RecQ helicase-Topo III complex
GO:0005634; nucleus
GO:0003917; DNA topoisomerase type I activity
GO:0005515; protein binding
GO:0006259; DNA metabolic process
GO:0006261; DNA replication
GO:0000070; mitotic sister chromatid segregation
GO:0031297; collapsed replication fork processing
GO:0043007; maintenance of rDNA
GO:0045910; negative regulation of DNA recombination
GO:0000280; nuclear division
GO:0007000; nucleolus organization and biogenesis
GO:0000712; resolution of meiotic joint molecules as recombinants" ; primary_name "top3" ; product "DNA topoisomerase III" ; EC_number "5.99.1.2" ;
chromosome2 GeneDB CDS 4233935 4233979 . - . mRNA SPBC16G5.12c ; colour "2" ;
chromosome2 GeneDB CDS 4234081 4234816 . - . mRNA SPBC16G5.12c ; colour "2" ;
chromosome2 GeneDB CDS 4234864 4235000 . - . mRNA SPBC16G5.12c ; colour "2" ;
chromosome2 GeneDB CDS 4235051 4235543 . - . mRNA SPBC16G5.12c ; colour "2" ;
chromosome2 GeneDB CDS 4235633 4236009 . - . mRNA SPBC16G5.12c ; colour "2" ;
chromosome2 GeneDB CDS 4236057 4236137 . - . mRNA SPBC16G5.12c ; colour "2" ;
chromosome2 GeneDB misc_feature 4233980 4233997 . - . misc_feature unknown_3601 ; colour "6" ; note "ctaacaaatataacgcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4233980 4234080 . - . intron SPBC16G5.12c ; systematic_id "SPBC16G5.12c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4234075 4234080 . - . misc_feature unknown_3602 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4234817 4234826 . - . misc_feature unknown_3603 ; colour "6" ; note "ctaatgttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4234817 4234863 . - . intron SPBC16G5.12c ; systematic_id "SPBC16G5.12c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4234858 4234863 . - . misc_feature unknown_3604 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4235001 4235019 . - . misc_feature unknown_3605 ; colour "6" ; note "ttaacatcattttcatcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4235001 4235050 . - . intron SPBC16G5.12c ; systematic_id "SPBC16G5.12c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4235045 4235050 . - . misc_feature unknown_3606 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4235544 4235558 . - . misc_feature unknown_3607 ; colour "6" ; note "ctaactaattttcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4235544 4235632 . - . intron SPBC16G5.12c ; systematic_id "SPBC16G5.12c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4235627 4235632 . - . misc_feature unknown_3608 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4236010 4236022 . - . misc_feature unknown_3609 ; colour "6" ; note "ctaatctcttaag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4236010 4236056 . - . intron SPBC16G5.12c ; systematic_id "SPBC16G5.12c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4236051 4236056 . - . misc_feature unknown_3610 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4236136 4236257 . - . mRNA SPBC16G5.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.12c" ; systematic_id "SPBC16G5.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4237029 4237221 . + . mRNA SPBC16G5.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.13" ; systematic_id "SPBC16G5.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4237222 4237602 . + . mRNA SPBC16G5.13 ; systematic_id "SPBC16G5.13" ; colour "8" ; gene "SPBC16G5.13" ; db_xref "SPD:02/02G10" ; Alias "ptf2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; primary_name "ptf2" ; product "sequence orphan" ; reserved_name "ptf2" ;
chromosome2 GeneDB CDS 4237222 4237602 . + . mRNA SPBC16G5.13 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 4237603 4237634 . + . mRNA SPBC16G5.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.13" ; systematic_id "SPBC16G5.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4238294 4238324 . - . mRNA SPBC16G5.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.14c" ; systematic_id "SPBC16G5.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4238325 4239326 . - . mRNA SPBC16G5.14c ; systematic_id "SPBC16G5.14c" ; colour "7" ; gene "rps3 ||| SPBC16G5.14c" ; Alias "rps3" ; db_xref "SPD:40/40C01" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu the Eukaryota research community)
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps3" ; product "40S ribosomal protein S3 (predicted)" ;
chromosome2 GeneDB CDS 4238325 4239038 . - . mRNA SPBC16G5.14c ; colour "7" ;
chromosome2 GeneDB CDS 4239291 4239326 . - . mRNA SPBC16G5.14c ; colour "7" ;
chromosome2 GeneDB misc_feature 4239039 4239059 . - . misc_feature unknown_3611 ; colour "6" ; note "ctaaagtactgaccaatttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4239039 4239290 . - . intron SPBC16G5.14c ; systematic_id "SPBC16G5.14c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_RNA 4239161 4239235 . - . misc_RNA SPNCRNA.497 ; systematic_id "SPNCRNA.497" ; controlled_curation "term=warning, ncRNA in intron; db_xref=PMID:18641648; date=20100426 ||| term=warning, new gene; db_xref=PMID:18641648; date=20100426" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB misc_feature 4239285 4239290 . - . misc_feature unknown_3612 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4239325 4239336 . - . mRNA SPBC16G5.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.14c" ; systematic_id "SPBC16G5.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4239940 4240441 . - . mRNA SPBC16G5.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.15c" ; systematic_id "SPBC16G5.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4240442 4242662 . - . mRNA SPBC16G5.15c ; systematic_id "SPBC16G5.15c" ; colour "2" ; gene "fkh2 ||| SPBC16G5.15c" ; Alias "fkh2" ; db_xref "SPD:46/46G03" ; GO "GO:0005667; transcription factor complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0033554; cellular response to stress
GO:0007135; meiosis II
GO:0006355; regulation of transcription, DNA- dependent
GO:0045896; regulation of transcription, mitotic
GO:0000117; regulation of transcription involved in G2/M-phase of mitotic cell cycle
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15777722; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; db_xref=PMID:15302827; date=20100727 ||| term=fork head domain; date=19700101 ||| term=orthologous to S. cerevisiae YNL068C and YIL131C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:15302827; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=gene expression, transcriptionally regulates spo12; db_xref=PMID:15302827; date=20100825 ||| term=gene expression, transcriptionally regulates cdc15; db_xref=PMID:15302827; date=20100825" ; primary_name "fkh2" ; product "fork head transcription factor Fkh2" ;
chromosome2 GeneDB CDS 4240442 4241858 . - . mRNA SPBC16G5.15c ; colour "2" ;
chromosome2 GeneDB CDS 4242151 4242662 . - . mRNA SPBC16G5.15c ; colour "2" ;
chromosome2 GeneDB misc_feature 4241859 4241873 . - . misc_feature unknown_3613 ; colour "6" ; note "ctaattatctactag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4242145 4242150 . - . misc_feature unknown_3614 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4242661 4242695 . - . mRNA SPBC16G5.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.15c" ; systematic_id "SPBC16G5.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 4242697 4243538 . + . misc_RNA SPNCRNA.439 ; db_xref "PMID:18488015" ; synonym "SPNG1965" ; systematic_id "SPNCRNA.439" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 4243792 4243999 . + . mRNA SPBC16G5.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.16" ; systematic_id "SPBC16G5.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4244000 4246860 . + . mRNA SPBC16G5.16 ; db_xref "SPD:29/29F07" ; systematic_id "SPBC16G5.16" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC16G5.16" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome2 GeneDB CDS 4244000 4244089 . + . mRNA SPBC16G5.16 ; colour "7" ;
chromosome2 GeneDB CDS 4244360 4244390 . + . mRNA SPBC16G5.16 ; colour "7" ;
chromosome2 GeneDB CDS 4244498 4246860 . + . mRNA SPBC16G5.16 ; colour "7" ;
chromosome2 GeneDB misc_feature 4244090 4244095 . + . misc_feature unknown_3615 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4244347 4244359 . + . misc_feature unknown_3616 ; colour "6" ; note "ctaactttttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4244391 4244396 . + . misc_feature unknown_3617 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4244483 4244497 . + . misc_feature unknown_3618 ; colour "6" ; note "ctaactttgttgaag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4246861 4247092 . + . mRNA SPBC16G5.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.16" ; systematic_id "SPBC16G5.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4247589 4247817 . + . mRNA SPBC16G5.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.17" ; systematic_id "SPBC16G5.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4247818 4249500 . + . mRNA SPBC16G5.17 ; db_xref "SPD:45/45E09" ; systematic_id "SPBC16G5.17" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPAC3H8.08C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC16G5.17" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome2 GeneDB CDS 4247818 4249500 . + . mRNA SPBC16G5.17 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4249501 4249678 . + . mRNA SPBC16G5.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16G5.17" ; systematic_id "SPBC16G5.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4250030 4250066 . + . mRNA SPBC16G5.18 ; ID "SPBC16G5.18" ; systematic_id "SPBC16G5.18" ; note "mRNA from SPC14SR" ;
chromosome2 GeneDB CDS_parts 4250067 4251341 . + . mRNA SPBC16G5.18 ; systematic_id "SPBC16G5.18" ; colour "7" ; gene "erg24 ||| SPBC16G5.18" ; Alias "erg24" ; db_xref "SPD:40/40D08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL280C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0050613; delta14-sterol reductase activity
GO:0006696; ergosterol biosynthesis" ; primary_name "erg24" ; product "C-14 sterol reductase Erg24 (predicted)" ; EC_number "1.3.1.70" ;
chromosome2 GeneDB CDS 4250067 4251341 . + . mRNA SPBC16G5.18 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4251342 4251433 . + . mRNA SPBC16G5.18 ; ID "SPBC16G5.18" ; systematic_id "SPBC16G5.18" ; note "mRNA from SPC14SR" ;
chromosome2 GeneDB CDS_parts 4251907 4252224 . + . mRNA SPBC16G5.19 ; db_xref "SPD:51/51G02" ; systematic_id "SPBC16G5.19" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC16G5.19" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 4251907 4252224 . + . mRNA SPBC16G5.19 ; colour "8" ;
chromosome2 GeneDB misc_feature 4252836 4253286 . + . misc_feature unknown_3619 ; note "nominal overlap with cosmid SPBC16G5 and SPBC1652" ;
chromosome2 GeneDB CDS_parts 4253280 4254440 . + . mRNA SPBC1652.01 ; db_xref "SPD:18/18D01" ; systematic_id "SPBC1652.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR169C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0000432; positive regulation of transcription from RNA polymerase II promoter by glucose
GO:0043565; sequence-specific DNA binding
GO:0005634; nucleus
GO:0032569; gene-specific transcription from RNA polymerase II promoter" ; colour "7" ; gene "SPBC1652.01" ; product "ribosomal RNA processing element (RRPE)-binding protein (predicted)" ;
chromosome2 GeneDB CDS 4253280 4254440 . + . mRNA SPBC1652.01 ; colour "7" ;
chromosome2 GeneDB misc_RNA 4255755 4259164 . - . misc_RNA SPNCRNA.577 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.577" ; synonym "SPNG2AF42" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome2 GeneDB 5'-UTR 4256060 4256508 . + . mRNA SPBC1652.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1652.02" ; systematic_id "SPBC1652.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4256509 4258293 . + . mRNA SPBC1652.02 ; obsolete_name "aap1" ; db_xref "SPD:40/40F11" ; systematic_id "SPBC1652.02" ; synonym "SPBC16A3.20c" ; colour "7" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=warning, gene name conflict; cv=warning; date=20100126" ; product "APC amino acid transporter (predicted)" ;
chromosome2 GeneDB CDS 4256509 4258293 . + . mRNA SPBC1652.02 ; colour "7" ;
chromosome2 GeneDB misc_feature 4258225 4258289 . + . misc_feature unknown_3620 ; note "nominal overlap with cosmid SPBC1652 and cosmid SPBC16A3" ;
chromosome2 GeneDB 3'-UTR 4258294 4259360 . + . mRNA SPBC1652.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1652.02" ; systematic_id "SPBC1652.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4259910 4260348 . - . mRNA SPBC16A3.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.19" ; systematic_id "SPBC16A3.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4260349 4261319 . - . mRNA SPBC16A3.19 ; systematic_id "SPBC16A3.19" ; colour "2" ; gene "SPBC16A3.19 ||| eaf7" ; Alias "eaf7" ; db_xref "SPD:13/13H02" ; GO "GO:0035267; NuA4 histone acetyltransferase complex
GO:0005634; nucleus
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006281; DNA repair
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL136W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "eaf7" ; product "histone acetyltransferase complex subunit Eaf7" ;
chromosome2 GeneDB CDS 4260349 4260876 . - . mRNA SPBC16A3.19 ; colour "2" ;
chromosome2 GeneDB CDS 4260939 4261072 . - . mRNA SPBC16A3.19 ; colour "2" ;
chromosome2 GeneDB CDS 4261163 4261319 . - . mRNA SPBC16A3.19 ; colour "2" ;
chromosome2 GeneDB misc_feature 4260877 4260896 . - . misc_feature unknown_3621 ; colour "6" ; note "ttgacagttttttaaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4260933 4260938 . - . misc_feature unknown_3622 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4261073 4261087 . - . misc_feature unknown_3623 ; colour "6" ; note "ctaattaaaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4261157 4261162 . - . misc_feature unknown_3624 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4261318 4261448 . - . mRNA SPBC16A3.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.19" ; systematic_id "SPBC16A3.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4261944 4262472 . - . mRNA SPBC16A3.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.18" ; systematic_id "SPBC16A3.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 4262098 4262173 . + . misc_RNA SPNCRNA.114 ; systematic_id "SPNCRNA.114" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.114" ; product "non-coding RNA (predicted)" ; note "region duplicated in cosmid c750 S. pombe chromosome 1" ;
chromosome2 GeneDB CDS_parts 4262473 4263945 . - . mRNA SPBC16A3.18 ; systematic_id "SPBC16A3.18" ; colour "2" ; db_xref "SPD:23/23G04" ; Alias "cip1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16407405; date=19700101 ||| term=orthologous to S. cerevisiae YBL051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16407405; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:16407405; date=20090213 ||| term=name description, Csx1- interacting protein 1; cv=name_description; date=20091018" ; GO "GO:0005737; cytoplasm
GO:0003723; RNA binding
GO:0010610; regulation of mRNA stability involved in response to stress
GO:0034599; cellular response to oxidative stress" ; primary_name "cip1" ; product "RNA-binding protein Cip1" ;
chromosome2 GeneDB CDS 4262473 4263945 . - . mRNA SPBC16A3.18 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4263944 4264033 . - . mRNA SPBC16A3.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.18" ; systematic_id "SPBC16A3.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 4264196 4265389 . + . misc_RNA SPNCRNA.440 ; db_xref "PMID:18488015" ; synonym "SPNG1969" ; systematic_id "SPNCRNA.440" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 4265244 4265558 . + . mRNA SPBC16A3.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.17c" ; systematic_id "SPBC16A3.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4265559 4267358 . + . mRNA SPBC16A3.17c ; db_xref "SPD:36/36D12" ; systematic_id "SPBC16A3.17c" ; colour "7" ; GO "GO:0016021; integral to membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL069W and YGR224W and YPR198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC16A3.17c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 4265559 4267358 . + . mRNA SPBC16A3.17c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4267441 4267783 . - . mRNA SPBC16A3.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.16" ; systematic_id "SPBC16A3.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4267784 4268090 . - . mRNA SPBC16A3.16 ; systematic_id "SPBC16A3.16" ; colour "7" ; gene "SPBC16A3.16" ; note "was previusly annotated as cwc27 in error" ; obsolete_name "cwc27" ; db_xref "SPD:01/01E11" ; GO "GO:0008535; respiratory chain complex IV assembly
GO:0005739; mitochondrion
GO:0007005; mitochondrion organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR034W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "mitochondrial inner membrane protein involved in cytochrome c oxidase assembly Pet191 (predicted)" ;
chromosome2 GeneDB CDS 4267784 4267870 . - . mRNA SPBC16A3.16 ; colour "7" ;
chromosome2 GeneDB CDS 4267920 4268090 . - . mRNA SPBC16A3.16 ; colour "7" ;
chromosome2 GeneDB misc_feature 4267871 4267889 . - . misc_feature unknown_3625 ; colour "6" ; note "ctaaatggttataattcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4267914 4267919 . - . misc_feature unknown_3626 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4268089 4268156 . - . mRNA SPBC16A3.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.16" ; systematic_id "SPBC16A3.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4268920 4268990 . + . mRNA SPBC16A3.15c ; ID "SPBC16A3.15c" ; systematic_id "SPBC16A3.15c" ; note "mRNA from AU009648" ;
chromosome2 GeneDB CDS_parts 4268991 4270448 . + . mRNA SPBC16A3.15c ; systematic_id "SPBC16A3.15c" ; colour "2" ; gene "nda2 ||| SPBC16A3.15c" ; Alias "nda2" ; db_xref "SPD:33/33A08" ; GO "GO:0005874; microtubule
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0005525; GTP binding
GO:0005200; structural constituent of cytoskeleton
GO:0046982; protein heterodimerization activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=20070219 ||| term=orthologous to S. cerevisiae YML085C and YML124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nda2" ; product "tubulin alpha 1" ;
chromosome2 GeneDB CDS 4268991 4269045 . + . mRNA SPBC16A3.15c ; colour "2" ;
chromosome2 GeneDB CDS 4269136 4270448 . + . mRNA SPBC16A3.15c ; colour "2" ;
chromosome2 GeneDB misc_feature 4269046 4269051 . + . misc_feature unknown_3627 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 4269046 4269135 . + . intron SPBC16A3.15c ; systematic_id "SPBC16A3.15c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4269123 4269135 . + . misc_feature unknown_3628 ; colour "6" ; note "ctaacatttctag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4270449 4270685 . + . mRNA SPBC16A3.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.15c" ; systematic_id "SPBC16A3.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4271131 4271937 . - . mRNA SPBC16A3.14 ; db_xref "SPD:15/15F01" ; systematic_id "SPBC16A3.14" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR101W and YDR347W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome" ; gene "SPBC16A3.14" ; product "mitochondrial ribosomal protein subunit S26 (predicted)" ; EC_number "1.15.1.1" ;
chromosome2 GeneDB CDS 4271131 4271937 . - . mRNA SPBC16A3.14 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4271936 4272005 . - . mRNA SPBC16A3.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.14" ; systematic_id "SPBC16A3.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4272341 4274665 . - . mRNA SPBC16A3.13 ; systematic_id "SPBC16A3.13" ; colour "2" ; db_xref "SPD:28/28C12" ; Alias "meu7" ; synonym "aah4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, glycosylated; qualifier=N-linked; cv=pt_mod; date=20060611 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060611 ||| term=name description, Meiotic Expression Upregulated; db_xref=PMID:11376151; cv=name_description; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20080908 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=protein sequence feature, repeat containing; date=20100427 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=19700101" ; GO "GO:0009986; cell surface
GO:0009897; external side of plasma membrane
GO:0004556; alpha-amylase activity
GO:0008360; regulation of cell shape
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "meu7" ; product "alpha-amylase homolog Aah4" ; EC_number "3.2.1.1" ;
chromosome2 GeneDB CDS 4272341 4274665 . - . mRNA SPBC16A3.13 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4275226 4275256 . + . mRNA SPBC16A3.12c ; ID "SPBC16A3.12c" ; systematic_id "SPBC16A3.12c" ; note "mRNA from SPD249" ;
chromosome2 GeneDB CDS_parts 4275257 4276888 . + . mRNA SPBC16A3.12c ; db_xref "SPD:26/26A11" ; systematic_id "SPBC16A3.12c" ; colour "7" ; GO "GO:0016298; lipase activity
GO:0004771; sterol esterase activity
GO:0006629; lipid metabolism
GO:0006696; ergosterol metabolic process
GO:0044242; cellular lipid catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC16A3.12c" ; product "triglyceride lipase-cholesterol esterase (predicted)" ;
chromosome2 GeneDB CDS 4275257 4275288 . + . mRNA SPBC16A3.12c ; colour "7" ;
chromosome2 GeneDB CDS 4275339 4275762 . + . mRNA SPBC16A3.12c ; colour "7" ;
chromosome2 GeneDB CDS 4275915 4276302 . + . mRNA SPBC16A3.12c ; colour "7" ;
chromosome2 GeneDB CDS 4276350 4276699 . + . mRNA SPBC16A3.12c ; colour "7" ;
chromosome2 GeneDB CDS 4276751 4276888 . + . mRNA SPBC16A3.12c ; colour "7" ;
chromosome2 GeneDB misc_feature 4275289 4275294 . + . misc_feature unknown_3629 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB intron 4275289 4275338 . + . intron SPBC16A3.12c ; systematic_id "SPBC16A3.12c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4275325 4275338 . + . misc_feature unknown_3630 ; colour "6" ; note "ttaacgtgaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4275763 4275768 . + . misc_feature unknown_3631 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB intron 4275763 4275914 . + . intron SPBC16A3.12c ; systematic_id "SPBC16A3.12c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4275899 4275914 . + . misc_feature unknown_3632 ; colour "6" ; note "ctaacaatacatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4276303 4276308 . + . misc_feature unknown_3633 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 4276303 4276349 . + . intron SPBC16A3.12c ; systematic_id "SPBC16A3.12c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4276338 4276349 . + . misc_feature unknown_3634 ; colour "6" ; note "cttactctacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4276700 4276705 . + . misc_feature unknown_3635 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB intron 4276700 4276750 . + . intron SPBC16A3.12c ; systematic_id "SPBC16A3.12c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4276737 4276750 . + . misc_feature unknown_3636 ; colour "6" ; note "ctaatataagttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4276864 4276972 . - . mRNA SPBC16A3.11 ; ID "SPBC16A3.11" ; systematic_id "SPBC16A3.11" ; note "mRNA from AB039861" ;
chromosome2 GeneDB 3'-UTR 4276889 4277062 . + . mRNA SPBC16A3.12c ; ID "SPBC16A3.12c" ; systematic_id "SPBC16A3.12c" ; note "mRNA from SPD249" ;
chromosome2 GeneDB CDS_parts 4276973 4279591 . - . mRNA SPBC16A3.11 ; systematic_id "SPBC16A3.11" ; colour "2" ; gene "eso1 ||| SPBC16A3.11" ; Alias "eso1" ; db_xref "SPD:38/38F08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:10779336; date=20100727 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YDR419W (N-term); date=19700101 ||| term=orthologous to S. cerevisiae YFR027W (C-term); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20080807" ; GO "GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0003887; DNA-directed DNA polymerase activity
GO:0008415; acyltransferase activity
GO:0005515; protein binding
GO:0034182; regulation of maintenance of mitotic sister chromatid cohesion
GO:0006281; DNA repair
GO:0019985; translesion synthesis
GO:0034087; establishment of mitotic sister chromatid cohesion
GO:0006473; protein amino acid acetylation" ; primary_name "eso1" ; product "sister chromatid cohesion protein/DNA polymerase eta Eso1" ; EC_number "2.3.1.-" ;
chromosome2 GeneDB CDS 4276973 4279591 . - . mRNA SPBC16A3.11 ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4279592 4279656 . - . mRNA SPBC16A3.11 ; ID "SPBC16A3.11" ; systematic_id "SPBC16A3.11" ; note "mRNA from AB039861" ;
chromosome2 GeneDB 3'-UTR 4279875 4279995 . - . mRNA SPBC16A3.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.10" ; systematic_id "SPBC16A3.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4279996 4281525 . - . mRNA SPBC16A3.10 ; db_xref "SPD:24/24H02" ; systematic_id "SPBC16A3.10" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane
GO:0046474; glycerophospholipid biosynthetic process
GO:0003841; 1-acylglycerol-3-phosphate O- acyltransferase activity
GO:0006646; phosphatidyl ethanomine biosynthetic process
GO:0047184; 1-acylglycerophosphocholin O- acyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR175C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPBC16A3.10" ; product "membrane bound O-acyltransferase, MBOAT (predicted)" ;
chromosome2 GeneDB CDS 4279996 4281525 . - . mRNA SPBC16A3.10 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4281524 4281740 . - . mRNA SPBC16A3.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.10" ; systematic_id "SPBC16A3.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4282124 4282153 . + . mRNA SPBC16A3.09c ; ID "SPBC16A3.09c" ; systematic_id "SPBC16A3.09c" ; note "mRNA from SPO5825" ;
chromosome2 GeneDB CDS_parts 4282154 4283513 . + . mRNA SPBC16A3.09c ; systematic_id "SPBC16A3.09c" ; colour "7" ; gene "ufd1 ||| SPBC16A3.09c" ; Alias "ufd1" ; db_xref "SPD:40/40D12" ; GO "GO:0006511; ubiquitin-dependent protein catabolism
GO:0030433; ER-associated protein catabolism
GO:0005783; endoplasmic reticulum
GO:0034098; Cdc48p-Npl4p-Ufd1p AAA ATPase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, ubiquitin fusion degradation protein; cv=name_description; date=20091118" ; primary_name "ufd1" ; product "Cdc48-Ufd1-Npl4 complex component Ufd1 (predicted)" ;
chromosome2 GeneDB CDS 4282154 4282156 . + . mRNA SPBC16A3.09c ; colour "7" ;
chromosome2 GeneDB CDS 4282204 4282372 . + . mRNA SPBC16A3.09c ; colour "7" ;
chromosome2 GeneDB CDS 4282553 4282585 . + . mRNA SPBC16A3.09c ; colour "7" ;
chromosome2 GeneDB CDS 4282642 4282763 . + . mRNA SPBC16A3.09c ; colour "7" ;
chromosome2 GeneDB CDS 4282812 4283513 . + . mRNA SPBC16A3.09c ; colour "7" ;
chromosome2 GeneDB misc_feature 4282157 4282162 . + . misc_feature unknown_3637 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB intron 4282157 4282203 . + . intron SPBC16A3.09c ; systematic_id "SPBC16A3.09c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4282192 4282203 . + . misc_feature unknown_3638 ; colour "6" ; note "ctcacgtattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4282373 4282378 . + . misc_feature unknown_3639 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB intron 4282373 4282552 . + . intron SPBC16A3.09c ; systematic_id "SPBC16A3.09c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4282416 4282437 . + . misc_feature unknown_3640 ; colour "6" ; note "ttgattttatatactcatgaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4282484 4282489 . + . misc_feature unknown_3641 ; colour "6" ; note "gttaac, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4282536 4282552 . + . misc_feature unknown_3642 ; colour "6" ; note "ttaacaactacgtctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4282586 4282591 . + . misc_feature unknown_3643 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB intron 4282586 4282641 . + . intron SPBC16A3.09c ; systematic_id "SPBC16A3.09c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4282631 4282641 . + . misc_feature unknown_3644 ; colour "6" ; note "ttaactattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4282764 4282769 . + . misc_feature unknown_3645 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB intron 4282764 4282811 . + . intron SPBC16A3.09c ; systematic_id "SPBC16A3.09c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4282797 4282811 . + . misc_feature unknown_3646 ; colour "6" ; note "ctaactagggcacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4283514 4283614 . + . mRNA SPBC16A3.09c ; ID "SPBC16A3.09c" ; systematic_id "SPBC16A3.09c" ; note "mRNA from SPO5825" ;
chromosome2 GeneDB CDS_parts 4283938 4285122 . + . mRNA SPBC16A3.08c ; db_xref "SPD:18/18H01" ; systematic_id "SPBC16A3.08c" ; colour "7" ; GO "GO:0042162; telomeric DNA binding
GO:0000723; telomere maintenance
GO:0031929; TOR signaling pathway
GO:0006448; regulation of tranlational elongation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR150W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618" ; gene "SPBC16A3.08c" ; product "Stm1 homolog (predicted)" ;
chromosome2 GeneDB CDS 4283938 4283955 . + . mRNA SPBC16A3.08c ; colour "7" ;
chromosome2 GeneDB CDS 4284224 4284597 . + . mRNA SPBC16A3.08c ; colour "7" ;
chromosome2 GeneDB CDS 4284660 4285122 . + . mRNA SPBC16A3.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 4283956 4283961 . + . misc_feature unknown_3647 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB intron 4283956 4284223 . + . intron SPBC16A3.08c ; systematic_id "SPBC16A3.08c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4284209 4284223 . + . misc_feature unknown_3648 ; colour "6" ; note "gtaaccaaattatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4284598 4284603 . + . misc_feature unknown_3649 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB intron 4284598 4284659 . + . intron SPBC16A3.08c ; systematic_id "SPBC16A3.08c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4284644 4284659 . + . misc_feature unknown_3650 ; colour "6" ; note "ctaaccattattttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4285123 4285456 . + . mRNA SPBC16A3.08c ; ID "SPBC16A3.08c" ; systematic_id "SPBC16A3.08c" ; note "mRNA from AU011747" ;
chromosome2 GeneDB 5'-UTR 4285978 4286041 . + . mRNA SPBC16A3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.07c" ; systematic_id "SPBC16A3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4286042 4287070 . + . mRNA SPBC16A3.07c ; systematic_id "SPBC16A3.07c" ; colour "2" ; gene "nrm1 ||| SPBC16A3.07c" ; note "likely the functional homolog of the human pocket proteins p107 and p127, which are paralogs of Rb (pers. comm. Charly Chahwan)" ; Alias "nrm1" ; db_xref "SPD:15/15E09" ; GO "GO:0030907; MBF transcription complex
GO:0003714; transcription corepressor activity
GO:0060277; negative regulation of G1-specific transcription in mitotic cell cycle
GO:0010553; negative regulation of gene-specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by MBF complex; db_xref=PMID:16916637; cv=gene_ex; date=20060919 ||| term=orthologous to S. cerevisiae YNR009W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; db_xref=PMID:16916637; date=20100122" ; primary_name "nrm1" ; product "negative regulator of MBF" ;
chromosome2 GeneDB CDS 4286042 4287070 . + . mRNA SPBC16A3.07c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4287071 4288180 . + . mRNA SPBC16A3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.07c" ; systematic_id "SPBC16A3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4287241 4287360 . - . mRNA SPBC16A3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.06" ; systematic_id "SPBC16A3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4287361 4288668 . - . mRNA SPBC16A3.06 ; db_xref "SPD:22/22G05" ; systematic_id "SPBC16A3.06" ; colour "7" ; GO "GO:0008251; tRNA specific adenosine deaminase activity
GO:0006400; tRNA modification
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL243W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC16A3.06" ; product "tRNA specific adenosine deaminase (predicted)" ;
chromosome2 GeneDB CDS 4287361 4288228 . - . mRNA SPBC16A3.06 ; colour "7" ;
chromosome2 GeneDB CDS 4288287 4288376 . - . mRNA SPBC16A3.06 ; colour "7" ;
chromosome2 GeneDB CDS 4288419 4288433 . - . mRNA SPBC16A3.06 ; colour "7" ;
chromosome2 GeneDB CDS 4288475 4288668 . - . mRNA SPBC16A3.06 ; colour "7" ;
chromosome2 GeneDB misc_feature 4288229 4288245 . - . misc_feature unknown_3651 ; colour "6" ; note "ctaataaaagaattaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4288281 4288286 . - . misc_feature unknown_3652 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4288377 4288393 . - . misc_feature unknown_3653 ; colour "6" ; note "ttaacaagtcaatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4288413 4288418 . - . misc_feature unknown_3654 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4288434 4288446 . - . misc_feature unknown_3655 ; colour "6" ; note "ctgacatctaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4288469 4288474 . - . misc_feature unknown_3656 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4288667 4288894 . - . mRNA SPBC16A3.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.06" ; systematic_id "SPBC16A3.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4288945 4290472 . + . mRNA SPBC16A3.05c ; systematic_id "SPBC16A3.05c" ; colour "2" ; gene "rae1 ||| SPBC16A3.05c" ; Alias "rae1" ; db_xref "SPD:33/33B04" ; synonym "cut21" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YER107C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7706287; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016973; poly(A)+ mRNA export from nucleus
; nuclear pore
GO:0006606; protein import into nucleus
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0007094; mitotic spindle checkpoint
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000054; ribosome export from nucleus
GO:0055126; Nup82 complex" ; primary_name "rae1" ; product "RNA export factor, nucleoporin Rae1" ;
chromosome2 GeneDB CDS 4288945 4289016 . + . mRNA SPBC16A3.05c ; colour "2" ;
chromosome2 GeneDB CDS 4289067 4289143 . + . mRNA SPBC16A3.05c ; colour "2" ;
chromosome2 GeneDB CDS 4289563 4290472 . + . mRNA SPBC16A3.05c ; colour "2" ;
chromosome2 GeneDB misc_feature 4289017 4289022 . + . misc_feature unknown_3657 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4289052 4289066 . + . misc_feature unknown_3658 ; colour "6" ; note "ctaattacacgatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4289144 4289149 . + . misc_feature unknown_3659 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4289548 4289562 . + . misc_feature unknown_3660 ; colour "6" ; note "ctaactcaaagatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4290473 4290762 . + . mRNA SPBC16A3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.05c" ; systematic_id "SPBC16A3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4290925 4291025 . - . mRNA SPBC16A3.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.04" ; systematic_id "SPBC16A3.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4291026 4291688 . - . mRNA SPBC16A3.04 ; systematic_id "SPBC16A3.04" ; colour "7" ; gene "SPBC16A3.04 ||| rsm25" ; Alias "rsm25" ; db_xref "SPD:07/07F08" ; GO "GO:0003735; structural constituent of ribosome
GO:0005763; mitochondrial small ribosomal subunit
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL093C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rsm25" ; product "mitochondrial ribosomal protein subunit Rsm25 (predicted)" ;
chromosome2 GeneDB CDS 4291026 4291688 . - . mRNA SPBC16A3.04 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4291687 4291918 . - . mRNA SPBC16A3.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.04" ; systematic_id "SPBC16A3.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4293290 4293596 . + . mRNA SPBC16A3.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.03c" ; systematic_id "SPBC16A3.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4293597 4295573 . + . mRNA SPBC16A3.03c ; systematic_id "SPBC16A3.03c" ; colour "8" ; gene "lyn1 ||| SPBC16A3.03c" ; db_xref "SPD:27/27C02" ; Alias "lyn1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Late cYtokiNesis; cv=name_description; date=20100126" ; primary_name "lyn1" ; product "sequence orphan" ; reserved_name "lyn1" ;
chromosome2 GeneDB CDS 4293597 4295573 . + . mRNA SPBC16A3.03c ; colour "8" ;
chromosome2 GeneDB 3'-UTR 4295574 4295935 . + . mRNA SPBC16A3.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.03c" ; systematic_id "SPBC16A3.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 4296668 4297025 . - . LTR unknown_3661 ; colour "4" ; note "tf1 like LTR" ;
chromosome2 GeneDB 5'-UTR 4297416 4297583 . + . mRNA SPBC16A3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16A3.02c" ; systematic_id "SPBC16A3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4297584 4298627 . + . mRNA SPBC16A3.02c ; db_xref "SPD:15/15H01" ; systematic_id "SPBC16A3.02c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008233; peptidase activity
GO:0006627; mitochondrial protein processing
GO:0005743; mitochondrial inner membrane
GO:0005737; cytoplasm
GO:0004024; alcohol dehydrogenase activity, zinc- dependent" ; gene "SPBC16A3.02c" ; product "mitochondrial peptidase (predicted)" ; EC_number "1.6.5.5" ;
chromosome2 GeneDB CDS 4297584 4298627 . + . mRNA SPBC16A3.02c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4298628 4298874 . + . mRNA SPBC16A3.02c ; ID "SPBC16A3.02c" ; systematic_id "SPBC16A3.02c" ; note "mRNA from AU010033" ;
chromosome2 GeneDB CDS_parts 4299042 4300569 . - . mRNA SPBC16A3.01 ; systematic_id "SPBC16A3.01" ; colour "2" ; gene "spn3 ||| SPBC16A3.01 ||| SPBC543.01c" ; Alias "spn3" ; db_xref "SPD:33/33B05" ; synonym "SPBC543.01c" ; GO "GO:0005525; GTP binding
GO:0031105; septin complex
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0005940; septin ring" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15385632; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; db_xref=PMID:15385632; date=20100726 ||| term=orthologous to S. cerevisiae YJR076C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "spn3" ; product "septin Spn3" ;
chromosome2 GeneDB CDS 4299042 4299794 . - . mRNA SPBC16A3.01 ; colour "2" ;
chromosome2 GeneDB CDS 4299858 4300036 . - . mRNA SPBC16A3.01 ; colour "2" ;
chromosome2 GeneDB CDS 4300263 4300569 . - . mRNA SPBC16A3.01 ; colour "2" ;
chromosome2 GeneDB misc_feature 4299315 4299397 . + . misc_feature unknown_3662 ; note "nominal overlap with SPBC16A3 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 4299795 4299811 . - . misc_feature unknown_3663 ; colour "6" ; note "ctaacaatcactcatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4299795 4299857 . - . intron SPBC16A3.01 ; systematic_id "SPBC16A3.01" ; note "Intron confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 4299852 4299857 . - . misc_feature unknown_3664 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4300037 4300052 . - . misc_feature unknown_3665 ; colour "6" ; note "ctaacgaaaactaaag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4300037 4300262 . - . intron SPBC16A3.01 ; systematic_id "SPBC16A3.01" ; note "Intron confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 4300257 4300262 . - . misc_feature unknown_3666 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4300570 4300961 . - . mRNA SPBC16A3.01 ; ID "SPBC16A3.01" ; systematic_id "SPBC16A3.01" ; note "mRNA from SP29889" ;
chromosome2 GeneDB CDS_parts 4301185 4302615 . - . mRNA SPBC543.02c ; db_xref "SPD:33/33A05" ; systematic_id "SPBC543.02c" ; colour "10" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPBC543.02c" ; product "DNAJ/TPR domain protein DNAJC7 family" ;
chromosome2 GeneDB CDS 4301185 4302615 . - . mRNA SPBC543.02c ; colour "10" ;
chromosome2 GeneDB 5'-UTR 4302614 4302696 . - . mRNA SPBC543.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.02c" ; systematic_id "SPBC543.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4303136 4303140 . - . mRNA SPBC543.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.03c" ; systematic_id "SPBC543.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4303141 4305367 . - . mRNA SPBC543.03c ; systematic_id "SPBC543.03c" ; colour "2" ; gene "pku80 ||| SPBC543.03c" ; Alias "pku80" ; db_xref "SPD:39/39F09" ; GO "GO:0006303; double-strand break repair via nonhomologous end joining
GO:0000723; telomere maintenance
GO:0000084; S phase of mitotic cell cycle
GO:0000781; chromosome, telomeric region
GO:0042162; telomeric DNA binding
GO:0000723; telomere maintenance
GO:0046982; protein heterodimerization activity
GO:0004003; ATP-dependent DNA helicase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YMR106C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pku80" ; product "Ku domain protein Pku80" ;
chromosome2 GeneDB CDS 4303141 4304977 . - . mRNA SPBC543.03c ; colour "2" ;
chromosome2 GeneDB CDS 4305018 4305084 . - . mRNA SPBC543.03c ; colour "2" ;
chromosome2 GeneDB CDS 4305140 4305194 . - . mRNA SPBC543.03c ; colour "2" ;
chromosome2 GeneDB CDS 4305239 4305367 . - . mRNA SPBC543.03c ; colour "2" ;
chromosome2 GeneDB misc_feature 4304978 4304993 . - . misc_feature unknown_3667 ; colour "6" ; note "ttaacttcttaactag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4304978 4305017 . - . intron SPBC543.03c ; systematic_id "SPBC543.03c" ; note "Intron confirmed by TSE" ;
chromosome2 GeneDB misc_feature 4305012 4305017 . - . misc_feature unknown_3668 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4305085 4305104 . - . misc_feature unknown_3669 ; colour "6" ; note "ctaacttttacggtgtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4305134 4305139 . - . misc_feature unknown_3670 ; colour "6" ; note "gtattc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4305195 4305209 . - . misc_feature unknown_3671 ; colour "6" ; note "ttgacacatactcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4305233 4305238 . - . misc_feature unknown_3672 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4305366 4305394 . - . mRNA SPBC543.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.03c" ; systematic_id "SPBC543.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4305886 4306028 . + . mRNA SPBC543.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.04" ; systematic_id "SPBC543.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4306029 4307851 . + . mRNA SPBC543.04 ; db_xref "SPD:33/33E02" ; systematic_id "SPBC543.04" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human NPRL3 ortholog; date=20100720" ; GO "GO:0032006; regulation of TOR signaling pathway
GO:0034198; cellular response to amino acid starvation" ; gene "SPBC543.04" ; product "Npr2/3 complex subunit Npr3 (predicted)" ;
chromosome2 GeneDB CDS 4306029 4307092 . + . mRNA SPBC543.04 ; colour "7" ;
chromosome2 GeneDB CDS 4307158 4307851 . + . mRNA SPBC543.04 ; colour "7" ;
chromosome2 GeneDB misc_feature 4307093 4307098 . + . misc_feature unknown_3673 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4307139 4307157 . + . misc_feature unknown_3674 ; colour "6" ; note "ctaacttacaatatttcag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4307852 4307866 . + . mRNA SPBC543.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.04" ; systematic_id "SPBC543.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4307975 4308055 . - . mRNA SPBC543.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.05c" ; systematic_id "SPBC543.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4308056 4309824 . - . mRNA SPBC543.05c ; db_xref "SPD:39/39F01" ; systematic_id "SPBC543.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL275W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0046715; boron transmembrane transporter activity
GO:0035445; boron transmembrane transport" ; product "HC03 family inorganic anion exchanger (predicted)" ;
chromosome2 GeneDB CDS 4308056 4308379 . - . mRNA SPBC543.05c ; colour "7" ;
chromosome2 GeneDB CDS 4308433 4308777 . - . mRNA SPBC543.05c ; colour "7" ;
chromosome2 GeneDB CDS 4308816 4309251 . - . mRNA SPBC543.05c ; colour "7" ;
chromosome2 GeneDB CDS 4309309 4309608 . - . mRNA SPBC543.05c ; colour "7" ;
chromosome2 GeneDB CDS 4309676 4309824 . - . mRNA SPBC543.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 4308380 4308394 . - . misc_feature unknown_3675 ; colour "6" ; note "ctaactgaattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4308427 4308432 . - . misc_feature unknown_3676 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4308778 4308790 . - . misc_feature unknown_3677 ; colour "6" ; note "ttaacattagtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4308810 4308815 . - . misc_feature unknown_3678 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4309252 4309268 . - . misc_feature unknown_3679 ; colour "6" ; note "ctaattgaaaactgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4309303 4309308 . - . misc_feature unknown_3680 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4309609 4309621 . - . misc_feature unknown_3681 ; colour "6" ; note "ctaaacttgctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4309670 4309675 . - . misc_feature unknown_3682 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4309823 4309846 . - . mRNA SPBC543.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.05c" ; systematic_id "SPBC543.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4310239 4311756 . - . mRNA SPBC543.06c ; systematic_id "SPBC543.06c" ; colour "7" ; gene "dbp8 ||| SPBC543.06c" ; Alias "dbp8" ; db_xref "SPD:33/33B02" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YHR169W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dbp8" ; product "ATP-dependent RNA helicase Dbp8 (predicted)" ;
chromosome2 GeneDB CDS 4310239 4311346 . - . mRNA SPBC543.06c ; colour "7" ;
chromosome2 GeneDB CDS 4311436 4311559 . - . mRNA SPBC543.06c ; colour "7" ;
chromosome2 GeneDB CDS 4311627 4311756 . - . mRNA SPBC543.06c ; colour "7" ;
chromosome2 GeneDB misc_feature 4311347 4311359 . - . misc_feature unknown_3683 ; colour "6" ; note "ctaactcgaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4311430 4311435 . - . misc_feature unknown_3684 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4311560 4311580 . - . misc_feature unknown_3685 ; colour "6" ; note "ctaacaaataaaaatttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4311621 4311626 . - . misc_feature unknown_3686 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4311755 4311772 . - . mRNA SPBC543.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.06c" ; systematic_id "SPBC543.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4312489 4312762 . + . mRNA SPBC543.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.07" ; systematic_id "SPBC543.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4312763 4313854 . + . mRNA SPBC543.07 ; systematic_id "SPBC543.07" ; colour "2" ; db_xref "SPD:32/32E04" ; Alias "pek1" ; synonym "skh1 ||| mkk1" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mkh1-Pek1-Spm1 MAP kinase; cv=pathway; db_xref=PMID:10591634; date=19700101 ||| term=orthologous to S. cerevisiae YOR231W and YPL140C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10365961; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0000165; MAPKKK cascade
GO:0004708; MAP kinase kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0008360; regulation of cell shape
GO:0006883; sodium ion homeostasis
GO:0033205; cell cycle cytokinesis
GO:0005737; cytoplasm
GO:0030428; cell septum
GO:0031505; cell wall organization and biogenesis
GO:0050850; positive regulation of calcium- mediated signaling
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "pek1" ; product "MAP kinase kinase Pek1" ;
chromosome2 GeneDB CDS 4312763 4313854 . + . mRNA SPBC543.07 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4313855 4313973 . + . mRNA SPBC543.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.07" ; systematic_id "SPBC543.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4314415 4314487 . + . mRNA SPBC543.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.08" ; systematic_id "SPBC543.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4314488 4315240 . + . mRNA SPBC543.08 ; db_xref "SPD:31/31H06" ; systematic_id "SPBC543.08" ; colour "7" ; GO "GO:0006644; phospholipid metabolism
GO:0005789; endoplasmic reticulum membrane
GO:0046489; phosphoinositide biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL126W and YDR319C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC543.08" ; product "phosphoinositide biosynthesis protein (predicted)" ;
chromosome2 GeneDB CDS 4314488 4315240 . + . mRNA SPBC543.08 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4315241 4315511 . + . mRNA SPBC543.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.08" ; systematic_id "SPBC543.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4315843 4316287 . + . mRNA SPBC543.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.09" ; systematic_id "SPBC543.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4316288 4318609 . + . mRNA SPBC543.09 ; db_xref "SPD:33/33G06" ; systematic_id "SPBC543.09" ; colour "7" ; GO "GO:0005745; m-AAA complex
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0008237; metallopeptidase activity
GO:0033108; mitochondrial respiratory chain complex assembly
GO:0045041; protein import into mitochondrial intermembrane space
GO:0006465; signal peptide processing
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YMR089C and YER017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, dominent ataxia SCA28; date=20100420" ; gene "SPBC543.09" ; product "mitochondrial m-AAA protease (predicted)" ;
chromosome2 GeneDB CDS 4316288 4318609 . + . mRNA SPBC543.09 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4318610 4318755 . + . mRNA SPBC543.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.09" ; systematic_id "SPBC543.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4318925 4318946 . + . mRNA SPBC543.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.10" ; systematic_id "SPBC543.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4318947 4319603 . + . mRNA SPBC543.10 ; systematic_id "SPBC543.10" ; colour "7" ; gene "SPBC543.10 ||| get1" ; Alias "get1" ; db_xref "SPD:31/31G05" ; GO "GO:0043529; GET complex
GO:0005783; endoplasmic reticulum
GO:0006874; calcium ion homeostasis
GO:0034620; cellular response to unfolded protein
GO:0045048; protein insertion into ER membrane
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=human chd5 ortholog; date=19700101 ||| term=disease associated, congenital heart disease; date=19700101 ||| term=orthologous to S. cerevisiae YGL020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "get1" ; product "GET complex subunit Get1 (predicted)" ;
chromosome2 GeneDB CDS 4318947 4319033 . + . mRNA SPBC543.10 ; colour "7" ;
chromosome2 GeneDB CDS 4319082 4319448 . + . mRNA SPBC543.10 ; colour "7" ;
chromosome2 GeneDB CDS 4319542 4319603 . + . mRNA SPBC543.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 4319034 4319039 . + . misc_feature unknown_3687 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4319067 4319081 . + . misc_feature unknown_3688 ; colour "6" ; note "ctaataatgtgaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4319449 4319454 . + . misc_feature unknown_3689 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4319526 4319541 . + . misc_feature unknown_3690 ; colour "6" ; note "ctaacatggcatgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4319604 4320075 . + . mRNA SPBC543.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC543.10" ; systematic_id "SPBC543.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4320120 4321541 . - . mRNA SPBC16C6.01c ; systematic_id "SPBC16C6.01c" ; colour "10" ; gene "SPBC543.11c ||| SPBC16C6.01c" ; Alias "SPBC543.11c" ; db_xref "SPD:33/33A04" ; synonym "SPBC543.11c" ; GO "GO:0016279; protein-lysine N-methyltransferase activity
GO:0006479; protein amino acid methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "SPBC543.11c" ; product "lysine methyltransferase (predicted)" ;
chromosome2 GeneDB CDS 4320120 4321541 . - . mRNA SPBC16C6.01c ; colour "10" ;
chromosome2 GeneDB misc_feature 4320242 4320341 . + . misc_feature unknown_3691 ; note "nominal overlap with cosmid c16C6" ;
chromosome2 GeneDB 5'-UTR 4321540 4321619 . - . mRNA SPBC16C6.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.01c" ; systematic_id "SPBC16C6.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4322024 4322220 . - . mRNA SPBC16C6.14 ; ID "SPBC16C6.14" ; systematic_id "SPBC16C6.14" ; note "mRNA from SPD192" ;
chromosome2 GeneDB CDS_parts 4322221 4322622 . - . mRNA SPBC16C6.14 ; Alias "spo2" ; systematic_id "SPBC16C6.14" ; colour "2" ; GO "GO:0005824; outer plaque of spindle pole body
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030437; ascospore formation
GO:0031322; ascospore-type prospore-specific spindle pole body modification
GO:0034613; cellular protein localization" ; controlled_curation "term=species distribution, no apparent orthologs; date=20070115 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18367542; date=20080402 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=gene expression, expressed during meiosis; qualifier=specifically; db_xref=PMID:1836754; date=20101020" ; gene "SPBC16C6.14 ||| spo2" ; primary_name "spo2" ; product "sporulation specific protein Spo2" ;
chromosome2 GeneDB CDS 4322221 4322622 . - . mRNA SPBC16C6.14 ; colour "2" ;
chromosome2 GeneDB misc_feature 4322743 4322754 . - . misc_feature unknown_3692 ; colour "6" ; note "ttaactgaatag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 4322829 4332028 . - . mRNA SPBC16C6.02c ; systematic_id "SPBC16C6.02c" ; colour "7" ; gene "vps1302 ||| vps13b ||| SPBC16C6.02c" ; Alias "vps1302" ; db_xref "SPD:34/34D07" ; synonym "vps13b" ; GO "GO:0005768; endosome
GO:0006886; intracellular protein transport
GO:0045324; late endosome to vacuole transport
GO:0045053; protein retention in Golgi" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, chorea- acanthocytosis; date=19700101 ||| term=UBA domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YLL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps1302" ; product "chorein homolog (predicted)" ;
chromosome2 GeneDB CDS 4322829 4331555 . - . mRNA SPBC16C6.02c ; colour "7" ;
chromosome2 GeneDB CDS 4331641 4331793 . - . mRNA SPBC16C6.02c ; colour "7" ;
chromosome2 GeneDB CDS 4331856 4331968 . - . mRNA SPBC16C6.02c ; colour "7" ;
chromosome2 GeneDB CDS 4332007 4332028 . - . mRNA SPBC16C6.02c ; colour "7" ;
chromosome2 GeneDB misc_feature 4331556 4331571 . - . misc_feature unknown_3693 ; colour "6" ; note "ctaaccatatttatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4331635 4331640 . - . misc_feature unknown_3694 ; colour "6" ; note "gtaggg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4331794 4331809 . - . misc_feature unknown_3695 ; colour "6" ; note "ctaataaaattgttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4331850 4331855 . - . misc_feature unknown_3696 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4331969 4331980 . - . misc_feature unknown_3697 ; colour "6" ; note "ctaacgaaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4332001 4332006 . - . misc_feature unknown_3698 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 4332698 4333123 . - . mRNA SPBC16C6.03c ; db_xref "SPD:09/09E06" ; systematic_id "SPBC16C6.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL193W; attribution=pers. comm. E. Hartsuiker; date=20080116 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20080202" ; GO "GO:0000027; ribosomal large subunit assembly" ; colour "7" ; gene "SPBC16C6.03c" ; product "ribosome assembly protein (predicted)" ;
chromosome2 GeneDB CDS 4332698 4333123 . - . mRNA SPBC16C6.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4334049 4334149 . + . mRNA SPBC16C6.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.04" ; systematic_id "SPBC16C6.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4334150 4335202 . + . mRNA SPBC16C6.04 ; db_xref "SPD:16/16B02" ; systematic_id "SPBC16C6.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC16C6.04" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 4334150 4335202 . + . mRNA SPBC16C6.04 ; colour "8" ;
chromosome2 GeneDB 3'-UTR 4335203 4335205 . + . mRNA SPBC16C6.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.04" ; systematic_id "SPBC16C6.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4335587 4335618 . + . mRNA SPBC16C6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.05" ; systematic_id "SPBC16C6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4335619 4336244 . + . mRNA SPBC16C6.05 ; db_xref "SPD:07/07B04" ; systematic_id "SPBC16C6.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPBC16C6.05" ; product "mitochondrial translation initiation factor (predicted)" ;
chromosome2 GeneDB CDS 4335619 4335687 . + . mRNA SPBC16C6.05 ; colour "7" ;
chromosome2 GeneDB CDS 4335741 4336244 . + . mRNA SPBC16C6.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 4335688 4335693 . + . misc_feature unknown_3699 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4335720 4335740 . + . misc_feature unknown_3700 ; colour "6" ; note "ttaactatgaatgcgttgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4336245 4336410 . + . mRNA SPBC16C6.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.05" ; systematic_id "SPBC16C6.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4337012 4341452 . + . mRNA SPBC16C6.06 ; systematic_id "SPBC16C6.06" ; colour "2" ; db_xref "SPD:48/48G06" ; Alias "vps10" ; synonym "pep1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBL017C and YNR065C and YJL222W and YIL173W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0007034; Golgi to vacuole transport
GO:0005794; Golgi apparatus
GO:0006623; protein targeting to vacuole
GO:0005048; signal sequence binding" ; primary_name "vps10" ; product "sorting receptor for vacuolar proteins, Vps10" ;
chromosome2 GeneDB CDS 4337012 4337185 . + . mRNA SPBC16C6.06 ; colour "2" ;
chromosome2 GeneDB CDS 4337226 4341452 . + . mRNA SPBC16C6.06 ; colour "2" ;
chromosome2 GeneDB misc_feature 4337186 4337191 . + . misc_feature unknown_3701 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4337209 4337225 . + . misc_feature unknown_3702 ; colour "6" ; note "ctaataatctcgtacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4341453 4341528 . + . mRNA SPBC16C6.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.06" ; systematic_id "SPBC16C6.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4341639 4341800 . - . mRNA SPBC16C6.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.07c" ; systematic_id "SPBC16C6.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4341801 4343368 . - . mRNA SPBC16C6.07c ; systematic_id "SPBC16C6.07c" ; colour "7" ; gene "rpt1 ||| SPBC16C6.07c" ; Alias "rpt1" ; db_xref "SPD:45/45B07" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0004175; endopeptidase activity
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YKL145W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpt1" ; product "19S proteasome regulatory subunit Rpt1 (predicted)" ;
chromosome2 GeneDB CDS 4341801 4342921 . - . mRNA SPBC16C6.07c ; colour "7" ;
chromosome2 GeneDB CDS 4343117 4343198 . - . mRNA SPBC16C6.07c ; colour "7" ;
chromosome2 GeneDB CDS 4343255 4343368 . - . mRNA SPBC16C6.07c ; colour "7" ;
chromosome2 GeneDB misc_feature 4342922 4342935 . - . misc_feature unknown_3703 ; colour "6" ; note "ctaactagccctag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4343111 4343116 . - . misc_feature unknown_3704 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4343199 4343214 . - . misc_feature unknown_3705 ; colour "6" ; note "ctaaatgtcaatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4343249 4343254 . - . misc_feature unknown_3706 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 4344388 4344556 . - . mRNA SPBC16C6.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.08c" ; systematic_id "SPBC16C6.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4344557 4345430 . - . mRNA SPBC16C6.08c ; systematic_id "SPBC16C6.08c" ; colour "7" ; gene "qcr6 ||| SPBC16C6.08c" ; Alias "qcr6" ; db_xref "SPD:11/11G12" ; GO "GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0008121; ubiquinol-cytochrome-c reductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "qcr6" ; product "ubiquinol-cytochrome-c reductase complex subunit 8, hinge protein (predicted)" ;
chromosome2 GeneDB CDS 4344557 4344735 . - . mRNA SPBC16C6.08c ; colour "7" ;
chromosome2 GeneDB CDS 4344783 4344971 . - . mRNA SPBC16C6.08c ; colour "7" ;
chromosome2 GeneDB CDS 4345028 4345099 . - . mRNA SPBC16C6.08c ; colour "7" ;
chromosome2 GeneDB CDS 4345226 4345430 . - . mRNA SPBC16C6.08c ; colour "7" ;
chromosome2 GeneDB misc_feature 4344736 4344749 . - . misc_feature unknown_3707 ; colour "6" ; note "ctaacattttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4344777 4344782 . - . misc_feature unknown_3708 ; colour "6" ; note "gttcgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4344972 4344991 . - . misc_feature unknown_3709 ; colour "6" ; note "ttaatcatgggattgttcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4345022 4345027 . - . misc_feature unknown_3710 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4345100 4345114 . - . misc_feature unknown_3711 ; colour "6" ; note "ctaataatgtggtag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4345100 4345225 . - . intron SPBC16C6.08c ; systematic_id "SPBC16C6.08c" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 4345220 4345225 . - . misc_feature unknown_3712 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4345429 4345543 . - . mRNA SPBC16C6.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.08c" ; systematic_id "SPBC16C6.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4346585 4346651 . + . mRNA SPBC16C6.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.09" ; systematic_id "SPBC16C6.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4346652 4348988 . + . mRNA SPBC16C6.09 ; systematic_id "SPBC16C6.09" ; colour "2" ; note "O-glycoside mannosyltransferase 4" ; Alias "ogm4" ; db_xref "SPD:46/46G12" ; synonym "oma4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PMT family; date=19700101 ||| term=PMT4 subfamily; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR143C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15809069; date=19700101 ||| term=phenotype, sensitive to hygromycin 4; cv=phenotype; db_xref=PMID:15809069; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; GO "GO:0004169; dolichyl-phosphate-mannose-protein mannosyltransferase activity
GO:0035269; protein amino acid O-linked mannosylation
GO:0035269; protein amino acid O-linked mannosylation
GO:0005789; endoplasmic reticulum membrane
GO:0000752; agglutination during conjugation with cellular fusion
GO:0012505; endomembrane system
GO:0031502; dolichyl-phosphate-mannose-protein mannosyltransferase complex
GO:0046982; protein heterodimerization activity
GO:0000032; cell wall mannoprotein biosynthesis
GO:0071937; barrier septum formation involved in cell cycle cytokinesis" ; primary_name "ogm4" ; product "protein O-mannosyltransferase Ogm4" ; EC_number "2.4.1.109" ;
chromosome2 GeneDB CDS 4346652 4348988 . + . mRNA SPBC16C6.09 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4348989 4349272 . + . mRNA SPBC16C6.09 ; ID "SPBC16C6.09" ; systematic_id "SPBC16C6.09" ; note "mRNA from AU007697" ;
chromosome2 GeneDB 5'-UTR 4349614 4349994 . + . mRNA SPBC16C6.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.10" ; systematic_id "SPBC16C6.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4349995 4351174 . + . mRNA SPBC16C6.10 ; systematic_id "SPBC16C6.10" ; colour "2" ; gene "chp2 ||| SPBC16C6.10" ; Alias "chp2" ; db_xref "SPD:32/32F02" ; GO "GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0000790; nuclear chromatin
GO:0005721; centric heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0031493; nucleosomal histone binding
; nucleosomal histone binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=chromodomain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CBX1 and CBX3 and CBX5 ortholog; qualifier=predicted; date=20100826" ; primary_name "chp2" ; product "chromodomain protein 2" ;
chromosome2 GeneDB CDS 4349995 4350558 . + . mRNA SPBC16C6.10 ; colour "2" ;
chromosome2 GeneDB CDS 4350596 4351174 . + . mRNA SPBC16C6.10 ; colour "2" ;
chromosome2 GeneDB misc_feature 4350559 4350564 . + . misc_feature unknown_3713 ; colour "6" ; note "gtgcgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4350584 4350595 . + . misc_feature unknown_3714 ; colour "6" ; note "ctaaccatgtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4351175 4351207 . + . mRNA SPBC16C6.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.10" ; systematic_id "SPBC16C6.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB promoter 4351829 4351838 . + . promoter unknown_3715 ; colour "4" ; note "Homol D box" ;
chromosome2 GeneDB 5'-UTR 4351867 4351895 . + . mRNA SPBC16C6.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.11" ; systematic_id "SPBC16C6.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4351896 4352279 . + . mRNA SPBC16C6.11 ; systematic_id "SPBC16C6.11" ; colour "2" ; gene "rpl3201 ||| rpl32-1 ||| SPBC16C6.11" ; Alias "rpl3201" ; db_xref "SPD:39/39G09" ; synonym "rpl32-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL092W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl3201" ; product "60S ribosomal protein L32" ;
chromosome2 GeneDB CDS 4351896 4352279 . + . mRNA SPBC16C6.11 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4352280 4352308 . + . mRNA SPBC16C6.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.11" ; systematic_id "SPBC16C6.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4352580 4352662 . - . mRNA SPBC16C6.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.12c" ; systematic_id "SPBC16C6.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4352663 4354075 . - . mRNA SPBC16C6.12c ; db_xref "SPD:21/21G08" ; systematic_id "SPBC16C6.12c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR063C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC16C6.12c" ; product "Las1-like protein" ;
chromosome2 GeneDB CDS 4352663 4354075 . - . mRNA SPBC16C6.12c ; colour "10" ;
chromosome2 GeneDB 3'-UTR 4354232 4354567 . - . mRNA SPBC16C6.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.13c" ; systematic_id "SPBC16C6.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 4354471 4354963 . + . misc_feature unknown_3716 ; note "nominal overlap with cosmid SPBC16C6 and cosmid SPBC244" ;
chromosome2 GeneDB CDS_parts 4354568 4357020 . - . mRNA SPBC16C6.13c ; systematic_id "SPBC16C6.13c" ; colour "7" ; gene "sec27 ||| SPBC16C6.13c" ; Alias "sec27" ; obsolete_name "SPBC244.03" ; db_xref "SPD:28/28G08" ; GO "GO:0030126; COPI vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec27" ; product "coatomer beta' subunit (predicted)" ;
chromosome2 GeneDB CDS 4354568 4356937 . - . mRNA SPBC16C6.13c ; colour "7" ;
chromosome2 GeneDB CDS 4357000 4357020 . - . mRNA SPBC16C6.13c ; colour "7" ;
chromosome2 GeneDB misc_feature 4356938 4356957 . - . misc_feature unknown_3717 ; colour "6" ; note "ctaacaatctttatatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4356994 4356999 . - . misc_feature unknown_3718 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4357019 4357145 . - . mRNA SPBC16C6.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC16C6.13c" ; systematic_id "SPBC16C6.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 4357348 4357692 . + . misc_RNA SPNCRNA.441 ; db_xref "PMID:18488015" ; synonym "SPNG1981" ; systematic_id "SPNCRNA.441" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 4357918 4357992 . + . mRNA SPBC244.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC244.02c" ; systematic_id "SPBC244.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4357993 4359459 . + . mRNA SPBC244.02c ; db_xref "SPD:23/23F03" ; systematic_id "SPBC244.02c" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HAT repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDR449C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC244.02c" ; product "U3 snoRNP-associated protein Utp6 (predicted)" ;
chromosome2 GeneDB CDS 4357993 4359459 . + . mRNA SPBC244.02c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4359460 4359583 . + . mRNA SPBC244.02c ; ID "SPBC244.02c" ; systematic_id "SPBC244.02c" ; note "mRNA from AU006480" ;
chromosome2 GeneDB 5'-UTR 4360092 4360639 . + . mRNA SPBC244.01c ; ID "SPBC244.01c" ; systematic_id "SPBC244.01c" ; note "mRNA from AU012142" ;
chromosome2 GeneDB CDS_parts 4360640 4362842 . + . mRNA SPBC244.01c ; systematic_id "SPBC244.01c" ; colour "2" ; gene "sid4 ||| SPBC244.01c" ; Alias "sid4" ; db_xref "SPD:37/37H11" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005198; structural molecule activity
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0031028; septation initiation signaling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9649519; date=20100727 ||| term=phenotype, multinucleate; db_xref=PMID:9649519; date=20100727 ||| term=phenotype, septum initiation defective; cv=phenotype; db_xref=PMID:9649519; date=20091006 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=name description, Septum Initiation Defective; db_xref=PMID:9649519; cv=name_description; date=20091006 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106 ||| term=orthologous to S. cerevisiae YDL239C and YNL225C; date=20091106" ; primary_name "sid4" ; product "SIN component scaffold protein Sid4" ;
chromosome2 GeneDB CDS 4360640 4360754 . + . mRNA SPBC244.01c ; colour "2" ;
chromosome2 GeneDB CDS 4360975 4362842 . + . mRNA SPBC244.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 4360755 4360760 . + . misc_feature unknown_3719 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4360961 4360974 . + . misc_feature unknown_3720 ; colour "6" ; note "ctaatattatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4362763 4362839 . + . misc_feature unknown_3721 ; colour "4" ; note "SPBC1539.12 (sid4) CDS contained within cosmid SPBC244, EM:AL023779 S.pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 4362763 4362870 . - . misc_feature unknown_3722 ; note "nominal overlap with cosmid SPBC244, EM:AL023779 S. pombe chromosome 2" ;
chromosome2 GeneDB misc_feature 4362763 4362870 . + . misc_feature unknown_3723 ; note "nominal overlap with cosmid SPBC1539, EM:AL096874 S. pombe chromosome 2" ;
chromosome2 GeneDB 3'-UTR 4362975 4363049 . - . mRNA SPBC1539.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1539.01c" ; systematic_id "SPBC1539.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4363050 4363682 . - . mRNA SPBC1539.01c ; db_xref "SPD:42/42E12" ; systematic_id "SPBC1539.01c" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0004540; ribonuclease activity
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Ribonuclease_3 family; date=19700101 ||| term=orthologous to S. cerevisiae YLR312W-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1539.01c" ; product "mitochondrial ribosomal protein subunit L15 (predicted)" ;
chromosome2 GeneDB CDS 4363050 4363682 . - . mRNA SPBC1539.01c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4363681 4363750 . - . mRNA SPBC1539.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1539.01c" ; systematic_id "SPBC1539.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4364016 4365176 . + . mRNA SPBC1539.02 ; db_xref "SPD:18/18D02" ; systematic_id "SPBC1539.02" ; colour "10" ; GO "GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080925 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1539.02" ; product "conserved eukaryotic nuclear protein implicated in meiotic chromosome segregation" ;
chromosome2 GeneDB CDS 4364016 4365176 . + . mRNA SPBC1539.02 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 4365346 4365384 . - . mRNA SPBC1539.03c ; ID "SPBC1539.03c" ; systematic_id "SPBC1539.03c" ; note "mRNA from AU013992" ;
chromosome2 GeneDB CDS_parts 4365385 4366767 . - . mRNA SPBC1539.03c ; db_xref "SPD:32/32H10" ; systematic_id "SPBC1539.03c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006526; arginine biosynthesis
GO:0004056; argininosuccinate lyase activity
GO:0005829; cytosol
GO:0000050; urea cycle" ; gene "SPBC1539.03c" ; product "argininosuccinate lyase (predicted)" ; EC_number "4.3.2.1" ;
chromosome2 GeneDB CDS 4365385 4366767 . - . mRNA SPBC1539.03c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4366766 4366829 . - . mRNA SPBC1539.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1539.03c" ; systematic_id "SPBC1539.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 4367233 4368175 . + . misc_RNA SPNCRNA.442 ; db_xref "PMID:18488015" ; synonym "SPNG1982" ; systematic_id "SPNCRNA.442" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 5'-UTR 4368367 4368388 . + . mRNA SPBC1539.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1539.04" ; systematic_id "SPBC1539.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4368389 4369414 . + . mRNA SPBC1539.04 ; systematic_id "SPBC1539.04" ; colour "2" ; db_xref "SPD:15/15D12" ; Alias "tts1" ; GO "GO:0016021; integral to membrane
GO:0032541; cortical endoplasmic reticulum
GO:0005635; nuclear envelope
GO:0032153; cell division site
GO:0034613; cellular protein localization
; site selection involved in cell cycle cytokinesis
GO:0071786; endoplasmic reticulum tubular network organization
GO:0071790; establishment of spindle pole body localization at the nuclear envelope
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cytokinesis defects; db_xref=PMID:20434336; cv=phenotype; date=20100517 ||| term=orthologous to S. cerevisiae YLL023C and YLR064W; date=19700101 ||| term=human TMEM33 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, TeTra Spanning protein; db_xref=PMID:20434336; cv=name_description; date=20100517 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101" ; primary_name "tts1" ; product "tetra spanning protein 1, Tts1" ;
chromosome2 GeneDB CDS 4368389 4368448 . + . mRNA SPBC1539.04 ; colour "2" ;
chromosome2 GeneDB CDS 4368635 4369414 . + . mRNA SPBC1539.04 ; colour "2" ;
chromosome2 GeneDB misc_feature 4368449 4368454 . + . misc_feature unknown_3724 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4368618 4368634 . + . misc_feature unknown_3725 ; colour "6" ; note "ctaaccgtttattatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4369415 4369742 . + . mRNA SPBC1539.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1539.04" ; systematic_id "SPBC1539.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4370000 4372478 . + . mRNA SPBC1539.05 ; systematic_id "SPBC1539.05" ; colour "7" ; gene "SPBC1539.05 ||| cog3" ; Alias "cog3" ; db_xref "SPD:46/46H08" ; GO "GO:0006886; intracellular protein transport
GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER157W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cog3" ; product "Golgi transport complex subunit Cog3 (predicted)" ;
chromosome2 GeneDB CDS 4370000 4370068 . + . mRNA SPBC1539.05 ; colour "7" ;
chromosome2 GeneDB CDS 4370111 4370512 . + . mRNA SPBC1539.05 ; colour "7" ;
chromosome2 GeneDB CDS 4370563 4370733 . + . mRNA SPBC1539.05 ; colour "7" ;
chromosome2 GeneDB CDS 4370774 4370911 . + . mRNA SPBC1539.05 ; colour "7" ;
chromosome2 GeneDB CDS 4370967 4371197 . + . mRNA SPBC1539.05 ; colour "7" ;
chromosome2 GeneDB CDS 4371241 4371777 . + . mRNA SPBC1539.05 ; colour "7" ;
chromosome2 GeneDB CDS 4371819 4372478 . + . mRNA SPBC1539.05 ; colour "7" ;
chromosome2 GeneDB misc_feature 4370069 4370074 . + . misc_feature unknown_3726 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4370098 4370110 . + . misc_feature unknown_3727 ; colour "6" ; note "cttacccaattag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4370513 4370518 . + . misc_feature unknown_3728 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4370547 4370562 . + . misc_feature unknown_3729 ; colour "6" ; note "ctaacaccttgaacag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4370734 4370739 . + . misc_feature unknown_3730 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4370762 4370773 . + . misc_feature unknown_3731 ; colour "6" ; note "ctgactttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4370912 4370917 . + . misc_feature unknown_3732 ; colour "6" ; note "gtaggc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4370952 4370966 . + . misc_feature unknown_3733 ; colour "6" ; note "ttaacaactatttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4371198 4371203 . + . misc_feature unknown_3734 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4371226 4371240 . + . misc_feature unknown_3735 ; colour "6" ; note "ctaatgataccgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4371778 4371783 . + . misc_feature unknown_3736 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4371805 4371818 . + . misc_feature unknown_3737 ; colour "6" ; note "ttaacagtttttag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4372479 4372545 . + . mRNA SPBC1539.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1539.05" ; systematic_id "SPBC1539.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4372823 4372916 . + . mRNA SPBC1539.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1539.06" ; systematic_id "SPBC1539.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4372917 4373237 . + . mRNA SPBC1539.06 ; db_xref "SPD:01/01G01" ; systematic_id "SPBC1539.06" ; colour "7" ; GO "GO:0000062; acyl-CoA binding
GO:0006631; fatty acid metabolism
GO:0005634; nucleus
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR037C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1539.06" ; product "acyl-coenzyme A binding protein (predicted)" ;
chromosome2 GeneDB CDS 4372917 4372994 . + . mRNA SPBC1539.06 ; colour "7" ;
chromosome2 GeneDB CDS 4373052 4373237 . + . mRNA SPBC1539.06 ; colour "7" ;
chromosome2 GeneDB misc_feature 4372995 4373000 . + . misc_feature unknown_3738 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome2 GeneDB intron 4372995 4373051 . + . intron SPBC1539.06 ; systematic_id "SPBC1539.06" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4373035 4373051 . + . misc_feature unknown_3739 ; colour "6" ; note "ctaatttgttgtactag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4373238 4373432 . + . mRNA SPBC1539.06 ; ID "SPBC1539.06" ; systematic_id "SPBC1539.06" ; note "mRNA from AU006701" ;
chromosome2 GeneDB 3'-UTR 4373541 4373674 . - . mRNA SPBC1539.07c ; ID "SPBC1539.07c" ; systematic_id "SPBC1539.07c" ; note "mRNA from SPD220" ;
chromosome2 GeneDB CDS_parts 4373675 4375075 . - . mRNA SPBC1539.07c ; db_xref "SPD:21/21F09" ; systematic_id "SPBC1539.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0033554; cellular response to stress
GO:0046294; formaldehyde catabolism
GO:0051903; S-(hydroxymethyl)glutathione dehydrogenase activity" ; gene "SPBC1539.07c" ; product "glutathione-dependent formaldehyde dehydrogenase (predicted)" ; EC_number "1.1.1.284" ;
chromosome2 GeneDB CDS 4373675 4374734 . - . mRNA SPBC1539.07c ; colour "7" ;
chromosome2 GeneDB CDS 4374842 4374885 . - . mRNA SPBC1539.07c ; colour "7" ;
chromosome2 GeneDB CDS 4375043 4375075 . - . mRNA SPBC1539.07c ; colour "7" ;
chromosome2 GeneDB intron 4374735 4374841 . - . intron SPBC1539.07c ; systematic_id "SPBC1539.07c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4374836 4374841 . - . misc_feature unknown_3740 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4374886 4374904 . - . misc_feature unknown_3741 ; colour "6" ; note "ctaataacattcgttttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4374886 4375042 . - . intron SPBC1539.07c ; systematic_id "SPBC1539.07c" ; note "confirmed intron" ;
chromosome2 GeneDB misc_feature 4375037 4375042 . - . misc_feature unknown_3742 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4375076 4375131 . - . mRNA SPBC1539.07c ; ID "SPBC1539.07c" ; systematic_id "SPBC1539.07c" ; note "mRNA from SPD220" ;
chromosome2 GeneDB 5'-UTR 4375736 4375856 . + . mRNA SPBC1539.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1539.08" ; systematic_id "SPBC1539.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4375857 4376810 . + . mRNA SPBC1539.08 ; systematic_id "SPBC1539.08" ; colour "2" ; gene "SPBC1539.08 ||| arf6" ; Alias "arf6" ; db_xref "SPD:13/13E01" ; GO "GO:0000139; Golgi membrane
GO:0030428; cell septum
GO:0051286; cell tip
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0006886; intracellular protein transport
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR094W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18060866; date=20080123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arf6" ; product "ADP-ribosylation factor, Arf family Arf6" ;
chromosome2 GeneDB CDS 4375857 4375962 . + . mRNA SPBC1539.08 ; colour "2" ;
chromosome2 GeneDB CDS 4376062 4376092 . + . mRNA SPBC1539.08 ; colour "2" ;
chromosome2 GeneDB CDS 4376295 4376367 . + . mRNA SPBC1539.08 ; colour "2" ;
chromosome2 GeneDB CDS 4376423 4376621 . + . mRNA SPBC1539.08 ; colour "2" ;
chromosome2 GeneDB CDS 4376665 4376810 . + . mRNA SPBC1539.08 ; colour "2" ;
chromosome2 GeneDB misc_feature 4375963 4375968 . + . misc_feature unknown_3743 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4376050 4376061 . + . misc_feature unknown_3744 ; colour "6" ; note "ttaacattttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4376093 4376098 . + . misc_feature unknown_3745 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4376284 4376294 . + . misc_feature unknown_3746 ; colour "6" ; note "ctaacagccag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4376368 4376373 . + . misc_feature unknown_3747 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4376408 4376422 . + . misc_feature unknown_3748 ; colour "6" ; note "ttgatttgtttgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4376622 4376627 . + . misc_feature unknown_3749 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4376650 4376664 . + . misc_feature unknown_3750 ; colour "6" ; note "ctaacactatggtag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4376811 4377001 . + . mRNA SPBC1539.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1539.08" ; systematic_id "SPBC1539.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4377125 4377220 . - . mRNA SPBC1539.09c ; Alias "trp1" ; ID "SPBC1539.09c" ; db_xref "EMBL:Y09137" ; systematic_id "SPBC1539.09c" ; primary_name "trp1" ;
chromosome2 GeneDB CDS_parts 4377221 4379500 . - . mRNA SPBC1539.09c ; systematic_id "SPBC1539.09c" ; colour "7" ; gene "trp1 ||| SPBC1539.09c" ; db_xref "SPD:33/33G02" ; Alias "trp1" ; GO "GO:0004049; anthranilate synthase activity
GO:0004425; indole-3-glycerol-phosphate synthase activity
GO:0000162; tryptophan biosynthetic process
GO:0005950; anthranilate synthase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, multifunctional enzyme; cv=cat_act; date=19700101 ||| term=orthologous to S. cerevisiae YKL211C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "trp1" ; product "anthranilate synthase component II (predicted)" ; EC_number "4.1.3.27 ||| 4.1.1.48" ;
chromosome2 GeneDB CDS 4377221 4379500 . - . mRNA SPBC1539.09c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4379501 4379523 . - . mRNA SPBC1539.09c ; Alias "trp1" ; ID "SPBC1539.09c" ; db_xref "EMBL:Y09137" ; systematic_id "SPBC1539.09c" ; primary_name "trp1" ;
chromosome2 GeneDB 5'-UTR 4380469 4380485 . + . mRNA SPBC1539.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1539.10" ; systematic_id "SPBC1539.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4380486 4381237 . + . mRNA SPBC1539.10 ; systematic_id "SPBC1539.10" ; colour "7" ; gene "nop16 ||| SPBC1539.10" ; Alias "nop16" ; db_xref "SPD:09/09C03" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER002W; date=19700101 ||| term=human hspc111 and hspc185 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nop16" ; product "ribosome biogenesis protein Nop16 (predicted)" ;
chromosome2 GeneDB CDS 4380486 4380631 . + . mRNA SPBC1539.10 ; colour "7" ;
chromosome2 GeneDB CDS 4380754 4381237 . + . mRNA SPBC1539.10 ; colour "7" ;
chromosome2 GeneDB misc_feature 4380632 4380637 . + . misc_feature unknown_3751 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4380739 4380753 . + . misc_feature unknown_3752 ; colour "6" ; note "ttaacaaataaatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4381455 4381639 . - . mRNA SPBC1289.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.01c" ; systematic_id "SPBC1289.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4381640 4383541 . - . mRNA SPBC1289.01c ; systematic_id "SPBC1289.01c" ; colour "2" ; gene "SPBC1539.11c ||| SPBC1289.01c ||| chr4 ||| cfh3" ; Alias "chr4" ; db_xref "SPD:46/46B04" ; synonym "cfh3 ||| SPBC1539.11c" ; GO "GO:0000148; 1,3-beta-glucan synthase complex
GO:0046658; anchored to plasma membrane
GO:0000935; barrier septum
GO:0051286; cell tip
GO:0043495; protein anchor
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0034613; cellular protein localization
GO:0032951; regulation of beta-glucan biosynthetic process
GO:0090093; regulation of fungal cell wall beta- glucan glucan synthesis
GO:0090093; regulation of fungal cell wall beta- glucan glucan synthesis
GO:0010962; regulation of glucan biosynthetic process
GO:0071470; cellular response to osmotic stress" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:15449309; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, glucan synthesis defective; qualifier=deletion; cv=phenotype; db_xref=PMID:19237545; date=20090428 ||| term=phenotype, sensitive to glucan synthate inhibitor; qualifier=deletion; cv=phenotype; db_xref=PMID:19237545; date=20090428 ||| term=phenotype, sensitive to osmotic stress; qualifier=deletion; cv=phenotype; db_xref=PMID:19237545; date=20090428 ||| term=name description, Chs Four Homologue; cv=name_description; db_xref=PMID:19237545; date=20060106 ||| term=SEL1 repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL061C and YDL203C and YER096W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, prenylated; cv=pt_mod; db_xref=PMID:19237545; date=20090428" ; primary_name "chr4" ; product "1,3-beta-glucan synthase regulatory factor Chf3/Chr4" ;
chromosome2 GeneDB CDS 4381640 4383541 . - . mRNA SPBC1289.01c ; colour "2" ;
chromosome2 GeneDB misc_feature 4382560 4382682 . + . misc_feature unknown_3753 ; note "nominal overlap with cosmid SPBC1289, EM:AL035675 S. pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 4383540 4383768 . - . mRNA SPBC1289.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.01c" ; systematic_id "SPBC1289.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4384096 4384280 . - . mRNA SPBC1289.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.02c" ; systematic_id "SPBC1289.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4384281 4385557 . - . mRNA SPBC1289.02c ; systematic_id "SPBC1289.02c" ; colour "2" ; gene "uap2 ||| SPBC1289.02c" ; Alias "uap2" ; db_xref "SPD:32/32G04" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9371883; date=19700101 ||| term=orthologous to S. cerevisiae YNL286W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "uap2" ; product "U2 snRNP-associated protein Uap2" ;
chromosome2 GeneDB CDS 4384281 4384704 . - . mRNA SPBC1289.02c ; colour "2" ;
chromosome2 GeneDB CDS 4384816 4385387 . - . mRNA SPBC1289.02c ; colour "2" ;
chromosome2 GeneDB CDS 4385450 4385557 . - . mRNA SPBC1289.02c ; colour "2" ;
chromosome2 GeneDB misc_feature 4384705 4384718 . - . misc_feature unknown_3754 ; colour "6" ; note "ctaacaggttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4384810 4384815 . - . misc_feature unknown_3755 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4385388 4385400 . - . misc_feature unknown_3756 ; colour "6" ; note "ctaactaaacaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4385444 4385449 . - . misc_feature unknown_3757 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4385556 4385585 . - . mRNA SPBC1289.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.02c" ; systematic_id "SPBC1289.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4386149 4386346 . - . mRNA SPBC1289.03c ; ID "SPBC1289.03c" ; systematic_id "SPBC1289.03c" ; note "mRNA from AU007071" ;
chromosome2 GeneDB CDS_parts 4386347 4387316 . - . mRNA SPBC1289.03c ; systematic_id "SPBC1289.03c" ; colour "2" ; gene "spi1 ||| SPBC1289.03c" ; Alias "spi1" ; db_xref "SPD:40/40B10" ; GO "GO:0005634; nucleus
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005515; protein binding
GO:0031291; Ran protein signal transduction
GO:0006913; nucleocytoplasmic transport
GO:0007346; regulation of progression through mitotic cell cycle
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR185C and YLR293C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Suppressor of PIm; cv=name_description; date=20091018 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "spi1" ; product "Ran GTPase Spi1" ;
chromosome2 GeneDB CDS 4386347 4386684 . - . mRNA SPBC1289.03c ; colour "2" ;
chromosome2 GeneDB CDS 4386819 4387005 . - . mRNA SPBC1289.03c ; colour "2" ;
chromosome2 GeneDB CDS 4387191 4387316 . - . mRNA SPBC1289.03c ; colour "2" ;
chromosome2 GeneDB misc_feature 4386685 4386698 . - . misc_feature unknown_3758 ; colour "6" ; note "ctaatcgaatgcag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4386685 4386818 . - . intron SPBC1289.03c ; systematic_id "SPBC1289.03c" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 4386813 4386818 . - . misc_feature unknown_3759 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4387006 4387020 . - . misc_feature unknown_3760 ; colour "6" ; note "ctaacatatttttag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4387006 4387190 . - . intron SPBC1289.03c ; systematic_id "SPBC1289.03c" ; note "confirmed by mRNA" ;
chromosome2 GeneDB misc_feature 4387185 4387190 . - . misc_feature unknown_3761 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4387315 4387341 . - . mRNA SPBC1289.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.03c" ; systematic_id "SPBC1289.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4387838 4388342 . - . mRNA SPBC1289.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.04c" ; systematic_id "SPBC1289.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4388343 4391153 . - . mRNA SPBC1289.04c ; systematic_id "SPBC1289.04c" ; colour "2" ; gene "pob1 ||| SPBC1289.04c" ; Alias "pob1" ; db_xref "SPD:33/33H12" ; GO "GO:0000920; cell separation during cytokinesis
GO:0051285; cell cortex of cell tip
GO:0031097; medial ring
GO:0008360; regulation of cell shape" ; controlled_curation "term=phenotype, inviable; cv=phenotype; db_xref=PMID:10436025; date=19700101 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15195092; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YBL085W and YER114C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, cell morphology, stubby cells; qualifier=ts; db_xref=PMID:10436025; date=20100826 ||| term=phenotype, cell morphology, lemon shaped; qualifier=ts; db_xref=PMID:10436025; date=20100826 ||| term=phenotype, cell morphology, swollen cells; qualifier=overexpression; db_xref=PMID:10436025; date=20100826" ; primary_name "pob1" ; product "Boi family protein" ;
chromosome2 GeneDB CDS 4388343 4390826 . - . mRNA SPBC1289.04c ; colour "2" ;
chromosome2 GeneDB CDS 4391022 4391153 . - . mRNA SPBC1289.04c ; colour "2" ;
chromosome2 GeneDB misc_feature 4390827 4390844 . - . misc_feature unknown_3762 ; colour "6" ; note "ctaactaagttttaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4391016 4391021 . - . misc_feature unknown_3763 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4391152 4391192 . - . mRNA SPBC1289.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.04c" ; systematic_id "SPBC1289.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4391989 4392090 . - . mRNA SPBC1289.05c ; ID "SPBC1289.05c" ; systematic_id "SPBC1289.05c" ; note "mRNA from AB016047" ;
chromosome2 GeneDB CDS_parts 4392091 4392610 . - . mRNA SPBC1289.05c ; systematic_id "SPBC1289.05c" ; colour "7" ; db_xref "SPD:42/42C02" ; Alias "vma10" ; GO "GO:0000221; vacuolar proton-translocating V-type ATPase, V1 domain
GO:0005524; ATP binding
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR039C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vma10" ; product "V-type ATPase V1 domain subunit G (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB CDS 4392091 4392231 . - . mRNA SPBC1289.05c ; colour "7" ;
chromosome2 GeneDB CDS 4392288 4392388 . - . mRNA SPBC1289.05c ; colour "7" ;
chromosome2 GeneDB CDS 4392432 4392474 . - . mRNA SPBC1289.05c ; colour "7" ;
chromosome2 GeneDB CDS 4392522 4392560 . - . mRNA SPBC1289.05c ; colour "7" ;
chromosome2 GeneDB CDS 4392608 4392610 . - . mRNA SPBC1289.05c ; colour "7" ;
chromosome2 GeneDB misc_feature 4392232 4392243 . - . misc_feature unknown_3764 ; colour "6" ; note "ttaacatatcag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4392282 4392287 . - . misc_feature unknown_3765 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4392389 4392403 . - . misc_feature unknown_3766 ; colour "6" ; note "ctaaaagataaaaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4392426 4392431 . - . misc_feature unknown_3767 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4392475 4392490 . - . misc_feature unknown_3768 ; colour "6" ; note "ctaatgagatatgtag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4392516 4392521 . - . misc_feature unknown_3769 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4392561 4392575 . - . misc_feature unknown_3770 ; colour "6" ; note "ctgacttctttttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4392602 4392607 . - . misc_feature unknown_3771 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4392609 4392624 . - . mRNA SPBC1289.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.05c" ; systematic_id "SPBC1289.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 4392759 4393200 . - . misc_RNA SPNCRNA.443 ; db_xref "PMID:18488015" ; synonym "SPNG1984-85" ; systematic_id "SPNCRNA.443" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB 3'-UTR 4393665 4393945 . - . mRNA SPBC1289.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.06c" ; systematic_id "SPBC1289.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4393946 4395436 . - . mRNA SPBC1289.06c ; db_xref "SPD:24/24A11" ; systematic_id "SPBC1289.06c" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC1289.06c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 4393946 4395211 . - . mRNA SPBC1289.06c ; colour "8" ;
chromosome2 GeneDB CDS 4395257 4395436 . - . mRNA SPBC1289.06c ; colour "8" ;
chromosome2 GeneDB misc_feature 4395212 4395226 . - . misc_feature unknown_3772 ; colour "6" ; note "ctaacaggtaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4395251 4395256 . - . misc_feature unknown_3773 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 3'-UTR 4395978 4396052 . - . mRNA SPBC1289.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.07c" ; systematic_id "SPBC1289.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4396053 4397099 . - . mRNA SPBC1289.07c ; systematic_id "SPBC1289.07c" ; colour "2" ; gene "rpc40 ||| SPBC1289.07c ||| rpa42" ; Alias "rpc40" ; db_xref "SPD:32/32D03" ; synonym "rpa42" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0005666; DNA-directed RNA polymerase III complex
GO:0006360; transcription from RNA polymerase I promoter
GO:0006383; transcription from RNA polymerase III promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpc40" ; product "DNA-directed RNA polymerase I and III subunit Rpc40" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB CDS 4396053 4397099 . - . mRNA SPBC1289.07c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4397299 4397339 . + . mRNA SPBC1289.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.08" ; systematic_id "SPBC1289.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4397340 4398767 . + . mRNA SPBC1289.08 ; systematic_id "SPBC1289.08" ; colour "7" ; gene "qri1 ||| uap1 ||| SPBC1289.08" ; Alias "uap1" ; db_xref "SPD:22/22A01" ; synonym "qri1" ; GO "GO:0006048; UDP-N-acetylglucosamine biosynthesis
GO:0003977; UDP-N-acetylglucosamine diphosphorylase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL103C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "uap1" ; product "UDP-N-acetylglucosamine diphosphorylase Uap1/Qri1(predicted)" ; EC_number "2.7.7.23" ;
chromosome2 GeneDB CDS 4397340 4398767 . + . mRNA SPBC1289.08 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4398768 4398783 . + . mRNA SPBC1289.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.08" ; systematic_id "SPBC1289.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4399320 4399991 . + . mRNA SPBC1289.09 ; systematic_id "SPBC1289.09" ; colour "7" ; gene "tim21 ||| SPBC1289.09" ; db_xref "SPD:07/07G04" ; Alias "tim21" ; GO "GO:0030150; protein import into mitochondrial matrix
GO:0005744; mitochondrial inner membrane presequence translocase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Translocase of the Inner Membrane; cv=name_description; date=20100107" ; primary_name "tim21" ; product "TIM23 translocase complex subunit Tim21 (predicted)" ;
chromosome2 GeneDB CDS 4399320 4399991 . + . mRNA SPBC1289.09 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4399992 4400375 . + . mRNA SPBC1289.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.09" ; systematic_id "SPBC1289.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4400435 4400615 . - . mRNA SPBC1289.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.10c" ; systematic_id "SPBC1289.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4400616 4402847 . - . mRNA SPBC1289.10c ; systematic_id "SPBC1289.10c" ; colour "7" ; gene "SPBC1289.10c ||| adn2" ; Alias "adn2" ; db_xref "SPD:38/38B02" ; GO "GO:0003697; DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0010811; positive regulation of cell substrate adhesion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER109C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, ADhesioN defective; db_xref=PMID:19542312; date=20090629 ||| term=phenotype, adhesion defects, cell-substrate adhesion, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706" ; primary_name "adn2" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB CDS 4400616 4402847 . - . mRNA SPBC1289.10c ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4402846 4402851 . - . mRNA SPBC1289.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.10c" ; systematic_id "SPBC1289.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4404447 4404560 . + . mRNA SPBC1289.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.11" ; systematic_id "SPBC1289.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4404561 4405817 . + . mRNA SPBC1289.11 ; systematic_id "SPBC1289.11" ; colour "2" ; gene "spf38 ||| SPBC1289.11 ||| cwf17" ; Alias "spf38" ; db_xref "SPD:20/20B01" ; synonym "cwf17" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spf38" ; product "splicing factor Spf38" ;
chromosome2 GeneDB CDS 4404561 4404605 . + . mRNA SPBC1289.11 ; colour "2" ;
chromosome2 GeneDB CDS 4404647 4404751 . + . mRNA SPBC1289.11 ; colour "2" ;
chromosome2 GeneDB CDS 4404790 4404862 . + . mRNA SPBC1289.11 ; colour "2" ;
chromosome2 GeneDB CDS 4404912 4405171 . + . mRNA SPBC1289.11 ; colour "2" ;
chromosome2 GeneDB CDS 4405217 4405460 . + . mRNA SPBC1289.11 ; colour "2" ;
chromosome2 GeneDB CDS 4405522 4405817 . + . mRNA SPBC1289.11 ; colour "2" ;
chromosome2 GeneDB misc_feature 4404606 4404611 . + . misc_feature unknown_3774 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4404634 4404646 . + . misc_feature unknown_3775 ; colour "6" ; note "ctaatataaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4404752 4404757 . + . misc_feature unknown_3776 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4404778 4404789 . + . misc_feature unknown_3777 ; colour "6" ; note "ctaacgctttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4404863 4404868 . + . misc_feature unknown_3778 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4404897 4404911 . + . misc_feature unknown_3779 ; colour "6" ; note "ataactgtggtttag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4405172 4405177 . + . misc_feature unknown_3780 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4405206 4405216 . + . misc_feature unknown_3781 ; colour "6" ; note "ctaaatttaag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4405461 4405466 . + . misc_feature unknown_3782 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4405500 4405521 . + . misc_feature unknown_3783 ; colour "6" ; note "ctaatgctattttaatttatag, splice branch and acceptor" ;
chromosome2 GeneDB CDS_parts 4406049 4407107 . + . mRNA SPBC1289.12 ; systematic_id "SPBC1289.12" ; colour "2" ; gene "usp109 ||| SPBC1289.12" ; Alias "usp109" ; db_xref "SPD:16/16C04" ; GO "GO:0003723; RNA binding
GO:0005685; snRNP U1
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17264129; date=20070201 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "usp109" ; product "U1 snRNP-associated protein Usp109" ;
chromosome2 GeneDB CDS 4406049 4407107 . + . mRNA SPBC1289.12 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4407108 4407195 . + . mRNA SPBC1289.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.12" ; systematic_id "SPBC1289.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4407363 4408060 . - . mRNA SPBC1289.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.13c" ; systematic_id "SPBC1289.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4408061 4409188 . - . mRNA SPBC1289.13c ; db_xref "SPD:17/17G01" ; systematic_id "SPBC1289.13c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0042125; protein amino acid galactosylation" ; gene "SPBC1289.13c" ; product "alpha-1,2-galactosyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB CDS 4408061 4409188 . - . mRNA SPBC1289.13c ; colour "7" ;
chromosome2 GeneDB misc_feature 4409153 4426814 . + . misc_feature unknown_3784 ; note "nominal overlap with cosmid SPBC1289, EM:AL035675 S. pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 4409187 4409670 . - . mRNA SPBC1289.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC1289.13c" ; systematic_id "SPBC1289.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 4409793 4410139 . + . LTR unknown_3785 ; colour "4" ; note "partially degraded Tf2-type LTR ||| Tf1 LTR" ;
chromosome2 GeneDB CDS_parts 4412376 4413350 . + . mRNA SPBC1289.14 ; systematic_id "SPBC1289.14" ; colour "7" ; gene "SPBC1289.14 ||| SPBC8E4.10c" ; db_xref "SPD:14/14A03" ; synonym "SPBC8E4.10c" ; GO "GO:0005856; cytoskeleton
GO:0007010; cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "adducin (predicted)" ;
chromosome2 GeneDB CDS 4412376 4413350 . + . mRNA SPBC1289.14 ; colour "7" ;
chromosome2 GeneDB LTR 4414197 4414489 . + . LTR unknown_3786 ; note "Tf2-type LTR" ;
chromosome2 GeneDB misc_feature 4414197 4419057 . + . misc_feature Tf2-11 ; db_xref "SO:0000186" ; systematic_id "Tf2-11" ; note "LTR-retrotransposon" ;
chromosome2 GeneDB misc_feature 4414302 4419057 . + . misc_feature unknown_3787 ; note "LTR-retrotransposon" ;
chromosome2 GeneDB CDS_parts 4414657 4418658 . + . mRNA SPBC1289.17 ; systematic_id "SPBC1289.17" ; colour "4" ; gene "SPBC1289.17 ||| Tf2-11" ; Alias "Tf2-11" ; obsolete_name "tf2-1 ||| SPBC8E4.11c" ; synonym "SPBC8E4.11c" ; controlled_curation "term=tf2-type transposon; date=19700101" ; GO "GO:0005634; nucleus" ; primary_name "Tf2-11" ; product "retrotransposable element" ;
chromosome2 GeneDB CDS 4414657 4418658 . + . mRNA SPBC1289.17 ; colour "4" ;
chromosome2 GeneDB LTR 4418709 4419057 . + . LTR unknown_3788 ; colour "4" ; note "tf2 type LTR ||| Highly similar to tf2 LTR" ;
chromosome2 GeneDB CDS_parts 4421413 4425264 . + . mRNA SPBC1289.15 ; systematic_id "SPBC1289.15" ; colour "12" ; gene "SPBC1289.15 ||| SPBC8E4.07c" ; note "26 copies of a 35 amino acid repeat" ; db_xref "SPD:48/48F02" ; synonym "SPBC8E4.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; GO "GO:0009986; cell surface
GO:0005576; extracellular region
GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; product "cell surface glycoprotein (predicted)" ;
chromosome2 GeneDB CDS 4421413 4425264 . + . mRNA SPBC1289.15 ; colour "12" ;
chromosome2 GeneDB conflict 4423683 4423683 . + . conflict unknown_3789 ; citation "[1]" ; note "Base changed from an A - G to agree with c1289 sequence" ;
chromosome2 GeneDB conflict 4424101 4424101 . + . conflict unknown_3790 ; citation "[1]" ; note "Base changed from A - G to agree with c1289 sequence" ;
chromosome2 GeneDB conflict 4424127 4424127 . + . conflict unknown_3791 ; citation "[1]" ; note "Base changed from G - T to agree with c1289 sequence" ;
chromosome2 GeneDB CDS_parts 4426235 4428619 . - . mRNA SPBC1289.16c ; systematic_id "SPBC1289.16c" ; colour "10" ; gene "SPBC1289.16c ||| SPBC8E4.06" ; note "no amine oxidase activity detected when expressed in S. cerevisiae PMID:16946276" ; Alias "cao2" ; db_xref "SPD:46/46H02" ; synonym "SPBC8E4.06 ||| spao2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005507; copper ion binding
GO:0008131; amine oxidase activity
GO:0048038; quinone binding" ; primary_name "cao2" ; product "copper amine oxidase-like protein Cao2" ;
chromosome2 GeneDB CDS 4426235 4428619 . - . mRNA SPBC1289.16c ; colour "10" ;
chromosome2 GeneDB CDS_parts 4430190 4431533 . + . mRNA SPBC8E4.05c ; db_xref "SPD:20/20G09" ; systematic_id "SPBC8E4.05c" ; colour "10" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible horizontal transfer; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100902" ; gene "SPBC8E4.05c" ; product "fumarate lyase superfamily" ; note "most similar to bacterial 3-carboxy-cis,cis- muconate cycloisomerase" ;
chromosome2 GeneDB CDS 4430190 4431533 . + . mRNA SPBC8E4.05c ; colour "10" ;
chromosome2 GeneDB 3'-UTR 4432278 4432417 . - . mRNA SPBC8E4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8E4.04" ; systematic_id "SPBC8E4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4432418 4433395 . - . mRNA SPBC8E4.04 ; db_xref "SPD:14/14A09" ; systematic_id "SPBC8E4.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR120W and YDR368W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0019568; arabinose catabolism
GO:0004033; aldo-keto reductase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0042843; D-xylose catabolism" ; gene "SPBC8E4.04" ; product "aldo/keto reductase involved in pentose catabolism (predicted)" ; EC_number "1.1.1.-" ;
chromosome2 GeneDB CDS 4432418 4433395 . - . mRNA SPBC8E4.04 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4433394 4433428 . - . mRNA SPBC8E4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8E4.04" ; systematic_id "SPBC8E4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 3'-UTR 4434256 4434366 . - . mRNA SPBC8E4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8E4.03" ; systematic_id "SPBC8E4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4434367 4435608 . - . mRNA SPBC8E4.03 ; db_xref "SPD:19/19H03" ; systematic_id "SPBC8E4.03" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAPB24D3.03 and SPAC11D3.09; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0019627; urea metabolism
GO:0008783; agmatinase activity
GO:0030145; manganese ion binding" ; gene "SPBC8E4.03" ; product "agmatinase 2 (predicted)" ; EC_number "3.5.3.11" ;
chromosome2 GeneDB CDS 4434367 4435608 . - . mRNA SPBC8E4.03 ; colour "7" ;
chromosome2 GeneDB 5'-UTR 4435607 4435800 . - . mRNA SPBC8E4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8E4.03" ; systematic_id "SPBC8E4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_RNA 4435937 4436680 . + . misc_RNA SPNCRNA.444 ; db_xref "PMID:18488015" ; synonym "SPNG1994" ; systematic_id "SPNCRNA.444" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| longest ORF with methionine is 70 amino acids" ;
chromosome2 GeneDB LTR 4436890 4437243 . - . LTR unknown_3792 ; colour "4" ; note "similar to tf1/tf2 LTR" ;
chromosome2 GeneDB LTR 4437498 4437846 . + . LTR unknown_3793 ; colour "4" ; note "Highly similar to tf2 LTR" ;
chromosome2 GeneDB LTR 4437850 4438205 . + . LTR unknown_3794 ; colour "4" ; note "similar to tf1 LTR" ;
chromosome2 GeneDB misc_RNA 4439928 4440156 . + . misc_RNA SPNCRNA.117 ; db_xref "EMBL:AU006805" ; systematic_id "SPNCRNA.117" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU006805; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU006805; date=20050412" ; gene "SPNCRNA.117" ; product "non-coding RNA (predicted)" ; note "cDNA, clone spc00469: not associated with an orf; mRNA from AU006805" ;
chromosome2 GeneDB CDS_parts 4441340 4441609 . - . mRNA SPBC8E4.12c ; systematic_id "SPBC8E4.12c" ; colour "2" ; gene "ecl3 ||| SPBC8E4.12c" ; obsolete_name "SPNG1995-96" ; Alias "ecl3" ; GO "GO:0005634; nucleus
GO:0001300; chronological cell aging" ; controlled_curation "term=orthologous to S. cerevisiae YGR146C; date=20090410 ||| term=species distribution, conserved in Fungi; date=20090410 ||| term=species distribution, conserved in Fungi only; date=20090410" ; primary_name "ecl3" ; product "extender of the chronological lifespan protein Ecl3" ;
chromosome2 GeneDB CDS 4441340 4441609 . - . mRNA SPBC8E4.12c ; colour "2" ;
chromosome2 GeneDB CDS_parts 4443155 4443544 . + . mRNA SPBC8E4.02c ; db_xref "SPD:02/02H07" ; systematic_id "SPBC8E4.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC8E4.02c" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 4443155 4443544 . + . mRNA SPBC8E4.02c ; colour "8" ;
chromosome2 GeneDB misc_feature 4443704 4445074 . + . misc_feature unknown_3795 ; note "nominal overlap with cosmid SPBC8E4 and p1 clone p4G3" ;
chromosome2 GeneDB 5'-UTR 4444104 4444251 . + . mRNA SPBC8E4.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBC8E4.01c" ; systematic_id "SPBC8E4.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4444252 4445970 . + . mRNA SPBC8E4.01c ; systematic_id "SPBC8E4.01c" ; colour "7" ; gene "SPBP4G3.01 ||| SPBC8E4.01c" ; Alias "SPBP4G3.01" ; db_xref "SPD:45/45F05" ; synonym "SPBP4G3.01" ; GO "GO:0035435; phosphate transmembrane transport
GO:0005887; integral to plasma membrane
GO:0005315; inorganic phosphate transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML123C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824" ; primary_name "SPBP4G3.01" ; product "inorganic phosphate transporter (predicted)" ;
chromosome2 GeneDB CDS 4444252 4445970 . + . mRNA SPBC8E4.01c ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4445971 4446200 . + . mRNA SPBC8E4.01c ; ID "SPBC8E4.01c" ; systematic_id "SPBC8E4.01c" ; note "mRNA from AU009778" ;
chromosome2 GeneDB 5'-UTR 4447515 4447556 . + . mRNA SPBP4G3.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBP4G3.02" ; systematic_id "SPBP4G3.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4447557 4448918 . + . mRNA SPBP4G3.02 ; systematic_id "SPBP4G3.02" ; colour "2" ; gene "pho1 ||| SPBP4G3.02" ; Alias "pho1" ; db_xref "SPD:40/40E01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YAR071W and YHR215W and YDL024C and YBR093C and YBR092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; db_xref=PMID:2381421; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; GO "GO:0005576; extracellular region
GO:0009277; cell wall (sensu Fungi)
GO:0030287; periplasmic space (sensu Fungi)
GO:0003993; acid phosphatase activity
GO:0009897; external side of plasma membrane" ; primary_name "pho1" ; product "acid phosphatase Pho1" ; EC_number "3.1.3.2" ;
chromosome2 GeneDB CDS 4447557 4448918 . + . mRNA SPBP4G3.02 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4448919 4449053 . + . mRNA SPBP4G3.02 ; ID "SPBP4G3.02" ; systematic_id "SPBP4G3.02" ; note "mRNA from AU013961" ;
chromosome2 GeneDB misc_feature 4449054 4453077 . - . misc_feature unknown_3796 ; note "gene-free region" ;
chromosome2 GeneDB misc_RNA 4452172 4452793 . + . misc_RNA SPNCRNA.446 ; db_xref "PMID:18488015" ; synonym "SPNG1998" ; systematic_id "SPNCRNA.446" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB CDS_parts 4453078 4453803 . + . mRNA SPBP4G3.03 ; db_xref "SPD:08/08F06" ; systematic_id "SPBP4G3.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPAC15E1.10; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBP4G3.03" ; product "PI31 proteasome regulator related" ;
chromosome2 GeneDB CDS 4453078 4453803 . + . mRNA SPBP4G3.03 ; colour "10" ;
chromosome2 GeneDB misc_feature 4453804 4457893 . - . misc_feature unknown_3797 ; note "gene-free region" ;
chromosome2 GeneDB misc_feature 4457307 4457893 . + . misc_feature unknown_3798 ; note "nominal overlap with SPBP4G3 S. pombe chromosome 2" ;
chromosome2 GeneDB 5'-UTR 4457742 4458009 . + . mRNA SPBPB2B2.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.01" ; systematic_id "SPBPB2B2.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4458010 4459767 . + . mRNA SPBPB2B2.01 ; db_xref "SPD:49/49B12" ; systematic_id "SPBPB2B2.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPBPB2B2.01" ; product "amino acid permease (predicted)" ;
chromosome2 GeneDB CDS 4458010 4459767 . + . mRNA SPBPB2B2.01 ; colour "7" ;
chromosome2 GeneDB 3'-UTR 4459768 4459777 . + . mRNA SPBPB2B2.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.01" ; systematic_id "SPBPB2B2.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4460559 4461704 . + . mRNA SPBPB2B2.02 ; systematic_id "SPBPB2B2.02" ; colour "10" ; gene "SPBPB2B2.02 ||| mug180" ; db_xref "SPD:50/50D02" ; Alias "mug180" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR263C; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug180" ; product "esterase/lipase (predicted)" ;
chromosome2 GeneDB CDS 4460559 4461704 . + . mRNA SPBPB2B2.02 ; colour "10" ;
chromosome2 GeneDB misc_feature 4462609 4464024 . - . misc_feature unknown_3799 ; note "region of very degraded permease" ;
chromosome2 GeneDB misc_feature 4464941 4465474 . + . misc_feature unknown_3800 ; product "pseudogene region of very degraded transporter" ;
chromosome2 GeneDB misc_RNA 4465475 4466352 . - . misc_RNA SPNCRNA.532 ; db_xref "PMID:18488015" ; synonym "SPNGAF25" ; systematic_id "SPNCRNA.532" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome2 GeneDB 5'-UTR 4466651 4466722 . + . mRNA SPBPB2B2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.05" ; systematic_id "SPBPB2B2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4466723 4467515 . + . mRNA SPBPB2B2.05 ; db_xref "SPD:41/41F06" ; systematic_id "SPBPB2B2.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible horizontal transfer; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100902" ; colour "10" ; gene "SPBPB2B2.05" ; product "peptidase family C26 protein" ;
chromosome2 GeneDB CDS 4466723 4466725 . + . mRNA SPBPB2B2.05 ; colour "10" ;
chromosome2 GeneDB CDS 4466805 4467515 . + . mRNA SPBPB2B2.05 ; colour "10" ;
chromosome2 GeneDB misc_feature 4466726 4466731 . + . misc_feature unknown_3801 ; colour "6" ; note "gtgata, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4466791 4466804 . + . misc_feature unknown_3802 ; colour "6" ; note "ctaataactcacag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4467516 4467590 . + . mRNA SPBPB2B2.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.05" ; systematic_id "SPBPB2B2.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4469200 4471005 . - . mRNA SPBPB2B2.06c ; db_xref "SPD:49/49C08" ; systematic_id "SPBPB2B2.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR202W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBPB2B2.06c" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome2 GeneDB CDS 4469200 4471005 . - . mRNA SPBPB2B2.06c ; colour "10" ;
chromosome2 GeneDB CDS_parts 4474145 4474931 . - . mRNA SPBPB2B2.07c ; systematic_id "SPBPB2B2.07c" ; colour "12" ; gene "SPBPB2B2.07c" ; note "altered coordinates based on Solexa transcript SPNG2000, added exon 4474145..4474403" ; db_xref "SPD:41/41C11" ; GO "GO:0009897; external side of plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101" ; product "S. pombe specific DUF999 protein family 7" ;
chromosome2 GeneDB CDS 4474145 4474403 . - . mRNA SPBPB2B2.07c ; colour "12" ;
chromosome2 GeneDB CDS 4474438 4474931 . - . mRNA SPBPB2B2.07c ; colour "12" ;
chromosome2 GeneDB LTR 4474977 4475138 . + . LTR unknown_3803 ; note "216 (+1) 184 349 Tf2-type LTR" ;
chromosome2 GeneDB CDS_parts 4476012 4476674 . + . mRNA SPBPB2B2.08 ; db_xref "SPD:41/41E01" ; systematic_id "SPBPB2B2.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBPB2B2.08" ; product "conserved fungal protein" ;
chromosome2 GeneDB CDS 4476012 4476674 . + . mRNA SPBPB2B2.08 ; colour "10" ;
chromosome2 GeneDB 3'-UTR 4478919 4479109 . - . mRNA SPBPB2B2.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.09c" ; systematic_id "SPBPB2B2.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4479110 4480162 . - . mRNA SPBPB2B2.09c ; db_xref "SPD:49/49A04" ; systematic_id "SPBPB2B2.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR063C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0008677; 2-dehydropantoate 2-reductase activity
GO:0015940; pantothenate biosynthesis
GO:0005737; cytoplasm" ; gene "SPBPB2B2.09c" ; product "2-dehydropantoate 2-reductase (predicted)" ; EC_number "1.1.1.169" ;
chromosome2 GeneDB CDS 4479110 4480162 . - . mRNA SPBPB2B2.09c ; colour "7" ;
chromosome2 GeneDB LTR 4481108 4481445 . - . LTR unknown_3804 ; note "452 (-1) 11 358 Tf1-type LTR" ;
chromosome2 GeneDB LTR 4481502 4481842 . - . LTR unknown_3805 ; note "1007 (-1) 1 349 Tf2-type LTR" ;
chromosome2 GeneDB LTR 4481838 4482117 . + . LTR unknown_3806 ; note "618 (+1) 44 332 Tf1-type LTR" ;
chromosome2 GeneDB 3'-UTR 4482546 4482568 . - . mRNA SPBPB2B2.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.10c" ; systematic_id "SPBPB2B2.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4482569 4483678 . - . mRNA SPBPB2B2.10c ; systematic_id "SPBPB2B2.10c" ; colour "2" ; gene "SPBPB2B2.10c" ; Alias "gal7" ; db_xref "SPD:50/50C08" ; GO "GO:0008108; UDP-glucose:hexose-1-phosphate uridylyltransferase activity
GO:0033499; galactose catabolic process via UDP- galactose
GO:0005737; cytoplasm
GO:0052574; UDP-galactose biosynthetic process
GO:0042125; protein amino acid galactosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gal7" ; product "galactose-1-phosphate uridylyltransferase Gal7" ; EC_number "2.7.7.10" ;
chromosome2 GeneDB CDS 4482569 4483678 . - . mRNA SPBPB2B2.10c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4483677 4483703 . - . mRNA SPBPB2B2.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.10c" ; systematic_id "SPBPB2B2.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4484059 4485156 . + . mRNA SPBPB2B2.11 ; systematic_id "SPBPB2B2.11" ; colour "7" ; gene "SPBPB2B2.11" ; note "appears to be part of a galactose metabolism cluster" ; db_xref "SPD:50/50C06" ; GO "GO:0042125; protein amino acid galactosylation
GO:0031506; cell wall glycoprotein biosynthetic process
GO:0006012; galactose metabolic process
GO:0006012; galactose metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TGDS ortholog; date=20100625 ||| term=warning, NAS annotations are inferred from genomic location; date=20101012" ; product "nucleotide-sugar 4,6-dehydratase (predicted)" ;
chromosome2 GeneDB CDS 4484059 4485156 . + . mRNA SPBPB2B2.11 ; colour "7" ;
chromosome2 GeneDB CDS_parts 4485277 4487418 . - . mRNA SPBPB2B2.12c ; systematic_id "SPBPB2B2.12c" ; colour "2" ; gene "SPBPB2B2.12c" ; db_xref "SPD:49/49D07" ; Alias "gal10" ; GO "GO:0003978; UDP-glucose 4-epimerase activity
GO:0033499; galactose catabolic process via UDP- galactose
GO:0042125; protein amino acid galactosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, bifunctional enzyme; cv=cat_act; qualifier=predicted; date=20061113 ||| term=orthologous to S. cerevisiae YBR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gal10" ; product "UDP-glucose 4-epimerase/aldose 1-epimerase Gal10" ; EC_number "5.1.3.2 ||| 5.1.3.3" ;
chromosome2 GeneDB CDS 4485277 4487418 . - . mRNA SPBPB2B2.12c ; colour "2" ;
chromosome2 GeneDB 5'-UTR 4487417 4487496 . - . mRNA SPBPB2B2.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.12c" ; systematic_id "SPBPB2B2.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB 5'-UTR 4488324 4488490 . + . mRNA SPBPB2B2.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.13" ; systematic_id "SPBPB2B2.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4488491 4490050 . + . mRNA SPBPB2B2.13 ; systematic_id "SPBPB2B2.13" ; colour "2" ; gene "SPBPB2B2.13" ; Alias "gal1" ; db_xref "SPD:50/50H02" ; GO "GO:0046835; carbohydrate phosphorylation
GO:0004335; galactokinase activity
GO:0033499; galactose catabolic process via UDP- galactose
GO:0006012; galactose metabolism
GO:0006012; galactose metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, galactokinase deficiency with cataracts; date=20060821 ||| term=orthologous to S. cerevisiae YBR020W and YDR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gal1" ; product "galactokinase Gal1" ; EC_number "2.7.1.6" ;
chromosome2 GeneDB CDS 4488491 4490050 . + . mRNA SPBPB2B2.13 ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4490051 4490085 . + . mRNA SPBPB2B2.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.13" ; systematic_id "SPBPB2B2.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB repeat_region 4492130 4509021 . - . repeat_region unknown_3807 ; note "region duplicated in C977, c1348, c750" ;
chromosome2 GeneDB CDS_parts 4492580 4493322 . - . mRNA SPBPB2B2.14c ; systematic_id "SPBPB2B2.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; gene "SPBPB2B2.14c" ; product "S. pombe specific DUF999 protein family 8" ;
chromosome2 GeneDB CDS 4492580 4492854 . - . mRNA SPBPB2B2.14c ; colour "12" ;
chromosome2 GeneDB CDS 4492905 4493322 . - . mRNA SPBPB2B2.14c ; colour "12" ;
chromosome2 GeneDB misc_feature 4492855 4492871 . - . misc_feature unknown_3808 ; colour "6" ; note "ctaataatttaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4492899 4492904 . - . misc_feature unknown_3809 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB CDS_parts 4496373 4496984 . + . mRNA SPBPB2B2.15 ; db_xref "SPD:41/41D08" ; systematic_id "SPBPB2B2.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL258W and YOR387C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBPB2B2.15" ; product "conserved fungal family" ;
chromosome2 GeneDB CDS 4496373 4496984 . + . mRNA SPBPB2B2.15 ; colour "10" ;
chromosome2 GeneDB CDS_parts 4497937 4499394 . - . mRNA SPBPB2B2.16c ; systematic_id "SPBPB2B2.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=similar to S. pombe SPBC1348.05 and SPAPB1A11.01 and SPAC750.02c and SPCC1529.01; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=19700101" ; colour "7" ; GO "GO:0006810; transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; gene "SPBPB2B2.16c" ; product "MFS family membrane transporter (predicted)" ;
chromosome2 GeneDB CDS 4497937 4499394 . - . mRNA SPBPB2B2.16c ; colour "7" ;
chromosome2 GeneDB misc_RNA 4499758 4501251 . + . misc_RNA SPNCRNA.448 ; db_xref "PMID:18488015" ; synonym "SPNG2003" ; systematic_id "SPNCRNA.448" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome2 GeneDB conflict 4500175 4500183 . + . conflict unknown_3810 ; citation "[1]" ; note "variable region: 9 T's in pB2B2: 12 T's in pT2R1" ;
chromosome2 GeneDB LTR 4501568 4501763 . + . LTR unknown_3811 ; note "152 (+1) 65 259 Tf2-type LTR" ;
chromosome2 GeneDB CDS_parts 4501956 4502396 . - . mRNA SPBPB2B2.17c ; db_xref "SPD:41/41B10" ; systematic_id "SPBPB2B2.17c" ; controlled_curation "term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; product "S. pombe specific 5Tm protein family" ;
chromosome2 GeneDB CDS 4501956 4502396 . - . mRNA SPBPB2B2.17c ; colour "12" ;
chromosome2 GeneDB CDS_parts 4502692 4503664 . + . mRNA SPBPB2B2.18 ; db_xref "SPD:50/50E03" ; systematic_id "SPBPB2B2.18" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBPB2B2.18" ; product "sequence orphan" ; note "There is a region which is duplicated in PB2B2 which is represented by the ORF SPBPB2B2.18 although the similarity is not very high...the predicition looks odd. The exon structure is not typical. There is also a region which is duplicated at the DNA level in c750 which is not incorporated into the prediction." ;
chromosome2 GeneDB CDS 4502692 4502725 . + . mRNA SPBPB2B2.18 ; colour "8" ;
chromosome2 GeneDB CDS 4502787 4502857 . + . mRNA SPBPB2B2.18 ; colour "8" ;
chromosome2 GeneDB CDS 4503068 4503286 . + . mRNA SPBPB2B2.18 ; colour "8" ;
chromosome2 GeneDB CDS 4503527 4503664 . + . mRNA SPBPB2B2.18 ; colour "8" ;
chromosome2 GeneDB misc_feature 4502858 4502863 . + . misc_feature unknown_3812 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4503058 4503067 . + . misc_feature unknown_3813 ; colour "6" ; note "ttaataatag, splice branch and acceptor" ;
chromosome2 GeneDB misc_feature 4503287 4503292 . + . misc_feature unknown_3814 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome2 GeneDB misc_feature 4503501 4503526 . + . misc_feature unknown_3815 ; colour "6" ; note "ttaattttgtaaaatatatattatag, splice branch and acceptor" ;
chromosome2 GeneDB 3'-UTR 4503653 4503909 . - . mRNA SPBPB2B2.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.19c" ; systematic_id "SPBPB2B2.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4503910 4504944 . - . mRNA SPBPB2B2.19c ; systematic_id "SPBPB2B2.19c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAC977.01 and SPAC750.05c and SPBC1348.02; date=19700101" ; colour "12" ; gene "SPBPB2B2.19c" ; product "S. pombe specific 5Tm protein family" ;
chromosome2 GeneDB CDS 4503910 4504944 . - . mRNA SPBPB2B2.19c ; colour "12" ;
chromosome2 GeneDB 5'-UTR 4504943 4505257 . - . mRNA SPBPB2B2.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBPB2B2.19c" ; systematic_id "SPBPB2B2.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB misc_feature 4506231 4509021 . + . misc_feature unknown_3816 ; note "nominal overalap with SPBPB2B2 S. pombe chromosome 2" ;
chromosome2 GeneDB repeat_region 4506231 4512923 . + . repeat_region unknown_3817 ; note "duplicated in c1348" ;
chromosome2 GeneDB 3'-UTR 4506517 4506605 . - . mRNA SPBCPT2R1.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBCPT2R1.01c" ; systematic_id "SPBCPT2R1.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4506606 4507473 . - . mRNA SPBCPT2R1.01c ; systematic_id "SPBCPT2R1.01c" ; colour "12" ; gene "SPBPB2B2.20c ||| SPBCPT2R1.01c" ; Alias "SPBPB2B2.20c" ; synonym "SPBPB2B2.20c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; GO "GO:0009897; external side of plasma membrane" ; primary_name "SPBPB2B2.20c" ; product "S. pombe specific DUF999 protein family 9" ;
chromosome2 GeneDB CDS 4506606 4506925 . - . mRNA SPBCPT2R1.01c ; colour "12" ;
chromosome2 GeneDB CDS 4506984 4507473 . - . mRNA SPBCPT2R1.01c ; colour "12" ;
chromosome2 GeneDB misc_feature 4506926 4506942 . - . misc_feature unknown_3818 ; colour "6" ; note "ctaataatttaaaatag, splice branch and acceptor" ;
chromosome2 GeneDB intron 4506926 4506983 . - . intron SPBCPT2R1.01c ; systematic_id "SPBCPT2R1.01c" ;
chromosome2 GeneDB misc_feature 4506978 4506983 . - . misc_feature unknown_3819 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome2 GeneDB 5'-UTR 4507472 4507540 . - . mRNA SPBCPT2R1.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBCPT2R1.01c" ; systematic_id "SPBCPT2R1.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 4507733 4508064 . - . LTR unknown_3820 ; note "568 (-1) 8 345 Tf2-type LTR" ;
chromosome2 GeneDB CDS_parts 4508450 4508809 . + . mRNA SPBCPT2R1.02 ; db_xref "SPD:52/52E10" ; systematic_id "SPBCPT2R1.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBCPT2R1.02" ; product "sequence orphan" ;
chromosome2 GeneDB CDS 4508450 4508809 . + . mRNA SPBCPT2R1.02 ; colour "8" ;
chromosome2 GeneDB CDS_parts 4512231 4512620 . + . mRNA SPBCPT2R1.03 ; db_xref "SPD:52/52C05" ; systematic_id "SPBCPT2R1.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPBCPT2R1.03" ; product "hypothetical protein" ;
chromosome2 GeneDB CDS 4512231 4512620 . + . mRNA SPBCPT2R1.03 ; colour "12" ;
chromosome2 GeneDB 3'-UTR 4513614 4513700 . - . mRNA SPBCPT2R1.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBCPT2R1.04c" ; systematic_id "SPBCPT2R1.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB CDS_parts 4513701 4514601 . - . mRNA SPBCPT2R1.04c ; db_xref "SPD:52/52C09" ; systematic_id "SPBCPT2R1.04c" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; gene "SPBCPT2R1.04c" ; product "S. pombe specific DUF999 protein family 10" ;
chromosome2 GeneDB CDS 4513701 4514053 . - . mRNA SPBCPT2R1.04c ; colour "12" ;
chromosome2 GeneDB CDS 4514112 4514601 . - . mRNA SPBCPT2R1.04c ; colour "12" ;
chromosome2 GeneDB intron 4514054 4514111 . - . intron SPBCPT2R1.04c ; systematic_id "SPBCPT2R1.04c" ;
chromosome2 GeneDB repeat_region 4514075 4515516 . + . repeat_region unknown_3821 ; note "duplicated in c212" ;
chromosome2 GeneDB 5'-UTR 4514600 4514667 . - . mRNA SPBCPT2R1.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPBCPT2R1.04c" ; systematic_id "SPBCPT2R1.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome2 GeneDB LTR 4514859 4515181 . - . LTR unknown_3822 ; note "689 (-1) 24 345 Tf2-type LTR" ;
chromosome2 GeneDB CDS_parts 4515203 4515379 . - . mRNA SPBCPT2R1.05c ; systematic_id "SPBCPT2R1.05c" ; pseudo "_no_value" ; colour "13" ; gene "SPBCPT2R1.05c" ; product "pseudogene" ; note "region of homology to SPAC212.04 " ;
chromosome2 GeneDB CDS 4515203 4515379 . - . mRNA SPBCPT2R1.05c ; colour "13" ;
chromosome2 GeneDB misc_feature 4517649 4519024 . - . misc_feature unknown_3823 ; note "region of degraded pseudogene" ;
chromosome2 GeneDB CDS_parts 4519772 4520391 . - . mRNA SPBCPT2R1.06c ; systematic_id "SPBCPT2R1.06c" ; pseudo "_no_value" ; controlled_curation "term=warning, frameshifted; cv=warning; date=19700101" ; colour "13" ; gene "SPBCPT2R1.06c" ; product "pseudogene" ;
chromosome2 GeneDB CDS 4519772 4520108 . - . mRNA SPBCPT2R1.06c ; colour "13" ;
chromosome2 GeneDB CDS 4520111 4520391 . - . mRNA SPBCPT2R1.06c ; colour "13" ;
chromosome2 GeneDB CDS_parts 4523274 4524970 . - . mRNA SPBCPT2R1.07c ; systematic_id "SPBCPT2R1.07c" ; pseudo "_no_value" ; controlled_curation "term=warning, frameshifted; cv=warning; date=19700101" ; colour "13" ; gene "SPBCPT2R1.07c" ; product "pseudogene malic enzyme (predicted)" ;
chromosome2 GeneDB CDS 4523274 4524970 . - . mRNA SPBCPT2R1.07c ; colour "13" ;
chromosome2 GeneDB 5'-UTR 4525283 4526884 . + . mRNA SPBCPT2R1.08c ; ID "SPBCPT2R1.08c" ; db_xref "EMBL:BK005597" ; systematic_id "SPBCPT2R1.08c" ;
chromosome2 GeneDB CDS_parts 4526225 4526884 . + . mRNA SPBCPT2R1.10 ; systematic_id "SPBCPT2R1.10" ; pseudo "_no_value" ; colour "13" ; gene "SPBCPT2R1.10" ; product "pseudogene" ; note "this part of the tlh2 open reading frame contains a truncated version of a malate transporter fused to the tlh2 gene, it is not known whether these residues are included in tlh2 translation" ;
chromosome2 GeneDB CDS 4526225 4526884 . + . mRNA SPBCPT2R1.10 ; colour "13" ;
chromosome2 GeneDB CDS_parts 4526885 4532644 . + . mRNA SPBCPT2R1.08c ; systematic_id "SPBCPT2R1.08c" ; colour "2" ; gene "SPBCPT2R1.08c ||| tlh2" ; Alias "tlh2" ; db_xref "SPD:52/52C12" ; GO "GO:0043140; ATP-dependent 3' to 5' DNA helicase activity
GO:0000722; telomere maintenance via recombination
GO:0000781; chromosome, telomeric region
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, present at telomere ends; db_xref=PMID:15591066; cv=genome_org; date=20060327 ||| term=dh repeats; db_xref=PMID:15591066; date=20060327 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC212.11; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, transcriptionally repressed by Chp1; cv=gene_ex; db_xref=PMID:16407326; date=20060327 ||| term=gene expression, transcriptionally repressed by Rik1; cv=gene_ex; db_xref=PMID:16407326; date=20060327 ||| term=gene expression, transcriptionally repressed by Taz1; cv=gene_ex; db_xref=PMID:16407326; date=20060327" ; primary_name "tlh2" ; product "RecQ type DNA helicase Tlh1" ;
chromosome2 GeneDB CDS 4526885 4532644 . + . mRNA SPBCPT2R1.08c ; colour "2" ;
chromosome2 GeneDB 3'-UTR 4532645 4532885 . + . mRNA SPBCPT2R1.08c ; ID "SPBCPT2R1.08c" ; db_xref "EMBL:BK005597" ; systematic_id "SPBCPT2R1.08c" ;
chromosome2 GeneDB repeat_region 4535114 4535276 . + . repeat_region unknown_3824 ; note "dupliated region in c212" ;
chromosome2 GeneDB repeat_region 4535426 4535519 . + . repeat_region unknown_3825 ; note "duplicated region in c212" ;
chromosome2 GeneDB repeat_region 4535640 4539804 . + . repeat_region unknown_3826 ; note "telomeric repeats" ;
chromosome2 GeneDB RealContig 1 4539804 . . . RealContig chromosome2
chromosome2 GeneDB 5'-UTR 735384 735415 . + . mRNA SPBC119.10 ; systematic_id "SPBC119.10" ;
chromosome2 GeneDB 5'-UTR 1176131 1176241 . - . mRNA SPBC409.20c ; systematic_id "SPBC409.20c" ;
chromosome2 GeneDB 5'-UTR 1282753 1282753 . + . mRNA SPBC3D6.07 ; systematic_id "SPBC3D6.07" ;
chromosome2 GeneDB 5'-UTR 1891791 1891820 . - . mRNA SPBC3H7.01 ; systematic_id "SPBC3H7.01" ;
chromosome2 GeneDB 5'-UTR 2325234 2325255 . + . mRNA SPBC24C6.04 ; systematic_id "SPBC24C6.04" ;
chromosome2 GeneDB 5'-UTR 2565567 2565603 . - . mRNA SPBC29A10.11c ; systematic_id "SPBC29A10.11c" ;
chromosome2 GeneDB 5'-UTR 4073279 4073312 . - . mRNA SPBC1347.06c ; systematic_id "SPBC1347.06c" ;
chromosome2 GeneDB mRNA 1035538 1036864 . + . mRNA SPBC337.03 ; db_xref "SPD:23/23A12" ; systematic_id "SPBC337.03" ; colour "7" ; GO "GO:0030846; transcription termination from Pol II promoter, RNA polymerase(A) coupled" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR289C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC337.03" ; product "RNA polymerase II transcription termination factor (predicted)" ;
chromosome2 GeneDB mRNA 4526225 4526884 . + . mRNA SPBCPT2R1.10 ; systematic_id "SPBCPT2R1.10" ; pseudo "_no_value" ; colour "13" ; gene "SPBCPT2R1.10" ; product "pseudogene" ; note "this part of the tlh2 open reading frame contains a truncated version of a malate transporter fused to the tlh2 gene, it is not known whether these residues are included in tlh2 translation" ;
chromosome2 GeneDB mRNA 4261944 4264033 . - . mRNA SPBC16A3.18 ; systematic_id "SPBC16A3.18" ; colour "2" ; db_xref "SPD:23/23G04" ; Alias "cip1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16407405; date=19700101 ||| term=orthologous to S. cerevisiae YBL051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16407405; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:16407405; date=20090213 ||| term=name description, Csx1- interacting protein 1; cv=name_description; date=20091018" ; GO "GO:0005737; cytoplasm
GO:0003723; RNA binding
GO:0010610; regulation of mRNA stability involved in response to stress
GO:0034599; cellular response to oxidative stress" ; primary_name "cip1" ; product "RNA-binding protein Cip1" ;
chromosome2 GeneDB mRNA 1648230 1648840 . + . mRNA SPBC21B10.13c ; systematic_id "SPBC21B10.13c" ; colour "2" ; db_xref "SPD:06/06G05" ; Alias "yox1" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043565; sequence-specific DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0016566; specific trasncriptional repressor activity
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0010553; negative regulation of gene specific transcription from RNA polymerase II promoter
GO:0071930; negative regulation of transcription involved in G1/S phase of mitotic cell cycle
GO:0030907; MBF transcription complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth normal; cv=phenotype; qualifier=deletion; db_xref=PMID:19714215; date=20100104 ||| term=phenotype, septation defects; qualifier=septation_index_increased|deletion; cv=phenotype; db_xref=PMID:19714215; date=20100104 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; qualifier=deletion; db_xref=PMID:19714215; date=20100104 ||| term=phenotype, expression of MBF target genes increased; cv=phenotype; qualifier=deletion; db_xref=PMID:19714215; date=20100104 ||| term=phenotype, periodic cell-cycle expression, abolished; cv=phenotype; qualifier=deletion; db_xref=PMID:19714215; date=20100104 ||| term=orthologous to S. cerevisiae YML027W and YDR451C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, transcriptionally induced by MBF complex; cv=gene_ex; db_xref=PMID:19714215; date=20100104 ||| term=gene expression, transcriptionally regulates MBF target genes; cv=gene_ex; db_xref=PMID:19714215; date=20100104 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19714215; date=20100104 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; db_xref=PMID:19714215; date=20100122 ||| term=target of MBF; db_xref=PMID:19714215; date=20100104" ; primary_name "yox1" ; product "MBF complex negative regulatory component Yox1" ;
chromosome2 GeneDB mRNA 981210 981925 . + . mRNA SPBP35G2.09 ; systematic_id "SPBP35G2.09" ; colour "2" ; gene "usp103 ||| yhc1 ||| SPBP35G2.09" ; Alias "usp103" ; db_xref "SPD:07/07E11" ; synonym "yhc1" ; GO "GO:0003729; mRNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000243; commitment complex
GO:0005685; snRNP U1
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20070201 ||| term=zf-C2H2 type; date=20070201 ||| term=orthologous to S. cerevisiae YLR298C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "usp103" ; product "U1 snRNP-associated protein Usp103 (predicted)" ;
chromosome2 GeneDB mRNA 1326119 1328650 . - . mRNA SPBC27B12.04c ; db_xref "SPD:33/33H01" ; systematic_id "SPBC27B12.04c" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL127W; date=19700101 ||| term=human FAM40A and FAM40B ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0022402; cell cycle process
GO:0007165; signal transduction" ; gene "SPBC27B12.04c" ; product "conserved eukaryotic protein implicated in cell cycle regulation" ;
chromosome2 GeneDB mRNA 2581957 2583016 . + . mRNA SPBC2G5.03 ; systematic_id "SPBC2G5.03" ; colour "2" ; gene "SPBC2G5.03 ||| ctu1" ; Alias "ctu1" ; db_xref "SPD:14/14H09" ; GO "GO:0002144; cytosolic tRNA thiouridylase complex
GO:0005829; cytosol
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0008360; regulation of cell shape
GO:0006450; regulation of translational fidelity
GO:0002143; tRNA wobble uridine thiolation
GO:0002143; tRNA wobble uridine thiolation
GO:0032447; protein urmylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL211W; date=19700101 ||| term=phenotype, genome stability defects; qualifier=required; db_xref=PMID:18391219; cv=phenotype; date=20080411 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18391219; date=20080411 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ctu1" ; product "cytosolic thiouridylase subunit Ctu1" ;
chromosome2 GeneDB mRNA 297726 298946 . - . mRNA SPBC1773.08c ; systematic_id "SPBC1773.08c" ; colour "7" ; gene "SPBC1773.08c" ; Alias "omh4" ; db_xref "SPD:18/18F07" ; GO "GO:0000026; alpha-1,2-mannosyltransferase activity
GO:0000032; cell wall mannoprotein biosynthesis
GO:0035268; protein amino acid mannosylation
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL029C and YIL085C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100525" ; primary_name "omh4" ; product "alpha-1,2-mannosyltransferase Omh4 (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB mRNA 3711604 3713649 . - . mRNA SPBC19F5.05c ; systematic_id "SPBC19F5.05c" ; colour "7" ; gene "SPBC19F5.05c ||| SPBC25D12.01c ||| ppp1" ; Alias "ppp1" ; db_xref "SPD:27/27E05" ; synonym "SPBC25D12.01c" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR103W; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ppp1" ; product "pescadillo-family BRCT domain protein (predicted)" ; reserved_name "ppp1" ;
chromosome2 GeneDB mRNA 2923910 2925277 . + . mRNA SPBC1703.05 ; db_xref "SPD:18/18D07" ; systematic_id "SPBC1703.05" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0030490; processing of 20S pre-rRNA
GO:0004672; protein kinase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL207W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC1703.05" ; product "protein kinase, RIO family (predicted)" ;
chromosome2 GeneDB mRNA 3640990 3642424 . - . mRNA SPBP8B7.05c ; db_xref "SPD:08/08H05" ; systematic_id "SPBP8B7.05c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL036W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004089; carbonate dehydratase activity
GO:0033554; cellular response to stress
GO:0006730; one-carbon metabolic process" ; gene "SPBP8B7.05c" ; product "carbonic anhydrase (predicted)" ; EC_number "4.2.1.1" ;
chromosome2 GeneDB mRNA 4071555 4073235 . - . mRNA SPBC1347.06c ; systematic_id "SPBC1347.06c" ; colour "2" ; gene "cki1 ||| SPBC1347.06c" ; Alias "cki1" ; db_xref "SPD:44/44F02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CK2 subfamily; db_xref=PMID:8125945; date=19700101 ||| term=orthologous to S. cerevisiae YNL154C and YHR135C and YER123W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Its3; db_xref=PMID:9873063; date=20091231" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0030100; regulation of endocytosis
GO:0090215; regulation of 1-phosphatidylinositol-4- phosphate 5-kinase activity" ; primary_name "cki1" ; product "serine/threonine protein kinase Cki1" ; EC_number "2.7.1.-" ;
chromosome2 GeneDB mRNA 3178560 3181338 . + . mRNA SPBC776.04 ; systematic_id "SPBC776.04" ; colour "2" ; gene "sec2302 ||| sec23-b ||| SPBC776.04" ; Alias "sec2302" ; db_xref "SPD:29/29D04" ; synonym "sec23-b" ; GO "GO:0005096; GTPase activator activity
GO:0008270; zinc ion binding
GO:0006886; intracellular protein transport
GO:0030127; COPII vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030433; ER-associated protein catabolism" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR181C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec2302" ; product "COPII cargo receptor subunit Sec23b (predicted)" ;
chromosome2 GeneDB mRNA 4009482 4010868 . - . mRNA SPBC3B9.14c ; systematic_id "SPBC3B9.14c" ; colour "7" ; gene "SPBC3B9.14c ||| mrpl3" ; Alias "mrpl3" ; db_xref "SPD:22/22D06" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit
GO:0003725; double-stranded RNA binding
GO:0006396; RNA processing
GO:0004525; ribonuclease III activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl3" ; product "mitochondrial ribosomal protein subunit L3 (predicted)" ;
chromosome2 GeneDB mRNA 1982635 1984283 . + . mRNA SPBC1A4.04 ; db_xref "SPD:09/09B11" ; systematic_id "SPBC1A4.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC1A4.04" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1297904 1301258 . - . mRNA SPBC30B4.01c ; systematic_id "SPBC30B4.01c" ; colour "2" ; gene "wsc1 ||| SPBC3D6.14c ||| SPBC30B4.01c" ; note "52 consecutive serines" ; Alias "wsc1" ; db_xref "SPD:15/15F09" ; synonym "SPBC3D6.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=; date=19700101 ||| term=orthologous to S. cerevisiae YOR008C and YNL283C and YOL105C and YHL028W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; qualifier=inferred from context; date=19700101 ||| term=modification, mannosylated; cv=pt_mod; qualifier=O-linked; db_xref=PMID:15948957; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=warning, gene structure updated; cv=warning; date=20031112" ; GO "GO:0004888; transmembrane receptor activity
GO:0023034; intracellular signaling cascade
GO:0033554; cellular response to stress
GO:0031505; cell wall organization and biogenesis
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0005886; plasma membrane
GO:0030246; carbohydrate binding
GO:0007166; cell surface receptor linked signal transduction" ; primary_name "wsc1" ; product "transmembrane receptor Wsc1 (predicted)" ;
chromosome2 GeneDB mRNA 1224587 1225689 . + . mRNA SPBC725.10 ; db_xref "SPD:04/04F04" ; systematic_id "SPBC725.10" ; colour "7" ; GO "GO:0015886; haem transport
GO:0006839; mitochondrial transport
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC725.10" ; product "tspO homolog/ peripheral benzodiazepine receptor homolog, involved in the transport cytoplas/mitochondrial of haem (predicted)" ;
chromosome2 GeneDB mRNA 3734492 3736981 . + . mRNA SPBC13G1.05 ; db_xref "SPD:27/27H12" ; systematic_id "SPBC13G1.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YER140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0034975; protein folding in the endoplasmic reticulum" ; gene "SPBC13G1.05" ; product "ER protein folding protein (predicted)" ;
chromosome2 GeneDB mRNA 1174535 1175884 . - . mRNA SPBC409.20c ; systematic_id "SPBC409.20c" ; colour "2" ; gene "psh3 ||| SPBC409.20c" ; Alias "psh3" ; db_xref "SPD:15/15G01" ; GO "GO:0005783; endoplasmic reticulum
GO:0051082; unfolded protein binding
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDL212W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "psh3" ; product "ER chaperone SHR3 homologue Psh3" ;
chromosome2 GeneDB mRNA 4373541 4375131 . - . mRNA SPBC1539.07c ; db_xref "SPD:21/21F09" ; systematic_id "SPBC1539.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0033554; cellular response to stress
GO:0046294; formaldehyde catabolism
GO:0051903; S-(hydroxymethyl)glutathione dehydrogenase activity" ; gene "SPBC1539.07c" ; product "glutathione-dependent formaldehyde dehydrogenase (predicted)" ; EC_number "1.1.1.284" ;
chromosome2 GeneDB mRNA 1931810 1934401 . - . mRNA SPBC16E9.10c ; db_xref "SPD:29/29A11" ; systematic_id "SPBC16E9.10c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0000055; ribosomal large subunit export from nucleus
GO:0016887; ATPase activity
GO:0005634; nucleus
GO:0005524; ATP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YLL034C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC16E9.10c" ; product "AAA family ATPase Rix7 (predicted)" ;
chromosome2 GeneDB mRNA 4219755 4220530 . + . mRNA SPBC16G5.04 ; systematic_id "SPBC16G5.04" ; colour "7" ; gene "SPBC16G5.04 ||| mrpl23" ; Alias "mrpl23" ; db_xref "SPD:05/05A12" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR150W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl23" ; product "mitochondrial ribosomal protein subunit L13 (predicted)" ;
chromosome2 GeneDB mRNA 359903 360343 . + . mRNA SPBC1271.06c ; systematic_id "SPBC1271.06c" ; colour "8" ; gene "SPBC1271.06c ||| mug96" ; db_xref "SPD:03/03G10" ; Alias "mug96" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug96" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1083570 1085326 . - . mRNA SPBC1734.12c ; systematic_id "SPBC1734.12c" ; colour "7" ; gene "alg12 ||| SPBC1734.12c" ; Alias "alg12" ; db_xref "SPD:35/35G08" ; GO "GO:0005783; endoplasmic reticulum
GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0006486; protein amino acid glycosylation
GO:0000009; alpha-1,6-mannosyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNR030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "alg12" ; product "alpha-1,6-mannosyltransferase for the addition of the mannose to dolichol-linked Man7GlcNAc2, Alg12 (predicted)" ;
chromosome2 GeneDB mRNA 1024057 1027962 . - . mRNA SPBC146.13c ; systematic_id "SPBC146.13c" ; colour "2" ; gene "myo1 ||| SPBC146.13c" ; Alias "myo1" ; db_xref "SPD:39/39C03" ; GO "GO:0030479; actin cortical patch
GO:0051286; cell tip
GO:0005826; contractile ring
GO:0005628; forespore membrane
; lipid raft
; medial ring
GO:0045160; myosin I complex
GO:0030427; site of polarized growth
GO:0000146; microfilament motor activity
GO:0005543; phospholipid binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000147; actin cortical patch assembly
GO:0051666; actin cortical patch localization
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0007015; actin filament organization
GO:0045010; actin nucleation
GO:0045010; actin nucleation
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0006897; endocytosis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0031580; lipid raft distribution
GO:0051127; positive regulation of actin nucleation
GO:0030100; regulation of endocytosis
GO:0030476; spore wall assembly (sensu Fungi)
GO:0003779; actin binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=IQ domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11076964; date=19700101 ||| term=orthologous to S. cerevisiae YMR109W and YKL129C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "myo1" ; product "myosin type I" ;
chromosome2 GeneDB mRNA 1436278 1437274 . + . mRNA SPBP22H7.03 ; obsolete_name "pi028 ||| SPACTOKYO_453.06c ||| SPACTOKYO_453.07" ; db_xref "SPD:41/41D02" ; systematic_id "SPBP22H7.03" ; colour "10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=20090303 ||| term=species distribution, conserved in Fungi; date=20100824" ; gene "SPBP22H7.03" ; product "beta-glucan synthesis-associated protein- related" ;
chromosome2 GeneDB mRNA 864756 865994 . - . mRNA SPBC36.12c ; systematic_id "SPBC36.12c" ; colour "2" ; gene "git7 ||| SPBC36.12c" ; Alias "git7" ; obsolete_name "SPBC713.01c" ; db_xref "SPD:22/22A07" ; GO "GO:0045014; negative regulation of transcription by glucose
GO:0007190; adenylate cyclase activation
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0031505; cell wall organization and biogenesis
GO:0007188; G-protein signalling coupled to cAMP nucleotide second messenger" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12456004; date=19700101 ||| term=phenotype, sensitive to benomyl; cv=phenotype; db_xref=PMID:12456004; date=19700101 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505 ||| term=phenotype, cell morphology, elongated and multiseptate; allele=it7-235; db_xref=PMID:12456004; date=20100727 ||| term=CS domain; date=19700101 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR057W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505" ; primary_name "git7" ; product "SGT1-like protein Git7" ;
chromosome2 GeneDB mRNA 3030371 3031431 . - . mRNA SPBC15D4.11c ; db_xref "SPD:13/13H01" ; systematic_id "SPBC15D4.11c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20091022 ||| term=species distribution, conserved in Metazoa; date=20091022 ||| term=species distribution, conserved in Fungi; date=20091022 ||| term=species distribution, conserved in Vertebrates; date=20091022 ||| term=species distribution, conserved in Eukaryotes only; date=20091022 ||| term=orthologous to S. cerevisiae YIL070C; date=20091022" ; gene "SPBC15D4.11c" ; product "mitochondrial Mam33 family protein (predicted)" ; note "low similarity to mitochondrial glycoprotein mam33 family" ;
chromosome2 GeneDB mRNA 3124156 3126701 . - . mRNA SPBC4C3.06 ; systematic_id "SPBC4C3.06" ; colour "7" ; gene "SPBC4C3.06" ; db_xref "SPD:29/29A07" ; Alias "syp1" ; GO "GO:0030036; cytoskeleton organization
GO:0030427; site of polarized growth" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR030C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "syp1" ; product "cytoskeletal protein Syp1 (predicted)" ;
chromosome2 GeneDB mRNA 1517668 1520054 . + . mRNA SPBC83.05 ; db_xref "SPD:28/28C10" ; systematic_id "SPBC83.05" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YMR302C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC83.05" ; product "mitochondrial RNA-binding protein (predicted)" ;
chromosome2 GeneDB mRNA 4322829 4332028 . - . mRNA SPBC16C6.02c ; systematic_id "SPBC16C6.02c" ; colour "7" ; gene "vps1302 ||| vps13b ||| SPBC16C6.02c" ; Alias "vps1302" ; db_xref "SPD:34/34D07" ; synonym "vps13b" ; GO "GO:0005768; endosome
GO:0006886; intracellular protein transport
GO:0045324; late endosome to vacuole transport
GO:0045053; protein retention in Golgi" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, chorea- acanthocytosis; date=19700101 ||| term=UBA domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YLL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps1302" ; product "chorein homolog (predicted)" ;
chromosome2 GeneDB mRNA 3422532 3423194 . + . mRNA SPBC4B4.06 ; systematic_id "SPBC4B4.06" ; colour "2" ; gene "vps25 ||| SPBC4B4.06" ; Alias "vps25" ; db_xref "SPD:42/42E06" ; GO "GO:0000814; ESCRT II complex
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR102C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps25" ; product "ESCRT II complex subunit Vps25" ;
chromosome2 GeneDB mRNA 1448002 1448545 . + . mRNA SPBP22H7.08 ; systematic_id "SPBP22H7.08" ; colour "7" ; gene "rps1002 ||| rps10-2 ||| rps10B ||| SPBP22H7.08" ; Alias "rps1002" ; obsolete_name "pi023 ||| SPACTOKYO_453.11" ; db_xref "SPD:41/41C07" ; synonym "rps10-2 ||| rps10B" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR293W and YMR230W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0000054; ribosome export from nucleus" ; primary_name "rps1002" ; product "40S ribosomal protein S10 (predicted)" ;
chromosome2 GeneDB mRNA 3789105 3798732 . - . mRNA SPBC21C3.01c ; systematic_id "SPBC21C3.01c" ; colour "7" ; gene "vps13a ||| SPBC31F10.18c ||| SPBC21C3.01c ||| vps1301" ; Alias "vps13a" ; db_xref "SPD:34/34D05" ; synonym "vps1301 ||| SPBC31F10.18c" ; GO "GO:0045324; late endosome to vacuole transport
GO:0045053; protein retention in Golgi
GO:0005768; endosome
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, chorea- acanthocytosis; date=19700101 ||| term=orthologous to S. cerevisiae YLL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps13a" ; product "chorein homolog (predicted)" ;
chromosome2 GeneDB mRNA 1831105 1833130 . + . mRNA SPBC9B6.10 ; systematic_id "SPBC9B6.10" ; colour "2" ; gene "cdc37 ||| SPBC9B6.10" ; Alias "cdc37" ; db_xref "SPD:40/40G03" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0031072; heat shock protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0006457; protein folding
GO:0007346; regulation of mitotic cell cycle
GO:0070304; positive regulation of stress- activated protein kinase signaling pathway
GO:0061077; chaperone-mediated protein folding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14652737; date=19700101 ||| term=phenotype, cut; db_xref=PMID:14652737; date=20100630 ||| term=orthologous to S. cerevisiae YDR168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=misc functional group, chaperone; cv=m_f_g; date=20100126" ; primary_name "cdc37" ; product "Hsp90 co-chaperone Cdc37" ;
chromosome2 GeneDB mRNA 1316220 1318472 . - . mRNA SPBC30B4.06c ; db_xref "SPD:37/37B09" ; systematic_id "SPBC30B4.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL236C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0006412; translation
GO:0002098; tRNA wobble uridine modification" ; product "mitochondrial GIDA family tRNA uridine 5- carboxymethylaminomethyl modification enzyme (predicted)" ;
chromosome2 GeneDB mRNA 4305886 4307866 . + . mRNA SPBC543.04 ; db_xref "SPD:33/33E02" ; systematic_id "SPBC543.04" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human NPRL3 ortholog; date=20100720" ; GO "GO:0032006; regulation of TOR signaling pathway
GO:0034198; cellular response to amino acid starvation" ; gene "SPBC543.04" ; product "Npr2/3 complex subunit Npr3 (predicted)" ;
chromosome2 GeneDB mRNA 4307975 4309846 . - . mRNA SPBC543.05c ; db_xref "SPD:39/39F01" ; systematic_id "SPBC543.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL275W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0046715; boron transmembrane transporter activity
GO:0035445; boron transmembrane transport" ; product "HC03 family inorganic anion exchanger (predicted)" ;
chromosome2 GeneDB mRNA 3037917 3040813 . + . mRNA SPBC13E7.01 ; systematic_id "SPBC13E7.01" ; colour "2" ; gene "cwf22 ||| SPBC15D4.16 ||| SPBC13E7.01" ; Alias "cwf22" ; db_xref "SPD:29/29B01" ; synonym "SPBC15D4.16" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YGR278W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=warning, frameshifted; residue=base 2345; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cwf22" ; product "splicing factor Cwf22" ;
chromosome2 GeneDB mRNA 3413129 3415218 . - . mRNA SPBC4B4.02c ; systematic_id "SPBC4B4.02c" ; colour "7" ; gene "SPBC4B4.02c ||| nca2" ; Alias "nca2" ; db_xref "SPD:35/35F05" ; GO "GO:0005741; mitochondrial outer membrane
GO:0016071; mRNA metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPR155C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "nca2" ; product "mitochondrial protein Nca2 (predicted)" ;
chromosome2 GeneDB mRNA 3475561 3478137 . + . mRNA SPBC1718.04 ; db_xref "SPD:46/46E05" ; systematic_id "SPBC1718.04" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBL011W and YKR067W; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, predominantly uniformly single copy (one to one); date=19700101" ; GO "GO:0004366; glycerol-3-phosphate O-acyltransferase activity
GO:0008654; phospholipid biosynthesis
GO:0005783; endoplasmic reticulum" ; gene "SPBC1718.04" ; product "glycerol-3-phosphate O-acyltransferase (predicted)" ; EC_number "2.3.1.15" ;
chromosome2 GeneDB mRNA 1285965 1287121 . + . mRNA SPBC3D6.09 ; systematic_id "SPBC3D6.09" ; colour "2" ; gene "dpb4 ||| SPBC3D6.09" ; Alias "dpb4" ; db_xref "SPD:10/10B08" ; GO "GO:0005515; protein binding
GO:0006270; DNA replication initiation
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0003887; DNA-directed DNA polymerase activity
GO:0008622; epsilon DNA polymerase complex
GO:0000790; nuclear chromatin
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; db_xref=PMID:15388803; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15388803; date=19700101 ||| term=orthologous to S. cerevisiae YDR121W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human POLE3 ortholog; date=20091020" ; primary_name "dpb4" ; product "DNA polymerase epsilon subunit Dpb4" ;
chromosome2 GeneDB mRNA 4508450 4508809 . + . mRNA SPBCPT2R1.02 ; db_xref "SPD:52/52E10" ; systematic_id "SPBCPT2R1.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBCPT2R1.02" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 535383 536041 . + . mRNA SPBC649.02 ; systematic_id "SPBC649.02" ; colour "7" ; gene "rps1902 ||| rps19-2 ||| rps19 ||| SPBC649.02" ; Alias "rps1902" ; db_xref "SPD:31/31F07" ; synonym "rps19-2 ||| rps19" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL121C and YNL302C; date=19700101 ||| term=disease associated, Diamond Blackfan Anemia; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1902" ; product "40S ribosomal protein S19 (predicted)" ;
chromosome2 GeneDB mRNA 2761210 2763799 . - . mRNA SPBC336.12c ; systematic_id "SPBC336.12c" ; colour "2" ; gene "cdc10 ||| SPBC336.12c" ; Alias "cdc10" ; db_xref "SPD:33/33G05" ; GO "GO:0030907; MBF transcription complex
GO:0005515; protein binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000083; G1/S-specific transcription in mitotic cell cycle
GO:0032569; gene-specific tanscription from RNA polymerase II promoter
GO:0007090; regulation of S phase of mitotic cell cycle
GO:0051037; regulation of transcription, meiotic
GO:0045896; regulation of transcription, mitotic" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:6943408; date=20100705 ||| term=ankyrin repeat protein; date=19700101 ||| term=APSES domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR182W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; date=20100122" ; primary_name "cdc10" ; product "MBF transcription factor complex subunit Cdc10" ;
chromosome2 GeneDB mRNA 877504 879828 . + . mRNA SPBC713.06 ; systematic_id "SPBC713.06" ; colour "7" ; gene "SPBC713.06 ||| adl1 ||| lig3" ; Alias "adl1" ; db_xref "SPD:49/49E03" ; synonym "lig3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL164C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Another DNA Ligase; cv=name_description; date=20100126" ; GO "GO:0005634; nucleus
GO:0071897; DNA biosynthetic process
GO:0003910; DNA ligase (ATP) activity" ; primary_name "adl1" ; product "DNA ligase (predicted)" ; reserved_name "adl1" ;
chromosome2 GeneDB mRNA 509502 510984 . + . mRNA SPBC1685.06 ; systematic_id "SPBC1685.06" ; colour "2" ; gene "cid11 ||| SPBC1685.06" ; Alias "cid11" ; db_xref "SPD:23/23H08" ; GO "GO:0004652; polynucleotide adenylyltransferase activity" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to caffeine; qualifier=deletion; cv=phenotype; date=20060220 ||| term=phenotype, sensitive to HU; qualifier=deletion; cv=phenotype; date=20060220 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; cv=phenotype; date=20090715" ; primary_name "cid11" ; product "poly(A) polymerase Cid11 (predicted)" ;
chromosome2 GeneDB mRNA 828642 831336 . - . mRNA SPBC530.15c ; systematic_id "SPBC530.15c" ; colour "7" ; gene "SPBC530.15c ||| SPBC661.01" ; db_xref "SPD:25/25B05" ; synonym "SPBC661.01" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; product "spermidine family transporter (predicted)" ;
chromosome2 GeneDB mRNA 3907854 3908622 . + . mRNA SPBC1604.13c ; systematic_id "SPBC1604.13c" ; colour "7" ; gene "SPBC1604.13c ||| mrpl32" ; Alias "mrpl32" ; db_xref "SPD:01/01F03" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl32" ; product "mitochondrial ribosomal protein subunit L32 (predicted)" ;
chromosome2 GeneDB mRNA 3103284 3104851 . + . mRNA SPBC1778.04 ; systematic_id "SPBC1778.04" ; colour "2" ; gene "spo6 ||| SPBC1778.04" ; Alias "spo6" ; db_xref "SPD:25/25C09" ; GO "GO:0007135; meiosis II
GO:0030437; sporulation (sensu Fungi)
GO:0005654; nucleoplasm
GO:0019887; protein kinase regulator activity
GO:0006468; protein amino acid phosphorylation
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=orthologous to S. cerevisiae YDR052C; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spo6" ; product "Spo4-Spo6 kinase complex regulatory subunit Spo6" ;
chromosome2 GeneDB mRNA 790856 792065 . - . mRNA SPBC530.03c ; systematic_id "SPBC530.03c" ; colour "7" ; gene "bag102 ||| bag1-b ||| SPBC530.03c" ; note "budding yeast presumed ortholog YIL016W does not have N-terminal ubiquitin domain" ; Alias "bag102" ; db_xref "SPD:07/07A05" ; synonym "bag1-b" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL016W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006457; protein folding" ; primary_name "bag102" ; product "BAG family molecular chaperone regulator Bag102 (predicted)" ;
chromosome2 GeneDB mRNA 1670449 1673825 . + . mRNA SPBC19C2.01 ; systematic_id "SPBC19C2.01" ; colour "2" ; gene "cdc28 ||| prp8 ||| SPBC21B10.01c ||| SPBC19C2.01 ||| SPBC874.01" ; Alias "cdc28" ; obsolete_name "SPBC21B10.01c ||| SPBC874.01" ; db_xref "SPD:41/41A05" ; synonym "prp8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705 ||| term=orthologous to S. cerevisiae YNR011C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005682; snRNP U5
GO:0005681; spliceosome complex
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "cdc28" ; product "ATP-dependent RNA helicase Cdc28" ;
chromosome2 GeneDB mRNA 653028 655337 . - . mRNA SPBC947.10 ; systematic_id "SPBC947.10" ; colour "7" ; gene "SPBC947.10" ; Alias "dsc1" ; db_xref "SPD:27/27H06" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0043162; ubiquitin-dependent protein catabolism via the multivesicular body pathway
GO:0005794; Golgi apparatus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060726 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YKL034W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; primary_name "dsc1" ; product "ubiquitin-protein ligase E3 (predicted)" ; reserved_name "dsc1" ;
chromosome2 GeneDB mRNA 1513393 1513739 . - . mRNA SPBC83.02c ; systematic_id "SPBC83.02c" ; colour "7" ; gene "rpl4302 ||| rpl43-2 ||| rpl43 ||| SPBC83.02c ||| rpl37a-2" ; Alias "rpl4302" ; db_xref "SPD:39/39G05" ; synonym "rpl43-2 ||| rpl43 ||| rpl37a-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR043W and YJR094W-A; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "rpl4302" ; product "60S ribosomal protein L37a (predicted)" ;
chromosome2 GeneDB mRNA 3169409 3171345 . + . mRNA SPBC609.05 ; systematic_id "SPBC609.05" ; colour "2" ; gene "SPBC609.05 ||| pob3" ; Alias "pob3" ; db_xref "SPD:25/25F06" ; GO "GO:0035101; FACT complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0005515; protein binding
GO:0045899; positive regulation of RNA polymerase II transcriptin preinitiation complex assembly
GO:0034613; cellular protein localization
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0043486; histone exchange
GO:0000070; mitotic sister chromatid segregation
GO:0006334; nucleosome assembly
GO:0006351; transcription, DNA-dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML069W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17614284; date=20070813 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pob3" ; product "FACT complex component Pob3" ;
chromosome2 GeneDB mRNA 2972138 2974559 . + . mRNA SPBC2D10.04 ; db_xref "SPD:37/37B06" ; systematic_id "SPBC2D10.04" ; colour "10" ; GO "GO:0005509; calcium ion binding
GO:0005737; cytoplasm
GO:0070086; ubiquitin-dependent endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=orthologous to S. cerevisiae YJL084C and YKR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC2D10.04" ; product "arrestin Aly1 related, implicated in endocytosis" ;
chromosome2 GeneDB mRNA 2037092 2037394 . + . mRNA SPBC29A3.21 ; db_xref "SPD:51/51F08" ; systematic_id "SPBC29A3.21" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC29A3.21" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1358677 1360566 . + . mRNA SPBC8D2.01 ; systematic_id "SPBC8D2.01" ; colour "7" ; gene "gsk31 ||| SPBC8D2.01" ; Alias "gsk31" ; obsolete_name "pi064" ; db_xref "SPD:33/33D04" ; GO "GO:0005737; cytoplasm
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=glycogen synthase kinase 3 (GSK- 3) subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YMR139W and YDL079C and YNL307C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gsk31" ; product "serine/threonine protein kinase Gsk31 (predicted)" ;
chromosome2 GeneDB mRNA 1787004 1789088 . - . mRNA SPBC18H10.10c ; systematic_id "SPBC18H10.10c" ; colour "7" ; gene "saf4 ||| SPBC18H10.10c" ; Alias "saf4" ; obsolete_name "cwf16 ||| cwc16" ; db_xref "SPD:14/14C08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CCDC130 ortholog; date=20090922" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "saf4" ; product "splicing associated factor Saf4 (predicted)" ; reserved_name "saf4" ;
chromosome2 GeneDB mRNA 3540120 3540780 . + . mRNA SPBC887.01 ; db_xref "SPD:42/42C05" ; systematic_id "SPBC887.01" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0019509; methionine salvage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC887.01" ; product "acireductone dioxygenase family (predicted)" ;
chromosome2 GeneDB mRNA 3538582 3538963 . + . mRNA SPBC1105.17 ; systematic_id "SPBC1105.17" ; colour "2" ; gene "cnp1 ||| sim2 ||| SPBC1105.17" ; Alias "cnp1" ; db_xref "SPD:02/02E03" ; synonym "sim2" ; GO "GO:0043505; centromere-specific nucleosome
GO:0000780; condensed nuclear chromosome, pericentric region
GO:0000939; inner kinetochore of condensed chromosome
GO:0019237; centromeric DNA binding
GO:0005515; protein binding
GO:0031508; centric heterochromatin formation
GO:0030702; chromatin silencing at centromere
GO:0051382; kinetochore assembly
GO:0000070; mitotic sister chromatid segregation
GO:0034501; protein localization to kinetochore
GO:0031134; sister chromatid biorientation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:10864871; date=20100723 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YKL049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CenH3 ortholog; date=20090423 ||| term=histone fold; date=19700101 ||| term=name description, Silencng In the Middle of the centromere; date=20100727" ; primary_name "cnp1" ; product "centromere-specific histone H3 CENP-A" ;
chromosome2 GeneDB mRNA 3287725 3289323 . + . mRNA SPBC20F10.03 ; db_xref "SPD:20/20G05" ; systematic_id "SPBC20F10.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=armadillo repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPBC20F10.03" ; product "conserved eukaryotic protein" ;
chromosome2 GeneDB mRNA 2809874 2810444 . + . mRNA SPBC32F12.15 ; systematic_id "SPBC32F12.15" ; colour "7" ; gene "SPBC32F12.15 ||| tfb5" ; db_xref "SPD:51/51F06" ; Alias "tfb5" ; controlled_curation "term=orthologous to S. cerevisiae YDR079C-A; date=19700101 ||| term=disease associated, tricothiodystrophy disorder; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006289; nucleotide-excision repair
GO:0005634; nucleus
GO:0005675; transcription factor TFIIH complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0003743; translation initiation factor activity" ; primary_name "tfb5" ; product "transcription factor TFIIH complex subunit Tfb5 (predicted)" ;
chromosome2 GeneDB mRNA 1779244 1781833 . + . mRNA SPBC18H10.05 ; db_xref "SPD:36/36B06" ; systematic_id "SPBC18H10.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR102C and YKL121W; date=19700101 ||| term=WD repeat protein; date=20071214 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human WDR44 ortholog; date=20100718" ; colour "10" ; gene "SPBC18H10.05" ; product "WD repeat protein, human WDR44 family" ;
chromosome2 GeneDB mRNA 3067955 3068774 . - . mRNA SPBC30D10.14 ; db_xref "SPD:09/09B12" ; systematic_id "SPBC30D10.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL049C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPBC30D10.14" ; product "dienelactone hydrolase family (predicted)" ;
chromosome2 GeneDB mRNA 1122828 1124653 . + . mRNA SPBC1709.12 ; systematic_id "SPBC1709.12" ; colour "7" ; note "GO tracable author statements (TAS) (pers. comm. Yasmine Mamnun and Takashi Toda)" ; Alias "rid1" ; db_xref "SPD:22/22G09" ; GO "GO:0005634; nucleus
GO:0031097; medial ring
GO:0051020; GTPase binding
GO:0017048; Rho GTPase binding
GO:0030036; actin cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to M. grisea MG01308.4; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, RIng- localized protein with homology to Diaphanous GTPase- binding domain; cv=name_description; date=20091119 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "rid1" ; product "GTPase binding protein Rid1 (predicted)" ; reserved_name "rid1" ;
chromosome2 GeneDB mRNA 705932 706666 . + . mRNA SPBPJ4664.05 ; db_xref "SPD:41/41C09" ; systematic_id "SPBPJ4664.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR140W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBPJ4664.05" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 3239223 3240947 . - . mRNA SPBC19F8.06c ; systematic_id "SPBC19F8.06c" ; colour "7" ; db_xref "SPD:35/35F07" ; Alias "meu22" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0006865; amino acid transport
GO:0016021; integral to membrane
GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu22" ; product "amino acid permease, predicted Meu22" ;
chromosome2 GeneDB mRNA 2486542 2488144 . + . mRNA SPBC17F3.01c ; systematic_id "SPBC17F3.01c" ; colour "2" ; gene "rga5 ||| SPBC17F3.01c ||| SPBC557.01" ; Alias "rga5" ; db_xref "SPD:16/16H09" ; synonym "SPBC557.01" ; GO "GO:0051286; cell tip
GO:0031097; medial ring
GO:0005100; Rho GTPase activator activity
GO:0090334; negative regulation of 1,3-beta-glucan biosynthesis
GO:0008360; regulation of cell shape
GO:0032321; positive regulation of Rho GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12519200; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:11737264; date=20100917 ||| term=phenotype, cell morphology, elongated and multiseptate; db_xref=PMID:12519200; qualifier=deletion|at_high_temperature; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YOR134W and YDR389W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rga5" ; product "Rho-type GTPase activating protein Rga5" ;
chromosome2 GeneDB mRNA 477189 478738 . + . mRNA SPBC428.18 ; systematic_id "SPBC428.18" ; colour "2" ; gene "cdt1 ||| SPBC428.18" ; Alias "cdt1" ; db_xref "SPD:20/20F09" ; GO "GO:0005656; pre-replicative complex
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0006267; pre-replicative complex assembly
GO:0030174; regulation of DNA replication initiation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8313888; date=19700101 ||| term=orthologous to S. cerevisiae YJR046W; date=19700101 ||| term=gene expression, expressed during G1-S phase; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cdt1" ; product "replication licensing factor Cdt1" ;
chromosome2 GeneDB mRNA 1953419 1954712 . - . mRNA SPBC16E9.17c ; systematic_id "SPBC16E9.17c" ; colour "2" ; gene "rem1 ||| SPBC16E9.17c" ; Alias "rem1" ; db_xref "SPD:32/32G07" ; GO "GO:0051445; regulation of progression through meiotic cell cycle
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0006279; premeiotic DNA synthesis
GO:0007131; meiotic recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=B-type cyclin; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:16024772; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "rem1" ; product "meiosis-specific cyclin Rem1" ;
chromosome2 GeneDB mRNA 3317783 3319516 . + . mRNA SPBC17D11.06 ; systematic_id "SPBC17D11.06" ; colour "2" ; gene "spp2 ||| pri2 ||| SPBC17D11.06" ; Alias "spp2" ; db_xref "SPD:35/35B07" ; synonym "pri2" ; GO "GO:0005658; alpha DNA polymerase:primase complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0006269; DNA replication, synthesis of RNA primer
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:11027257; date=20100708 ||| term=phenotype, cut; qualifier=ts; db_xref=PMID:11027257; date=20100708 ||| term=orthologous to S. cerevisiae YKL045W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "spp2" ; product "DNA primase large subunit Spp2" ;
chromosome2 GeneDB mRNA 1194337 1195711 . + . mRNA SPBC4.05 ; systematic_id "SPBC4.05" ; colour "2" ; gene "mlo2 ||| SPBC4.05" ; Alias "mlo2" ; db_xref "SPD:32/32C04" ; GO "GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-UBR1 type; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c14orf130 ortholog; date=20100723 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, Missegregation and Lethal when Overexpressed; db_xref=PMID:8972853; date=20100723" ; primary_name "mlo2" ; product "zinc finger protein Mlo2" ;
chromosome2 GeneDB mRNA 2504148 2504998 . - . mRNA SPBC365.04c ; db_xref "SPD:08/08C05" ; systematic_id "SPBC365.04c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis
GO:0005730; nucleolus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YDL213C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC365.04c" ; product "RNA-binding protein, involved in ribosome biogenesis (predicted)" ;
chromosome2 GeneDB mRNA 1893038 1894262 . + . mRNA SPBP16F5.02 ; systematic_id "SPBP16F5.02" ; colour "2" ; gene "mcs2 ||| SPBP16F5.02" ; Alias "mcs2" ; db_xref "SPD:32/32E06" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0004861; cyclin-dependent protein kinase inhibitor activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006367; transcription inititation from RNA polymerase II promoter
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:8467814; date=20100824 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YPR025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Mitotic Catastrophe Suppressor; cv=name_description; date=19700101 ||| term=human CCNH ortholog; date=20110113" ; primary_name "mcs2" ; product "TFIIH complex cyclin Mcs2" ;
chromosome2 GeneDB mRNA 2716865 2718973 . + . mRNA SPBC4F6.14 ; db_xref "SPD:37/37C01" ; systematic_id "SPBC4F6.14" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YPL043W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC4F6.14" ; product "RNA-binding protein (predicted)" ;
chromosome2 GeneDB mRNA 2222650 2223060 . - . mRNA SPBC14C8.11c ; db_xref "SPD:03/03C02" ; systematic_id "SPBC14C8.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC14C8.11c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 386506 387100 . - . mRNA SPBC106.07c ; systematic_id "SPBC106.07c" ; colour "7" ; gene "SPBC106.07c" ; note "was previously annotated as an acetyltransferase based on S. cerevisiae data, but this annotation was unconfirmed and has subsequently been removed in SGD" ; db_xref "SPD:04/04H11" ; GO "GO:0005739; mitochondrion
GO:0017196; N-terminal peptidyl-methionine acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YGR147C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "N alpha-acetylation related protein Nat2 (predicted)" ;
chromosome2 GeneDB mRNA 2201208 2202631 . + . mRNA SPBC1815.01 ; systematic_id "SPBC1815.01" ; colour "7" ; db_xref "SPD:32/32H02" ; Alias "eno101" ; synonym "eno1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR254W and YHR174W and YOR393W and YPL281C and YMR323W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101" ; GO "GO:0006096; glycolysis
GO:0004634; phosphopyruvate hydratase activity" ; primary_name "eno101" ; product "enolase (predicted)" ; EC_number "4.2.1.11" ;
chromosome2 GeneDB mRNA 4100571 4103047 . + . mRNA SPBC56F2.07c ; db_xref "SPD:28/28G02" ; systematic_id "SPBC56F2.07c" ; colour "7" ; GO "GO:0042254; ribosome large subunit biogenesis
GO:0016887; ATPase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YLR397C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC56F2.07c" ; product "ribosome biogenesis factor recycling AAA family ATPase (predicted)" ;
chromosome2 GeneDB mRNA 3787840 3788799 . - . mRNA SPBC31F10.17c ; db_xref "SPD:04/04E03" ; systematic_id "SPBC31F10.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC31F10.17c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1143731 1146543 . - . mRNA SPBC409.07c ; systematic_id "SPBC409.07c" ; colour "2" ; db_xref "SPD:33/33D12" ; Alias "wis1" ; synonym "spc2 ||| smf2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:1756736; date=20100705 ||| term=phenotype, cell morphology, small cells; qualifier=mutant_allele; allele=wis1-DD; db_xref=PMID:1756736; date=20100705 ||| term=orthologous to S. cerevisiae YJL128C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Sty1; date=20100826 ||| term=tartget of Win1; qualifier=phosphorylated_by; date=20101121" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004708; MAP kinase kinase activity
GO:0005515; protein binding
GO:0006468; protein amino acid phosphorylation
GO:0007346; regulation of progression through mitotic cell cycle
GO:0043555; regulation of translation in response to stress
GO:0046685; cellular response to arsenic
GO:0070301; cellular response to hydrogen peroxide
GO:0006970; response to osmotic stress
GO:0051403; stress-activated MAPK cascade
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0070314; G1 to G0 transition" ; primary_name "wis1" ; product "MAP kinase kinase Wis1" ;
chromosome2 GeneDB mRNA 2941840 2944586 . - . mRNA SPBC1703.14c ; systematic_id "SPBC1703.14c" ; colour "2" ; gene "top1 ||| SPBC1703.14c" ; Alias "top1" ; db_xref "SPD:33/33H03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:6090122; date=19700101 ||| term=orthologous to S. cerevisiae YOL006C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human TOP1 ortholog; date=20100217" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0007076; mitotic chromosome condensation
GO:0003917; DNA topoisomerase type I activity
GO:0006333; chromatin assembly or disassembly
GO:0006265; DNA topological change
GO:0006325; establishment and/or maintenance of chromatin architecture
GO:0042790; transcription of nuclear rRNA large RNA polymerase I transcript" ; primary_name "top1" ; product "DNA topoisomerase I" ; EC_number "5.99.1.2" ;
chromosome2 GeneDB mRNA 853612 857463 . + . mRNA SPBC36.07 ; systematic_id "SPBC36.07" ; colour "7" ; gene "SPBC36.07 ||| iki3" ; Alias "iki3" ; db_xref "SPD:48/48E10" ; GO "GO:0033588; Elongator holoenzyme complex
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, familial dysautonomia; date=20061212 ||| term=orthologous to S. cerevisiae YLR384C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human IKBKAP ortholog; date=20100127" ; primary_name "iki3" ; product "elongator subunit Iki3 (predicted)" ;
chromosome2 GeneDB mRNA 3773308 3774212 . + . mRNA SPBC31F10.12 ; db_xref "SPD:11/11E02" ; systematic_id "SPBC31F10.12" ; colour "7" ; GO "GO:0003723; RNA binding
GO:0006412; translation
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PUA domain; date=19700101 ||| term=orthologous to S. cerevisiae YER007C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC31F10.12" ; product "RNA-binding protein Tma20 (predicted)" ;
chromosome2 GeneDB mRNA 3369513 3372262 . - . mRNA SPBC3B8.11 ; systematic_id "SPBC3B8.11" ; colour "7" ; gene "rrn6 ||| SPBC3B8.11" ; note "ortholog for S. cerevisiae RRN6, alignment will be in next Pfam release" ; Alias "rrn6" ; db_xref "SPD:38/38F05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL014C; date=20070807 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0000120; RNA polymerase I transcription factor complex
GO:0003701; RNA polymerase I transcription factor activity
GO:0006360; transcription from RNA polymerase I promoter" ; primary_name "rrn6" ; product "RNA polymerase I transcription factor subunit Rrn6 (predicted)" ;
chromosome2 GeneDB mRNA 1664541 1665121 . + . mRNA SPBC21B10.04c ; systematic_id "SPBC21B10.04c" ; colour "2" ; gene "nrf1 ||| SPBC21B10.04c" ; Alias "nrf1" ; db_xref "SPD:31/31C09" ; GO "GO:0032153; cell division site
GO:0000329; vacuolar membrane
GO:0005083; small GTPase regulator activity
GO:0007163; regulation of establishment and/or maintenance of cell polarity
GO:0007264; small GTPase mediated signal transduction
GO:0042144; vacuole fusion, non-autophagic" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER072W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "nrf1" ; product "GTPase regulator Nrf1" ;
chromosome2 GeneDB mRNA 1558939 1561122 . - . mRNA SPBC29B5.04c ; db_xref "SPD:33/33E01" ; systematic_id "SPBC29B5.04c" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0030036; actin cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL094W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPBC29B5.04c" ; product "actin cortical patch protein (predicted)" ;
chromosome2 GeneDB mRNA 3998547 3999704 . - . mRNA SPBC3B9.06c ; systematic_id "SPBC3B9.06c" ; colour "2" ; db_xref "SPD:12/12F08" ; Alias "atg3" ; synonym "apg3" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006612; protein targeting to vacuole
GO:0000045; autophagic vacuole formation
GO:0006501; C-terminal protein lipidation
GO:0032258; CVT pathway
GO:0019776; Atg8 ligase activity
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; primary_name "atg3" ; product "autophagy associated protein Atg3" ;
chromosome2 GeneDB mRNA 3588806 3590386 . + . mRNA SPBC16D10.02 ; systematic_id "SPBC16D10.02" ; colour "7" ; gene "trm11 ||| SPBC16D10.02" ; Alias "trm11" ; db_xref "SPD:23/23H07" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0043528; tRNA (m2G10) methyltransferase complex
GO:0030488; tRNA methylation
GO:0004809; tRNA (guanine-N2-)-methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trm11" ; product "tRNA (guanine-N2-)-methyltransferase catalytic subunit Trm11 (predicted)" ;
chromosome2 GeneDB mRNA 2831780 2834033 . + . mRNA SPBC19C7.06 ; systematic_id "SPBC19C7.06" ; colour "7" ; gene "SPBC19C7.06 ||| prs1" ; Alias "prs1" ; db_xref "KEGG:MAP00330; ||| KEGG:MAP00970; ||| SPD:37/37F01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR020W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006433; prolyl-tRNA aminoacylation
GO:0004827; proline-tRNA ligase activity" ; primary_name "prs1" ; product "cytoplasmic proline-tRNA ligase Prs1 (predicted)" ; EC_number "6.1.1.15" ;
chromosome2 GeneDB mRNA 2340394 2341774 . + . mRNA SPBC24C6.13 ; Alias "new16" ; systematic_id "SPBC24C6.13" ; colour "10" ; controlled_curation "term=orthologous to S. cerevisiae YMR244C-A; date=20090721 ||| term=conserved in Metazoa; date=20090721 ||| term=predominantly single copy; date=20090721 ||| term=conserved in Vertebrates; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=conserved in Eukaryotes; date=20090721 ||| term=predominantly uniformly single copy (one to one); date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm" ; gene "SPBC24C6.13" ; primary_name "new16" ; product "conserved eukaryotic protein" ; note "family submitted to Pfam, cytochrome C oxidase subunit 6 annotation needs validating, S. cerevisiae is induced in response to MMS" ;
chromosome2 GeneDB mRNA 1666988 1669628 . + . mRNA SPBC21B10.03c ; db_xref "SPD:28/28E04" ; systematic_id "SPBC21B10.03c" ; colour "7" ; GO "GO:0006378; mRNA polyadenylation
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0006417; regulation of translation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR178C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC21B10.03c" ; product "ataxin-2 homolog (predicted)" ;
chromosome2 GeneDB mRNA 3232124 3234431 . - . mRNA SPBC19F8.03c ; db_xref "SPD:27/27D05" ; systematic_id "SPBC19F8.03c" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0030276; clathrin binding
GO:0005546; phosphatidylinositol-4,5-bisphosphate binding
GO:0006897; endocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR241C and YHR161C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human PICALM ortholog; date=20100217 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; gene "SPBC19F8.03c" ; product "ENTH/VHS domain protein (predicted)" ;
chromosome2 GeneDB mRNA 2512613 2514978 . + . mRNA SPBC365.10 ; systematic_id "SPBC365.10" ; colour "2" ; gene "arp5 ||| SPBC365.10" ; Alias "arp5" ; db_xref "SPD:46/46G02" ; GO "GO:0006338; chromatin remodeling
GO:0031011; Ino80 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arp5" ; product "actin-like protein Arp5" ;
chromosome2 GeneDB mRNA 1861638 1863115 . - . mRNA SPBC3H7.12 ; systematic_id "SPBC3H7.12" ; colour "2" ; gene "SPBC3H7.12 ||| rav2" ; Alias "rav2" ; db_xref "SPD:11/11E09" ; GO "GO:0043291; RAVE complex
GO:0071277; cellular response to calcium ion
GO:0042493; response to drug
GO:0007035; vacuolar acidification
GO:0070072; vacuolar proton-transporting two- sector ATPase complex assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR202C; db_xref=PMID:18441123; date=20080901 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rav2" ; product "RAVE complex subunit Rav2" ;
chromosome2 GeneDB mRNA 1795030 1796517 . + . mRNA SPBC18H10.15 ; systematic_id "SPBC18H10.15" ; colour "2" ; gene "ppk23 ||| SPBC18H10.15" ; Alias "ppk23" ; db_xref "SPD:20/20A05" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ppk23" ; product "serine/threonine protein kinase Ppk23" ;
chromosome2 GeneDB mRNA 290876 291958 . - . mRNA SPBC1773.05c ; systematic_id "SPBC1773.05c" ; colour "2" ; gene "tms1 ||| SPBC1773.05c" ; Alias "tms1" ; db_xref "SPD:40/40C09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=experimental tools, monoclonal antibodies; db_xref=PMID:7737676; cv=ex_tools; date=20050413 ||| term=orthologous to S. cerevisiae YJR159W and YDL246C and YLR070C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003939; L-iditol 2-dehydrogenase activity
GO:0046526; D-xylulose reductase activity
GO:0019407; hexitol catabolism" ; primary_name "tms1" ; product "hexitol dehydrogenase (predicted)" ; EC_number "1.1.1.-" ;
chromosome2 GeneDB mRNA 3725363 3727234 . + . mRNA SPBC25D12.06 ; db_xref "SPD:35/35D04" ; systematic_id "SPBC25D12.06" ; colour "10" ; GO "GO:0008026; ATP-dependent helicase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100824" ; gene "SPBC25D12.06" ; product "RNA helicase (predicted)" ;
chromosome2 GeneDB mRNA 3246584 3248732 . + . mRNA SPBC25H2.16c ; db_xref "SPD:27/27F01" ; systematic_id "SPBC25H2.16c" ; colour "7" ; GO "GO:0006886; intracellular protein transport
GO:0006896; Golgi to vacuole transport
GO:0005802; Golgi trans face" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=GAT domain; qualifier=inferred from context; date=19700101 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YHR108W and YDR358W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC25H2.16c" ; product "adaptin (predicted)" ;
chromosome2 GeneDB mRNA 2013049 2014870 . + . mRNA SPBP23A10.08 ; systematic_id "SPBP23A10.08" ; colour "2" ; gene "alp5 ||| SPBP23A10.08" ; Alias "alp5" ; db_xref "SPD:22/22F05" ; synonym "arp4" ; GO "GO:0043189; H4/H2A histone acetyltransferase complex
GO:0031011; Ino80 complex
GO:0035267; NuA4 histone acetyltransferase complex
GO:0000812; Swr1 complex
GO:0005634; nucleus
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0030702; chromatin silencing at centromere
GO:0016573; histone acetylation
GO:0000278; mitotic cell cycle
GO:0000070; mitotic sister chromatid segregation
GO:0031134; sister chromatid biorientation
GO:0043486; histone exchange
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, spindle checkpoint, required; db_xref=PMID:15483052; cv=phenotype; date=20060106 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15483052; date=19700101 ||| term=orthologous to S. cerevisiae YJL081C; date=19700101 ||| term=human BAF53 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230" ; primary_name "alp5" ; product "actin-like protein Arp4" ;
chromosome2 GeneDB mRNA 1120750 1121959 . - . mRNA SPBC1709.11c ; systematic_id "SPBC1709.11c" ; colour "2" ; gene "png2 ||| SPBC1709.11c" ; Alias "png2" ; db_xref "SPD:14/14G10" ; GO "GO:0033698; Clr6 histone deacetylase complex I/I'
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0016568; chromatin modification
GO:0000123; histone acetyltransferase complex
GO:0035064; methylated histone residue binding
GO:0016573; histone acetylation
GO:0070210; Rpd3L-Expanded
GO:0019787; small conjugating protein ligase activity
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YHR090C and YNL097C and YOR064C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "png2" ; product "ING family homolog Png2" ;
chromosome2 GeneDB mRNA 2145027 2145555 . + . mRNA SPBC1711.18 ; Alias "tam9" ; systematic_id "SPBC1711.18" ; GO "GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=orthologous to S. cerevisiae YBR122C; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "7" ; primary_name "tam9" ; gene "SPBC1711.18" ; product "mitochondrial ribosomal protein subunit L36, MrpL36/YmL36" ;
chromosome2 GeneDB mRNA 1463896 1465599 . + . mRNA SPBC32H8.07 ; systematic_id "SPBC32H8.07" ; colour "2" ; gene "git5 ||| gpb1 ||| SPBC32H8.07" ; Alias "git5" ; db_xref "SPD:41/41G09" ; synonym "gpb1" ; GO "GO:0005834; heterotrimeric G-protein complex
GO:0007186; G-protein coupled receptor protein signaling pathway
GO:0007190; adenylate cyclase activation
GO:0019933; cAMP-mediated signaling
GO:0010619; activation of adenylate cyclase activity by glucose-triggered G-protein signaling pathway
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0045014; negative regulation of transcription by glucose" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=warning, S. cerevisiae YOR212W is not functional ortholog; cv=warning; date=19700101 ||| term=orthologouus to S. cerevisiae YOR212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505" ; primary_name "git5" ; product "heterotrimeric G protein beta subunit Git5" ;
chromosome2 GeneDB mRNA 323961 325227 . - . mRNA SPBP26C9.02c ; systematic_id "SPBP26C9.02c" ; colour "2" ; gene "car1 ||| SPBP26C9.02c" ; Alias "car1" ; db_xref "SPD:32/32B09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, argininemia; date=20091016 ||| term=name description, CAtabolism of aRginine, after cerevisiae; cv=name_description; date=20091016 ||| term=experimental tools, deletion solves arginine-conversion problem; db_xref=PMID:20460254; date=20100601" ; GO "GO:0019547; arginine catabolism to ornithine
GO:0004053; arginase activity
GO:0005829; cytosol" ; primary_name "car1" ; product "arginase Car1" ; EC_number "3.5.3.1" ;
chromosome2 GeneDB mRNA 3674705 3676577 . - . mRNA SPBP8B7.20c ; db_xref "SPD:36/36F10" ; systematic_id "SPBP8B7.20c" ; colour "7" ; GO "GO:0031167; rRNA methylation
GO:0008173; RNA methyltransferase activity
GO:0006364; rRNA processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBP8B7.20c" ; product "RNA methyltransferase Nop2 (predicted)" ;
chromosome2 GeneDB mRNA 233267 234309 . - . mRNA SPBC660.17c ; db_xref "SPD:42/42E01" ; systematic_id "SPBC660.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC660.17c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2329741 2331781 . + . mRNA SPBC24C6.06 ; systematic_id "SPBC24C6.06" ; colour "2" ; gene "gpa1 ||| SPBC24C6.06" ; Alias "gpa1" ; db_xref "SPD:32/32F08" ; GO "GO:0005834; heterotrimeric G-protein complex
GO:0003924; GTPase activity
GO:0000747; conjugation with cellular fusion
GO:0060240; negative regulation of signal transduction during conjugation with cellular fusion
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1905818; date=19700101 ||| term=orthologous to S. cerevisiae YHR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gpa1" ; product "G-protein alpha subunit" ;
chromosome2 GeneDB mRNA 1203084 1206710 . + . mRNA SPBC725.02 ; systematic_id "SPBC725.02" ; colour "2" ; gene "mpr1 ||| spy1 ||| SPBC725.02" ; Alias "mpr1" ; db_xref "SPD:32/32A07" ; synonym "spy1" ; GO "GO:0005515; protein binding
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0034599; cellular response to oxidative stress
GO:0023034; intracellular signaling cascade" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL235C; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=name description, S. Pombe YPD1- like protein; cv=name_description; date=20091204 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:10940030; date=20101126" ; primary_name "mpr1" ; product "histidine-containing response regulator phosphotransferase Mpr1" ;
chromosome2 GeneDB mRNA 837552 840579 . - . mRNA SPBC36.02c ; db_xref "SPD:35/35G07" ; systematic_id "SPBC36.02c" ; colour "7" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC36.02c" ; product "spermidine family transporter (predicted)" ;
chromosome2 GeneDB mRNA 3441058 3441619 . - . mRNA SPBC2G2.03c ; systematic_id "SPBC2G2.03c" ; colour "7" ; gene "sbh1 ||| SPBC2G2.03c" ; Alias "sbh1" ; db_xref "SPD:04/04D01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER087C-B and YER019C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005784; translocon complex
GO:0006616; SRP-dependent cotranslational protein targeting to membrane, translocation
GO:0008565; protein transporter activity
GO:0006620; posttranslational protein targeting to membrane" ; primary_name "sbh1" ; product "translocon beta subunit Sbh1 (predicted)" ; reserved_name "sbh1" ;
chromosome2 GeneDB mRNA 1002263 1006513 . - . mRNA SPBC146.03c ; systematic_id "SPBC146.03c" ; colour "2" ; gene "cut3 ||| SPBC146.03c" ; Alias "cut3" ; db_xref "SPD:34/34A12" ; synonym "smc4" ; GO "GO:0000796; condensin complex
GO:0005737; cytoplasm
GO:0000939; inner kinetochore of condensed chromosome
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0007076; mitotic chromosome condensation
GO:0000070; mitotic sister chromatid segregation
GO:0034613; cellular protein localization
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; cv=phenotype; db_xref=PMID:7957061; date=19700101 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YLR086W; date=19700101 ||| term=protein sequence feature, NES; cv=sequence_feature; db_xref=PMID:10485849; date=19700101 ||| term=human hCAP-C ortholog; date=20080602 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:10485849; date=20090213 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:10485849; date=19700101" ; primary_name "cut3" ; product "condensin complex subunit Cut3" ;
chromosome2 GeneDB mRNA 3728195 3729325 . - . mRNA SPBC13G1.01c ; systematic_id "SPBC13G1.01c" ; colour "7" ; gene "SPBC13G1.01c ||| nam9" ; Alias "nam9" ; db_xref "SPD:15/15G02" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL137C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "nam9" ; product "mitochondrial ribosomal protein subunit S4 (predicted)" ;
chromosome2 GeneDB mRNA 1589237 1590835 . + . mRNA SPBC28F2.11 ; db_xref "SPD:17/17F10" ; systematic_id "SPBC28F2.11" ; colour "10" ; GO "GO:0003677; DNA binding
GO:0006916; anti-apoptosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog (cannot be distinguished); date=19700101 ||| term=human HMGB1 ortholog; db_xref=PMID:18701708; date=20081001 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC28F2.11 ||| hmg1-2" ; product "HMG box protein" ;
chromosome2 GeneDB mRNA 4182792 4184613 . - . mRNA SPBC14F5.13c ; db_xref "SPD:35/35G05" ; systematic_id "SPBC14F5.13c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR481C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0000329; vacuolar membrane (sensu Fungi)
GO:0006470; protein amino acid dephosphorylation
GO:0004035; alkaline phosphatase activity" ; gene "SPBC14F5.13c" ; product "vacuolar membrane alkaline phosphatase (predicted)" ; EC_number "3.1.3.1" ;
chromosome2 GeneDB mRNA 3645659 3646749 . - . mRNA SPBP8B7.08c ; db_xref "SPD:17/17A09" ; systematic_id "SPBP8B7.08c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR435C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006481; C-terminal protein amino acid methylation
GO:0003880; C-terminal protein carboxyl methyltransferase activity
GO:0043623; cellular protein complex assembly" ; gene "SPBP8B7.08c" ; product "leucine carboxyl methyltransferase Ppm1 (predicted)" ; EC_number "2.1.1.-" ;
chromosome2 GeneDB mRNA 4086821 4088141 . - . mRNA SPBC56F2.12 ; systematic_id "SPBC56F2.12" ; colour "7" ; gene "SPBC56F2.12 ||| ilv5" ; Alias "ilv5" ; db_xref "SPD:19/19C11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR355C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004455; ketol-acid reductoisomerase activity
GO:0000002; mitochondrial genome maintenance
GO:0005739; mitochondrion
GO:0009099; valine biosynthesis
GO:0009097; isoleucine biosynthesis
GO:0006551; leucine metabolism" ; primary_name "ilv5" ; product "acetohydroxyacid reductoisomerase (predicted)" ; EC_number "1.1.1.86" ;
chromosome2 GeneDB mRNA 3892174 3892932 . + . mRNA SPBC1604.25 ; systematic_id "SPBC1604.25" ; colour "7" ; gene "SPBC1604.25 ||| pet117" ; Alias "pet117" ; db_xref "PMID:18488015" ; obsolete_name "SPNCRNA.430" ; synonym "SPNG1899" ; controlled_curation "term=orthologous to S. cerevisiae YER058W; date=20080102 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513" ; GO "GO:0005739; mitochondrion
GO:0008535; respiratory chain complex IV assembly" ; primary_name "pet117" ; product "Pet117 cytochrome c oxidase assemby protein (predicted)" ;
chromosome2 GeneDB mRNA 2000312 2000774 . - . mRNA SPBP23A10.03c ; db_xref "SPD:04/04B12" ; systematic_id "SPBP23A10.03c" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0006111; regulation of gluconeogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR511W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=ACN9 family; date=20100820" ; gene "SPBP23A10.03c" ; product "mitochondrial ACN9 family protein (predicted)" ;
chromosome2 GeneDB mRNA 1566403 1569561 . + . mRNA SPBC27.04 ; systematic_id "SPBC27.04" ; colour "2" ; note "was annotated in error as ortholog of S. cerevisiae YNL250W, annotation removed 19.1.2005" ; db_xref "SPD:30/30B07" ; Alias "uds1" ; GO "GO:0000935; barrier septum
GO:0071937; barrier septum formation involved in cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Up regulated During Septation; db_xref=PMID:20460254; date=20100601 ||| term=species distribution, conserved in Fungi; date=20100601 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100601" ; primary_name "uds1" ; product "septation protein Uds1" ;
chromosome2 GeneDB mRNA 1910146 1911815 . + . mRNA SPBP16F5.07 ; systematic_id "SPBP16F5.07" ; colour "2" ; gene "apm1 ||| SPBP16F5.07" ; Alias "apm1" ; db_xref "SPD:33/33B01" ; GO "GO:0030276; clathrin binding
GO:0016197; endosome transport
GO:0030121; AP-1 adaptor complex
GO:0005794; Golgi apparatus
GO:0005768; endosome
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport
GO:0071775; regulation of cell cycle cytokinesis
GO:0060237; regulation of fungal-type cell wall organization
GO:0032889; regulation of vacuole fusion, non- autophagic" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL259C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:17287513; date=20100917 ||| term=phenotype, sensitive to FK605; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=target is Prz1; date=20090817" ; primary_name "apm1" ; product "AP-1 adaptor complex mu subunit Apm1" ;
chromosome2 GeneDB mRNA 230318 233218 . + . mRNA SPBC660.16 ; db_xref "KEGG:MAP00030; ||| SPD:38/38H12" ; systematic_id "SPBC660.16" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, 6- phosphogluconate dehydrogenase deficiency; date=20061120 ||| term=subunit composition, homotetrameric; evidence=IDA; db_xref=PMID:10099784; cv=subunit_composition; date=20061122 ||| term=orthologous to S. cerevisiae YHR183W and YGR256W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009051; pentose-phosphate shunt, oxidative branch
GO:0004616; phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0050661; NADP binding" ; gene "SPBC660.16" ; product "phosphogluconate dehydrogenase, decarboxylating" ; EC_number "1.1.1.44" ;
chromosome2 GeneDB mRNA 478913 480930 . - . mRNA SPBC428.19c ; db_xref "SPD:35/35C09" ; systematic_id "SPBC428.19c" ; colour "7" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YMR093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; gene "SPBC428.19c" ; product "U3 snoRNP protein Utp15 (predicted)" ;
chromosome2 GeneDB mRNA 1657141 1659073 . - . mRNA SPBC21B10.07 ; db_xref "SPD:20/20B05" ; systematic_id "SPBC21B10.07" ; colour "7" ; GO "GO:0009277; cell wall (sensu Fungi)
GO:0044275; cellular carbohydrate catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR189C and YLR213C and YEL040W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC21B10.07" ; product "glycosyl hydrolase family 16 (predicted)" ;
chromosome2 GeneDB mRNA 1171565 1172644 . + . mRNA SPBC409.18 ; db_xref "SPD:12/12D02" ; systematic_id "SPBC409.18" ; colour "7" ; GO "GO:0000329; vacuolar membrane (sensu Fungi)
GO:0000810; diacylglycerol pyrophosphate phosphatase activity
GO:0006644; phospholipid metabolism
GO:0019932; second-messenger-mediated signaling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR284C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC409.18" ; product "phosphatidic acid phosphatase (predicted)" ;
chromosome2 GeneDB mRNA 4525283 4532885 . + . mRNA SPBCPT2R1.08c ; systematic_id "SPBCPT2R1.08c" ; colour "2" ; gene "SPBCPT2R1.08c ||| tlh2" ; Alias "tlh2" ; db_xref "SPD:52/52C12" ; GO "GO:0043140; ATP-dependent 3' to 5' DNA helicase activity
GO:0000722; telomere maintenance via recombination
GO:0000781; chromosome, telomeric region
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, present at telomere ends; db_xref=PMID:15591066; cv=genome_org; date=20060327 ||| term=dh repeats; db_xref=PMID:15591066; date=20060327 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAC212.11; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, transcriptionally repressed by Chp1; cv=gene_ex; db_xref=PMID:16407326; date=20060327 ||| term=gene expression, transcriptionally repressed by Rik1; cv=gene_ex; db_xref=PMID:16407326; date=20060327 ||| term=gene expression, transcriptionally repressed by Taz1; cv=gene_ex; db_xref=PMID:16407326; date=20060327" ; primary_name "tlh2" ; product "RecQ type DNA helicase Tlh1" ;
chromosome2 GeneDB mRNA 2951128 2952497 . + . mRNA SPBC2A9.03 ; db_xref "SPD:20/20G01" ; systematic_id "SPBC2A9.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPBC2A9.03" ; product "WD40/YVTN repeat-like" ;
chromosome2 GeneDB mRNA 737617 738906 . - . mRNA SPBC119.11c ; systematic_id "SPBC119.11c" ; colour "2" ; gene "pac1 ||| hcs ||| SPBC119.11c" ; Alias "pac1" ; db_xref "SPD:32/32E01" ; synonym "hcs" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0004525; ribonuclease III activity
GO:0031137; regulation of conjugation with cellular fusion
GO:0003723; RNA binding
GO:0016180; snRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR239C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pac1" ; product "double-strand-specific ribonuclease Pac1" ; EC_number "3.1.26.3" ;
chromosome2 GeneDB mRNA 539396 540117 . + . mRNA SPBC649.04 ; systematic_id "SPBC649.04" ; colour "2" ; db_xref "SPD:39/39H08" ; Alias "uvi15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, growth defect, required for stationary phase; db_xref=PMID:7898433; cv=phenotype; date=20091009 ||| term=phenotype, growth defect, required during nutrient depletion; db_xref=PMID:7898433; cv=phenotype; date=20091009 ||| term=orthologous to S. cerevisiae YDL012C and YDR210W and YBR016W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0034605; cellular response to heat
GO:0006974; response to DNA damage stimulus
GO:0031670; cellular response to nutrient
GO:0070317; negative regulation of G0 to G1 transition" ; primary_name "uvi15" ; product "UV-induced protein Uvi15" ;
chromosome2 GeneDB mRNA 1279752 1281349 . - . mRNA SPBC3D6.06c ; db_xref "SPD:23/23C10" ; systematic_id "SPBC3D6.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL068W and YER099C and YHL011C and YKL181W and YOL061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0004749; ribose phosphate diphosphokinase activity
GO:0006189; 'de novo' IMP biosynthesis
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0000105; histidine biosynthesis
GO:0006166; purine ribonucleoside salvage
GO:0000162; tryptophan biosynthesis
GO:0005737; cytoplasm" ; gene "SPBC3D6.06c" ; product "ribose-phosphate pyrophosphokinase (predicted)" ; EC_number "2.7.6.1" ;
chromosome2 GeneDB mRNA 4515203 4515379 . - . mRNA SPBCPT2R1.05c ; systematic_id "SPBCPT2R1.05c" ; pseudo "_no_value" ; colour "13" ; gene "SPBCPT2R1.05c" ; product "pseudogene" ; note "region of homology to SPAC212.04 " ;
chromosome2 GeneDB mRNA 1345112 1347951 . - . mRNA SPBC27B12.11c ; db_xref "SPD:33/33F12" ; systematic_id "SPBC27B12.11c" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC27B12.11c" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB mRNA 575773 576291 . - . mRNA SPBC354.11c ; db_xref "SPD:05/05B08" ; systematic_id "SPBC354.11c" ; colour "6" ; gene "SPBC354.11c" ; product "dubious" ;
chromosome2 GeneDB mRNA 2282443 2283951 . + . mRNA SPBC16H5.09c ; systematic_id "SPBC16H5.09c" ; colour "7" ; gene "SPBC16H5.09c" ; Alias "omh2" ; db_xref "SPD:20/20B07" ; GO "GO:0000026; alpha-1,2-mannosyltransferase activity
GO:0035269; protein amino acid O-linked mannosylation
GO:0000032; cell wall mannoprotein biosynthesis
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR099W and YKR061W and YJL139C and YDR483W and YBR205W and YBR199W and YPL053C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100525" ; primary_name "omh2" ; product "alpha-1,2-mannosyltransferase Omh2 (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB mRNA 104676 107042 . + . mRNA SPBC359.01 ; systematic_id "SPBC359.01" ; colour "7" ; gene "SPBPB10D8.08 ||| SPBC359.01" ; Alias "SPBPB10D8.08" ; db_xref "SPD:51/51A03" ; synonym "SPBPB10D8.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; primary_name "SPBPB10D8.08" ; product "amino acid permease (predicted)" ;
chromosome2 GeneDB mRNA 2750903 2755005 . + . mRNA SPBC336.07 ; systematic_id "SPBC336.07" ; colour "2" ; gene "sfc3 ||| SPBC336.07" ; Alias "sfc3" ; db_xref "SPD:48/48F10" ; GO "GO:0000127; transcription factor TFIIIC complex
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003709; RNA polymerase III transcription factor activity
GO:0043035; chromatin insulator sequence binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; date=20070216 ||| term=orthologous to S. cerevisiae YAL001C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Eukaryotes only; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=species distribution, conserved in Vertebrates; date=20100824" ; primary_name "sfc3" ; product "transcription factor TFIIIC complex B box binding subunit Sfc3" ;
chromosome2 GeneDB mRNA 2566409 2567172 . + . mRNA SPBC29A10.12 ; systematic_id "SPBC29A10.12" ; colour "10" ; gene "SPBC29A10.12" ; note "functional inferences from Clan membership" ; db_xref "SPD:51/51B10" ; GO "GO:0005634; nucleus
GO:0006355; regulation of transcription, DNA- dependent
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "HMG-box variant" ;
chromosome2 GeneDB mRNA 2005957 2007160 . + . mRNA SPBP23A10.06 ; db_xref "SPD:14/14H07" ; systematic_id "SPBP23A10.06" ; colour "7" ; GO "GO:0016530; metallochaperone activity
GO:0071421; manganese ion transmembrane transport
GO:0005743; mitochondrial inner membrane
GO:0005384; manganese ion transporter activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YGR257C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBP23A10.06" ; product "mitochondrial manganese ion transporter (predicted)" ;
chromosome2 GeneDB mRNA 448866 449306 . + . mRNA SPBC428.04 ; systematic_id "SPBC428.04" ; colour "7" ; gene "SPBC428.04" ; db_xref "SPD:02/02B09" ; Alias "apq12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL040W; date=20091223 ||| term=species distribution, conserved in Fungi; date=20091223 ||| term=species distribution, conserved in Fungi only; date=20091223 ||| term=species distribution, conserved in Eukaryotes; date=20091223" ; GO "GO:0005788; endoplasmic reticulum
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0005635; nuclear envelope
GO:0010256; endomembrane organization
GO:0006998; nuclear envelope organization
GO:0044255; cellular lipid metabolic process" ; primary_name "apq12" ; product "nuclear membrane organization protein Apq12 (predicted)" ;
chromosome2 GeneDB mRNA 2977166 2978584 . + . mRNA SPBC2D10.06 ; systematic_id "SPBC2D10.06" ; colour "2" ; gene "rep1 ||| rec16 ||| SPBC2D10.06" ; Alias "rep1" ; db_xref "SPD:40/40E08" ; synonym "rec16" ; GO "GO:0030907; MBF transcription complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016566; specific transcriptional repressor activity
GO:0016563; transcriptional activator activity
GO:0010674; negative regulation of transcription from RNA polymerase II promoter, meiotic
GO:0010673; positive regulation of transcription from RNA polymerase II promoter, meiotic
GO:0051037; regulation of transcription, meiotic
GO:0045896; regulation of transcription, mitotic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17927811; date=20090110 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; date=20100122" ; primary_name "rep1" ; product "MBF transcription factor complex subunit Rep1" ;
chromosome2 GeneDB mRNA 2786843 2788166 . + . mRNA SPBC32F12.02 ; systematic_id "SPBC32F12.02" ; colour "2" ; gene "rec14 ||| SPBC32F12.02" ; Alias "rec14" ; db_xref "SPD:32/32B07" ; GO "GO:0007131; meiotic recombination
GO:0055087; Ski complex
GO:0006402; mRNA catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL213C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rec14" ; product "Ski complex subunit Rec14" ;
chromosome2 GeneDB mRNA 2139828 2140991 . + . mRNA SPBC1711.04 ; db_xref "SPD:17/17G06" ; systematic_id "SPBC1711.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR080W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005829; cytosol
GO:0004487; methylenetetrahydrofolate dehydrogenase (NAD+) activity
GO:0046656; folic acid biosynthetic process
GO:0009113; purine base biosynthetic process" ; gene "SPBC1711.04" ; product "methylenetetrahydrofolate reductase (predicted)" ; EC_number "1.5.1.15" ;
chromosome2 GeneDB mRNA 4332698 4333123 . - . mRNA SPBC16C6.03c ; db_xref "SPD:09/09E06" ; systematic_id "SPBC16C6.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL193W; attribution=pers. comm. E. Hartsuiker; date=20080116 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20080202" ; GO "GO:0000027; ribosomal large subunit assembly" ; colour "7" ; gene "SPBC16C6.03c" ; product "ribosome assembly protein (predicted)" ;
chromosome2 GeneDB mRNA 1013275 1015146 . + . mRNA SPBC146.07 ; systematic_id "SPBC146.07" ; colour "2" ; gene "prp2 ||| mis11 ||| SPBC146.07" ; Alias "prp2" ; db_xref "SPD:40/40F01" ; synonym "mis11" ; GO "GO:0000243; commitment complex
GO:0005686; snRNP U2
GO:0003729; mRNA binding
GO:0030515; snoRNA binding
GO:0000349; generation of catalytic spliceosome for first transesterification step
GO:0000348; nuclear mRNA branch site recognition
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SR family; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=human U2AF54 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YKL074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp2" ; product "U2AF large subunit (U2AF-59)" ;
chromosome2 GeneDB mRNA 3385802 3387441 . - . mRNA SPBC3B8.05 ; systematic_id "SPBC3B8.05" ; colour "7" ; gene "SPBC3B8.05" ; db_xref "SPD:21/21F06" ; synonym "dph1" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL103W; date=19700101 ||| term=human DPH1 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene name conflict; cv=warning; date=20100120" ; GO "GO:0017183; peptidyl-diphthamide biosynthesis from peptidyl-histidine
GO:0005737; cytoplasm
GO:0006417; regulation of translation" ; product "diphthamide biosynthesis protein Dph1 (predicted)" ;
chromosome2 GeneDB mRNA 2616237 2617444 . + . mRNA SPBC25B2.10 ; db_xref "SPD:12/12H04" ; systematic_id "SPBC25B2.10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBC25B2.10" ; product "Usp (universal stress protein) family protein" ;
chromosome2 GeneDB mRNA 966035 967463 . + . mRNA SPBP35G2.02 ; db_xref "SPD:07/07A10" ; systematic_id "SPBP35G2.02" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0010498; proteasomal protein catabolic process" ; gene "SPBP35G2.02" ; product "poteasome interacting protein (predicted)" ;
chromosome2 GeneDB mRNA 811060 812577 . - . mRNA SPBC530.10c ; systematic_id "SPBC530.10c" ; colour "2" ; gene "anc1 ||| SPBC530.10c" ; Alias "anc1" ; db_xref "SPD:32/32B08" ; GO "GO:0005743; mitochondrial inner membrane
GO:0005471; ATP:ADP antiporter activity
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YMR056C and YBL030C and YBR085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "anc1" ; product "mitochondrial adenine nucleotide carrier Anc1" ;
chromosome2 GeneDB mRNA 750762 753898 . + . mRNA SPBC119.17 ; systematic_id "SPBC119.17" ; colour "7" ; gene "SPBC119.17 ||| SPBC577.01" ; db_xref "SPD:47/47G06" ; synonym "SPBC577.01" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0008237; metallopeptidase activity
GO:0006508; proteolysis
GO:0006627; protein processing involved in protein targeting to mitochondrion
GO:0051603; proteolysis involved in cellular protein catabolic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR430C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "mitochondrial metalloendopeptidase (predicted)" ;
chromosome2 GeneDB mRNA 617277 618156 . - . mRNA SPBC839.09c ; systematic_id "SPBC839.09c" ; colour "7" ; gene "SPBC839.09c ||| mrp21" ; Alias "mrp21" ; db_xref "SPD:04/04B04" ; GO "GO:0003735; structural constituent of ribosome
GO:0005763; mitochondrial small ribosomal subunit
GO:0070124; mitochondrial translational initiation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL090W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mrp21" ; product "mitochondrial ribosomal protein subunit Mrp21 (predicted)" ;
chromosome2 GeneDB mRNA 3643189 3643630 . + . mRNA SPBP8B7.06 ; systematic_id "SPBP8B7.06" ; colour "2" ; gene "rpp201 ||| rpp2 ||| rpp2-1 ||| SPBP8B7.06" ; Alias "rpp201" ; db_xref "SPD:31/31D03" ; synonym "rpp2 ||| rpp2-1" ; GO "GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006414; translational elongation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL039W and YDR382W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpp201" ; product "60S acidic ribosomal protein P2A subunit (predicted)" ;
chromosome2 GeneDB mRNA 3429791 3431995 . + . mRNA SPBC4B4.09 ; systematic_id "SPBC4B4.09" ; colour "2" ; gene "usp105 ||| prp39 ||| SPBC4B4.09" ; Alias "usp105" ; db_xref "SPD:37/37G08" ; synonym "prp39" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005685; snRNP U1
GO:0030627; pre-mRNA 5'-splice site binding
GO:0000243; commitment complex
GO:0000395; nuclear mRNA 5'-splice site recognition
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HAT repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YML046W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "usp105" ; product "U1 snRNP-associated protein Usp105" ;
chromosome2 GeneDB mRNA 2319758 2320292 . - . mRNA SPBC12D12.08c ; systematic_id "SPBC12D12.08c" ; colour "2" ; gene "ned8 ||| nedd8 ||| ubl1 ||| SPBC12D12.08c ||| SPBC24C6.01c" ; Alias "ned8" ; db_xref "SPD:03/03B06" ; synonym "nedd8 ||| ubl1 ||| SPBC24C6.01c" ; GO "GO:0051443; positive regulation of ubiquitin ligase activity
GO:0045116; protein neddylation
GO:0031386; protein tag
GO:0019005; SCF ubiquitin ligase complex
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; db_xref=PMID:10880460; cv=phenotype; date=20100309 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:10880460; date=20100708 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Cul1; db_xref=PMID:10880460; date=20100825" ; primary_name "ned8" ; product "ubiquitin-like protein modifier Ned8" ;
chromosome2 GeneDB mRNA 775773 778591 . + . mRNA SPBC577.13 ; systematic_id "SPBC577.13" ; colour "7" ; gene "SPBC577.13 ||| syj2" ; Alias "syj2" ; db_xref "SPD:29/29E03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL106C and YOL065C and YIL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0046856; phosphoinositide dephosphorylation
GO:0006897; endocytosis
GO:0046488; phosphatidylinositol metabolism
GO:0048017; inositol lipid-mediated signaling
GO:0004445; inositol-polyphosphate 5-phosphatase activity" ; primary_name "syj2" ; product "inositol-polyphosphate 5-phosphatase, synaptojanin homolog 2 (predicted)" ; EC_number "3.1.3.36" ;
chromosome2 GeneDB mRNA 3361817 3362580 . + . mRNA SPBC11C11.07 ; systematic_id "SPBC11C11.07" ; colour "2" ; gene "rpl1801 ||| rpl18-1 ||| SPBC11C11.07 ||| rpl18" ; Alias "rpl1801" ; db_xref "SPD:40/40A01" ; synonym "rpl18-1 ||| rpl18" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL120C and YNL301C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl1801" ; product "60S ribosomal protein L18" ;
chromosome2 GeneDB mRNA 2982420 2983681 . - . mRNA SPBC2D10.10c ; systematic_id "SPBC2D10.10c" ; colour "2" ; gene "fib1 ||| fib ||| SPBC2D10.10c" ; Alias "fib1" ; db_xref "SPD:32/32B02" ; synonym "fib" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0008168; methyltransferase activity
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0000154; rRNA modification
GO:0001510; RNA methylation
GO:0003729; mRNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "fib1" ; product "fibrillarin" ;
chromosome2 GeneDB mRNA 2845643 2847515 . - . mRNA SPBC19C7.12c ; systematic_id "SPBC19C7.12c" ; colour "2" ; gene "SPBC19C7.12c ||| omh1" ; Alias "omh1" ; db_xref "SPD:18/18F01" ; GO "GO:0000026; alpha-1,2-mannosyltransferase activity
GO:0000032; cell wall mannoprotein biosynthesis
GO:0035269; protein amino acid O-linked mannosylation
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100525 ||| term=phenotype, cell morphology, pear shaped; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100625 ||| term=orthologous to S. cerevisiae YOR099W and YKR061W and YJL139C and YDR483W and YBR205W and YBR199W and YPL053C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "omh1" ; product "alpha-1,2-mannosyltransferase Omh1" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB mRNA 3274957 3275516 . - . mRNA SPBC25H2.05 ; systematic_id "SPBC25H2.05" ; colour "2" ; gene "egd2 ||| SPBC25H2.05 ||| nac1" ; Alias "egd2" ; obsolete_name "ucp15" ; db_xref "SPD:05/05B12" ; synonym "nac1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR193C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human NACA ortholog; date=20100217" ; GO "GO:0051083; cotranslational protein folding
GO:0005854; nascent polypeptide-associated complex
GO:0051082; unfolded protein binding
GO:0043130; ubiquitin binding
GO:0042788; polysomal ribosome" ; primary_name "egd2" ; product "nascent polypeptide-associated complex alpha subunit Egd2" ;
chromosome2 GeneDB mRNA 2837662 2839915 . - . mRNA SPBC19C7.09c ; systematic_id "SPBC19C7.09c" ; colour "2" ; gene "uve1 ||| uvde ||| SPBC19C7.09c" ; Alias "uve1" ; db_xref "SPD:33/33D09" ; synonym "uvde" ; GO "GO:0006298; mismatch repair
GO:0005634; nucleus
GO:0005739; mitochondrion
GO:0004519; endonuclease activity
GO:0043504; mitochondrial DNA repair
GO:0070914; UV-damaged DNA endonuclease-dependent excision repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=target of Rad12; db_xref=PMID:9023111; date=20090910 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "uve1" ; product "endonuclease Uve1" ; EC_number "3.-.-.-" ;
chromosome2 GeneDB mRNA 2121511 2122826 . - . mRNA SPBC23G7.12c ; systematic_id "SPBC23G7.12c" ; colour "7" ; gene "rpt6 ||| let1 ||| SPBC23G7.12c" ; Alias "rpt6" ; db_xref "SPD:32/32G02" ; synonym "let1" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0004175; endopeptidase activity
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YGL048C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpt6" ; product "19S proteasome regulatory subunit Rpt6 (predicted)" ;
chromosome2 GeneDB mRNA 581142 583448 . + . mRNA SPBC354.13 ; systematic_id "SPBC354.13" ; colour "7" ; gene "rga6 ||| SPBC354.13" ; Alias "rga6" ; db_xref "SPD:37/37H09" ; GO "GO:0005100; Rho GTPase activator activity
GO:0032319; regulation of Rho GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:11737264; date=20100917 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rga6" ; product "Rho-type GTPase activating protein Rga6 (predicted)" ;
chromosome2 GeneDB mRNA 3335027 3337062 . + . mRNA SPBC17D1.05 ; db_xref "SPD:17/17D10" ; systematic_id "SPBC17D1.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC17D1.05" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2516132 2518722 . - . mRNA SPBC365.12c ; systematic_id "SPBC365.12c" ; colour "2" ; gene "ish1 ||| SPBC365.12c" ; Alias "ish1" ; obsolete_name "isp1" ; db_xref "SPD:27/27F09" ; GO "GO:0033554; cellular response to stress
GO:0005515; protein binding
; nuclear membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11751918; date=19700101 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:11751918; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YML128C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ish1" ; product "LEA domain protein" ;
chromosome2 GeneDB mRNA 4485277 4487496 . - . mRNA SPBPB2B2.12c ; systematic_id "SPBPB2B2.12c" ; colour "2" ; gene "SPBPB2B2.12c" ; db_xref "SPD:49/49D07" ; Alias "gal10" ; GO "GO:0003978; UDP-glucose 4-epimerase activity
GO:0033499; galactose catabolic process via UDP- galactose
GO:0042125; protein amino acid galactosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, bifunctional enzyme; cv=cat_act; qualifier=predicted; date=20061113 ||| term=orthologous to S. cerevisiae YBR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gal10" ; product "UDP-glucose 4-epimerase/aldose 1-epimerase Gal10" ; EC_number "5.1.3.2 ||| 5.1.3.3" ;
chromosome2 GeneDB mRNA 4380469 4381237 . + . mRNA SPBC1539.10 ; systematic_id "SPBC1539.10" ; colour "7" ; gene "nop16 ||| SPBC1539.10" ; Alias "nop16" ; db_xref "SPD:09/09C03" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER002W; date=19700101 ||| term=human hspc111 and hspc185 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nop16" ; product "ribosome biogenesis protein Nop16 (predicted)" ;
chromosome2 GeneDB mRNA 4285978 4288180 . + . mRNA SPBC16A3.07c ; systematic_id "SPBC16A3.07c" ; colour "2" ; gene "nrm1 ||| SPBC16A3.07c" ; note "likely the functional homolog of the human pocket proteins p107 and p127, which are paralogs of Rb (pers. comm. Charly Chahwan)" ; Alias "nrm1" ; db_xref "SPD:15/15E09" ; GO "GO:0030907; MBF transcription complex
GO:0003714; transcription corepressor activity
GO:0060277; negative regulation of G1-specific transcription in mitotic cell cycle
GO:0010553; negative regulation of gene-specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by MBF complex; db_xref=PMID:16916637; cv=gene_ex; date=20060919 ||| term=orthologous to S. cerevisiae YNR009W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; db_xref=PMID:16916637; date=20100122" ; primary_name "nrm1" ; product "negative regulator of MBF" ;
chromosome2 GeneDB mRNA 3811374 3812373 . - . mRNA SPBC21C3.09c ; db_xref "SPD:10/10E01" ; systematic_id "SPBC21C3.09c" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0006572; tyrosine catabolism
GO:0016787; hydrolase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL168C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC21C3.09c" ; product "fumarylacetoacetate hydrolase family protein (predicted)" ;
chromosome2 GeneDB mRNA 3031750 3032129 . - . mRNA SPBC15D4.12c ; systematic_id "SPBC15D4.12c" ; colour "8" ; gene "SPBC15D4.12c ||| mug98" ; note "possibly merged to SPBC15D4.13c but can't identify correct splicing" ; Alias "mug98" ; db_xref "SPD:02/02G07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug98" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 715287 716226 . + . mRNA SPBC119.02 ; systematic_id "SPBC119.02" ; colour "2" ; gene "ubc4 ||| SPBC119.02" ; Alias "ubc4" ; db_xref "SPD:32/32A10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12724408; date=20090605 ||| term=orthologous to S. cerevisiae YDR059C and YBR082C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Cdc13; db_xref=PMID:12724408; date=20100825" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0016567; protein ubiquitination
; cyclin catabolism
GO:0004842; ubiquitin conjugating enzyme activity" ; primary_name "ubc4" ; product "ubiquitin conjugating enzyme Ubc4" ; EC_number "6.3.2.19" ;
chromosome2 GeneDB mRNA 4149689 4150785 . + . mRNA SPBC14F5.01 ; systematic_id "SPBC14F5.01" ; colour "8" ; gene "SPBC1861.10 ||| SPBC14F5.01" ; Alias "SPBC1861.10" ; db_xref "SPD:10/10H10" ; synonym "SPBC1861.10" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "SPBC1861.10" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 903061 903775 . - . mRNA SPBC216.04c ; db_xref "SPD:03/03C09" ; systematic_id "SPBC216.04c" ; colour "7" ; GO "GO:0000318; protein-methionine-R-oxide reductase activity
GO:0034599; cellular response to oxidative stress
GO:0044267; cellular protein metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPBC216.04c" ; product "methionine sulfoxide (predicted)" ;
chromosome2 GeneDB mRNA 4000475 4001244 . - . mRNA SPBC3B9.07c ; systematic_id "SPBC3B9.07c" ; colour "2" ; gene "rpa43 ||| rpa21 ||| SPBC3B9.07c" ; Alias "rpa43" ; db_xref "SPD:40/40A05" ; synonym "rpa21" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0005736; DNA-directed RNA polymerase I complex
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR340C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpa43" ; product "DNA-directed RNA polymerase I complex subunit Rpa43" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB mRNA 3976712 3978255 . + . mRNA SPBC26H8.12 ; db_xref "SPD:17/17H01" ; systematic_id "SPBC26H8.12" ; colour "7" ; GO "GO:0005758; mitochondrial intermembrane space
GO:0004408; holocytochrome-c synthase activity
GO:0018063; cytochrome c-heme linkage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL039C; date=19700101 ||| term=disease associated, microphthalmia; date=20080204 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC26H8.12" ; product "cytochrome c heme lyase (predicted)" ;
chromosome2 GeneDB mRNA 2058263 2059156 . - . mRNA SPBC29A3.11c ; db_xref "SPD:12/12C01" ; systematic_id "SPBC29A3.11c" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0046943; carboxylic acid transporter activity
GO:0046942; carboxylic acid transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR130C and YOR100C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=mitochondrial carrier; date=19700101" ; gene "SPBC29A3.11c" ; product "mitochondrial carboxylic acid transporter (predicted)" ;
chromosome2 GeneDB mRNA 3993431 3995465 . + . mRNA SPBC3B9.03 ; db_xref "SPD:26/26E12" ; systematic_id "SPBC3B9.03" ; colour "7" ; GO "GO:0006614; SRP-dependent cotranslational protein targeting to membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005785; signal recognition particle receptor complex
GO:0005047; signal recognition particle binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR292C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC3B9.03" ; product "signal recognition particle receptor alpha subunit Srp101 (predicted)" ;
chromosome2 GeneDB mRNA 938700 940291 . - . mRNA SPBC646.09c ; systematic_id "SPBC646.09c" ; colour "2" ; gene "int6 ||| yin6 ||| SPBC646.09c" ; Alias "int6" ; db_xref "SPD:40/40F02" ; synonym "yin6" ; GO "GO:0005737; cytoplasm
GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030437; ascospore formation
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0071313; cellular response to caffeine
GO:0000070; mitotic sister chromatid segregation
GO:0070196; eIF3 complex assembly
GO:0032436; positive regulation of proteasomal ubiquitin-dependent protein catabolism
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0043248; proteasome assembly
GO:0031144; proteasome localization
GO:0006461; protein complex assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11705997; date=20081211 ||| term=disease associated, cancer; db_xref=PMID:11115556; date=20060106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=complementation, functionally complemented by human INT6; db_xref=PMID:12553909; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sensitive to caffeine; qualifier=deletion; cv=phenotype; date=20081211 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18502752; date=20090110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "int6" ; product "eIF3e subunit Int6" ;
chromosome2 GeneDB mRNA 613481 616561 . - . mRNA SPBC839.08c ; systematic_id "SPBC839.08c" ; colour "2" ; gene "its8 ||| SPBC839.08c" ; Alias "its8" ; db_xref "SPD:47/47F02" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006506; GPI anchor biosynthesis
GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0051377; mannose-ethanolamine phosphotransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060913 ||| term=name description, Immunosuppressant and Temperature Sensitive; cv=name_description; db_xref=PMID:11297516; date=20060913 ||| term=orthologous to S. cerevisiae YKL165C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "its8" ; product "pig-N (predicted)" ;
chromosome2 GeneDB mRNA 2368905 2371583 . - . mRNA SPBC19G7.10c ; db_xref "SPD:29/29B10" ; systematic_id "SPBC19G7.10c" ; colour "7" ; GO "GO:0000932; cytoplasmic mRNA processing body
GO:0000290; deadenylation-dependent decapping
GO:0006446; regulation of translational initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC19G7.10c" ; product "topoisomerase II-associated deadenylation- dependent mRNA-decapping factor (predicted)" ;
chromosome2 GeneDB mRNA 1546226 1549746 . + . mRNA SPBC29B5.01 ; systematic_id "SPBC29B5.01" ; colour "2" ; db_xref "SPD:33/33C12" ; Alias "atf1" ; synonym "mts1 ||| sss1 ||| gad7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bZIP (basic leucine zipper) transcription factor family; evidence=ISS; db_xref=PMID:8824587; date=19700101 ||| term=Atf-CREB subfamily; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=pathway, links stress-activated MAPK (Sty1) pathway to cAMP-dependent protein kinase (Pka1) pathway; db_xref=PMID:15448137; date=20090104 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:7958849; date=20090104 ||| term=subunit composition, heterodimer; cv=subunit_composition; db_xref=PMID:7958849; date=20090104 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:12529438; date=20090110 ||| term=phenotype, defective in recovery of translation after hyperosmotic shock; cv=phenotype; qualifier=deletion; db_xref=PMID:18065650; date=20090210 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target of Sty1 stress-activated MAP kinase pathway; db_xref=PMID:8824587; date=20090826 ||| term=DNA binding specificity, binds CRE 5'-TGACGT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates ntp1; db_xref=PMID:15164362; cv=gene_ex; date=20100302 ||| term=target of Sty1; qualifier=phosphorylated_by; db_xref=PMID:17072883; date=20100825" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0003723; RNA binding
GO:0010843; promoter binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0042803; protein homodimerization activity
GO:0010844; recombination hotspot binding
GO:0043565; sequence-specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000080; G1 phase of mitotic cell cycle
GO:0010846; activation of reciprocal meiotic recombination
GO:0046685; cellular response to arsenic
GO:0070301; cellular response to hydrogen peroxide
GO:0006995; cellular response to nitrogen starvation
GO:0009267; cellular response to starvation
GO:0009267; cellular response to starvation
GO:0031990; mRNA export from nucleus during heat stress
GO:0045128; negative regulation of reciprocal meiotic recombination
GO:0051039; positive regulation of transcription, meiotic
GO:0043949; regulation of cAMP-mediated signaling
GO:0010847; regulation of chromatin assembly
GO:0010848; regulation of chromatin disassembly
GO:0035065; regulation of histone acetylation
GO:0031060; regulation of histone methylation
GO:0010520; regulation of meiotic recombination
GO:0006355; regulation of transcription, DNA- dependent" ; primary_name "atf1" ; product "transcription factor, Atf-CREB family Atf1" ;
chromosome2 GeneDB mRNA 2367117 2368955 . + . mRNA SPBC19G7.09 ; systematic_id "SPBC19G7.09" ; colour "2" ; gene "ulp1 ||| SPBC19G7.09" ; Alias "ulp1" ; db_xref "SPD:35/35E03" ; GO "GO:0016926; protein desumoylation
GO:0006997; nuclear organization and biogenesis
GO:0005634; nucleus
GO:0034399; nuclear periphery
GO:0016929; SUMO-specific protease activity
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:11884512; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:11884512; date=20100727 ||| term=target is Pmt3; db_xref=PMID:11884512; date=19700101 ||| term=orthologous to S. cerevisiae YPL020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "ulp1" ; product "SUMO deconjugating enzyme Ulp1" ;
chromosome2 GeneDB mRNA 417242 419551 . + . mRNA SPBC106.20 ; systematic_id "SPBC106.20" ; colour "2" ; gene "exo70 ||| SPBC106.20 ||| SPBC582.02" ; Alias "exo70" ; db_xref "SPD:37/37F08" ; synonym "SPBC582.02" ; GO "GO:0000145; exocyst
GO:0006887; exocytosis
GO:0006886; intracellular protein transport
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0051285; cell cortex of cell tip
GO:0032153; cell division site" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YJL085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "exo70" ; product "exocyst complex subunit Exo70 (predicted)" ;
chromosome2 GeneDB mRNA 2719029 2720183 . - . mRNA SPBC4F6.15c ; systematic_id "SPBC4F6.15c" ; colour "2" ; gene "swi10 ||| rad23 ||| SPBC4F6.15c" ; Alias "swi10" ; db_xref "SPD:32/32C03" ; synonym "rad23" ; GO "GO:0000109; nucleotide-excision repair complex
GO:0046982; protein heterodimerization activity
GO:0000014; single-stranded DNA specific endodeoxyribonuclease activity
GO:0007534; gene conversion at mating-type locus
GO:0006296; nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0031593; polyubiquitin binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1475195; date=20080115 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|low_penetrance; db_xref=PMID:1485195; date=20100802 ||| term=human ERCC1 ortholog; date=19700101 ||| term=helix-hairpin-helix; date=1970010 1 ||| term=orthologous to S. cerevisiae YML095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complemented by human ERCC1; db_xref=PMID:9207030; date=20101012" ; primary_name "swi10" ; product "DNA repair endonuclease Swi10" ; EC_number "3.1.-.-" ;
chromosome2 GeneDB mRNA 4496373 4496984 . + . mRNA SPBPB2B2.15 ; db_xref "SPD:41/41D08" ; systematic_id "SPBPB2B2.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL258W and YOR387C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBPB2B2.15" ; product "conserved fungal family" ;
chromosome2 GeneDB mRNA 4265244 4267358 . + . mRNA SPBC16A3.17c ; db_xref "SPD:36/36D12" ; systematic_id "SPBC16A3.17c" ; colour "7" ; GO "GO:0016021; integral to membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL069W and YGR224W and YPR198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC16A3.17c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 4164647 4167123 . + . mRNA SPBC14F5.06 ; systematic_id "SPBC14F5.06" ; colour "7" ; db_xref "SPD:46/46F12" ; Alias "rli1" ; GO "GO:0005737; cytoplasm
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0042273; ribosomal large subunit biogenesis
GO:0006413; translational initiation
GO:0051536; iron-sulfur cluster binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rli1" ; product "iron-sulfur ATPase involved in ribosome biogenesis Rli1 (predicted)" ;
chromosome2 GeneDB mRNA 2921241 2923535 . + . mRNA SPBC1703.04 ; systematic_id "SPBC1703.04" ; colour "7" ; gene "mlh1 ||| SPBC1703.04" ; Alias "mlh1" ; db_xref "SPD:28/28C06" ; GO "GO:0006298; mismatch repair
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer, hereditary nonpolyposis colon; date=20060724 ||| term=disease associated, cancer; date=20060724 ||| term=orthologous to S. cerevisiae YMR167W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MLH1 ortholog; date=20100217 ||| term=warning, non-consensus branch site; date=20100805" ; primary_name "mlh1" ; product "MutL family protein Mlh1 (predicted)" ;
chromosome2 GeneDB mRNA 2348108 2349206 . + . mRNA SPBC19G7.02 ; systematic_id "SPBC19G7.02" ; colour "7" ; gene "SPBC19G7.02" ; note "possible N terminal incorrect" ; db_xref "SPD:43/43D03" ; GO "GO:0008696; 4-amino-4-deoxychorismate lyase activity
GO:0008153; para-aminobenzoic acid biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR289W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "4-amino-4-deoxychorismate lyase (predicted)" ;
chromosome2 GeneDB mRNA 2061103 2062182 . - . mRNA SPBC29A3.13 ; systematic_id "SPBC29A3.13" ; colour "2" ; gene "pdp1 ||| SPBC29A3.13" ; Alias "pdp1" ; db_xref "SPD:16/16G08" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0006338; chromatin remodeling
GO:0070510; regulation of histone H4-K20 methylation
GO:0070510; regulation of histone H4-K20 methylation
; DNA damage checkpoint
; DNA damage checkpoint
GO:0034613; cellular protein localization to chromosome
GO:0005515; protein binding
GO:0000077; DNA damage checkpoint
GO:0035064; methylated histone residue binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR455W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, DNA damage checkpoint defects; cv=phenotype; db_xref=PMID:19250904; date=20090316" ; primary_name "pdp1" ; product "PWWP domain protein Pdp1" ;
chromosome2 GeneDB mRNA 2960489 2960729 . + . mRNA SPBC2A9.13 ; db_xref "SPD:01/01B07" ; systematic_id "SPBC2A9.13" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC2A9.13" ; product "sequence orphan" ; note "identified by confirmed intron" ;
chromosome2 GeneDB mRNA 2042507 2043763 . - . mRNA SPBC29A3.03c ; db_xref "SPD:20/20A11" ; systematic_id "SPBC29A3.03c" ; colour "7" ; GO "GO:0034657; GID complex
GO:0005829; cytosol
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0045721; negative regulation of gluconeogenesis
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=CLTH domain; qualifier=inferred from context; date=20060726 ||| term=orthologous to S. cerevisiae YDR255C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC29A3.03c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB mRNA 439188 441992 . - . mRNA SPBC428.01c ; systematic_id "SPBC428.01c" ; colour "2" ; gene "nup107 ||| SPBC582.11c ||| SPBC428.01c" ; Alias "nup107" ; db_xref "SPD:38/38H03" ; synonym "SPBC582.11c" ; GO "GO:0031080; Nup107-160 complex
; nuclear membrane
GO:0005643; nuclear pore
GO:0005643; nuclear pore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006913; nucleocytoplasmic transport
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YDL116W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20031117" ; primary_name "nup107" ; product "nucleoporin Nup107" ;
chromosome2 GeneDB mRNA 4123123 4123729 . - . mRNA SPBC56F2.02 ; systematic_id "SPBC56F2.02" ; colour "2" ; gene "rpl1901 ||| rpl19-1 ||| SPBC56F2.02" ; Alias "rpl1901" ; db_xref "SPD:31/31E11" ; synonym "rpl19-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR084C-A and YBL027W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1901" ; product "60S ribosomal protein L19" ;
chromosome2 GeneDB mRNA 990340 991551 . - . mRNA SPBP35G2.13c ; systematic_id "SPBP35G2.13c" ; colour "2" ; gene "swc2 ||| SPBP35G2.13c" ; db_xref "SPD:13/13D02" ; Alias "swc2" ; GO "GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0006355; regulation of transcription, DNA- dependent
GO:0043486; histone exchange
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR485C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "swc2" ; product "Swr1 complex complex subunit Swc2" ;
chromosome2 GeneDB mRNA 3552055 3552660 . + . mRNA SPBC887.08 ; db_xref "SPD:03/03F05" ; systematic_id "SPBC887.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC887.08" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1304614 1306043 . - . mRNA SPBC30B4.03c ; systematic_id "SPBC30B4.03c" ; colour "7" ; db_xref "SPD:43/43H10" ; Alias "adn1" ; GO "GO:0010811; positive regulation of cell substrate adhesion
GO:0003712; transcription cofactor activity
GO:0006350; transcription" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL233W; date=19700101 ||| term=name description, ADhesioN defective; db_xref=PMID:19542312; date=20090629 ||| term=phenotype, adhesion defects, cell-substrate adhesion, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; date=20090706 ||| term=human LDB1 and LDB2 ortholog; db_xref=Pfam:PF01803; date=20091215 ||| term=species distribution, conserved in Metazoa; db_xref=Pfam:PF01803; date=20091215 ||| term=species distribution, conserved in Vertebrates; db_xref=Pfam:PF01803; date=20091215 ||| term=species distribution, conserved in Fungi; db_xref=Pfam:PF01803; date=20091215 ||| term=species distribution, conserved in Eukaryotes; db_xref=Pfam:PF01803; date=20091215 ||| term=species distribution, conserved in Eukaryotes only; db_xref=Pfam:PF01803; date=20091215" ; primary_name "adn1" ; product "adhesion defective protein, predicted transcriptional regulator (predicted)" ;
chromosome2 GeneDB mRNA 915268 922309 . - . mRNA SPBC216.07c ; systematic_id "SPBC216.07c" ; colour "2" ; gene "tor2 ||| SPBC216.07c ||| SPBC646.01c" ; Alias "tor2" ; db_xref "SPD:34/34C09" ; synonym "SPBC646.01c" ; GO "GO:0031931; TORC 1 complex
GO:0031931; TORC 1 complex
GO:0034064; Tor2-Mei2-Ste11 complex
GO:0005737; cytoplasm
GO:0016303; phosphatidylinositol 3-kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031929; TOR signaling pathway
GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0010507; negative regulation of autophagy
GO:0010503; negative regulation of cell cycle arrest in response to nitrogen starvation
GO:0010503; negative regulation of cell cycle arrest in response to nitrogen starvation
GO:0010503; negative regulation of cell cycle arrest in response to nitrogen starvation
GO:0010515; negative regulation of induction of conjugation with cellular fusion
GO:0031670; cellular response to nutrient
GO:0033554; cellular response to stress
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to rapamycin; residue=L2048S; cv=phenotype; db_xref=PMID:18076573; date=20071228 ||| term=phosphoinositide 3-kinase family protein; date=20071228 ||| term=orthologous to S. cerevisiae YJR066W and YKL203C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14560953; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tor2" ; product "phosphatidylinositol kinase Tor2" ; EC_number "2.7.1.137" ;
chromosome2 GeneDB mRNA 2475933 2480462 . + . mRNA SPBC12C2.02c ; systematic_id "SPBC12C2.02c" ; colour "2" ; gene "ste20 ||| ste16 ||| SPBC12C2.02c" ; note "appears to contain a PF00618 domain below threshold (which is present in S. cerevisiae), but it isn't certain whether this is a GEF as it doesn't appear to have the usually co-occuring PF00617; date=20061012" ; Alias "ste20" ; db_xref "SPD:34/34A11" ; synonym "ste16" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is Rho1; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YER093C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=phenotype, sterile; date=20101013 ||| term=name description, STErile; date=20101013" ; GO "GO:0031932; TORC 2 complex
GO:0007264; small GTPase mediated signal transduction
GO:0031929; TOR signaling pathway
GO:0006995; cellular response to nitrogen starvation
GO:0031137; positive regulation of conjugation with cellular fusion" ; primary_name "ste20" ; product "Rictor homolog, Ste20" ;
chromosome2 GeneDB mRNA 3762925 3764414 . + . mRNA SPBC31F10.07 ; systematic_id "SPBC31F10.07" ; colour "7" ; gene "SPBC31F10.07" ; Alias "lsb5" ; db_xref "SPD:12/12F12" ; GO "GO:0005938; cell cortex
GO:0007015; actin filament organization
GO:0006897; endocytosis
GO:0030479; actin cortical patch" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL034W; date=19700101 ||| term=ENTH/VHS domain protein; date=20080505 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=GAT domain; date=20100908" ; primary_name "lsb5" ; product "cortical component Lsb5 (predicted)" ;
chromosome2 GeneDB mRNA 898075 900981 . + . mRNA SPBC216.02 ; systematic_id "SPBC216.02" ; colour "2" ; gene "mcp5 ||| mug21 ||| num1 ||| SPBC216.02" ; note "meiotically upregulated gene Mug21" ; Alias "mcp5" ; db_xref "SPD:47/47D08" ; synonym "num1 ||| mug21" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16624923; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDR150W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; db_xref=PMID:16303567; cv=name_description; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0030989; horsetail nuclear movement
GO:0030989; horsetail nuclear movement
GO:0007129; synapsis
GO:0045132; meiotic chromosome segregation
GO:0005938; cell cortex
GO:0005938; cell cortex
GO:0032065; cortical protein anchoring
GO:0032065; cortical protein anchoring
GO:0030981; cortical microtubule cytoskeleton
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0051012; microtubule sliding
GO:0043495; protein anchor" ; primary_name "mcp5" ; product "cortical anchoring factor for dynein Mcp5/Num1" ;
chromosome2 GeneDB mRNA 3528795 3529564 . - . mRNA SPBC1105.11c ; Alias "hht3" ; systematic_id "SPBC1105.11c" ; synonym "h3.3" ; colour "2" ; GO "GO:0003677; DNA binding
GO:0006333; chromatin assembly or disassembly
GO:0000788; nuclear nucleosome
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0030702; chromatin silencing at centromere
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0030702; chromatin silencing at centromere
GO:0032015; regulation of Ran protein signal transduction
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR010W and YNL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; residue=S10; cv=pt_mod; date=20090213 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K4|K9; cv=pt_mod; date=20100311 ||| term=target of Hrk1; qualifier=phosphorylated_by; db_xref=PMID:20929775; date=20101115" ; primary_name "hht3" ; product "histone H3 h3.3" ;
chromosome2 GeneDB mRNA 2799716 2801917 . + . mRNA SPBC32F12.09 ; systematic_id "SPBC32F12.09" ; colour "2" ; gene "rum1 ||| SPBC32F12.09" ; Alias "rum1" ; db_xref "SPD:31/31G12" ; GO "GO:0004861; cyclin-dependent protein kinase inhibitor activity
GO:0060630; regulation of M/G1 transition of mitotic cell cycle
GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0000751; cell cycle arrest in response to pheromone
GO:0045736; negative regulation of cyclin- dependent protein kinase activity
GO:0030174; regulation of DNA replication initiation
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=complementation, functionally complemented by S. cerevisiae SIC1; db_xref=PMID:9472012; date=19700101 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=gene expression, expression cell cycle regulated; cv=gene_ex; date=19700101 ||| term=gene expression, regulated by mRNA stability; db_xref=PMID:9614176; cv=gene_ex; date=19700101 ||| term=gene expression, alternative transcripts; cv=gene_ex; date=20090826 ||| term=target of Sty1; qualifier=phosphorylated_form; db_xref=PMID:12135491; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:12135491; date=20090213 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=overexpression; date=20100730" ; primary_name "rum1" ; product "CDK inhibitor Rum1" ;
chromosome2 GeneDB mRNA 1993927 1995997 . + . mRNA SPBC1A4.09 ; db_xref "SPD:27/27F03" ; systematic_id "SPBC1A4.09" ; colour "7" ; GO "GO:0005634; nucleus
GO:0009982; pseudouridine synthase activity
GO:0031119; tRNA pseudouridine synthesis
GO:0031120; snRNA pseudouridine synthesis
GO:0000455; enzyme-directed rRNA pseudouridine synthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR243C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1A4.09" ; product "pseudouridine synthase (predicted)" ;
chromosome2 GeneDB mRNA 755325 756538 . - . mRNA SPBC577.03c ; db_xref "SPD:08/08F02" ; systematic_id "SPBC577.03c" ; colour "10" ; GO "GO:0004042; amino-acid N-acetyltransferase activity
GO:0006474; N-terminal protein amino acid acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC577.03c" ; product "GCN5-related N-acetyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 4069163 4070708 . - . mRNA SPBC1347.05c ; systematic_id "SPBC1347.05c" ; colour "7" ; gene "SPBC1347.05c" ; note "new C-terminal exon 11 Oct 2002" ; db_xref "SPD:19/19D01" ; GO "GO:0030544; Hsp70 protein binding
GO:0030433; ER-associated protein catabolism
GO:0034975; protein folding in the endoplasmic reticulum
GO:0034620; cellular response to unfolded protein
GO:0005788; endoplasmic reticulum lumen" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR214W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; date=20021010" ; product "DNAJ domain protein Scj1 (predicted)" ;
chromosome2 GeneDB mRNA 2676617 2678609 . + . mRNA SPBC3E7.09 ; db_xref "SPD:27/27C05" ; systematic_id "SPBC3E7.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR154W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c1orf9 ortholog; date=20100727" ; GO "GO:0034975; protein folding in the endoplasmic reticulum" ; gene "SPBC3E7.09" ; product "Sad1-UNC-like protein involved protein folding in the ER (predicted)" ;
chromosome2 GeneDB mRNA 3770902 3773160 . - . mRNA SPBC31F10.11c ; systematic_id "SPBC31F10.11c" ; colour "2" ; gene "cwf4 ||| syf3 ||| SPBC31F10.11c" ; Alias "cwf4" ; db_xref "SPD:46/46C09" ; synonym "syf3" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR117C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf4" ; product "complexed with Cdc5 protein Cwf4" ;
chromosome2 GeneDB mRNA 3018179 3019939 . + . mRNA SPBC15D4.04 ; systematic_id "SPBC15D4.04" ; colour "2" ; gene "gpt2 ||| gpt ||| alg7 ||| SPBC15D4.04" ; Alias "gpt2" ; db_xref "SPD:32/32H04" ; synonym "gpt ||| alg7" ; GO "GO:0003975; UDP-N-acetylglucosamine-dolichyl- phosphate N-acetylglucosaminephosphotransferase activity
GO:0003975; UDP-N-acetylglucosamine-dolichyl- phosphate N-acetylglucosaminephosphotransferase activity
GO:0005783; endoplasmic reticulum
GO:0006487; protein amino acid N-linked glycosylation
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR243C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gpt2" ; product "UDP-N-acetylglucosamine--dolichyl-phosphateN-acetylglucosaminephosphotransferase" ; EC_number "2.7.8.15" ;
chromosome2 GeneDB mRNA 3046833 3047540 . + . mRNA SPBC13E7.04 ; systematic_id "SPBC13E7.04" ; colour "7" ; gene "atp16 ||| SPBC13E7.04" ; Alias "atp16" ; db_xref "SPD:04/04E02" ; GO "GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0005756; proton-transporting ATP synthase, central stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp16" ; product "F1-ATPase delta subunit (predicted)" ;
chromosome2 GeneDB mRNA 2997113 3001014 . + . mRNA SPBC2D10.17 ; systematic_id "SPBC2D10.17" ; colour "2" ; gene "clr1 ||| SPBC2D10.17" ; db_xref "SPD:48/48E09" ; Alias "clr1" ; GO "GO:0030466; chromatin silencing at silent mating- type cassette
GO:0016581; NuRD complex
GO:0006342; chromatin silencing
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0005721; centric heterochromatin
GO:0031933; telomeric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0033553; rDNA heterochromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=name description, cryptic loci regulator; cv=name_description; date=20100126" ; primary_name "clr1" ; product "cryptic loci regulator Clr1" ;
chromosome2 GeneDB mRNA 2277215 2279364 . + . mRNA SPBC16H5.11c ; systematic_id "SPBC16H5.11c" ; colour "2" ; gene "skb1 ||| SPBC16H5.11c ||| rmt5" ; Alias "skb1" ; db_xref "SPD:33/33F07" ; synonym "rmt5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11278267; date=19700101 ||| term=orthologous to S. cerevisiae YBR133C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Shk1 Kinase Binding protein; cv=name_description; date=20100317 ||| term=human PRMT5 ortholog; date=20100908 ||| term=phenotype, cell morphology, small cells; db_xref=PMID:9843966; date=20101207" ; GO "GO:0051286; cell tip
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0016274; protein-arginine N-methyltransferase activity
GO:0034613; cellular protein localization
GO:2000100; establishment and/or maintenance of bipolar cell polarity during cell shaping
GO:0045930; negative regulation of mitotic cell cycle
GO:0035246; peptidyl-arginine N-methylation
GO:0047484; cellular response to osmotic stress" ; primary_name "skb1" ; product "type II protein arginine N-methyltransferase Skb1" ; EC_number "2.1.1.-" ;
chromosome2 GeneDB mRNA 4412376 4413350 . + . mRNA SPBC1289.14 ; systematic_id "SPBC1289.14" ; colour "7" ; gene "SPBC1289.14 ||| SPBC8E4.10c" ; db_xref "SPD:14/14A03" ; synonym "SPBC8E4.10c" ; GO "GO:0005856; cytoskeleton
GO:0007010; cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "adducin (predicted)" ;
chromosome2 GeneDB mRNA 4008064 4008787 . + . mRNA SPBC3B9.12 ; systematic_id "SPBC3B9.12" ; colour "7" ; gene "SPBC3B9.12" ; Alias "trs23" ; db_xref "SPD:42/42D05" ; GO "GO:0030008; TRAPP complex
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR246W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TRAPPC4 ortholog; date=20090914" ; primary_name "trs23" ; product "TRAPP complex subunit Trs23 (predicted)" ;
chromosome2 GeneDB mRNA 2778923 2779856 . + . mRNA SPBC685.06 ; systematic_id "SPBC685.06" ; colour "2" ; gene "rps001 ||| rps0-1 ||| rpsa-1 ||| rps0 ||| SPBC685.06" ; Alias "rps001" ; db_xref "SPD:13/13A11" ; synonym "rps0-1 ||| rpsa-1 ||| rps0" ; GO "GO:0042274; ribosomal small subunit biogenesis
GO:0006412; translation
GO:0015935; small ribosomal subunit
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR214W and YLR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps001" ; product "40S ribosomal protein S0A (p40)" ;
chromosome2 GeneDB mRNA 1836327 1838318 . + . mRNA SPBC28E12.02 ; systematic_id "SPBC28E12.02" ; colour "10" ; gene "SPBC9B6.13 ||| SPBC28E12.02" ; Alias "SPBC9B6.13" ; db_xref "SPD:27/27D02" ; synonym "SPBC9B6.13" ; GO "GO:0005737; cytoplasm
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=KH domain; date=19700101 ||| term=orthologous to S. cerevisiae YLL032C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPBC9B6.13" ; product "RNA-binding protein" ;
chromosome2 GeneDB mRNA 3548811 3549913 . - . mRNA SPBC887.05c ; systematic_id "SPBC887.05c" ; colour "2" ; gene "cwf29 ||| SPBC887.05c" ; Alias "cwf29" ; db_xref "SPD:43/43A12" ; GO "GO:0005686; snRNP U2
GO:0000245; spliceosome assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YIR005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cwf29" ; product "RNA-binding protein Cwf29" ;
chromosome2 GeneDB mRNA 4081874 4083139 . + . mRNA SPBC1347.11 ; systematic_id "SPBC1347.11" ; colour "2" ; db_xref "SPD:01/01F12" ; Alias "sro1" ; GO "GO:0005739; mitochondrion
GO:0045454; cell redox homeostasis
GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; db_xref=PMID:18410345; date=19700101 ||| term=target of SAPK pathway; db_xref=PMID:18410345; date=20080416 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:18410345; cv=gene_ex; date=20080416 ||| term=target of Pka1; qualifier=predicted; db_xref=PMID:18410345; date=20080416 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18410345; date=20080416 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, Stress Responsive Orphan; db_xref=PMID:18410345; cv=name_description; date=20100123" ; primary_name "sro1" ; product "stress responsive orphan 1" ;
chromosome2 GeneDB mRNA 269676 270226 . - . mRNA SPBC800.14c ; db_xref "SPD:51/51H11" ; systematic_id "SPBC800.14c" ; controlled_curation "term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; cv=phenotype; db_xref=PMID:20519959; date=20100611" ; colour "10" ; gene "SPBC800.14c" ; product "DUF1772 family protein" ;
chromosome2 GeneDB mRNA 1056510 1057442 . - . mRNA SPBC337.15c ; systematic_id "SPBC337.15c" ; colour "2" ; gene "coq7 ||| SPBC337.15c" ; Alias "coq7" ; db_xref "SPD:07/07E06" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006744; ubiquinone biosynthesis
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR125C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "coq7" ; product "ubiquinone biosynthesis protein Coq7" ;
chromosome2 GeneDB mRNA 1734252 1738268 . + . mRNA SPBC2F12.03c ; db_xref "SPD:38/38H08" ; systematic_id "SPBC2F12.03c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100909 ||| term=warning, gene structure may be incorrect; date=20100927" ; colour "10" ; gene "SPBC2F12.03c" ; product "EST1 family protein (predicted)" ;
chromosome2 GeneDB mRNA 2218181 2219221 . - . mRNA SPBC14C8.19 ; Alias "tam10" ; systematic_id "SPBC14C8.19" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "tam10" ; gene "SPBC14C8.19" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 390953 395735 . + . mRNA SPBC106.09 ; systematic_id "SPBC106.09" ; colour "2" ; gene "cut4 ||| apc1 ||| SPBC106.09" ; Alias "cut4" ; db_xref "SPD:48/48G04" ; synonym "apc1" ; GO "GO:0008054; cyclin catabolism
GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YNL172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118" ; primary_name "cut4" ; product "anaphase-promoting complex subunit Apc1" ;
chromosome2 GeneDB mRNA 429183 430166 . - . mRNA SPBC582.06c ; systematic_id "SPBC582.06c" ; colour "2" ; gene "mcp6 ||| hrs1 ||| SPBC582.06c ||| mug3" ; Alias "mcp6" ; db_xref "SPD:14/14C04" ; synonym "hrs1 ||| mug3" ; GO "GO:0032117; horsetail-astral microtubule array
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005816; spindle pole body
GO:0042802; identical protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030953; astral microtubule organization and biogenesis
GO:0034613; cellular protein localization
GO:0030989; horsetail nuclear movement
GO:0032118; horsetail-astral microtubule organization and biogenesis
GO:0007131; meiotic recombination
GO:0007097; nuclear migration
GO:0007129; synapsis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=20060517 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:15654021; date=20060517 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=20060517 ||| term=name description, horsetail movement protein Hrs1; cv=name_description; db_xref=PMID:16111942; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=20090727" ; primary_name "mcp6" ; product "horsetail movement protein Hrs1/Mcp6" ;
chromosome2 GeneDB mRNA 2463134 2464265 . + . mRNA SPBC12C2.07c ; db_xref "SPD:12/12C04" ; systematic_id "SPBC12C2.07c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR069C and YLR146C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008295; spermidine biosynthesis
GO:0015940; pantothenate biosynthesis
GO:0004766; spermidine synthase activity" ; gene "SPBC12C2.07c" ; product "spermidine synthase (predicted)" ; EC_number "2.5.1.16" ;
chromosome2 GeneDB mRNA 1245982 1247084 . - . mRNA SPBC651.05c ; systematic_id "SPBC651.05c" ; colour "2" ; db_xref "SPD:10/10E05" ; Alias "dot2" ; synonym "vps22" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Defective Organization of Telomeres; cv=name_description; db_xref=PMID:11901107; date=20090817" ; GO "GO:0000814; ESCRT II complex
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0007127; meiosis I
GO:0051300; spindle pole body organization
GO:0045141; telomere clustering
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport" ; primary_name "dot2" ; product "EAP30 family protein Dot2" ;
chromosome2 GeneDB mRNA 2849544 2850810 . - . mRNA SPBP19A11.02c ; db_xref "SPD:50/50A11" ; systematic_id "SPBP19A11.02c" ; colour "8" ; GO "GO:0009897; external side of plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; gene "SPBP19A11.02c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1792384 1792886 . + . mRNA SPBC18H10.13 ; systematic_id "SPBC18H10.13" ; colour "7" ; gene "rps1402 ||| rps14-2 ||| SPBC18H10.13" ; Alias "rps1402" ; db_xref "SPD:03/03D02" ; synonym "rps14-2" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR031C and YJL191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps1402" ; product "40S ribosomal protein S14 (predicted)" ;
chromosome2 GeneDB mRNA 239922 243608 . - . mRNA SPBC31E1.02c ; systematic_id "SPBC31E1.02c" ; colour "2" ; gene "pmr1 ||| SPBC31E1.02c" ; Alias "pmr1" ; obsolete_name "pgak2" ; db_xref "SPD:33/33H08" ; GO "GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0005524; ATP binding
GO:0005509; calcium ion binding
GO:0005388; calcium-transporting ATPase activity
GO:0030145; manganese ion binding
GO:0015410; manganese-transporting ATPase activity
GO:0006874; calcium ion homeostasis
GO:0031505; cell wall organization and biogenesis
GO:0033205; cell cycle cytokinesis
GO:0030026; manganese ion homeostasis
GO:0071421; manganese ion transmembrane transport
GO:0050850; positive regulation of calcium- mediated signaling
GO:0006486; protein amino acid glycosylation
GO:0070588; transmembrane calcium ion transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, lemon shaped; db_xref=PMID:15470240; date=20100831 ||| term=disease associated, Hailey- Hailey disease; date=20061010 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL167C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "pmr1" ; product "P-type ATPase, calcium transporting Pmr1" ; EC_number "3.6.3.8" ;
chromosome2 GeneDB mRNA 4287241 4288894 . - . mRNA SPBC16A3.06 ; db_xref "SPD:22/22G05" ; systematic_id "SPBC16A3.06" ; colour "7" ; GO "GO:0008251; tRNA specific adenosine deaminase activity
GO:0006400; tRNA modification
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL243W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC16A3.06" ; product "tRNA specific adenosine deaminase (predicted)" ;
chromosome2 GeneDB mRNA 3996512 3997390 . + . mRNA SPBC3B9.21 ; systematic_id "SPBC3B9.21" ; colour "2" ; gene "dcp1 ||| SPBC3B9.21" ; Alias "dcp1" ; db_xref "SPD:07/07D05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15671491; date=19700101 ||| term=orthologous to S. cerevisiae YOL149W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000932; cytoplasmic mRNA processing body
GO:0005845; mRNA cap complex
GO:0005845; mRNA cap complex
GO:0000340; RNA 7-methylguanosine cap binding
GO:0030234; enzyme regulator activity
GO:0050072; m7G(5')pppN diphosphatase activity
GO:0050072; m7G(5')pppN diphosphatase activity
GO:0005515; protein binding
GO:0000290; deadenylation-dependent decapping
GO:0031087; deadenylation-independent decapping
GO:0000184; mRNA catabolism, nonsense-mediated decay" ; primary_name "dcp1" ; product "mRNA decapping complex regulatory subunit Dcp1" ; EC_number "3.6.1.30" ;
chromosome2 GeneDB mRNA 2194994 2196024 . - . mRNA SPBC17G9.12c ; db_xref "SPD:10/10F09" ; systematic_id "SPBC17G9.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR015C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC17G9.12c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 2873970 2875999 . + . mRNA SPBP4H10.04 ; systematic_id "SPBP4H10.04" ; colour "2" ; gene "ppb1 ||| SPBP4H10.04" ; Alias "ppb1" ; obsolete_name "SPBC1346.01c" ; db_xref "SPD:33/33E08" ; GO "GO:0005955; calcineurin complex
GO:0004721; calcium-dependent protein serine/threonine phosphatase activity
GO:0019722; calcium-mediated signaling
GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0030644; chloride ion homeostasis
GO:0031137; regulation of conjugation with cellular fusion
GO:0071775; regulation of cell cycle cytokinesis
GO:0071775; regulation of cell cycle cytokinesis
GO:0032878; regulation of establishment and/or maintenance of cell polarity
GO:0006470; protein amino acid dephosphorylation
GO:0070631; spindle pole body localization" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=20060913 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=20060913 ||| term=PPP3/PP2B/calcineurin subfamily; cv=protein_family; date=20060913 ||| term=orthologous to S. cerevisiae YML057W and YLR433C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Prz1; date=20090817 ||| term=phenotype, cell morphology, branched; db_xref=PMID:7983142; date=20100918" ; primary_name "ppb1" ; product "calcium-dependent serine/threonine protein phosphatase calcineurin, catalytic subunit Ppb1" ; EC_number "3.1.3.16" ;
chromosome2 GeneDB mRNA 2433110 2433482 . - . mRNA SPBC21D10.07 ; systematic_id "SPBC21D10.07" ; colour "7" ; gene "SPBC21D10.07 ||| cmc1" ; Alias "cmc1" ; db_xref "SPD:02/02F04" ; GO "GO:0031314; extrinsic to mitochondrial inner membrane
GO:0005507; copper ion binding
GO:0033617; mitochondrial respiratory chain complex IV assembly
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL059C-A and YKL137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cmc1" ; product "mitochondrial inner membrane protein involved in cytochrome oxidase biogenesis Cmc1 (predicted)" ;
chromosome2 GeneDB mRNA 1520988 1523628 . + . mRNA SPBC83.07 ; systematic_id "SPBC83.07" ; colour "2" ; gene "jmj3 ||| ecm5 ||| SPBC83.07" ; Alias "jmj3" ; db_xref "SPD:28/28C08" ; synonym "kdm4" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=jmjC domain; date=20061206 ||| term=zinc finger protein; date=20061206 ||| term=orthologous to S. cerevisiae YER169W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0048189; Lid2 complex
GO:0000790; nuclear chromatin
GO:0051864; histone demethylase activity (H3-K36 specific)
GO:0016566; specific transcriptional repressor activity
GO:0006338; chromatin remodeling
GO:0016577; histone demethylation
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "jmj3" ; product "Lid2 complex subunit, histone demethylase H3-K36 specific Jmj3" ;
chromosome2 GeneDB mRNA 934516 935618 . - . mRNA SPBC646.07c ; db_xref "SPD:12/12A09" ; systematic_id "SPBC646.07c" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005789; endoplasmic reticulum membrane
GO:0000038; very-long-chain fatty acid metabolism
GO:0030497; fatty acid elongation
GO:0016631; enoyl-[acyl-carrier-protein] reductase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL015C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC646.07c" ; product "enoyl reductase (predicted)" ;
chromosome2 GeneDB mRNA 2812148 2813190 . - . mRNA SPBC19C7.01 ; systematic_id "SPBC19C7.01" ; colour "7" ; gene "SPBC32F12.13c ||| SPBC19C7.01" ; note "N-terminal splicing uncertain; 1st exon possibly at 441..466" ; Alias "SPBC32F12.13c" ; db_xref "SPD:07/07D01" ; synonym "SPBC32F12.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human WIBG ortholog; date=20080728 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "SPBC32F12.13c" ; product "Mago binding protein homolog (predicted)" ;
chromosome2 GeneDB mRNA 3612339 3615254 . - . mRNA SPBC16D10.08c ; db_xref "SPD:47/47B05" ; systematic_id "SPBC16D10.08c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0051085; chaperone cofactor-dependent protein folding
GO:0033554; cellular response to stress
GO:0051087; chaperone binding
GO:0042623; ATPase activity, coupled
GO:0031072; heat shock protein binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YLL026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC16D10.08c" ; product "heat shock protein Hsp104 (predicted)" ;
chromosome2 GeneDB mRNA 4478919 4480162 . - . mRNA SPBPB2B2.09c ; db_xref "SPD:49/49A04" ; systematic_id "SPBPB2B2.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR063C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0008677; 2-dehydropantoate 2-reductase activity
GO:0015940; pantothenate biosynthesis
GO:0005737; cytoplasm" ; gene "SPBPB2B2.09c" ; product "2-dehydropantoate 2-reductase (predicted)" ; EC_number "1.1.1.169" ;
chromosome2 GeneDB mRNA 2931660 2932535 . + . mRNA SPBC1703.09 ; db_xref "SPD:42/42G03" ; systematic_id "SPBC1703.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC1703.09" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2162113 2162211 . - . mRNA SPBC1711.15c ; db_xref "SPD:01/01A01" ; systematic_id "SPBC1711.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20091213" ; colour "8" ; gene "SPBC1711.15c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2978736 2979469 . - . mRNA SPBC2D10.07c ; db_xref "SPD:05/05H09" ; systematic_id "SPBC2D10.07c" ; colour "7" ; GO "GO:0042720; mitochondrial inner membrane peptidase complex
GO:0004222; metalloendopeptidase activity
GO:0008236; serine-type peptidase activity
GO:0006627; mitochondrial protein processing
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR150C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC2D10.07c" ; product "mitochondrial inner membrane peptidase complex catalytic subunit (predicted)" ;
chromosome2 GeneDB mRNA 380228 383253 . + . mRNA SPBC106.04 ; systematic_id "SPBC106.04" ; colour "2" ; gene "ada1 ||| SPBC106.04" ; Alias "ada1" ; db_xref "SPD:22/22G11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YML035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0003876; AMP deaminase activity
GO:0006188; IMP biosynthesis" ; primary_name "ada1" ; product "adenosine deaminase Ada1 (predicted)" ; EC_number "3.5.4.6" ;
chromosome2 GeneDB mRNA 182665 184592 . - . mRNA SPBC1198.06c ; db_xref "SPD:21/21F07" ; systematic_id "SPBC1198.06c" ; colour "7" ; GO "GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0031362; anchored to external side of plasma membrane
GO:0051692; cellular oligosaccharide catabolism
GO:0008496; mannan endo-1,6-alpha-mannosidase activity
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL046C and YMR238W; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; gene "SPBC1198.06c" ; product "mannan endo-1,6-alpha-mannosidase (predicted)" ;
chromosome2 GeneDB mRNA 118252 119803 . - . mRNA SPBC359.04c ; db_xref "SPD:16/16F07" ; systematic_id "SPBC359.04c" ; colour "12" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAC186.01 and SPBC947.04; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=DIPSY domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; evidence=ISS: qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; gene "SPBC359.04c" ; product "cell surface glycoprotein (predicted), DIPSY family" ;
chromosome2 GeneDB mRNA 2396233 2401454 . + . mRNA SPBC36B7.09 ; systematic_id "SPBC36B7.09" ; colour "2" ; db_xref "SPD:50/50B01" ; Alias "gcn2" ; synonym "ppk28 ||| SPBP18G5.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RWD domain; date=19700101 ||| term=orthologous to S. cerevisiae YDR283C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18502752; date=20090110 ||| term=target is Tif211; qualifier=phosphorylates; residue=Ser52; evidence=IDA; db_xref=PMID:19033384; date=20091204" ; GO "GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0005524; ATP binding
GO:0004694; eukaryotic translation initiation factor 2alpha kinase activity
GO:0042803; protein homodimerization activity
GO:0006468; protein amino acid phosphorylation
GO:0043561; regulation of translational initiation in response to osmotic stress
GO:0031575; G1/S transition checkpoint
GO:0071263; negative regulation of translational initiation in response to nutrient starvation" ; primary_name "gcn2" ; product "eIF2 alpha kinase Gcn2" ;
chromosome2 GeneDB mRNA 1533249 1534551 . + . mRNA SPBC83.13 ; db_xref "SPD:43/43E04" ; systematic_id "SPBC83.13" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006842; tricarboxylic acid transport
GO:0005371; tricarboxylate carrier activity
GO:0003677; DNA binding
GO:0000002; mitochondrial genome maintenance
GO:0042645; mitochondrial nucleoid" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YMR241W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC83.13" ; product "mitochondrial tricarboxylic acid transporter (predicted)" ;
chromosome2 GeneDB mRNA 1219416 1221515 . + . mRNA SPBC725.08 ; db_xref "SPD:27/27D09" ; systematic_id "SPBC725.08" ; colour "7" ; GO "GO:0031048; small RNA-mediated chromatin silencing" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC725.08" ; product "zf-C2H2 type zinc finger protein, implicated in RNAi (predicted)" ;
chromosome2 GeneDB mRNA 3509703 3510054 . - . mRNA SPBC1105.19 ; Alias "tam12" ; systematic_id "SPBC1105.19" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "tam12" ; gene "SPBC1105.19" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3960105 3961100 . - . mRNA SPBC26H8.13c ; db_xref "SPD:04/04B01" ; systematic_id "SPBC26H8.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Eukaryotes; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20091106 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106" ; colour "10" ; gene "SPBC26H8.13c" ; product "Siva family protein (predicted)" ;
chromosome2 GeneDB mRNA 700291 700700 . + . mRNA SPBPJ4664.03 ; Alias "mfm3" ; systematic_id "SPBPJ4664.03" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=name description, M-factor precursor; cv=name_description; date=20090729" ; GO "GO:0032005; signal transduction during conjugation with cellular fusion
GO:0000772; mating pheromone activity" ; gene "mfm3 ||| SPBPJ4664.03" ; primary_name "mfm3" ; product "M-factor precursor Mfm3" ;
chromosome2 GeneDB mRNA 4253280 4254440 . + . mRNA SPBC1652.01 ; db_xref "SPD:18/18D01" ; systematic_id "SPBC1652.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR169C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0000432; positive regulation of transcription from RNA polymerase II promoter by glucose
GO:0043565; sequence-specific DNA binding
GO:0005634; nucleus
GO:0032569; gene-specific transcription from RNA polymerase II promoter" ; colour "7" ; gene "SPBC1652.01" ; product "ribosomal RNA processing element (RRPE)-binding protein (predicted)" ;
chromosome2 GeneDB mRNA 3928201 3930732 . + . mRNA SPBC1604.02c ; db_xref "SPD:27/27H02" ; systematic_id "SPBC1604.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; colour "8" ; gene "SPBC1604.02c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3914671 3915719 . + . mRNA SPBC1604.09c ; db_xref "SPD:11/11D02" ; systematic_id "SPBC1604.09c" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0005634; nucleus
GO:0008408; 3'-5' exonuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL080C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1604.09c" ; product "exoribonuclease Rex4 (predicted)" ;
chromosome2 GeneDB mRNA 2040828 2042203 . - . mRNA SPBC29A3.02c ; systematic_id "SPBC29A3.02c" ; colour "2" ; gene "his7 ||| SPBC29A3.02c" ; note "similarity to YCL030C is at the N-term, S. pombe his2 is similar to YCL030C at the C-term" ; Alias "his7" ; db_xref "SPD:32/32G01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL030C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000105; histidine biosynthesis
GO:0004635; phosphoribosyl-AMP cyclohydrolase activity
GO:0004636; phosphoribosyl-ATP diphosphatase activity" ; primary_name "his7" ; product "phosphoribosyl-AMP cyclohydrolase/phosphoribosyl- ATP pyrophosphohydrolase His7" ; EC_number "3.5.4.19 ||| 3.6.1.31" ;
chromosome2 GeneDB mRNA 1064319 1066408 . + . mRNA SPBC1734.03 ; systematic_id "SPBC1734.03" ; colour "7" ; gene "SPBC1734.03 ||| SPBC337.19" ; db_xref "SPD:37/37C06" ; synonym "SPBC337.19" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0004150; dihydroneopterin aldolase activity
GO:0004156; dihydropteroate synthase activity
GO:0003848; 2-amino-4-hydroxy-6- hydroxymethyldihydro pteridinediphosphokin aseactivity
GO:0009396; folic acid and derivative biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, trifunctional enzyme; cv=cat_act; date=19700101 ||| term=orthologous to S. cerevisiae YNL256W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; product "dihydropteroatesynthase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridinediphosphokinase/ dihydroneopterin aldolase (predicted)" ; EC_number "2.5.1.15 ||| 2.7.6.3 ||| 4.1.2.25" ;
chromosome2 GeneDB mRNA 3695055 3697694 . - . mRNA SPBP8B7.30c ; systematic_id "SPBP8B7.30c" ; colour "2" ; gene "SPBP8B7.30c ||| thi5" ; Alias "thi5" ; db_xref "SPD:38/38D11" ; GO "GO:0005634; nucleus
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0008270; zinc ion binding
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0034307; regulation of ascospore formation
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0006355; regulation of transcription, DNA- dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20060503 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=20060503 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060503 ||| term=misc functional group, membrane- tethered transcription factor; qualifier=predicted; db_xref=PMID:11790253; cv=m_f_g; date=20060503 ||| term=protein sequence feature, NLS; cv=sequence_feature; date=20060503 ||| term=gene expression, transcriptionally regulates nmt1; db_xref=PMID:16874521; cv=gene_ex; date=20060804 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPAC3C7.04 and SPAC1486.10 and SPCC417.09C; date=19700101 ||| term=gene expression, transcriptionally regulates genes involved in thiamin biosynthesis; cv=gene_ex; date=20071202 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "thi5" ; product "transcription factor Thi5" ;
chromosome2 GeneDB mRNA 529002 532028 . - . mRNA SPBC1685.14c ; db_xref "SPD:29/29C04" ; systematic_id "SPBC1685.14c" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YNL212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC1685.14c" ; product "Vid27 family protein" ;
chromosome2 GeneDB mRNA 3665799 3667725 . - . mRNA SPBP8B7.17c ; db_xref "SPD:24/24F08" ; systematic_id "SPBP8B7.17c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TENA/THI domain; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPR121W and YPL258C and YOL055C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBP8B7.17c" ; product "TENA/THI family protein" ;
chromosome2 GeneDB mRNA 3737574 3738785 . + . mRNA SPBC13G1.07 ; db_xref "SPD:43/43G02" ; systematic_id "SPBC13G1.07" ; colour "7" ; GO "GO:0018345; protein amino acid palmitoylation
GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-DHHC type; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC13G1.07" ; product "palmitoyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 1076141 1077297 . + . mRNA SPBC1734.09 ; db_xref "SPD:13/13D03" ; systematic_id "SPBC1734.09" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0005462; UDP-N-acetylglucosamine transporter activity
GO:0015788; UDP-N-acetylglucosamine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1734.09" ; product "NST UDP-N-acetylglucosamine transporter (predicted)" ;
chromosome2 GeneDB mRNA 187395 189048 . + . mRNA SPBC1198.08 ; db_xref "SPD:45/45A05" ; systematic_id "SPBC1198.08" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0070573; metallodipeptidase activity
GO:0006751; glutathione catabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPBC1198.08" ; product "dipeptidase Dug1 (predicted)" ;
chromosome2 GeneDB mRNA 198099 199414 . - . mRNA SPBC1198.14c ; systematic_id "SPBC1198.14c" ; colour "2" ; gene "SPBC1198.14c ||| fbp1 ||| SPBC660.04c" ; Alias "fbp1" ; db_xref "SPD:40/40C06" ; synonym "SPBC660.04c" ; GO "GO:0044262; cellular carbohydrate metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR377C; date=19700101 ||| term=gene expression, transcriptionally repressed by cAMP signaling pathway; db_xref=PMID:1849107; cv=gene_ex; date=20070704 ||| term=gene expression, transcriptionally regulated by Cyr1; qualifier=indirect|activated_form; db_xref=PMID:8001792; cv=gene_ex; date=20070704 ||| term=gene expression, transcriptionally regulated by Gpa2; qualifier=indirect; db_xref=PMID:8001792; cv=gene_ex; date=20070704 ||| term=gene expression, transcriptionally regulated by Tup11; cv=gene_ex; db_xref=PMID:11238405; date=20070704 ||| term=gene expression, transcriptionally regulated by Tup12; cv=gene_ex; db_xref=PMID:11238405; date=20070704 ||| term=gene expression, transcriptionally regulated by CCAAT complex; db_xref=PMID:11238405; cv=gene_ex; date=20070704 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fbp1" ; product "fructose-1,6-bisphosphatase Fbp1" ;
chromosome2 GeneDB mRNA 3911759 3912530 . - . mRNA SPBC1604.11 ; systematic_id "SPBC1604.11" ; colour "7" ; gene "atp17 ||| SPBC1604.11" ; Alias "atp17" ; db_xref "SPD:02/02B01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR377W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0016021; integral to membrane
GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; primary_name "atp17" ; product "F0-ATPase subunit F (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB mRNA 1704337 1705527 . + . mRNA SPBC2F12.15c ; db_xref "SPD:16/16C06" ; systematic_id "SPBC2F12.15c" ; colour "7" ; GO "GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0042144; vacuole fusion, non-autophagic
GO:0018345; protein amino acid palmitoylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-DHHC type; date=19700101 ||| term=orthologous to S. cerevisiae YNL326C and YDR459C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC2F12.15c" ; product "palmitoyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 603666 604920 . - . mRNA SPBC839.19 ; Alias "new20" ; systematic_id "SPBC839.19" ; controlled_curation "term=conserved in Eukaryotes; date=20100420 ||| term=conserved in Eukaryotes only; date=20100420 ||| term=conserved in Vertebrates; date=20100420 ||| term=conserved in Metazoa; date=20100420 ||| term=conserved in Fungi; date=20100420 ||| term=no apparent S. cerevisiae ortholog; date=20100420 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "10" ; primary_name "new20" ; product "conserved eukaryotic protein" ;
chromosome2 GeneDB mRNA 3427180 3429424 . + . mRNA SPBC4B4.08 ; systematic_id "SPBC4B4.08" ; colour "2" ; gene "ght2 ||| SPBC4B4.08" ; Alias "ght2" ; db_xref "SPD:40/40F03" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "ght2" ; product "hexose transporter Ght2" ;
chromosome2 GeneDB mRNA 647085 649011 . - . mRNA SPBC947.12 ; systematic_id "SPBC947.12" ; colour "2" ; gene "kms2 ||| SPBC947.12" ; Alias "kms2" ; db_xref "SPD:23/23H09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0034993; SUN-KASH complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=KASH domain protein; qualifier=predicted; date=20091127 ||| term=name description, Karyogamy Meiotic Segregation protein; cv=name_description; date=20091127" ; primary_name "kms2" ; product "spindle pole body protein Kms2" ;
chromosome2 GeneDB mRNA 296131 297178 . - . mRNA SPBC1773.07c ; systematic_id "SPBC1773.07c" ; colour "2" ; db_xref "SPD:12/12G04" ; Alias "sbp1" ; synonym "yrb1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Spy1; db_xref=PMID:17072883; date=20100825" ; GO "GO:0005525; GTP binding
GO:0006405; RNA export from nucleus
GO:0031291; Ran protein signal transduction
GO:0006606; protein import into nucleus" ; primary_name "sbp1" ; product "Ran GTPase binding protein Sbp1" ;
chromosome2 GeneDB mRNA 2554009 2555531 . + . mRNA SPBC29A10.08 ; systematic_id "SPBC29A10.08" ; colour "7" ; gene "SPBC29A10.08 ||| gas2" ; Alias "gas2" ; db_xref "SPD:51/51D07" ; GO "GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005886; plasma membrane
GO:0042124; 1,3-beta-glucanosyltransferase activity
GO:0031505; cell wall organization and biogenesis
GO:0071966; fungal-type cell wall polysaccharide biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR343W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104" ; primary_name "gas2" ; product "1,3-beta-glucanosyltransferase Gas2 (predicted)" ;
chromosome2 GeneDB mRNA 3819083 3822056 . - . mRNA SPBC21C3.14c ; db_xref "SPD:29/29C03" ; systematic_id "SPBC21C3.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC21C3.14c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3181906 3183621 . + . mRNA SPBC776.05 ; db_xref "SPD:24/24F03" ; systematic_id "SPBC776.05" ; colour "7" ; GO "GO:0016020; membrane
GO:0015144; carbohydrate transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR149W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC776.05" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 1918006 1920373 . - . mRNA SPBC16E9.02c ; db_xref "SPD:27/27E03" ; systematic_id "SPBC16E9.02c" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0043130; ubiquitin binding
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CUE domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR042W and YDR273W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC16E9.02c" ; product "CUE domain protein" ;
chromosome2 GeneDB mRNA 4301185 4302696 . - . mRNA SPBC543.02c ; db_xref "SPD:33/33A05" ; systematic_id "SPBC543.02c" ; colour "10" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPBC543.02c" ; product "DNAJ/TPR domain protein DNAJC7 family" ;
chromosome2 GeneDB mRNA 202302 203565 . + . mRNA SPBC660.05 ; db_xref "SPD:03/03E12" ; systematic_id "SPBC660.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=orthologous to S. cerevisiae YFL010C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=genome organization, tandem duplication; cv=genome_org; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC660.05" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 209920 211172 . + . mRNA SPBC660.08 ; db_xref "SPD:18/18H09" ; systematic_id "SPBC660.08" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC660.08 ||| mug167" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3827159 3828960 . + . mRNA SPBC21C3.18 ; systematic_id "SPBC21C3.18" ; colour "2" ; gene "spo4 ||| SPBC21C3.18" ; Alias "spo4" ; db_xref "SPD:40/40F07" ; GO "GO:0090307; spindle assembly involved in mitosis
GO:0030437; sporulation (sensu Fungi)
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDL017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "spo4" ; product "serine/threonine protein kinase Spo4" ;
chromosome2 GeneDB mRNA 3491819 3496777 . + . mRNA SPBPB7E8.01 ; systematic_id "SPBPB7E8.01" ; colour "8" ; gene "SPBPB7E8.01" ; note "low similarity to metallopeptidases" ; db_xref "SPD:49/49B04" ; GO "GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3375459 3377375 . - . mRNA SPBC3B8.09 ; db_xref "SPD:36/36D04" ; systematic_id "SPBC3B8.09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL153C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; colour "7" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005634; nucleus
GO:0030515; snoRNA binding" ; gene "SPBC3B8.09" ; product "U3 snoRNP-associated protein Utp3 (predicted)" ;
chromosome2 GeneDB mRNA 3173165 3175309 . - . mRNA SPBC776.02c ; systematic_id "SPBC776.02c" ; colour "2" ; db_xref "SPD:40/40E03" ; Alias "dis2" ; synonym "sds1 ||| bws1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER133W; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; residue=THR316; qualifier=in_vitro; cv=pt_mod; db_xref=PMID:7957097; date=20090213 ||| term=target of Cdc2; qualifier=phosphorylated_by; date=20100128 ||| term=target is Chk1; qualifier=dephosphorylates|inhibits; db_xref=PMID:14765108; date=20100415" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0004721; phosphoprotein phosphatase activity
GO:0000077; DNA damage checkpoint
GO:0060629; regulation of homologous chromosome segregation
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0033047; regulation of mitotic sister chromatid segregation
GO:0006470; protein amino acid dephosphorylation
GO:0007346; regulation of progression through mitotic cell cycle
GO:0006364; rRNA processing" ; primary_name "dis2" ; product "serine/threonine protein phosphatase PP1" ; EC_number "3.1.3.16" ;
chromosome2 GeneDB mRNA 1313231 1316183 . + . mRNA SPBC30B4.05 ; systematic_id "SPBC30B4.05" ; colour "2" ; gene "kap109 ||| SPBC30B4.05" ; Alias "kap109" ; db_xref "SPD:47/47E12" ; GO "GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0005525; GTP binding
GO:0008565; protein transporter activity
GO:0051301; cell division
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=HEAT repeat; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGL238W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "kap109" ; product "karyopherin Kap109" ;
chromosome2 GeneDB mRNA 434811 436051 . + . mRNA SPBC582.09 ; systematic_id "SPBC582.09" ; colour "7" ; gene "pex11 ||| SPBC582.09" ; Alias "pex11" ; db_xref "SPD:17/17C06" ; GO "GO:0007031; peroxisome organization and biogenesis
GO:0005778; peroxisomal membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL147C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pex11" ; product "peroxisomal biogenesis factor 11 (predicted)" ;
chromosome2 GeneDB mRNA 3587313 3588633 . - . mRNA SPBC16D10.01c ; systematic_id "SPBC16D10.01c" ; colour "10" ; gene "SPBC418.03c ||| SPBC16D10.01c" ; note "transcriptional coregulation predicts a role in ribosome biogenesis for S. cerevisiae ortholog, which is supported by nueceolar localization, however S. cerevisie interaction data indicates a connection to glycolysis" ; Alias "SPBC418.03c" ; db_xref "SPD:15/15A06" ; synonym "SPBC418.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR161W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPBC418.03c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 2207697 2209340 . + . mRNA SPBC14C8.03 ; systematic_id "SPBC14C8.03" ; colour "7" ; gene "fma2 ||| SPBC14C8.03" ; Alias "fma2" ; db_xref "SPD:20/20E05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human MetAP-2 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YBL091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004177; aminopeptidase activity
GO:0035551; protein initiator methionine removal involved in protein maturation
GO:0051604; protein maturation
GO:0006508; proteolysis" ; primary_name "fma2" ; product "methionine aminopeptidase Fma2 (predicted)" ; EC_number "3.4.11.18" ; reserved_name "fma2" ;
chromosome2 GeneDB mRNA 3721622 3722996 . + . mRNA SPBC25D12.04 ; systematic_id "SPBC25D12.04" ; colour "2" ; gene "suc22 ||| SPBC25D12.04" ; Alias "suc22" ; db_xref "SPD:32/32E12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL026W and YGR180C; date=19700101 ||| term=localization, undergoes nucleocytoplasmic shuttling; cv=localization; date=20080115 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=gene expression, promoter contains MCB; db_xref=PMID:8842148; date=20100805" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005971; ribonucleoside-diphosphate reductase complex
GO:0005515; protein binding
GO:0004748; ribonucleoside-diphosphate reductase activity
GO:0009216; purine deoxyribonucleoside triphosphate biosynthesis
GO:0042278; purine nucleoside metabolism
GO:0009212; pyrimidine deoxyribonucleoside triphosphate biosynthesis
GO:0006213; pyrimidine nucleoside metabolism
GO:0090329; regulation of DNA-dependent replication
GO:0007090; regulation of S phase of mitotic cell cycle" ; primary_name "suc22" ; product "ribonucleotide reductase small subunit Suc22" ; EC_number "1.17.4.1" ;
chromosome2 GeneDB mRNA 3433808 3434686 . - . mRNA SPBC4B4.12c ; db_xref "SPD:01/01H08" ; systematic_id "SPBC4B4.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC4B4.12c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 851852 853559 . - . mRNA SPBC36.06c ; systematic_id "SPBC36.06c" ; colour "2" ; gene "spo9 ||| SPBC36.06c" ; note "Fps1 appears to have YJL167W has retained the functions YPL069C, Spo9 (Fps1 paralog) appears to have farnesyltransferase like S. cerevisiae BTS1 YPL069C which does not have a direct ortholog in fission yeast" ; Alias "spo9" ; db_xref "SPD:22/22B05" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL167W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17596513; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005515; protein binding
GO:0004660; protein farnesyltransferase activity
GO:0006696; ergosterol biosynthetic process
GO:0018342; protein prenylation
GO:0030437; sporulation (sensu Fungi)" ; primary_name "spo9" ; product "farnesyl pyrophosphate synthetase" ; EC_number "2.5.1.1" ;
chromosome2 GeneDB mRNA 1833148 1834848 . - . mRNA SPBC9B6.11c ; systematic_id "SPBC9B6.11c" ; colour "7" ; gene "SPBC9B6.11c" ; note "NOTE the exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript function performed by the S. cerevisiae ortholog NRG2 is performend by non orthologous eri1 in pombe PMID: 18438419" ; db_xref "SPD:26/26B05" ; GO "GO:0004521; endoribonuclease activity
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML118W and YMR285C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "CCR4/nocturin family endoribonuclease (predicted)" ;
chromosome2 GeneDB mRNA 2895855 2896587 . + . mRNA SPBP4H10.12 ; db_xref "SPD:42/42F11" ; systematic_id "SPBP4H10.12" ; colour "10" ; GO "GO:0016020; membrane
GO:0003824; catalytic activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR137W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBP4H10.12" ; product "conserved protein" ;
chromosome2 GeneDB mRNA 1032857 1033776 . - . mRNA SPBC337.02c ; db_xref "SPD:12/12G09" ; systematic_id "SPBC337.02c" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; controlled_curation "term=warning, frameshifted; cv=warning; date=20080829" ; colour "10" ; gene "SPBC337.02c" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 6" ;
chromosome2 GeneDB mRNA 2647809 2648464 . - . mRNA SPBC6B1.12c ; systematic_id "SPBC6B1.12c" ; colour "2" ; gene "SPBC6B1.12c ||| sus1" ; Alias "sus1" ; db_xref "SPD:52/52C06" ; GO "GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0016573; histone acetylation
GO:0006338; chromatin remodeling" ; controlled_curation "term=orthologous to S. cerevisiae YBR111W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "sus1" ; product "SAGA complex subunit Sus1" ;
chromosome2 GeneDB mRNA 1361041 1362146 . - . mRNA SPBC8D2.02c ; db_xref "SPD:31/31H03" ; systematic_id "SPBC8D2.02c" ; colour "7" ; GO "GO:0006623; protein targeting to vacuole
GO:0000329; vacuolar membrane (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL129W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC8D2.02c" ; product "vacuolar sorting protein Vps68 (predicted)" ;
chromosome2 GeneDB mRNA 4351867 4352308 . + . mRNA SPBC16C6.11 ; systematic_id "SPBC16C6.11" ; colour "2" ; gene "rpl3201 ||| rpl32-1 ||| SPBC16C6.11" ; Alias "rpl3201" ; db_xref "SPD:39/39G09" ; synonym "rpl32-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL092W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl3201" ; product "60S ribosomal protein L32" ;
chromosome2 GeneDB mRNA 487971 489401 . + . mRNA SPBC902.03 ; db_xref "SPD:05/05E05" ; systematic_id "SPBC902.03" ; colour "7" ; GO "GO:0030437; ascospore formation
GO:0007126; meiosis
GO:0006998; nuclear envelope organization
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0008287; Nem1-Spo7 complex
GO:0071071; regulation of cellular phospholipid biosynthetic process
GO:0019888; protein phosphatase regulator activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YAL009W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC902.03" ; product "Nem1-Spo7 complex regulatory subunit Spo7 (predicted)" ;
chromosome2 GeneDB mRNA 3744065 3750000 . - . mRNA SPBC13G1.10c ; systematic_id "SPBC13G1.10c" ; colour "7" ; gene "SPBC13G1.10c ||| mug81" ; Alias "mug81" ; db_xref "SPD:48/48H09" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005737; cytoplasm
GO:0006417; regulation of translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YGR271W; date=19700101 ||| term=human ASCC3 ortholog; date=20080925 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mug81" ; product "ATP-dependent RNA helicase Slh1 (predicted)" ;
chromosome2 GeneDB mRNA 3867334 3868638 . - . mRNA SPBC23E6.10c ; db_xref "SPD:16/16G09" ; systematic_id "SPBC23E6.10c" ; colour "7" ; GO "GO:0019509; methionine salvage
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0046523; S-methyl-5-thioribose-1-phosphate isomerase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC23E6.10c" ; product "methylthioribose-1-phosphate isomerase (predicted)" ;
chromosome2 GeneDB mRNA 3303292 3304037 . + . mRNA SPBC20F10.10 ; systematic_id "SPBC20F10.10" ; colour "7" ; gene "SPBC20F10.10 ||| psl1" ; Alias "psl1" ; db_xref "SPD:08/08G10" ; GO "GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0000307; cyclin-dependent protein kinase holoenzyme complex
GO:0000079; regulation of cyclin-dependent protein kinase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YER059W and YIL050W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Pcl-Seven like Cyclin; date=20100702" ; primary_name "psl1" ; product "cyclin pho85 family (predicted)" ; reserved_name "psl1" ;
chromosome2 GeneDB mRNA 47428 49071 . + . mRNA SPBPB8B6.03 ; systematic_id "SPBPB8B6.03" ; colour "10" ; gene "SPBPB8B6.03" ; obsolete_name "SPAP8B6.03" ; db_xref "SPD:50/50H11" ; GO "GO:0006631; fatty acid metabolic process" ; controlled_curation "term=orthologous to S. cerevisiae YDR242W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; product "acetamidase (predicted)" ; EC_number "3.5.1.4" ;
chromosome2 GeneDB mRNA 1460575 1461302 . + . mRNA SPBC32H8.05 ; db_xref "SPD:41/41C10" ; systematic_id "SPBC32H8.05" ; colour "10" ; GO "GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL028C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC32H8.05" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 548360 549812 . + . mRNA SPBC354.03 ; systematic_id "SPBC354.03" ; colour "2" ; gene "swd3 ||| SPBC354.03" ; Alias "swd3" ; db_xref "SPD:43/43H03" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0000790; nuclear chromatin
GO:0051568; histone H3-K4 methylation" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human WDR5 ortholog; date=20090801 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100805" ; primary_name "swd3" ; product "WD repeat protein Swd3" ;
chromosome2 GeneDB mRNA 321653 322972 . - . mRNA SPBC1773.17c ; systematic_id "SPBC1773.17c" ; colour "7" ; gene "SPBC1773.17c ||| SPBP26C9.01c" ; db_xref "SPD:32/32D01" ; synonym "SPBP26C9.01c" ; GO "GO:0005634; nucleus
GO:0005739; mitochondrion
GO:0005737; cytoplasm
GO:0047964; glyoxylate reductase activity
GO:0009436; glyoxylate catabolic process
GO:0006111; regulation of gluconeogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL274C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; product "glyoxylate reductase (predicted)" ;
chromosome2 GeneDB mRNA 7663 9271 . + . mRNA SPBC1348.02 ; obsolete_name "SPAC1348.02" ; db_xref "SPD:51/51C07" ; systematic_id "SPBC1348.02" ; colour "12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; gene "SPBC1348.02" ; product "S. pombe specific 5Tm protein family" ;
chromosome2 GeneDB mRNA 2236456 2237778 . - . mRNA SPBC15C4.01c ; systematic_id "SPBC15C4.01c" ; colour "2" ; gene "oca3 ||| SPBC15C4.01c ||| emc2" ; Alias "oca3" ; obsolete_name "SPBC14C8.18c" ; db_xref "SPD:17/17E07" ; synonym "emc2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YJR088C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TTC35 ortholog; date=20110201" ; GO "GO:0005783; endoplasmic reticulum
GO:0034975; protein folding in the endoplasmic reticulum
; regulation of mitotic cell cycle
GO:0072546; ER membrane protein complex" ; primary_name "oca3" ; product "TPR repeat protein Oca3/ ER membrane protein complex Ecm2 (predicted)" ;
chromosome2 GeneDB mRNA 1137906 1138723 . + . mRNA SPBC409.03 ; systematic_id "SPBC409.03" ; colour "2" ; gene "swi5 ||| SPBC409.03" ; note "the gene predicted of YHR079C-A was extended to detect this similarity" ; Alias "swi5" ; db_xref "SPD:42/42B08" ; controlled_curation "term=orthologous to S. cerevisiae YHR079C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, focus formation at heterochromatic regions, Swi2_dependent; db_xref=PMID:17304215; date=20090210 ||| term=misc, focus formation at DNA damage sites, Swi5_dependent; db_xref=PMID:17304215; date=20090210 ||| term=misc, accumulation and persistence of Swi5 foci in rhp54 delta cells; db_xref=PMID:17304215; date=20090210 ||| term=misc, facilitates Rhp51 assembly at damage sites independently of Rhp57; db_xref=PMID:17304215; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant produced each recombination class (gene conversion, crossover and long tract gene conversion) at frequencies similar to that of the rhp51delta single mutant; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, increased frequency of long tract gene conversion in the rhp57 delta single mutant was suppressed in the swi5delta rhp57delta double mutant, to a level similar to that observed in the rhp51 mutant; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=misc, swi5delta rhp57delta double mutant showed a repair profile very similar to that to the rhp51deltasingle mutant; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=phenotype, DNA recombination defects, gene conversion, reduced; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, long tract gene conversion, increased; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210" ; GO "GO:0032798; Swi5-Sfr1 complex
GO:0034974; Swi5-Swi2 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000730; DNA recombinase assembly
GO:0000724; double-strand break repair via homologous recombination
GO:0007533; mating type switching
GO:0000711; meiotic DNA repair synthesis
GO:0000709; meiotic joint molecule formation
GO:0000709; meiotic joint molecule formation
GO:0007131; meiotic recombination" ; primary_name "swi5" ; product "Swi5 protein" ;
chromosome2 GeneDB mRNA 1743968 1744761 . - . mRNA SPBC1D7.04 ; systematic_id "SPBC1D7.04" ; colour "2" ; gene "mlo3 ||| SPBC1D7.04" ; Alias "mlo3" ; db_xref "SPD:31/31F04" ; GO "GO:0005634; nucleus
GO:0000346; transcription export complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR381W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15990877; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=name description, Missegregation and Lethal when Overexpressed; db_xref=PMID:8972853; date=20100723" ; primary_name "mlo3" ; product "RNA binding protein Mlo3" ;
chromosome2 GeneDB mRNA 356910 357332 . + . mRNA SPBC1271.08c ; db_xref "SPD:03/03D11" ; systematic_id "SPBC1271.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC1271.08c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4513614 4514667 . - . mRNA SPBCPT2R1.04c ; db_xref "SPD:52/52C09" ; systematic_id "SPBCPT2R1.04c" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; gene "SPBCPT2R1.04c" ; product "S. pombe specific DUF999 protein family 10" ;
chromosome2 GeneDB mRNA 1227762 1228307 . + . mRNA SPBC725.12 ; literature "PMID:19570910" ; systematic_id "SPBC725.12" ; colour "2" ; gene "SPBC725.12 ||| mug118" ; Alias "nbl1" ; db_xref "SPD:01/01H12" ; synonym "mug118" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0032133; chromosome passenger complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005819; spindle
GO:0051233; spindle midzone
GO:0005730; nucleolus" ; controlled_curation "term=orthologous to S. cerevisiae YHR199C-A; date=20080116 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20090130 ||| term=species distribution, conserved in Metazoa; date=20090130 ||| term=species distribution, conserved in Vertebrates; date=20090130 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:19570910; date=20090707 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:19570910; date=20090707 ||| term=phenotype, cut; qualifier=deletion; cv=phenotype; db_xref=PMID:19570910; date=20090707 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=in_vitro; db_xref=PMID:19570910; date=20090707" ; primary_name "nbl1" ; product "Borealin homolog Nbl1" ;
chromosome2 GeneDB mRNA 3084397 3085337 . - . mRNA SPBC30D10.08 ; systematic_id "SPBC30D10.08" ; colour "7" ; gene "SPBC30D10.08 ||| mgm101" ; Alias "mgm101" ; db_xref "SPD:43/43C09" ; GO "GO:0000262; mitochondrial chromosome
GO:0003677; DNA binding
GO:0006281; DNA repair
GO:0000002; mitochondrial genome maintenance
GO:0043504; mitochondrial DNA repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=orthologous to S. cerevisiae YJR144W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; primary_name "mgm101" ; product "mitochondrial DNA repair protein (predicted)" ;
chromosome2 GeneDB mRNA 3898065 3899603 . + . mRNA SPBC1604.18c ; db_xref "SPD:23/23D10" ; systematic_id "SPBC1604.18c" ; colour "7" ; GO "GO:0000815; ESCRT III complex
GO:0045324; late endosome to vacuole transport
GO:0043162; ubiquitin-dependent protein catabolism via the multivesicular body pathway
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL049W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1604.18c" ; product "vacuolar sorting protein (predicted)" ;
chromosome2 GeneDB mRNA 1928803 1929870 . + . mRNA SPBC16E9.08 ; systematic_id "SPBC16E9.08" ; colour "2" ; gene "mcp4 ||| SPBC16E9.08 ||| mug101" ; Alias "mcp4" ; db_xref "SPD:16/16D06" ; synonym "mug101" ; GO "GO:0005737; cytoplasm
; prospore membrane
GO:0007015; actin filament organization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Meiosis specific Coiled-coil Protein; cv=name_description; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, no apparent orthologs; date=20070810 ||| term=name description, Meiotically Upregulated Gene; db_xref=PMID:16303567; cv=name_description; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908" ; primary_name "mcp4" ; product "prospore membrane protein Mcp4/Mug101" ;
chromosome2 GeneDB mRNA 289533 290758 . + . mRNA SPBC1773.04 ; db_xref "SPD:15/15A05" ; systematic_id "SPBC1773.04" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL157W and YOL151W and YGL039W and YDR541C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0043892; mythylglyoxyl reductase (NADPH- dependent) activity
GO:0006696; ergosterol metabolic process" ; gene "SPBC1773.04" ; product "mythylglyoxyl reductase (NADPH-dependent) (predicted)" ;
chromosome2 GeneDB mRNA 3785808 3788230 . + . mRNA SPBC31F10.16 ; db_xref "SPD:37/37H07" ; systematic_id "SPBC31F10.16" ; colour "7" ; GO "GO:0030136; clathrin-coated vesicle
GO:0030140; trans-Golgi network transport vesicle
GO:0006893; Golgi to plasma membrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR237W and YJL099W and YOR299W and YKR027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC31F10.16" ; product "ChAPs family protein (predicted)" ;
chromosome2 GeneDB mRNA 128825 129598 . + . mRNA SPBC359.06 ; systematic_id "SPBC359.06" ; colour "10" ; gene "SPBC359.06 ||| mug14" ; Alias "mug14" ; db_xref "SPD:09/09E12" ; GO "GO:0016829; lyase activity
GO:0015629; actin cytoskeleton" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug14" ; product "adducin" ;
chromosome2 GeneDB mRNA 3022405 3023010 . + . mRNA SPBC15D4.06 ; systematic_id "SPBC15D4.06" ; colour "7" ; gene "SPBC15D4.06" ; Alias "naa30" ; db_xref "SPD:42/42C07" ; synonym "mak3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; GO "GO:0004596; peptide alpha-N-acetyltransferase activity
GO:0031417; NatC complex
GO:0017196; N-terminal peptidyl-methionine acetylation" ; primary_name "naa30" ; product "NatC N-acetyltransferase complex catalytic subunit Naa30 (predicted)" ;
chromosome2 GeneDB mRNA 414933 416965 . + . mRNA SPBC106.19 ; db_xref "SPD:44/44H12" ; systematic_id "SPBC106.19" ; synonym "SPBC582.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2563536 2565268 . - . mRNA SPBC29A10.11c ; systematic_id "SPBC29A10.11c" ; colour "7" ; gene "vps902 ||| vps9b ||| SPBC29A10.11c" ; note "PMID:16823372 predict a frameshift at base 1339" ; Alias "vps902" ; db_xref "SPD:51/51D03" ; synonym "vps9b" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML097C; date=19700101 ||| term=CUE domain protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005829; cytosol
GO:0006623; protein targeting to vacuole
GO:0005085; guanyl-nucleotide exchange factor activity" ; primary_name "vps902" ; product "guanyl-nucleotide exchange factor Vps902 (predicted)" ;
chromosome2 GeneDB mRNA 2772768 2774447 . + . mRNA SPBC685.02 ; systematic_id "SPBC685.02" ; colour "7" ; gene "SPBC685.02" ; db_xref "SPD:25/25C04" ; Alias "exo5" ; GO "GO:0005739; mitochondrion
GO:0045145; single stranded DNA specific 5'-3' exodeoxyribonuclease activity
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR163W; date=19700101 ||| term=human c1orf176 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "exo5" ; product "mitochondrial single stranded DNA specific 5'-3' exodeoxyribonuclease Exo5 (predicted)" ;
chromosome2 GeneDB mRNA 4501956 4502396 . - . mRNA SPBPB2B2.17c ; db_xref "SPD:41/41B10" ; systematic_id "SPBPB2B2.17c" ; controlled_curation "term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; product "S. pombe specific 5Tm protein family" ;
chromosome2 GeneDB mRNA 514207 515910 . + . mRNA SPBC1685.08 ; systematic_id "SPBC1685.08" ; colour "2" ; gene "SPBC1685.08 ||| cti6" ; Alias "cti6" ; db_xref "SPD:24/24A06" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008134; transcription factor binding
GO:0016575; histone deacetylation
GO:0006355; regulation of transcription, DNA- dependent
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded
GO:0019787; small conjugating protein ligase activity
GO:0006338; chromatin remodeling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YPL181W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cti6" ; product "histone deacetylase complex subunit Cti6" ;
chromosome2 GeneDB mRNA 3904660 3907593 . + . mRNA SPBC1604.14c ; systematic_id "SPBC1604.14c" ; colour "2" ; gene "shk1 ||| pak1 ||| orb2 ||| SPBC1604.14c" ; Alias "shk1" ; db_xref "SPD:39/39F04" ; synonym "pak1 ||| orb2" ; GO "GO:0071521; Cdc42 GTPase complex
GO:0032153; cell division site
GO:0051286; cell tip
GO:0005876; spindle microtubule
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0034613; cellular protein localization
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0071775; regulation of cell cycle cytokinesis
GO:0032878; regulation of establishment or maintenance of cell polarity
GO:0032878; regulation of establishment or maintenance of cell polarity
GO:0070507; regulation of microtubule cytoskeleton organization and biogenesis
GO:0032488; Cdc42 protein signal tansduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:8187760; date=20100731 ||| term=PAK-related kinase family; date=19700101 ||| term=orthologous to S. cerevisiae YHL007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=pathway, Ras1-Scd; qualifier=required; db_xref=PMID:7597098; cv=pathway; date=19700101 ||| term=target of Skb15; qualifier=inhibited_by; db_xref=PMID:12764131; date=19700101 ||| term=target is Tea1; qualifier=phosphorylates; db_xref=PMID:12764131; date=20100820 ||| term=target is Rga8; qualifier=phosphorylates; db_xref=PMID:14506270; date=20100820 ||| term=target is Cdc42; qualifier=phosphorylates; db_xref=PMID:9858584; date=20100820" ; primary_name "shk1" ; product "PAK-related kinase Shk1" ;
chromosome2 GeneDB mRNA 2297164 2300422 . - . mRNA SPBC16H5.02 ; systematic_id "SPBC16H5.02" ; colour "2" ; gene "pfk1 ||| SPBC16H5.02" ; Alias "pfk1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00030; ||| KEGG:MAP00051; ||| KEGG:MAP00052; ||| SPD:29/29E09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR205C and YGR240C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0003872; 6-phosphofructokinase activity
GO:0003872; 6-phosphofructokinase activity
GO:0006096; glycolysis
GO:0006096; glycolysis
GO:0005945; 6-phosphofructokinase complex
GO:0070095; fructose-6-phosphate binding
GO:0005524; ATP binding" ; primary_name "pfk1" ; product "6-phosphofructokinase (predicted)" ; EC_number "2.7.1.11" ;
chromosome2 GeneDB mRNA 858488 860490 . + . mRNA SPBC36.09 ; systematic_id "SPBC36.09" ; colour "2" ; gene "sap61 ||| SPBC36.09" ; Alias "sap61" ; db_xref "SPD:25/25E08" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YDL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sap61" ; product "U2 snRNP-associated protein sap61" ;
chromosome2 GeneDB mRNA 3479843 3482609 . + . mRNA SPBC1718.06 ; systematic_id "SPBC1718.06" ; colour "2" ; gene "msp1 ||| SPBC1718.06" ; Alias "msp1" ; db_xref "SPD:33/33H10" ; synonym "mgm1" ; GO "GO:0003924; GTPase activity
GO:0007005; mitochondrion organization and biogenesis
GO:0000002; mitochondrial genome maintenance
GO:0008053; mitochondrial fusion
GO:0008053; mitochondrial fusion
GO:0000002; mitochondrial genome maintenance
GO:0005525; GTP binding
GO:0005515; protein binding
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, optic atrophy; date=19700101 ||| term=orthologous to S. cerevisiae YOR211C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20100304" ; primary_name "msp1" ; product "mitochondrial dynamin family GTPase Msp1" ;
chromosome2 GeneDB mRNA 725343 730687 . + . mRNA SPBC119.07 ; systematic_id "SPBC119.07" ; colour "2" ; gene "ppk19 ||| SPBC119.07" ; Alias "ppk19" ; db_xref "SPD:48/48H02" ; synonym "vps15" ; GO "GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0045324; late endosome to vacuole transport
; retrograde transport, endosome to Golgi" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=20070501 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YBR097W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Ric1; db_xref=PMID:20623139; date=20101005" ; primary_name "ppk19" ; product "serine/threonine protein kinase Ppk19" ;
chromosome2 GeneDB mRNA 2164136 2165996 . + . mRNA SPBC1711.16 ; db_xref "SPD:25/25B06" ; systematic_id "SPBC1711.16" ; colour "7" ; GO "GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR196W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC1711.16" ; product "WD repeat protein (predicted)" ;
chromosome2 GeneDB mRNA 1942648 1944908 . + . mRNA SPBC16E9.13 ; systematic_id "SPBC16E9.13" ; colour "2" ; gene "ksp1 ||| ppk20 ||| SPBC16E9.13" ; Alias "ksp1" ; db_xref "SPD:21/21H09" ; synonym "ppk20" ; GO "GO:0005634; nucleus
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YHR082C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ksp1" ; product "serine/threonine protein kinase Ksp1 (predicted)" ;
chromosome2 GeneDB mRNA 4233935 4236257 . - . mRNA SPBC16G5.12c ; systematic_id "SPBC16G5.12c" ; colour "2" ; gene "top3 ||| SPBC16G5.12c" ; Alias "top3" ; db_xref "SPD:40/40H04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10572171; date=19700101 ||| term=phenotype, DNA damage checkpoint defects; qualifier=deletion; cv=phenotype; db_xref=PMID:12409469; date=20080218 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10572171; date=20100705 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:10572171; date=20100705 ||| term=orthologous to S. cerevisiae YLR234W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031422; RecQ helicase-Topo III complex
GO:0005634; nucleus
GO:0003917; DNA topoisomerase type I activity
GO:0005515; protein binding
GO:0006259; DNA metabolic process
GO:0006261; DNA replication
GO:0000070; mitotic sister chromatid segregation
GO:0031297; collapsed replication fork processing
GO:0043007; maintenance of rDNA
GO:0045910; negative regulation of DNA recombination
GO:0000280; nuclear division
GO:0007000; nucleolus organization and biogenesis
GO:0000712; resolution of meiotic joint molecules as recombinants" ; primary_name "top3" ; product "DNA topoisomerase III" ; EC_number "5.99.1.2" ;
chromosome2 GeneDB mRNA 1106447 1108481 . + . mRNA SPBC1709.05 ; systematic_id "SPBC1709.05" ; colour "2" ; gene "sks2 ||| hsc1 ||| SPBC1709.05" ; note "ask2 is the name which was given to the spurious orf on the opposite strand" ; Alias "sks2" ; db_xref "SPD:33/33E06" ; synonym "hsc1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, resistance to K- 252a; qualifier=overexpression; db_xref=PMID:9161410; cv=phenotype; date=20090729 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9161410; cv=phenotype; date=20090729 ||| term=orthologous to S. cerevisiae YDL229W and YNL209W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc functional group, chaperone; cv=m_f_g; date=20090729" ; GO "GO:0007346; regulation of mitotic cell cycle
GO:0051083; 'de novo' cotranslational protein folding
GO:0016887; ATPase activity
GO:0051082; unfolded protien binding
GO:0061077; chaperone-mediated protein folding" ; primary_name "sks2" ; product "heat shock protein, ribosome associated molecular chaperone Sks2" ;
chromosome2 GeneDB mRNA 362845 364828 . + . mRNA SPBC1271.05c ; db_xref "SPD:07/07D09" ; systematic_id "SPBC1271.05c" ; colour "10" ; GO "GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-AN1 type; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YOR052C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1271.05c" ; product "zf-AN1 type zinc finger protein" ;
chromosome2 GeneDB mRNA 2863815 2868360 . + . mRNA SPBP19A11.06 ; systematic_id "SPBP19A11.06" ; colour "2" ; gene "lid2 ||| SPBP19A11.06 ||| SPBP4H10.01" ; Alias "lid2" ; db_xref "SPD:49/49H05" ; synonym "SPBP4H10.01" ; GO "GO:0048189; Lid2 complex
GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0032452; histone demethylase activity
GO:0006338; chromatin remodeling
GO:0016577; histone demethylation
GO:0006355; regulation of transcription, DNA- dependent
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, branched; db_xref=PMID:18957202; date=20100727 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:18957202; date=20100727 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=zf-C5HC2 type; date=19700101 ||| term=jmjC domain; date=19700101 ||| term=ARID domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=jmjN domain; date=20080901 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human KMD5A ortholog; date=20100217" ; primary_name "lid2" ; product "Lid2 complex subunit, predicted histone demethylase Lid2" ;
chromosome2 GeneDB mRNA 1802123 1803286 . - . mRNA SPBC18H10.18c ; db_xref "SPD:51/51C01" ; systematic_id "SPBC18H10.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPCC1682.06; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC18H10.18c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2411051 2411404 . - . mRNA SPBC1921.04c ; db_xref "SPD:02/02C12" ; systematic_id "SPBC1921.04c" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, opposite strand to sno20; cv=warning; date=20100119" ; colour "6" ; gene "SPBC1921.04c" ; product "dubious" ;
chromosome2 GeneDB mRNA 2143124 2144228 . + . mRNA SPBC1711.06 ; systematic_id "SPBC1711.06" ; colour "7" ; gene "rpl401 ||| rpl4-1 ||| rpl4 ||| SPBC1711.06" ; Alias "rpl401" ; obsolete_name "rpl402 ||| rpl4-2" ; db_xref "SPD:32/32E03" ; synonym "rpl4-1 ||| rpl4" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, acetylated; cv=pt_mod; qualifier=predicted; date=20060518 ||| term=orthologous to S. cerevisiae YBR031W and YDR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; GO "GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation" ; primary_name "rpl401" ; product "60S ribosomal protein L2 (predicted)" ;
chromosome2 GeneDB mRNA 2126512 2127947 . + . mRNA SPBC23G7.14 ; db_xref "SPD:03/03A02" ; systematic_id "SPBC23G7.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC23G7.14" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 299347 301356 . - . mRNA SPBC1773.09c ; systematic_id "SPBC1773.09c" ; colour "2" ; gene "mug184 ||| SPBC1773.09c" ; Alias "mug184" ; db_xref "SPD:36/36H10" ; GO "GO:0030544; Hsp70 protein binding
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC11B10.05C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug184" ; product "meiotically upregulated gene Mug184" ;
chromosome2 GeneDB mRNA 1726659 1727486 . + . mRNA SPBC2F12.07c ; systematic_id "SPBC2F12.07c" ; colour "7" ; gene "rpl802 ||| rpl8-2 ||| rpk37 ||| SPBC2F12.07c ||| rpk5b" ; Alias "rpl802" ; synonym "rpl8-2 ||| rpk37 ||| rpk5b" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR031C-A and YIL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0019843; rRNA binding" ; primary_name "rpl802" ; product "60S ribosomal protein L8 (predicted)" ;
chromosome2 GeneDB mRNA 1416921 1418796 . - . mRNA SPBC17A3.09c ; systematic_id "SPBC17A3.09c" ; colour "7" ; gene "SPBC17A3.09c" ; Alias "aim22" ; obsolete_name "pi037" ; db_xref "SPD:32/32E02" ; GO "GO:0016979; lipoate-protein ligase activity
GO:0009249; protein lipoylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL046W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "aim22" ; product "lipoate-protein ligase A (predicted)" ; EC_number "6.3.4.-" ;
chromosome2 GeneDB mRNA 312852 314682 . + . mRNA SPBC1773.14 ; systematic_id "SPBC1773.14" ; colour "2" ; gene "arg7 ||| SPBC1773.14" ; Alias "arg7" ; db_xref "SPD:40/40E04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, arginosuccinicaciduria; date=20060920 ||| term=orthologous to S. cerevisiae YHR018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004056; argininosuccinate lyase activity
GO:0006526; arginine biosynthesis
GO:0005829; cytosol
GO:0000050; urea cycle" ; primary_name "arg7" ; product "argininosuccinate lyase" ; EC_number "4.3.2.1" ;
chromosome2 GeneDB mRNA 1911956 1913716 . - . mRNA SPBP16F5.08c ; db_xref "SPD:32/32H05" ; systematic_id "SPBP16F5.08c" ; colour "7" ; GO "GO:0006457; protein folding
GO:0005789; endoplasmic reticulum membrane
GO:0004499; flavin-containing monooxygenase activity
GO:0050661; NADP binding
GO:0050660; FAD binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR176W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPBP16F5.08c" ; product "flavin dependent monooxygenase (predicted)" ;
chromosome2 GeneDB mRNA 2748734 2750001 . - . mRNA SPBC336.06c ; systematic_id "SPBC336.06c" ; colour "7" ; gene "rnh1 ||| SPBC336.06c" ; Alias "rnh1" ; db_xref "SPD:32/32B12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR234W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0004523; ribonuclease H activity
GO:0006401; RNA catabolic process" ; primary_name "rnh1" ; product "ribonuclease H Rnh1 (predicted)" ; EC_number "3.1.26.4" ;
chromosome2 GeneDB mRNA 1428691 1430621 . + . mRNA SPBC691.04 ; systematic_id "SPBC691.04" ; colour "7" ; gene "SPBC691.04" ; obsolete_name "pi031 ||| SPACTOKYO_453.03c" ; db_xref "SPD:49/49A07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDR194C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008380; RNA splicing
GO:0005759; mitochondrial matrix
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding" ; product "mitochondrial ATP-dependent RNA helicase Mss116 (predicted)" ;
chromosome2 GeneDB mRNA 593188 593575 . - . mRNA SPBC1706.02c ; systematic_id "SPBC1706.02c" ; colour "13" ; gene "wtf2 ||| SPBC1706.02c" ; Alias "wtf2" ; pseudo "_no_value" ; synonym "SPBC1706.02" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf2" ; product "pseudogene wtf element Wtf2" ;
chromosome2 GeneDB mRNA 2171670 2173632 . - . mRNA SPBC17G9.03c ; systematic_id "SPBC17G9.03c" ; colour "7" ; gene "SPBC17G9.03c ||| krs1" ; Alias "krs1" ; db_xref "KEGG:MAP00300; ||| KEGG:MAP00970; ||| SPD:36/36C05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR037W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=OB fold; date=20091106" ; GO "GO:0005737; cytoplasm
GO:0004824; lysine-tRNA ligase activity
GO:0006430; lysyl-tRNA aminoacylation" ; primary_name "krs1" ; product "cytoplasmic lysine-tRNA ligase Krs1 (predicted)" ; EC_number "6.1.1.6" ;
chromosome2 GeneDB mRNA 2685645 2686474 . + . mRNA SPBC3E7.14 ; systematic_id "SPBC3E7.14" ; colour "2" ; gene "smf1 ||| SPBC3E7.14 ||| SPBC4F6.01" ; Alias "smf1" ; db_xref "SPD:02/02D05" ; synonym "SPBC4F6.01" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005685; snRNP U1
GO:0005681; spliceosome complex
GO:0000395; nuclear mRNA 5'-splice site recognition
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YPR182W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "smf1" ; product "Sm snRNP core protein Smf1" ;
chromosome2 GeneDB mRNA 432550 434455 . + . mRNA SPBC582.08 ; db_xref "SPD:36/36B08" ; systematic_id "SPBC582.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YDR111C and YLR089C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0004021; alanine transaminase activity
GO:0042851; L-alanine metabolism
GO:0006537; glutamate biosynthesis" ; gene "SPBC582.08" ; product "alanine aminotransferase (predicted)" ; EC_number "2.6.1.2" ;
chromosome2 GeneDB mRNA 3510534 3512350 . - . mRNA SPBC1105.04c ; systematic_id "SPBC1105.04c" ; colour "2" ; gene "cbp1 ||| abp1 ||| SPBC1105.04c" ; Alias "cbp1" ; db_xref "SPD:33/33B10" ; synonym "abp1" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0019237; centromeric DNA binding
GO:0046983; protein dimerization activity
GO:0016570; histone modification
GO:0030702; chromatin silencing at centromere
GO:0000780; condensed nuclear chromosome, pericentric region
GO:0000790; nuclear chromatin
GO:0005515; protein binding
GO:0006270; DNA replication initiation
GO:0006270; DNA replication initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9024682; date=20070716 ||| term=phenotype, cell morphology, misshapen cells; qualifier=low_penetrance; db_xref=PMID:9024682; date=20100727 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; db_xref=PMID:9024682; date=20100727 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=CENP-B box; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "cbp1" ; product "CENP-B homolog" ;
chromosome2 GeneDB mRNA 4368367 4369742 . + . mRNA SPBC1539.04 ; systematic_id "SPBC1539.04" ; colour "2" ; db_xref "SPD:15/15D12" ; Alias "tts1" ; GO "GO:0016021; integral to membrane
GO:0032541; cortical endoplasmic reticulum
GO:0005635; nuclear envelope
GO:0032153; cell division site
GO:0034613; cellular protein localization
; site selection involved in cell cycle cytokinesis
GO:0071786; endoplasmic reticulum tubular network organization
GO:0071790; establishment of spindle pole body localization at the nuclear envelope
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cytokinesis defects; db_xref=PMID:20434336; cv=phenotype; date=20100517 ||| term=orthologous to S. cerevisiae YLL023C and YLR064W; date=19700101 ||| term=human TMEM33 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, TeTra Spanning protein; db_xref=PMID:20434336; cv=name_description; date=20100517 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101" ; primary_name "tts1" ; product "tetra spanning protein 1, Tts1" ;
chromosome2 GeneDB mRNA 4045900 4047280 . - . mRNA SPBC215.09c ; systematic_id "SPBC215.09c" ; colour "7" ; gene "erg10 ||| SPBC215.09c" ; Alias "erg10" ; db_xref "SPD:19/19H09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, metabolic acidosis; date=20060725 ||| term=orthologous to S. cerevisiae YPL028W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006696; ergosterol biosynthesis
GO:0003985; acetyl-CoA C-acetyltransferase activity
GO:0005829; cytosol" ; primary_name "erg10" ; product "acetyl-CoA C-acetyltransferase Erg10 (predicted)" ; EC_number "2.3.1.9" ; reserved_name "erg10" ;
chromosome2 GeneDB mRNA 2506835 2508214 . + . mRNA SPBC365.06 ; systematic_id "SPBC365.06" ; colour "2" ; gene "pmt3 ||| ubl2 ||| smt3 ||| SPBC365.06" ; Alias "pmt3" ; db_xref "SPD:31/31E04" ; synonym "ubl2 ||| smt3" ; GO "GO:0005634; nucleus
; spindle pole body
GO:0005515; protein binding
GO:0031386; protein tag
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0000070; mitotic sister chromatid segregation
GO:0071441; negative regulation of histone H3-K14 acetylation
GO:0051573; negative regulation of histone H3-K9 methylation
GO:0051572; negative regulation of histone H3-K4 methylation
GO:0016925; protein sumoylation
GO:0000723; telomere maintenance" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance|deletion; db_xref=PMID:10567589; date=20100708 ||| term=phenotype, cut; db_xref=PMID:10567589; qualifier=deletion; date=20100708 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR510W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pmt3" ; product "SUMO" ;
chromosome2 GeneDB mRNA 1578175 1579005 . - . mRNA SPBC28F2.05c ; db_xref "SPD:22/22A10" ; systematic_id "SPBC28F2.05c" ; colour "10" ; GO "GO:0042843; D-xylose catabolism
GO:0019568; arabinose catabolism
GO:0004032; aldehyde reductase activity
GO:0004033; aldo-keto reductase activity
GO:0032866; xylose reductase activity
GO:0032867; arabinose reductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPBC28F2.05c" ; product "xylose and arabinose reductase (predicted)" ;
chromosome2 GeneDB mRNA 49143 51181 . - . mRNA SPBPB8B6.04c ; systematic_id "SPBPB8B6.04c" ; colour "2" ; gene "grt1 ||| SPBPB8B6.04c" ; Alias "grt1" ; obsolete_name "SPAP8B6.04c" ; db_xref "SPD:51/51A05" ; synonym "SPAPB8B6.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0008270; zinc ion binding
GO:0000091; mitotic anaphase A
GO:0006355; regulation of transcription, DNA- dependent" ; primary_name "grt1" ; product "transcription factor Grt1 (predicted)" ;
chromosome2 GeneDB mRNA 2081514 2082179 . + . mRNA SPBC18E5.04 ; systematic_id "SPBC18E5.04" ; colour "2" ; gene "rpl1001 ||| rpl10-1 ||| SPBC18E5.04 ||| rpl10" ; Alias "rpl1001" ; db_xref "SPD:31/31G09" ; synonym "rpl10-1 ||| rpl10" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR075W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1001" ; product "60S ribosomal protein L10" ;
chromosome2 GeneDB mRNA 1871847 1873320 . + . mRNA SPBC3H7.06c ; systematic_id "SPBC3H7.06c" ; colour "2" ; gene "pof9 ||| SPBC3H7.06c" ; Alias "pof9" ; db_xref "SPD:23/23G08" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR280C; date=19700101 ||| term=regulator of condensation (RCC1) domains; date=20071202 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "pof9" ; product "F-box protein Pof9" ;
chromosome2 GeneDB mRNA 3766835 3769965 . - . mRNA SPBC31F10.10c ; db_xref "SPD:35/35F08" ; systematic_id "SPBC31F10.10c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-MYND type; date=19700101 ||| term=orthologous to S. cerevisiae YMR100W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0007127; meiosis I
GO:0007126; meiosis
GO:0016567; protein ubiquitination" ; gene "SPBC31F10.10c" ; product "zf-MYND type zinc finger protein" ;
chromosome2 GeneDB mRNA 2733218 2736020 . + . mRNA SPBC336.01 ; systematic_id "SPBC336.01" ; colour "2" ; gene "fbh1 ||| fdh1 ||| fdh ||| SPBC336.01" ; Alias "fbh1" ; db_xref "SPD:38/38H09" ; synonym "fdh1 ||| fdh" ; GO "GO:0005634; nucleus
GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0017116; single-stranded DNA-dependent ATP- dependent DNA helicase activity
GO:0006310; DNA recombination
GO:0031297; collapsed replication fork processing
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0005634; nucleus
GO:0000018; regulation of DNA recombination
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:16135800; date=20100730 ||| term=F-box protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:16135800; date=20101004" ; primary_name "fbh1" ; product "DNA helicase I" ;
chromosome2 GeneDB mRNA 1676502 1677988 . - . mRNA SPBC19C2.04c ; systematic_id "SPBC19C2.04c" ; colour "2" ; gene "SPBC19C2.04c ||| ubp11" ; Alias "ubp11" ; db_xref "SPD:16/16A12" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005739; mitochondrion
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101" ; primary_name "ubp11" ; product "ubiquitin C-terminal hydrolase Ubp11" ;
chromosome2 GeneDB mRNA 3452323 3453406 . - . mRNA SPBC2G2.09c ; systematic_id "SPBC2G2.09c" ; colour "2" ; gene "crs1 ||| mug17 ||| SPBC2G2.09c" ; Alias "crs1" ; db_xref "SPD:10/10F06" ; synonym "mug17" ; GO "GO:0007126; meiosis
GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; qualifier=predicted; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20070704 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; date=20070704 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20080908 ||| term=name description, Cyclin-like protein Regulated via Splicing; db_xref=PMID:15893732; cv=name_description; date=20070704 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:15893732; date=20080707 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "crs1" ; product "meiosis specific cyclin Crs1" ;
chromosome2 GeneDB mRNA 4237029 4237634 . + . mRNA SPBC16G5.13 ; systematic_id "SPBC16G5.13" ; colour "8" ; gene "SPBC16G5.13" ; db_xref "SPD:02/02G10" ; Alias "ptf2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; primary_name "ptf2" ; product "sequence orphan" ; reserved_name "ptf2" ;
chromosome2 GeneDB mRNA 3026425 3028353 . - . mRNA SPBC15D4.09c ; systematic_id "SPBC15D4.09c" ; colour "7" ; gene "SPBC15D4.09c" ; note "candidate for met3, but not proven experimentally; pers. comm. Juerg Kohli" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00271; ||| KEGG:MAP00272; ||| KEGG:MAP00450; ||| KEGG:MAP00920; ||| SPD:36/36G02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR130C and YML082W and YLL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003962; cystathionine gamma-synthase activity
GO:0006534; cysteine metabolism
GO:0019281; methionine biosynthesis from homoserine via O-succinyl-L-homoserine and cystathione" ; product "cystathionine gamma-synthase (predicted)" ; EC_number "2.5.1.48" ; reserved_name "met3" ;
chromosome2 GeneDB mRNA 3805775 3806834 . + . mRNA SPBC21C3.05 ; systematic_id "SPBC21C3.05" ; colour "2" ; gene "sap62 ||| SPBC21C3.05" ; Alias "sap62" ; db_xref "SPD:15/15F06" ; GO "GO:0003723; RNA binding
GO:0000245; spliceosome assembly
GO:0005686; snRNP U2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-ZNF_U1; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YDL043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sap62" ; product "zinc finger protein Sap62" ;
chromosome2 GeneDB mRNA 1775175 1776935 . - . mRNA SPBC18H10.04c ; systematic_id "SPBC18H10.04c" ; colour "2" ; gene "sce3 ||| tif48 ||| SPBC18H10.04c" ; Alias "sce3" ; db_xref "SPD:33/33A03" ; synonym "tif48" ; GO "GO:0003723; RNA binding
GO:0006413; translational initiation
GO:0003743; translation initiation factor activity
GO:0005840; ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:9254700; cv=phenotype; date=20100406 ||| term=phenotype, no obvious phenotype; qualifier=deletion; db_xref=PMID:9254700; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YPR163C; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "sce3" ; product "translation initiation factor (predicted)" ;
chromosome2 GeneDB mRNA 3750110 3751266 . + . mRNA SPBC13G1.11 ; systematic_id "SPBC13G1.11" ; colour "7" ; gene "ykt6 ||| SPBC13G1.11" ; Alias "ykt6" ; db_xref "SPD:07/07D03" ; GO "GO:0016192; vesicle-mediated transport
GO:0005484; SNAP receptor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YKL196C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ykt6" ; product "SNARE Ykt6 (predicted)" ;
chromosome2 GeneDB mRNA 1905730 1906798 . + . mRNA SPBP16F5.04 ; systematic_id "SPBP16F5.04" ; colour "2" ; Alias "ubc7" ; obsolete_name "ubc3" ; db_xref "SPD:32/32B06" ; synonym "ubcP3" ; GO "GO:0030466; chromatin silencing at silent mating- type cassette
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0000151; ubiquitin ligase complex
GO:0030433; ER-associated protein catabolic process
GO:0010620; negative regulation of transcription by transcription factor catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target is Sre1; db_xref=PMID:19520858; date=20100308 ||| term=orthologous to S. cerevisiae YMR022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ubc7" ; product "ubiquitin conjugating enzyme Ubc7/UbcP3" ; EC_number "6.3.2.19" ;
chromosome2 GeneDB mRNA 3557115 3559095 . + . mRNA SPBC887.10 ; systematic_id "SPBC887.10" ; colour "2" ; gene "mcs4 ||| SPBC887.10" ; Alias "mcs4" ; db_xref "SPD:33/33B11" ; GO "GO:0031098; stress-activated protein kinase signaling pathway
GO:0034599; cellular response to oxidative stress
GO:0007346; regulation of progression through mitotic cell cycle
GO:0070301; cellular response to hydrogen peroxide
GO:0046685; cellular response to arsenic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; allele=mcs4-13; qualifier=in_minimal_media; db_xref=PMID:2474475; date=20100709 ||| term=orthologous to S. cerevisiae YLR006C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, Mitotic Catastrophe Suppressor; cv=name_description; date=19700101" ; primary_name "mcs4" ; product "response regulator Mcs4" ;
chromosome2 GeneDB mRNA 1418685 1420225 . + . mRNA SPBC17A3.10 ; systematic_id "SPBC17A3.10" ; colour "7" ; gene "pas4 ||| SPBC17A3.10" ; Alias "pas4" ; obsolete_name "pi036" ; db_xref "SPD:32/32B11" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0007031; peroxisome organization and biogenesis
GO:0005778; peroxisomal membrane" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDR265W; date=19700101 ||| term=disease associated, peroxisomal defects; date=20070627 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pas4" ; product "peroxisomal ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB mRNA 1166561 1167275 . - . mRNA SPBC409.14c ; systematic_id "SPBC409.14c" ; colour "7" ; gene "SPBC409.14c ||| mrps17" ; Alias "mrps17" ; db_xref "SPD:01/01C03" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrps17" ; product "mitochondrial ribosomal protein subunit S17 (predicted)" ;
chromosome2 GeneDB mRNA 100001 101140 . - . mRNA SPBPB10D8.07c ; systematic_id "SPBPB10D8.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPL092W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport
GO:0005886; integral to plasma membrane" ; gene "SPBPB10D8.07c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 862635 864669 . + . mRNA SPBC36.11 ; db_xref "SPD:15/15F04" ; systematic_id "SPBC36.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC36.11" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1319070 1320617 . - . mRNA SPBC30B4.07c ; systematic_id "SPBC30B4.07c" ; colour "2" ; gene "tfb4 ||| SPBC30B4.07c" ; Alias "tfb4" ; db_xref "SPD:13/13E03" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0006289; nucleotide-excision repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YPR056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human GTF2H3 ortholog; date=20110113" ; primary_name "tfb4" ; product "transcription factor TFIIH complex subunit Tfb4" ;
chromosome2 GeneDB mRNA 764566 766326 . + . mRNA SPBC577.07 ; systematic_id "SPBC577.07" ; colour "7" ; gene "SPBC577.07 ||| ubp10" ; Alias "ubp10" ; db_xref "SPD:34/34G07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-UBP type; date=19700101 ||| term=orthologous to S. cerevisiae YFR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005634; nucleus
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0004843; ubiquitin-specific protease activity" ; primary_name "ubp10" ; product "ubiquitin C-terminal hydrolase Ubp10 (predicted)" ; reserved_name "ubp10" ;
chromosome2 GeneDB mRNA 3835397 3837278 . - . mRNA SPBC23E6.01c ; systematic_id "SPBC23E6.01c" ; colour "7" ; gene "SPBPJ758.01 ||| SPBC23E6.01c" ; Alias "SPBPJ758.01" ; db_xref "SPD:21/21H03" ; synonym "SPBPJ758.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YBR212W and YHR086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000932; cytoplasmic mRNA processing body
GO:0003729; mRNA binding
GO:0071004; U2-type prespliceosome
GO:0070935; 3' UTR mediated mRNA stabilization" ; primary_name "SPBPJ758.01" ; product "mRNA processing factor (predicted)" ;
chromosome2 GeneDB mRNA 3455201 3456909 . + . mRNA SPBC2G2.11 ; systematic_id "SPBC2G2.11" ; colour "7" ; gene "SPBC2G2.11" ; db_xref "SPD:25/25D04" ; GO "GO:0004379; glycylpeptide N- tetradecanoyltransferase activity
GO:0006499; N-terminal protein myristoylation
GO:0005829; cytosol" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR195C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "N-myristoyltransferase 1 (predicted)" ; reserved_name "myr1" ; EC_number "2.3.1.97" ;
chromosome2 GeneDB mRNA 1473194 1474747 . + . mRNA SPBC32H8.11 ; systematic_id "SPBC32H8.11" ; colour "2" ; gene "mei4 ||| SPBC32H8.11 ||| dot4" ; Alias "mei4" ; obsolete_name "pi013 ||| SPACTOKYO_453.23" ; db_xref "SPD:50/50G12" ; synonym "dot4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=fork head domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=gene expression, expression autoregulated; cv=gene_ex; db_xref=PMID:10747048; date=19700101 ||| term=orthologous to S. cerevisiae YCR065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17927811; date=20090110 ||| term=DNA binding specificity, binds FLEX 5'-GTAAAYA-3'; cv=DNA_binding_specificity; date=20100122" ; GO "GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0051037; regulation of transcription, meiotic
GO:0016566; specific transcriptional repressor activity
GO:0016563; transcriptional activator activity
GO:0010674; negative regulation of transcription from RNA polymerase II promoter, meiotic
GO:0010673; positive regulation of transcription from RNA polymerase II promoter, meiotic" ; primary_name "mei4" ; product "meiotic forkhead transcription factor Mei4" ;
chromosome2 GeneDB mRNA 262581 263669 . + . mRNA SPBC800.06 ; systematic_id "SPBC800.06" ; colour "7" ; gene "brx1 ||| SPBC800.06" ; Alias "brx1" ; db_xref "SPD:12/12A08" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0003723; RNA binding
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "brx1" ; product "ribosome biogenesis protein Brx1 (predicted)" ;
chromosome2 GeneDB mRNA 1536882 1538567 . + . mRNA SPBC83.15 ; db_xref "SPD:25/25B11" ; systematic_id "SPBC83.15" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC83.15" ; product "ribosome biogenesis protein Nsa1 (predicted)" ;
chromosome2 GeneDB mRNA 3405575 3407793 . - . mRNA SPBC13A2.04c ; systematic_id "SPBC13A2.04c" ; colour "7" ; gene "SPBC13A2.04c" ; obsolete_name "ptr2" ; db_xref "SPD:49/49C11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005887; integral to plasma membrane
GO:0042936; dipeptide transporter activity
GO:0042937; tripeptide transporter activity
GO:0035442; dipeptide transmembrane transport
GO:0035443; tripeptide transmembrane transport" ; product "PTR family peptide transporter (predicted)" ;
chromosome2 GeneDB mRNA 2015416 2016296 . + . mRNA SPBP23A10.09 ; systematic_id "SPBP23A10.09" ; colour "2" ; gene "SPBP23A10.09" ; Alias "psf1" ; db_xref "SPD:06/06G12" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0000811; GINS complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0006271; DNA strand elongation during DNA replication
GO:0071169; establishment of protein localization to chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=20091209 ||| term=phenotype, growth defect; cv=phenotype; db_xref=PMID:19109429; qualifier=conditional; date=20091118 ||| term=phenotype, cell morphology, elongated cells; qualifier=conditional; db_xref=PMID:19109429; date=20100727 ||| term=orthologous to S. cerevisiae YDR013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "psf1" ; product "GINS complex subunit Psf1" ;
chromosome2 GeneDB mRNA 3524560 3528735 . + . mRNA SPBC1105.10 ; systematic_id "SPBC1105.10" ; colour "2" ; gene "rav1 ||| SPBC1105.10" ; Alias "rav1" ; db_xref "SPD:48/48F07" ; GO "GO:0043291; RAVE complex
GO:0005737; cytoplasm
GO:0010008; endosome membrane
GO:0032403; protein complex binding
GO:0070072; vacuolar proton-transporting two- sector ATPase complex assembly
GO:0045324; late endosome to vacuole transport
GO:0071277; cellular response to calcium ion
GO:0042493; response to drug
GO:0071294; cellular response to zinc ion
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YJR033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rav1" ; product "RAVE complex subunit Rav1" ;
chromosome2 GeneDB mRNA 1576311 1576867 . + . mRNA SPBC28F2.03 ; systematic_id "SPBC28F2.03" ; colour "2" ; gene "ppi1 ||| cyp2 ||| SPBC28F2.03" ; note "cyp2 in PMID 11690648 is SPAC57A10.03 cyp1" ; Alias "ppi1" ; db_xref "SPD:31/31E03" ; synonym "cyp2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR155C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppi1" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp2" ; EC_number "5.2.1.8" ;
chromosome2 GeneDB mRNA 3226820 3228287 . - . mRNA SPBC21.07c ; systematic_id "SPBC21.07c" ; colour "2" ; gene "ppk24 ||| SPBC21.07c" ; db_xref "SPD:23/23F05" ; Alias "ppk24" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPCC70.05C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure may be incorrect; date=20100529" ; primary_name "ppk24" ; product "serine/threonine protein kinase Ppk24" ; EC_number "2.7.1.-" ;
chromosome2 GeneDB mRNA 4397299 4398783 . + . mRNA SPBC1289.08 ; systematic_id "SPBC1289.08" ; colour "7" ; gene "qri1 ||| uap1 ||| SPBC1289.08" ; Alias "uap1" ; db_xref "SPD:22/22A01" ; synonym "qri1" ; GO "GO:0006048; UDP-N-acetylglucosamine biosynthesis
GO:0003977; UDP-N-acetylglucosamine diphosphorylase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL103C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "uap1" ; product "UDP-N-acetylglucosamine diphosphorylase Uap1/Qri1(predicted)" ; EC_number "2.7.7.23" ;
chromosome2 GeneDB mRNA 1652135 1654451 . - . mRNA SPBC21B10.09 ; db_xref "SPD:36/36B02" ; systematic_id "SPBC21B10.09" ; colour "7" ; GO "GO:0008521; acetyl-CoA transmembrane transporter activity
GO:0035348; acetyl-CoA transmembrane transport
GO:0016020; membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR220C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC21B10.09" ; product "acetyl-CoA transporter (predicted)" ;
chromosome2 GeneDB mRNA 216931 218360 . - . mRNA SPBC660.12c ; db_xref "SPD:18/18F12" ; systematic_id "SPBC660.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBC660.12c" ; product "aminotransferase (predicted)" ;
chromosome2 GeneDB mRNA 4318925 4320075 . + . mRNA SPBC543.10 ; systematic_id "SPBC543.10" ; colour "7" ; gene "SPBC543.10 ||| get1" ; Alias "get1" ; db_xref "SPD:31/31G05" ; GO "GO:0043529; GET complex
GO:0005783; endoplasmic reticulum
GO:0006874; calcium ion homeostasis
GO:0034620; cellular response to unfolded protein
GO:0045048; protein insertion into ER membrane
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=human chd5 ortholog; date=19700101 ||| term=disease associated, congenital heart disease; date=19700101 ||| term=orthologous to S. cerevisiae YGL020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "get1" ; product "GET complex subunit Get1 (predicted)" ;
chromosome2 GeneDB mRNA 3777723 3783390 . - . mRNA SPBC31F10.14c ; systematic_id "SPBC31F10.14c" ; colour "2" ; gene "hip3 ||| SPBC31F10.14c ||| hir3" ; Alias "hip3" ; db_xref "SPD:31/31A06" ; synonym "hir3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YJR140C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, HIRA Interacting Protein; cv=name_description; date=20100126 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|low_penetrance; db_xref=PMID:16428807; date=20100923" ; GO "GO:0000417; HIR complex
GO:0005634; nucleus
GO:0003714; transcription corepressor activity
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0006334; nucleosome assembly
GO:0007346; regulation of progression through mitotic cell cycle
GO:0007070; negative regulation of transcription from RNA polymerase II promoter, mitotic" ; primary_name "hip3" ; product "HIRA interacting protein Hip3" ;
chromosome2 GeneDB mRNA 2523946 2527084 . + . mRNA SPBC365.15 ; systematic_id "SPBC365.15" ; colour "2" ; gene "alp4 ||| SPBC365.15" ; Alias "alp4" ; db_xref "SPD:38/38C08" ; GO "GO:0000923; equatorial microtubule organizing center
GO:0000930; gamma-tubulin complex
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0060630; regulation of M/G1 transition of mitotic cell cycle
GO:0033205; cell cycle cytokinesis
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0007163; establishment and/or maintenance of cell polarity
GO:0033566; gamma tubulin complex localization
GO:0034631; microtubule anchoring at spindle pole body
GO:0007020; microtubule nucleation
GO:0007094; mitotic spindle checkpoint
GO:0030473; nuclear migration, microtubule- mediated
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, microtubule organization defects, long microtubules; qualifier=ts; db_xref=PMID:11080156; date=20100907 ||| term=phenotype, cut; qualifier=ts|conditional|in_presence_of_TBC; db_xref=PMID:11080156; date=20100907 ||| term=phenotype, spindle defects, monopolar spindle; qualifier=ts; db_xref=PMID:11080156; date=20100907 ||| term=orthologous to S. cerevisiae YHR172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "alp4" ; product "gamma tubulin complex Spc97/GCP2 subunit Alp4" ;
chromosome2 GeneDB mRNA 3731410 3732403 . - . mRNA SPBC13G1.03c ; systematic_id "SPBC13G1.03c" ; colour "2" ; gene "SPBC13G1.03c ||| pex14" ; Alias "pex14" ; db_xref "SPD:12/12G11" ; GO "GO:0005778; peroxisomal membrane
GO:0016558; protein import into peroxisome matrix
GO:0006625; protein targeting to peroxisome
GO:0005777; peroxisome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL153W; date=19700101 ||| term=disease associated, peroxisomal defects; date=20070627 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pex14" ; product "peroxisomal docking protein Pex14" ;
chromosome2 GeneDB mRNA 2780199 2780653 . - . mRNA SPBC685.07c ; systematic_id "SPBC685.07c" ; colour "2" ; gene "rpl2701 ||| rpl27-1 ||| SPBC685.07c" ; Alias "rpl2701" ; db_xref "SPD:41/41C02" ; synonym "rpl27-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR010W and YDR471W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl2701" ; product "60S ribosomal protein L27" ;
chromosome2 GeneDB mRNA 2289153 2290083 . - . mRNA SPBC16H5.06 ; systematic_id "SPBC16H5.06" ; colour "2" ; gene "rip1 ||| SPBC16H5.06" ; Alias "rip1" ; db_xref "SPD:31/31G11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0005743; mitochondrial inner membrane" ; primary_name "rip1" ; product "ubiquinol-cytochrome-c reductase complex subunit 5" ; EC_number "1.10.2.2" ;
chromosome2 GeneDB mRNA 1443980 1445800 . + . mRNA SPBP22H7.06 ; systematic_id "SPBP22H7.06" ; colour "7" ; gene "SPBP22H7.06" ; note "uridine kinase PRINTS false positive" ; obsolete_name "pi025 ||| SPACTOKYO_453.09c" ; db_xref "SPD:50/50C07" ; GO "GO:0046495; nicotinamide riboside metabolism
GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0050262; ribosylnicotinamide kinase activity
GO:0034356; NAD biosynthesis via nicotinamide riboside salvage pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL129W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "nicotinamide riboside kinase (predicted)" ;
chromosome2 GeneDB mRNA 4276864 4279656 . - . mRNA SPBC16A3.11 ; systematic_id "SPBC16A3.11" ; colour "2" ; gene "eso1 ||| SPBC16A3.11" ; Alias "eso1" ; db_xref "SPD:38/38F08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:10779336; date=20100727 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YDR419W (N-term); date=19700101 ||| term=orthologous to S. cerevisiae YFR027W (C-term); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20080807" ; GO "GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0003887; DNA-directed DNA polymerase activity
GO:0008415; acyltransferase activity
GO:0005515; protein binding
GO:0034182; regulation of maintenance of mitotic sister chromatid cohesion
GO:0006281; DNA repair
GO:0019985; translesion synthesis
GO:0034087; establishment of mitotic sister chromatid cohesion
GO:0006473; protein amino acid acetylation" ; primary_name "eso1" ; product "sister chromatid cohesion protein/DNA polymerase eta Eso1" ; EC_number "2.3.1.-" ;
chromosome2 GeneDB mRNA 3290915 3294051 . + . mRNA SPBC20F10.05 ; systematic_id "SPBC20F10.05" ; colour "7" ; gene "SPBC20F10.05 ||| nel2" ; db_xref "SPD:47/47G01" ; Alias "nrl1" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, NRde-Like; date=20101207 ||| term=human c14orf102 ortholog; date=20101210" ; GO "GO:0016246; RNA interference" ; primary_name "nrl1" ; product "NRDE-2 family, implicated in RNA interference" ; reserved_name "nrl1" ;
chromosome2 GeneDB mRNA 3458998 3461144 . - . mRNA SPBC2G2.13c ; db_xref "SPD:19/19G05" ; systematic_id "SPBC2G2.13c" ; colour "7" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR144C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004132; dCMP deaminase activity
GO:0006221; pyrimidine nucleotide biosynthetic process" ; gene "SPBC2G2.13c" ; product "deoxycytidylate deaminase (predicted)" ; EC_number "3.5.4.12" ;
chromosome2 GeneDB mRNA 2317534 2318520 . - . mRNA SPBC12D12.07c ; systematic_id "SPBC12D12.07c" ; colour "2" ; gene "trx2 ||| SPBC12D12.07c" ; Alias "trx2" ; db_xref "SPD:42/42B04" ; GO "GO:0005739; mitochondrion
GO:0034614; cellular response to reactive oxygen species
GO:0015035; protein disulfide oxidoreductase activity
GO:0042450; arginine biosynthetic process via ornithine
GO:0005515; protein binding
GO:0006467; protein thiol disulphide exchange
GO:0000050; urea cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for cysteine; db_xref=PMID:18849471; date=20100623 ||| term=phenotype, growth auxotrophic for carginine; db_xref=PMID:18849471; date=20100623 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YCR083W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "trx2" ; product "mitochondrial thioredoxin Trx2" ;
chromosome2 GeneDB mRNA 496550 497649 . + . mRNA SPBC1685.01 ; systematic_id "SPBC1685.01" ; colour "2" ; gene "pmp1 ||| SPBC1685.01" ; Alias "pmp1" ; db_xref "SPD:10/10H08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YIL113W and YNL053W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0005737; cytoplasm
GO:0017017; MAP kinase phosphatase activity
GO:0005515; protein binding
GO:0006470; protein amino acid dephosphorylation
GO:0010969; regulation of pheromone-dependent signal transduction involved in conjugation with cellualr fusion" ; primary_name "pmp1" ; product "dual-specificity MAP kinase phosphatase Pmp1" ; EC_number "3.1.3.48" ;
chromosome2 GeneDB mRNA 265374 266980 . + . mRNA SPBC800.08 ; systematic_id "SPBC800.08" ; colour "7" ; gene "gcd10 ||| SPBC800.08" ; Alias "gcd10" ; db_xref "SPD:24/24G06" ; GO "GO:0005634; nucleus
GO:0031515; tRNA (m1A) methyltransferase complex
GO:0030488; tRNA methylation
GO:0006413; translational initiation
GO:0016429; tRNA (adenine-N1-)-methyltransferase activity
GO:0000049; tRNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gcd10" ; product "tRNA (m1A) methyltransferase, translation initiation factor eIF-3 gamma subunit Gcd10 (predicted)" ;
chromosome2 GeneDB mRNA 4488324 4490085 . + . mRNA SPBPB2B2.13 ; systematic_id "SPBPB2B2.13" ; colour "2" ; gene "SPBPB2B2.13" ; Alias "gal1" ; db_xref "SPD:50/50H02" ; GO "GO:0046835; carbohydrate phosphorylation
GO:0004335; galactokinase activity
GO:0033499; galactose catabolic process via UDP- galactose
GO:0006012; galactose metabolism
GO:0006012; galactose metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, galactokinase deficiency with cataracts; date=20060821 ||| term=orthologous to S. cerevisiae YBR020W and YDR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gal1" ; product "galactokinase Gal1" ; EC_number "2.7.1.6" ;
chromosome2 GeneDB mRNA 967736 968767 . - . mRNA SPBP35G2.03c ; systematic_id "SPBP35G2.03c" ; colour "2" ; gene "sgo1 ||| SPBP35G2.03c" ; db_xref "SPD:15/15C08" ; Alias "sgo1" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0045144; meiotic sister chromatid segregation
GO:0045143; homologous chromosome segregation
GO:0005634; nucleus
GO:0000778; kinetochore
GO:0051177; meiotic sister chromatid cohesion
GO:0051754; meiotic sister chromatid cohesion, centromeric
GO:0019236; response to pheromone" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, ShuGOshin; cv=name_description; date=20090817 ||| term=human hsgo1 ortholog; date=19700101" ; primary_name "sgo1" ; product "inner centromere protein, shugoshin, Sgo1" ;
chromosome2 GeneDB mRNA 1366216 1368793 . - . mRNA SPBC8D2.05c ; systematic_id "SPBC8D2.05c" ; colour "2" ; gene "sfi1 ||| SPBC8D2.05c" ; Alias "sfi1" ; db_xref "SPD:33/33H04" ; GO "GO:0030474; spindle pole body duplication
GO:0005816; spindle pole body" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=centrin binding repeats; db_xref=PMID:14504268; date=19700101 ||| term=orthologous to S. cerevisiae YLL003W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "sfi1" ; product "spindle pole body protein Sfi1" ;
chromosome2 GeneDB mRNA 3687082 3688020 . + . mRNA SPBP8B7.26 ; db_xref "SPD:43/43D07" ; systematic_id "SPBP8B7.26" ; colour "8" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBP8B7.26" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2093406 2095934 . - . mRNA SPBC18E5.11c ; systematic_id "SPBC18E5.11c" ; colour "7" ; gene "edc3 ||| SPBC18E5.11c ||| SPBC23G7.01c" ; Alias "edc3" ; db_xref "SPD:23/23E02" ; synonym "SPBC23G7.01c" ; GO "GO:0031087; deadenylation-independent decapping
GO:0000932; cytoplasmic mRNA processing body" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "edc3" ; product "enhancer of mRNA decapping Edc3 (predicted)" ;
chromosome2 GeneDB mRNA 523887 524240 . - . mRNA SPBC1685.12c ; db_xref "SPD:02/02C11" ; systematic_id "SPBC1685.12c" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPBC1685.12c" ; product "dubious" ;
chromosome2 GeneDB mRNA 599402 600502 . - . mRNA SPBC839.03c ; db_xref "SPD:09/09C09" ; systematic_id "SPBC839.03c" ; colour "7" ; GO "GO:0045116; protein neddylation
GO:0051443; positive regulation of ubiquitin ligase activity
GO:0008047; enzyme activator activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC839.03c" ; product "neddylation protein Dcn1 (predicted)" ;
chromosome2 GeneDB mRNA 3638440 3640941 . + . mRNA SPBP8B7.04 ; systematic_id "SPBP8B7.04" ; colour "8" ; gene "SPBP8B7.04 ||| mug45" ; db_xref "SPD:29/29A10" ; Alias "mug45" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug45" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2897837 2899541 . - . mRNA SPBP4H10.14c ; db_xref "SPD:12/12H11" ; systematic_id "SPBP4H10.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBP4H10.14c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1873513 1875657 . + . mRNA SPBC3H7.05c ; db_xref "SPD:16/16E12" ; systematic_id "SPBC3H7.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC3H7.05c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3482870 3487433 . - . mRNA SPBC1718.07c ; systematic_id "SPBC1718.07c" ; colour "2" ; gene "zfs1 ||| moc4 ||| SPBC1718.07c" ; Alias "zfs1" ; db_xref "SPD:32/32F07" ; synonym "moc4" ; GO "GO:0005634; nucleus
GO:0017091; AU-rich element binding
GO:0005515; protein binding
GO:0006402; mRNA catabolic process
GO:0007093; mitotic checkpoint
GO:0007094; mitotic spindle checkpoint
GO:0045839; negative regulation of mitosis
GO:0031030; negative regulation of septation initiation signaling
GO:0000750; pheromone-dependent signal transduction during conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10462526; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=gene expression, expressed in response to nitrogen starvation; cv=gene_ex; db_xref=PMID:8534915; date=19700101 ||| term=orthologous to S. cerevisiae YLR136C and YDR151C; date=19700101 ||| term=target is azr1; db_xref=PMID:18042546; date=20071210 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Multicopy suppressor of Overexpressed Cyr1; date=20100705" ; primary_name "zfs1" ; product "CCCH tandem zinc finger protein, human Tristetraprolin homolog Zfs1, involved in mRNA catabolism" ;
chromosome2 GeneDB mRNA 1510206 1513564 . + . mRNA SPBC83.01 ; systematic_id "SPBC83.01" ; colour "2" ; gene "ucp8 ||| SPBC83.01" ; Alias "ucp8" ; db_xref "SPD:29/29F01" ; GO "GO:0043130; ubiquitin binding
GO:0005509; calcium ion binding
GO:0006897; endocytosis
GO:0000147; actin cortical patch assembly
GO:0030479; actin cortical patch
GO:0006886; intracellular protein transport
GO:0006898; receptor-mediated endocytosis
GO:0031593; polyubiquitin binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=UBA domain protein; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=EH domains; date=19700101 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YBL047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ucp8" ; product "UBA/EH/EF hand domain protein Ucp8" ;
chromosome2 GeneDB mRNA 3050572 3051671 . + . mRNA SPBC13E7.06 ; systematic_id "SPBC13E7.06" ; colour "2" ; gene "SPBC13E7.06 ||| msd1 ||| mug172" ; Alias "msd1" ; db_xref "SPD:14/14E09" ; synonym "mug172" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0034631; microtubule anchoring at spindle pole body
GO:0031577; spindle checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Mitotic Spindle Disanchored; cv=name_description; date=20070329 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "msd1" ; product "mitotic-spindle disanchored Msd1" ;
chromosome2 GeneDB mRNA 2892170 2894815 . - . mRNA SPBP4H10.11c ; systematic_id "SPBP4H10.11c" ; colour "2" ; gene "SPBP4H10.11c ||| lcf2" ; Alias "lcf2" ; db_xref "SPD:46/46E01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR317W and YIL009W and YMR246W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human ACSL3 and ACSL4 ortholog; date=20100217 ||| term=misc, substrate myristic acid preferring; db_xref=PMID:18071249; date=20100217" ; GO "GO:0006499; N-terminal protein myristoylation
GO:0005737; cytoplasm
GO:0004467; long-chain-fatty-acid-CoA ligase activity
GO:0070317; negative regulation of G1 to G0 transition
GO:0001676; long-chain fatty acid metabolic process" ; primary_name "lcf2" ; product "long-chain-fatty-acid-CoA ligase" ; EC_number "6.2.1.3" ;
chromosome2 GeneDB mRNA 2284367 2286396 . + . mRNA SPBC16H5.08c ; db_xref "SPD:27/27B09" ; systematic_id "SPBC16H5.08c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0042254; ribosome biogenesis and assembly
GO:0000056; ribosomal small subunit export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YER036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC16H5.08c" ; product "ribosome biogenesis ATPase, Arb family ABCF2- like (predicted)" ;
chromosome2 GeneDB mRNA 1690143 1691084 . + . mRNA SPBC19C2.08 ; systematic_id "SPBC19C2.08" ; colour "7" ; gene "SPBC19C2.08 ||| prp38" ; Alias "prp38" ; db_xref "SPD:10/10G02" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR075C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp38" ; product "U4/U6 x U5 tri-snRNP complex subunit Prp38 (predicted)" ;
chromosome2 GeneDB mRNA 1660723 1662644 . + . mRNA SPBC21B10.06c ; systematic_id "SPBC21B10.06c" ; colour "7" ; gene "SPBC21B10.06c" ; Alias "inp2" ; db_xref "SPD:24/24G08" ; GO "GO:0045033; peroxisome inheritance
GO:0005779; integral to peroxisomal membrane
GO:0017022; myosin binding
GO:0030048; actin filament-based movement
GO:0043495; protein anchor" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20091018 ||| term=species distribution, conserved in Vertebrates; date=20091018 ||| term=species distribution, conserved in Metazoa; date=20091018 ||| term=species distribution, conserved in Eukaryotes only; date=20091018 ||| term=orthologous to S. cerevisiae YMR163C; date=20091018 ||| term=name description, INheritance of Peroxisomes; cv=name_description; date=20091018 ||| term=vezatin family; db_xref=Pfam:PF12632; date=20091020" ; primary_name "inp2" ; product "myosin binding vezatin family protein involved in peroxisome inheritance Inp2 (predicted)" ;
chromosome2 GeneDB mRNA 2916263 2918785 . + . mRNA SPBC1703.02 ; systematic_id "SPBC1703.02" ; colour "2" ; gene "rsc9 ||| SPBC1703.02" ; note "YML127W is similar at the C-terminus but has no ARID domain" ; Alias "rsc9" ; db_xref "SPD:28/28F01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ARID domain; date=19700101 ||| term=orthologous to S. cerevisiae YML127W (C-term); date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0016586; RSC complex
GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0006338; chromatin remodeling
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0042790; transcription of nuclear rRNA large RNA polymerase I transcript" ; primary_name "rsc9" ; product "RSC complex subunit Rsc9" ;
chromosome2 GeneDB mRNA 1965390 1969387 . + . mRNA SPBC1E8.04 ; systematic_id "SPBC1E8.04" ; colour "13" ; gene "Tf2-10-pseudo ||| SPBC1E8.04" ; note "frameshifted LTR retrotransposon polyprotein" ; Alias "Tf2-10-pseudo" ; obsolete_name "Tf-pseudoII" ; pseudo "_no_value" ; synonym "SPBC1E8.04c" ; controlled_curation "term=tf2-type transposon; date=19700101 ||| term=warning, frameshifted; cv=warning; date=19700101" ; primary_name "Tf2-10-pseudo" ; product "retrotransposable element: pseudo" ;
chromosome2 GeneDB mRNA 4466651 4467590 . + . mRNA SPBPB2B2.05 ; db_xref "SPD:41/41F06" ; systematic_id "SPBPB2B2.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible horizontal transfer; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100902" ; colour "10" ; gene "SPBPB2B2.05" ; product "peptidase family C26 protein" ;
chromosome2 GeneDB mRNA 1372591 1374935 . - . mRNA SPBC8D2.07c ; systematic_id "SPBC8D2.07c" ; colour "7" ; gene "sfc9 ||| SPBC8D2.07c" ; Alias "sfc9" ; obsolete_name "SPBC8D2.08c" ; db_xref "SPD:39/39F11" ; GO "GO:0000127; transcription factor TFIIIC complex
GO:0006383; transcription from RNA polymerase III promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=zinc finger protein; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090729 ||| term=human GTF3C4 ortholog; date=20101021" ; primary_name "sfc9" ; product "transcription factor TFIIIC complex subunit Sfc9 (predicted)" ;
chromosome2 GeneDB mRNA 2686413 2688005 . - . mRNA SPBC3E7.15c ; systematic_id "SPBC3E7.15c" ; colour "2" ; gene "lac1 ||| SPBC3E7.15c ||| SPBC4F6.02c ||| mug83" ; Alias "lac1" ; db_xref "SPD:20/20F10" ; synonym "SPBC4F6.02c ||| mug83" ; GO "GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0050291; sphingosine N-acyltransferase activity
GO:0070072; vacuolar proton transporting V-type ATPase complex assembly
GO:0046513; ceramide biosynthesis
GO:0007009; plasma membrane organization and biogenesis
GO:0071277; cellular response to calcium ion
GO:0042493; response to drug
GO:0042493; response to drug
GO:0042493; response to drug
GO:0042493; response to drug
GO:0034605; cellular response to heat
GO:0009636; response to toxin
GO:0009636; response to toxin
GO:0071294; cellular response to zinc ion
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL003C and YKL008C; date=19700101 ||| term=phenotype, resistance to drugs; qualifier=overexpression; cv=phenotype; db_xref=PMID:18441123; date=20080731 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, localization defects, sterol distribution defects; cv=phenotype; db_xref=PMID:18441123; date=20091215" ; primary_name "lac1" ; product "sphingosine N-acyltransferase Lac1" ;
chromosome2 GeneDB mRNA 454230 456312 . + . mRNA SPBC428.07 ; systematic_id "SPBC428.07" ; colour "2" ; db_xref "SPD:27/27G05" ; Alias "meu6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, NLS; cv=sequence_feature; qualifier=predicted; db_xref=PMID:11376151; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=name description, Meiotic Expression Upregulated; db_xref=PMID:11376151; cv=name_description; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20080908" ; GO "GO:0045132; meiotic chromosome segregation
GO:0007126; meiosis" ; primary_name "meu6" ; product "meiotic chromosome segregation protein Meu6" ;
chromosome2 GeneDB mRNA 2391060 2392114 . - . mRNA SPBC36B7.05c ; db_xref "SPD:32/32A02" ; systematic_id "SPBC36B7.05c" ; colour "10" ; GO "GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0005770; late endosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20070129 ||| term=zinc finger protein; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=orthologous to S. cerevisiae YDR313C; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=20080528 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC36B7.05c" ; product "ubiquitin-protein ligase E/phosphatidylinositol(3)-phosphate binding protein (predicted)" ;
chromosome2 GeneDB mRNA 4015268 4018845 . - . mRNA SPBC3B9.16c ; systematic_id "SPBC3B9.16c" ; colour "2" ; gene "nup120 ||| SPBC3B9.16c" ; Alias "nup120" ; db_xref "SPD:30/30E02" ; GO "GO:0031080; Nup107-160 complex
; nuclear membrane
GO:0005643; nuclear pore
GO:0005643; nuclear pore
GO:0005515; protein binding
GO:0051301; cell division
GO:0000070; mitotic sister chromatid segregation
GO:0031081; nuclear pore distribution
GO:0006913; nucleocytoplasmic transport
GO:0016973; poly(A)+ mRNA export from nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15226438; date=19700101 ||| term=orthologous to S. cerevisiae YKL057C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "nup120" ; product "nucleoporin Nup120" ;
chromosome2 GeneDB mRNA 4157821 4159425 . - . mRNA SPBC14F5.04c ; systematic_id "SPBC14F5.04c" ; colour "7" ; gene "pgk1 ||| SPBC14F5.04c" ; Alias "pgk1" ; db_xref "SPD:32/32F12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005829; cytosol
GO:0006094; gluconeogenesis
GO:0006096; glycolysis
GO:0004618; phosphoglycerate kinase activity
GO:0005524; ATP binding" ; primary_name "pgk1" ; product "phosphoglycerate kinase Pgk1 (predicted)" ; EC_number "2.7.2.3" ;
chromosome2 GeneDB mRNA 3387606 3390797 . + . mRNA SPBC3B8.04c ; db_xref "SPD:29/29F04" ; systematic_id "SPBC3B8.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNR013C and YCR037C and YJL198W; date=19700101 ||| term=SPX domain protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; colour "7" ; gene "SPBC3B8.04c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 2385068 2386884 . + . mRNA SPBC36B7.02 ; db_xref "SPD:32/32D08" ; systematic_id "SPBC36B7.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC36B7.02" ; product "Svf1 family protein Svf2" ;
chromosome2 GeneDB mRNA 35112 36589 . + . mRNA SPBC1348.12 ; synonym "SPAC1348.12" ; systematic_id "SPBC1348.12" ; controlled_curation "term=zinc finger protein; date=19700101 ||| term=warning, previously annotated as pseudogene; cv=warning; date=20091107 ||| term=warning, gene structure updated; cv=warning; date=20091108 ||| term=warning, gene structure may be incorrect; cv=warning; date=20091108" ; colour "10" ; gene "SPBC1348.12" ; product "zinc finger protein" ; note "forced splicing to give coding product, non canonical splice signals, may be multiply frameshifted" ;
chromosome2 GeneDB mRNA 1042210 1044075 . - . mRNA SPBC337.07c ; db_xref "SPD:34/34H05" ; systematic_id "SPBC337.07c" ; colour "7" ; GO "GO:0004181; metallocarboxypeptidase activity
GO:0009272; fungal-type cell wall assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR132C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPBC337.07c" ; product "carboxypeptidase (predicted)" ;
chromosome2 GeneDB mRNA 4088695 4091220 . - . mRNA SPBC56F2.11 ; systematic_id "SPBC56F2.11" ; colour "2" ; gene "met6 ||| SPBC56F2.11" ; Alias "met6" ; db_xref "SPD:33/33A09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for methionine; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=orthologous to S. cerevisiae YNL277W; date=19700101 ||| term=experimental tools, selectable marker, amino acid auxotroph; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004414; homoserine O-acetyltransferase activity
GO:0009086; methionine biosynthetic process
GO:0009092; homoserine metabolic process" ; primary_name "met6" ; product "homoserine O-acetyltransferase Met6" ; EC_number "2.3.1.31" ;
chromosome2 GeneDB mRNA 3204448 3206768 . + . mRNA SPBC776.14 ; systematic_id "SPBC776.14" ; colour "2" ; gene "plh1 ||| SPBC776.14" ; Alias "plh1" ; db_xref "SPD:49/49E01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR008W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pombe LRO 1 Homolog; db_xref=PMID:12963726; date=20100607" ; GO "GO:0046027; phospholipid:diacylglycerol acyltransferase activity
GO:0019432; triacylglycerol biosynthesis
GO:0046339; diacylglycerol metabolism
GO:0019915; sequestering of lipid
GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplarmic reticulum membrane" ; primary_name "plh1" ; product "phospholipid-diacylglycerol acyltransferase Plh1" ; EC_number "2.3.1.158" ;
chromosome2 GeneDB mRNA 3153502 3153876 . + . mRNA SPBC405.07 ; systematic_id "SPBC405.07" ; colour "2" ; gene "rpl3602 ||| rpl36-2 ||| rpl36 ||| SPBC405.07" ; Alias "rpl3602" ; db_xref "SPD:31/31C11" ; synonym "rpl36-2 ||| rpl36" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR194W and YPL249C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl3602" ; product "60S ribosomal protein L36" ;
chromosome2 GeneDB mRNA 2781958 2783598 . + . mRNA SPBC685.09 ; systematic_id "SPBC685.09" ; colour "2" ; gene "orc2 ||| orp2 ||| SPBC685.09" ; Alias "orc2" ; db_xref "SPD:33/33C05" ; synonym "orp2" ; GO "GO:0003688; DNA replication origin binding
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0005656; pre-replicative complex
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:8552194; date=20100708 ||| term=orthologous to S. cerevisiae YBR060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "orc2" ; product "origin recognition complex subunit Orc2" ;
chromosome2 GeneDB mRNA 2307408 2309574 . + . mRNA SPBC12D12.03 ; systematic_id "SPBC12D12.03" ; colour "2" ; gene "cct1 ||| SPBC12D12.03" ; Alias "cct1" ; db_xref "SPD:27/27D06" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cct1" ; product "chaperonin-containing T-complex alpha subunit Cct1" ;
chromosome2 GeneDB mRNA 1920541 1921745 . - . mRNA SPBC16E9.03c ; systematic_id "SPBC16E9.03c" ; colour "7" ; gene "SPBC16E9.03c" ; Alias "coa1" ; db_xref "SPD:09/09B10" ; GO "GO:0031303; integral to mitochondrial inner membrane
GO:0033617; mitochondrial respiratory chain complex IV assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL157C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20080202 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=human C7orf44 ortholog; date=20100107" ; primary_name "coa1" ; product "mitochondrial inner membrane protein involved in respiratory chain complex IV assembly Coa1 (predicted)" ;
chromosome2 GeneDB mRNA 2496844 2497768 . - . mRNA SPBC365.20c ; systematic_id "SPBC365.20c" ; colour "7" ; gene "SPBC557.06c ||| SPBC365.20c ||| pnc1" ; Alias "pnc1" ; db_xref "SPD:50/50B10" ; synonym "SPBC557.06c" ; GO "GO:0008936; nicotinamidase activity
GO:0019358; nicotinate nucleotide salvage
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL037C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; primary_name "pnc1" ; product "nicotinamidase Pnc1 (predicted)" ; reserved_name "pnc1" ;
chromosome2 GeneDB mRNA 12176 12613 . + . mRNA SPBC1348.04 ; obsolete_name "SPAC1348.04" ; db_xref "SPD:51/51B02" ; systematic_id "SPBC1348.04" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC750.03C and SPAC977.03; date=19700101 ||| term=warning, possible horizontal transfer; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100902" ; gene "SPBC1348.04" ; product "methyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 3636475 3637646 . - . mRNA SPBP8B7.03c ; systematic_id "SPBP8B7.03c" ; colour "7" ; gene "rpl402 ||| rpl4-2 ||| rpl4 ||| SPBP8B7.03c" ; Alias "rpl402" ; db_xref "SPD:17/17B03" ; synonym "rpl4-2 ||| rpl4" ; GO "GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, acetylated; qualifier=predicted; cv=pt_mod; date=20060518 ||| term=orthologous to S. cerevisiae YBR031W and YDR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl402" ; product "60S ribosomal protein L2 (predicted)" ;
chromosome2 GeneDB mRNA 732998 734700 . - . mRNA SPBC119.09c ; db_xref "SPD:05/05G10" ; systematic_id "SPBC119.09c" ; colour "7" ; GO "GO:0034620; cellular response to unfolded protein
GO:0005783; endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR038W and YLR350W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC119.09c" ; product "ORMDL family protein (predicted)" ;
chromosome2 GeneDB mRNA 4364016 4365176 . + . mRNA SPBC1539.02 ; db_xref "SPD:18/18D02" ; systematic_id "SPBC1539.02" ; colour "10" ; GO "GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080925 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1539.02" ; product "conserved eukaryotic nuclear protein implicated in meiotic chromosome segregation" ;
chromosome2 GeneDB mRNA 2422691 2424395 . + . mRNA SPBC21D10.11c ; systematic_id "SPBC21D10.11c" ; colour "7" ; gene "nfs1 ||| SPBC21D10.11c" ; Alias "nfs1" ; db_xref "SPD:24/24C05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target of Icp55; qualifier=predicted; evidence=ISS; date=20090903" ; GO "GO:0005759; mitochondrial matrix
GO:0016226; iron-sulfur cluster assembly
GO:0034227; tRNA thio-modification
GO:0031071; cysteine desulfurase activity
GO:0002098; tRNA wobble uridine modification
GO:0006879; cellular iron ion homeostasis" ; primary_name "nfs1" ; product "mitochondrial cysteine desulfurase Nfs1 (predicted)" ; EC_number "4.4.1.-" ;
chromosome2 GeneDB mRNA 1686768 1687205 . - . mRNA SPBC19C2.06c ; systematic_id "SPBC19C2.06c" ; colour "8" ; gene "SPBC19C2.06c ||| mug124" ; db_xref "SPD:03/03G05" ; Alias "mug124" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug124" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2843002 2845579 . + . mRNA SPBC19C7.11 ; db_xref "SPD:46/46H06" ; systematic_id "SPBC19C7.11" ; colour "7" ; GO "GO:0005247; voltage-gated chloride channel activity
GO:0030003; cation homeostasis
GO:0005794; Golgi apparatus
GO:0005768; endosome
GO:0006821; chloride transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hypercalciuric nephrolithiasis; date=20060920 ||| term=orthologous to S. cerevisiae YJR040W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC19C7.11" ; product "ClC chloride channel (predicted)" ;
chromosome2 GeneDB mRNA 3803461 3805005 . - . mRNA SPBC21C3.04c ; db_xref "SPD:01/01G09" ; systematic_id "SPBC21C3.04c" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR115W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC21C3.04c" ; product "mitochondrial ribosomal protein subunit L34 (predicted)" ;
chromosome2 GeneDB mRNA 4349614 4351207 . + . mRNA SPBC16C6.10 ; systematic_id "SPBC16C6.10" ; colour "2" ; gene "chp2 ||| SPBC16C6.10" ; Alias "chp2" ; db_xref "SPD:32/32F02" ; GO "GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0000790; nuclear chromatin
GO:0005721; centric heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0031493; nucleosomal histone binding
; nucleosomal histone binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=chromodomain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CBX1 and CBX3 and CBX5 ortholog; qualifier=predicted; date=20100826" ; primary_name "chp2" ; product "chromodomain protein 2" ;
chromosome2 GeneDB mRNA 3535394 3536714 . - . mRNA SPBC1105.15c ; systematic_id "SPBC1105.15c" ; colour "7" ; gene "htd2 ||| SPBC1105.15c" ; Alias "htd2" ; db_xref "SPD:12/12D11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR067W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0005739; mitochondrion
GO:0019171; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
GO:0006633; fatty acid biosynthesis" ; primary_name "htd2" ; product "3-hydroxyacyl-ACP dehydratase Htd2 (predicted)" ; EC_number "4.2.1.-" ;
chromosome2 GeneDB mRNA 3990515 3991563 . + . mRNA SPBC3B9.01 ; db_xref "SPD:11/11E10" ; systematic_id "SPBC3B9.01" ; colour "7" ; GO "GO:0005829; cytosol
GO:0006412; protein biosynthesis
GO:0000774; adenyl-nucleotide exchange factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR101C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC3B9.01" ; product "Hsp70 nucleotide exchange factor (predicted)" ;
chromosome2 GeneDB mRNA 3844161 3849441 . - . mRNA SPBC23E6.04c ; systematic_id "SPBC23E6.04c" ; colour "7" ; gene "utp10 ||| SPBC23E6.04c" ; Alias "utp10" ; db_xref "SPD:31/31A08" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL109C; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "utp10" ; product "U3 snoRNP-associated protein Utp10 (predicted)" ;
chromosome2 GeneDB mRNA 2181630 2184869 . - . mRNA SPBC17G9.08c ; systematic_id "SPBC17G9.08c" ; colour "2" ; gene "cnt5 ||| csx2 ||| SPBC17G9.08c" ; Alias "cnt5" ; db_xref "SPD:38/38A02" ; synonym "csx2" ; GO "GO:0005096; GTPase activator activity
GO:0043087; regulation of GTPase activity
GO:0007264; small GTPase mediated signal transduction
GO:0071276; cellular response to cadmium ion
GO:0046685; cellular response to arsenic
GO:0005543; phospholipid binding
GO:0005886; plasma membrane
GO:0005829; cytosol" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=similar to S. pombe SPAC26A3.10; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sensitive to arsenic; qualifier=deletion; cv=phenotype; db_xref=PMID:19076239; date=20090108 ||| term=phenotype, sensitive to cadmium; qualifier=deletion; cv=phenotype; db_xref=PMID:19076239; date=20090108 ||| term=centaurin ADOP ribosylation factor GTPase activating protein family; db_xref=PMID:19076239; date=20090108 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cnt5" ; product "Centaurin 5" ;
chromosome2 GeneDB mRNA 1382124 1383867 . + . mRNA SPBC8D2.13 ; systematic_id "SPBC8D2.13" ; colour "7" ; gene "shq1 ||| SPBC8D2.13" ; Alias "shq1" ; obsolete_name "pI052" ; db_xref "SPD:33/33C02" ; GO "GO:0005730; nucleolus
GO:0000493; box H/ACA snoRNP assembly
GO:0006396; RNA processing" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL104C; date=19700101 ||| term=CS domain; date=20071105 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "shq1" ; product "box H/ACA snoRNP assembly protein Shq1 (predicted)" ;
chromosome2 GeneDB mRNA 2372072 2373131 . - . mRNA SPBC19G7.18c ; systematic_id "SPBC19G7.18c" ; colour "8" ; gene "SPBC19G7.18c" ; note "SPBC19G7.12c removed because sequence similarity supports SPBC19G7.18c, 20040914" ; db_xref "SPD:52/52A06" ; synonym "SPBC19G7.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 304713 306692 . - . mRNA SPBC1773.11c ; systematic_id "SPBC1773.11c" ; colour "7" ; gene "SPBC1773.11c ||| mug89" ; Alias "mug89" ; db_xref "SPD:19/19A01" ; GO "GO:0016021; integral to membrane
GO:0005770; late endosome
GO:0005886; plasma membrane
GO:0007166; cell surface receptor linked signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR094W and YNL323W and YNR048W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug89" ; product "CDC50 domain protein, implicated in signal transduction (predicted)" ;
chromosome2 GeneDB mRNA 2945136 2947120 . - . mRNA SPBC1703.15c ; systematic_id "SPBC1703.15c" ; colour "2" ; gene "vps33 ||| SPBC1703.15c ||| SPBC2A9.01c" ; Alias "vps33" ; db_xref "SPD:37/37A05" ; synonym "SPBC2A9.01c" ; GO "GO:0030897; HOPS complex
GO:0006895; Golgi to endosome transport
GO:0045324; late endosome to vacuole transport
GO:0006623; protein targeting to vacuole
GO:0042144; vacuole fusion, non-autophagic
GO:0007033; vacuole organization and biogenesis
GO:0048278; vesicle docking
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR396C; date=19700101 ||| term=disease associated, ARC syndrome; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps33" ; product "vacuolar sorting protein Vps33" ;
chromosome2 GeneDB mRNA 1869252 1869843 . + . mRNA SPBC3H7.08c ; db_xref "SPD:06/06E03" ; systematic_id "SPBC3H7.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC3H7.08c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 4103258 4103827 . - . mRNA SPBC56F2.15 ; Alias "tam13" ; systematic_id "SPBC56F2.15" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "tam13" ; product "sequence orphan" ; note "new gene; conserved in japonicus, but the japonicus gene is about 500 amino acids longer...possibly a gene merge in japoinicus as this does not splice to adjacent gene" ;
chromosome2 GeneDB mRNA 212375 214899 . + . mRNA SPBC660.10 ; db_xref "SPD:29/29C01" ; systematic_id "SPBC660.10" ; colour "7" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation
GO:0005739; mitochondrion
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL102W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC660.10" ; product "mitochondrial translation elongation factor G (predicted)" ;
chromosome2 GeneDB mRNA 4365346 4366829 . - . mRNA SPBC1539.03c ; db_xref "SPD:32/32H10" ; systematic_id "SPBC1539.03c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006526; arginine biosynthesis
GO:0004056; argininosuccinate lyase activity
GO:0005829; cytosol
GO:0000050; urea cycle" ; gene "SPBC1539.03c" ; product "argininosuccinate lyase (predicted)" ; EC_number "4.3.2.1" ;
chromosome2 GeneDB mRNA 4315843 4318755 . + . mRNA SPBC543.09 ; db_xref "SPD:33/33G06" ; systematic_id "SPBC543.09" ; colour "7" ; GO "GO:0005745; m-AAA complex
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0008237; metallopeptidase activity
GO:0033108; mitochondrial respiratory chain complex assembly
GO:0045041; protein import into mitochondrial intermembrane space
GO:0006465; signal peptide processing
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YMR089C and YER017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, dominent ataxia SCA28; date=20100420" ; gene "SPBC543.09" ; product "mitochondrial m-AAA protease (predicted)" ;
chromosome2 GeneDB mRNA 3520268 3522574 . + . mRNA SPBC1105.08 ; db_xref "SPD:46/46D04" ; systematic_id "SPBC1105.08" ; colour "10" ; GO "GO:0010008; endosome membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR083C and YDR107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1105.08" ; product "EMP70 family" ;
chromosome2 GeneDB mRNA 3065905 3067507 . - . mRNA SPBC30D10.15 ; db_xref "SPD:25/25B07" ; systematic_id "SPBC30D10.15" ; colour "7" ; GO "GO:0005654; nucleoplasm
GO:0003723; RNA binding
GO:0000493; box H/ACA snoRNP assembly
GO:0006364; rRNA processing" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL124W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC30D10.15" ; product "snoRNP assembly factor Naf1 (predicted)" ;
chromosome2 GeneDB mRNA 2589004 2590880 . - . mRNA SPBC2G5.06c ; systematic_id "SPBC2G5.06c" ; colour "2" ; gene "hmt2 ||| cad1 ||| SPBC2G5.06c" ; Alias "hmt2" ; db_xref "SPD:40/40E02" ; synonym "cad1" ; GO "GO:0016672; oxidoreductase activity, acting on sulfur group of donors, quinone or similar compound as acceptor
GO:0005739; mitochondrion
GO:0071276; cellular response to cadmium ion
GO:0006876; cadmium ion homeostasis
GO:0042762; regulation of sulfur metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hmt2" ; product "sulfide-quinone oxidoreductase" ;
chromosome2 GeneDB mRNA 2662663 2664173 . - . mRNA SPBC3E7.04c ; systematic_id "SPBC3E7.04c" ; GO "GO:0005085; guanine-nucleotide exchange factor activity" ; controlled_curation "term=warning, gene structure updated; cv=warning; date=20091108 ||| term=warning, previously annotated as pseudogene; cv=warning; date=20091108 ||| term=warning, gene structure may be incorrect; cv=warning; date=20091108 ||| term=species distribution, conserved in Eukaryotes; date=20091108 ||| term=species distribution, conserved in Eukaryotes only; date=20091108 ||| term=species distribution, conserved in Vertebrates; date=20091108 ||| term=species distribution, conserved in Metazoa; date=20091108 ||| term=species distribution, conserved in Fungi; date=20091108 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091108" ; colour "10" ; gene "SPBC3E7.04c" ; product "Ric8 family guanine nulceotide exchange factor synembryn family" ;
chromosome2 GeneDB mRNA 4404447 4405817 . + . mRNA SPBC1289.11 ; systematic_id "SPBC1289.11" ; colour "2" ; gene "spf38 ||| SPBC1289.11 ||| cwf17" ; Alias "spf38" ; db_xref "SPD:20/20B01" ; synonym "cwf17" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spf38" ; product "splicing factor Spf38" ;
chromosome2 GeneDB mRNA 3935515 3937718 . - . mRNA SPBC1677.03c ; db_xref "KEGG:MAP00260; ||| SPD:36/36E02" ; systematic_id "SPBC1677.03c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004794; threonine ammonia-lyase activity
GO:0005739; mitochondrion
GO:0009097; isoleucine biosynthesis" ; gene "SPBC1677.03c" ; product "mitochondrial threonine ammonia-lyase (predicted)" ; EC_number "4.3.1.19" ;
chromosome2 GeneDB mRNA 741905 743721 . - . mRNA SPBC119.13c ; systematic_id "SPBC119.13c" ; colour "2" ; gene "prp31 ||| SPBC119.13c" ; Alias "prp31" ; db_xref "SPD:33/33B09" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000244; assembly of spliceosomal tri-snRNP
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10871341; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:10871341; date=20100708 ||| term=orthologous to S. cerevisiae YGR091W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp31" ; product "U4/U6 x U5 tri-snRNP complex subunit Prp31" ;
chromosome2 GeneDB mRNA 2707971 2709832 . + . mRNA SPBC4F6.10 ; systematic_id "SPBC4F6.10" ; colour "7" ; gene "vps901 ||| vps9a ||| SPBC4F6.10" ; Alias "vps901" ; db_xref "SPD:25/25H02" ; synonym "vps9a" ; GO "GO:0006623; protein targeting to vacuole
GO:0005829; cytosol
GO:0005085; guanyl-nucleotide exchange factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CUE domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YML097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, frameshifted; date=20090819 ||| term=warning, sequence error in genomic data; date=20090819 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "vps901" ; product "guanyl-nucleotide exchange factor Vps901 (predicted)" ;
chromosome2 GeneDB mRNA 2709848 2711551 . - . mRNA SPBC4F6.11c ; db_xref "SPD:34/34F03" ; systematic_id "SPBC4F6.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPBC4F6.11c" ; product "asparagine synthase (predicted)" ;
chromosome2 GeneDB mRNA 2981062 2982375 . + . mRNA SPBC2D10.09 ; db_xref "SPD:22/22D03" ; systematic_id "SPBC2D10.09" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0003860; 3-hydroxyisobutyryl-CoA hydrolase activity
GO:0009083; branched chain amino acid catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC2D10.09" ; product "3-hydroxyisobutyryl-CoA hydrolase (predicted)" ;
chromosome2 GeneDB mRNA 1328758 1330738 . + . mRNA SPBC27B12.05 ; db_xref "SPD:33/33A01" ; systematic_id "SPBC27B12.05" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20080108 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20090927 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; gene "SPBC27B12.05" ; product "WD repeat protein" ; note "additional C terminal exon to D1022301" ;
chromosome2 GeneDB mRNA 376323 376983 . - . mRNA SPBC106.02c ; systematic_id "SPBC106.02c" ; colour "2" ; gene "srx1 ||| SPBC106.02c" ; Alias "srx1" ; db_xref "SPD:02/02F09" ; GO "GO:0034599; cellular response to oxidative stress
GO:0032542; sulfiredoxin activity
GO:0005515; protein binding
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0034613; cellular protein localization
GO:0070301; cellular response to hydrogen peroxide" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to H202; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=orthologous to S. cerevisiae YKL086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=gene expression, transcriptionally regulated by Sty1; evidence=IDA; db_xref=PMID:15824112; cv=gene_ex; date=20050419 ||| term=target is Tpx1; db_xref=PMID:15824112; date=20100825" ; primary_name "srx1" ; product "sulfiredoxin" ;
chromosome2 GeneDB mRNA 873305 876055 . - . mRNA SPBC713.04c ; db_xref "SPD:49/49E09" ; systematic_id "SPBC713.04c" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCR057C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC713.04c" ; product "U3 snoRNP-associated protein Utp1 (predicted)" ;
chromosome2 GeneDB mRNA 501281 502380 . + . mRNA SPBC1685.16 ; systematic_id "SPBC1685.16" ; colour "7" ; gene "SPBC1685.16 ||| vma9" ; note "found in directed search for VMA9 ortholog, possibly still missing a bit at the N-term July 18th 2004" ; Alias "vma9" ; db_xref "SPD:51/51B04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL005W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000220; hydrogen-transporting ATPase V0 domain
GO:0000329; vacuolar membrane
GO:0007035; vacuolar acidification
GO:0042625; ATPase activity, coupled to transmembrane movement of ions
GO:0015991; ATP hydrolysis coupled proton transport
GO:0046961; hydrogen ion transporting ATPase activity, rotational mechanism" ; primary_name "vma9" ; product "V-type ATPase V0 subunit e (predicted)" ;
chromosome2 GeneDB mRNA 793261 795057 . + . mRNA SPBC530.04 ; systematic_id "SPBC530.04" ; colour "2" ; gene "mod5 ||| SPBC530.04" ; Alias "mod5" ; db_xref "SPD:36/36D07" ; GO "GO:0051285; cell cortex of cell tip
GO:0031234; extrinsic to internal side of plasma membrane
GO:0043495; protein anchor
GO:0034613; cellular protein localization
GO:0007163; establishment and/or maintenance of cell polarity
GO: SF 3077846; establishment or maintenance of cell polarity resulting in cell shape" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12789340; date=19700101 ||| term=; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=modification, prenylated; cv=pt_mod; db_xref=PMID:12789340; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mod5" ; product "Tea1 anchoring protein Mod5" ;
chromosome2 GeneDB mRNA 160446 162372 . - . mRNA SPBC1683.09c ; systematic_id "SPBC1683.09c" ; colour "2" ; gene "frp1 ||| SPBC1683.09c" ; Alias "frp1" ; db_xref "SPD:35/35C11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR214W and YKL220C and YOR381W and YNR060W and YGL160W and YLR047C and YOR384W and YLL051C and YOL152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000293; ferric-chelate reductase activity
GO:0005886; plasma membrane
GO:0015677; copper ion import
GO:0033215; iron assimilation by reduction and transport
GO:0005506; iron ion binding
GO:0050660; FAD binding
GO:0016021; integral to membrane
GO:0034755; iron ion transmembrane transport" ; primary_name "frp1" ; product "ferric-chelate reductase Frp1" ; EC_number "1.16.1.7" ;
chromosome2 GeneDB mRNA 1999846 2000453 . + . mRNA SPBP23A10.02 ; systematic_id "SPBP23A10.02" ; colour "7" ; gene "pkr1 ||| SPBP23A10.02" ; Alias "pkr1" ; db_xref "SPD:04/04D09" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0070072; vacuolar proton-transporting V-type ATPase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR123W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "pkr1" ; product "V-ATPase assembly factor Pkr1 (predicted)" ;
chromosome2 GeneDB mRNA 1154612 1155620 . - . mRNA SPBC409.09c ; systematic_id "SPBC409.09c" ; colour "2" ; gene "mis13 ||| SPBC409.09c ||| cnl1" ; Alias "mis13" ; db_xref "SPD:14/14D06" ; synonym "cnl1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; GO "GO:0000939; inner kinetochore of condensed chromosome
GO:0000070; mitotic sister chromatid segregation
GO:0005634; nucleus
GO:0005515; protein binding
GO:0031617; NMS complex
GO:0000818; MIND complex
GO:0000779; condensed chromosome, pericentric region
GO:0019236; response to pheromone
GO:0034501; protein localization to kinetochore" ; primary_name "mis13" ; product "kinetochore protein Mis13" ;
chromosome2 GeneDB mRNA 3231410 3232021 . + . mRNA SPBC19F8.02 ; db_xref "SPD:04/04H08" ; systematic_id "SPBC19F8.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=CS domain; date=20071105 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC19F8.02" ; product "nuclear distribution protein NUDC homolog" ;
chromosome2 GeneDB mRNA 2934743 2935953 . + . mRNA SPBC1703.11 ; db_xref "SPD:11/11A04" ; systematic_id "SPBC1703.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, optic atrophy; date=19700101 ||| term=disease associated, neurological disorders; date=20100304 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC1703.11" ; product "optic atrophy 3 family protein" ;
chromosome2 GeneDB mRNA 4239940 4242695 . - . mRNA SPBC16G5.15c ; systematic_id "SPBC16G5.15c" ; colour "2" ; gene "fkh2 ||| SPBC16G5.15c" ; Alias "fkh2" ; db_xref "SPD:46/46G03" ; GO "GO:0005667; transcription factor complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0033554; cellular response to stress
GO:0007135; meiosis II
GO:0006355; regulation of transcription, DNA- dependent
GO:0045896; regulation of transcription, mitotic
GO:0000117; regulation of transcription involved in G2/M-phase of mitotic cell cycle
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15777722; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; db_xref=PMID:15302827; date=20100727 ||| term=fork head domain; date=19700101 ||| term=orthologous to S. cerevisiae YNL068C and YIL131C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:15302827; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=gene expression, transcriptionally regulates spo12; db_xref=PMID:15302827; date=20100825 ||| term=gene expression, transcriptionally regulates cdc15; db_xref=PMID:15302827; date=20100825" ; primary_name "fkh2" ; product "fork head transcription factor Fkh2" ;
chromosome2 GeneDB mRNA 3309213 3310223 . - . mRNA SPBC17D11.03c ; db_xref "SPD:10/10E07" ; systematic_id "SPBC17D11.03c" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR111C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPBC17D11.03c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 1158533 1160295 . + . mRNA SPBC409.11 ; Alias "meu18" ; db_xref "SPD:34/34G12" ; systematic_id "SPBC409.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; qualifier=predicted; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; colour "8" ; primary_name "meu18" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4344388 4345543 . - . mRNA SPBC16C6.08c ; systematic_id "SPBC16C6.08c" ; colour "7" ; gene "qcr6 ||| SPBC16C6.08c" ; Alias "qcr6" ; db_xref "SPD:11/11G12" ; GO "GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0008121; ubiquinol-cytochrome-c reductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "qcr6" ; product "ubiquinol-cytochrome-c reductase complex subunit 8, hinge protein (predicted)" ;
chromosome2 GeneDB mRNA 2190645 2194546 . - . mRNA SPBC17G9.11c ; systematic_id "SPBC17G9.11c" ; colour "2" ; db_xref "SPD:41/41A07" ; Alias "pyr1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, lactic acidosis; date=20060725 ||| term=orthologous to S. cerevisiae YGL062W and YBR218C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, biotinylated; attribution=pers. comm. J. Stolz; date=20100304" ; GO "GO:0004736; pyruvate carboxylase activity
GO:0006094; gluconeogenesis" ; primary_name "pyr1" ; product "pyruvate carboxylase Pyr1" ; EC_number "6.4.1.1" ;
chromosome2 GeneDB mRNA 247237 248833 . + . mRNA SPBC31E1.05 ; systematic_id "SPBC31E1.05" ; colour "2" ; gene "gle1 ||| SPBC31E1.05" ; Alias "gle1" ; db_xref "SPD:24/24B02" ; GO "GO:0005643; nuclear periphery
GO:0005643; nuclear pore
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0006415; translational termination
GO:0006413; translational initiation
GO:0031369; translation initiation factor binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, NES; cv=sequence_feature; evidence=ISS; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YDL207W; date=19700101 ||| term=disease associated, motor neurone disease; date=20080908 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18758733; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091123" ; primary_name "gle1" ; product "RNA export factor, cytoplasmic nucleoporin Gle1" ;
chromosome2 GeneDB mRNA 1077439 1078950 . - . mRNA SPBC1734.10c ; db_xref "SPD:44/44G10" ; systematic_id "SPBC1734.10c" ; colour "7" ; GO "GO:0006397; mRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR141W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=ncRNA in intron; date=20110201" ; gene "SPBC1734.10c" ; product "mRNA processing protein (predicted)" ;
chromosome2 GeneDB mRNA 4322024 4322622 . - . mRNA SPBC16C6.14 ; Alias "spo2" ; systematic_id "SPBC16C6.14" ; colour "2" ; GO "GO:0005824; outer plaque of spindle pole body
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030437; ascospore formation
GO:0031322; ascospore-type prospore-specific spindle pole body modification
GO:0034613; cellular protein localization" ; controlled_curation "term=species distribution, no apparent orthologs; date=20070115 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18367542; date=20080402 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=gene expression, expressed during meiosis; qualifier=specifically; db_xref=PMID:1836754; date=20101020" ; gene "SPBC16C6.14 ||| spo2" ; primary_name "spo2" ; product "sporulation specific protein Spo2" ;
chromosome2 GeneDB mRNA 626004 627506 . - . mRNA SPBC839.15c ; systematic_id "SPBC839.15c" ; colour "2" ; gene "ef1a-c ||| SPBC839.15c" ; Alias "ef1a-c" ; obsolete_name "ef1-b" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation
GO:0005853; eukaryotic translation elongation factor 1 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR080W and YBR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ef1a-c" ; product "translation elongation factor EF-1 alpha Ef1a-c" ;
chromosome2 GeneDB mRNA 1495924 1497558 . - . mRNA SPBC11B10.07c ; systematic_id "SPBC11B10.07c" ; colour "7" ; gene "SPBC11B10.07c ||| ivn1" ; Alias "ivn1" ; obsolete_name "pi004 ||| SPACTOKYO_453.33c" ; db_xref "SPD:50/50F09" ; GO "GO:0016021; integral to membrane
GO:0005770; late endosome
GO:0005886; plasma membrane
GO:0007166; cell surface receptor linked signal transduction
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR094W and YNL323W and YNR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, InVasioN defective; db_xref=PMID:19542312; date=20090629 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706" ; primary_name "ivn1" ; product "CDC50 domain protein, implicated in signal transduction (predicted)" ;
chromosome2 GeneDB mRNA 1585222 1586602 . + . mRNA SPBC28F2.09 ; systematic_id "SPBC28F2.09" ; colour "7" ; gene "SPBC28F2.09 ||| toa1" ; Alias "toa1" ; db_xref "SPD:19/19B02" ; GO "GO:0016251; general RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0005672; transcription factor TFIIA complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR194C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "toa1" ; product "transcription factor TFIIA complex large subunit Toa1 (predicted)" ;
chromosome2 GeneDB mRNA 3432104 3433533 . - . mRNA SPBC4B4.10c ; systematic_id "SPBC4B4.10c" ; colour "2" ; db_xref "SPD:43/43F09" ; Alias "atg5" ; synonym "mug77" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL149W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005829; cytosol
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032258; CVT pathway
GO:0030437; sporulation (sensu Fungi)" ; primary_name "atg5" ; product "autophagy associated protein Atg5" ;
chromosome2 GeneDB mRNA 2594358 2596381 . + . mRNA SPBC25B2.01 ; systematic_id "SPBC25B2.01" ; colour "7" ; gene "SPBC2G5.08 ||| SPBC25B2.01" ; Alias "SPBC2G5.08" ; db_xref "SPD:26/26D02" ; synonym "SPBC2G5.08" ; GO "GO:0006412; translation
GO:0005737; cytoplasm
GO:0005525; GTP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR084C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC2G5.08" ; product "elongation factor 1 alpha related protein (predicted)" ;
chromosome2 GeneDB mRNA 3036101 3037146 . + . mRNA SPBC15D4.15 ; systematic_id "SPBC15D4.15" ; colour "2" ; gene "pho2 ||| SPBC15D4.15" ; Alias "pho2" ; db_xref "SPD:40/40B11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL236W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=subunit composition, homodimer; cv=subunit_composition; db_xref=PMID:1645660; date=20090418" ; GO "GO:0003869; 4-nitrophenylphosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0004035; alkaline phosphatase activity
GO:0006796; phosphate metabolic process" ; primary_name "pho2" ; product "4-nitrophenylphosphatase" ; EC_number "3.1.3.41" ;
chromosome2 GeneDB mRNA 2089944 2090943 . - . mRNA SPBC18E5.14c ; db_xref "SPD:51/51H05" ; obsolete_name "SPBC18E5.09c" ; systematic_id "SPBC18E5.14c" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, gene structure updated; date=20110115 ||| term=warning, gene structure may be incorrect; attribution=C.Chahwan; date=20110115 ||| term=warning, gene merge; date=20110115" ; gene "SPBC18E5.14c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3100735 3102271 . - . mRNA SPBC1778.03c ; db_xref "SPD:22/22G10" ; systematic_id "SPBC1778.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL067W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006734; NADH metabolism
GO:0000210; NAD+ diphosphatase activity
GO:0005737; cytoplasm" ; gene "SPBC1778.03c" ; product "NADH pyrophosphatase (predicted)" ; EC_number "3.6.1.-" ;
chromosome2 GeneDB mRNA 2212020 2213372 . - . mRNA SPBC14C8.05c ; systematic_id "SPBC14C8.05c" ; colour "2" ; db_xref "SPD:21/21A04" ; Alias "meu17" ; GO "GO:0009986; cell surface
GO:0004339; glucan 1,4-alpha-glucosidase activity
GO:0030437; sporulation (sensu Fungi)
GO:0005980; glycogene catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during sporulation; cv=gene_ex; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL099W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "meu17" ; product "glucan-alpha-1,4-glucosidase" ; EC_number "3.2.1.3" ;
chromosome2 GeneDB mRNA 3161778 3162869 . + . mRNA SPBC609.02 ; systematic_id "SPBC609.02" ; colour "2" ; gene "ptn1 ||| SPBC609.02" ; Alias "ptn1" ; db_xref "SPD:15/15H11" ; GO "GO:0016314; phosphatidylinositol-3,4,5- trisphosphate 3-phosphatase activity
GO:0009992; cellular osmoregulation
GO:0046488; phosphatidylinositol metabolism
GO:0007033; vacuole organization and biogenesis
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL128W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human PTEN and PTENP1 and TPTE2 and TPTE ortholog; date=20100217" ; primary_name "ptn1" ; product "phosphatidylinositol-3,4,5-trisphosphate3-phosphatasePtn1" ;
chromosome2 GeneDB mRNA 1976161 1981255 . - . mRNA SPBC1A4.03c ; systematic_id "SPBC1A4.03c" ; colour "2" ; gene "top2 ||| ptr11 ||| SPBC1A4.03c" ; Alias "top2" ; db_xref "SPD:34/34B05" ; synonym "ptr11" ; GO "GO:0000228; nuclear chromosome
GO:0005524; ATP binding
GO:0003918; DNA topoisomerase (ATP-hydrolyzing) activity
GO:0003918; DNA topoisomerase (ATP-hydrolyzing) activity
GO:0003918; DNA topoisomerase (ATP-hydrolyzing) activity
GO:0006265; DNA topological change
GO:0006265; DNA topological change
GO:0006265; DNA topological change
GO:0006325; establishment and/or maintenance of chromatin architecture
GO:0006406; mRNA export from nucleus
GO:0007076; mitotic chromosome condensation
GO:0000712; resolution of meiotic joint molecules as recombinants
GO:0042790; transcription of nuclear rRNA large RNA polymerase I transcript
GO:0006271; DNA strand elongation during DNA replication" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15957215; date=20061012 ||| term=phenotype, cut; db_xref=PMID:8395535; date=20100705 ||| term=orthologous to S. cerevisiae YNL088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=complementation, functionally complements S. cerevisiae TOP2; db_xref=PMID:3023070; date=20101012" ; primary_name "top2" ; product "DNA topoisomerase II" ; EC_number "5.99.1.3" ;
chromosome2 GeneDB mRNA 2739714 2743391 . + . mRNA SPBC336.03 ; systematic_id "SPBC336.03" ; colour "2" ; gene "efc25 ||| SPBC336.03" ; Alias "efc25" ; db_xref "SPD:47/47F03" ; GO "GO:0005088; Ras guanyl-nucleotide exchange factor activity
GO:0007163; establishment and/or maintenance of cell polarity
GO:0032488; Cdc42 protein signal tansduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, round cells; qualifier=deletion; cv=phenotype; db_xref=PMID:9256078; date=20100630 ||| term=pathway, Ras1-Scd; db_xref=PMID:12052869; cv=pathway; date=19700101 ||| term=orthologous to S. cerevisiae YLR310C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Ras1; db_xref=PMID:12052869; date=20100630 ||| term=name description, Exchange Factor Cdc25-like; date=20100630" ; primary_name "efc25" ; product "Ras1 guanyl-nucleotide exchange factor Efc25" ;
chromosome2 GeneDB mRNA 421123 423181 . + . mRNA SPBC582.03 ; systematic_id "SPBC582.03" ; colour "2" ; gene "cdc13 ||| SPBC582.03" ; Alias "cdc13" ; db_xref "SPD:23/23D02" ; GO "GO:0005634; nucleus
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0034613; cellular protein localization
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0070317; negative regulation of G1 to G0 transition
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=deletion; date=20100730 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YGR108W and YPR119W; date=19700101 ||| term=protein sequence feature, destruction box; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=B-type cyclin; date=20090629" ; primary_name "cdc13" ; product "G2/M B-type cyclin Cdc13" ;
chromosome2 GeneDB mRNA 3127850 3133129 . + . mRNA SPBC4C3.05c ; systematic_id "SPBC4C3.05c" ; colour "2" ; gene "nuc1 ||| rpa1 ||| SPBC4C3.05c" ; Alias "nuc1" ; db_xref "SPD:34/34B06" ; synonym "rpa1" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006406; mRNA export from nucleus
GO:0007000; nucleolus organization and biogenesis
GO:0006360; transcription from RNA polymerase I promoter
GO:0034503; protein localization to rDNA repeats" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR341W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nuc1" ; product "DNA-directed RNA polymerase I complex large subunit Nuc1" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB mRNA 2573866 2574487 . + . mRNA SPBC29A10.17 ; db_xref "PMID:18488015" ; systematic_id "SPBC29A10.17" ; controlled_curation "term=species distribution, no apparent orthologs; date=20080102 ||| term=species distribution, sequence orphan; date=20080102 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; colour "8" ; gene "SPBC29A10.17" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2100167 2101158 . + . mRNA SPBC23G7.16 ; systematic_id "SPBC23G7.16" ; colour "2" ; gene "ctr6 ||| SPBC23G7.16" ; Alias "ctr6" ; db_xref "SPD:09/09H10" ; GO "GO:0000329; vacuolar membrane
GO:0005375; copper ion transporter activity
GO:0035434; copper ion transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression induced by copper limitation; db_xref=PMID:12244050; date=19700101 ||| term=gene expression, transcriptionally regulated by Cuf1; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YHR175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ctr6" ; product "vacuolar copper transporter Ctr6" ;
chromosome2 GeneDB mRNA 3633568 3634610 . - . mRNA SPBP8B7.01c ; systematic_id "SPBP8B7.01c" ; colour "7" ; gene "SPBP8B7.01c" ; Alias "pop7" ; db_xref "SPD:42/42B01" ; obsolete_name "pop6" ; GO "GO:0005655; nucleolar ribonuclease P complex
GO:0000172; ribonuclease MRP complex
GO:0034965; intronic box C/D sno processing
GO:0006379; mRNA cleavage
GO:0006364; rRNA processing
GO:0008033; tRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR167C; date=20080901 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20080202 ||| term=human POP7 ortholog; date=20101028" ; primary_name "pop7" ; product "RNAseP RNAse MRP subunit Pop7 (predicted)" ;
chromosome2 GeneDB mRNA 2661796 2661978 . + . mRNA SPBC3E7.17 ; systematic_id "SPBC3E7.17" ; colour "6" ; controlled_curation "term=warning, longest ORF in feature; cv=warning; date=20091113" ; product "dubious" ;
chromosome2 GeneDB mRNA 340847 341727 . - . mRNA SPBC1271.13 ; systematic_id "SPBC1271.13" ; colour "7" ; gene "SPBC1271.13 ||| mrpl8" ; Alias "mrpl8" ; db_xref "SPD:42/42H12" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0000002; mitochondrial genome maintenance
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL063C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl8" ; product "mitochondrial ribosomal protein subunit L8 (predicted)" ;
chromosome2 GeneDB mRNA 2048191 2050075 . + . mRNA SPBC29A3.06 ; db_xref "SPD:35/35A03" ; systematic_id "SPBC29A3.06" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YJL069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090202 ||| term=warning, frameshifted; residue=518; cv=warning; db_xref=PMID:16823372; date=20090202" ; gene "SPBC29A3.06" ; product "CGI-48 family (predicted)" ;
chromosome2 GeneDB mRNA 3344597 3346413 . + . mRNA SPBC11C11.01 ; systematic_id "SPBC11C11.01" ; colour "7" ; gene "SPBC17D1.08 ||| SPBC11C11.01" ; note "first two predicted exons are tentative - may use internal Met at base position. 18530" ; Alias "SPBC17D1.08" ; db_xref "SPD:45/45E08" ; synonym "SPBC17D1.08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SR140 ortholog; date=20091004 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003723; RNA binding
GO:0005686; U2 snRNP
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "SPBC17D1.08" ; product "U2-associated protein (predicted)" ;
chromosome2 GeneDB mRNA 91724 92863 . - . mRNA SPBPB10D8.04c ; db_xref "SPD:50/50D01" ; systematic_id "SPBPB10D8.04c" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0055085; transmembrane transport
GO:0022857; transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPL092W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBPB10D8.04c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 301797 303720 . - . mRNA SPBC1773.10c ; systematic_id "SPBC1773.10c" ; colour "7" ; gene "SPBC1773.10c ||| nrs1" ; Alias "nrs1" ; db_xref "KEGG:MAP00252; ||| KEGG:MAP00970; ||| SPD:35/35E02" ; synonym "ded81" ; GO "GO:0006421; asparaginyl-tRNA aminoacylation
GO:0004816; asparagine-tRNA ligase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nrs1" ; product "cytoplasmic asparagine-tRNA ligase Nrs1 (predicted)" ; EC_number "6.1.1.22" ;
chromosome2 GeneDB mRNA 2230193 2232009 . + . mRNA SPBC14C8.15 ; db_xref "SPD:45/45A07" ; systematic_id "SPBC14C8.15" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016298; lipase activity
GO:0004771; sterol esterase activity
GO:0006629; lipid metabolism
GO:0006696; ergosterol metabolic process
GO:0044242; cellular lipid catabolic process" ; gene "SPBC14C8.15" ; product "triglyceride lipase-cholesterol esterase (predicted)" ; EC_number "3.1.1.-" ;
chromosome2 GeneDB mRNA 177469 180632 . - . mRNA SPBC1198.04c ; systematic_id "SPBC1198.04c" ; colour "7" ; gene "zas1 ||| SPBC1198.04c" ; Alias "zas1" ; db_xref "SPD:47/47G09" ; GO "GO:0043565; sequence-specific DNA binding
GO:0032569; gene-specific transcription from RNA polymerase II promoter
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YPR022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "zas1" ; product "zinc finger protein, transcription factor Zas1 (predicted)" ;
chromosome2 GeneDB mRNA 1970648 1972903 . + . mRNA SPBC1E8.05 ; db_xref "SPD:13/13D11" ; systematic_id "SPBC1E8.05" ; colour "10" ; GO "GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=; date=20061206 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20061206 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; gene "SPBC1E8.05" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 3532931 3535226 . + . mRNA SPBC1105.14 ; systematic_id "SPBC1105.14" ; colour "2" ; gene "rsv2 ||| SPBC1105.14" ; Alias "rsv2" ; db_xref "SPD:26/26F12" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016563; transcriptional activator activity
GO:0010673; positive regulation of transcription from RNA polymerase II promoter, meiotic
GO:0051039; positive regulation of transcription, meiotic" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YDL020C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17927811; date=20080721 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080721 ||| term=gene expression, transcriptionally activates stress related genes; qualifier=during_sporulation; cv=gene_ex; db_xref=PMID:17927811; date=20080721 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17927811; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rsv2" ; product "transcription factor Rsv2" ;
chromosome2 GeneDB mRNA 2688416 2690594 . - . mRNA SPBC3E7.16c ; systematic_id "SPBC3E7.16c" ; colour "2" ; gene "leu3 ||| SPBC3E7.16c ||| SPBC4F6.03c" ; Alias "leu3" ; db_xref "SPD:36/36B01" ; synonym "SPBC4F6.03c" ; GO "GO:0003852; 2-isopropylmalate synthase activity
GO:0009098; leucine biosynthesis
GO:0009098; leucine biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL104C and YOR108W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "leu3" ; product "2-isopropylmalate synthase Leu3" ; EC_number "2.3.3.13" ;
chromosome2 GeneDB mRNA 2359429 2361092 . + . mRNA SPBC19G7.06 ; systematic_id "SPBC19G7.06" ; colour "2" ; note "possibly functional ortholog of YMR043W PMID:15509866" ; db_xref "SPD:34/34H04" ; Alias "mbx1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR043W and YMR042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15509866; date=20090213 ||| term=warning, gene structure updated; cv=warning; date=20071201 ||| term=name description, Mads BoX protein; date=20090729" ; GO "GO:0005667; transcription factor complex
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding
GO:0071775; regulation of cell cycle cytokinesis
GO:0045896; regulation of transcription, mitotic" ; primary_name "mbx1" ; product "MADS-box transcription factor Mbx1" ;
chromosome2 GeneDB mRNA 1674066 1675348 . + . mRNA SPBC19C2.02 ; systematic_id "SPBC19C2.02" ; colour "2" ; gene "pmt1 ||| SPBC19C2.02" ; Alias "pmt1" ; db_xref "SPD:32/32D02" ; GO "GO:0009008; DNA-methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pmt1" ; product "DNA methyltransferase homolog" ;
chromosome2 GeneDB mRNA 4444104 4446200 . + . mRNA SPBC8E4.01c ; systematic_id "SPBC8E4.01c" ; colour "7" ; gene "SPBP4G3.01 ||| SPBC8E4.01c" ; Alias "SPBP4G3.01" ; db_xref "SPD:45/45F05" ; synonym "SPBP4G3.01" ; GO "GO:0035435; phosphate transmembrane transport
GO:0005887; integral to plasma membrane
GO:0005315; inorganic phosphate transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML123C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824" ; primary_name "SPBP4G3.01" ; product "inorganic phosphate transporter (predicted)" ;
chromosome2 GeneDB mRNA 4104214 4105449 . - . mRNA SPBC56F2.06 ; systematic_id "SPBC56F2.06" ; colour "8" ; gene "SPBC56F2.06 ||| mug147" ; db_xref "SPD:19/19G04" ; Alias "mug147" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; date=20080924 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug147" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1493069 1494553 . - . mRNA SPBC11B10.05c ; systematic_id "SPBC11B10.05c" ; colour "2" ; gene "rsp1 ||| SPBC11B10.05c" ; Alias "rsp1" ; obsolete_name "pi006 ||| SPACTOKYO_453.30c" ; db_xref "SPD:50/50G05" ; GO "GO:0040023; establishment of nucleus localization
GO:0007163; establishment and/or maintenance of cell polarity
GO:0030544; Hsp70 protein binding
; equatorial microtubule organizing center
GO:0005816; spindle pole body
GO:0031021; interphase microtubule organizing center
GO:0031025; equatorial microtubule organizing center disassembly
GO:0031024; interphase microtubule organizing center formation
GO:0032187; contractile ring localization involved in cell cycle cytokinesis
GO:0061077; chaperone-mediated protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC1773.09C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15068790; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, septation defects; cv=phenotype; date=20091223 ||| term=name description, Random Septum Postioning; cv=name_description; date=20091223 ||| term=misc functional group, chaperone; cv=m_f_g; date=20100126" ; primary_name "rsp1" ; product "random septum position protein Rsp1" ;
chromosome2 GeneDB mRNA 68355 68852 . + . mRNA SPBPB21E7.06 ; systematic_id "SPBPB21E7.06" ; pseudo "_no_value" ; synonym "SPAPB21E7.06" ; colour "13" ; gene "SPBPB21E7.06" ; product "pseudogene" ; note "fragmented copy of S. pombe SPBC2A9.02" ;
chromosome2 GeneDB mRNA 1907115 1907722 . - . mRNA SPBP16F5.05c ; db_xref "SPD:31/31D09" ; systematic_id "SPBP16F5.05c" ; colour "7" ; GO "GO:0030688; nucleolar preribosome, small subunit precursor
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL239W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBP16F5.05c" ; product "ribosome biogenesis protein Nop8 (predicted)" ;
chromosome2 GeneDB mRNA 1818277 1819158 . + . mRNA SPBC9B6.03 ; systematic_id "SPBC9B6.03" ; colour "10" ; gene "SPBC9B6.03" ; note "reciprocal best hit of PIB2, but has a much shorter N terminal low complexity region. There is a possibility there is additional N-terminal splicing" ; db_xref "SPD:11/11H10" ; GO "GO:0035091; phosphoinositide binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=orthologous to S. cerevisiae YGL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; product "zf-FYVE type zinc finger protein" ;
chromosome2 GeneDB mRNA 1231079 1232120 . + . mRNA SPBC725.15 ; systematic_id "SPBC725.15" ; colour "2" ; gene "ura5 ||| SPBC725.15" ; Alias "ura5" ; db_xref "SPD:42/42F07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML106W and YMR271C; date=19700101 ||| term=complementation, functionally complements S. pombe ura5 mutant; attribution=pers. comm. C. A. Hoffman; cv=complementation; qualifier=overexpression; date=20080218 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004588; orotate phosphoribosyltransferase activity
GO:0006207; 'de novo' pyrimidine base biosynthesis" ; primary_name "ura5" ; product "orotate phosphoribosyltransferase Ura5" ; EC_number "2.4.2.10" ;
chromosome2 GeneDB mRNA 2810500 2811755 . - . mRNA SPBC32F12.12c ; db_xref "SPD:14/14A11" ; systematic_id "SPBC32F12.12c" ; colour "7" ; GO "GO:0016192; vesicle-mediated transport
GO:0030173; integral to Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR071C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC32F12.12c" ; product "Golgi membrane protein involved in vesicle- medated transport (predicted)" ;
chromosome2 GeneDB mRNA 1180919 1184218 . + . mRNA SPBC1306.02 ; db_xref "SPD:47/47G11" ; systematic_id "SPBC1306.02" ; synonym "SPBC4.08" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL183C; date=19700101 ||| term=WD repeat protein; date=20080125 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=human WDR6 ortholog; date=20100301" ; gene "SPBC1306.02 ||| SPBC4.08" ; product "WD repeat protein, human WDR6 family, implicated in cell cycle" ;
chromosome2 GeneDB mRNA 4056075 4058115 . + . mRNA SPBC215.13 ; db_xref "SPD:45/45C10" ; systematic_id "SPBC215.13" ; colour "8" ; GO "GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; gene "SPBC215.13" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4506517 4507540 . - . mRNA SPBCPT2R1.01c ; systematic_id "SPBCPT2R1.01c" ; colour "12" ; gene "SPBPB2B2.20c ||| SPBCPT2R1.01c" ; Alias "SPBPB2B2.20c" ; synonym "SPBPB2B2.20c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; GO "GO:0009897; external side of plasma membrane" ; primary_name "SPBPB2B2.20c" ; product "S. pombe specific DUF999 protein family 9" ;
chromosome2 GeneDB mRNA 2286945 2288761 . + . mRNA SPBC16H5.07c ; systematic_id "SPBC16H5.07c" ; colour "2" ; gene "ppa2 ||| SPBC16H5.07c" ; Alias "ppa2" ; db_xref "SPD:32/32G03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PP2A; date=19700101 ||| term=orthologous to S. cerevisiae YDL134C and YDL188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:8389308; date=20101124" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0045930; negative regulation of progression through mitotic cell cycle
GO:0045930; negative regulation of progression through mitotic cell cycle
GO:0005737; cytoplasm" ; primary_name "ppa2" ; product "serine/threonine protein phosphatase Ppa2" ; EC_number "3.1.3.16" ;
chromosome2 GeneDB mRNA 1760711 1761975 . + . mRNA SPBC11G11.03 ; systematic_id "SPBC11G11.03" ; colour "7" ; gene "SPBC11G11.03" ; Alias "mrt4" ; db_xref "SPD:16/16C05" ; GO "GO:0006402; mRNA catabolic process
GO:0006364; rRNA processing
GO:0000027; ribosomal large subunit assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrt4" ; product "mRNA turnover and ribosome assembly protein Mrt4 (predicted)" ;
chromosome2 GeneDB mRNA 1717715 1719239 . + . mRNA SPBC2F12.11c ; systematic_id "SPBC2F12.11c" ; colour "2" ; gene "rep2 ||| SPBC2F12.11c" ; Alias "rep2" ; db_xref "SPD:40/40A03" ; GO "GO:0030907; MBF transcription complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0045896; regulation of transcription, mitotic
GO:0051037; regulation of transcription, meiotic
GO:0000083; regulation of transcription involved in G1/S-phase of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=at_low_temperature; db_xref=PMID:7588609; date=20100727 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; date=20100122" ; primary_name "rep2" ; product "transcriptional activator, MBF subunit Rep2" ;
chromosome2 GeneDB mRNA 1525693 1526965 . - . mRNA SPBC83.09c ; db_xref "SPD:44/44B05" ; systematic_id "SPBC83.09c" ; colour "10" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005682; snRNP U5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR156C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC83.09c" ; product "GYF domain protein" ;
chromosome2 GeneDB mRNA 4460559 4461704 . + . mRNA SPBPB2B2.02 ; systematic_id "SPBPB2B2.02" ; colour "10" ; gene "SPBPB2B2.02 ||| mug180" ; db_xref "SPD:50/50D02" ; Alias "mug180" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR263C; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug180" ; product "esterase/lipase (predicted)" ;
chromosome2 GeneDB mRNA 2747191 2748327 . - . mRNA SPBC336.05c ; db_xref "SPD:17/17H10" ; systematic_id "SPBC336.05c" ; colour "7" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0031047; RNA-mediated gene silencing
GO:0008173; RNA methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC336.05c" ; product "S-adenosylmethionine-dependent methyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 1921533 1923066 . + . mRNA SPBC16E9.19 ; db_xref "SPD:51/51F09" ; systematic_id "SPBC16E9.19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC16E9.19" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1524007 1525661 . + . mRNA SPBC83.08 ; systematic_id "SPBC83.08" ; colour "2" ; gene "SPBC83.08 ||| rvb2" ; Alias "rvb2" ; db_xref "SPD:24/24C09" ; GO "GO:0000812; Swr1 complex
GO:0016887; ATPase activity
GO:0006338; chromatin remodeling
GO:0031011; Ino80 complex
GO:0070209; ASTRA complex
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YPL235W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230" ; primary_name "rvb2" ; product "AAA family ATPase Rvb2" ;
chromosome2 GeneDB mRNA 887602 888649 . - . mRNA SPBC713.11c ; systematic_id "SPBC713.11c" ; colour "2" ; gene "pmp3 ||| SPBC713.11c" ; Alias "pmp3" ; db_xref "SPD:41/41A01" ; GO "GO:0006812; cation transport
GO:0005886; plasma membrane
GO:0042391; regulation of membrane potential
GO:0030003; cation homeostasis
GO:0071473; cellular response to cation stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060412 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16603158; date=20060412 ||| term=orthologous to S. cerevisiae YDR276C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "pmp3" ; product "plasma membrane proteolipid Pmp3" ;
chromosome2 GeneDB mRNA 1812748 1816749 . - . mRNA SPBC9B6.02c ; systematic_id "SPBC9B6.02c" ; colour "4" ; gene "Tf2-9 ||| SPBC9B6.02c" ; Alias "Tf2-9" ; db_xref "SPD:34/34B01" ; synonym "SPBC9B6.02" ; controlled_curation "term=tf2-type transposon; date=19700101" ; primary_name "Tf2-9" ; product "retrotransposable element" ;
chromosome2 GeneDB mRNA 2557224 2563164 . - . mRNA SPBC29A10.10c ; db_xref "SPD:51/51F01" ; systematic_id "SPBC29A10.10c" ; colour "7" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing
GO:0016180; snRNA processing
GO:0043144; snoRNA processing
GO:0008033; tRNA processing
GO:0005634; nucleus
GO:0035649; Nrd1 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR430W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC29A10.10c" ; product "tRNA-splicing endonuclease positive effector (predicted)" ;
chromosome2 GeneDB mRNA 928887 931025 . + . mRNA SPBC646.04 ; systematic_id "SPBC646.04" ; colour "2" ; gene "pla1 ||| SPBC646.04" ; Alias "pla1" ; db_xref "SPD:45/45H12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004652; polynucleotide adenylyltransferase activity
GO:0006378; mRNA polyadenylation
GO:0005847; mRNA cleavage and polyadenylation specificity factor complex
GO:0006406; mRNA export from nucleus" ; primary_name "pla1" ; product "poly(A) polymerase Pla1" ; EC_number "2.7.7.19" ;
chromosome2 GeneDB mRNA 1058347 1059126 . + . mRNA SPBC337.16 ; systematic_id "SPBC337.16" ; colour "2" ; gene "cho1 ||| SPBC337.16" ; Alias "cho1" ; db_xref "KEGG:MAP00260; ||| SPD:40/40A09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR073C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006656; phosphatidylcholine biosynthesis
GO:0000773; phosphatidyl-N-methylethanolamine N- methyltransferase activity
GO:0005789; endoplasmic reticulum membrane" ; primary_name "cho1" ; product "phosphatidyl-N-methylethanolamine N- methyltransferase (predicted)" ; EC_number "2.1.1.71" ;
chromosome2 GeneDB mRNA 1124433 1126087 . - . mRNA SPBC1709.13c ; systematic_id "SPBC1709.13c" ; colour "2" ; gene "set10 ||| SPBC1709.13c" ; Alias "set10" ; db_xref "SPD:34/34E07" ; GO "GO:0016279; protein-lysine N-methyltransferase activity
GO:0006479; protein amino acid methylation
GO:0042254; ribosome biogenesis
GO:0018027; peptidyl-lysine dimethylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL208W and YHL039W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Rpl2301; db_xref=PMID:18292091; date=20100630 ||| term=target is Rpl2302; db_xref=PMID:18292091; date=20100630" ; primary_name "set10" ; product "ribosomal lysine methyltransferase Set10" ;
chromosome2 GeneDB mRNA 3685871 3686791 . + . mRNA SPBP8B7.25 ; systematic_id "SPBP8B7.25" ; colour "7" ; gene "cyp4 ||| SPBP8B7.25" ; Alias "cyp4" ; db_xref "SPD:08/08C02" ; GO "GO:0005788; endoplasmic reticulum lumen" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR304C and YHR057C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cyp4" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp4 (predicted)" ;
chromosome2 GeneDB mRNA 3272930 3274420 . + . mRNA SPBC25H2.06c ; systematic_id "SPBC25H2.06c" ; colour "7" ; gene "SPBC25H2.06c ||| hfr1" ; Alias "hrf1" ; db_xref "SPD:11/11H11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL263C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030134; ER to Golgi transport vesicle
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030173; integral to Golgi membrane
GO:0005789; endoplasmic reticulum membrane
GO:0070317; negative regulation of G1 to G0 transition" ; primary_name "hrf1" ; product "COPII-coated vesicle component Hrf1 (predicted)" ; reserved_name "hrf1" ;
chromosome2 GeneDB mRNA 2214396 2215724 . + . mRNA SPBC14C8.06 ; systematic_id "SPBC14C8.06" ; colour "2" ; gene "arc1 ||| sop2 ||| SPBC14C8.06" ; Alias "arc1" ; db_xref "SPD:32/32F03" ; synonym "sop2" ; GO "GO:0005515; protein binding
GO:0033205; cell cycle cytokinesis
GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0000147; actin cortical patch assembly
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YBR234C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arc1" ; product "ARP2/3 actin-organizing complex subunit Sop2" ;
chromosome2 GeneDB mRNA 308160 309944 . + . mRNA SPBC1773.12 ; db_xref "SPD:45/45H01" ; systematic_id "SPBC1773.12" ; colour "7" ; GO "GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000228; nuclear chromosome
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPBC1773.16C and SPAC11D3.07c and SPAPB24D3.01; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1773.12" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB mRNA 3571306 3573067 . - . mRNA SPBC887.15c ; systematic_id "SPBC887.15c" ; colour "2" ; gene "SPBC887.15c" ; Alias "sur2" ; db_xref "SPD:11/11H12" ; GO "GO:0000170; sphingosine hydroxylase activity
GO:0005789; endoplasmic reticulum membrane
GO:0005506; iron ion binding
GO:0006675; mannose inositol phosphoceramide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR297W; date=19700101" ; primary_name "sur2" ; product "sphingosine hydroxylase Sur2" ;
chromosome2 GeneDB mRNA 1669719 1670144 . - . mRNA SPBC21B10.02 ; db_xref "SPD:05/05B10" ; systematic_id "SPBC21B10.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC21B10.02" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4048926 4050137 . + . mRNA SPBC215.10 ; db_xref "SPD:12/12E11" ; systematic_id "SPBC215.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=haloacid dehalogenase-like hydrolase; date=20080529 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBC215.10" ; product "haloacid dehalogenase-like hydrolase" ;
chromosome2 GeneDB mRNA 4432278 4433428 . - . mRNA SPBC8E4.04 ; db_xref "SPD:14/14A09" ; systematic_id "SPBC8E4.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR120W and YDR368W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0019568; arabinose catabolism
GO:0004033; aldo-keto reductase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0042843; D-xylose catabolism" ; gene "SPBC8E4.04" ; product "aldo/keto reductase involved in pentose catabolism (predicted)" ; EC_number "1.1.1.-" ;
chromosome2 GeneDB mRNA 4077200 4078738 . + . mRNA SPBC1347.09 ; db_xref "SPD:11/11C09" ; systematic_id "SPBC1347.09" ; colour "7" ; GO "GO:0004395; hexaprenyldihydroxybenzoate methyltransferase activity
GO:0006744; ubiquinone biosynthesis
GO:0019898; extrinsic to membrane
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL096C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1347.09" ; product "hexaprenyldihydroxybenzoate methyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 3072290 3072793 . + . mRNA SPBC30D10.12c ; systematic_id "SPBC30D10.12c" ; colour "7" ; gene "SPBC30D10.12c ||| rsm27" ; Alias "rsm27" ; db_xref "SPD:03/03A10" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR215W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rsm27" ; product "mitochondrial ribosomal protein subunit S27 (predicted)" ;
chromosome2 GeneDB mRNA 1574338 1575648 . + . mRNA SPBC28F2.02 ; systematic_id "SPBC28F2.02" ; colour "2" ; gene "mep33 ||| SPBC28F2.02" ; Alias "mep33" ; db_xref "SPD:11/11H06" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0005737; cytoplasm
GO:0006406; mRNA export from nucleus
GO:0007094; mitotic spindle checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-C3H1 type; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YOR091W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mep33" ; product "mRNA export protein Mep33" ;
chromosome2 GeneDB mRNA 3340364 3344541 . - . mRNA SPBC17D1.07c ; db_xref "SPD:48/48A02" ; systematic_id "SPBC17D1.07c" ; colour "7" ; GO "GO:0005509; calcium ion binding
GO:0030695; GTPase regulator activity
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=calponin homology (CH) domain; date=19700101 ||| term=IQ domain; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC17D1.07c" ; product "GTPase regulator (predicted)" ;
chromosome2 GeneDB mRNA 2758645 2759237 . - . mRNA SPBC336.10c ; systematic_id "SPBC336.10c" ; colour "7" ; gene "tif512 ||| SPBC336.10c" ; note "previously thought to function in initiation (predicted)" ; Alias "tif512" ; db_xref "SPD:31/31D10" ; GO "GO:0003746; translation elongation factor activity
GO:0045901; positive regulation of translational elongation
GO:0022626; cytosolic ribosome
GO:0043022; ribosome binding
GO:0045905; positive regulation of translational termination
GO:0003723; RNA binding
GO:0006452; translational frameshifting" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR047C and YEL034W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, hypusination; evidence=ISS; with=SGD:S000000760; cv=pt_mod; date=20090518" ; primary_name "tif512" ; product "translation elongation factor eIF5A (predicted)" ;
chromosome2 GeneDB mRNA 2420382 2422258 . - . mRNA SPBC21D10.12 ; systematic_id "SPBC21D10.12" ; colour "2" ; gene "hob1 ||| SPBC21D10.12" ; Alias "hob1" ; db_xref "SPD:23/23F06" ; GO "GO:0051285; cell cortex of cell tip
GO:0031097; medial ring
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0006348; chromatin silencing at telomere
GO:0007163; establishment and/or maintenance of cell polarity
GO:0007346; regulation of mitotic cell cycle
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0033554; cellular response to stress
GO:0000723; telomere maintenance
GO:0000723; telomere maintenance
GO:0051020; GTPase-binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BAR domain; cv=protein_family; date=20060913 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12569356; date=20060913 ||| term=complementation, functionally complemented by human BIN1; db_xref=PMID:12569356; cv=complementation; date=19700101 ||| term=orthologous to S. cerevisiae YDR388W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "hob1" ; product "BAR adaptor protein Hob1" ;
chromosome2 GeneDB mRNA 2906091 2907124 . - . mRNA SPBP4H10.16c ; db_xref "SPD:12/12A10" ; systematic_id "SPBP4H10.16c" ; colour "7" ; GO "GO:0019211; phosphatase activator activity
GO:0033554; cellular response to stress
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR043W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBP4H10.16c" ; product "phosphatase activator (predicted)" ;
chromosome2 GeneDB mRNA 153461 155550 . + . mRNA SPBC1683.07 ; systematic_id "SPBC1683.07" ; colour "2" ; gene "mal1 ||| SPBC1683.07" ; Alias "mal1" ; db_xref "SPD:35/35H07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL172C and YJL221C and YOL157C and YJL216C and YGR287C and YBR299W and YGR292W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0009986; cell surface
GO:0032450; maltase activity
GO:0044247; cellular polysaccharide catabolism
GO:0000025; maltose catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "mal1" ; product "maltase alpha-glucosidase Mal1" ; EC_number "3.2.1.20" ;
chromosome2 GeneDB mRNA 3643818 3645504 . - . mRNA SPBP8B7.07c ; systematic_id "SPBP8B7.07c" ; colour "7" ; gene "set6 ||| SPBP8B7.07c" ; Alias "set6" ; db_xref "SPD:45/45D08" ; GO "GO:0018024; histone-lysine N-methyltransferase activity
GO:0016571; histone methylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-MYND type; date=19700101 ||| term=SET domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SMYD1 and SMYD2 and SMYD3 ortholog; date=20100908" ; primary_name "set6" ; product "histone lysine methyltransferase Set6 (predicted)" ;
chromosome2 GeneDB mRNA 1053703 1054914 . - . mRNA SPBC337.13c ; systematic_id "SPBC337.13c" ; colour "7" ; gene "gtr1 ||| SPBC337.13c" ; Alias "gtr1" ; db_xref "SPD:12/12H10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML121W; date=19700101 ||| term=human RRAGA ortholog; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gtr1" ; product "Gtr1/RagA G protein Gtr1 (predicted)" ;
chromosome2 GeneDB mRNA 142407 145156 . + . mRNA SPBC1683.04 ; db_xref "SPD:29/29A09" ; systematic_id "SPBC1683.04" ; colour "7" ; GO "GO:0044275; cellular carbohydrate catabolism
GO:0044248; cellular catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; gene "SPBC1683.04" ; product "glycosyl hydrolase family 3 (predicted)" ;
chromosome2 GeneDB mRNA 4203368 4205852 . + . mRNA SPBC342.02 ; systematic_id "SPBC342.02" ; colour "7" ; gene "SPBC342.02 ||| qrs1" ; Alias "qrs1" ; db_xref "SPD:28/28G04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0005737; cytoplasm
GO:0004819; glutamine-tRNA ligase activity
GO:0006425; glutaminyl-tRNA aminoacylation" ; primary_name "qrs1" ; product "cytoplasmic glutaminyl-tRNA ligase Qrs1 (predicted)" ; EC_number "6.1.1.18" ;
chromosome2 GeneDB mRNA 3403558 3405538 . + . mRNA SPBC13A2.03 ; db_xref "SPD:50/50G11" ; systematic_id "SPBC13A2.03" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004605; phosphatidate cytidylyltransferase activity
GO:0006655; phosphatidylglycerol biosynthesis
GO:0006658; phosphatidylserine metabolism
GO:0005783; endoplasmic reticulum
GO:0016021; integral to membrane" ; gene "SPBC13A2.03" ; product "phosphatidate cytidylyltransferase (predicted)" ; EC_number "2.7.7.41" ;
chromosome2 GeneDB mRNA 3883221 3883650 . + . mRNA SPBC211.05 ; systematic_id "SPBC211.05" ; colour "7" ; gene "SPBC211.05" ; db_xref "SPD:02/02G01" ; Alias "sab10" ; GO "GO:0000398; nuclear mRNA splicing via spliceosome
GO:0005681; spliceosomal complex" ; controlled_curation "term=orthologous to S. cerevisiae YNL138W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sab10" ; product "splicing factor 3B (predicted)" ; reserved_name "sab10" ;
chromosome2 GeneDB mRNA 3963243 3963615 . - . mRNA SPBC26H8.16 ; db_xref "PMID:18488015" ; systematic_id "SPBC26H8.16" ; controlled_curation "term=orthologous to S. cerevisiae YBR269C; date=20080103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=human Corf57 ortholog; date=20100727" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPBC26H8.16" ; product "mitochondrial protein, DUF1674 family" ;
chromosome2 GeneDB mRNA 3003386 3003837 . - . mRNA SPBC2D10.19c ; systematic_id "SPBC2D10.19c" ; colour "7" ; gene "SPBC2D10.19c" ; note "confirmed by est" ; db_xref "SPD:03/03H12" ; GO "GO:0042273; ribosomal large subunit biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL122W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090825 ||| term=species distribution, conserved in Fungi only; date=20090825" ; product "pre-60S shuttlingfactor (predicted)" ;
chromosome2 GeneDB mRNA 3692473 3694832 . + . mRNA SPBP8B7.29 ; db_xref "SPD:37/37F07" ; systematic_id "SPBP8B7.29" ; colour "7" ; GO "GO:0046820; 4-amino-4-deoxychorismate synthase activity
GO:0005737; cytoplasm
GO:0008153; para-aminobenzoic acid biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR033W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBP8B7.29" ; product "para-aminobenzoate synthase (predicted)" ;
chromosome2 GeneDB mRNA 2262202 2264130 . + . mRNA SPBC21H7.05 ; systematic_id "SPBC21H7.05" ; colour "2" ; gene "sfc6 ||| SPBC21H7.05" ; db_xref "SPD:33/33E09" ; Alias "sfc6" ; GO "GO:0000127; transcription factor TFIIIC complex
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003709; RNA polymerase III transcription factor activity
GO:0071443; tDNA binding
GO:0043035; chromatin insulator sequence binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; evidence=TAS; db_xref=PMID:10906331; date=20070216 ||| term=WD repeat protein; date=20070216 ||| term=orthologous to S. cerevisiae YDR362C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sfc6" ; product "transcription factor TFIIIC complex subunit Sfc6" ;
chromosome2 GeneDB mRNA 1783259 1784006 . + . mRNA SPBC18H10.07 ; db_xref "SPD:09/09B05" ; systematic_id "SPBC18H10.07" ; colour "7" ; GO "GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human WBP4 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC18H10.07" ; product "WW domain-binding protein 4 (predicted)" ;
chromosome2 GeneDB mRNA 3070485 3071908 . + . mRNA SPBC30D10.13c ; systematic_id "SPBC30D10.13c" ; colour "2" ; gene "pdb1 ||| SPBC30D10.13c" ; Alias "pdb1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00290; ||| KEGG:MAP00620; ||| KEGG:MAP00650; ||| SPD:39/39E10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR221C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006086; acetyl-CoA biosynthesis from pyruvate
GO:0004739; pyruvate dehydrogenase (acetyl- transferring) activity
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)" ; primary_name "pdb1" ; product "pyruvate dehydrogenase e1 component beta subunit Pdb1" ; EC_number "1.2.4.1" ;
chromosome2 GeneDB mRNA 543359 544725 . + . mRNA SPBC354.01 ; systematic_id "SPBC354.01" ; colour "7" ; gene "gtp1 ||| SPBC649.06 ||| SPBC354.01" ; Alias "gtp1" ; db_xref "SPD:22/22G02" ; synonym "SPBC649.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YGR173W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gtp1" ; product "GTP binding protein Gtp1 (predicted)" ;
chromosome2 GeneDB mRNA 1061896 1063440 . - . mRNA SPBC1734.02c ; systematic_id "SPBC1734.02c" ; colour "2" ; gene "cdc27 ||| SPBC1734.02c ||| SPBC337.18c" ; Alias "cdc27" ; db_xref "SPD:40/40E06" ; synonym "SPBC337.18c" ; GO "GO:0043625; delta DNA polymerase complex
GO:0006271; DNA strand elongation
GO:0000731; DNA synthesis during DNA repair
GO:0003887; DNA-directed DNA polymerase activity
GO:0008408; 3'-5' exonuclease activity
GO:0005515; protein binding
GO:0000723; telomere maintenance
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043137; DNA replication, removal of RNA primer
GO:0005515; protein binding
GO:0005515; protein binding
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization, recruits PCNA to the Pol delta holoenzyme; db_xref=PMID:12124382; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YJR043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:6943408; date=20100705" ; primary_name "cdc27" ; product "DNA polymerase delta subunit Cdc27" ;
chromosome2 GeneDB mRNA 4299042 4300961 . - . mRNA SPBC16A3.01 ; systematic_id "SPBC16A3.01" ; colour "2" ; gene "spn3 ||| SPBC16A3.01 ||| SPBC543.01c" ; Alias "spn3" ; db_xref "SPD:33/33B05" ; synonym "SPBC543.01c" ; GO "GO:0005525; GTP binding
GO:0031105; septin complex
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0005940; septin ring" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15385632; date=19700101 ||| term=phenotype, cell morphology, elongated and multiseptate; db_xref=PMID:15385632; date=20100726 ||| term=orthologous to S. cerevisiae YJR076C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "spn3" ; product "septin Spn3" ;
chromosome2 GeneDB mRNA 4352580 4354075 . - . mRNA SPBC16C6.12c ; db_xref "SPD:21/21G08" ; systematic_id "SPBC16C6.12c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR063C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC16C6.12c" ; product "Las1-like protein" ;
chromosome2 GeneDB mRNA 4140281 4144350 . + . mRNA SPBC1861.05 ; db_xref "SPD:28/28A10" ; systematic_id "SPBC1861.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=species distribution, conserved in Eukaryotes; date=20070115 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101" ; colour "10" ; gene "SPBC1861.05" ; product "carbohydrate kinase (predicted)" ;
chromosome2 GeneDB mRNA 3930787 3933318 . - . mRNA SPBC1604.01 ; systematic_id "SPBC1604.01" ; colour "7" ; gene "SPBC1604.01 ||| SPBC1677.01c ||| mug158" ; Alias "mug158" ; db_xref "SPD:28/28C11" ; synonym "SPBC1677.01c" ; GO "GO:0005783; endoplasmic reticulum
GO:0005509; calcium ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, lysosomal storage disease multiple sulfatase deficiency (MSD); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mug158" ; product "sulfatase modifying factor 1 related (predicted)" ;
chromosome2 GeneDB mRNA 1925686 1926201 . - . mRNA SPBC16E9.06c ; systematic_id "SPBC16E9.06c" ; colour "2" ; gene "uvi31 ||| SPBC16E9.06c" ; Alias "uvi31" ; db_xref "SPD:31/31C06" ; GO "GO:0034644; cellular response to UV
GO:0034644; cellular response to UV" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expression induced by UV; db_xref=PMID:9258332; cv=gene_ex; date=20050415 ||| term=phenotype, sporulation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:12521307; date=20050415 ||| term=orthologous to S. cerevisiae YAL044W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "uvi31" ; product "BolA domain UV induced protein Uvi31" ;
chromosome2 GeneDB mRNA 2075364 2077124 . + . mRNA SPBC18E5.01 ; systematic_id "SPBC18E5.01" ; colour "10" ; gene "SPBC29A3.19 ||| SPBC18E5.01" ; Alias "SPBC29A3.19" ; db_xref "SPD:15/15E08" ; synonym "SPBC29A3.19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; primary_name "SPBC29A3.19" ; product "cycloisomerase 2 family" ;
chromosome2 GeneDB mRNA 3888696 3892036 . + . mRNA SPBC1604.21c ; systematic_id "SPBC1604.21c" ; colour "2" ; gene "ptr3 ||| uba1 ||| SPBC211.09 ||| SPBC1604.21c" ; Alias "ptr3" ; db_xref "SPD:48/48A09" ; synonym "uba1 ||| SPBC211.09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006406; mRNA export from nucleus
GO:0032446; protein modification by small protein conjugation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL210W; date=19700101 ||| term=human UBA1 ortholog; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ptr3" ; product "ubiquitin activating enzyme E1" ;
chromosome2 GeneDB mRNA 723535 724912 . + . mRNA SPBC119.06 ; systematic_id "SPBC119.06" ; colour "7" ; gene "sco1 ||| SPBC119.06" ; Alias "sco1" ; db_xref "SPD:10/10A06" ; GO "GO:0005743; mitochondrial inner membrane
GO:0016531; copper chaperone activity
GO:0005507; copper ion binding
GO:0006825; copper ion transport
GO:0008535; cytochrome c oxidase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR037C and YBR024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111" ; primary_name "sco1" ; product "copper chaperone Sco1 (predicted)" ;
chromosome2 GeneDB mRNA 1241525 1243178 . - . mRNA SPBC651.03c ; systematic_id "SPBC651.03c" ; colour "2" ; gene "gyp10 ||| SPBC651.03c" ; note "GAP for Ypt" ; Alias "gyp10" ; db_xref "SPD:17/17F07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16291723; date=19700101 ||| term=orthologous to S. cerevisiae YFL027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005783; endoplasmic reticulum
GO:0000920; cell separation during cytokinesis
GO:0035023; regulation of Rho protein signal transduction
GO:0016192; vesicle-mediated transport
GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; primary_name "gyp10" ; product "GTPase activating protein Gyp10" ;
chromosome2 GeneDB mRNA 1386290 1387612 . + . mRNA SPBC8D2.15 ; systematic_id "SPBC8D2.15" ; colour "7" ; gene "SPBC8D2.15" ; Alias "lip5" ; db_xref "SPD:32/32E10" ; GO "GO:0016992; lipoate synthase activity
GO:0016992; lipoic acid synthase activity
GO:0005739; mitochondrion
GO:0009107; lipoate biosynthesis
GO:0009249; protein lipoylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR196C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lip5" ; product "mitochondrial lipoic acid synthetase Lip5 (predicted)" ;
chromosome2 GeneDB mRNA 2101269 2103798 . - . mRNA SPBC23G7.04c ; systematic_id "SPBC23G7.04c" ; colour "2" ; gene "nif1 ||| SPBC23G7.04c" ; note "ortholog data pers. comm. Maria Novatchkova" ; Alias "nif1" ; db_xref "SPD:33/33F08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SEL1 repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR007C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:9135149; date=20101124" ; GO "GO:0010972; negative regulation of G2/M transition mitotic cell cycle" ; primary_name "nif1" ; product "SEL1 repeat protein Nif1" ;
chromosome2 GeneDB mRNA 1176793 1177840 . + . mRNA SPBC409.21 ; systematic_id "SPBC409.21" ; colour "7" ; gene "sec66 ||| SPBC409.21" ; Alias "sec66" ; db_xref "SPD:06/06C06" ; GO "GO:0006620; posttranslational protein targeting to membrane
GO:0005789; endoplasmic reticulum membrane
GO:0031207; Sec62/Sec63 complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR171W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "sec66" ; product "ER protein translocation subcomplex subunit Sec66 (predicted)" ;
chromosome2 GeneDB mRNA 2085537 2087521 . + . mRNA SPBC18E5.07 ; db_xref "SPD:26/26B10" ; systematic_id "SPBC18E5.07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR003W; date=20091106 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106" ; colour "10" ; gene "SPBC18E5.07" ; product "DUF3210 family protein" ;
chromosome2 GeneDB mRNA 2424502 2425499 . - . mRNA SPBC21D10.10 ; systematic_id "SPBC21D10.10" ; colour "2" ; gene "SPBC21D10.10 ||| bdc1" ; Alias "bdc1" ; db_xref "SPD:12/12D04" ; GO "GO:0006338; chromatin remodeling
GO:0035267; NuA4 histone acetyltransferase complex
GO:0016573; histone acetylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bdc1" ; product "bromodomain containing protein 1, Bdc1" ;
chromosome2 GeneDB mRNA 1819886 1821433 . - . mRNA SPBC9B6.04c ; systematic_id "SPBC9B6.04c" ; colour "2" ; gene "tuf1 ||| SPBC9B6.04c" ; Alias "tuf1" ; db_xref "SPD:21/21C03" ; GO "GO:0005759; mitochondrial matrix
GO:0003746; translation elongation factor activity
GO:0006414; translational elongation
GO:0005525; GTP binding
GO:0000049; tRNA binding
GO:0003924; GTPase activity
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15695360; date=19700101 ||| term=orthologous to S. cerevisiae YOR187W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tuf1" ; product "mitochondrial translation elongation factor EF- Tu Tuf1" ;
chromosome2 GeneDB mRNA 2159843 2161291 . + . mRNA SPBC1711.13 ; systematic_id "SPBC1711.13" ; colour "2" ; gene "his2 ||| SPBC1711.13" ; note "similarity to YCL030C is at the C-term, S. pombe his7 is similar to YCl030C at the N-term" ; Alias "his2" ; db_xref "SPD:32/32H01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL030C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000105; histidine biosynthesis
GO:0004399; histidinol dehydrogenase activity
GO:0004399; histidinol dehydrogenase activity" ; primary_name "his2" ; product "histidinol dehydrogenase His2 (predicted)" ; EC_number "1.1.1.23" ;
chromosome2 GeneDB mRNA 2648745 2650936 . - . mRNA SPBC6B1.09c ; systematic_id "SPBC6B1.09c" ; colour "2" ; gene "nbs1 ||| SPBC6B1.09c" ; Alias "nbs1" ; db_xref "SPD:45/45A11" ; synonym "slr10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12944481; date=20100705 ||| term=phenotype, nuclear morphology defects; db_xref=PMID:12944481; date=20100705 ||| term=phenotype, sensitive to MMS; db_xref=PMID:12944481; date=20100705 ||| term=BRCT domain; db_xref=PMID:12944482; date=20060809 ||| term=orthologous to S. cerevisiae YDR369C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20090629 ||| term=disease associated, cancer; date=20090629 ||| term=disease associated, Nijmegen breakage syndrome; date=20060809 ||| term=warning, gene structure updated; cv=warning; date=20020204 ||| term=warning, gene structure updated; cv=warning; date=20030703 ||| term=human NBN ortholog; date=20100203" ; GO "GO:0030870; Mre11 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000077; DNA damage checkpoint
GO:0000724; double-strand break repair via homologous recombination
GO:0031573; intra-S DNA damage checkpoint
GO:0042138; meiotic DNA double-strand break formation
GO:0033127; regulation of histone phosphorylation
GO:0000723; telomere maintenance" ; primary_name "nbs1" ; product "Mre11 complex subunit Nbs1" ;
chromosome2 GeneDB mRNA 2096430 2098028 . - . mRNA SPBC18E5.12c ; systematic_id "SPBC18E5.12c" ; colour "7" ; gene "SPBC18E5.12c ||| SPBC23G7.02c ||| mas2" ; Alias "mas2" ; db_xref "SPD:23/23H12" ; synonym "SPBC23G7.02c" ; GO "GO:0017087; mitochondrial processing peptidase complex
GO:0004222; metalloendopeptidase activity
GO:0006627; mitochondrial protein processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "mas2" ; product "mitochondrial processing peptidase(MPP) complex alpha subunit Mas2 (predicted)" ; EC_number "3.4.24.64" ;
chromosome2 GeneDB mRNA 1946887 1947818 . + . mRNA SPBC16E9.15 ; db_xref "SPD:03/03A05" ; systematic_id "SPBC16E9.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPBC16E9.15" ; product "heat shock factor binding protein (predicted)" ;
chromosome2 GeneDB mRNA 3505802 3507472 . - . mRNA SPBC1105.02c ; systematic_id "SPBC1105.02c" ; colour "2" ; gene "lys4 ||| SPBC1105.02c" ; Alias "lys4" ; db_xref "SPD:20/20A12" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL131W and YDL182W; date=19700101 ||| term=gene expression, transcriptionally regulated by Phx1; db_xref=PMID:16299000; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004410; homocitrate synthase activity
GO:0019878; lysine biosynthesis via aminoadipic acid
GO:0005634; nucleus
GO:0005739; mitochondrion" ; primary_name "lys4" ; product "homocitrate synthase (predicted)" ; EC_number "2.3.3.14" ;
chromosome2 GeneDB mRNA 2343550 2345691 . + . mRNA SPBC24C6.11 ; systematic_id "SPBC24C6.11" ; colour "2" ; gene "cwf14 ||| SPBC24C6.11" ; Alias "cwf14" ; db_xref "SPD:05/05G03" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YCR063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf14" ; product "G10 protein" ;
chromosome2 GeneDB mRNA 1789361 1790736 . - . mRNA SPBC18H10.11c ; db_xref "SPD:22/22E10" ; systematic_id "SPBC18H10.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PPR domains; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC18H10.11c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 470371 471704 . + . mRNA SPBC428.14 ; db_xref "SPD:16/16A11" ; systematic_id "SPBC428.14" ; colour "7" ; GO "GO:0008654; phospholipid biosynthesis
GO:0008415; acyltransferase activity
GO:0016411; acylglycerol O-acyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YBR042C and YDR018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC428.14" ; product "1-acylglycerol-3-phosphate acyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 628001 631466 . + . mRNA SPBC839.16 ; db_xref "SPD:30/30B02" ; systematic_id "SPBC839.16" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR084W and YGR204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=catalytic activity, trifunctional enzyme; db_xref=PMID:8226914; cv=cat_act; date=20081211 ||| term=ssDNA binding within synthetase domain; db_xref=PMID:8826914; date=20081212" ; GO "GO:0004329; formate-tetrahydrofolate ligase activity
GO:0004477; methenyltetrahydrofolate cyclohydrolase activity
GO:0004488; methylenetetrahydrofolate dehydrogenase (NADP+) activity
GO:0003697; single-stranded DNA binding
GO:0009257; 10-formyltetrahydrofolate biosynthesis
GO:0006730; one-carbon compound metabolic process
GO:0009113; purine base biosynthesis
GO:0046656; folic acid biosynthetic process" ; gene "SPBC839.16" ; product "C1-5,6,7,8-tetrahydrofolate (THF) synthase" ; EC_number "6.3.4.3 ||| 3.5.4.9 ||| 1.5.1.5" ;
chromosome2 GeneDB mRNA 1410872 1412747 . - . mRNA SPBC17A3.05c ; obsolete_name "pi041" ; db_xref "SPD:32/32H03" ; systematic_id "SPBC17A3.05c" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, similar to S. cerevisiae HLJ1, but has different domain arrangement; cv=warning; date=20100127" ; gene "SPBC17A3.05c" ; product "DNAJ/DUF1977 DNAJB12 homolog (predicted)" ;
chromosome2 GeneDB mRNA 3032492 3033222 . - . mRNA SPBC15D4.13c ; db_xref "SPD:08/08G04" ; systematic_id "SPBC15D4.13c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human ASCC1 ortholog; date=20080925 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080925 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006350; transcription" ; colour "7" ; gene "SPBC15D4.13c" ; product "human ASCC1 ortholog (predicted)" ;
chromosome2 GeneDB mRNA 4024341 4027205 . + . mRNA SPBC215.01 ; systematic_id "SPBC215.01" ; colour "7" ; gene "SPBC3B9.20 ||| SPBC215.01" ; Alias "SPBC3B9.20" ; db_xref "SPD:29/29B02" ; synonym "SPBC3B9.20" ; GO "GO:0005509; calcium ion binding
GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YGR100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "SPBC3B9.20" ; product "GTPase activating protein (predicted)" ;
chromosome2 GeneDB mRNA 3217985 3218947 . - . mRNA SPBC21.03c ; db_xref "SPD:13/13F09" ; systematic_id "SPBC21.03c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human THYN1 ortholog; date=20100301" ; gene "SPBC21.03c" ; product "DUF55 family protein" ; note "NOTE this is s-adenosyl l-homocysteinhydrolase in bacteria ||| splicing may be incorrect" ;
chromosome2 GeneDB mRNA 525537 526642 . + . mRNA SPBC1685.13 ; systematic_id "SPBC1685.13" ; colour "2" ; gene "SPBC1685.13 ||| fnh1" ; Alias "fhn1" ; db_xref "SPD:05/05F07" ; GO "GO:0009306; intracellular protein transport
GO:0005668; plasma membrane
GO: SF check SGD; membrane raft, MCC domain
GO:0007009; plasma membrane organization
GO:0090002; establishment of protein localization in membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YPR149W and YGR131W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Fungi only; date=20100123 ||| term=name description, Functional Homologue of Nce102; db_xref=PMID:20581291; date=20100630 ||| term=complementation, functionally complements S. cerevisiae NCE102; db_xref=PMID:20581291; date=20100630" ; primary_name "fhn1" ; product "Fhn1 plasma membrane organization protein" ;
chromosome2 GeneDB mRNA 618354 620741 . + . mRNA SPBC839.10 ; systematic_id "SPBC839.10" ; colour "2" ; gene "usp107 ||| snu71 ||| SPBC839.10" ; Alias "usp107" ; db_xref "SPD:37/37H02" ; synonym "snu71" ; GO "GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005685; snRNP U1
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17264129; date=20070201 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YGR013w; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "usp107" ; product "U1 snRNP-associated protein Usp107" ;
chromosome2 GeneDB mRNA 283755 284800 . - . mRNA SPBC1773.02c ; db_xref "SPD:06/06D08" ; systematic_id "SPBC1773.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL010W; date=19700101 ||| term=thioredoxin family; date=20081111 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; GO "GO:0005634; nucleus
GO:0008379; thioredoxin peroxidase activity
GO:0045454; cell redox homeostasis
GO:0019430; removal of superoxide radicals
GO:0042744; hydrogen peroxide catabolic process" ; gene "SPBC1773.02c" ; product "thioredoxin peroxidase (predicted)" ; EC_number "1.11.1.-" ;
chromosome2 GeneDB mRNA 847946 849321 . + . mRNA SPBC36.04 ; systematic_id "SPBC36.04" ; colour "2" ; gene "cys11 ||| cys1a ||| SPBC36.04" ; Alias "cys11" ; db_xref "SPD:19/19C02" ; synonym "cys1a" ; GO "GO:0019344; cysteine biosynthesis
GO:0004124; cysteine synthase activity
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cys11" ; product "cysteine synthase" ; EC_number "2.5.1.47" ;
chromosome2 GeneDB mRNA 2488245 2488936 . - . mRNA SPBC557.02c ; db_xref "SPD:06/06H02" ; systematic_id "SPBC557.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080116 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC557.02c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 1783861 1786248 . - . mRNA SPBC18H10.08c ; systematic_id "SPBC18H10.08c" ; colour "2" ; gene "SPBC18H10.08c ||| ubp4" ; db_xref "SPD:44/44C04" ; Alias "ubp4" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR069C and YER144C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090910 ||| term=human ortholog USP8; date=20101001" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0030133; transport vesicle
GO:0032153; cell division site
GO:0005768; endosome
GO:0005515; protein binding" ; primary_name "ubp4" ; product "ubiquitin C-terminal hydrolase Ubp4" ;
chromosome2 GeneDB mRNA 15981 16592 . - . mRNA SPBC1348.06c ; obsolete_name "SPAC1348.06c" ; systematic_id "SPBC1348.06c" ; colour "10" ; GO "GO:0034224; cellular response to zinc ion starvation
GO:0071276; cellular response to cadmium ion
GO:0055069; zinc ion homeostasis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YGL258W and YOR387C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1348.06c" ; product "conserved fungal family" ;
chromosome2 GeneDB mRNA 3298455 3301258 . - . mRNA SPBC20F10.08c ; db_xref "SPD:28/28A09" ; systematic_id "SPBC20F10.08c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YMR185W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TMCO7 ortholog; date=20100728" ; colour "10" ; gene "SPBC20F10.08c" ; product "conserved eukaryotic protein" ;
chromosome2 GeneDB mRNA 3228620 3230492 . - . mRNA SPBC19F8.01c ; systematic_id "SPBC19F8.01c" ; colour "2" ; db_xref "SPD:50/50H10" ; Alias "spn7" ; synonym "SPBC21.08c ||| mde8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005525; GTP binding" ; primary_name "spn7" ; product "septin Spn7" ;
chromosome2 GeneDB mRNA 3359226 3359940 . - . mRNA SPBC11C11.06c ; db_xref "SPD:42/42C04" ; systematic_id "SPBC11C11.06c" ; colour "8" ; GO "GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC11C11.06c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1984445 1986701 . + . mRNA SPBC1A4.05 ; systematic_id "SPBC1A4.05" ; colour "2" ; db_xref "SPD:37/37F05" ; Alias "blt1" ; GO "GO:0071341; medial cortical node
GO:0010971; positive regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19474789; date=20090826 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, characterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, BeLT; db_xref=PMID:19474789; cv=name_description; date=20090826 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=localization dependent on Cdr1; db_xref=PMID:19474789; date=20090826 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "blt1" ; product "Blt1" ;
chromosome2 GeneDB mRNA 4267441 4268156 . - . mRNA SPBC16A3.16 ; systematic_id "SPBC16A3.16" ; colour "7" ; gene "SPBC16A3.16" ; note "was previusly annotated as cwc27 in error" ; obsolete_name "cwc27" ; db_xref "SPD:01/01E11" ; GO "GO:0008535; respiratory chain complex IV assembly
GO:0005739; mitochondrion
GO:0007005; mitochondrion organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR034W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "mitochondrial inner membrane protein involved in cytochrome c oxidase assembly Pet191 (predicted)" ;
chromosome2 GeneDB mRNA 780791 782498 . - . mRNA SPBC577.15c ; systematic_id "SPBC577.15c" ; colour "2" ; gene "SPBC577.15c ||| sim3" ; Alias "sim3" ; db_xref "SPD:19/19A03" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0034080; DNA replication-independent nucleosome assembly at centromere
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0043486; histone exchange
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLL022C; db_xref=PMID:18158900; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18158900; date=20080104 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Silencng In the Middle of the centromere; date=20100727" ; primary_name "sim3" ; product "NASP family CENP-A chaperone" ;
chromosome2 GeneDB mRNA 996780 1000461 . + . mRNA SPBC146.01 ; systematic_id "SPBC146.01" ; colour "7" ; gene "SPBP35G2.15 ||| SPBC146.01 ||| med15" ; Alias "med15" ; db_xref "SPD:30/30C02" ; synonym "SPBP35G2.15" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0006366; transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "med15" ; product "mediator complex subunit Med15 (predicted)" ;
chromosome2 GeneDB mRNA 2380610 2382156 . + . mRNA SPBC19G7.16 ; systematic_id "SPBC19G7.16" ; colour "2" ; gene "iws1 ||| SPBC19G7.16" ; Alias "iws1" ; db_xref "SPD:22/22C10" ; GO "GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0008023; transcription elongation factor complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR133C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "iws1" ; product "transcription elongation factor complex subunit Iws1 (predicted)" ;
chromosome2 GeneDB mRNA 2961579 2962677 . - . mRNA SPBC2A9.08c ; systematic_id "SPBC2A9.08c" ; colour "7" ; gene "sec22 ||| SPBC2A9.08c" ; Alias "sec22" ; db_xref "SPD:11/11F01" ; GO "GO:0005484; SNAP receptor activity
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=orthologous to S. cerevisiae YLR268W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec22" ; product "SNARE Sec22 (predicted)" ;
chromosome2 GeneDB mRNA 1172732 1174210 . - . mRNA SPBC409.19c ; systematic_id "SPBC409.19c" ; colour "7" ; gene "SPBC409.19c" ; note "metaxin 1 may be the ortholog of S. cerevisiae TOM37. I have multiply aligned it and it has conserved common residues; TOM37 has a C term TMM region like many metaxin 1 family; both are mitochondrial membrane proteins involved in pre-protein import; S. cerevisiae ortholog for metaxin hasn't been identified and vice versa; can't make a Pfam family because it overlaps with glutathionine S- transferase" ; db_xref "SPD:21/21A03" ; GO "GO:0007008; outer mitochondrial membrane organization and biogenesis
GO:0001401; mitochondrial sorting and assembly machinery complex
GO:0008565; protein transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "metaxin (predicted)" ;
chromosome2 GeneDB mRNA 491987 493655 . - . mRNA SPBC902.05c ; systematic_id "SPBC902.05c" ; colour "2" ; gene "idh2 ||| glu2 ||| SPBC902.05c" ; Alias "idh2" ; db_xref "KEGG:MAP00020; ||| SPD:24/24B05" ; synonym "glu2" ; GO "GO:0006099; tricarboxylic acid cycle
GO:0006102; isocitrate metabolism
GO:0006537; glutamate biosynthesis
GO:0004449; isocitrate dehydrogenase (NAD+) activity
GO:0005759; mitochondrial matrix" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YOR136W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "idh2" ; product "isocitrate dehydrogenase (NAD+) subunit 2" ; EC_number "1.1.1.41" ;
chromosome2 GeneDB mRNA 2851245 2854114 . - . mRNA SPBP19A11.03c ; systematic_id "SPBP19A11.03c" ; colour "2" ; gene "mts4 ||| rpn1 ||| SPBP19A11.03c" ; Alias "mts4" ; db_xref "SPD:49/49F03" ; synonym "rpn1" ; GO "GO:0005634; nucleus
GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0005515; protein binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9325304; date=19700101 ||| term=orthologous to S. cerevisiae YHR027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mts4" ; product "19S proteasome regulatory subunit Mts4" ;
chromosome2 GeneDB mRNA 2266351 2267397 . - . mRNA SPBC21H7.07c ; systematic_id "SPBC21H7.07c" ; colour "2" ; gene "his5 ||| SPBC21H7.07c" ; Alias "his5" ; db_xref "SPD:31/31G03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR202W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000105; histidine biosynthesis
GO:0004424; imidazoleglycerol-phosphate dehydratase activity" ; primary_name "his5" ; product "imidazoleglycerol-phosphate dehydratase His5" ; EC_number "4.2.1.19" ;
chromosome2 GeneDB mRNA 3183727 3186148 . - . mRNA SPBC776.06c ; db_xref "SPD:36/36D09" ; systematic_id "SPBC776.06c" ; colour "7" ; GO "GO:0051666; actin cortical patch localization
GO:0030010; establishment of cell polarity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR129C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC776.06c" ; product "Arf3/6 docking factor (predicted)" ;
chromosome2 GeneDB mRNA 3939420 3941624 . + . mRNA SPBC26H8.01 ; systematic_id "SPBC26H8.01" ; colour "2" ; gene "thi2 ||| nmt2 ||| SPBC26H8.01" ; note "Match to PF01946 Thi4, Thi4 family Score 628.69" ; Alias "thi2" ; db_xref "SPD:40/40B12" ; synonym "nmt2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR144W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0018131; oxazole or thiazole biosynthesis
GO:0009228; thiamin biosynthesis
GO:0005739; mitochondrion" ; primary_name "thi2" ; product "thiazole biosynthetic enzyme" ;
chromosome2 GeneDB mRNA 2591755 2593357 . - . mRNA SPBC2G5.07c ; systematic_id "SPBC2G5.07c" ; colour "2" ; gene "rpc25 ||| SPBC2G5.07c" ; Alias "rpc25" ; db_xref "SPD:32/32B01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL144C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006384; transcription initiation from RNA polymerase III promoter" ; primary_name "rpc25" ; product "DNA-directed RNA polymerase III complex subunit Rpc25" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB mRNA 3248812 3250002 . - . mRNA SPBC25H2.15 ; db_xref "SPD:44/44A02" ; systematic_id "SPBC25H2.15" ; GO "GO:0030490; maturation of SSU-rRNA" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human PDCD2 ortholog; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; product "SSU-rRNA maturation protein Tsr4 homolog 1 (predicted)" ;
chromosome2 GeneDB mRNA 2439029 2442660 . + . mRNA SPBC21D10.05c ; systematic_id "SPBC21D10.05c" ; colour "2" ; gene "ucp3 ||| soc2 ||| SPBC21D10.05c" ; Alias "ucp3" ; db_xref "SPD:37/37B10" ; synonym "soc2" ; GO "GO:0030479; actin cortical patch
GO:0008060; ARF GTPase activator activity
GO:0031593; polyubiquitin binding
GO:0043130; ubiquitin binding
GO:0006897; endocytosis
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL181W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, Suppressor Of Cdc2; db_xref=PMID:17072883; date=20100629 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "ucp3" ; product "GTPase activating protein Ucp3 (predicted)" ;
chromosome2 GeneDB mRNA 4370000 4372545 . + . mRNA SPBC1539.05 ; systematic_id "SPBC1539.05" ; colour "7" ; gene "SPBC1539.05 ||| cog3" ; Alias "cog3" ; db_xref "SPD:46/46H08" ; GO "GO:0006886; intracellular protein transport
GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER157W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cog3" ; product "Golgi transport complex subunit Cog3 (predicted)" ;
chromosome2 GeneDB mRNA 3121286 3122404 . - . mRNA SPBC4C3.08 ; systematic_id "SPBC4C3.08" ; colour "7" ; gene "SPBC4C3.08 ||| mug136" ; Alias "mug136" ; db_xref "SPD:17/17F04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YOR320C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0008375; acetylglucosaminyltransferase activity
GO:0006487; protein amino acid N-linked glycosylation
GO:0005794; Golgi apparatus" ; primary_name "mug136" ; product "acetylglucosaminyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB mRNA 1974488 1975645 . - . mRNA SPBC1A4.02c ; systematic_id "SPBC1A4.02c" ; colour "2" ; gene "leu1 ||| SPBC1A4.02c ||| SPBC1E8.07c" ; Alias "leu1" ; db_xref "SPD:40/40C11" ; synonym "SPBC1E8.07c" ; GO "GO:0003862; 3-isopropylmalate dehydrogenase activity
GO:0009098; leucine biosynthesis
GO:0005829; cytosol" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "leu1" ; product "3-isopropylmalate dehydrogenase Leu1" ; EC_number "1.1.1.85" ;
chromosome2 GeneDB mRNA 2403548 2405039 . + . mRNA SPBP18G5.03 ; systematic_id "SPBP18G5.03" ; colour "2" ; gene "SPBP18G5.03 ||| toc1" ; Alias "toc1" ; db_xref "SPD:50/50F01" ; GO "GO:0031931; TORC 1 complex
GO:0031929; TOR signaling pathway" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "toc1" ; product "Tor complex Tor2 interacting protein 1" ;
chromosome2 GeneDB mRNA 3148510 3149656 . + . mRNA SPBC405.05 ; db_xref "SPD:03/03F02" ; systematic_id "SPBC405.05" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC405.05" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3926990 3928037 . + . mRNA SPBC1604.03c ; db_xref "SPD:14/14E03" ; systematic_id "SPBC1604.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100126 ||| term=species distribution, conserved in Fungi only; date=20100126 ||| term=species distribution, conserved in Eukaryotes; date=20100126 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100126" ; colour "10" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 3333545 3334478 . + . mRNA SPBC17D1.04 ; systematic_id "SPBC17D1.04" ; colour "2" ; gene "SPBC17D1.04 ||| acr1" ; db_xref "SPD:43/43B05" ; Alias "acr1" ; GO "GO:0000500; RNA polymerase I upstream activating factor complex
GO:0005730; nucleolus
GO:0034503; protein localization to nucleolar rDNA repeats
GO:0034613; cellular protein localization
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18362178; date=20080602 ||| term=orthologous to S. cerevisiae YMR270C; db_xref=PMID:18362178; date=20080602 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, Accumulation of Condensin at RDNA; date=20100723" ; primary_name "acr1" ; product "upstream activation factor complex subunit Acr1" ;
chromosome2 GeneDB mRNA 3582033 3583826 . - . mRNA SPBC418.01c ; systematic_id "SPBC418.01c" ; colour "7" ; gene "his4 ||| SPBC887.20c ||| SPBC418.01c" ; Alias "his4" ; db_xref "SPD:45/45F09" ; synonym "SPBC887.20c" ; GO "GO:0000105; histidine biosynthesis
GO:0000107; imidazoleglycerol-phosphate synthase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, bifunctional enzyme; cv=cat_act; date=19700101 ||| term=orthologous to S. cerevisiae YBR248C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "his4" ; product "imidazoleglycerol-phosphate synthase (predicted)" ; EC_number "2.4.2.-" ;
chromosome2 GeneDB mRNA 3001182 3003211 . + . mRNA SPBC2D10.18 ; systematic_id "SPBC2D10.18" ; colour "2" ; gene "abc1 ||| coq8 ||| SPBC2D10.18" ; Alias "abc1" ; db_xref "SPD:33/33E04" ; synonym "coq8" ; GO "GO:0005743; mitochondrial inner membrane
GO:0016209; antioxidant activity
GO:0016301; kinase activity
GO:0019646; aerobic electron transport chain
GO:0009060; aerobic respiration
GO:0070219; cellular sulfide ion homeostasis
GO:0006119; oxidative phosphorylation
GO:0006790; sulfur metabolism
GO:0019418; sulphide oxidation
GO:0006744; ubiquinone biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL119W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, growth defect, requires antioxidant for growth; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to H202; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to copper ions; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=complementation, functionally complements S. cerevisiae COQ8; db_xref=PMID:8668131; date=20101012" ; primary_name "abc1" ; product "ABC1 kinase family ubiquinone biosynthesis protein Abc1/Coq8" ;
chromosome2 GeneDB mRNA 2238671 2240746 . + . mRNA SPBC15C4.02 ; systematic_id "SPBC15C4.02" ; colour "10" ; gene "SPBC15C4.02" ; note "first exon may be incorrect, unsupported" ; db_xref "SPD:46/46D01" ; GO "GO:0005739; mitochondrion
GO:0016301; kinase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR253W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ADCK1 ortholog; date=20100727" ; product "ABC1 kinase family protein" ;
chromosome2 GeneDB mRNA 4214973 4216075 . + . mRNA SPBC16G5.01 ; systematic_id "SPBC16G5.01" ; colour "2" ; gene "rpn12 ||| mts3 ||| SPBC342.07 ||| SPBC16G5.01" ; Alias "rpn12" ; db_xref "SPD:32/32A04" ; synonym "mts3 ||| SPBC342.07" ; GO "GO:0008541; proteasome regulatory particle, lid subcomplex
GO:0006511; ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR052W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpn12" ; product "19S proteasome regulatory subunit Rpn12" ;
chromosome2 GeneDB mRNA 2755442 2756278 . + . mRNA SPBC336.08 ; systematic_id "SPBC336.08" ; colour "2" ; gene "spc24 ||| SPBC336.08" ; Alias "spc24" ; db_xref "SPD:09/09F02" ; GO "GO:0031617; NMS complex
GO:0031262; Ndc80 complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR117C; date=19700101 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spc24" ; product "spindle pole body protein Spc24" ;
chromosome2 GeneDB mRNA 878471 882049 . - . mRNA SPBC713.07c ; db_xref "SPD:49/49B10" ; systematic_id "SPBC713.07c" ; colour "7" ; GO "GO:0000329; vacuolar membrane
GO:0000298; endopolyphosphatase activity
GO:0006797; polyphosphate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR452W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC713.07c" ; product "vacuolar polyphosphatase (predicted)" ;
chromosome2 GeneDB mRNA 2141252 2142836 . + . mRNA SPBC1711.05 ; systematic_id "SPBC1711.05" ; colour "7" ; gene "SPBC1711.05" ; note "repeat region consensus DSESESSSEDSDSSSSSS ~7 copies?" ; db_xref "SPD:21/21A08" ; GO "GO:0005730; nucleolus
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100208" ; product "nucleocytoplasmic transport chaperone Srp40 (predicted)" ;
chromosome2 GeneDB mRNA 1438044 1440350 . + . mRNA SPBP22H7.04 ; obsolete_name "pi027 ||| SPACTOKYO_453.08" ; db_xref "SPD:41/41F04" ; systematic_id "SPBP22H7.04" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBP22H7.04" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2680226 2681688 . - . mRNA SPBC3E7.11c ; db_xref "SPD:22/22C03" ; systematic_id "SPBC3E7.11c" ; colour "10" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER048C and YIR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC3E7.11c" ; product "DNAJ protein Caj1/Djp1-type (predicted)" ;
chromosome2 GeneDB mRNA 194678 195989 . + . mRNA SPBC1198.12 ; systematic_id "SPBC1198.12" ; colour "2" ; db_xref "SPD:22/22H02" ; Alias "mfr1" ; synonym "SPBC660.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=Cdc20/Fizzy subfamily; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0051487; anaphase-promoting complex activation during meiotic cell cycle
GO:0007126; meiosis
GO:0007138; meiotic anaphase II
GO:0030437; sporulation (sensu Fungi)" ; primary_name "mfr1" ; product "fizzy-related protein Mfr1" ;
chromosome2 GeneDB mRNA 4011197 4014826 . - . mRNA SPBC3B9.15c ; systematic_id "SPBC3B9.15c" ; colour "2" ; db_xref "SPD:30/30D02" ; Alias "scp1" ; synonym "scap" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060413 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060413 ||| term=disease associated, Niemann- Pick disease; db_xref=KOG:1933; date=20060918 ||| term=orthologous to S. cerevisiae YPL006W (KOGS); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, SREBP Cleavage activating Protein; cv=name_description; date=20100308 ||| term=phenotype, increased Sre1 cleavage; allele=F245R|Y247P|Y249N|R259H|A260V|K261I|G263L|L264P|F28 6L|V326R|F369R|L380R|F384VF385R|V388G|L389P|S390LD392E|I39 3P|R394P|R395L|E397PL398W; cv=phenotype; db_xref=PMID:18503029; date=20100308 ||| term=target is Sre1; db_xref=PMID:19520858; date=20100825" ; GO "GO:0032936; SREBP-SCAP complex
GO:0071458; endoplasmic reticulum membrane, cytosolic side
GO:0030173; integral to Golgi membrane
GO:0032810; sterol response element binding
GO:0032935; sterol sensor activity
GO:0006994; activation of transcription in response to sterol depletion
GO:0035437; maintence of protein localization in endoplasmic reticulum
GO:0006800; oxygen and reactive oxygen species metabolic process
GO:0070452; positive regulation of ergosterol biosynthetic process
GO:0071073; positive regulation of phospholipid biosynthetic process
GO:0019432; positive regulation of triglyceride biosynthetic process
GO:0050821; regulation of protein stability
GO:0071456; cellular response to hypoxia
GO:0035103; sterol regulatory element binding- protein cleavage" ; primary_name "scp1" ; product "Sre1 cleavage activating protein, Scap Scp1" ;
chromosome2 GeneDB mRNA 2586431 2588746 . + . mRNA SPBC2G5.05 ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00710; ||| SPD:27/27F10" ; systematic_id "SPBC2G5.05" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR074C and YBR117C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009052; pentose-phosphate shunt, non-oxidative branch
GO:0004802; transketolase activity
GO:0005737; cytoplasm" ; gene "SPBC2G5.05" ; product "transketolase (predicted)" ; EC_number "2.2.1.1" ;
chromosome2 GeneDB mRNA 701866 705661 . + . mRNA SPBPJ4664.04 ; db_xref "SPD:49/49G07" ; systematic_id "SPBPJ4664.04" ; colour "7" ; GO "GO:0030126; COPI vesicle coat
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL145C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPBPJ4664.04" ; product "coatomer alpha subunit (predicted)" ;
chromosome2 GeneDB mRNA 1071571 1073557 . - . mRNA SPBC1734.07c ; db_xref "SPD:36/36H06" ; systematic_id "SPBC1734.07c" ; colour "7" ; GO "GO:0006886; intracellular protein transport
GO:0030008; TRAPP complex
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006914; autophagy
GO:0030242; peroxisome degradation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1734.07c" ; product "TRAPP complex subunit Trs85 (predicted)" ;
chromosome2 GeneDB mRNA 2501335 2502658 . - . mRNA SPBC365.02c ; systematic_id "SPBC365.02c" ; colour "7" ; gene "cox10 ||| SPBC365.02c" ; Alias "cox10" ; db_xref "SPD:43/43H07" ; GO "GO:0008495; protoheme IX farnesyltransferase activity
GO:0005743; mitochondrial inner membrane
GO:0008535; cytochrome c oxidase complex assembly
GO:0006784; heme a biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Leigh syndrome; date=20060821 ||| term=orthologous to S. cerevisiae YPL172C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091218" ; primary_name "cox10" ; product "protoheme IX farnesyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 2032842 2034907 . - . mRNA SPBP23A10.15c ; systematic_id "SPBP23A10.15c" ; colour "7" ; gene "qcr1 ||| mas1 ||| SPBP23A10.15c" ; Alias "qcr1" ; db_xref "SPD:21/21C09" ; synonym "mas1" ; GO "GO:0017087; mitochondrial processing peptidase complex
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0004222; metalloendopeptidase activity
GO:0009060; aerobic respiration
GO:0006627; mitochondrial protein processing
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR163C and YBL045C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "qcr1" ; product "mitochondrial processing peptidase (MPP) complex beta subunit Qcr1 (predicted)" ; EC_number "3.4.24.64" ;
chromosome2 GeneDB mRNA 2914828 2915714 . - . mRNA SPBC1703.01c ; systematic_id "SPBC1703.01c" ; colour "7" ; gene "SPBP4H10.22c ||| SPBC1703.01c" ; Alias "SPBP4H10.22c" ; db_xref "SPD:50/50B11" ; synonym "SPBP4H10.22c" ; GO "GO:0006364; rRNA processing
GO:0008033; tRNA processing
GO:0005655; nucleolar ribonuclease P complex
GO:0000172; ribonuclease MRP complex
GO:0000171; ribonuclease MRP activity
GO:0004526; ribonuclease P activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR257W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBP4H10.22c" ; product "RNase P and RNase MRP subunit (predicted)" ;
chromosome2 GeneDB mRNA 1907893 1909923 . + . mRNA SPBP16F5.06 ; db_xref "SPD:33/33A06" ; systematic_id "SPBP16F5.06" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YOL144W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBP16F5.06" ; product "ribosome biogenesis protein Nop6 (predicted)" ;
chromosome2 GeneDB mRNA 3667996 3669975 . - . mRNA SPBP8B7.18c ; db_xref "SPD:34/34G04" ; systematic_id "SPBP8B7.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TENA/THI domain; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPR121W and YPL258C and YOL055C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBP8B7.18c" ; product "TENA/THI family protein" ;
chromosome2 GeneDB mRNA 4283938 4285456 . + . mRNA SPBC16A3.08c ; db_xref "SPD:18/18H01" ; systematic_id "SPBC16A3.08c" ; colour "7" ; GO "GO:0042162; telomeric DNA binding
GO:0000723; telomere maintenance
GO:0031929; TOR signaling pathway
GO:0006448; regulation of tranlational elongation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR150W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618" ; gene "SPBC16A3.08c" ; product "Stm1 homolog (predicted)" ;
chromosome2 GeneDB mRNA 4001626 4002673 . - . mRNA SPBC3B9.08c ; db_xref "SPD:09/09F05" ; systematic_id "SPBC3B9.08c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC3B9.08c" ; product "Mago-nashi homolog (predicted)" ; note "non-consensus gc donor" ;
chromosome2 GeneDB mRNA 3893113 3895256 . + . mRNA SPBC1604.20c ; systematic_id "SPBC1604.20c" ; colour "2" ; gene "tea2 ||| klp4 ||| SPBC1604.20c" ; Alias "tea2" ; db_xref "SPD:26/26D10" ; synonym "klp4" ; GO "GO:0051285; cell cortex of cell tip
GO:0005737; cytoplasm
GO:0015630; microtubule cytoskeleton
GO:0008574; plus-end-directed microtubule motor activity
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0007163; establishment and/or maintenance of cell polarity
GO:0007018; microtubule-based movement
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, branched; qualifier=deletion|low_penetrance; db_xref=PMID:8522609; date=20100731 ||| term=phenotype, cell morphology, curved; qualifier=deletion; db_xref=PMID:8522609; date=20100731 ||| term=kinesin Kip2 subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YPL155C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, filament morphology aberrant; qualifier=deletion; db_xref=PMID:19542312; date=20090706 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201 ||| term=name description, Tip Elongation Aberrant; cv=name_description; date=19700101" ; primary_name "tea2" ; product "kinesin-like protein Tea2" ;
chromosome2 GeneDB mRNA 1448815 1450155 . - . mRNA SPBP22H7.09c ; systematic_id "SPBP22H7.09c" ; colour "2" ; gene "mis15 ||| SPBP22H7.09c" ; Alias "mis15" ; obsolete_name "pi022 ||| SPACTOKYO_453.12" ; db_xref "SPD:50/50F02" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0000939; inner kinetochore of condensed chromosome
GO:0031055; chromatin remodeling at centromere
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0031511; Mis6-Sim4 complex
GO:0051382; kinetochore assembly
GO:0005634; nucleus
GO:0000779; condensed chromosome, pericentric region
GO:0034080; DNA replication-independent nucleosome assembly at centromere" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR254W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:15369671; date=20090907 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis15" ; product "kinetochore protein Mis15" ;
chromosome2 GeneDB mRNA 2712207 2714079 . + . mRNA SPBC4F6.12 ; systematic_id "SPBC4F6.12" ; colour "2" ; gene "SPBC4F6.12 ||| pxl1" ; Alias "pxl1" ; db_xref "SPD:21/21C07" ; GO "; contractile ring
GO:0005826; contractile ring
GO:0031097; medial ring
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0000916; contractile ring contraction involved in cytokinesis
GO:0000915; cytokinesis, contractile ring formation
GO:0000915; cytokinesis, contractile ring formation
GO:0000915; cytokinesis, contractile ring formation
GO:0034259; negative regulation of Rho GTPase activity
GO:0035024; negative regulation of Rho protein signal transduction
GO:0035023; regulation of Rho protein signal transduction
GO:0071775; regulation of cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18256290; date=20080211 ||| term=phenotype, cytokinesis defects, splitting of the actinomyosin ring; qualifier=deletion|during_anaphase_B; cv=phenotype; db_xref=PMID:18272786; date=20080731 ||| term=orthologous to S. cerevisiae YKR090W; date=19700101 ||| term=LIM domain; qualifier=required; db_xref=PMID:18256290; date=20080211 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, N-terminal region is sufficent for localization; db_xref=PMID:18256290; date=20080211 ||| term=misc, present in a complex with Rlc1 and Cdc15; db_xref=PMID:18256290; cv=misc; date=20080211" ; primary_name "pxl1" ; product "paxillin-like protein Pxl1" ;
chromosome2 GeneDB mRNA 757566 758197 . - . mRNA SPBC577.05c ; systematic_id "SPBC577.05c" ; colour "2" ; gene "rec27 ||| mug41 ||| SPBC577.05c" ; Alias "rec27" ; db_xref "SPD:42/42E10" ; synonym "mug41" ; GO "GO:0045132; meiotic chromosome segregation
GO:0007131; meiotic recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "rec27" ; product "meiotic recombination protein Rec27" ;
chromosome2 GeneDB mRNA 1350859 1354228 . - . mRNA SPBC27B12.12c ; db_xref "SPD:33/33G12" ; systematic_id "SPBC27B12.12c" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0015095; magnesium ion transporter activity
GO:0015693; magnesium ion transport
GO:0010045; response to nickel ion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL064W and YOL130W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC27B12.12c" ; product "CorA family magnesium ion transporter (predicted)" ;
chromosome2 GeneDB mRNA 1529066 1531381 . + . mRNA SPBC83.11 ; db_xref "SPD:20/20G04" ; systematic_id "SPBC83.11" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005783; endoplasmic reticulum
GO:0035436; triose phosphate transmembrane transport
GO:0071917; triose-phosphate transmembrane transporter activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL193W and YOR307C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC83.11" ; product "ER triose phosphate transmembrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 1356208 1357850 . + . mRNA SPBC27B12.13 ; systematic_id "SPBC27B12.13" ; colour "7" ; gene "tom40 ||| SPBC27B12.13 ||| SPBC8D2.22" ; Alias "tom40" ; db_xref "SPD:41/41H03" ; synonym "SPBC8D2.22" ; GO "GO:0015450; protein translocase activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0005742; mitochondrial outer membrane translocase complex
GO:0030150; protein import into mitochondrial matrix" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR203W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tom40" ; product "mitochondrial TOM complex subunit Tom40 (predicted)" ;
chromosome2 GeneDB mRNA 2759562 2761165 . + . mRNA SPBC336.11 ; systematic_id "SPBC336.11" ; colour "7" ; gene "SPBC336.11 ||| vps52" ; Alias "vps52" ; db_xref "SPD:44/44H03" ; GO "GO:0000938; GARP complex
GO:0016192; vesicle-mediated transport
GO:0006896; Golgi to vacuole transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0030029; actin filament-based process
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR484W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "vps52" ; product "GARP complex subunit Vps52 (predicted)" ;
chromosome2 GeneDB mRNA 3276674 3279531 . - . mRNA SPBC25H2.03 ; db_xref "SPD:29/29E07" ; systematic_id "SPBC25H2.03" ; colour "7" ; GO "GO:0006644; phospholipid metabolism
GO:0000011; vacuole inheritance
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0048015; phosphoinositide-mediated signaling
GO:0030384; phosphoinositide metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YLR386W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC25H2.03" ; product "vacuolar protein involved in phosphoinositide metabolism (predicted)" ;
chromosome2 GeneDB mRNA 1015936 1019054 . - . mRNA SPBC146.09c ; systematic_id "SPBC146.09c" ; colour "2" ; gene "lsd1 ||| SPBC146.09c ||| swm1 ||| saf110" ; Alias "lsd1" ; db_xref "SPD:47/47G02" ; synonym "swm1 ||| saf110" ; GO "GO:0033193; Lsd1/2 complex
GO:0000790; nuclear chromatin
GO:0032454; histone demethylase activity (H3-K9 specific)
GO:0031491; nucleosome binding
GO:0009300; antisense RNA transcription
GO:0006338; chromatin remodeling
GO:0033169; histone H3-K9 demethylation
GO:0045893; positive regulation of transcription, DNA-dependent
GO:0040020; regulation of meiosis
GO:0034605; cellular response to heat
GO:0034649; histone demethylase activity (H3- monomethyl-K4 specific)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16990277; date=20070421 ||| term=HMG box; qualifier=inferred from context; date=20070421 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070421 ||| term=human KDM1B ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17371846; date=20090110" ; primary_name "lsd1" ; product "histone demethylase SWIRM1" ;
chromosome2 GeneDB mRNA 1662947 1664181 . + . mRNA SPBC21B10.05c ; systematic_id "SPBC21B10.05c" ; colour "2" ; gene "pop3 ||| wat1 ||| SPBC21B10.05c" ; Alias "pop3" ; db_xref "SPD:40/40B09" ; synonym "wat1" ; GO "GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0006397; mRNA processing
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0031931; TORC 1 complex
GO:0031931; TORC 1 complex
GO:0031929; TOR signaling pathway
GO:0031932; TORC 2 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL006W; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; evidence=IDA; date=20071228 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213" ; primary_name "pop3" ; product "WD repeat protein Pop3" ;
chromosome2 GeneDB mRNA 1208694 1210856 . + . mRNA SPBC725.04 ; db_xref "SPD:36/36B05" ; systematic_id "SPBC725.04" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human HACL1 ortholog; date=20100727" ; gene "SPBC725.04" ; product "oxalyl-CoA decarboxylase (predicted)" ;
chromosome2 GeneDB mRNA 3295648 3298451 . + . mRNA SPBC20F10.07 ; db_xref "SPD:38/38B08" ; systematic_id "SPBC20F10.07" ; colour "10" ; GO "GO:0016020; membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GRAM domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR072W and YFL042C and YHR080C and YDR326C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC20F10.07" ; product "GRAM domain protein" ;
chromosome2 GeneDB mRNA 1364292 1364954 . - . mRNA SPBC8D2.03c ; systematic_id "SPBC8D2.03c" ; colour "2" ; gene "hhf2 ||| ams3 ||| h4.2 ||| SPBC8D2.03c" ; Alias "hhf2" ; db_xref "SPD:31/31C07" ; synonym "ams3 ||| h4.2" ; GO "GO:0003677; DNA binding
GO:0006334; nucleosome assembly
GO:0000788; nuclear nucleosome" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR009C and YNL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human HIST1H4I ortholog; date=20100217 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K20; cv=pt_mod; date=20100311" ; primary_name "hhf2" ; product "histone H4 h4.2" ;
chromosome2 GeneDB mRNA 1055529 1056395 . + . mRNA SPBC337.14 ; systematic_id "SPBC337.14" ; colour "2" ; gene "rpb4 ||| SPBC337.14" ; Alias "rpb4" ; db_xref "SPD:39/39H10" ; GO "GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0003899; DNA-directed RNA polymerase activity
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10523639; date=19700101 ||| term=orthologous to S. cerevisiae YJL140W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16972065; date=20090110" ; primary_name "rpb4" ; product "DNA-directed RNA polymerase II complex subunit Rpb4" ;
chromosome2 GeneDB mRNA 3887445 3888278 . - . mRNA SPBC211.08c ; db_xref "SPD:10/10D03" ; systematic_id "SPBC211.08c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR158C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000175; 3'-5'-exoribonuclease activity
GO:0006364; rRNA processing
GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0061013; nuclear-transcribed mRNA catabolism" ; gene "SPBC211.08c" ; product "exosomal 3'-5' exoribonuclease, PH-like (predicted)" ; EC_number "3.1.13.-" ;
chromosome2 GeneDB mRNA 1321113 1323256 . - . mRNA SPBC27B12.01c ; systematic_id "SPBC27B12.01c" ; colour "7" ; gene "mmm1 ||| SPBC30B4.09c ||| SPBC27B12.01c" ; note "alternative splicing may exist using internal donors at positions 22869 and 22968" ; Alias "mmm1" ; db_xref "SPD:18/18B07" ; synonym "SPBC30B4.09c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL006W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0032865; Mdm10/Mdm12/Mmm1 complex
GO:0005741; mitochondrial outer membrane
GO:0000002; mitochondrial genome maintenance
GO:0000001; mitochondrion inheritance
GO:0007005; mitochondrion organization and biogenesis
GO:0045040; protein import into mitochondrial outer membrane" ; primary_name "mmm1" ; product "Mdm10/Mdm12/Mmm1 complex subunit Mmm1 (predicted)" ;
chromosome2 GeneDB mRNA 4312489 4313973 . + . mRNA SPBC543.07 ; systematic_id "SPBC543.07" ; colour "2" ; db_xref "SPD:32/32E04" ; Alias "pek1" ; synonym "skh1 ||| mkk1" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mkh1-Pek1-Spm1 MAP kinase; cv=pathway; db_xref=PMID:10591634; date=19700101 ||| term=orthologous to S. cerevisiae YOR231W and YPL140C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10365961; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0000165; MAPKKK cascade
GO:0004708; MAP kinase kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0008360; regulation of cell shape
GO:0006883; sodium ion homeostasis
GO:0033205; cell cycle cytokinesis
GO:0005737; cytoplasm
GO:0030428; cell septum
GO:0031505; cell wall organization and biogenesis
GO:0050850; positive regulation of calcium- mediated signaling
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "pek1" ; product "MAP kinase kinase Pek1" ;
chromosome2 GeneDB mRNA 3784047 3784488 . - . mRNA SPBC31F10.15c ; systematic_id "SPBC31F10.15c" ; colour "7" ; gene "atp15 ||| SPBC31F10.15c" ; Alias "atp15" ; db_xref "SPD:01/01C06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL271W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005756; proton-transporting ATP synthase, central stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0042776; mitochondrial ATP synthesis coupled proton transport" ; primary_name "atp15" ; product "F0-ATPase epsilon subunit (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB mRNA 3279821 3282173 . - . mRNA SPBC25H2.02 ; systematic_id "SPBC25H2.02" ; colour "7" ; gene "ths1 ||| trs1 ||| SPBC25H2.02" ; note "Has been mapped to YIL078W rather than YKL194C due to same domain combinations" ; Alias "trs1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:39/39F07" ; synonym "ths1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL078W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006435; threonyl-tRNA aminoacylation
GO:0004829; threonine-tRNA ligase activity
GO:0005737; cytoplasm" ; primary_name "trs1" ; product "cytoplasmic threonine-tRNA ligase Trs1 (predicted)" ; EC_number "6.1.1.3" ;
chromosome2 GeneDB mRNA 2059792 2060403 . + . mRNA SPBC29A3.12 ; systematic_id "SPBC29A3.12" ; colour "7" ; gene "rps902 ||| rps9-2 ||| rps9b ||| SPBC29A3.12" ; Alias "rps902" ; db_xref "SPD:39/39H11" ; synonym "rps9-2 ||| rps9b" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL081W and YBR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps902" ; product "40S ribosomal protein S9 (predicted)" ;
chromosome2 GeneDB mRNA 2166226 2169858 . + . mRNA SPBC1711.17 ; systematic_id "SPBC1711.17" ; colour "7" ; gene "prp16 ||| SPBC1711.17 ||| SPBC17G9.01" ; Alias "prp16" ; db_xref "SPD:48/48D04" ; synonym "SPBC17G9.01" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005681; spliceosome complex
GO:0000350; generation of catalytic spliceosome for second transesterification step
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp16" ; product "ATP-dependent RNA helicase Prp16 (predicted)" ;
chromosome2 GeneDB mRNA 1864777 1865654 . - . mRNA SPBC3H7.10 ; db_xref "SPD:10/10G07" ; systematic_id "SPBC3H7.10" ; colour "7" ; GO "GO:0033588; Elongator holoenzyme complex
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR312W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC3H7.10" ; product "elongator complex subunit Elp6 (predicted)" ;
chromosome2 GeneDB mRNA 219182 221277 . - . mRNA SPBC660.13c ; systematic_id "SPBC660.13c" ; colour "2" ; gene "ssb1 ||| rpa1 ||| rad11 ||| SPBC660.13c" ; Alias "ssb1" ; db_xref "SPD:46/46B02" ; synonym "rpa1 ||| rad11" ; GO "GO:0005662; DNA replication factor A complex
GO:0000781; chromosome, telomeric region
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003697; single-stranded DNA binding
GO:0006281; DNA repair
GO:0006269; DNA replication, synthesis of RNA primer
GO:0006261; DNA replication
GO:0000724; double-strand break repair via homologous recombination
GO:0000723; telomere maintenance
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9111307; date=20061127 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9111307; date=20100712 ||| term=phenotype, mononucleate; db_xref=PMID:9111307; qualifier=deletion; date=20100712 ||| term=phenotype, cut; qualifier=deletion; db_xref=PMID:9111307; date=20100712 ||| term=phenotype, septation defects; qualifier=deletion; db_xref=PMID:9111307; date=20100712 ||| term=gene expression, expressed during S phase; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YAR007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; primary_name "ssb1" ; product "DNA replication factor A subunit Ssb1" ;
chromosome2 GeneDB mRNA 1118492 1119315 . + . mRNA SPBC1709.09 ; systematic_id "SPBC1709.09" ; colour "2" ; gene "SPBC1709.09" ; Alias "rrf1" ; db_xref "SPD:43/43A07" ; GO "GO:0005739; mitochondrion
GO:0008079; translation termination factor activity
GO:0070126; mitochondrial translational termination
GO:0032790; ribosome disassembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR038W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complemented by human MRR1; db_xref=PMID:18782833; date=20101012 ||| term=human MRR1 ortholog; db_xref=PMID:18782833; date=20101012 ||| term=phenotype, respiratory defect; db_xref=PMID:18782833; date=20101012" ; primary_name "rrf1" ; product "mitochondrial translation termination factor Rrf1" ;
chromosome2 GeneDB mRNA 3211337 3212155 . + . mRNA SPBC776.17 ; db_xref "SPD:41/41F03" ; systematic_id "SPBC776.17" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC776.17" ; product "rRNA processing protein Rrp7 (predicted)" ;
chromosome2 GeneDB mRNA 1224974 1227008 . - . mRNA SPBC725.11c ; systematic_id "SPBC725.11c" ; colour "2" ; gene "php2 ||| SPBC725.11c" ; Alias "php2" ; db_xref "SPD:32/32C08" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006109; regulation of carbohydrate metabolism
GO:0016602; CCAAT-binding factor complex
GO:0005634; nucleus
GO:0033217; regulation of transcription from RNA polymerase II promoter in response to iron ion starvation
GO:0043565; sequence-specific DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL237C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=DNA binding specificity, complex binds 5'-CCAAT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates pcl1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates sdh41; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates isa1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates fbp1; db_xref=PMID:11238405; date=20100302" ; primary_name "php2" ; product "CCAAT-binding factor complex subunit Php2" ;
chromosome2 GeneDB mRNA 2928014 2930344 . + . mRNA SPBC1703.07 ; systematic_id "SPBC1703.07" ; colour "7" ; gene "SPBC1703.07" ; note "Direction of reaction forming acetyl-CoA and oxaloacetate (PMID:10794176)" ; db_xref "KEGG:MAP00020; ||| SPD:37/37F10" ; GO "GO:0005737; cytoplasm
GO:0003878; ATP citrate synthase activity
GO:0006085; acetyl-CoA biosynthesis
GO:0006101; citrate metabolism
GO:0006633; fatty acid biosynthesis
GO:0006099; tricarboxylic acid cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; product "ATP citrate synthase subunit 1 (predicted)" ; EC_number "2.3.3.8" ;
chromosome2 GeneDB mRNA 586476 588182 . + . mRNA SPBC354.15 ; systematic_id "SPBC354.15" ; colour "2" ; gene "fap1 ||| SPBC354.15" ; Alias "fap1" ; db_xref "SPD:19/19G07" ; GO "GO:0051700; fructosyl-amino acid oxidase activity
GO:0019477; L-lysine catabolism
GO:0050660; FAD binding
GO:0050031; L-pipecolate oxidase activity
GO:0051699; proline oxidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fap1" ; product "L-pipecolate oxidase" ;
chromosome2 GeneDB mRNA 3329800 3331562 . + . mRNA SPBC17D1.02 ; systematic_id "SPBC17D1.02" ; colour "7" ; gene "SPBC17D1.02" ; Alias "dph2" ; db_xref "SPD:35/35B04" ; GO "GO:0017183; peptidyl-diphthamide biosynthesis from peptidyl-histidine
GO:0005737; cytoplasm
GO:0006417; regulation of translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human DPH2 ortholog; date=20100120" ; primary_name "dph2" ; product "diphthamide biosynthesis protein (predicted)" ;
chromosome2 GeneDB mRNA 1723013 1724080 . + . mRNA SPBC2F12.09c ; systematic_id "SPBC2F12.09c" ; colour "2" ; gene "atf21 ||| SPBC2F12.09c" ; Alias "atf21" ; db_xref "SPD:32/32D09" ; GO "GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016563; transcriptional activator activity
GO:0010673; positive regulation of transcription from RNA polymerase II promoter, meiotic
GO:0040020; regulation of meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bZIP (basic leucine zipper) transcription factor family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080721 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:12161753; date=20090110 ||| term=Atf-CREB subfamily; date=20100826" ; primary_name "atf21" ; product "transcription factor, Atf-CREB family Atf21" ;
chromosome2 GeneDB mRNA 1164170 1165049 . + . mRNA SPBC409.23 ; Alias "tam7" ; systematic_id "SPBC409.23" ; colour "10" ; controlled_curation "term=orthologous to S. cerevisiae YLR099W-A; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; primary_name "tam7" ; gene "SPBC409.23" ; product "conserved fungal protein" ; note "S. cerevisiae deletion is inviable, is likely to be more broadly conserved" ;
chromosome2 GeneDB mRNA 3799447 3801120 . - . mRNA SPBC21C3.02c ; systematic_id "SPBC21C3.02c" ; colour "2" ; gene "dep1 ||| SPBC21C3.02c" ; Alias "dep1" ; db_xref "SPD:23/23G11" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0006355; regulation of transcription, DNA- dependent
GO:0016575; histone deacetylation
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dep1" ; product "Sds3-like family protein Dep1" ;
chromosome2 GeneDB mRNA 460856 463825 . + . mRNA SPBC428.10 ; db_xref "SPD:38/38B03" ; systematic_id "SPBC428.10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC428.10" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2303776 2305726 . + . mRNA SPBC12D12.01 ; systematic_id "SPBC12D12.01" ; colour "2" ; gene "sad1 ||| SPBC16H5.01c ||| SPBC12D12.01" ; note "YJL019W (Ned98) is reciprocal best hit (blast), ordered hsps, has conserved residues with other orthologs, both have 1 TMM, functionally similar" ; Alias "sad1" ; db_xref "SPD:33/33B06" ; synonym "SPBC16H5.01c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7744953; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005639; integral to nuclear membrane
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0090307; spindle assembly involved in mitosis
GO:0030474; spindle pole body duplication
GO:0034993; SUN-KASH complex
GO:0005515; protein binding" ; primary_name "sad1" ; product "spindle pole body protein Sad1" ;
chromosome2 GeneDB mRNA 1334112 1335520 . + . mRNA SPBC27B12.07 ; systematic_id "SPBC27B12.07" ; colour "10" ; gene "SPBC27B12.07" ; note "additional C terminal exon TR:D1022299" ; db_xref "SPD:32/32D05" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR283W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 1140148 1141206 . + . mRNA SPBC409.05 ; systematic_id "SPBC409.05" ; colour "2" ; gene "skp1 ||| psh1 ||| sph1 ||| SPBC409.05" ; Alias "skp1" ; db_xref "SPD:31/31G07" ; synonym "psh1 ||| sph1" ; GO "GO:0043291; RAVE complex
GO:0019005; SCF ubiquitin ligase complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0042787; protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle
GO:0042493; response to drug
GO:0007035; vacuolar acidification
GO:0070072; vacuolar proton-transporting two- sector ATPase complex assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YDR328C; date=19700101 ||| term=human SKP1A ortholog; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "skp1" ; product "SCF ubiquitin ligase complex subunit Skp1" ;
chromosome2 GeneDB mRNA 2596425 2600446 . - . mRNA SPBC25B2.02c ; systematic_id "SPBC25B2.02c" ; colour "2" ; gene "mam1 ||| SPBC2G5.09c ||| SPBC25B2.02c" ; note "SPCC663.03, pmd1 is more closely related to STE6" ; Alias "mam1" ; db_xref "SPD:34/34B02" ; synonym "SPBC2G5.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:9236781; date=20070216 ||| term=MDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YKL209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; GO "GO:0010008; endosome membrane
GO:0000139; Golgi membrane
GO:0005524; ATP binding
GO:0042626; ATPase activity, coupled to transmembrane movement of substances
GO:0000770; peptide pheromone export" ; primary_name "mam1" ; product "M-factor transporter Mam1" ;
chromosome2 GeneDB mRNA 1586653 1588413 . - . mRNA SPBC28F2.10c ; systematic_id "SPBC28F2.10c" ; colour "2" ; gene "SPBC28F2.10c ||| ngg1 ||| ada3" ; Alias "ngg1" ; obsolete_name "kap1" ; db_xref "SPD:34/34G03" ; synonym "ada3" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006366; transcription from RNA polymerase II promoter
GO:0044154; histone H3-K14 acetylation
GO:0043971; histone H3-K18 acetylation
GO:0043972; histone H3-K23 acetylation
GO:0043970; histone H3-K9 acetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR176W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19056896; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "ngg1" ; product "SAGA complex subunit Ngg1" ;
chromosome2 GeneDB mRNA 4523274 4524970 . - . mRNA SPBCPT2R1.07c ; systematic_id "SPBCPT2R1.07c" ; pseudo "_no_value" ; controlled_curation "term=warning, frameshifted; cv=warning; date=19700101" ; colour "13" ; gene "SPBCPT2R1.07c" ; product "pseudogene malic enzyme (predicted)" ;
chromosome2 GeneDB mRNA 170167 172271 . - . mRNA SPBC1683.13c ; systematic_id "SPBC1683.13c" ; colour "2" ; db_xref "SPD:27/27C10" ; Alias "cha4" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding
GO:0005515; protein binding
GO:0006808; regulation of nitrogen utilization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR337W and YLR098C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, growth defect, slow growth with ammonia nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=phenotype, growth defect, normal growth with proline nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504" ; primary_name "cha4" ; product "transcription factor Cha4 (predicted)" ;
chromosome2 GeneDB mRNA 1165405 1166507 . + . mRNA SPBC409.13 ; db_xref "SPD:09/09E04" ; systematic_id "SPBC409.13" ; colour "7" ; GO "GO:0000906; 6,7-dimethyl-8-ribityllumazine synthase activity
GO:0009231; riboflavin biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL143C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC409.13" ; product "6,7-dimethyl-8-ribityllumazine synthase (predicted)" ;
chromosome2 GeneDB mRNA 3755887 3756418 . + . mRNA SPBC31F10.02 ; db_xref "SPD:04/04E10" ; systematic_id "SPBC31F10.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human ACOT13 ortholog; date=19700101 ||| term=protein sequence feature, destruction box; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016291; acyl-CoA thioesterase activity
GO:0006631; fatty acid metabolic process
GO:0006637; acyl-CoA metabolic process" ; gene "SPBC31F10.02" ; product "acyl-CoA thioesterase (predicted)" ; EC_number "3.1.2.-" ;
chromosome2 GeneDB mRNA 1569746 1570072 . + . mRNA SPBC27.05 ; db_xref "SPD:01/01G08" ; systematic_id "SPBC27.05" ; controlled_curation "term=genome organization, co- expressed with adjacent gene; date=20100606" ; colour "6" ; gene "SPBC27.05" ; product "dubious" ;
chromosome2 GeneDB mRNA 1040988 1042032 . - . mRNA SPBC337.06c ; systematic_id "SPBC337.06c" ; colour "2" ; gene "Cwf15 ||| SPBC337.06c" ; Alias "cwf15" ; db_xref "SPD:11/11D01" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR163W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf15" ; product "complexed with Cdc5 protein Cwf15" ;
chromosome2 GeneDB mRNA 2105562 2106220 . + . mRNA SPBC23G7.05 ; systematic_id "SPBC23G7.05" ; colour "2" ; gene "sui1 ||| psu1 ||| SPBC23G7.05" ; Alias "sui1" ; db_xref "SPD:39/39H09" ; synonym "psu1" ; GO "GO:0006413; translational initiation
GO:0003743; translation initiation factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL244C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sui1" ; product "translation initiation factor eIF1" ;
chromosome2 GeneDB mRNA 1781945 1783260 . - . mRNA SPBC18H10.06c ; systematic_id "SPBC18H10.06c" ; colour "2" ; gene "swd2 ||| swd2.1 ||| SPBC18H10.06c" ; note "S. pombe paralogues are functionally diverged, S. cerevisiae YKL018W is a member of both CPF and SET1 complex (PMID 14617822)" ; Alias "swd2" ; db_xref "SPD:18/18G03" ; synonym "swd2.1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0016571; histone methylation
GO:0000790; nuclear chromatin
GO:0051568; histone H3-K4 methylation" ; primary_name "swd2" ; product "Set1C complex subunit Swd2.1" ;
chromosome2 GeneDB mRNA 259506 259998 . - . mRNA SPBC800.04c ; systematic_id "SPBC800.04c" ; colour "7" ; gene "rpl4301 ||| rpl43-1 ||| rpl43 ||| SPBC800.04c ||| rpl37a-1" ; Alias "rpl4301" ; db_xref "SPD:31/31D01" ; synonym "rpl43-1 ||| rpl43 ||| rpl37a-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR043W and YJR094W-A; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl4301" ; product "60S ribosomal protein L37a (predicted)" ;
chromosome2 GeneDB mRNA 1119485 1120308 . - . mRNA SPBC1709.10c ; systematic_id "SPBC1709.10c" ; colour "2" ; gene "SPBC1709.10c ||| atx1" ; Alias "atx1" ; db_xref "SPD:01/01H02" ; GO "; copper chaperone activity
GO:0005515; protein binding
GO:0006878; copper ion homeostasis
GO:0015680; intracellular copper ion transport
GO:0034759; regulation of transmembrane iron ion transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL259C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=19700101 ||| term=target is SPBC29A3.01; qualifier=predicted; date=19700101 ||| term=target is Cao1; db_xref=PMID:18723604; date=20080901" ; primary_name "atx1" ; product "copper chaperone Atx1" ;
chromosome2 GeneDB mRNA 4250030 4251433 . + . mRNA SPBC16G5.18 ; systematic_id "SPBC16G5.18" ; colour "7" ; gene "erg24 ||| SPBC16G5.18" ; Alias "erg24" ; db_xref "SPD:40/40D08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL280C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0050613; delta14-sterol reductase activity
GO:0006696; ergosterol biosynthesis" ; primary_name "erg24" ; product "C-14 sterol reductase Erg24 (predicted)" ; EC_number "1.3.1.70" ;
chromosome2 GeneDB mRNA 1762436 1763290 . + . mRNA SPBC11G11.04 ; systematic_id "SPBC11G11.04" ; colour "7" ; gene "trs20 ||| SPBC11G11.04" ; Alias "trs20" ; db_xref "SPD:06/06D05" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030008; TRAPP complex
GO:0006886; intracellular protein transport
GO:0005801; Golgi cis face
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR254C; date=19700101 ||| term=disease associated, X-linked spondyloepiphyseal dysplasia tarda; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trs20" ; product "TRAPP complex subunit Trs20 (predicted)" ;
chromosome2 GeneDB mRNA 2314283 2315986 . - . mRNA SPBC12D12.05c ; db_xref "SPD:23/23A01" ; systematic_id "SPBC12D12.05c" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0005215; transporter activity
GO:0005509; calcium ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=disease associated, Graves' disease; date=19700101 ||| term=orthologous to S. cerevisiae YNL083W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC12D12.05c" ; product "mitochondrial carrier, calcium binding subfamily (predicted)" ;
chromosome2 GeneDB mRNA 3691201 3691848 . - . mRNA SPBP8B7.28c ; systematic_id "SPBP8B7.28c" ; colour "2" ; gene "SPBP8B7.28c" ; db_xref "SPD:07/07D12" ; Alias "stc1" ; GO "GO:0043494; CLRC complex subunit
GO:0031618; nuclear centromeric heterochromatin
GO:0005515; protein binding
GO:0034629; cellular protein complex localization
GO:0030702; chromatin silencing at the centromere
GO:0031048; chromatin silencing by small RNA
GO:0000070; mitotic sister chromatid segregation
GO:0035389; establishment of chromatin silencing at the silent mating-type cassette
GO:0035390; establishment of chromatin silencing at the telomere
GO:0007126; meiosis
GO:0007126; meiosis
GO:0051570; regulation of H3 K9 methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, accumulation of non- coding outer repeat transcripts; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, siRNAs homologous to outer repeats undetectable; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, centromere function defective; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, chromosome segregation defects, lagging chromosomes; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, chromosome segregation defects, chromosome loss; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; cv=phenotype; db_xref=PMID:20211136; date=20100318 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100318 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100318 ||| term=species distribution, conserved in Fungi only; date=20100318 ||| term=name description, SiRNA To Chromatin; cv=name_description; db_xref=PMID:20211136; date=20100318" ; primary_name "stc1" ; product "LIM-like protein linking chromatin modification to RNAi, Stc1" ;
chromosome2 GeneDB mRNA 1558179 1558620 . - . mRNA SPBC29B5.03c ; systematic_id "SPBC29B5.03c" ; colour "7" ; gene "rpl26 ||| SPBC29B5.03c" ; Alias "rpl26" ; db_xref "SPD:31/31C12" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR344W and YGR034W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl26" ; product "60S ribosomal protein L26 (predicted)" ;
chromosome2 GeneDB mRNA 583608 585927 . - . mRNA SPBC354.14c ; systematic_id "SPBC354.14c" ; colour "7" ; db_xref "SPD:37/37D03" ; Alias "vac8" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=armadillo repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=modification, phosphorylated; qualifier=predicted; cv=pt_mod; date=19700101 ||| term=modification, palmitoylated; qualifier=predicted; cv=pt_mod; date=19700101 ||| term=orthologous to S. cerevisiae YEL013W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000324; vacuole (sensu Fungi)
GO:0000011; vacuole inheritance
GO:0042144; vacuole fusion, non-autophagic
GO:0043495; protein anchor
GO:0071255; CVT vesicle assembly
GO:0016236; macroautophagy" ; primary_name "vac8" ; product "vacuolar protein Vac8 (predicted)" ;
chromosome2 GeneDB mRNA 4377125 4379523 . - . mRNA SPBC1539.09c ; systematic_id "SPBC1539.09c" ; colour "7" ; gene "trp1 ||| SPBC1539.09c" ; db_xref "SPD:33/33G02" ; Alias "trp1" ; GO "GO:0004049; anthranilate synthase activity
GO:0004425; indole-3-glycerol-phosphate synthase activity
GO:0000162; tryptophan biosynthetic process
GO:0005950; anthranilate synthase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, multifunctional enzyme; cv=cat_act; date=19700101 ||| term=orthologous to S. cerevisiae YKL211C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "trp1" ; product "anthranilate synthase component II (predicted)" ; EC_number "4.1.3.27 ||| 4.1.1.48" ;
chromosome2 GeneDB mRNA 4020309 4020995 . + . mRNA SPBC3B9.17 ; systematic_id "SPBC3B9.17" ; colour "2" ; gene "isa2 ||| SPBC3B9.17" ; Alias "isa2" ; db_xref "SPD:08/08A01" ; GO "GO:0016226; iron-sulfur cluster assembly
GO:0005758; mitochondrial intermembrane space
GO:0006879; iron ion homeostasis
GO:0009102; biotin biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR067W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "isa2" ; product "iron-sulfur protein Isa2" ;
chromosome2 GeneDB mRNA 3393870 3396491 . - . mRNA SPBC3B8.02 ; systematic_id "SPBC3B8.02" ; colour "2" ; gene "php5 ||| SPBC3B8.02" ; Alias "php5" ; db_xref "SPD:40/40D11" ; GO "GO:0016602; CCAAT-binding factor complex
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0045941; positive regulation of transcription
GO:0006109; regulation of carbohydrate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR358W; date=19700101 ||| term=histone fold; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=DNA binding specificity, complex binds 5'-CCAAT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates pcl1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates sdh41; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates isa1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates fbp1; db_xref=PMID:11238405; date=20100302 ||| term=gene expression, transcriptionally regulates cyc1; db_xref=PMID:9372932; date=20100302" ; primary_name "php5" ; product "CCAAT-binding factor complex subunit Php5" ;
chromosome2 GeneDB mRNA 4113007 4120702 . - . mRNA SPBC56F2.04 ; systematic_id "SPBC56F2.04" ; colour "7" ; gene "SPBC56F2.04 ||| utp20" ; Alias "utp20" ; db_xref "SPD:34/34D01" ; GO "GO:0030515; snoRNA binding
GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL004W; date=19700101 ||| term=HEAT repeat; date=20070801 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "utp20" ; product "U3 snoRNP protein Utp20 (predicted)" ;
chromosome2 GeneDB mRNA 2567701 2568270 . + . mRNA SPBC29A10.13 ; systematic_id "SPBC29A10.13" ; colour "7" ; gene "atp7 ||| SPBC29A10.13" ; Alias "atp7" ; db_xref "SPD:51/51B05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL016C; date=19700101 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20080108 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0016021; integral to membrane
GO:0000274; proton-transporting ATP synthase, stator stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0005198; structural molecule activity
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0043623; cellular protein complex assembly" ; primary_name "atp7" ; product "F0-ATPase subunit D (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB mRNA 3191310 3193102 . + . mRNA SPBC776.09 ; systematic_id "SPBC776.09" ; colour "2" ; gene "ste13 ||| SPBC776.09" ; Alias "ste13" ; db_xref "SPD:33/33B08" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005737; cytoplasm
GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0000290; deadenylation-dependent decapping
GO:0000932; cytoplasmic mRNA processing body" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDL160C; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human DDX6 ortholog; date=20100217 ||| term=phenotype, sterile; db_xref=PMID:8575018; date=20101013 ||| term=name description, STErile; db_xref=PMID:8575018; date=20101013" ; primary_name "ste13" ; product "ATP-dependent RNA helicase Ste13" ;
chromosome2 GeneDB mRNA 1699988 1700706 . + . mRNA SPBC19C2.12 ; systematic_id "SPBC19C2.12" ; colour "7" ; gene "SPBC19C2.12 ||| mrpl51" ; Alias "mrpl51" ; db_xref "SPD:42/42E04" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl51" ; product "mitochondrial ribosomal protein subunit L51 (predicted)" ;
chromosome2 GeneDB mRNA 1047487 1048402 . + . mRNA SPBC337.09 ; systematic_id "SPBC337.09" ; colour "7" ; gene "erg28 ||| SPBC337.09" ; Alias "erg28" ; db_xref "SPD:06/06D04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006696; ergosterol biosynthesis
GO:0005789; endoplasmic reticulum membrane" ; primary_name "erg28" ; product "Erg28 protein (predicted)" ; reserved_name "erg28" ;
chromosome2 GeneDB mRNA 1167534 1168434 . + . mRNA SPBC409.15 ; systematic_id "SPBC409.15" ; colour "7" ; gene "SPBC409.15" ; note "highly acidic C terminus" ; db_xref "SPD:10/10B05" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR435W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "rRNA processing protein Tsr2 (predicted)" ;
chromosome2 GeneDB mRNA 3267015 3268221 . + . mRNA SPBC25H2.10c ; systematic_id "SPBC25H2.10c" ; colour "7" ; gene "SPBC25H2.10c" ; note "new gene prediction (changed N terminal exon to give different donor, and canged acceptor for 2nd exon) removed stop codon from translation, status changed from pseudo to coding (V.W 15.03.2004)" ; db_xref "SPD:52/52C10" ; GO "GO:0006400; tRNA modification
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0051392; tRNA N-acetyltransferase activity
GO:0051391; tRNA acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL232W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "tRNA acetyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 1430567 1432890 . - . mRNA SPBC691.05c ; systematic_id "SPBC691.05c" ; colour "7" ; gene "SPBC691.05c ||| SPBP22H7.01c" ; obsolete_name "pi030 ||| SPACTOKYO_453.04" ; db_xref "SPD:49/49D06" ; synonym "SPBP22H7.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 3025659 3026075 . - . mRNA SPBC15D4.08c ; db_xref "SPD:03/03C10" ; systematic_id "SPBC15D4.08c" ; colour "6" ; gene "SPBC15D4.08c" ; product "dubious" ;
chromosome2 GeneDB mRNA 1108700 1110462 . + . mRNA SPBC1709.06 ; systematic_id "SPBC1709.06" ; colour "7" ; gene "dus2 ||| SPBC1709.06" ; Alias "dus2" ; db_xref "SPD:45/45F04" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0017150; tRNA dihydrouridine synthase activity
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=19700101 ||| term=orthologous to S. cerevisiae YNR015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dus2" ; product "tRNA dihydrouridine synthase Dus2 (predicted)" ;
chromosome2 GeneDB mRNA 1387558 1389152 . - . mRNA SPBC8D2.16c ; db_xref "SPD:32/32C06" ; systematic_id "SPBC8D2.16c" ; colour "10" ; GO "GO:0005634; nucleus
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR310C and YGR283C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c9orf114 ortholog; date=20100727" ; gene "SPBC8D2.16c" ; product "DUF171 family protein" ;
chromosome2 GeneDB mRNA 55751 56785 . - . mRNA SPBPB8B6.06c ; db_xref "SPD:51/51C06" ; obsolete_name "SPAP8B6.06c" ; systematic_id "SPBPB8B6.06c" ; controlled_curation "term=orthologous to S. cerevisiae YOR390W and YPL279C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBPB8B6.06c" ; product "CRCB domain protein" ;
chromosome2 GeneDB mRNA 1028878 1031975 . - . mRNA SPBC146.14c ; systematic_id "SPBC146.14c" ; colour "7" ; gene "sec26 ||| SPBC146.14c ||| SPBC337.01c" ; Alias "sec26" ; db_xref "SPD:29/29E06" ; synonym "SPBC337.01c" ; GO "GO:0030126; COPI vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR238C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=adaptin family; date=20100902" ; primary_name "sec26" ; product "coatomer beta subunit (predicted)" ;
chromosome2 GeneDB mRNA 1709214 1712088 . - . mRNA SPBC2F12.13 ; systematic_id "SPBC2F12.13" ; colour "2" ; gene "klp5 ||| sot1 ||| SPBC2F12.13" ; Alias "klp5" ; db_xref "SPD:39/39A05" ; synonym "sot1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kinesin Kip3 subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=pathway, Ras1-Scd; cv=pathway; db_xref=PMID:11739790; date=19700101 ||| term=orthologous to S. cerevisiae YGL216W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=kinesin-8 family; date=20090316 ||| term=protein sequence feature, NLS; cv=sequence_feature; db_xref=PMID:18799626; date=20090316 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:18799626; cv=localization; date=20090316 ||| term=localization, klp5 and klp6 are interdependent for mitotic nuclear localization; cv=localization; db_xref=PMID:18799626; date=20090316 ||| term=localization, klp5 and klp6 enter the nucleus separately; db_xref=PMID:18799626; cv=localization; date=20090316 ||| term=phenotype, chromosome segregation defects, chromosome congression; qualifier=deletion; cv=phenotype; db_xref=PMID:18799626; date=20090316 ||| term=phenotype, cytoskeletal defects, long cytoplasmic microtubules; qualifier=deletion; cv=phenotype; db_xref=PMID:18799626; date=20090316 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201 ||| term=phenotype, resistance to TBZ; db_xref=PMID:11739790; cv=phenotype; date=20100216 ||| term=phenotype, resistance to microtubule depolymerizing drugs; db_xref=PMID:11739790; cv=phenotype; date=20100216" ; GO "GO:0003777; microtubule motor activity
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0005816; spindle pole body
GO:0015630; microtubule cytoskeleton
GO:0000070; mitotic sister chromatid segregation
GO:0000915; cytokinesis, contractile ring formation
; regulation of microtubule depolymerization
GO:0031114; regulation of microtubule polymerization
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0007126; meiosis
GO:0000778; kinetochore
GO:0051233; spindle midzone
GO:0005873; plus-end kinesin complex
GO:0070507; regulation of microtubule cytoskeleton organization
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0034504; cellular protein localization to nucleus
GO:0008574; plus-end-directed microtubule motor activity" ; primary_name "klp5" ; product "kinesin-like protein Klp5" ;
chromosome2 GeneDB mRNA 122605 127226 . + . mRNA SPBC359.05 ; systematic_id "SPBC359.05" ; colour "2" ; gene "abc3 ||| SPBC359.05" ; Alias "abc3" ; db_xref "SPD:39/39E06" ; GO "GO:0005215; transporter activity
GO:0055085; transmembrane transport
GO:0000329; vacuolar membrane
GO:0042626; ATPase activity, coupled to transmembrane movement of substances" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=MDR subfamily; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YLL048C and YDR135C and YLL015W and YHL035C and YGR281W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "abc3" ; product "ABC transporter Abc3, unknown specificity" ;
chromosome2 GeneDB mRNA 1514006 1516144 . - . mRNA SPBC83.03c ; systematic_id "SPBC83.03c" ; colour "2" ; gene "SPBC83.03c ||| tas3" ; db_xref "SPD:34/34F08" ; Alias "tas3" ; GO "GO:0030958; RITS complex
GO:0005721; centric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0000790; nuclear chromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0045132; meiotic chromosome segregation
GO:0090052; regulation of chromatin silencing at centromere
GO:0031060; regulation of histone methylation
GO:0031048; small RNA-mediated chromatin silencing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=name description, TArgeting complex Subunit; cv=name_description; date=20060220 ||| term=species distribution, conserved in Eukaryotes only; date=20090429 ||| term=species distribution, conserved in Fungi; date=20090429 ||| term=species distribution, conserved in Metazoa; date=20090429 ||| term=species distribution, conserved in Vertebrates; date=20090429 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090429 ||| term=phenotype, siRNAs homologous to outer repeats undetectable; cv=phenotype; date=20100318" ; primary_name "tas3" ; product "RITS complex subunit 3" ;
chromosome2 GeneDB mRNA 820832 823141 . - . mRNA SPBC530.12c ; systematic_id "SPBC530.12c" ; colour "2" ; gene "pdf1 ||| SPBC530.12c" ; Alias "pdf1" ; obsolete_name "yhc1" ; db_xref "SPD:36/36F01" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0047874; dolichyldiphosphatase activity
GO:0008474; palmitoyl-(protein) hydrolase activity
GO:0006885; regulation of pH
GO:0030148; sphingolipid biosynthesis
GO:0007035; vacuolar acidification
GO:0002084; protein depalmitoylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Batten's disease; qualifier=N_term; date=20060825 ||| term=modification, proteolytic cleavage; db_xref=PMID:15075260; cv=pt_mod; residue=ARG354; date=20060825 ||| term=genome organization, tandem fusion protein; db_xref=PMID:15075260; cv=genome_org; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; evidence=ISS; cv=genome_org; date=20060825 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15075260; date=20060825 ||| term=orthologous to S. cerevisiae YGR036C (C-term); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091123 ||| term=human PPT1 ortholog (N term); date=20101012 ||| term=complementation, functionally complemented by human PPT1; db_xref=PMID:15075260; date=20101012" ; primary_name "pdf1" ; product "palmitoyl protein thioesterase-dolichol pyrophosphate phosphatase fusion 1" ; EC_number "3.1.2.22 ||| 3.6.1.-" ;
chromosome2 GeneDB mRNA 1050239 1051446 . + . mRNA SPBC337.11 ; db_xref "SPD:14/14A08" ; systematic_id "SPBC337.11" ; colour "7" ; GO "GO:0008233; peptidase activity
GO:0005743; mitochondrial inner membrane
GO:0005737; cytoplasm
GO:0004024; alcohol dehydrogenase activity, zinc- dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC337.11" ; product "mitochondrial peptidase (predicted)" ;
chromosome2 GeneDB mRNA 2242457 2244722 . - . mRNA SPBC15C4.04c ; db_xref "SPD:26/26A08" ; systematic_id "SPBC15C4.04c" ; colour "7" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPBC15C4.04c" ; product "amino acid permease (predicted)" ;
chromosome2 GeneDB mRNA 467841 468829 . - . mRNA SPBC428.12c ; db_xref "SPD:08/08B06" ; systematic_id "SPBC428.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; colour "10" ; gene "SPBC428.12c" ; product "RNA-binding protein" ;
chromosome2 GeneDB mRNA 3268462 3269410 . - . mRNA SPBC25H2.09 ; db_xref "SPD:04/04F05" ; systematic_id "SPBC25H2.09" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR011C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC25H2.09" ; product "DUF1690 family protein" ;
chromosome2 GeneDB mRNA 2457344 2458879 . + . mRNA SPBC12C2.09c ; db_xref "SPD:14/14A02" ; systematic_id "SPBC12C2.09c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005783; endoplasmic reticulum
GO:0016020; membrane
GO:0046872; metal ion binding
GO:0006882; cellular zinc ion homeostasis
GO:0006629; lipid metabolism
GO:0071294; cellular response to zinc ion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL002C and YDR492W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC12C2.09c" ; product "Haemolysin-III family protein (predicted)" ;
chromosome2 GeneDB mRNA 2023331 2025091 . + . mRNA SPBP23A10.12 ; systematic_id "SPBP23A10.12" ; colour "7" ; gene "SPBP23A10.12" ; Alias "frg1" ; db_xref "SPD:13/13B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human FRG1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, muscular dystrophy; date=20091018" ; GO "GO:0006397; mRNA processing" ; primary_name "frg1" ; product "FRG1 family protein, involved in mRNA processing (predicted)" ;
chromosome2 GeneDB mRNA 3660078 3662441 . - . mRNA SPBP8B7.15c ; db_xref "SPD:23/23D03" ; systematic_id "SPBP8B7.15c" ; colour "7" ; GO "GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation
GO:0005847; mRNA cleavage and polyadenylation specificity factor complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20060504 ||| term=ubiquitin-protein ligase E3; date=20060504 ||| term=zf-CCHC type (zinc knuckle); date=20060518 ||| term=zinc finger protein; date=20060518 ||| term=orthologous to S. cerevisiae YKL059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBP8B7.15c" ; product "ubiquitin-protein ligase E3 RBBP6 family involved in mRNA cleavage (predicted)" ;
chromosome2 GeneDB mRNA 3214247 3215895 . + . mRNA SPBC21.01 ; systematic_id "SPBC21.01" ; colour "2" ; gene "mis17 ||| SPBC776.19 ||| SPBC21.01" ; Alias "mis17" ; db_xref "SPD:50/50F10" ; synonym "SPBC776.19" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0000778; condensed chromosome kinetochore
GO:0031055; chromatin remodeling at centromere
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0031511; Mis6-Sim4 complex
GO:0051382; kinetochore assembly
GO:0005634; nucleus
GO:0034080; DNA replication-independent nucleosome assembly at centromere" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=region; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis17" ; product "kinetochore protein Mis17" ;
chromosome2 GeneDB mRNA 2180906 2181455 . + . mRNA SPBC17G9.07 ; systematic_id "SPBC17G9.07" ; colour "7" ; gene "rps2402 ||| rps24-2 ||| SPBC17G9.07" ; Alias "rps2402" ; db_xref "SPD:39/39H04" ; synonym "rps24-2" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER074W and YIL069C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps2402" ; product "40S ribosomal protein S24 (predicted)" ;
chromosome2 GeneDB mRNA 4303136 4305394 . - . mRNA SPBC543.03c ; systematic_id "SPBC543.03c" ; colour "2" ; gene "pku80 ||| SPBC543.03c" ; Alias "pku80" ; db_xref "SPD:39/39F09" ; GO "GO:0006303; double-strand break repair via nonhomologous end joining
GO:0000723; telomere maintenance
GO:0000084; S phase of mitotic cell cycle
GO:0000781; chromosome, telomeric region
GO:0042162; telomeric DNA binding
GO:0000723; telomere maintenance
GO:0046982; protein heterodimerization activity
GO:0004003; ATP-dependent DNA helicase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YMR106C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pku80" ; product "Ku domain protein Pku80" ;
chromosome2 GeneDB mRNA 1414496 1415990 . + . mRNA SPBC17A3.07 ; systematic_id "SPBC17A3.07" ; colour "2" ; gene "pgr1 ||| SPBC17A3.07" ; Alias "pgr1" ; obsolete_name "pi039" ; db_xref "SPD:33/33A07" ; GO "GO:0004362; glutathione-disulfide reductase activity
GO:0006749; glutathione metabolism
GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9287302; date=19700101 ||| term=orthologous to S. cerevisiae YPL091W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pgr1" ; product "mitochondrial glutathione reductase Pgr1" ;
chromosome2 GeneDB mRNA 4256060 4259360 . + . mRNA SPBC1652.02 ; obsolete_name "aap1" ; db_xref "SPD:40/40F11" ; systematic_id "SPBC1652.02" ; synonym "SPBC16A3.20c" ; colour "7" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=warning, gene name conflict; cv=warning; date=20100126" ; product "APC amino acid transporter (predicted)" ;
chromosome2 GeneDB mRNA 336557 338317 . - . mRNA SPBC1271.14 ; db_xref "KEGG:00220; ||| SPD:20/20F12" ; systematic_id "SPBC1271.14" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YMR062C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0005759; mitochondrial matrix
GO:0004042; amino-acid N-acetyltransferase activity
GO:0004358; glutamate N-acetyltransferase activity
GO:0006526; arginine biosynthesis
GO:0006592; ornithine biosynthesis" ; gene "SPBC1271.14" ; product "glutamate N-acetyltransferase (predicted)" ; EC_number "2.3.1.35 ||| 2.3.1.1" ;
chromosome2 GeneDB mRNA 771318 772760 . + . mRNA SPBC577.11 ; db_xref "SPD:15/15E11" ; systematic_id "SPBC577.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi only; date=20091022 ||| term=species distribution, conserved in Fungi; date=20091022 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091022" ; colour "10" ; gene "SPBC577.11" ; product "DUF3074 family protein" ;
chromosome2 GeneDB mRNA 804330 805653 . - . mRNA SPBC530.07c ; db_xref "SPD:08/08F11" ; systematic_id "SPBC530.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=TENA/THI domain; date=20070913" ; colour "10" ; gene "SPBC530.07c" ; product "TENA/THI family protein" ;
chromosome2 GeneDB mRNA 4021202 4021870 . - . mRNA SPBC3B9.18c ; systematic_id "SPBC3B9.18c" ; colour "7" ; gene "vma7 ||| SPBC3B9.18c" ; Alias "vma7" ; db_xref "SPD:03/03D07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000221; proton-translocating V-type ATPase, V1 domain
GO:0000329; fungal-type vacuole membrane
GO:0005524; ATP binding
GO:0046961; proton-transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; primary_name "vma7" ; product "V-type ATPase V1 subunit F (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB mRNA 4503653 4505257 . - . mRNA SPBPB2B2.19c ; systematic_id "SPBPB2B2.19c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAC977.01 and SPAC750.05c and SPBC1348.02; date=19700101" ; colour "12" ; gene "SPBPB2B2.19c" ; product "S. pombe specific 5Tm protein family" ;
chromosome2 GeneDB mRNA 58324 59646 . - . mRNA SPBPB21E7.01c ; systematic_id "SPBPB21E7.01c" ; colour "7" ; obsolete_name "SPAP8B6.07c ||| SPAPB21E7.01c" ; Alias "eno102" ; synonym "eno1 ||| SPBPB8B6.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, duplicated in S. pombe; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YGR254W and YHR174W and YOR393W and YPL281C and YMR323W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006096; glycolysis
GO:0004634; phosphopyruvate hydratase activity" ; primary_name "eno102" ; product "enolase (predicted)" ;
chromosome2 GeneDB mRNA 1889972 1891753 . - . mRNA SPBC3H7.01 ; systematic_id "SPBC3H7.01" ; colour "2" ; gene "spo14 ||| stl1 ||| SPBC3H7.01 ||| SPBP16F5.01c" ; Alias "spo14" ; db_xref "SPD:33/33A12" ; synonym "stl1 ||| SPBP16F5.01c" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005085; guanyl-nucleotide exchange factor activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0031321; prospore formation
GO:0031322; prospore-specific spindle pole body modification
GO:0032120; ascospore-type prospore membrane formation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:3442824; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNR026C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "spo14" ; product "GDP/GTP exchange factor, WD repeat protein Spo14" ;
chromosome2 GeneDB mRNA 2932983 2934193 . + . mRNA SPBC1703.10 ; systematic_id "SPBC1703.10" ; colour "2" ; gene "ypt1 ||| SPBC1703.10" ; Alias "ypt1" ; db_xref "SPD:40/40C07" ; GO "GO:0005525; GTP binding
GO:0007264; small GTPase mediated signal transduction
GO:0000139; Golgi membrane
GO:0005789; endoplasmic reticulum membrane
GO:0003924; GTPase activity
GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Ypt subfamily; db_xref=PMID:2740223; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:2328721; date=19700101 ||| term=orthologous to S. cerevisiae YFL038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ypt1" ; product "GTPase Ypt1" ;
chromosome2 GeneDB mRNA 2223641 2224720 . + . mRNA SPBC14C8.12 ; systematic_id "SPBC14C8.12" ; colour "2" ; gene "rpb8 ||| SPBC14C8.12" ; Alias "rpb8" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:31/31E02" ; GO "GO:0006360; transcription from RNA polymerase I promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0006383; transcription from RNA polymerase III promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0005736; DNA-directed RNA polymerase I complex
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0005666; DNA-directed RNA polymerase III complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR224C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpb8" ; product "DNA-directed RNA polymerase I, II and III subunit Rpb8" ;
chromosome2 GeneDB mRNA 721007 722432 . - . mRNA SPBC119.05c ; systematic_id "SPBC119.05c" ; colour "7" ; gene "SPBC119.05c" ; obsolete_name "csh3" ; db_xref "SPD:32/32A09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR136W and YPR154W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030036; actin cytoskeleton organization and biogenesis" ; product "Wiskott-Aldrich syndrome homolog binding protein Lsb1 (predicted)" ;
chromosome2 GeneDB mRNA 2333155 2334915 . - . mRNA SPBC24C6.08c ; db_xref "SPD:17/17D02" ; systematic_id "SPBC24C6.08c" ; colour "7" ; GO "GO:0030120; vesicle coat
GO:0006893; Golgi to plasma membrane transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR057C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human BDH ortholog; date=20100217" ; gene "SPBC24C6.08c" ; product "vesicle coat protein, folliculin (predicted)" ;
chromosome2 GeneDB mRNA 4497937 4499394 . - . mRNA SPBPB2B2.16c ; systematic_id "SPBPB2B2.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=similar to S. pombe SPBC1348.05 and SPAPB1A11.01 and SPAC750.02c and SPCC1529.01; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=19700101" ; colour "7" ; GO "GO:0006810; transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; gene "SPBPB2B2.16c" ; product "MFS family membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 3825300 3826287 . - . mRNA SPBC21C3.17c ; db_xref "SPD:42/42D10" ; systematic_id "SPBC21C3.17c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL077W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC21C3.17c" ; product "conserved fungal protein" ; note "homology to YKL077W is low but has conserved residues by multiple alignment, conserved N-terminal signal peptide and C-terminal transmenbrane helix" ;
chromosome2 GeneDB mRNA 3289466 3290698 . - . mRNA SPBC20F10.04c ; systematic_id "SPBC20F10.04c" ; colour "2" ; gene "nse4 ||| rad62 ||| SPBC20F10.04c" ; Alias "nse4" ; db_xref "SPD:41/41B09" ; synonym "rad62" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15331764; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:15331764; date=20100708 ||| term=phenotype, chromosome segregation defects; date=20100708 ||| term=phenotype, sensitive to DNA damage; date=20100708 ||| term=orthologous to S. cerevisiae YDL105W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20100126" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0006302; double-strand break repair
GO:0006302; double-strand break repair
GO:0048478; replication fork protection" ; primary_name "nse4" ; product "Smc5-6 complex non-SMC subunit Nse4" ;
chromosome2 GeneDB mRNA 954866 956682 . - . mRNA SPBC646.15c ; db_xref "SPD:21/21B03" ; systematic_id "SPBC646.15c" ; colour "7" ; GO "GO:0045046; protein import into peroxisome membrane
GO:0005778; peroxisomal membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC646.15c" ; product "Pex16 family peroxisome import protein (predicted)" ;
chromosome2 GeneDB mRNA 2464321 2465980 . - . mRNA SPBC12C2.06 ; db_xref "SPD:24/24E05" ; systematic_id "SPBC12C2.06" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006406; mRNA export from nucleus
GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding
GO:0006415; translational termination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YOR046C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC12C2.06" ; product "cytoplasmic ATP-dependent RNA helicase Dbp5 (predicted)" ;
chromosome2 GeneDB mRNA 1543492 1544766 . - . mRNA SPBC83.18c ; systematic_id "SPBC83.18c" ; colour "2" ; gene "SPBC83.18c" ; Alias "fic1" ; db_xref "SPD:11/11G07" ; GO "GO:0005737; cytoplasm
GO:0005543; phospholipid binding
GO:0031566; contractile ring maintenance involved in cytokinesis
GO:0005826; contractile ring
GO:0051286; cell tip
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033205; cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YNL152W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=phenotype, viable; cv=phenotype; qualifier=deletion; db_xref=PMID:19139265; date=20090206 ||| term=modification, phosphorylated; db_xref=PMID:19139265; cv=pt_mod; date=20090206 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "fic1" ; product "C2 domain protein Fic1" ;
chromosome2 GeneDB mRNA 1378393 1378770 . + . mRNA SPBC8D2.23 ; Alias "new15" ; systematic_id "SPBC8D2.23" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0032543; mitochondrion translation
GO:0005671; mitochondrial ribosome" ; controlled_curation "term=orthologous to S. cerevisiae YNL122C; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "new15" ; gene "SPBC8D2.23" ; product "mitochondrial protein, ribosomal subunit L35 related" ;
chromosome2 GeneDB mRNA 3089021 3089634 . + . mRNA SPBC30D10.21 ; Alias "new18" ; systematic_id "SPBC30D10.21" ; GO "GO:0005739; mitochondrion" ; colour "10" ; controlled_curation "term=orthologous to S. cerevisiae YDR493W; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=conserved in Eukaryotes; date=20090721 ||| term=conserved in Metazoa; date=20090721 ||| term=conserved in Vertebrates; date=20090721 ||| term=conserved in Eukaryotes only; date=20090721 ||| term=predominantly uniform single copy (one to one); date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "new18" ; gene "SPBC30D10.21" ; product "mitochondrial protein" ;
chromosome2 GeneDB mRNA 2070199 2072283 . + . mRNA SPBC29A3.17 ; systematic_id "SPBC29A3.17" ; colour "2" ; gene "gef3 ||| SPBC29A3.17" ; Alias "gef3" ; db_xref "SPD:26/26B01" ; GO "GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0032319; regulation of Rho GTPase activity
GO:0035023; regulation of Rho protein signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14637153; date=19700101 ||| term=human DNMBP ortholog; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gef3" ; product "RhoGEF Gef3" ;
chromosome2 GeneDB mRNA 2452052 2457063 . + . mRNA SPBC12C2.10c ; systematic_id "SPBC12C2.10c" ; colour "2" ; gene "pst1 ||| SPBC21D10.01c ||| SPBC12C2.10c" ; Alias "pst1" ; db_xref "SPD:48/48G08" ; synonym "SPBC21D10.01c" ; GO "GO:0032221; Clr6 histone deacetylase complex
GO:0005721; centric heterochromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0003714; transcription corepressor activity
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0030261; chromosome condensation
GO:0016575; histone deacetylation
GO:0033698; Clr6 histone deacetylase complex I/I'" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SIN3 family co-repressor; db_xref=PMID:10022921; date=19700101 ||| term=orthologous to S. cerevisiae YOL004W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10022921; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pst1" ; product "Clr6 histone deacetylase complex subunit Pst1" ;
chromosome2 GeneDB mRNA 4288945 4290762 . + . mRNA SPBC16A3.05c ; systematic_id "SPBC16A3.05c" ; colour "2" ; gene "rae1 ||| SPBC16A3.05c" ; Alias "rae1" ; db_xref "SPD:33/33B04" ; synonym "cut21" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YER107C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7706287; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016973; poly(A)+ mRNA export from nucleus
; nuclear pore
GO:0006606; protein import into nucleus
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0007094; mitotic spindle checkpoint
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000054; ribosome export from nucleus
GO:0055126; Nup82 complex" ; primary_name "rae1" ; product "RNA export factor, nucleoporin Rae1" ;
chromosome2 GeneDB mRNA 2955966 2957189 . - . mRNA SPBC2A9.05c ; systematic_id "SPBC2A9.05c" ; colour "7" ; gene "SPBC2A9.05c" ; db_xref "SPD:08/08E09" ; Alias "tvp23" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR084C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016192; vesicle-mediated transport" ; primary_name "tvp23" ; product "Golgi transport protein Tvp23 (predicted)" ;
chromosome2 GeneDB mRNA 3418888 3421103 . + . mRNA SPBC4B4.04 ; db_xref "SPD:36/36B10" ; systematic_id "SPBC4B4.04" ; colour "7" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006413; translational initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR054W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC4B4.04" ; product "translation initiation factor eIF2A (predicted)" ;
chromosome2 GeneDB mRNA 72081 73390 . + . mRNA SPBPB21E7.08 ; systematic_id "SPBPB21E7.08" ; colour "13" ; gene "SPBPB21E7.08" ; note "2 frameshifts" ; synonym "SPAPB21E7.08" ; pseudo "_no_value" ; controlled_curation "term=orthologous to S. cerevisiae YJL213W; date=19700101" ; product "pseudogene" ;
chromosome2 GeneDB mRNA 901680 902836 . + . mRNA SPBC216.03 ; db_xref "SPD:43/43A11" ; systematic_id "SPBC216.03" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR090W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC216.03" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 1822915 1823957 . + . mRNA SPBC9B6.06 ; systematic_id "SPBC9B6.06" ; colour "7" ; gene "SPBC9B6.06 ||| mrpl10" ; Alias "mrpl10" ; db_xref "SPD:42/42G10" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL284C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl10" ; product "mitochondrial ribosomal protein subunit L15 (predicted)" ;
chromosome2 GeneDB mRNA 3753907 3755560 . + . mRNA SPBC13G1.13 ; systematic_id "SPBC13G1.13" ; colour "2" ; gene "tfb2 ||| SPBC13G1.13 ||| SPBC31F10.01" ; Alias "tfb2" ; db_xref "SPD:44/44D10" ; synonym "SPBC31F10.01" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0000112; nucleotide-excision repair factor 3 complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000717; nucleotide-excision repair, DNA duplex unwinding
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL122C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tfb2" ; product "transcription factor TFIIH complex subunit Tfb2" ;
chromosome2 GeneDB mRNA 2678822 2680283 . + . mRNA SPBC3E7.10 ; systematic_id "SPBC3E7.10" ; colour "7" ; gene "fma1 ||| SPBC3E7.10" ; Alias "fma1" ; db_xref "SPD:22/22E12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human MetAP-1 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YLR244C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0004177; aminopeptidase activity
GO:0035551; proteolysis
GO:0035551; protein initiator methionine removal involved in protein maturation" ; primary_name "fma1" ; product "methionine aminopeptidase Fma1 (predicted)" ; EC_number "3.4.11.18" ; reserved_name "fma1" ;
chromosome2 GeneDB mRNA 4151501 4153208 . + . mRNA SPBC14F5.02 ; db_xref "SPD:26/26B03" ; systematic_id "SPBC14F5.02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC14F5.02" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1988570 1990352 . - . mRNA SPBC1A4.07c ; db_xref "SPD:21/21B08" ; systematic_id "SPBC1A4.07c" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0030515; snoRNA binding
GO:0030532; small nuclear ribonucleoprotein complex
GO:0005732; small nucleolar ribonucleoprotein complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1A4.07c" ; product "U3 snoRNP-associated protein Sof1 (predicted)" ;
chromosome2 GeneDB mRNA 2807615 2808999 . + . mRNA SPBC32F12.11 ; systematic_id "SPBC32F12.11" ; colour "2" ; db_xref "SPD:40/40C04" ; Alias "tdh1" ; synonym "gpd1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth defect, slow growth; cv=phenotype; db_xref=PMID:18406331; date=20090205 ||| term=orthologous to S. cerevisiae YJL052W and YGR192C and YJR009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, S-thiolated; cv=pt_mod; residue=Cyc_152; db_xref=PMID:18406331; date=20090205 ||| term=warning, gene name conflict; date=20091006" ; GO "GO:0006096; glycolysis
GO:0006094; gluconeogenesis
GO:0009277; cell wall (sensu Fungi)
GO:0005829; cytosol
GO:0004365; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0070301; cellular response to hydrogen peroxide
GO:0031098; stress-activated protein kinase signaling pathway
GO:0070302; regulation of stress-activated protein kinase signaling pathway
GO:0070297; regulation of two-component signal transduction
GO:0005515; protein binding" ; primary_name "tdh1" ; product "glyceraldehyde-3-phosphate dehydrogenase Tdh1" ; EC_number "1.2.1.12" ;
chromosome2 GeneDB mRNA 904269 912849 . + . mRNA SPBC216.05 ; systematic_id "SPBC216.05" ; colour "2" ; gene "rad3 ||| SPBC216.05" ; Alias "rad3" ; db_xref "SPD:41/41B03" ; GO "GO:0007131; meiotic recombination
GO:0000228; nuclear chromosome
GO:0004674; protein serine/threonine kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031573; intra-S DNA damage checkpoint
GO:0031573; intra-S DNA damage checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=phenotype, DNA damage checkpoint defects, S-phase; cv=phenotype; qualifier=deletion; db_xref=PMID:19037101; date=20090206 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YBR136W; date=19700101 ||| term=phosphoinositide 3-kinase family protein; date=20071228 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:14668484; date=20090110 ||| term=target is Chk1; db_xref=PMID:10512862; date=20100820 ||| term=target is Mrc1; db_xref=PMID:15173168; date=20100826" ; primary_name "rad3" ; product "ATR checkpoint kinase Rad3" ;
chromosome2 GeneDB mRNA 2320336 2322428 . + . mRNA SPBC24C6.02 ; db_xref "SPD:46/46B11" ; systematic_id "SPBC24C6.02" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus
GO:0004004; ATP-dependent RNA helicase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YFL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC24C6.02" ; product "ATP-dependent RNA helicase Spb4 (predicted)" ;
chromosome2 GeneDB mRNA 911603 914774 . - . mRNA SPBC216.06c ; systematic_id "SPBC216.06c" ; colour "2" ; gene "swi1 ||| SPBC216.06c" ; db_xref "SPD:47/47F08" ; Alias "swi1" ; GO "GO:0005634; nucleus
GO:0031298; replication fork protection complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007531; mating type determination
GO:0043111; replication fork arrest
GO:0048478; replication fork protection
GO:0045950; negative regulation of mitotic recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA recombination defect, at mitotic DNA replication fork barriers, elevated; qualifier=deletion; cv=phenotype; db_xref=PMID:19273851; date=20090423 ||| term=orthologous to S. cerevisiae YNL273W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TIMELESS ortholog; date=20090423 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "swi1" ; product "replication fork protection complex subunit Swi1" ;
chromosome2 GeneDB mRNA 2698184 2700381 . - . mRNA SPBC4F6.07c ; db_xref "SPD:27/27G01" ; systematic_id "SPBC4F6.07c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0004004; ATP-dependent RNA helicase activity
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YBR142W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC4F6.07c" ; product "ATP-dependent RNA helicase Mak5 (predicted)" ;
chromosome2 GeneDB mRNA 2332270 2332992 . + . mRNA SPBC24C6.07 ; systematic_id "SPBC24C6.07" ; colour "2" ; gene "cdc14 ||| SPBC24C6.07" ; Alias "cdc14" ; db_xref "SPD:31/31H04" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0034613; cellular protein localization
GO:0007346; regulation of mitotic cell cycle
GO:0031028; septation initiation signaling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8334307; date=19700101 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:8334307; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, multinucleate; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "cdc14" ; product "SIN component Cdc14" ;
chromosome2 GeneDB mRNA 1274979 1277098 . - . mRNA SPBC3D6.04c ; systematic_id "SPBC3D6.04c" ; colour "2" ; gene "mad1 ||| SPBC3D6.04c" ; Alias "mad1" ; db_xref "SPD:37/37D06" ; GO "; condensed nuclear chromosome kinetochore
GO:0007094; mitotic spindle checkpoint
GO:0005515; protein binding" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGL086W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=name description, Mitotic Arrest Deficient; date=20100606" ; primary_name "mad1" ; product "mitotic spindle checkpoint protein Mad1" ;
chromosome2 GeneDB mRNA 958669 960389 . - . mRNA SPBC646.17c ; systematic_id "SPBC646.17c" ; colour "2" ; gene "dic1 ||| SPBC646.17c ||| SPBP35G2.01c ||| SPBC855.01c ||| mug44" ; Alias "dic1" ; db_xref "SPD:35/35F04" ; synonym "SPBC855.01c ||| SPBP35G2.01c ||| mug44" ; GO "GO:0030286; dynein complex
GO:0030989; horsetail nuclear movement
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dic1" ; product "dynein intermediate chain Dic1" ;
chromosome2 GeneDB mRNA 2890645 2891823 . + . mRNA SPBP4H10.10 ; db_xref "SPD:18/18G01" ; systematic_id "SPBP4H10.10" ; colour "10" ; GO "GO:0004252; serine-type endopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPBC13E7.11; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; gene "SPBP4H10.10" ; product "rhomboid family protease" ;
chromosome2 GeneDB mRNA 4243792 4247092 . + . mRNA SPBC16G5.16 ; db_xref "SPD:29/29F07" ; systematic_id "SPBC16G5.16" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC16G5.16" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome2 GeneDB mRNA 1323589 1324140 . + . mRNA SPBC27B12.02 ; systematic_id "SPBC27B12.02" ; colour "8" ; gene "SPBC30B4.10 ||| SPBC27B12.02" ; Alias "SPBC30B4.10" ; db_xref "SPD:01/01H03" ; synonym "SPBC30B4.10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; primary_name "SPBC30B4.10" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2930386 2931189 . - . mRNA SPBC1703.08c ; db_xref "SPD:43/43C08" ; systematic_id "SPBC1703.08c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER183C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030272; 5-formyltetrahydrofolate cyclo-ligase activity
GO:0009396; folic acid and derivative biosynthesis
GO:0005739; mitochondrion" ; gene "SPBC1703.08c" ; product "5-formyltetrahydrofolate cyclo-ligase (predicted)" ; EC_number "6.3.3.2" ;
chromosome2 GeneDB mRNA 436160 438856 . - . mRNA SPBC582.10c ; db_xref "SPD:29/29C11" ; systematic_id "SPBC582.10c" ; colour "7" ; GO "GO:0006289; nucleotide-excision repair
GO:0000113; nucleotide-excision repair factor 4 complex
GO:0008094; DNA-dependent ATPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YBR114W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC582.10c" ; product "ATP-dependent DNA helicase Rhp16b (predicted)" ;
chromosome2 GeneDB mRNA 2813185 2819294 . + . mRNA SPBC19C7.02 ; systematic_id "SPBC19C7.02" ; colour "2" ; gene "ubr1 ||| SPBC32F12.14 ||| SPBC19C7.02" ; Alias "ubr1" ; db_xref "SPD:34/34B12" ; synonym "SPBC32F12.14" ; GO "GO:0005634; nucleus
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0031144; proteasome localization
GO:0016567; protein ubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=zf-UBR1 type; date=20060726 ||| term=orthologous to S. cerevisiae YGR184C and YLR024C; date=19700101 ||| term=target is Cut8; db_xref=PMID:16096059; date=19700101 ||| term=target is Mei2; db_xref=PMID:11702950; date=20071120 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706" ; primary_name "ubr1" ; product "N-end-recognizing protein Ubr1" ;
chromosome2 GeneDB mRNA 4272341 4274665 . - . mRNA SPBC16A3.13 ; systematic_id "SPBC16A3.13" ; colour "2" ; db_xref "SPD:28/28C12" ; Alias "meu7" ; synonym "aah4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, glycosylated; qualifier=N-linked; cv=pt_mod; date=20060611 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060611 ||| term=name description, Meiotic Expression Upregulated; db_xref=PMID:11376151; cv=name_description; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20080908 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=protein sequence feature, repeat containing; date=20100427 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=19700101" ; GO "GO:0009986; cell surface
GO:0009897; external side of plasma membrane
GO:0004556; alpha-amylase activity
GO:0008360; regulation of cell shape
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "meu7" ; product "alpha-amylase homolog Aah4" ; EC_number "3.2.1.1" ;
chromosome2 GeneDB mRNA 3607199 3609255 . + . mRNA SPBC16D10.06 ; systematic_id "SPBC16D10.06" ; colour "2" ; gene "SPBC16D10.06" ; Alias "zrt1" ; db_xref "SPD:19/19E07" ; GO "GO:0071276; cellular response to cadmium ion
GO:0034224; cellular response to zinc ion starvation
GO:0055069; zinc ion homeostasis
GO:0034224; cellular response to zinc ion starvation
GO:0033217; regulation of transcription from RNA polymerase II promoter in response to iron ion starvation
GO:0005385; high affinity zinc uptake transmembrane transporter activity
GO:0006830; high-affinity zinc ion transport
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL255W and YLR130C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18203864; date=20090110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "zrt1" ; product "ZIP zinc transporter Zrt1" ;
chromosome2 GeneDB mRNA 544723 547002 . - . mRNA SPBC354.02c ; systematic_id "SPBC354.02c" ; colour "2" ; gene "sec61 ||| SPBC354.02c" ; Alias "sec61" ; db_xref "SPD:26/26E09" ; GO "GO:0005783; endoplasmic reticulum
GO:0005784; translocon complex
GO:0008565; protein transporter activity
GO:0043022; ribosome binding
GO:0006616; SRP-dependent cotranslational protein targeting to membrane, translocation
GO:0006620; posttranslational protein targeting to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YLR378C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; primary_name "sec61" ; product "translocon alpha subunit Sec61" ;
chromosome2 GeneDB mRNA 2510785 2511898 . - . mRNA SPBC365.09c ; db_xref "SPD:12/12F11" ; systematic_id "SPBC365.09c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006261; DNA replication" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YOR077W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human KIN ortholog; date=20100909" ; gene "SPBC365.09c" ; product "human KIN ortholog (predicted)" ;
chromosome2 GeneDB mRNA 2515260 2516188 . + . mRNA SPBC365.11 ; db_xref "SPD:10/10B06" ; systematic_id "SPBC365.11" ; colour "10" ; GO "GO:0016192; vesicle-mediated transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GRIP domain; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC365.11" ; product "GRIP domain protein" ;
chromosome2 GeneDB mRNA 3871165 3873641 . - . mRNA SPBC211.02c ; systematic_id "SPBC211.02c" ; colour "2" ; gene "cwf3 ||| syf1 ||| SPBC211.02c" ; Alias "cwf3" ; db_xref "SPD:46/46H05" ; synonym "syf1" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR416W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf3" ; product "complexed with Cdc5 protein Cwf3" ;
chromosome2 GeneDB mRNA 3842842 3843778 . - . mRNA SPBC23E6.03c ; systematic_id "SPBC23E6.03c" ; colour "7" ; gene "nta1 ||| SPBC23E6.03c" ; Alias "nta1" ; db_xref "SPD:12/12E05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0008418; protein N-terminal asparagine amidohydrolase activity
GO:0031363; N-terminal protein amino acid deamination
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0006530; asparagine catabolic process" ; primary_name "nta1" ; product "protein N-terminal amidase Nta1 (predicted)" ; EC_number "3.5.1.-" ;
chromosome2 GeneDB mRNA 3997671 3998438 . + . mRNA SPBC3B9.05 ; db_xref "SPD:06/06D12" ; systematic_id "SPBC3B9.05" ; colour "7" ; GO "GO:0045041; protein import into mitochondrial intermembrane space
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CHY; date=19700101 ||| term=orthologous to S. cerevisiae YKL084W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC3B9.05" ; product "helper of TIM (predicted)" ;
chromosome2 GeneDB mRNA 2518996 2520812 . - . mRNA SPBC365.13c ; systematic_id "SPBC365.13c" ; colour "2" ; gene "hba1 ||| caf1 ||| SPBC365.13c" ; Alias "hba1" ; db_xref "SPD:32/32F04" ; synonym "caf1" ; GO "GO:0005654; nucleoplasm
GO:0005634; nucleus
GO:0008536; Ran GTPase binding
GO:0034599; cellular response to oxidative stress
GO:0006611; protein export from nucleus
GO:0071238; cellular response to brefeldin A
GO:0071313; cellular response to caffeine
GO:0000056; ribosomal small subunit export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL063C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=phenotype, localization defects, nuclear accumulation of Pap1 and Sty1; qualifier=deletion; cv=phenotype; db_xref=PMID:12896976; date=20090826 ||| term=phenotype, resistance to caffeine; qualifier=deletion; db_xref=PMID:12896976; date=20100628" ; primary_name "hba1" ; product "Ran GTPase binding protein Hba1" ;
chromosome2 GeneDB mRNA 1865977 1867515 . - . mRNA SPBC3H7.09 ; systematic_id "SPBC3H7.09" ; colour "2" ; gene "mug142 ||| SPBC3H7.09" ; Alias "mug142" ; db_xref "SPD:16/16B01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-DHHC type; date=19700101 ||| term=orthologous to S. cerevisiae YLR246W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0018345; protein amino acid palmitoylation
GO:0030437; sporulation (sensu Fungi)
GO:0031211; palmitoyltransferase complex
GO:0006612; protein targeting to membrane" ; primary_name "mug142" ; product "palmitoyltransferase (predicted)" ; EC_number "2.3.1.-" ;
chromosome2 GeneDB mRNA 2881775 2884084 . + . mRNA SPBP4H10.07 ; db_xref "SPD:36/36A08" ; systematic_id "SPBP4H10.07" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=similar to S. pombe SPCC4G3.12c (paralog); date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPBP4H10.07" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB mRNA 190207 191676 . - . mRNA SPBC1198.10c ; systematic_id "SPBC1198.10c" ; colour "7" ; gene "SPBC1198.10c ||| slm5" ; Alias "slm5" ; db_xref "KEGG:MAP00252; ||| KEGG:MAP00970; ||| SPD:23/23F09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; GO "GO:0006421; asparaginyl-tRNA aminoacylation
GO:0004816; asparagine-tRNA ligase activity
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0003676; nucleic acid binding" ; primary_name "slm5" ; product "mitochondrial asparagine-tRNA ligase Slm5 (predicted)" ; EC_number "6.1.1.22" ;
chromosome2 GeneDB mRNA 4226799 4228555 . + . mRNA SPBC16G5.08 ; systematic_id "SPBC16G5.08" ; colour "7" ; gene "trp4 ||| SPBC16G5.08" ; note "assignment made from mapping data" ; Alias "trp4" ; db_xref "SPD:16/16D01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR354W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0000162; tryptophan biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004048; anthranilate phosphoribosyltransferase activity" ; primary_name "trp4" ; product "phosphoribosylanthranilate transferase Trp4 (predicted)" ; EC_number "2.4.2.18" ;
chromosome2 GeneDB mRNA 3531760 3532188 . - . mRNA SPBC1105.13c ; db_xref "SPD:03/03E06" ; systematic_id "SPBC1105.13c" ; colour "8" ; GO "GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC1105.13c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1185476 1187410 . - . mRNA SPBC4.02c ; db_xref "SPD:35/35E05" ; systematic_id "SPBC4.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR265C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC4.02c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 3679990 3681031 . + . mRNA SPBP8B7.22 ; systematic_id "SPBP8B7.22" ; colour "7" ; gene "erd2 ||| SPBP8B7.22" ; Alias "erd2" ; db_xref "SPD:08/08G05" ; GO "GO:0006621; protein retention in ER
GO:0030176; integral to endoplasmic reticulum membrane
GO:0045015; HDEL sequence binding
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL040C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "erd2" ; product "HDEL receptor (predicted)" ;
chromosome2 GeneDB mRNA 669691 673762 . - . mRNA SPBC947.04 ; db_xref "SPD:47/47E03" ; systematic_id "SPBC947.04" ; colour "12" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=DIPSY domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; evidence=ISS; qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; gene "SPBC947.04" ; product "cell surface glycoprotein (predicted), DIPSY family" ;
chromosome2 GeneDB mRNA 4395978 4397099 . - . mRNA SPBC1289.07c ; systematic_id "SPBC1289.07c" ; colour "2" ; gene "rpc40 ||| SPBC1289.07c ||| rpa42" ; Alias "rpc40" ; db_xref "SPD:32/32D03" ; synonym "rpa42" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0005666; DNA-directed RNA polymerase III complex
GO:0006360; transcription from RNA polymerase I promoter
GO:0006383; transcription from RNA polymerase III promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpc40" ; product "DNA-directed RNA polymerase I and III subunit Rpc40" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB mRNA 2791360 2794106 . + . mRNA SPBC32F12.04 ; systematic_id "SPBC32F12.04" ; colour "2" ; db_xref "SPD:40/40F08" ; Alias "gtb1" ; synonym "tug1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YLR212C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000923; equatorial microtubule organizing center
GO:0000930; gamma-tubulin complex
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0010687; site selection involved in cell cycle cytokinesis
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0007020; microtubule nucleation
GO:0000070; mitotic chromosome segregation
GO:0007051; spindle organization and biogenesis
GO:0005515; protein binding" ; primary_name "gtb1" ; product "gamma-tubulin" ;
chromosome2 GeneDB mRNA 2405319 2405969 . - . mRNA SPBC1921.01c ; systematic_id "SPBC1921.01c" ; colour "7" ; gene "rpl3701 ||| rpl37-1 ||| rpl37 ||| SPBC1921.01c" ; Alias "rpl35b" ; obsolete_name "SPBC29C10.01c ||| rpl3701" ; db_xref "SPD:39/39H01" ; synonym "rpl37-1 ||| rpl37" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0019843; rRNA binding
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR234C and YPL143W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl35b" ; product "60S ribosomal protein L35a (predicted)" ;
chromosome2 GeneDB mRNA 719806 720252 . + . mRNA SPBC119.04 ; systematic_id "SPBC119.04" ; colour "2" ; gene "mei3 ||| SPBC119.04" ; db_xref "SPD:42/42B03" ; Alias "mei3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=target of Pka1; qualifier=phosphorylated_by; db_xref=PMID:12664134; date=20100825" ; primary_name "mei3" ; product "meiosis inducing protein Mei3" ;
chromosome2 GeneDB mRNA 3196491 3196937 . + . mRNA SPBC776.11 ; systematic_id "SPBC776.11" ; colour "2" ; gene "rpl2801 ||| rpl28-1 ||| SPBC776.11" ; Alias "rpl2801" ; db_xref "SPD:39/39G12" ; synonym "rpl28-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL103W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl2801" ; product "60S ribosomal protein L27/L28" ;
chromosome2 GeneDB mRNA 4335587 4336410 . + . mRNA SPBC16C6.05 ; db_xref "SPD:07/07B04" ; systematic_id "SPBC16C6.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPBC16C6.05" ; product "mitochondrial translation initiation factor (predicted)" ;
chromosome2 GeneDB mRNA 1383541 1385081 . - . mRNA SPBC8D2.14c ; systematic_id "SPBC8D2.14c" ; colour "7" ; gene "sed5 ||| SPBC8D2.14c" ; Alias "sed5" ; db_xref "SPD:32/32C11" ; GO "GO:0005484; SNAP receptor activity
GO:0016192; vesicle-mediated transport
GO:0005801; Golgi cis face" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sed5" ; product "SNARE Sed5 (predicted)" ;
chromosome2 GeneDB mRNA 1341962 1343058 . - . mRNA SPBC27B12.09c ; db_xref "SPD:32/32A01" ; systematic_id "SPBC27B12.09c" ; colour "7" ; GO "GO:0032592; integral to mitochondrial membrane
GO:0005739; mitochondrion
GO:0015230; FAD transmembrane transporter activity
GO:0035350; FAD transmembrane transport
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL134W; date=19700101 ||| term=mitochondrial carrier; date=20070920 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=mitochondrial carrier; date=19700101" ; gene "SPBC27B12.09c" ; product "mitochondrial FAD transporter (predicted)" ;
chromosome2 GeneDB mRNA 22279 23529 . - . mRNA SPBC1348.08c ; systematic_id "SPBC1348.08c" ; colour "10" ; gene "SPBC1348.08c" ; obsolete_name "SPAC1348.08c" ; db_xref "SPD:51/51D02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=GLEYA domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; evidence=ISS; qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; product "cell surface glycoprotein (predicted)" ;
chromosome2 GeneDB mRNA 4050410 4051402 . - . mRNA SPBC215.11c ; db_xref "SPD:12/12G12" ; systematic_id "SPBC215.11c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBC215.11c" ; product "aldo/keto reductase, unknown biological role" ;
chromosome2 GeneDB mRNA 4484059 4485156 . + . mRNA SPBPB2B2.11 ; systematic_id "SPBPB2B2.11" ; colour "7" ; gene "SPBPB2B2.11" ; note "appears to be part of a galactose metabolism cluster" ; db_xref "SPD:50/50C06" ; GO "GO:0042125; protein amino acid galactosylation
GO:0031506; cell wall glycoprotein biosynthetic process
GO:0006012; galactose metabolic process
GO:0006012; galactose metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TGDS ortholog; date=20100625 ||| term=warning, NAS annotations are inferred from genomic location; date=20101012" ; product "nucleotide-sugar 4,6-dehydratase (predicted)" ;
chromosome2 GeneDB mRNA 4430190 4431533 . + . mRNA SPBC8E4.05c ; db_xref "SPD:20/20G09" ; systematic_id "SPBC8E4.05c" ; colour "10" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible horizontal transfer; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100902" ; gene "SPBC8E4.05c" ; product "fumarate lyase superfamily" ; note "most similar to bacterial 3-carboxy-cis,cis- muconate cycloisomerase" ;
chromosome2 GeneDB mRNA 4268920 4270685 . + . mRNA SPBC16A3.15c ; systematic_id "SPBC16A3.15c" ; colour "2" ; gene "nda2 ||| SPBC16A3.15c" ; Alias "nda2" ; db_xref "SPD:33/33A08" ; GO "GO:0005874; microtubule
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0005525; GTP binding
GO:0005200; structural constituent of cytoskeleton
GO:0046982; protein heterodimerization activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=20070219 ||| term=orthologous to S. cerevisiae YML085C and YML124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nda2" ; product "tubulin alpha 1" ;
chromosome2 GeneDB mRNA 3350848 3352845 . + . mRNA SPBC11C11.03 ; systematic_id "SPBC11C11.03" ; colour "2" ; gene "ndc80 ||| ndc10 ||| tid3 ||| SPBC11C11.03" ; Alias "ndc80" ; db_xref "SPD:27/27B05" ; synonym "ndc10 ||| tid3" ; GO "GO:0031617; NMS complex
GO:0031262; Ndc80 complex
; condensed nuclear chromosome kinetochore
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005515; protein binding
GO:0005515; protein binding
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0000070; mitotic sister chromatid segregation
GO:0019236; response to pheromone" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YIL144W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ndc80" ; product "spindle pole body protein Ndc80" ;
chromosome2 GeneDB mRNA 1465811 1467431 . - . mRNA SPBC32H8.08c ; systematic_id "SPBC32H8.08c" ; colour "7" ; gene "SPBC32H8.08c" ; Alias "omh5" ; obsolete_name "pi016 ||| SPACTOKYO_453.20" ; db_xref "SPD:49/49B08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL029C and YIL085C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100525" ; GO "GO:0000139; Golgi membrane
GO:0000032; cell wall mannoprotein biosynthesis
GO:0035268; protein amino acid mannosylation
GO:0000026; alpha-1,2-mannosyltransferase activity" ; primary_name "omh5" ; product "alpha-1,2-mannosyltransferase Omh5 (predicted)" ;
chromosome2 GeneDB mRNA 2155273 2156445 . + . mRNA SPBC1711.11 ; db_xref "SPD:43/43H09" ; systematic_id "SPBC1711.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YJL036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0006623; protein targeting to vacuole
GO:0005737; cytoplasm
GO:0000407; pre-autophagosomal structure
GO:0005776; autophagic vacuole
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0032258; CVT pathway
GO:0034498; early endosome to Golgi transport
GO:0034727; piecemeal autophagy of nucleus" ; product "autophagy associated protein (predicted)" ;
chromosome2 GeneDB mRNA 1516727 1517204 . + . mRNA SPBC83.04 ; systematic_id "SPBC83.04" ; colour "2" ; gene "apc15 ||| SPBC83.04" ; Alias "apc15" ; db_xref "SPD:04/04D07" ; GO "GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0016567; protein ubiquitination
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR025W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "apc15" ; product "anaphase-promoting complex subunit Apc15" ;
chromosome2 GeneDB mRNA 3949158 3953778 . - . mRNA SPBC26H8.04c ; db_xref "SPD:30/30H06" ; systematic_id "SPBC26H8.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR138W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human DEPDC5 ortholog; date=20100727" ; colour "10" ; gene "SPBC26H8.04c" ; product "DEP domain protein" ;
chromosome2 GeneDB mRNA 4275226 4277062 . + . mRNA SPBC16A3.12c ; db_xref "SPD:26/26A11" ; systematic_id "SPBC16A3.12c" ; colour "7" ; GO "GO:0016298; lipase activity
GO:0004771; sterol esterase activity
GO:0006629; lipid metabolism
GO:0006696; ergosterol metabolic process
GO:0044242; cellular lipid catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC16A3.12c" ; product "triglyceride lipase-cholesterol esterase (predicted)" ;
chromosome2 GeneDB mRNA 1843428 1844864 . + . mRNA SPBC28E12.04 ; db_xref "SPD:16/16E06" ; systematic_id "SPBC28E12.04" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC28E12.04" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 687347 699886 . + . mRNA SPBPJ4664.02 ; systematic_id "SPBPJ4664.02" ; colour "12" ; gene "SPBPJ4664.02" ; note "~250-270 copies of a 12 AA repeat, NSSTPITSSSIL" ; db_xref "SPD:49/49H12" ; GO "GO:0010339; external side of cell wall
GO:0007155; cell adhesion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100104" ; product "cell surface glycoprotein (predicted)" ;
chromosome2 GeneDB mRNA 1996053 1999077 . - . mRNA SPBC1A4.10c ; systematic_id "SPBC1A4.10c" ; colour "2" ; gene "pmc1 ||| SPBC1A4.10c ||| SPBP23A10.01c ||| med14" ; Alias "pmc1" ; db_xref "SPD:33/33H06" ; synonym "SPBP23A10.01c ||| med14" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR071C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene name conflict; date=20091118" ; primary_name "pmc1" ; product "mediator complex subunit Pmc1" ;
chromosome2 GeneDB mRNA 1958105 1959976 . + . mRNA SPBC1E8.02 ; db_xref "SPD:36/36F02" ; systematic_id "SPBC1E8.02" ; colour "7" ; GO "GO:0032446; protein modification by small protein conjugation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1E8.02" ; product "ubiquitin family protein (predicted)" ;
chromosome2 GeneDB mRNA 3616628 3617730 . + . mRNA SPBC16D10.09 ; systematic_id "SPBC16D10.09" ; colour "2" ; gene "pcn1 ||| pcn ||| SPBC16D10.09" ; Alias "pcn1" ; db_xref "SPD:32/32A11" ; synonym "pcn" ; GO "GO:0043626; PCNA complex
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0030337; DNA polymerase processivity factor activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000077; DNA damage checkpoint
GO:0006271; DNA strand elongation
GO:0006301; postreplication repair
GO:0006301; postreplication repair
GO:0006301; postreplication repair
GO:0007346; regulation of mitotic cell cycle
GO:0034644; cellular response to UV
GO:0010212; response to ionizing radiation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:8663159; date=20100705 ||| term=orthologous to S. cerevisiae YBR088C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, ubiquitinated; qualifier=during_S_phase|during_DNA_damage;evidence=IDA; residue=K164; cv=pt_mod; db_xref=PMID:16641370; date=20060508 ||| term=modification, ubiquitinated; qualifier=during_G2_phase|during_DNA_damage; evidence=IDA; residue=K164; cv=pt_mod; db_xref=PMID:16641370; date=20060508" ; primary_name "pcn1" ; product "PCNA" ;
chromosome2 GeneDB mRNA 2092851 2094336 . + . mRNA SPBC18E5.10 ; systematic_id "SPBC18E5.10" ; colour "7" ; gene "SPBC18E5.10" ; note "previously annotated as respiratory chain NADH dehydrogenase complex, this mapping was removed due to lack of the remaining 40 subunits found in mammals (PMID:1518044)" ; db_xref "SPD:21/21H10" ; GO "GO:0005739; mitochondrion
GO:0016226; iron-sulfur cluster assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "iron sulfur cluster assembly protein (predicted)" ;
chromosome2 GeneDB mRNA 608171 611284 . + . mRNA SPBC839.06 ; systematic_id "SPBC839.06" ; colour "2" ; gene "cta3 ||| SPBC839.06" ; Alias "cta3" ; obsolete_name "SPBC24E9.06" ; db_xref "SPD:47/47H02" ; GO "GO:0070588; transmembrane calcium ion transport
GO:0005388; calcium-transporting ATPase activity
GO:0006874; calcium ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=gene expression, expression induced by salt stress; db_xref=PMID:10428498; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDR038C and YDR039C and YDR040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target of Wis1-Sty1 MAPKK-MAPK signaling pathway; db_xref=PMID:10428498; date=20100122" ; primary_name "cta3" ; product "P-type ATPase, calcium transporting Cta3" ;
chromosome2 GeneDB mRNA 1255387 1257386 . - . mRNA SPBC651.09c ; db_xref "SPD:36/36C08" ; systematic_id "SPBC651.09c" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0016593; Cdc73/Paf1 complex
GO:0016571; histone methylation
GO:0016574; histone ubiquitination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL244W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC651.09c" ; product "RNA polymerase II associated Paf1 complex (predicted)" ;
chromosome2 GeneDB mRNA 350692 352369 . - . mRNA SPBC1271.09 ; db_xref "SPD:35/35B02" ; systematic_id "SPBC1271.09" ; colour "7" ; GO "GO:0001406; glycerophosphodiester transporter activity
GO:0005886; plasma membrane
GO:0001407; glycerophosphodiester transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YCR098C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1271.09" ; product "glycerophosphodiester transporter (predicted)" ;
chromosome2 GeneDB mRNA 3830083 3830907 . + . mRNA SPBC21C3.19 ; db_xref "SPD:01/01F11" ; systematic_id "SPBC21C3.19" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016070; RNA metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR087W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC21C3.19" ; product "SBDS family protein Rtc3 (predicted)" ;
chromosome2 GeneDB mRNA 3508000 3509101 . - . mRNA SPBC1105.03c ; systematic_id "SPBC1105.03c" ; colour "7" ; gene "mrpl16 ||| SPBC1105.03c" ; Alias "mrpl16" ; db_xref "SPD:07/07D11" ; GO "GO:0003735; structural constituent of ribosome
GO:0000048; peptidyltransferase activity
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL038W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl16" ; product "mitochondrial ribosomal protein subunit L16 (predicted)" ;
chromosome2 GeneDB mRNA 3957408 3958395 . + . mRNA SPBC26H8.06 ; systematic_id "SPBC26H8.06" ; colour "2" ; gene "grx4 ||| SPBC26H8.06" ; Alias "grx4" ; db_xref "SPD:08/08H06" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008794; arsenate reductase (glutaredoxin) activity
GO:0015035; protein disulfide oxidoreductase activity
GO:0034599; cellular response to oxidative stress
GO:0019430; removal of superoxide radicals" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15796926; date=19700101 ||| term=orthologous to S. cerevisiae YDR098C and YER174C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111" ; primary_name "grx4" ; product "glutaredoxin Grx4" ;
chromosome2 GeneDB mRNA 4354232 4357145 . - . mRNA SPBC16C6.13c ; systematic_id "SPBC16C6.13c" ; colour "7" ; gene "sec27 ||| SPBC16C6.13c" ; Alias "sec27" ; obsolete_name "SPBC244.03" ; db_xref "SPD:28/28G08" ; GO "GO:0030126; COPI vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec27" ; product "coatomer beta' subunit (predicted)" ;
chromosome2 GeneDB mRNA 2056668 2057602 . - . mRNA SPBC29A3.10c ; systematic_id "SPBC29A3.10c" ; colour "7" ; gene "atp14 ||| SPBC29A3.10c" ; Alias "atp14" ; db_xref "SPD:05/05A01" ; GO "GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR295C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "atp14" ; product "F1-ATPase subunit H (predicted)" ;
chromosome2 GeneDB mRNA 3443267 3444311 . + . mRNA SPBC2G2.05 ; systematic_id "SPBC2G2.05" ; colour "7" ; gene "rpl1603 ||| rpl16c ||| SPBC2G2.05" ; Alias "rpl1603" ; db_xref "SPD:31/31G04" ; synonym "rpl16c" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL133C and YNL069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl1603" ; product "60S ribosomal protein L13/L16 (predicted)" ;
chromosome2 GeneDB mRNA 344972 346455 . - . mRNA SPBC1271.11 ; db_xref "SPD:16/16F03" ; systematic_id "SPBC1271.11" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1271.11" ; product "mitochondrial tricarboxylate transporter (predicted)" ;
chromosome2 GeneDB mRNA 977031 979390 . + . mRNA SPBP35G2.07 ; systematic_id "SPBP35G2.07" ; colour "2" ; gene "ilv1 ||| SPBP35G2.07" ; Alias "ilv1" ; db_xref "SPD:33/33F03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003984; acetolactate synthase activity
GO:0005739; mitochondrion
GO:0009097; isoleucine biosynthesis
GO:0005948; acetolactate synthase complex" ; primary_name "ilv1" ; product "acetolactate synthase catalytic subunit" ; EC_number "2.2.1.6" ;
chromosome2 GeneDB mRNA 2984572 2985894 . - . mRNA SPBC2D10.11c ; systematic_id "SPBC2D10.11c" ; colour "7" ; gene "nap2 ||| SPBC2D10.11c ||| nap12" ; Alias "nap2" ; db_xref "SPD:18/18A02" ; synonym "nap1.2 ||| nap12" ; GO "GO:0000790; nuclear chromatin
GO:0042393; histone binding
GO:0006334; nucleosome assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR048C; date=19700101 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nap2" ; product "nucleosome assembly protein Nap2 (predicted)" ;
chromosome2 GeneDB mRNA 4271131 4272005 . - . mRNA SPBC16A3.14 ; db_xref "SPD:15/15F01" ; systematic_id "SPBC16A3.14" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR101W and YDR347W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome" ; gene "SPBC16A3.14" ; product "mitochondrial ribosomal protein subunit S26 (predicted)" ; EC_number "1.15.1.1" ;
chromosome2 GeneDB mRNA 4133719 4138580 . + . mRNA SPBC1861.03 ; systematic_id "SPBC1861.03" ; colour "7" ; gene "mak10 ||| SPBC1861.03" ; Alias "mak10" ; db_xref "SPD:37/37G07" ; GO "GO:0031417; NatC complex
GO:0017196; N-terminal peptidyl-methionine acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL053C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; primary_name "mak10" ; product "NatC N-acetyltransferase complex subunit Mak10 (predicted)" ;
chromosome2 GeneDB mRNA 922691 926579 . + . mRNA SPBC646.02 ; systematic_id "SPBC646.02" ; colour "2" ; gene "cwf11 ||| SPBC646.02" ; Alias "cwf11" ; db_xref "SPD:48/48F03" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf11" ; product "complexed with Cdc5 protein Cwf11" ;
chromosome2 GeneDB mRNA 2120286 2120927 . + . mRNA SPBC23G7.11 ; systematic_id "SPBC23G7.11" ; colour "2" ; gene "SPBC23G7.11 ||| mag2" ; Alias "mag2" ; db_xref "SPD:07/07D02" ; GO "GO:0003905; alkylbase DNA N-glycosylase activity
GO:0006307; DNA dealkylation involved in DNA repair
GO:0005634; nucleus
GO:0006285; base-excision repair, AP site formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER142C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "mag2" ; product "DNA-3-methyladenine glycosidase Mag2" ; EC_number "3.2.2.21" ;
chromosome2 GeneDB mRNA 979453 980718 . - . mRNA SPBP35G2.08c ; systematic_id "SPBP35G2.08c" ; colour "2" ; gene "SPBP35G2.08c ||| air1" ; Alias "air1" ; db_xref "SPD:15/15H06" ; GO "GO:0031499; TRAMP complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0016078; tRNA catabolism
GO:0016077; snoRNA catabolism
GO:0016075; rRNA catabolism
GO:0016076; snRNA catabolism
GO:0043630; ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=orthologous to S. cerevisiae YIL079C and YDL175C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "air1" ; product "zinc knuckle TRAMP complex subunit Air1" ;
chromosome2 GeneDB mRNA 2571077 2573477 . + . mRNA SPBC29A10.15 ; systematic_id "SPBC29A10.15" ; colour "2" ; gene "orc1 ||| orp1 ||| SPBC29A10.15 ||| cdc30" ; Alias "orc1" ; db_xref "SPD:51/51E07" ; synonym "orp1 ||| cdc30" ; GO "GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0003688; DNA replication origin binding
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0005656; pre-replicative complex
GO:0000790; nuclear chromatin
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0031261; DNA replication preinitiation complex
GO:0006261; DNA-dependent DNA replication
GO:0005634; nucleus
GO:0007090; regulation of S phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; db_xref=PMID:8618924; date=20100705 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:8895665; allele=cdc30-4; date=20100705 ||| term=gene expression, constitutive; db_xref=PMID:8618924; date=20100705 ||| term=AT hook protein; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YML065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "orc1" ; product "origin recognition complex subunit Orc1" ;
chromosome2 GeneDB mRNA 1494857 1495908 . + . mRNA SPBC11B10.06 ; systematic_id "SPBC11B10.06" ; colour "2" ; gene "sws1 ||| SPBC11B10.06" ; Alias "sws1" ; obsolete_name "pi005 ||| SPACTOKYO_453.32" ; db_xref "SPD:41/41D10" ; GO "GO:0005654; nucleoplasm
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000725; recombinational repair
GO:0000725; recombinational repair
GO:0000725; recombinational repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-SWIM; date=19700101 ||| term=orthologous to S. cerevisiae YDR078C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, sensitive to MMS; cv=phenotype; db_xref=PMID:16710300; date=20091215" ; primary_name "sws1" ; product "SWIM domain containing-Srs2 interacting protein 1" ;
chromosome2 GeneDB mRNA 3023343 3025621 . - . mRNA SPBC15D4.07c ; systematic_id "SPBC15D4.07c" ; colour "2" ; gene "atg9 ||| apg9 ||| SPBC15D4.07c" ; Alias "atg9" ; db_xref "SPD:27/27H08" ; synonym "apg9" ; GO "GO:0005737; cytoplasm
GO:0016021; integral to membrane
GO:0032258; CVT pathway
GO:0000045; autophagic vacuole formation
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL149W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atg9" ; product "autophagy associated protein Atg9" ;
chromosome2 GeneDB mRNA 1786501 1787938 . + . mRNA SPBC18H10.09 ; db_xref "SPD:23/23A06" ; systematic_id "SPBC18H10.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-CHY; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBC18H10.09" ; product "zf-CHY type zinc finger protein" ;
chromosome2 GeneDB mRNA 743887 744380 . + . mRNA SPBC119.18 ; db_xref "SPD:51/51F07" ; systematic_id "SPBC119.18" ; colour "7" ; GO "GO:0033108; mitochondrion respiratory chain complex assembly
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL053C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC119.18" ; product "mitochondrial distribution and morphology protein Mdm35 (predicted)" ;
chromosome2 GeneDB mRNA 3851590 3852468 . - . mRNA SPBC23E6.06c ; db_xref "SPD:08/08C11" ; systematic_id "SPBC23E6.06c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR487C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0008686; 3,4-dihydroxy-2-butanone-4-phosphate synthase activity
GO:0009231; riboflavin biosynthesis
GO:0005829; cytosol
GO:0005758; mitochondrial intermembrane space" ; gene "SPBC23E6.06c" ; product "3,4-dihydroxy-2-butanone 4-phosphate synthase (predicted)" ; EC_number "3.5.4.25" ;
chromosome2 GeneDB mRNA 3469173 3471758 . + . mRNA SPBC1718.01 ; systematic_id "SPBC1718.01" ; colour "2" ; gene "pop1 ||| ste16 ||| SPBC2G2.18 ||| SPBC1718.01" ; Alias "pop1" ; db_xref "SPD:33/33G07" ; synonym "ste16 ||| SPBC2G2.18" ; GO "GO:0019005; SCF ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006995; cellular response to nitrogen starvation
GO:0000747; conjugation with cellular fusion
GO:0008054; cyclin catabolism
GO:0006511; ubiquitin-dependent protein catabolism
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA replication defects, endoreduplication; date=20100730 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9990507; date=20100730 ||| term=F-box protein; date=19700101 ||| term=WD repeat protein; db_xref=PMID:9203581; date=19700101 ||| term=orthologous to S. cerevisiae YFL009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Cdc1; db_xref=PMID:9203581; date=20100825 ||| term=target is Cdc18; db_xref=PMID:9203581; date=20100825 ||| term=target is Rum1; db_xref=PMID:9203581; date=20100825 ||| term=target is Cig2; db_xref=PMID:14970237; date=20100825 ||| term=phenotype, sterile; db_xref=PMID:9472077; date=20101013 ||| term=name description, STErile; db_xref=PMID:9472077; date=20101013" ; primary_name "pop1" ; product "cullin 1 adaptor protein Pop1" ;
chromosome2 GeneDB mRNA 2968322 2968950 . - . mRNA SPBC2D10.03c ; db_xref "SPD:04/04D04" ; systematic_id "SPBC2D10.03c" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR090C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human C1orf123 ortholog; date=20100301" ; gene "SPBC2D10.03c" ; product "DUF866 domain protein" ;
chromosome2 GeneDB mRNA 211511 212091 . + . mRNA SPBC660.09 ; systematic_id "SPBC660.09" ; colour "8" ; gene "SPBC660.09 ||| mug168" ; db_xref "SPD:02/02B08" ; Alias "mug168" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug168" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3619817 3620477 . - . mRNA SPBC16D10.11c ; systematic_id "SPBC16D10.11c" ; colour "7" ; gene "rps1801 ||| rps18-1 ||| SPBC16D10.11c" ; Alias "rps1801" ; db_xref "SPD:31/31F09" ; synonym "rps18-1" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR450W and YML026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps1801" ; product "40S ribosomal protein S18 (predicted)" ;
chromosome2 GeneDB mRNA 2959078 2959902 . - . mRNA SPBC2A9.07c ; db_xref "SPD:10/10F10" ; systematic_id "SPBC2A9.07c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PARP type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, gene structure updated; cv=warning; attribution=pers. comm. C. Arnason; date=20090924 ||| term=species distribution, conserved in Metazoa; date=20091111 ||| term=species distribution, conserved in Vertebrates; date=20091111 ||| term=human LIG3 and PARP1 ortholog; date=20091111" ; colour "10" ; gene "SPBC2A9.07c" ; product "zf-PARP type zinc finger protein" ; note "human LIG3 does not appear to be a ligase, but this region may act as a DNA nick sensor" ;
chromosome2 GeneDB mRNA 2083868 2084184 . + . mRNA SPBC18E5.06 ; systematic_id "SPBC18E5.06" ; colour "2" ; gene "rps21 ||| SPBC18E5.06" ; Alias "rps21" ; db_xref "SPD:31/31C08" ; GO "GO:0042274; ribosomal small subunit biogenesis
GO:0006412; translation
GO:0015935; small ribosomal subunit
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14623272; date=19700101 ||| term=orthologous to S. cerevisiae YKR057W and YJL136C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rps21" ; product "40S ribosomal protein S21" ;
chromosome2 GeneDB mRNA 518167 519543 . + . mRNA SPBC1685.11 ; systematic_id "SPBC1685.11" ; colour "2" ; db_xref "SPD:17/17B02" ; Alias "rlp1" ; GO "GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031297; collapsed replication fork processing
GO:0007131; meiotic recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000725; recombinational repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RecA family; db_xref=PMID:14668362; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human XRCC2 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rlp1" ; product "RecA family ATPase Rlp1" ;
chromosome2 GeneDB mRNA 1037077 1038385 . + . mRNA SPBC337.04 ; systematic_id "SPBC337.04" ; colour "2" ; gene "ppk27 ||| SPBC337.04" ; Alias "ppk27" ; db_xref "SPD:22/22G08" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YKL116C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk27" ; product "serine/threonine protein kinase Ppk27 (predicted)" ;
chromosome2 GeneDB mRNA 1247411 1249996 . + . mRNA SPBC651.06 ; systematic_id "SPBC651.06" ; colour "8" ; gene "SPBC651.06 ||| mug166 ||| csa1" ; note "COP9/signalosome associated (pers. comm. Tony Carr) ||| merged SPBC651.06 and SPBC651.07 on 26-6-2008, pers. comm. Chary Chahwan" ; Alias "mug166" ; db_xref "SPD:08/08C10" ; obsolete_name "SPBC651.07" ; synonym "csa1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; GO "GO:0045132; meiotic chromosome segregation" ; primary_name "mug166" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4282124 4283614 . + . mRNA SPBC16A3.09c ; systematic_id "SPBC16A3.09c" ; colour "7" ; gene "ufd1 ||| SPBC16A3.09c" ; Alias "ufd1" ; db_xref "SPD:40/40D12" ; GO "GO:0006511; ubiquitin-dependent protein catabolism
GO:0030433; ER-associated protein catabolism
GO:0005783; endoplasmic reticulum
GO:0034098; Cdc48p-Npl4p-Ufd1p AAA ATPase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, ubiquitin fusion degradation protein; cv=name_description; date=20091118" ; primary_name "ufd1" ; product "Cdc48-Ufd1-Npl4 complex component Ufd1 (predicted)" ;
chromosome2 GeneDB mRNA 1191315 1194118 . - . mRNA SPBC4.04c ; systematic_id "SPBC4.04c" ; colour "2" ; gene "mcm2 ||| cdc19 ||| nda1 ||| SPBC4.04c" ; Alias "mcm2" ; db_xref "SPD:33/33H09" ; synonym "cdc19 ||| nda1" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0042555; MCM complex
GO:0005737; cytoplasm
GO:0031390; nuclear replication fork
GO:0005634; nucleus
GO:0005656; pre-replicative complex
GO:0004003; ATP-dependent DNA helicase activity
GO:0006270; DNA replication initiation
GO:0006271; DNA strand elongation during DNA replication
GO:0007090; regulation of S phase of mitotic cell cycle
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:7876346; date=20100907 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YBL023C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705" ; primary_name "mcm2" ; product "MCM complex subunit Mcm2" ;
chromosome2 GeneDB mRNA 399003 400684 . - . mRNA SPBC106.11c ; systematic_id "SPBC106.11c" ; colour "2" ; gene "plg7 ||| SPBC106.11c" ; Alias "plg7" ; db_xref "KEGG:MAP00561; ||| SPD:22/22H09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human PAF-AH/PLA2-G7 ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18489912; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009395; phospholipid catabolic process
GO:0003847; 1-alkyl-2-acetylglycerophosphocholine esterase activity
GO:0034599; cellular response to oxidative stress" ; primary_name "plg7" ; product "phospholipase A2, PAF family homolog" ; EC_number "3.1.1.47" ;
chromosome2 GeneDB mRNA 2393647 2394442 . + . mRNA SPBC36B7.07 ; systematic_id "SPBC36B7.07" ; colour "7" ; gene "tlg1 ||| SPBC36B7.07" ; Alias "tlg1" ; db_xref "SPD:31/31H10" ; GO "GO:0000139; Golgi membrane
GO:0005484; SNAP receptor activity
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR468C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tlg1" ; product "SNARE Tgl1 (predicted)" ;
chromosome2 GeneDB mRNA 2363900 2365730 . - . mRNA SPBC19G7.08c ; systematic_id "SPBC19G7.08c" ; colour "10" ; gene "SPBC19G7.08c" ; Alias "art1" ; db_xref "SPD:23/23D06" ; GO "GO:0005509; calcium ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110" ; primary_name "art1" ; product "arrestin family protein" ; reserved_name "art1" ;
chromosome2 GeneDB mRNA 4357918 4359583 . + . mRNA SPBC244.02c ; db_xref "SPD:23/23F03" ; systematic_id "SPBC244.02c" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HAT repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDR449C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC244.02c" ; product "U3 snoRNP-associated protein Utp6 (predicted)" ;
chromosome2 GeneDB mRNA 3852686 3855985 . - . mRNA SPBC23E6.07c ; systematic_id "SPBC23E6.07c" ; colour "2" ; gene "rfc1 ||| SPBC23E6.07c" ; Alias "rfc1" ; db_xref "SPD:29/29G10" ; GO "GO:0031390; Ctf18 RFC-like complex
GO:0005663; DNA replication factor C complex
GO:0031391; Elg1 RFC-like complex
GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear relication fork
GO:0003689; DNA clamp loader activity
GO:0006261; DNA replication
GO:0006272; leading strand elongation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16040599; date=19700101 ||| term=orthologous to S. cerevisiae YOR217W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11313445; date=20100802" ; primary_name "rfc1" ; product "DNA replication factor C complex subunit Rfc1" ;
chromosome2 GeneDB mRNA 267459 269408 . + . mRNA SPBC800.09 ; systematic_id "SPBC800.09" ; colour "2" ; db_xref "SPD:23/23E11" ; Alias "sum2" ; GO "GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0007095; mitotic G2 checkpoint
GO:0005515; protein binding
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR129W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Suppressor of Uncontrolled Mitosis; cv=name_description; date=20100126" ; primary_name "sum2" ; product "G2/M transition checkpoint protein Sum2" ;
chromosome2 GeneDB mRNA 2316043 2317478 . + . mRNA SPBC12D12.06 ; systematic_id "SPBC12D12.06" ; colour "2" ; gene "srb11 ||| SPBC12D12.06" ; Alias "srb11" ; db_xref "SPD:19/19G11" ; GO "GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YNL025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "srb11" ; product "cyclin CycC, Srb mediator subunit Srb11" ;
chromosome2 GeneDB mRNA 2876111 2877546 . - . mRNA SPBP4H10.05c ; systematic_id "SPBP4H10.05c" ; colour "2" ; gene "spe2 ||| SPBP4H10.05c" ; Alias "spe2" ; db_xref "SPD:17/17H11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004014; adenosylmethionine decarboxylase activity
GO:0015940; pantothenate biosynthesis
GO:0008295; spermidine biosynthesis
GO:0006597; spermine biosynthesis" ; primary_name "spe2" ; product "S-adenosylmethionine decarboxylase proenzyme Spe2" ; EC_number "4.1.1.50" ;
chromosome2 GeneDB mRNA 384321 386001 . + . mRNA SPBC106.06 ; systematic_id "SPBC106.06" ; colour "2" ; gene "cct4 ||| SPBC106.06" ; Alias "cct4" ; db_xref "SPD:25/25E06" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YDL143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cct4" ; product "chaperonin-containing T-complex delta subunit Cct4" ;
chromosome2 GeneDB mRNA 2419059 2420046 . - . mRNA SPBC1921.07c ; systematic_id "SPBC1921.07c" ; colour "2" ; gene "SPBC1921.07c ||| SPBC21D10.13 ||| sgf29" ; Alias "sgf29" ; db_xref "SPD:10/10H04" ; synonym "SPBC21D10.13" ; GO "GO:0016573; histone acetylation
GO:0006366; transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL010C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sgf29" ; product "SAGA complex subunit Sgf29" ;
chromosome2 GeneDB mRNA 1773023 1774406 . + . mRNA SPBC18H10.03 ; systematic_id "SPBC18H10.03" ; colour "2" ; gene "tif35 ||| SPBC18H10.03" ; Alias "tif35" ; db_xref "SPD:40/40B07" ; GO "GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
GO:0003723; RNA binding
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YDR429C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tif35" ; product "translation initiation factor eIF3g" ;
chromosome2 GeneDB mRNA 3706665 3708863 . + . mRNA SPBC19F5.03 ; db_xref "SPD:36/36D10" ; systematic_id "SPBC19F5.03" ; colour "7" ; GO "GO:0000139; Golgi membrane
GO:0005789; endoplasmic reticulum membrane
GO:0030173; integral to Golgi membrane
GO:0030176; integral to endoplasmic reticulum membrane
GO:0005741; mitochondrial outer membrane
GO:0004437; inositol or phosphatidylinositol phosphatase activity
GO:0046856; phosphatidylinositol metabolic process
GO:0046856; phosphoinositide dephosphorylation
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC19F5.03" ; product "inositol polyphosphate phosphatase (predicted)" ;
chromosome2 GeneDB mRNA 2986931 2988366 . + . mRNA SPBC2D10.12 ; systematic_id "SPBC2D10.12" ; colour "2" ; gene "rhp23 ||| SPBC2D10.12" ; Alias "rhp23" ; db_xref "SPD:40/40D09" ; GO "GO:0005634; nucleus
GO:0003684; damaged DNA binding
GO:0031593; polyubiquitin binding
GO:0043130; ubiquitin binding
GO:0030433; ER-associated protein catabolism
GO:0042177; negative regulation of protein catabolism
GO:0006289; nucleotide-excision repair
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YEL037C; date=19700101 ||| term=human HHR23A ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rhp23" ; product "Rad23 homolog Rhp23" ;
chromosome2 GeneDB mRNA 3166458 3168330 . + . mRNA SPBC609.04 ; systematic_id "SPBC609.04" ; colour "2" ; gene "caf5 ||| SPBC609.04" ; Alias "caf5" ; db_xref "SPD:45/45C07" ; GO "GO:0005886; plasma membrane
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0071313; cellular response to caffeine" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "caf5" ; product "spermine family transmembrane transporter Caf5" ;
chromosome2 GeneDB mRNA 982068 986324 . + . mRNA SPBP35G2.10 ; systematic_id "SPBP35G2.10" ; colour "2" ; gene "mit1 ||| SPBP35G2.10" ; note "CHD like Fission yeast Protein" ; Alias "mit1" ; db_xref "SPD:39/39E04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Mi2-like protein Interacting with clr Three; cv=name_description; db_xref=PMID:17289569; date=20070424 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016585; chromatin remodeling complex
GO:0006338; chromatin remodeling
GO:0008094; DNA-dependent ATPase activity
GO:0005634; nucleus
GO:0004003; ATP-dependent DNA helicase activity
GO:0005524; ATP binding
GO:0016581; NuRD complex
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0006342; chromatin silencing
GO:0005721; centric heterochromatin
GO:0031933; telomeric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0005524; ATP binding
GO:0016584; nucleosome spacing
GO:0016887; ATPase activity
GO:0033553; rDNA heterochromatin
GO:0019787; small conjugating protein ligase activity
GO:0000790; nuclear chromatin" ; primary_name "mit1" ; product "SHREC complex subunit Mit1" ;
chromosome2 GeneDB mRNA 3921659 3923567 . - . mRNA SPBC1604.05 ; systematic_id "SPBC1604.05" ; colour "7" ; gene "pgi1 ||| SPBC1604.05" ; Alias "pgi1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00030; ||| KEGG:MAP00500; ||| SPD:33/33C10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR196C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006094; gluconeogenesis
GO:0006096; glycolysis
GO:0006098; pentose-phosphate shunt
GO:0004347; glucose-6-phosphate isomerase activity
GO:0005829; cytosol" ; primary_name "pgi1" ; product "glucose-6-phosphate isomerase (predicted)" ; EC_number "5.3.1.9" ;
chromosome2 GeneDB mRNA 1038462 1040613 . - . mRNA SPBC337.05c ; systematic_id "SPBC337.05c" ; colour "2" ; gene "cct8 ||| SPBC337.05c" ; Alias "cct8" ; db_xref "SPD:33/33F06" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL008C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cct8" ; product "chaperonin-containing T-complex theta subunit Cct8" ;
chromosome2 GeneDB mRNA 3684389 3685376 . - . mRNA SPBP8B7.24c ; systematic_id "SPBP8B7.24c" ; colour "2" ; db_xref "SPD:06/06H05" ; Alias "atg8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphatidylethanolominated; qualifier=predicted; cv=pt_mod; date=20091125 ||| term=modification, lipidated; qualifier=predicted; cv=pt_mod; date=20091125" ; GO "GO:0005776; autophagic vacuole
GO:0006914; autophagy
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0006944; membrane fusion
GO:0032258; CVT pathway
GO:0000747; sexual reproduction" ; primary_name "atg8" ; product "autophagy associated protein Atg8" ;
chromosome2 GeneDB mRNA 588348 591260 . + . mRNA SPBC1706.01 ; systematic_id "SPBC1706.01" ; colour "2" ; gene "tea4 ||| SPBC1706.01 ||| wsh3" ; Alias "tea4" ; db_xref "SPD:28/28G01" ; synonym "wsh3" ; GO "GO:0031500; Tea1 cell-end complex
GO:0051285; cell cortex of cell tip
GO:0015630; microtubule cytoskeleton
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0007163; establishment and/or maintenance of cell polarity
GO:0007163; establishment and/or maintenance of cell polarity
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0010570; regulation of filamentous growth
GO:0007017; microtubule-based process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAR014C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, filament morphology aberrant; qualifier=deletion; db_xref=PMID:19542312; date=20090706 ||| term=name description, Win1- interacting SH3 domain protein; cv=name_description; date=20100126 ||| term=name description, Tip Elongation Aberrant; cv=name_description; date=20100126" ; primary_name "tea4" ; product "tip elongation aberrant protein Tea4" ;
chromosome2 GeneDB mRNA 166550 168643 . - . mRNA SPBC1683.11c ; systematic_id "SPBC1683.11c" ; colour "7" ; gene "SPBC1683.11c" ; note "assuming this is mitochondrial and involved in amino acid biosynthesis as YPR006C, rather than peroxizomal involved in glyoxylate pathway as YER065C even though YER065C is more closely related, S. pombe does not have any of the other peroxisomal glyoxylate pathway enzymes" ; db_xref "SPD:45/45A10" ; GO "GO:0046421; methylisocitrate lyase activity
GO:0006567; threonine catabolism
GO:0005759; mitochondrial matrix
GO:0019541; propionate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER065C and YPR006C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Bacteria; date=20100824" ; product "isocitrate lyase (predicted)" ; EC_number "4.1.3.1" ;
chromosome2 GeneDB mRNA 4066294 4067342 . + . mRNA SPBC1347.03 ; systematic_id "SPBC1347.03" ; colour "2" ; note "possibly a protein kinase inhibitor as related to S. cerevisiae LSP1 and PIL1" ; db_xref "SPD:32/32D04" ; Alias "meu14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20070103 ||| term=gene expression, transcriptionally regulated by Mei4; db_xref=PMID:12759375; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPCC736.15 and SPAC3C7.02c; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; GO "GO:0070056; prospore membrane leading edge
GO:0031321; prospore formation
GO:0030476; ascospore wall assembly
GO:0070057; prospore membrane spindle pole body attachment site" ; primary_name "meu14" ; product "sporulation protein Meu14" ;
chromosome2 GeneDB mRNA 3059132 3060237 . + . mRNA SPBC13E7.11 ; systematic_id "SPBC13E7.11" ; colour "7" ; gene "SPBC30D10.19c ||| SPBC13E7.11" ; Alias "SPBC30D10.19c" ; db_xref "SPD:12/12C05" ; synonym "SPBC30D10.19c" ; GO "GO:0005739; mitochondrion
GO:0008233; peptidase activity
GO:0007005; mitochondrion organization and biogenesis
GO:0045041; protein import into mitochondrial intermembrane space
GO:0006465; signal peptide processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR101W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC30D10.19c" ; product "mitochondrial rhomboid protease (predicted)" ;
chromosome2 GeneDB mRNA 1088960 1090940 . + . mRNA SPBC1734.15 ; systematic_id "SPBC1734.15" ; colour "2" ; gene "rsc4 ||| brd1 ||| SPBC1734.15" ; Alias "rsc4" ; db_xref "SPD:33/33D03" ; synonym "brd1" ; GO "GO:0016586; RSC complex
GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, chromosome segregation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to Brefeldin A ; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=bromodomain; db_xref=PMID:7565614; date=19700101 ||| term=orthologous to S. cerevisiae YKR008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110 ||| term=gene expression, transcriptionally regulates genes involved in vesicle mediated transport; db_xref=PMID:18622392; cv=gene_ex; date=20080717" ; primary_name "rsc4" ; product "RSC complex subunit Rsc4" ;
chromosome2 GeneDB mRNA 3453746 3454535 . - . mRNA SPBC2G2.10c ; systematic_id "SPBC2G2.10c" ; colour "8" ; gene "SPBC2G2.10c ||| mug110" ; db_xref "SPD:43/43C03" ; Alias "mug110" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug110" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3260887 3263087 . + . mRNA SPBC25H2.12c ; systematic_id "SPBC25H2.12c" ; colour "2" ; gene "cct7 ||| SPBC25H2.12c" ; Alias "cct7" ; db_xref "SPD:33/33E10" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL111W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cct7" ; product "chaperonin-containing T-complex eta subunit Cct7" ;
chromosome2 GeneDB mRNA 3856206 3859947 . + . mRNA SPBC23E6.08 ; systematic_id "SPBC23E6.08" ; colour "7" ; db_xref "SPD:40/40G06" ; Alias "sat1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005794; Golgi apparatus
GO:0032045; guanyl-nucleotide exchange factor complex
GO:0042147; retrograde transport, endosome to Golgi" ; primary_name "sat1" ; product "Golgi membrane exchange factor subunit Sat1 (predicted)" ;
chromosome2 GeneDB mRNA 4006690 4008027 . - . mRNA SPBC3B9.11c ; systematic_id "SPBC3B9.11c" ; colour "2" ; gene "ctf1 ||| SPBC3B9.11c" ; Alias "ctf1" ; db_xref "SPD:18/18E09" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0003723; RNA binding
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YGL044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ctf1" ; product "mRNA cleavage and polyadenylation specificity factor complex subunit Ctf1" ;
chromosome2 GeneDB mRNA 1939401 1940776 . - . mRNA SPBC16E9.12c ; systematic_id "SPBC16E9.12c" ; colour "2" ; gene "pab2 ||| SPBC16E9.12c" ; note "PMID:17213188 refers to SPBC16E6.12c in error" ; Alias "pab2" ; db_xref "SPD:07/07F06" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:17213188; date=20070813 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YIR001C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0005515; protein binding
GO:0005634; nucleus
GO:0008143; poly(A) binding
GO:0000289; poly(A) tail shortening" ; primary_name "pab2" ; product "poly(A) binding protein Pab2" ;
chromosome2 GeneDB mRNA 3193253 3195569 . - . mRNA SPBC776.10c ; systematic_id "SPBC776.10c" ; colour "7" ; gene "SPBC776.10c ||| cog6" ; Alias "cog6" ; db_xref "SPD:37/37E04" ; GO "GO:0006886; intracellular protein transport
GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cog6" ; product "Golgi transport complex peripheral subunit Cog6 (predicted)" ;
chromosome2 GeneDB mRNA 639330 640706 . + . mRNA SPBC115.01c ; systematic_id "SPBC115.01c" ; colour "7" ; gene "rrp46 ||| SPBC115.01c" ; Alias "rrp46" ; db_xref "SPD:09/09D08" ; GO "GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0000175; 3'-5'-exoribonuclease activity
GO:0003723; RNA binding
GO:0006364; 35S primary transcript processing
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR095C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rrp46" ; product "exosome subunit Rrp46 (predicted)" ;
chromosome2 GeneDB mRNA 2149069 2150801 . + . mRNA SPBC1711.08 ; db_xref "SPD:21/21D12" ; systematic_id "SPBC1711.08" ; colour "7" ; GO "GO:0006457; protein folding
GO:0033554; cellular response to stress
GO:0005737; cytoplasm
GO:0031072; heat shock protein binding
GO:0001671; ATPase activator activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR214W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1711.08" ; product "chaperone activator Aha1 (predicted)" ;
chromosome2 GeneDB mRNA 3824636 3824965 . - . mRNA SPBC21C3.16c ; systematic_id "SPBC21C3.16c" ; colour "2" ; gene "spt4 ||| SPBC21C3.16c" ; Alias "spt4" ; db_xref "SPD:01/01F09" ; GO "GO:0000790; nuclear chromatin
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0005515; protein binding
GO:0034244; negative regulation of RNA elongation from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0032044; DSIF complex
GO:0006397; mRNA processing
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR063C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19460865; date=20090712 ||| term=phenotype, sensitive to high temperature; cv=phenotype; db_xref=PMID:19460865; date=20090712 ||| term=phenotype, growth defect, slow growth at high temperatures; cv=phenotype db_xref=PMID:19460865; date=20090712 ||| term=complementation, functionally complemented by S. cerevisiae Spt4; db_xref=PMID:19460865; cv=complementation; date=20090712 ||| term=complementation, functionally complements S. cerevisiae Spt4; db_xref=PMID:19460865; cv=complementation; date=20090712 ||| term=species distribution, conserved in Eukaryotes only; date=20090712" ; primary_name "spt4" ; product "transcription elongation factor complex subunit Spt4" ;
chromosome2 GeneDB mRNA 4187250 4188740 . - . mRNA SPBC3F6.02c ; db_xref "SPD:15/15D02" ; systematic_id "SPBC3F6.02c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL001C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000252; C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity
GO:0006696; ergosterol biosynthesis
GO:0005783; endoplasmic reticulum" ; gene "SPBC3F6.02c" ; product "3 beta-hydroxysteroid dehydrogenase/delta 5-->4- isomerase (predicted)" ; EC_number "5.3.3.1" ;
chromosome2 GeneDB mRNA 2448491 2450906 . - . mRNA SPBC12C2.11 ; systematic_id "SPBC12C2.11" ; colour "7" ; gene "SPBC21D10.02 ||| SPBC12C2.11" ; Alias "SPBC21D10.02" ; db_xref "SPD:38/38C11" ; synonym "SPBC21D10.02" ; GO "GO:0004360; glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GO:0045229; external encapsulating structure organization and biogenesis
GO:0006031; chitin biosynthestic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL104C and YMR084W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC21D10.02" ; product "glutamine-fructose-6-phosphate transaminase (predicted)" ; EC_number "2.6.1.16" ;
chromosome2 GeneDB mRNA 2521193 2522952 . - . mRNA SPBC365.14c ; systematic_id "SPBC365.14c" ; colour "2" ; gene "SPBC365.14c" ; Alias "uge1" ; obsolete_name "gal10" ; db_xref "SPD:22/22F08" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human GALE ortholog; db_xref=PMID:19942659; date=20100625" ; GO "GO:0003978; UDP-glucose 4-epimerase activity
GO:0033499; galactose catabolic process via UDP- galactose
GO:0042125; protein amino acid galactosylation" ; primary_name "uge1" ; product "UDP-glucose 4-epimerase Uge1" ;
chromosome2 GeneDB mRNA 659085 660176 . + . mRNA SPBC947.08c ; systematic_id "SPBC947.08c" ; colour "2" ; gene "SPBC947.08c" ; Alias "hip4" ; db_xref "SPD:15/15B05" ; synonym "hpc2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:20976105; date=20101124 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to high temerature; qualifier=deletion; db_xref=PMID:20976105; date=20101124 ||| term=phenotype, sensitive to TBZ; qualifier=deletion; db_xref=PMID:20976105; date=20101124 ||| term=phenotype, sensitive to micritubule depolymerizing drugs; qualifier=deletion; db_xref=PMID:20976105; date=20101124 ||| term=orthologous to S. cerevisiae YBR215W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Eukaryotes only; date=20101124 ||| term=species distribution, conserved in Vertebrates; date=20101124 ||| term=species distribution, conserved in Metazoa; date=20101124 ||| term=human UBN1 ortholog; db_xref=PMID:20976105; date=20101124 ||| term=name description, HIRA interacting protein; db_xref=PMID:20976105; date=20101124" ; GO "GO:0000790; nuclear chromatin
GO:0006336; DNA replication-independent nucleosome assembly
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; primary_name "hip4" ; product "histone promoter control protein Hip4" ;
chromosome2 GeneDB mRNA 2003697 2005296 . + . mRNA SPBP23A10.05 ; systematic_id "SPBP23A10.05" ; colour "2" ; gene "ssr4 ||| SPBP23A10.05" ; Alias "ssr4" ; db_xref "SPD:21/21D09" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016514; SWI/SNF complex
GO:0016586; RSC complex
GO:0010551; regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Swi/Snf RSC; cv=name_description; date=20061009 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "ssr4" ; product "SWI/SNF and RSC complex subunit Ssr4" ;
chromosome2 GeneDB mRNA 2776282 2777112 . - . mRNA SPBC685.04c ; systematic_id "SPBC685.04c" ; colour "7" ; gene "aps2 ||| SPBC685.04c" ; Alias "aps2" ; db_xref "SPD:03/03F01" ; GO "GO:0030122; AP-2 adaptor complex
GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR058C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "aps2" ; product "AP-2 adaptor complex subunit Aps2 (predicted)" ;
chromosome2 GeneDB mRNA 2903103 2905881 . + . mRNA SPBP4H10.15 ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00630; ||| KEGG:MAP00720; ||| SPD:39/39A08" ; systematic_id "SPBP4H10.15" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, proteolytic cleavage; cv=pt_mod; date=20060825 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20060825 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; date=20060825 ||| term=orthologous to S. cerevisiae YJL200C (N-term); date=19700101 ||| term=orthologous to S. cerevisiae YJL096W (C-term); date=19700101" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0005739; mitochondrion
GO:0003994; aconitate hydratase activity
GO:0003735; structural constituent of ribosome
GO:0006101; citrate metabolism
GO:0006412; protein biosynthesis
GO:0006099; tricarboxylic acid cycle" ; gene "SPBP4H10.15" ; product "aconitate hydratase/mitochondrial ribosomal protein subunit L49, fusion protein (predicted)" ; EC_number "4.2.1.3" ;
chromosome2 GeneDB mRNA 1008712 1009991 . - . mRNA SPBC146.05c ; systematic_id "SPBC146.05c" ; colour "2" ; gene "cwf25 ||| SPBC146.05c" ; Alias "cwf25" ; db_xref "SPD:19/19A05" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL245C; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cwf25" ; product "complexed with Cdc5 protein Cwf25" ;
chromosome2 GeneDB mRNA 601273 602096 . + . mRNA SPBC839.04 ; systematic_id "SPBC839.04" ; colour "7" ; gene "rpl803 ||| rpl8-3 ||| rpk5-b ||| SPBC839.04 ||| rpkD4" ; Alias "rpl803" ; obsolete_name "SPBC24E9.04" ; db_xref "SPD:09/09D05" ; synonym "rpl8-3 ||| rpk5-b ||| rpkD4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR031C-A and YIL018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0019843; rRNA binding
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; primary_name "rpl803" ; product "60S ribosomal protein L8 (predicted)" ;
chromosome2 GeneDB mRNA 260381 262087 . - . mRNA SPBC800.05c ; systematic_id "SPBC800.05c" ; colour "2" ; gene "tub1 ||| atb2 ||| alp2 ||| SPBC800.05c ||| ban5" ; Alias "atb2" ; db_xref "SPD:32/32H06" ; synonym "tub1 ||| alp2 ||| ban5" ; GO "GO:0005874; microtubule
GO:0005525; GTP binding
GO:0046982; protein heterodimerization activity
GO:0005200; structural constituent of cytoskeleton
GO:0007163; establishment and/or maintenance of cell polarity
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0048311; mitochondrion distribution" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9658169; date=19700101 ||| term=phenotype, cell morphology, curved; qualifier=deletion; db_xref=PMID:8522609; date=20100731 ||| term=orthologous to S. cerevisiae YML085C and YML124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atb2" ; product "tubulin alpha 2" ;
chromosome2 GeneDB mRNA 1390183 1391222 . + . mRNA SPBC8D2.17 ; db_xref "SPD:32/32D07" ; systematic_id "SPBC8D2.17" ; colour "7" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0042125; protein amino acid galactosylation" ; gene "SPBC8D2.17" ; product "alpha-1,2-galactosyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB mRNA 4387838 4391192 . - . mRNA SPBC1289.04c ; systematic_id "SPBC1289.04c" ; colour "2" ; gene "pob1 ||| SPBC1289.04c" ; Alias "pob1" ; db_xref "SPD:33/33H12" ; GO "GO:0000920; cell separation during cytokinesis
GO:0051285; cell cortex of cell tip
GO:0031097; medial ring
GO:0008360; regulation of cell shape" ; controlled_curation "term=phenotype, inviable; cv=phenotype; db_xref=PMID:10436025; date=19700101 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15195092; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YBL085W and YER114C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, cell morphology, stubby cells; qualifier=ts; db_xref=PMID:10436025; date=20100826 ||| term=phenotype, cell morphology, lemon shaped; qualifier=ts; db_xref=PMID:10436025; date=20100826 ||| term=phenotype, cell morphology, swollen cells; qualifier=overexpression; db_xref=PMID:10436025; date=20100826" ; primary_name "pob1" ; product "Boi family protein" ;
chromosome2 GeneDB mRNA 3592319 3596935 . - . mRNA SPBC16D10.04c ; systematic_id "SPBC16D10.04c" ; colour "2" ; gene "dna2 ||| SPBC16D10.04c" ; Alias "dna2" ; db_xref "SPD:34/34B04" ; GO "GO:0000784; nuclear chromosome, telomeric region
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0017108; 5'-flap endonuclease activity
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0004527; exonuclease activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042162; telomeric DNA binding
GO:0006281; DNA repair
GO:0043137; DNA replication, removal of RNA primer
GO:0000084; S phase of mitotic cell cycle
GO:0000723; telomere maintenance
GO:0031860; telomeric 3' overhang formation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10880469; date=19700101 ||| term=orthologous to S. cerevisiae YHR164C; date=19700101 ||| term=misc, disruption of interaction between Cdc27 and Pcn1 makes Cdc24-Dna2 complex dispensible; db_xref=PMID:15576681; date=20070725 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10880469; date=20100708 ||| term=phenotype, mononucleate; qualifier=deletion; db_xref=PMID:10880469; date=20100708" ; primary_name "dna2" ; product "DNA replication endonuclease-helicase Dna2" ;
chromosome2 GeneDB mRNA 2612987 2615139 . - . mRNA SPBC25B2.09c ; systematic_id "SPBC25B2.09c" ; colour "7" ; gene "SPBC25B2.09c ||| rrs1" ; note "given primary name mrs1 because rrs1 is used for SPBC29A3.16" ; Alias "mrs1" ; db_xref "KEGG:MAP00330; ||| KEGG:MAP00970; ||| SPD:36/36H07" ; synonym "rrs1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR341C and YHR091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0004814; arginine-tRNA ligase activity
GO:0006420; arginyl-tRNA aminoacylation" ; primary_name "mrs1" ; product "mitochondrial and cytoplasmic arginine-tRNA ligase Rrs1/Mrs1 (predicted)" ; EC_number "6.1.1.19" ;
chromosome2 GeneDB mRNA 1695097 1697131 . + . mRNA SPBC19C2.10 ; db_xref "SPD:25/25H11" ; systematic_id "SPBC19C2.10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BAR domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100217 ||| term=human SH3GL1 ortholog; date=20100217" ; colour "10" ; gene "SPBC19C2.10" ; product "BAR adaptor protein" ;
chromosome2 GeneDB mRNA 2073274 2074742 . + . mRNA SPBC29A3.18 ; systematic_id "SPBC29A3.18" ; colour "7" ; gene "cyt1 ||| SPBC29A3.18" ; Alias "cyt1" ; db_xref "SPD:14/14H08" ; GO "GO:0045153; electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750; respiratory chain complex III (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cyt1" ; product "cytochrome c1 Cyt1 (predicted)" ;
chromosome2 GeneDB mRNA 3206712 3208717 . - . mRNA SPBC776.15c ; systematic_id "SPBC776.15c" ; colour "7" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00310; ||| SPD:49/49B05" ; Alias "kgd2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, lactic acidosis; date=20060920 ||| term=orthologous to S. cerevisiae YDR148C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, lipoylated; attribution=pers. comm. J. Stolz; date=20100304" ; GO "GO:0006103; 2-oxoglutarate metabolism
GO:0006099; tricarboxylic acid cycle
GO:0004149; dihydrolipoyllysine-residue succinyltransferase activity
GO:0009353; oxoglutarate dehydrogenase complex (sensu Eukaryota)
GO:0042645; mitochondrial nucleoid" ; primary_name "kgd2" ; product "dihydrolipoamide S-succinyltransferase, e2 component of oxoglutarate dehydrogenase complex Kdg2 (predicted)" ; EC_number "2.3.1.61" ;
chromosome2 GeneDB mRNA 367246 368403 . + . mRNA SPBC1271.03c ; db_xref "SPD:08/08H03" ; systematic_id "SPBC1271.03c" ; colour "7" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0005886; plasma membrane
GO:0006470; protein amino acid dephosphorylation
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YLL010C and YLR019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1271.03c" ; product "NLI interacting factor family phosphatase (predicted)" ;
chromosome2 GeneDB mRNA 3654470 3655279 . - . mRNA SPBP8B7.12c ; systematic_id "SPBP8B7.12c" ; colour "2" ; gene "fta3 ||| SPBP8B7.12c ||| sma3" ; Alias "fta3" ; db_xref "SPD:07/07F07" ; synonym "sma3" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106 ||| term=species distribution, conserved in Eukaryotes; date=20091106 ||| term=species distribution, conserved in Eukaryotes only ; date=20091106 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106" ; primary_name "fta3" ; product "CENP-H homolog Fta3" ;
chromosome2 GeneDB mRNA 2974828 2976543 . + . mRNA SPBC2D10.05 ; systematic_id "SPBC2D10.05" ; colour "2" ; gene "exg3 ||| SPBC2D10.05" ; Alias "exg3" ; db_xref "SPD:44/44F09" ; GO "GO:0004338; glucan 1,3-beta-glucosidase activity
GO:0046557; glucan endo-1,6-beta-glucosidase activity
GO:0005829; cytoplasm
GO:0070879; fungal-type cell wall beta-glucan metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR056W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "exg3" ; product "glucan 1,3-beta-glucosidase Exg3" ; EC_number "3.2.1.-" ;
chromosome2 GeneDB mRNA 4162069 4163824 . - . mRNA SPBC14F5.05c ; systematic_id "SPBC14F5.05c" ; colour "2" ; gene "sam1 ||| SPBC14F5.05c" ; Alias "sam1" ; db_xref "SPD:32/32E09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hypermethioninemia; date=20060922 ||| term=orthologous to S. cerevisiae YLR180W and YDR502C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006555; methionine metabolism
GO:0004478; methionine adenosyltransferase activity
GO:0005737; cytoplasm
GO:0005524; ATP binding" ; primary_name "sam1" ; product "S-adenosylmethionine synthetase" ; EC_number "2.5.1.6" ;
chromosome2 GeneDB mRNA 3537210 3538034 . - . mRNA SPBC1105.16c ; systematic_id "SPBC1105.16c" ; colour "7" ; gene "rpr2 ||| SPBC1105.16c" ; Alias "rpr2" ; db_xref "SPD:01/01G04" ; GO "GO:0008033; tRNA processing
GO:0005655; nucleolar ribonuclease P complex
GO:0004526; ribonuclease P activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpr2" ; product "RNase P subunit Rpr2 (predicted)" ;
chromosome2 GeneDB mRNA 4502692 4503664 . + . mRNA SPBPB2B2.18 ; db_xref "SPD:50/50E03" ; systematic_id "SPBPB2B2.18" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBPB2B2.18" ; product "sequence orphan" ; note "There is a region which is duplicated in PB2B2 which is represented by the ORF SPBPB2B2.18 although the similarity is not very high...the predicition looks odd. The exon structure is not typical. There is also a region which is duplicated at the DNA level in c750 which is not incorporated into the prediction." ;
chromosome2 GeneDB mRNA 1570204 1571067 . - . mRNA SPBC27.06c ; systematic_id "SPBC27.06c" ; colour "10" ; gene "mgr2 ||| SPBC27.06c" ; Alias "mgr2" ; db_xref "SPD:03/03B05" ; GO "GO:0005739; mitochondrion
GO:0016020; membrane
GO:0031966; mitochondrial membrane" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL098C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mgr2" ; product "mitochondrial membrane protein Mgr2 (predicted)" ;
chromosome2 GeneDB mRNA 2458930 2461799 . - . mRNA SPBC12C2.08 ; systematic_id "SPBC12C2.08" ; colour "2" ; gene "SPBC12C2.08 ||| dnm1" ; Alias "dnm1" ; db_xref "SPD:28/28H09" ; GO "GO:0005741; mitochondrial outer membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0003774; motor activity
GO:0006944; membrane fusion
GO:0000266; mitochondrial fission
GO:0000266; mitochondrial fission
GO:0033955; mitochondrion DNA inheritance
GO:0000001; mitochondrion inheritance
GO:0034643; mitochondrion localization, microtubule-mediated
GO:0007005; mitochondrion organization
GO:0007031; peroxisome organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, mitochondria fused; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=phenotype, mitochondrial nucleoid reduced number; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=phenotype, mitochondrial nucleoid enlarged; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=phenotype, respiration defective; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=phenotype, resistance to microtubule depolymerizing drugs; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=phenotype, growth defects, growth inhibition in galactose-based medium; qualifier=deletion; cv=phenotype; db_xref=PMID:19373772; date=20090421 ||| term=orthologous to S. cerevisiae YLL001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "dnm1" ; product "dynamin Dnm1" ;
chromosome2 GeneDB mRNA 1506412 1509437 . - . mRNA SPBC1215.02c ; systematic_id "SPBC1215.02c" ; colour "7" ; gene "SPBC1215.02c ||| arm1 ||| mdm20" ; Alias "naa25" ; db_xref "SPD:47/47F05" ; synonym "arm1 ||| mdm20" ; GO "GO:0017196; N-terminal peptidyl-methionine acetylation
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0000001; mitochondrion inheritance
GO:0005622; intracellular
GO:0007005; mitochondrion organization and biogenesis
GO:0003779; actin binding
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0031416; NatB complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YOL076W; date=19700101 ||| term=phenotype, resistance to amorilide; cv=phenotype; date=20070704 ||| term=target is tropomyosin; qualifier=predicted; date=20070704 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, septation defects; qualifier=deletion; attribution=pers. comm. P. Young; cv=phenotype; date=20100317 ||| term=phenotype, cytoskeletal defects; qualifier=deletion; attribution=pers. comm. P. Young; cv=phenotype; date=20100317 ||| term=phenotype, endocytosis defects; qualifier=deletion; attribution=pers. comm. P. Young; cv=phenotype; date=20100317 ||| term=phenotype, pleiotropic effects; qualifier=deletion; attribution=pers. comm. P. Young; cv=phenotype; date=20100317 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622 ||| term=human c12orf30 ortholog; date=20110113" ; primary_name "naa25" ; product "NatB N-acetyltransferase complex non catalytic subunit Naa25 (predicted)" ;
chromosome2 GeneDB mRNA 2426542 2431709 . + . mRNA SPBC21D10.09c ; db_xref "SPD:31/31A12" ; systematic_id "SPBC21D10.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YMR247C; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=20080528 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006342; chromatin silencing
GO:0016567; protein ubiquitination" ; gene "SPBC21D10.09c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB mRNA 2660139 2660992 . - . mRNA SPBC3E7.02c ; systematic_id "SPBC3E7.02c" ; colour "2" ; gene "hsp16 ||| SPBC3E7.02c" ; Alias "hsp16" ; db_xref "SPD:31/31D08" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0034605; cellular response to heat
GO:0009267; cellular response to starvation
GO:0005515; protein binding
GO:0031990; mRNA export from nucleus during heat stress
GO:0051082; unfolded protein binding
GO:0034620; cellular response to unfolded protein
GO:0061077; chaperone-mediated protein folding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during nucleotide depletion; db_xref=PMID:11452028; cv=gene_ex; date=20060106 ||| term=misc functional group, chaperone; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YBR072W and YDR171W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "hsp16" ; product "heat shock protein Hsp16" ;
chromosome2 GeneDB mRNA 1944937 1946392 . - . mRNA SPBC16E9.14c ; systematic_id "SPBC16E9.14c" ; colour "2" ; gene "SPBC16E9.14c ||| zrg17" ; Alias "zrg17" ; db_xref "SPD:18/18C12" ; GO "GO:0000139; Golgi membrane
GO:0006829; zinc ion transport
GO:0005385; zinc ion transmembrane transporter activity
GO:0006882; cellular zinc ion homeostasis
GO:0005515; protein binding
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNR039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "zrg17" ; product "cation diffusion family zinc membrane transporter Zrg17" ;
chromosome2 GeneDB mRNA 4145285 4146278 . - . mRNA SPBC1861.08c ; systematic_id "SPBC1861.08c" ; colour "7" ; gene "SPBC1861.08c" ; note "splice donor sequence is incorrect (not GT) homology shows that position of intron is correct but cosmid sequence has good coverage in this region. This region will be checked by sequencing PCR products primed from genomic DNA" ; Alias "lea1" ; db_xref "SPD:09/09F03" ; GO "GO:0005737; cytoplasm
GO:0005686; snRNP U2
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL213W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SNRPA1 homolog; date=20090922" ; primary_name "lea1" ; product "U2 snRNP-associated protein Lea1 (predicted)" ; reserved_name "lea1" ;
chromosome2 GeneDB mRNA 3565808 3567455 . - . mRNA SPBC887.13c ; db_xref "SPD:44/44C12" ; systematic_id "SPBC887.13c" ; colour "7" ; GO "GO:0004315; 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0005739; mitochondrion
GO:0006633; fatty acid biosynthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC887.13c" ; product "3-oxoacyl-[acyl-carrier-protein]-synthase condensing enzyme (predicted)" ;
chromosome2 GeneDB mRNA 717888 718915 . + . mRNA SPBC119.03 ; db_xref "SPD:10/10B04" ; systematic_id "SPBC119.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human COMT ortholog; date=19700101" ; colour "10" ; gene "SPBC119.03" ; product "human COMT homolog 1" ;
chromosome2 GeneDB mRNA 945102 948163 . - . mRNA SPBC646.12c ; systematic_id "SPBC646.12c" ; colour "2" ; gene "gap1 ||| src1 ||| sar1 ||| SPBC646.12c" ; Alias "gap1" ; db_xref "SPD:39/39F10" ; synonym "src1 ||| sar1" ; GO "GO:0005099; Ras GTPase activator activity
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0007265; Ras protein signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1883874; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Suppressor of Activated Ras1; date=20101207 ||| term=name description, GTPase Activating Protein; date=20101207" ; primary_name "gap1" ; product "GTPase activating protein Gap1" ;
chromosome2 GeneDB mRNA 3880318 3883046 . - . mRNA SPBC211.04c ; systematic_id "SPBC211.04c" ; colour "2" ; gene "mcm6 ||| mis5 ||| SPBC211.04c" ; Alias "mcm6" ; db_xref "SPD:40/40H11" ; synonym "mis5" ; GO "GO:0006270; DNA replication initiation
GO:0042555; MCM complex
GO:0000084; S phase of mitotic cell cycle
GO:0005656; pre-replicative complex
GO:0000790; nuclear chromatin
GO:0006271; DNA strand elongation during DNA replication
GO:0004003; ATP-dependent DNA helicase activity
GO:0031261; DNA replication preinitiation complex
GO:0007346; regulation of mitotic cell cycle
GO:0031390; nuclear replication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7865880; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:7865880; date=20100708 ||| term=orthologous to S. cerevisiae YGL201C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mcm6" ; product "MCM complex subunit Mcm6" ;
chromosome2 GeneDB mRNA 2138338 2139660 . + . mRNA SPBC1711.03 ; systematic_id "SPBC1711.03" ; colour "7" ; gene "SPBC1711.03 ||| aim27" ; Alias "aim27" ; db_xref "SPD:17/17E09" ; synonym "emc3" ; GO "GO:0034975; protein folding in the endoplasmic reticulum
GO:0030176; integral to endoplasmic reticulum membrane
GO:0072546; ER membrane protein complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL207W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=human TMEM111 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "aim27" ; product "ER membrane protein complex subunit Aim27 (predicted)" ;
chromosome2 GeneDB mRNA 578723 579987 . + . mRNA SPBC354.12 ; systematic_id "SPBC354.12" ; colour "2" ; gene "gpd3 ||| SPBC354.12" ; Alias "gpd3" ; db_xref "SPD:40/40C03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL052W and YGR192C and YJR009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006096; glycolysis
GO:0004365; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity" ; primary_name "gpd3" ; product "glyceraldehyde 3-phosphate dehydrogenase Gpd3" ; EC_number "1.2.1.12" ;
chromosome2 GeneDB mRNA 558335 560368 . - . mRNA SPBC354.07c ; db_xref "SPD:36/36G06" ; systematic_id "SPBC354.07c" ; colour "7" ; GO "GO:0008142; oxysterol binding
GO:0006696; ergosterol biosynthetic process" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR001W and YKR003W and YOR237W and YPL145C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110" ; gene "SPBC354.07c" ; product "oxysterol binding protein (predicted)" ;
chromosome2 GeneDB mRNA 809447 810713 . - . mRNA SPBC530.09c ; db_xref "SPD:14/14A01" ; systematic_id "SPBC530.09c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005770; late endosome
GO:0007034; vacuolar transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR079W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC530.09c" ; product "cation dependent mannose-6-phosphate cargo receptor (predicted)" ;
chromosome2 GeneDB mRNA 1404001 1405704 . - . mRNA SPBC17A3.03c ; systematic_id "SPBC17A3.03c" ; colour "7" ; gene "SPBC17A3.03c" ; obsolete_name "pi043" ; db_xref "SPD:40/40C05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL032W and YNL099C and YNL056W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0006470; protein amino acid dephosphorylation
GO:0004725; protein tyrosine phosphatase activity" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome2 GeneDB mRNA 1468511 1470332 . + . mRNA SPBC32H8.09 ; obsolete_name "pi015 ||| SPACTOKYO_453.21c" ; db_xref "SPD:50/50H03" ; systematic_id "SPBC32H8.09" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC32H8.09" ; product "WD repeat protein, human WDR8 family" ;
chromosome2 GeneDB mRNA 4189836 4191380 . + . mRNA SPBC3F6.03 ; systematic_id "SPBC3F6.03" ; colour "2" ; gene "trr1 ||| caf4 ||| SPBC3F6.03" ; Alias "trr1" ; db_xref "SPD:41/41H04" ; synonym "caf4" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005515; protein binding
GO:0004791; thioredoxin-disulfide reductase activity
GO:0034599; cellular response to oxidative stress
GO:0019430; removal of superoxide radicals
GO:0071313; cellular response to caffeine" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR353W and YHR106W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "trr1" ; product "thioredoxin reductase Trr1" ; EC_number "1.8.1.9" ;
chromosome2 GeneDB mRNA 1571423 1572963 . - . mRNA SPBC27.08c ; systematic_id "SPBC27.08c" ; colour "2" ; gene "sua1 ||| SPBC27.08c ||| SPBC28F2.01c" ; note "does not have adenylylsulfate kinase activity" ; Alias "sua1" ; obsolete_name "met3 ||| asp1" ; db_xref "SPD:23/23G03" ; synonym "SPBC28F2.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0004781; sulfate adenylyltransferase (ATP) activity
GO:0004781; sulfate adenylyltransferase (ATP) activity
GO:0019344; cysteine biosynthetic process
GO:0009086; methionine biosynthetic process
GO:0000103; sulfate assimilation" ; primary_name "sua1" ; product "sulfate adenylyltransferase" ; EC_number "2.7.7.4" ;
chromosome2 GeneDB mRNA 2106331 2108971 . - . mRNA SPBC23G7.06c ; db_xref "SPD:28/28D07" ; systematic_id "SPBC23G7.06c" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR091C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=pleckstrin homology domain; qualifier=inferred from context; date=19700101 ||| term=human TEX2 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202" ; gene "SPBC23G7.06c" ; product "conserved eukaryotic protein" ;
chromosome2 GeneDB mRNA 3056734 3058589 . - . mRNA SPBC13E7.10c ; systematic_id "SPBC13E7.10c" ; colour "2" ; gene "brf1 ||| SPBC13E7.10c ||| SPBC30D10.20" ; Alias "brf1" ; db_xref "SPD:40/40G02" ; synonym "SPBC30D10.20" ; GO "GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0000126; transcription factor TFIIIB complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR246C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "brf1" ; product "transcription factor TFIIIB complex subunit Brf1" ;
chromosome2 GeneDB mRNA 2612209 2612586 . + . mRNA SPBC25B2.08 ; db_xref "SPD:02/02G05" ; systematic_id "SPBC25B2.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC25B2.08" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4238294 4239336 . - . mRNA SPBC16G5.14c ; systematic_id "SPBC16G5.14c" ; colour "7" ; gene "rps3 ||| SPBC16G5.14c" ; Alias "rps3" ; db_xref "SPD:40/40C01" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu the Eukaryota research community)
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps3" ; product "40S ribosomal protein S3 (predicted)" ;
chromosome2 GeneDB mRNA 2132586 2132714 . - . mRNA SPBC1711.01c ; systematic_id "SPBC1711.01c" ; colour "2" ; gene "matmi_1 ||| matmi ||| SPBC1711.01c" ; Alias "mat1-m" ; db_xref "SPD:31/31B12" ; synonym "matmi ||| matmi_1" ; GO "GO:0007531; mating type determination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=mating-type m-specific polypeptide mi; date=20090429" ; primary_name "mat1-m" ; product "mating-type m-specific polypeptide mi 1" ;
chromosome2 GeneDB mRNA 541265 543081 . + . mRNA SPBC649.05 ; systematic_id "SPBC649.05" ; colour "2" ; gene "cut12 ||| stf1 ||| SPBC649.05" ; Alias "cut12" ; db_xref "SPD:35/35C05" ; synonym "stf1" ; GO "GO:0005816; spindle pole body
; protein binding
GO:0090307; spindle assembly involved in mitosis
GO:0007094; mitotic spindle checkpoint
GO:0007088; regulation of mitosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=target is Plo1; qualifier=activates; db_xref=PMID:12815070; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, cut; cv=phenotype; date=20091118" ; primary_name "cut12" ; product "spindle pole body protein Cut12" ;
chromosome2 GeneDB mRNA 3574921 3575250 . + . mRNA SPBC887.16 ; db_xref "SPD:01/01H04" ; systematic_id "SPBC887.16" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPBC887.16" ; product "dubious" ;
chromosome2 GeneDB mRNA 1875770 1876761 . - . mRNA SPBC3H7.04 ; db_xref "SPD:07/07F05" ; systematic_id "SPBC3H7.04" ; colour "7" ; GO "GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR101W and YDR347W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC3H7.04" ; product "mitochondrial ribosomal protein subunit S26 (predicted)" ;
chromosome2 GeneDB mRNA 3677681 3679600 . + . mRNA SPBP8B7.21 ; systematic_id "SPBP8B7.21" ; colour "2" ; gene "SPBP8B7.21 ||| ubp3" ; db_xref "SPD:25/25D05" ; Alias "ubp3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER151C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human USP10 ortholog; date=20101001" ; GO "GO:0060628; regulation of ER to Golgi vesicle- mediated transport
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005737; cytoplasm
GO:0005515; protein binding" ; primary_name "ubp3" ; product "ubiquitin C-terminal hydrolase Ubp3" ;
chromosome2 GeneDB mRNA 3466570 3467529 . - . mRNA SPBC2G2.17c ; db_xref "SPD:13/13F02" ; systematic_id "SPBC2G2.17c" ; colour "10" ; GO "GO:0008422; beta-glucosidase activity
GO:0009277; cell wall (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL123W and YKR042W and YJL116C and YNL066W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC2G2.17c" ; product "beta-glucosidase Psu2 (predicted)" ;
chromosome2 GeneDB mRNA 3187516 3191091 . - . mRNA SPBC776.08c ; db_xref "SPD:48/48B12" ; systematic_id "SPBC776.08c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR090W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC776.08c" ; product "Nrap (predicted)" ;
chromosome2 GeneDB mRNA 148071 150437 . + . mRNA SPBC1683.05 ; db_xref "SPD:35/35B06" ; systematic_id "SPBC1683.05" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR192C and YLR237W and YOR071C; date=19700101 ||| term=complementation, does not functionally complement S. cerevisiae thi7; attribution=J. Stolz; date=20100127 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBC1683.05" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 4310239 4311772 . - . mRNA SPBC543.06c ; systematic_id "SPBC543.06c" ; colour "7" ; gene "dbp8 ||| SPBC543.06c" ; Alias "dbp8" ; db_xref "SPD:33/33B02" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing
GO:0005730; nucleolus
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YHR169W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dbp8" ; product "ATP-dependent RNA helicase Dbp8 (predicted)" ;
chromosome2 GeneDB mRNA 892168 894257 . + . mRNA SPBC713.12 ; systematic_id "SPBC713.12" ; colour "7" ; gene "erg1 ||| SPBC713.12" ; Alias "erg1" ; db_xref "SPD:50/50F06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR175C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006696; ergosterol biosynthesis
GO:0004506; squalene monooxygenase activity
GO:0005789; endoplasmic reticulum membrane" ; primary_name "erg1" ; product "squalene monooxygenase Erg1 (predicted)" ; EC_number "1.14.99.7" ; reserved_name "erg1" ;
chromosome2 GeneDB mRNA 1987033 1988408 . - . mRNA SPBC1A4.06c ; systematic_id "SPBC1A4.06c" ; colour "7" ; gene "SPBC1A4.06c" ; Alias "tam41" ; db_xref "SPD:44/44B06" ; GO "GO:0005739; mitochondrion
GO:0030150; protein import into mitochondrial matrix
GO:0031314; extrinsic to mitochondrial inner membrane
GO:0005759; mitochondrial matrix
GO:0032049; cardiolipin biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR046W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090202 ||| term=warning, frameshifted; db_xref=PMID:16823372; cv=warning; date=20090202" ; primary_name "tam41" ; product "mitochondrial matrix protein import protein Tam41 (predicted)" ; reserved_name "tam41" ;
chromosome2 GeneDB mRNA 2401736 2403394 . + . mRNA SPBP18G5.02 ; db_xref "KEGG:MAP00561; ||| SPD:49/49A11" ; systematic_id "SPBP18G5.02" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006655; phosphatidylglycerol biosynthesis
GO:0046168; glycerol-3-phosphate catabolism
GO:0008444; CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0005739; mitochondrion" ; gene "SPBP18G5.02" ; product "CDP-diacylglycerol-glycerol-3-phosphate3- phosphat idyltransferase (predicted)" ; EC_number "2.7.8.5" ;
chromosome2 GeneDB mRNA 2196584 2197681 . - . mRNA SPBC17G9.13c ; db_xref "SPD:13/13D12" ; systematic_id "SPBC17G9.13c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20090418 ||| term=species distribution, conserved in Fungi only; date=20090418 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090418" ; colour "10" ; gene "SPBC17G9.13c" ; product "conserved fungal mitochondrial protein" ;
chromosome2 GeneDB mRNA 3839595 3842759 . + . mRNA SPBC23E6.02 ; db_xref "SPD:47/47H05" ; systematic_id "SPBC23E6.02" ; colour "7" ; GO "GO:0016585; chromatin remodeling complex
GO:0006338; chromatin remodeling
GO:0004003; ATP-dependent DNA helicase activity
GO:0006281; DNA repair
GO:0000790; nuclear chromatin
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC23E6.02" ; product "ATP-dependent DNA helicase (predicted)" ;
chromosome2 GeneDB mRNA 2862086 2862748 . - . mRNA SPAP19A11.05c ; systematic_id "SPAP19A11.05c" ; colour "7" ; gene "mrp7 ||| SPAP19A11.05c ||| SPBP19A11.05c" ; Alias "mrp7" ; db_xref "SPD:41/41C04" ; synonym "SPBP19A11.05c" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit
GO:0000048; peptidyltransferase activity
GO:0000048; peptidyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, systematic ID does not reflect chromosome; cv=warning; date=20100127" ; primary_name "mrp7" ; product "mitochondrial ribosomal protein subunit L27 (predicted)" ;
chromosome2 GeneDB mRNA 1697510 1699219 . - . mRNA SPBC19C2.11c ; systematic_id "SPBC19C2.11c" ; colour "7" ; db_xref "SPD:21/21B01" ; Alias "mdm34" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL219C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0032865; Mdm10/Mdm12/Mmm1 complex
GO:0005737; cytoplasm
GO:0005741; mitochondrial outer membrane
GO:0007005; mitochondrion organization
GO:0015914; phospholipid transport" ; primary_name "mdm34" ; product "mitochondrial outer membrane protein Mdm34 (predicted)" ;
chromosome2 GeneDB mRNA 1752456 1755480 . + . mRNA SPBC1D7.02c ; systematic_id "SPBC1D7.02c" ; colour "2" ; gene "scr1 ||| SPBC1D7.02c" ; Alias "scr1" ; db_xref "SPD:39/39E12" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005634; nucleus" ; controlled_curation "term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YGL035C and YGL209W and YER028C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "scr1" ; product "transcription factor Scr1" ;
chromosome2 GeneDB mRNA 2387093 2389305 . + . mRNA SPBC36B7.03 ; systematic_id "SPBC36B7.03" ; colour "2" ; db_xref "SPD:33/33E11" ; Alias "sec63" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR254C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257547; cv=pt_mod; date=20100125" ; GO "GO:0030544; Hsp70 protein binding
GO:0006620; posttranslational protein targeting to membrane
GO:0005789; endoplasmic reticulum membrane
GO:0006614; SRP-dependent cotranslational protein targeting to membrane
GO:0031207; Sec62/Sec63 complex
GO:0005938; cell cortex
GO:0005635; nuclear envelope" ; primary_name "sec63" ; product "ER protein translocation subcomplex subunit Sec63 (predicted)" ;
chromosome2 GeneDB mRNA 2466031 2468620 . + . mRNA SPBC12C2.05c ; systematic_id "SPBC12C2.05c" ; colour "7" ; gene "SPBC12C2.05c ||| bzz1" ; Alias "bzz1" ; db_xref "SPD:46/46G10" ; GO "GO:0030479; actin cortical patch
GO:0005737; cytoplasm
GO:0019992; diacylglycerol binding
GO:0007015; actin filament organization
GO:0006897; endocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C1 domain; date=19700101 ||| term=orthologous to S. cerevisiae YHR114W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bzz1" ; product "diacylglycerol binding protein Bzz1 (predicted)" ;
chromosome2 GeneDB mRNA 3812462 3813268 . - . mRNA SPBC21C3.10c ; db_xref "SPD:10/10C06" ; systematic_id "SPBC21C3.10c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR153W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0008703; 5-amino-6-(5- phosphoribosylamino)uracil reductase activity
GO:0009231; riboflavin biosynthesis" ; gene "SPBC21C3.10c" ; product "5-amino-6-(5-phosphoribosylamino) uracil reductase (predicted)" ; EC_number "1.1.1.193" ;
chromosome2 GeneDB mRNA 3518343 3520104 . - . mRNA SPBC1105.07c ; db_xref "SPD:44/44H07" ; systematic_id "SPBC1105.07c" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006406; mRNA export from nucleus
GO:0005643; nuclear pore
GO:0003690; double-stranded DNA binding
GO:0003723; RNA binding
GO:0000346; transcription export complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL072W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1105.07c" ; product "nuclear pore associated protein Thp1-Sac3 complex subunit (predicted)" ;
chromosome2 GeneDB mRNA 969008 970048 . - . mRNA SPBP35G2.04c ; db_xref "SPD:15/15E04" ; systematic_id "SPBP35G2.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBP35G2.04c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1290530 1293435 . + . mRNA SPBC3D6.12 ; db_xref "SPD:39/39B03" ; systematic_id "SPBC3D6.12" ; colour "7" ; GO "GO:0030515; snoRNA binding
GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR129W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC3D6.12" ; product "U3 snoRNA associted protein Dip2 (predicted)" ;
chromosome2 GeneDB mRNA 1691405 1694652 . + . mRNA SPBC19C2.09 ; systematic_id "SPBC19C2.09" ; colour "2" ; gene "sre1 ||| SPBC19C2.09" ; Alias "sre1" ; db_xref "SPD:39/39A03" ; GO "GO:0032936; SREBP-SCAP complex
GO:0071458; integral to endoplasmic reticulum membrane, cytosolic side
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0010629; negative regulation of gene expression
GO:0006800; oxygen and reactive oxygen species metabolic process
GO:0070452; positive regulation of ergosterol biosynthetic process
GO:0070455; positive regulation of heme biosynthetic process
GO:0071073; positive regulation of phospholipid biosynthetic process
GO:0071073; positive regulation of phospholipid biosynthetic process
GO:0010630; regulation of transcription, start site selection
GO:0071456; cellular response to hypoxia
GO:0006994; sterol depletion response, SREBP target gene transcriptional activation
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15797383; date=20070206 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060413 ||| term=modification, proteolytic cleavage; cv=pt_mod; db_xref=PMID:15797383; evidence=IDA; date=20070206 ||| term=gene expression, transcriptionally activates genes required for anaerobic growth under oxygen-limiting conditions; db_xref=PMID:16537923; cv=gene_ex; date=20060413 ||| term=DNA binding specificity, binds SRE 5'-[A/T]TCAC[A/C]CAT-3'; cv=gene_ex; db_xref=PMID:16537923; date=20060413 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=misc functional group, membrane- tethered transcription factor; db_xref=PMID:11790253; evidence=ISS; cv=m_f_g; date=20060413 ||| term=misc, autoregulation; date=20080429 ||| term=misc, stability regulated by oxygen; db_xref=PMID:18418381; date=20080430 ||| term=target of proteasome; db_xref=PMID:18418381; date=20080430 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16537923; date=20100302 ||| term=target of proteasome; db_xref=PMID:19520858; date=20100308 ||| term=target of ERAD pathway; db_xref=PMID:19520858; date=20100308" ; primary_name "sre1" ; product "sterol regulatory element binding protein, transcription factor Sre1" ;
chromosome2 GeneDB mRNA 430551 431780 . - . mRNA SPBC582.07c ; systematic_id "SPBC582.07c" ; colour "2" ; gene "rpn7 ||| SPBC582.07c" ; Alias "rpn7" ; db_xref "SPD:19/19E12" ; GO "GO:0031595; nuclear proteasome complex
GO:0000502; proteasome complex (sensu Eukaryota)
GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0043248; proteasome assembly
GO:0031144; proteasome localization
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17761670; date=20070903 ||| term=orthologous to S. cerevisiae YPR108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpn7" ; product "19S proteasome regulatory subunit Rpn7" ;
chromosome2 GeneDB mRNA 4393665 4395436 . - . mRNA SPBC1289.06c ; db_xref "SPD:24/24A11" ; systematic_id "SPBC1289.06c" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC1289.06c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4079071 4081220 . + . mRNA SPBC1347.10 ; systematic_id "SPBC1347.10" ; colour "2" ; gene "cdc23 ||| mcm10 ||| SPBC1347.10" ; Alias "cdc23" ; db_xref "SPD:33/33D07" ; synonym "mcm10" ; GO "GO:0000790; nuclear chromatin
GO:0043596; replication fork (sensu Eukaryota)
GO:0003896; DNA primase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003697; single-stranded DNA binding
; DNA replication initiation
GO:0006271; DNA strand elongation
GO:0005515; protein binding
GO:0007090; regulation of S-phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9745018; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:6943408; date=20100705 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=OB fold; date=19700101 ||| term=orthologous to S. cerevisiae YIL150C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cdc23" ; product "MCM-associated protein Mcm10" ;
chromosome2 GeneDB mRNA 2651604 2654238 . + . mRNA SPBC6B1.10 ; systematic_id "SPBC6B1.10" ; colour "2" ; gene "prp17 ||| SPBC6B1.10" ; Alias "prp17" ; db_xref "SPD:36/36G09" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR364C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "prp17" ; product "splicing factor Prp17" ;
chromosome2 GeneDB mRNA 641313 643622 . + . mRNA SPBC947.15c ; db_xref "SPD:34/34G02" ; systematic_id "SPBC947.15c" ; colour "7" ; GO "GO:0006116; NADH oxidation
GO:0003954; NADH dehydrogenase activity
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR145C and YDL085W and YML120C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; gene "SPBC947.15c" ; product "mitochondrial NADH dehydrogenase (predicted)" ;
chromosome2 GeneDB mRNA 1755901 1757240 . - . mRNA SPBC1D7.01 ; db_xref "SPD:42/42D01" ; systematic_id "SPBC1D7.01" ; colour "7" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL179W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1D7.01" ; product "prefoldin subunit 1 (predicted)" ;
chromosome2 GeneDB mRNA 1010419 1013113 . - . mRNA SPBC146.06c ; db_xref "SPD:27/27H10" ; systematic_id "SPBC146.06c" ; colour "10" ; GO "GO:0004518; nuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC146.06c" ; product "VRR-NUC nuclease associated domain, human MTMR15 homolog" ;
chromosome2 GeneDB mRNA 4004858 4006201 . + . mRNA SPBC3B9.10 ; systematic_id "SPBC3B9.10" ; colour "7" ; gene "vti1 ||| SPBC3B9.10" ; Alias "vti1" ; db_xref "SPD:16/16E08" ; GO "GO:0006891; intra-Golgi vesicle-mediated transport
GO:0048278; vesicle docking
GO:0030173; integral to Golgi membrane
GO:0006896; Golgi to vacuole transport
GO:0045324; late endosome to vacuole transport
GO:0005484; SNAP receptor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR197C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vti1" ; product "SNARE Vti1 (predicted)" ;
chromosome2 GeneDB mRNA 3301304 3302081 . + . mRNA SPBC20F10.09 ; systematic_id "SPBC20F10.09" ; colour "7" ; gene "lsm5 ||| SPBC20F10.09" ; Alias "lsm5" ; db_xref "SPD:03/03G06" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005688; snRNP U6
GO:0003723; RNA binding
GO:0006402; mRNA catabolism
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER146W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsm5" ; product "U6 snRNP-associated protein Lsm5 (predicted)" ;
chromosome2 GeneDB mRNA 2726357 2727959 . - . mRNA SPBC4F6.18c ; systematic_id "SPBC4F6.18c" ; colour "2" ; gene "arf1 ||| SPBC4F6.18c" ; Alias "arf1" ; db_xref "SPD:39/39H12" ; GO "GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL137W and YDL192W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arf1" ; product "ADP-ribosylation factor, Arf family Arf1" ;
chromosome2 GeneDB mRNA 3238171 3241471 . + . mRNA SPBC19F8.05 ; db_xref "SPD:42/42G04" ; systematic_id "SPBC19F8.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC19F8.05" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1846434 1854538 . - . mRNA SPBC28E12.06c ; systematic_id "SPBC28E12.06c" ; colour "7" ; gene "SPBC28E12.06c ||| SPBC3H7.16 ||| lvs1" ; Alias "lvs1" ; db_xref "SPD:34/34D02" ; synonym "SPBC3H7.16" ; GO "GO:0005737; cytoplasm
GO:0000324; vacuole
GO:0035091; phosphoinositide binding
GO:0009268; response to pH
GO:0007034; vacuolar transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=orthologous to S. cerevisiae YCR032W; date=19700101 ||| term=disease associated, Chediak- Higashi syndrome; date=19700101 ||| term=disease associated, neurological disorders; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human LYST1 ortholog; date=20100222" ; primary_name "lvs1" ; product "beige protein homolog (predicted)" ; reserved_name "lvs1" ;
chromosome2 GeneDB mRNA 4173944 4175482 . - . mRNA SPBC14F5.09c ; systematic_id "SPBC14F5.09c" ; colour "2" ; gene "ade8 ||| SPBC14F5.09c" ; Alias "ade8" ; db_xref "SPD:40/40E09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, adenylosuccinase deficiency; date=20060920 ||| term=orthologous to S. cerevisiae YLR359W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006189; 'de novo' IMP biosynthesis
GO:0004018; adenylosuccinate lyase activity" ; primary_name "ade8" ; product "adenylosuccinate lyase Ade8" ; EC_number "4.3.2.2" ;
chromosome2 GeneDB mRNA 1284338 1285133 . - . mRNA SPBC3D6.08c ; systematic_id "SPBC3D6.08c" ; colour "7" ; gene "SPBC3D6.08c ||| lsm1" ; Alias "lsm1" ; db_xref "SPD:06/06E10" ; GO "GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0003723; RNA binding
GO:0006364; rRNA processing
GO:0000290; deadenylation-dependent decapping
GO:0005845; mRNA cap complex
GO:0000932; cytoplasmic mRNA processing body
GO:0000339; RNA cap binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL124C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsm1" ; product "mRNA decapping complex subunit (predicted)" ;
chromosome2 GeneDB mRNA 1724847 1726443 . + . mRNA SPBC2F12.08c ; systematic_id "SPBC2F12.08c" ; colour "2" ; gene "ceg1 ||| pce1 ||| SPBC2F12.08c" ; Alias "ceg1" ; db_xref "SPD:32/32F06" ; synonym "pce1" ; GO "GO:0004484; mRNA guanylyltransferase activity
GO:0006370; mRNA capping
GO:0005634; nucleus
GO:0005515; protein binding
GO:0031533; mRNA capping enzyme complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL130W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ceg1" ; product "mRNA guanylyltransferase Ceg1" ; EC_number "2.7.7.50" ;
chromosome2 GeneDB mRNA 2432142 2433025 . + . mRNA SPBC21D10.08c ; db_xref "SPD:43/43E05" ; systematic_id "SPBC21D10.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC21D10.08c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3983916 3987107 . + . mRNA SPBC32C12.02 ; systematic_id "SPBC32C12.02" ; colour "2" ; gene "ste11 ||| aff1 ||| stex ||| SPBC32C12.02" ; note "the equivalent function in S. cerevisiae is performed by STE12, but this is STE-like not HMG" ; Alias "ste11" ; db_xref "SPD:33/33A02" ; synonym "aff1 ||| stex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulates mei2; cv=gene_ex; date=20060818 ||| term=HMG box; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to P. Carinii STE11; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17032641; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=DNA binding specificity, binds TR-BOX 5'-TTCTTTGTT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=phenotype, sterile; db_xref=PMID:1934121; date=20101013 ||| term=name description, STErile; db_xref=PMID:1934121; date=20101013" ; GO "GO:0034064; Tor2-Mei2-Ste11 complex
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000747; conjugation with cellular fusion
GO:0051039; positive regulation of transcription, meiotic" ; primary_name "ste11" ; product "transcription factor Ste11" ;
chromosome2 GeneDB mRNA 3818298 3818974 . + . mRNA SPBC21C3.13 ; systematic_id "SPBC21C3.13" ; colour "7" ; gene "rps1901 ||| rps19-1 ||| SPBC21C3.13" ; Alias "rps1901" ; db_xref "SPD:31/31F02" ; synonym "rps19-1" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL121C and YNL302C; date=19700101 ||| term=disease associated, Diamond Blackfan Anemia; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1901" ; product "40S ribosomal protein S19 (predicted)" ;
chromosome2 GeneDB mRNA 4180866 4182410 . - . mRNA SPBC14F5.12c ; systematic_id "SPBC14F5.12c" ; colour "2" ; gene "cbh2 ||| SPBC14F5.12c" ; Alias "cbh2" ; db_xref "SPD:25/25A11" ; GO "GO:0000780; condensed nuclear chromosome, pericentric region
GO:0019237; centromeric DNA binding
GO:0046983; protein dimerization activity
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0016570; histone modification" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CENP-B box; date=19700101 ||| term=orthologous to S. cerevisiae YDR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cbh2" ; product "CENP-B homolog Cbh2" ;
chromosome2 GeneDB mRNA 2840850 2842722 . + . mRNA SPBC19C7.10 ; systematic_id "SPBC19C7.10" ; colour "2" ; gene "SPBC19C7.10" ; db_xref "SPD:45/45A08" ; Alias "bqt4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=APSES domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; qualifier=C_term; db_xref=PMID:19948484; date=20091127" ; GO "GO:0005635; nuclear envelope
GO:0005637; nuclear inner membrane
GO:0005515; protein binding
GO:0005515; protein binding
GO:0045141; meiotic telomere clustering" ; primary_name "bqt4" ; product "bouquet formation protein Bqt4" ;
chromosome2 GeneDB mRNA 2538194 2539953 . - . mRNA SPBC29A10.03c ; systematic_id "SPBC29A10.03c" ; colour "2" ; gene "SPBC365.19c ||| SPBC29A10.03c ||| rlf2" ; Alias "pcf1" ; db_xref "SPD:26/26B02" ; synonym "rlf2 ||| SPBC365.19c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CAF1p150 ortholog; db_xref=PMID:18761674; date=20090723 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18761674; date=20090723 ||| term=misc functional group, histone chaperone; db_xref=PMID:18761674; cv=m_f_g; date=20090723 ||| term=name description, Pombe CAF-1 First subunit; db_xref=PMID:18761674; date=20090723 ||| term=phenotype, sporulation defects; qualifier=deletion; db_xref=PMID:18761674; cv=phenotype; date=20090723" ; GO "GO:0033186; CAF-1 complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005634; nucleus
GO:0005515; protein binding
GO:0006335; DNA replication-dependent nucleosome assembly
GO:0030437; ascospore formation
GO:0070829; heterochromatin maintenance
GO:0035067; negative regulation of histone acetylation
GO:0090053; positive regulation of chromatin silencing at centromere
GO:0090055; positive regulation of chromatin silencing at silent mating-type cassette
GO:0051574; positive regulation of histone H3-K9 methylation
GO:0034504; protein localization in nucleus" ; primary_name "pcf1" ; product "CAF assembly factor (CAF-1) complex large subunit Pcf1" ;
chromosome2 GeneDB mRNA 19641 20383 . + . mRNA SPBC1348.07 ; systematic_id "SPBC1348.07" ; colour "12" ; gene "SPBC1348.07" ; obsolete_name "SPAC1348.07" ; db_xref "SPD:51/51B12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; GO "GO:0009897; external side of plasma membrane" ; product "S. pombe specific DUF999 protein family 6" ;
chromosome2 GeneDB mRNA 107759 108871 . + . mRNA SPBC359.02 ; systematic_id "SPBC359.02" ; colour "7" ; gene "alr2 ||| SPBC359.02" ; Alias "alr2" ; obsolete_name "alr1" ; db_xref "SPD:17/17E05" ; GO "GO:0008784; alanine racemase activity
GO:0006522; alanine metabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible horizontal transfer; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20100902" ; primary_name "alr2" ; product "alanine racemase Alr2 (predicted)" ;
chromosome2 GeneDB mRNA 2548690 2552490 . + . mRNA SPBC29A10.07 ; db_xref "SPD:51/51E12" ; systematic_id "SPBC29A10.07" ; colour "7" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR129W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC29A10.07" ; product "nucleoporin Pom152 (predicted)" ;
chromosome2 GeneDB mRNA 2313544 2314476 . + . mRNA SPBC12D12.09 ; systematic_id "SPBC12D12.09" ; colour "7" ; obsolete_name "SPAC12D12.09" ; Alias "rev7" ; GO "GO:0005739; mitochondrion
GO:0043596; nuclear replication fork
GO:0016035; zeta DNA polymerase complex
; DNA-directed DNA polymerase activity
GO:0006281; DNA repair
GO:0042276; error prone translesion synthesis
GO:0070987; error-free translesion synthesis
GO:0043504; mitochondrial DNA repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; attribution=pers. comm. Nicole Kosarek; date=20100408" ; primary_name "rev7" ; product "DNA polymerase zeta Rev7 (predicted)" ;
chromosome2 GeneDB mRNA 2174101 2176400 . - . mRNA SPBC17G9.04c ; systematic_id "SPBC17G9.04c" ; colour "2" ; gene "nup85 ||| SPBC17G9.04c" ; Alias "nup85" ; db_xref "SPD:46/46C11" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0005643; nuclear pore
GO:0031080; Nup107-160 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YJR042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nup85" ; product "nucleoporin Nup85" ;
chromosome2 GeneDB mRNA 3015483 3018005 . + . mRNA SPBC15D4.03 ; systematic_id "SPBC15D4.03" ; colour "2" ; gene "slm9 ||| SPBC15D4.03" ; Alias "slm9" ; db_xref "SPD:39/39F12" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0003714; transcription corepressor activity
GO:0034613; cellular protein localization
GO:0006995; cellular response to nitrogen starvation
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0000070; mitotic sister chromatid segregation
GO:0007070; negative regulation of transcription from RNA polymerase II promoter, mitotic
GO:0006336; DNA replication-independent nucleosome assembly
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10835386; date=20100708 ||| term=misc functional group, histone chaperone; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19620282; date=20091123 ||| term=target of proteasome; db_xref=PMID:20976105; evidence=IPI; date=20101124 ||| term=target of chaperonin-containing T-complex; evidence=IPI; db_xref=PMID:20976105; date=20101124" ; primary_name "slm9" ; product "hira protein Slm9" ;
chromosome2 GeneDB mRNA 3809059 3810816 . - . mRNA SPBC21C3.08c ; systematic_id "SPBC21C3.08c" ; colour "2" ; db_xref "SPD:22/22H11" ; Alias "car2" ; GO "GO:0004587; ornithine-oxo-acid transaminase activity
GO:0006527; arginine catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hyperornithinemia; date=20060920 ||| term=disease associated, gyrate atrophy of choroid and retina; date=20091016 ||| term=orthologous to S. cerevisiae YLR438W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, CAtabolism of aRginine, after cerevisiae; cv=name_description; date=20091016 ||| term=experimental tools, deletion solves arginine-conversion problem; db_xref=PMID:20460254; date=20100601" ; primary_name "car2" ; product "ornithine transaminase Car2" ; EC_number "2.6.1.13" ;
chromosome2 GeneDB mRNA 2505299 2506678 . - . mRNA SPBC365.05c ; systematic_id "SPBC365.05c" ; colour "2" ; gene "slu7 ||| SPBC365.05c" ; Alias "slu7" ; db_xref "SPD:18/18A01" ; GO "GO:0005681; spliceosome complex
GO:0000386; second spliceosomal transesterification activity
GO:0000350; formation of catalytic spliceosome for second transesterification step" ; controlled_curation "term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YDR088C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "slu7" ; product "splicing factor Slu7" ;
chromosome2 GeneDB mRNA 4290925 4291918 . - . mRNA SPBC16A3.04 ; systematic_id "SPBC16A3.04" ; colour "7" ; gene "SPBC16A3.04 ||| rsm25" ; Alias "rsm25" ; db_xref "SPD:07/07F08" ; GO "GO:0003735; structural constituent of ribosome
GO:0005763; mitochondrial small ribosomal subunit
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL093C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rsm25" ; product "mitochondrial ribosomal protein subunit Rsm25 (predicted)" ;
chromosome2 GeneDB mRNA 3656780 3658923 . - . mRNA SPBP8B7.14c ; systematic_id "SPBP8B7.14c" ; colour "2" ; gene "dpb2 ||| SPBP8B7.14c" ; Alias "dpb2" ; db_xref "SPD:36/36H09" ; GO "GO:0008622; epsilon DNA polymerase complex
GO:0006270; DNA replication initiation
GO:0003688; DNA replication origin binding
GO:0003688; DNA replication origin binding
GO:0003887; DNA-directed DNA polymerase activity
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12925774; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12925774; date=20100708 ||| term=orthologous to S. cerevisiae YPR175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dpb2" ; product "DNA polymerase epsilon catalytic subunit B, Dpb2" ;
chromosome2 GeneDB mRNA 3143466 3144945 . - . mRNA SPBC405.02c ; db_xref "SPD:20/20G08" ; systematic_id "SPBC405.02c" ; synonym "SPBC4C3.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 826000 827925 . - . mRNA SPBC530.14c ; systematic_id "SPBC530.14c" ; colour "2" ; gene "dsk1 ||| SPBC530.14c" ; Alias "dsk1" ; db_xref "SPD:33/33C06" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0007243; protein kinase cascade
GO:0048024; regulation of nuclear mRNA splicing, via spliceosome
GO:0007346; regulation of progression through mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8485317; date=19700101 ||| term=complementation, functionally complemented by human SRPK1; cv=complementation; date=19700101 ||| term=orthologous to S. cerevisiae YMR216C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Srp1; db_xref=PMID:10629038; date=20100825 ||| term=target is Srp2; db_xref=PMID:10629038; date=20100825 ||| term=target is Prp2; db_xref=PMID:9488736; date=20100825" ; primary_name "dsk1" ; product "SR protein-specific kinase Dsk1" ;
chromosome2 GeneDB mRNA 1274250 1274694 . + . mRNA SPBC3D6.15 ; systematic_id "SPBC3D6.15" ; colour "7" ; gene "rps2501 ||| rps25-1 ||| SPBC3D6.15" ; Alias "rps2501" ; db_xref "SPD:31/31D07" ; synonym "rps25-1" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR027C and YLR333C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; primary_name "rps2501" ; product "40S ribosomal protein S25 (predicted)" ;
chromosome2 GeneDB mRNA 931002 932442 . - . mRNA SPBC646.05c ; systematic_id "SPBC646.05c" ; colour "7" ; gene "erg9 ||| SPBC646.05c" ; Alias "erg9" ; db_xref "SPD:32/32H09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR190W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004310; farnesyl-diphosphate farnesyltransferase activity
GO:0005783; endoplasmic reticulum
GO:0006696; ergosterol biosynthesis
GO:0005515; protein binding
GO:0005789; endoplasmic reticulum membrane
GO:0042175; nuclear envelope-endoplasmic reticulum network" ; primary_name "erg9" ; product "squalene synthase Erg9 (predicted)" ; EC_number "2.5.1.21" ;
chromosome2 GeneDB mRNA 2996452 2996879 . + . mRNA SPBC2D10.16 ; systematic_id "SPBC2D10.16" ; colour "2" ; gene "SPBC2D10.16 ||| mhf1" ; db_xref "SPD:04/04A06" ; Alias "mhf1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL086W-A; date=20080107 ||| term=histone fold; qualifier=inferred from context; date=20080107 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20080107 ||| term=human APITD1 ortholog; db_xref=PMID:20347428; date=20100702 ||| term=disease associated, Fanconi anemia; db_xref=PMID:20347428; date=20100702" ; GO "GO:0071821; FANCM-MHF complex
GO:0003690; double-stranded DNA binding
; Rad51-dependent gene conversion at stalled replication forks
; double-strand break repair via homologous recombination
GO:0031297; replication fork processing" ; primary_name "mhf1" ; product "FANCM-MHF complex subunit Mhf1" ;
chromosome2 GeneDB mRNA 1293502 1296033 . - . mRNA SPBC3D6.13c ; systematic_id "SPBC3D6.13c" ; colour "7" ; gene "SPBC3D6.13c" ; Alias "pdi2" ; db_xref "SPD:37/37G11" ; GO "GO:0003756; protein disulfide isomerase activity
GO:0005789; endoplasmic reticulum membrane
GO:0006621; protein retention in ER
GO:0030433; ER-associated protein catabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pdi2" ; product "ER associated protein disulfide isomerase Pdi2 (predicted)" ; reserved_name "pdi2" ;
chromosome2 GeneDB mRNA 4391989 4392624 . - . mRNA SPBC1289.05c ; systematic_id "SPBC1289.05c" ; colour "7" ; db_xref "SPD:42/42C02" ; Alias "vma10" ; GO "GO:0000221; vacuolar proton-translocating V-type ATPase, V1 domain
GO:0005524; ATP binding
GO:0046961; proton transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR039C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vma10" ; product "V-type ATPase V1 domain subunit G (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB mRNA 4482546 4483703 . - . mRNA SPBPB2B2.10c ; systematic_id "SPBPB2B2.10c" ; colour "2" ; gene "SPBPB2B2.10c" ; Alias "gal7" ; db_xref "SPD:50/50C08" ; GO "GO:0008108; UDP-glucose:hexose-1-phosphate uridylyltransferase activity
GO:0033499; galactose catabolic process via UDP- galactose
GO:0005737; cytoplasm
GO:0052574; UDP-galactose biosynthetic process
GO:0042125; protein amino acid galactosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gal7" ; product "galactose-1-phosphate uridylyltransferase Gal7" ; EC_number "2.7.7.10" ;
chromosome2 GeneDB mRNA 3764820 3765709 . + . mRNA SPBC31F10.08 ; systematic_id "SPBC31F10.08" ; colour "2" ; gene "mde2 ||| SPBC31F10.08" ; Alias "mde2" ; db_xref "SPD:42/42E09" ; GO "GO:0042138; meiotic DNA double-strand break formation involved in reciprocal meiotic recombiantion
GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=warning, gene structure updated; cv=warning; date=20080718 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=name description, Mei4- Dependent Expression; cv=name_description; date=20091005" ; primary_name "mde2" ; product "Mde2 protein" ;
chromosome2 GeneDB mRNA 401165 402349 . - . mRNA SPBC106.12c ; db_xref "SPD:18/18G12" ; systematic_id "SPBC106.12c" ; colour "7" ; GO "GO:0000347; THO complex
GO:0003723; RNA binding
GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0006406; mRNA export from nucleus
GO:0006397; mRNA processing
GO:0034243; regulation of RNA elongation from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC106.12c" ; product "THO complex subunit (predicted)" ;
chromosome2 GeneDB mRNA 1103699 1104686 . - . mRNA SPBC1709.04c ; systematic_id "SPBC1709.04c" ; colour "2" ; gene "cyp3 ||| SPBC1709.04c" ; Alias "cyp3" ; db_xref "SPD:11/11A01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003755; peptidyl-prolyl cis-trans isomerase activity
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005634; nucleus" ; primary_name "cyp3" ; product "cyclophilin family peptidyl-prolyl cis- trans isomerase Cyp3" ; EC_number "5.2.1.8" ;
chromosome2 GeneDB mRNA 4096945 4100021 . + . mRNA SPBC56F2.08c ; db_xref "SPD:37/37B07" ; systematic_id "SPBC56F2.08c" ; colour "7" ; GO "GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0003729; mRNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YJR091C and YPR042C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC56F2.08c" ; product "RNA-binding protein (predicted)" ;
chromosome2 GeneDB mRNA 4022530 4023571 . + . mRNA SPBC3B9.19 ; systematic_id "SPBC3B9.19" ; colour "7" ; gene "SPBC3B9.19 ||| mge1" ; Alias "mge1" ; db_xref "SPD:07/07G03" ; GO "GO:0001405; presequence translocase-associated import motor
GO:0051082; unfolded protein binding
GO:0030150; protein import into mitochondrial matrix
GO:0000774; adenyl-nucleotide exchange factor activity
GO:0006457; protein folding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR232W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mge1" ; product "mitochondrial GrpE domain chaperone protein (predicted)" ;
chromosome2 GeneDB mRNA 1015332 1015825 . - . mRNA SPBC146.08c ; db_xref "SPD:03/03F12" ; systematic_id "SPBC146.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPBC146.08c" ; product "translation initiation factor eIF1A-like (predicted)" ;
chromosome2 GeneDB mRNA 406846 407908 . + . mRNA SPBC106.15 ; systematic_id "SPBC106.15" ; colour "2" ; gene "idi1 ||| SPBC106.15" ; Alias "idi1" ; db_xref "SPD:10/10C01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL117C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004452; isopentenyl-diphosphate delta- isomerase activity
GO:0006696; ergosterol biosynthesis
GO:0005829; cytosol" ; primary_name "idi1" ; product "isopentenyl-diphosphate delta-isomerase Idi1" ; EC_number "5.3.3.2" ;
chromosome2 GeneDB mRNA 1791010 1792223 . - . mRNA SPBC18H10.12c ; systematic_id "SPBC18H10.12c" ; colour "2" ; gene "rpl701 ||| SPBC18H10.12c" ; Alias "rpl701" ; obsolete_name "rpl702 ||| rpl7-2" ; db_xref "SPD:40/40D05" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL076C and YPL198W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=warning, primary name changed; cv=warning; date=20100217 ||| term=warning, ncRNA in intron; cv=warning; date=20100217" ; primary_name "rpl701" ; product "60S ribosomal protein L7" ;
chromosome2 GeneDB mRNA 3474712 3475308 . + . mRNA SPBC1718.03 ; systematic_id "SPBC1718.03" ; colour "2" ; gene "ker1 ||| SPBC1718.03" ; Alias "ker1" ; db_xref "SPD:03/03G11" ; GO "GO:0005730; nucleolus
GO:0006360; transcription from RNA polymerase I promoter
GO:0005736; DNA-directed RNA polymerase I complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YDR156W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15647272; date=20090213 ||| term=name description, lysine (K) and glutamic acid (E) Rich protein; db_xref=PMID:15647272; date=20100723" ; primary_name "ker1" ; product "DNA-directed RNA polymerase I complex subunit Ker1" ;
chromosome2 GeneDB mRNA 3541004 3543807 . + . mRNA SPBC887.02 ; db_xref "SPD:37/37D02" ; systematic_id "SPBC887.02" ; colour "7" ; GO "GO:0006821; chloride transport
GO:0016021; integral to membrane
GO:0005247; voltage-gated chloride channel activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC887.02" ; product "ClC chloride channel (predicted)" ;
chromosome2 GeneDB mRNA 3870230 3872157 . + . mRNA SPBC211.01 ; systematic_id "SPBC211.01" ; colour "7" ; gene "rsm10 ||| SPBC23E6.11 ||| SPBC211.01" ; note "this is reported to be mitochondrial...but maybe it is really cytoplasmic?" ; Alias "rsm10" ; db_xref "SPD:09/09A01" ; synonym "SPBC23E6.11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR041W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; primary_name "rsm10" ; product "mitochondrial ribosomal protein subunit S10 (predicted)" ;
chromosome2 GeneDB mRNA 2684012 2684750 . - . mRNA SPBC3E7.13c ; systematic_id "SPBC3E7.13c" ; colour "7" ; gene "SPBC3E7.13c" ; Alias "syf2" ; db_xref "SPD:08/08H11" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YGR129W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; primary_name "syf2" ; product "splicing factor, SYF2 family (predicted)" ; reserved_name "syf2" ;
chromosome2 GeneDB mRNA 4320120 4321619 . - . mRNA SPBC16C6.01c ; systematic_id "SPBC16C6.01c" ; colour "10" ; gene "SPBC543.11c ||| SPBC16C6.01c" ; Alias "SPBC543.11c" ; db_xref "SPD:33/33A04" ; synonym "SPBC543.11c" ; GO "GO:0016279; protein-lysine N-methyltransferase activity
GO:0006479; protein amino acid methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "SPBC543.11c" ; product "lysine methyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 1955627 1957276 . + . mRNA SPBC16E9.18 ; literature "PMID:19286980" ; systematic_id "SPBC16E9.18" ; colour "2" ; Alias "psd1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00561; ||| SPD:22/22H06" ; synonym "SPBC1E8.01" ; GO "GO:0006656; phosphatidylcholine biosynthesis
GO:0004609; phosphatidylserine decarboxylase activity
GO:0005743; mitochondrial inner membrane
GO:0006646; phosphatidylethanolamine biosynthetic process
GO:0071775; regulation of cell cycle cytokinesis
GO:0008360; regulation of cell shape" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19286980; date=20090727 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=phenotype, cell morphology, misshapen cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19286980; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=phenotype, growth auxotrophic for ethanolamine; cv=phenotype; db_xref=PMID:198286980; qualifier=deletion; with=GeneDB_Spombe:SPAC25B8.03|GeneDB_Spombe:SPAC31G5.15; date=20090727 ||| term=orthologous to S. cerevisiae YNL169C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "psd1" ; product "phosphatidylserine decarboxylase Psd1" ; EC_number "4.1.1.65" ;
chromosome2 GeneDB mRNA 876273 877371 . + . mRNA SPBC713.05 ; db_xref "SPD:41/41H10" ; systematic_id "SPBC713.05" ; colour "7" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MORG1 ortholog; date=20101013" ; gene "SPBC713.05" ; product "WD repeat protein, human MAPK organizer 1 (MORG1) family (predicted)" ;
chromosome2 GeneDB mRNA 2341454 2343158 . - . mRNA SPBC24C6.10c ; db_xref "SPD:20/20G03" ; systematic_id "SPBC24C6.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL146W; date=19700101 ||| term=human NCKIPSD ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; colour "7" ; GO "GO:0007010; cytoskeleton organization and biogenesis
GO:0005856; cytoskeleton
GO:0030100; regulation of endocytosis" ; gene "SPBC24C6.10c" ; product "conserved cytoskeletal protein, possible WASp interacting (predicted)" ;
chromosome2 GeneDB mRNA 1757520 1759229 . + . mRNA SPBC11G11.01 ; systematic_id "SPBC11G11.01" ; colour "7" ; gene "SPBC11G11.01 ||| fis1" ; Alias "fis1" ; db_xref "SPD:06/06E11" ; GO "GO:0007005; mitochondrion organization and biogenesis
GO:0000266; mitochondrial fission
GO:0005741; mitochondrial outer membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL065C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fis1" ; product "mitochondrial fission protein Fis1 (predicted)" ;
chromosome2 GeneDB mRNA 3723383 3725090 . + . mRNA SPBC25D12.05 ; systematic_id "SPBC25D12.05" ; colour "2" ; gene "trm1 ||| SPBC25D12.05" ; Alias "trm1" ; db_xref "SPD:33/33C08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR120C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004809; tRNA (guanine-N2-)-methyltransferase activity
GO:0030488; tRNA methylation
GO:0005739; mitochondrion
GO:0031965; nuclear membrane
GO:0008033; tRNA processing" ; primary_name "trm1" ; product "N2,N2-dimethylguanosine tRNA methyltransferase" ; EC_number "2.1.1.32" ;
chromosome2 GeneDB mRNA 637461 639018 . + . mRNA SPBC115.02c ; db_xref "SPD:21/21B06" ; systematic_id "SPBC115.02c" ; colour "7" ; GO "GO:0016887; ATPase activity
GO:0005739; mitochondrion
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL052W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC115.02c" ; product "AFG1 family mitochondrial ATPase (predicted)" ;
chromosome2 GeneDB mRNA 2291571 2293162 . + . mRNA SPBC16H5.05c ; systematic_id "SPBC16H5.05c" ; colour "2" ; gene "cyp7 ||| cwf27 ||| SPBC16H5.05c" ; Alias "cyp7" ; db_xref "SPD:25/25C03" ; synonym "cwf27" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0003755; peptidyl-prolyl cis-trans isomerase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YPL064C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cyp7" ; product "cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp7 (predicted)" ; EC_number "5.2.1.8" ;
chromosome2 GeneDB mRNA 315711 317580 . + . mRNA SPBC1773.15 ; db_xref "SPD:24/24B04" ; systematic_id "SPBC1773.15" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0071916; dipeptide transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR152W and YLR004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1773.15" ; product "dipeptide transmembrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 4259910 4261448 . - . mRNA SPBC16A3.19 ; systematic_id "SPBC16A3.19" ; colour "2" ; gene "SPBC16A3.19 ||| eaf7" ; Alias "eaf7" ; db_xref "SPD:13/13H02" ; GO "GO:0035267; NuA4 histone acetyltransferase complex
GO:0005634; nucleus
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006281; DNA repair
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL136W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "eaf7" ; product "histone acetyltransferase complex subunit Eaf7" ;
chromosome2 GeneDB mRNA 3517461 3518290 . + . mRNA SPBC1105.06 ; systematic_id "SPBC1105.06" ; colour "2" ; gene "pmc4 ||| SPBC1105.06 ||| med4" ; Alias "pmc4" ; db_xref "SPD:43/43A03" ; synonym "med4" ; GO "GO:0016592; mediator complex
GO:0006366; transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10625684; date=19700101 ||| term=orthologous to S. cerevisiae YOR174W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "pmc4" ; product "mediator complex subunit Pmc4" ;
chromosome2 GeneDB mRNA 2251530 2253670 . - . mRNA SPBC15C4.06c ; systematic_id "SPBC15C4.06c" ; colour "7" ; gene "SPBC15C4.06c ||| SPBC21H7.01c" ; db_xref "SPD:35/35A04" ; synonym "SPBC21H7.01c" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB mRNA 2835338 2837449 . - . mRNA SPBC19C7.08c ; db_xref "SPD:46/46D07" ; systematic_id "SPBC19C7.08c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0008175; tRNA methyltransferase activity
GO:0030488; tRNA methylation
GO:0031591; wybutosine biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kelch repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YOL141W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC19C7.08c" ; product "AdoMet-dependent tRNA methyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 1854753 1856882 . - . mRNA SPBC3H7.15 ; systematic_id "SPBC3H7.15" ; colour "2" ; gene "hhp1 ||| SPBC3H7.15" ; Alias "hhp1" ; db_xref "SPD:40/40D07" ; GO "GO:0033551; monopolin complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0045143; homologous chromosome segregation
GO:0006468; protein amino acid phosphorylation
GO:0006282; regulation of DNA repair
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:8026462; date=20100709 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8026462; date=19700101 ||| term=casein kinase I subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YPL204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "hhp1" ; product "serine/threonine protein kinase Hhp1" ;
chromosome2 GeneDB mRNA 2576576 2577786 . + . mRNA SPBC2G5.01 ; db_xref "SPD:17/17F11" ; systematic_id "SPBC2G5.01" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CCDC47 ortholog; date=20100727" ; gene "SPBC2G5.01" ; product "DUF1682 family protein" ;
chromosome2 GeneDB mRNA 992760 996435 . + . mRNA SPBP35G2.14 ; db_xref "SPD:47/47H12" ; systematic_id "SPBP35G2.14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YJR091C and YPR042C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPBP35G2.14" ; product "RNA-binding protein" ;
chromosome2 GeneDB mRNA 449635 451012 . - . mRNA SPBC428.05c ; systematic_id "SPBC428.05c" ; colour "2" ; gene "arg12 ||| SPBC428.05c" ; Alias "arg12" ; db_xref "SPD:19/19F08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, argininemia; date=20060725 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YOL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004055; argininosuccinate synthase activity
GO:0006526; arginine biosynthesis
GO:0000053; argininosuccinate metabolism
GO:0005829; cytosol
GO:0004055; argininosuccinate synthase activity
GO:0006526; arginine biosynthesis
GO:0000050; urea cycle" ; primary_name "arg12" ; product "argininosuccinate synthase (predicted)" ; EC_number "6.3.4.5" ;
chromosome2 GeneDB mRNA 2109356 2110397 . - . mRNA SPBC23G7.07c ; db_xref "SPD:13/13D01" ; systematic_id "SPBC23G7.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005634; nucleus
GO:0042274; ribosomal small subunit ribogenesis
GO:0030686; 90S preribosome" ; gene "SPBC23G7.07c" ; product "U3-containing 90S preribosome complex subunit (predicted)" ;
chromosome2 GeneDB mRNA 3671407 3674622 . + . mRNA SPBP8B7.19 ; systematic_id "SPBP8B7.19" ; colour "2" ; gene "SPBP8B7.19 ||| spt16" ; Alias "spt16" ; db_xref "SPD:29/29H10" ; GO "GO:0035101; FACT complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0006261; DNA-dependent DNA replication
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0043486; histone exchange
GO:0006334; nucleosome assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL207W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17614284; date=20070813 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "spt16" ; product "FACT complex component Spt16" ;
chromosome2 GeneDB mRNA 1577407 1578009 . - . mRNA SPBC28F2.04c ; systematic_id "SPBC28F2.04c" ; colour "2" ; gene "cwf7 ||| spf27 ||| SPBC28F2.04c" ; Alias "cwf7" ; db_xref "SPD:42/42D04" ; synonym "spf27" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11884590; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=complementation, functionally complemented by S. cerevisiae SNT309; db_xref=PMID:12088152; date=19700101 ||| term=orthologous to S. cerevisiae YPR101W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf7" ; product "splicing factor Cwf7" ;
chromosome2 GeneDB mRNA 2114482 2115027 . + . mRNA SPBC23G7.09 ; Alias "matmc_2" ; systematic_id "SPBC23G7.09" ; synonym "matmc" ; colour "2" ; controlled_curation "term=mating-type m-specific polypeptide matmc; date=20090429 ||| term=species distribution, conserved in Fungi; date=20090429 ||| term=species distribution, conserved in Fungi only; date=20090429 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090429 ||| term=similar to S. pombe SPBC1711.02 (identical); date=19700101 ||| term=HMG box; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0007531; mating type determination" ; gene "matmc_2 ||| matmc ||| SPBC23G7.09" ; primary_name "matmc_2" ; product "mating-type m-specific polypeptide mc 2" ;
chromosome2 GeneDB mRNA 3222719 3226506 . - . mRNA SPBC21.06c ; systematic_id "SPBC21.06c" ; colour "2" ; gene "cdc7 ||| pld1 ||| its10 ||| SPBC21.06c" ; Alias "cdc7" ; db_xref "SPD:41/41A10" ; synonym "pld1 ||| its10" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0031028; septation initiation signaling
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8039497; date=20060530 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, multinucleate; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=HEAT repeat; qualifier=inferred from context; date=20060530 ||| term=orthologous to S. cerevisiae YAR019C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Cdc11; qualifier=phosphorylates; db_xref=PMID:12546793; date=20100820" ; primary_name "cdc7" ; product "serine/threonine protein kinase Cdc7" ;
chromosome2 GeneDB mRNA 2631042 2631967 . - . mRNA SPBC6B1.03c ; db_xref "SPD:12/12H08" ; systematic_id "SPBC6B1.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR097C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0031505; cell wall organization and biogenesis (sensu Fungi)" ; gene "SPBC6B1.03c" ; product "Pal1 family protein" ;
chromosome2 GeneDB mRNA 2925512 2927698 . + . mRNA SPBC1703.06 ; systematic_id "SPBC1703.06" ; colour "2" ; gene "pof10 ||| SPBC1703.06" ; Alias "pof10" ; db_xref "SPD:27/27F04" ; GO "GO:0005737; cytoplasm
GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=orthologous to S. cerevisiae YML088W; date=19700101 ||| term=phenotype, viable; cv=phenotype; evidence=TAS; db_xref=PMID:15147268; date=20080123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pof10" ; product "F-box protein Pof10" ;
chromosome2 GeneDB mRNA 1651012 1651811 . - . mRNA SPBC21B10.10 ; systematic_id "SPBC21B10.10" ; colour "7" ; gene "rps402 ||| rps4-2 ||| SPBC21B10.10" ; Alias "rps402" ; db_xref "SPD:43/43C02" ; synonym "rps4-2" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR145C and YHR203C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps402" ; product "40S ribosomal protein S4 (predicted)" ;
chromosome2 GeneDB mRNA 1113323 1117670 . + . mRNA SPBC1709.08 ; systematic_id "SPBC1709.08" ; colour "2" ; gene "cft1 ||| SPBC1709.08" ; Alias "cft1" ; db_xref "SPD:39/39E05" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0005849; mRNA cleavage factor complex
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR301W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cft1" ; product "cleavage factor one Cft1 (predicted)" ;
chromosome2 GeneDB mRNA 3757481 3759352 . - . mRNA SPBC31F10.04c ; systematic_id "SPBC31F10.04c" ; colour "2" ; gene "srb4 ||| SPBC31F10.04c ||| med17" ; Alias "srb4" ; db_xref "SPD:36/36A12" ; synonym "med17" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10625684; date=19700101 ||| term=orthologous to S. cerevisiae YER022W; date=19700101 ||| term=phenotype, septation defects; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=disease associated, infantile cerebral and cerebellar atrophy; date=20101019 ||| term=disease associated, neurological disorders; date=20101019" ; primary_name "srb4" ; product "mediator complex subunit Srb4" ;
chromosome2 GeneDB mRNA 2897100 2897557 . + . mRNA SPBP4H10.13 ; systematic_id "SPBP4H10.13" ; colour "7" ; gene "rps2302 ||| rps23-2 ||| SPBP4H10.13" ; Alias "rps2302" ; db_xref "SPD:39/39G11" ; synonym "rps23-2" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR118W and YPR132W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps2302" ; product "40S ribosomal protein S23 (predicted)" ;
chromosome2 GeneDB mRNA 1459109 1460097 . - . mRNA SPBC32H8.04c ; systematic_id "SPBC32H8.04c" ; colour "7" ; gene "SPBC32H8.04c" ; obsolete_name "pi019 ||| SPACTOKYO_453.16" ; db_xref "SPD:41/41D11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR339C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=PINc domain; date=20091004" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing" ; product "rRNA processing protein Fcf1 (predicted)" ;
chromosome2 GeneDB mRNA 1929995 1931324 . - . mRNA SPBC16E9.09c ; db_xref "SPD:10/10D10" ; systematic_id "SPBC16E9.09c" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR110W and YGL002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC16E9.09c" ; product "COPII vesicle coat component Erp5/Erp6 (predicted)" ;
chromosome2 GeneDB mRNA 1085876 1087087 . + . mRNA SPBC1734.13 ; systematic_id "SPBC1734.13" ; colour "7" ; gene "atp3 ||| SPBC1734.13" ; Alias "atp3" ; db_xref "SPD:14/14C07" ; GO "GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0005756; proton-transporting ATP synthase, central stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR039W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "atp3" ; product "F1-ATPase gamma subunit (predicted)" ;
chromosome2 GeneDB mRNA 4153236 4157111 . - . mRNA SPBC14F5.03c ; systematic_id "SPBC14F5.03c" ; colour "2" ; gene "kap123 ||| SPBC14F5.03c" ; Alias "kap123" ; db_xref "SPD:48/48A08" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0031965; nuclear membrane
GO:0008565; protein transporter activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YER110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "kap123" ; product "karyopherin Kap123" ;
chromosome2 GeneDB mRNA 2036019 2036579 . + . mRNA SPBP23A10.16 ; systematic_id "SPBP23A10.16" ; colour "2" ; gene "sdh4 ||| tim18 ||| SPBP23A10.16" ; note "This gene could be involved in both the succinate dehydrogenase complex (ubiquinone) (cytochrome b small subunit) and inner membrane translocase component due to similarity to S. cerevisiae YLR164W, YDR178W and YOR297C" ; Alias "sdh4" ; db_xref "SPD:05/05G11" ; synonym "tim18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by CCAAT complex; db_xref=PMID:16963626; evidence=IMP; cv=gene_ex; date=20070516 ||| term=gene expression, promoter contains CCAAT element; db_xref=PMID:16963626; evidence=IMP; cv=gene_ex; date=20070516 ||| term=orthologous to S. cerevisiae YLR164W and YOR297C and YDR178W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human SDHD ortholog; date=20100217" ; GO "GO:0016021; integral to membrane
GO:0042721; mitochondrial inner membrane protein insertion complex
GO:0005749; respiratory chain complex II (sensu Eukaryota)
GO:0043495; protein anchor
GO:0006121; mitochondrial electron transport, succinate to ubiquinone
GO:0045039; protein import into mitochondrial inner membrane
GO:0020037; heme binding" ; primary_name "sdh4" ; product "TIM22 inner membrane protein import complex anchor subunit Tim18" ;
chromosome2 GeneDB mRNA 4384096 4385585 . - . mRNA SPBC1289.02c ; systematic_id "SPBC1289.02c" ; colour "2" ; gene "uap2 ||| SPBC1289.02c" ; Alias "uap2" ; db_xref "SPD:32/32G04" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9371883; date=19700101 ||| term=orthologous to S. cerevisiae YNL286W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "uap2" ; product "U2 snRNP-associated protein Uap2" ;
chromosome2 GeneDB mRNA 3314338 3317452 . + . mRNA SPBC17D11.05 ; systematic_id "SPBC17D11.05" ; colour "2" ; gene "tif32 ||| SPBC17D11.05" ; Alias "tif32" ; db_xref "SPD:34/34A01" ; GO "GO:0006413; translational initiation
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0016282; eukaryotic 43S preinitiation complex
GO:0005515; protein binding
GO:0070321; regulation of translation in response to nitrogen starvation
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR079C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tif32" ; product "translation initiation factor eIF3a" ;
chromosome2 GeneDB mRNA 2509420 2510474 . - . mRNA SPBC365.08c ; db_xref "SPD:09/09F04" ; systematic_id "SPBC365.08c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0030433; ER-associated protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR411C and YBR201W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal anchor; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC365.08c" ; product "Der1-like (degradation in the ER) family (predicted)" ;
chromosome2 GeneDB mRNA 4185216 4186924 . - . mRNA SPBC3F6.01c ; db_xref "SPD:23/23B04" ; systematic_id "SPBC3F6.01c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR123C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004722; protein serine/threonine phosphatase activity
GO:0006470; protein amino acid dephosphorylation" ; gene "SPBC3F6.01c" ; product "serine/threonine protein phosphatase (predicted)" ; EC_number "3.1.3.16" ;
chromosome2 GeneDB mRNA 206592 209508 . + . mRNA SPBC660.07 ; systematic_id "SPBC660.07" ; colour "2" ; db_xref "SPD:50/50A10" ; Alias "ntp1" ; GO "GO:0004555; alpha,alpha-trehalase activity
GO:0005509; calcium ion binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034605; cellular response to heat
GO:0034599; cellular response to oxidative stress
GO:0009409; response to cold
GO:0006970; response to osmotic stress
GO:0030437; sporulation (sensu Fungi)
GO:0005991; trehalose metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR001C and YBR001C; date=19700101 ||| term=target of SAPK pathway; db_xref=PMID:15164362; date=19700101 ||| term=gene expression, promoter contains CRE element; db_xref=PMID:15164362; cv=gene_ex; date=19700101 ||| term=gene expression, promoter contains HSE element; db_xref=PMID:15164362; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:15164362; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by Hsf1; db_xref=PMID:15164362; cv=gene_ex; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15965654; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15965654; date=20090213" ; primary_name "ntp1" ; product "alpha,alpha-trehalase Ntp1" ; EC_number "3.2.1.28" ;
chromosome2 GeneDB mRNA 36892 37188 . + . mRNA SPBC1348.13 ; systematic_id "SPBC1348.13" ; synonym "SPAC1348.13" ; colour "10" ; controlled_curation "term=warning, previously annotated as pseudogene; cv=warning; date=20091107 ||| term=warning, possible pseudogene, appears to be mitochondrial genome fragment; cv=warning; date=20091108" ; GO "GO:0008150; biological_process
GO:0003674; molecular_function
GO:0005575; cellular_component" ; gene "SPBC1348.13" ; product "similar to fragment of cox1 intron protein" ;
chromosome2 GeneDB mRNA 2351022 2357349 . - . mRNA SPBC19G7.05c ; systematic_id "SPBC19G7.05c" ; colour "2" ; gene "bgs1 ||| cps1 ||| drc1 ||| SPBC19G7.05c" ; Alias "bgs1" ; db_xref "SPD:48/48H01" ; synonym "cps1 ||| drc1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to cyclosporine; allele=cps1-12; db_xref=PMID:9401022; cv=phenotype; date=19700101 ||| term=phenotype, sensitive to papulacandin B; db_xref=PMID:9401022; allele=cps1-12; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, branched; db_xref=PMID:17581129; date=20100712 ||| term=phenotype, septation defects; db_xref=PMID:17581129; date=20100712 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061117 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:11937031; date=19700101 ||| term=orthologous to S. cerevisiae YLR342W and YGR032W and YMR306W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=localization dependent on secretory pathway small GTPase ARF; date=20100308 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:11937031; date=20090213" ; GO "GO:0000148; 1,3-beta-glucan synthase complex
GO:0032153; cell division site
GO:0043187; cell septum surface
GO:0009277; cell wall (sensu Fungi)
GO:0003843; 1,3-beta-glucan synthase activity
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0000747; conjugation with cellular fusion
GO:0031671; primary septum biogenesis
GO:0030476; spore wall assembly (sensu Fungi)
GO:0032878; regulation of establishment or maintenance of cell polarity
GO: SF polarity, and remove parent; regulation of establishment or maintenance of cell polarity resulting in cell shape
GO:0071775; regulation of cell cycle cytokinesis" ; primary_name "bgs1" ; product "1,3-beta-glucan synthase catalytic subunit Bgs1" ; EC_number "2.4.1.34" ;
chromosome2 GeneDB mRNA 3176682 3177967 . + . mRNA SPBC776.03 ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00300; ||| SPD:19/19B11" ; systematic_id "SPBC776.03" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR139C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004412; homoserine dehydrogenase activity
GO:0009090; homoserine biosynthetic process
GO:0009086; methionine biosynthetic process
GO:0009088; threonine biosynthetic process" ; gene "SPBC776.03" ; product "homoserine dehydrogenase (predicted)" ; EC_number "1.1.1.3" ;
chromosome2 GeneDB mRNA 138298 140263 . - . mRNA SPBC1683.03c ; db_xref "SPD:45/45A12" ; systematic_id "SPBC1683.03c" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR378w; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1683.03c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 3961861 3962279 . - . mRNA SPBC26H8.14c ; systematic_id "SPBC26H8.14c" ; colour "7" ; gene "cox17 ||| SPBC26H8.14c" ; Alias "cox17" ; db_xref "SPD:02/02A01" ; GO "GO:0005829; cytosol
GO:0005758; mitochondrial intermembrane space
GO:0016531; copper chaperone activity
GO:0008535; cytochrome c oxidase complex assembly
GO:0015680; intracellular copper ion transport
GO:0007005; mitochondrion organization and biogenesis
GO:0006878; cellular copper ion homeostasis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cox17" ; product "cytochrome C oxidase copper chaperone Cox17 (predicted)" ;
chromosome2 GeneDB mRNA 494681 496387 . + . mRNA SPBC902.06 ; systematic_id "SPBC902.06" ; colour "2" ; gene "mto2 ||| SPBC902.06" ; db_xref "SPD:19/19A09" ; Alias "mto2" ; GO "GO:0000923; equatorial microtubule organizing center
GO:0031021; interphase microtubule organizing center
GO:0015630; microtubule cytoskeleton
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031122; cytoplasmic microtubule organization
GO:0040023; establishment of nucleus localization
GO:0033566; gamma-tubulin complex localization
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center
GO:0032189; maintenance of contractile ring localization
GO:0010968; regulation of microtubule nucleation
GO:0043015; gamma-tubulin binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mto2" ; product "MT organizer Mto2" ;
chromosome2 GeneDB mRNA 1550293 1553467 . - . mRNA SPBC29B5.02c ; systematic_id "SPBC29B5.02c" ; colour "2" ; gene "isp4 ||| SPBC29B5.02c" ; Alias "isp4" ; db_xref "SPD:33/33G09" ; GO "GO:0000747; conjugation with cellular fusion
GO:0031142; induction of conjugation upon nitrogen starvation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL212C and YPR194C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "isp4" ; product "OPT oligopeptide transporter family Isp4" ;
chromosome2 GeneDB mRNA 3461360 3463041 . + . mRNA SPBC2G2.14 ; db_xref "SPD:25/25F12" ; systematic_id "SPBC2G2.14" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC2G2.14" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3072909 3075410 . - . mRNA SPBC30D10.11 ; systematic_id "SPBC30D10.11" ; colour "2" ; gene "gpi1 ||| SPBC30D10.11" ; Alias "gpi1" ; db_xref "SPD:40/40G07" ; GO "GO:0033205; cell cycle cytokinesis
GO:0006506; GPI anchor biosynthesis
GO:0000506; glycosylphosphatidylinositol-N- acetylglucosaminyltransferase (GPI-GnT) complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9046095; date=19700101 ||| term=orthologous to S. cerevisiae YGR216C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gpi1" ; product "pig-Q" ;
chromosome2 GeneDB mRNA 3464770 3466205 . + . mRNA SPBC2G2.16 ; db_xref "SPD:22/22C11" ; systematic_id "SPBC2G2.16" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009298; GDP-mannose biosynthetic process
GO:0000032; cell wall mannoprotein biosynthetic process
GO:0006486; protein amino acid glycosylation
GO:0004476; mannose-6-phosphate isomerase activity" ; gene "SPBC2G2.16" ; product "mannose-6-phosphate isomerase (predicted)" ; EC_number "5.3.1.8" ;
chromosome2 GeneDB mRNA 181602 182528 . + . mRNA SPBC1198.05 ; db_xref "SPD:06/06G11" ; systematic_id "SPBC1198.05" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR454C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004385; guanylate kinase activity
GO:0006183; GTP biosynthesis
GO:0046037; GMP metabolism
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0031506; cell wall glycoprotein biosynthetic process" ; gene "SPBC1198.05" ; product "guanylate kinase (predicted)" ; EC_number "2.7.4.8" ;
chromosome2 GeneDB mRNA 3737080 3737520 . - . mRNA SPBC13G1.06c ; systematic_id "SPBC13G1.06c" ; colour "7" ; gene "isd11 ||| SPBC13G1.06c" ; note "this gene product was previously annotated to the NADH dehydrogenase of the mitochondrial respiratory chain complex I, this mapping was removed due to lack of the remaining 40 subunits found in mammals (PMID:1518044)" ; Alias "isd11" ; db_xref "SPD:02/02H05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER048W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=ACN9 family; date=20100820" ; GO "GO:0005759; mitochondrial matrix
GO:0016226; iron-sulfur cluster assembly" ; primary_name "isd11" ; product "mitochondrial iron sulfur cluster assembly protein Isd11 (predicted)" ;
chromosome2 GeneDB mRNA 2871762 2873309 . + . mRNA SPBP4H10.03 ; systematic_id "SPBP4H10.03" ; colour "2" ; gene "oxa102 ||| oxa1 ||| oxa1-2 ||| oxa1sp2 ||| SPBP4H10.03" ; Alias "oxa102" ; obsolete_name "SPBC1346.02c" ; db_xref "SPD:32/32F10" ; synonym "oxa1 ||| oxa1-2 ||| oxa1sp2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10712694; date=19700101 ||| term=orthologous to S. cerevisiae YER154W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0008565; protein transporter activity
GO:0008535; cytochrome c oxidase complex assembly
GO:0006461; protein complex assembly
GO:0045039; protein import into mitochondrial inner membrane" ; primary_name "oxa102" ; product "mitochondrial inner membrane translocase Oxa102" ;
chromosome2 GeneDB mRNA 2377980 2379572 . + . mRNA SPBC19G7.15 ; systematic_id "SPBC19G7.15" ; colour "2" ; gene "nup44 ||| SPBC19G7.15" ; Alias "nup44" ; db_xref "SPD:20/20A07" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
; nuclear membrane
GO:0007346; regulation of mitotic cell cycle
GO:0006407; rRNA export from nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:15116432; date=20100727 ||| term=FG repeat; date=19700101 ||| term=orthologous to S. cerevisiae YGR119C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nup44" ; product "nucleoporin Nup44" ;
chromosome2 GeneDB mRNA 4421413 4425264 . + . mRNA SPBC1289.15 ; systematic_id "SPBC1289.15" ; colour "12" ; gene "SPBC1289.15 ||| SPBC8E4.07c" ; note "26 copies of a 35 amino acid repeat" ; db_xref "SPD:48/48F02" ; synonym "SPBC8E4.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; GO "GO:0009986; cell surface
GO:0005576; extracellular region
GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; product "cell surface glycoprotein (predicted)" ;
chromosome2 GeneDB mRNA 989519 990234 . + . mRNA SPBP35G2.12 ; db_xref "SPD:07/07A03" ; systematic_id "SPBP35G2.12" ; colour "7" ; GO "GO:0047631; ADP-ribose diphosphatase activity
GO:0055086; nucleobase, nucleoside and nucleotide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR111C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBP35G2.12" ; product "ADP-ribose diphosphatase, NudF subfamily (predicted)" ;
chromosome2 GeneDB mRNA 2694334 2698128 . + . mRNA SPBC4F6.06 ; systematic_id "SPBC4F6.06" ; colour "2" ; db_xref "SPD:33/33H07" ; Alias "kin1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:2236039; date=19700101 ||| term=orthologous to S. cerevisiae YLR096W and YDR122W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0010687; site selection involved in cell cycle cytokinesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0060632; regulation of microtubule-based movement
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0004674; protein serine/threonine kinase activity
GO:0005737; cytoplasm
GO:0051286; cell tip
GO:0005524; ATP binding
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0051286; cell tip
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0015630; microtubule cytoskeleton" ; primary_name "kin1" ; product "microtubule affinity-regulating kinase Kin1" ;
chromosome2 GeneDB mRNA 498476 499026 . - . mRNA SPBC1685.02c ; systematic_id "SPBC1685.02c" ; colour "7" ; gene "rps1202 ||| rps12-2 ||| SPBC1685.02c" ; Alias "rps1202" ; db_xref "SPD:31/31E05" ; synonym "rps12-2" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YOR369C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1202" ; product "40S ribosomal protein S12 (predicted)" ;
chromosome2 GeneDB mRNA 2225299 2226143 . + . mRNA SPBC14C8.13 ; db_xref "SPD:43/43B06" ; systematic_id "SPBC14C8.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR412W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SRRD ortholog; date=20100727" ; colour "10" ; gene "SPBC14C8.13" ; product "SRR1 family protein" ;
chromosome2 GeneDB mRNA 3085985 3088023 . + . mRNA SPBC30D10.07c ; db_xref "SPD:46/46A11" ; systematic_id "SPBC30D10.07c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, multiple carboxylase deficiency; date=20060920 ||| term=orthologous to S. cerevisiae YDL141W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0018271; biotin-protein ligase activity
GO:0009305; protein amino acid biotinylation
GO:0005737; cytoplasm" ; gene "SPBC30D10.07c" ; product "biotin-protein ligase (predicted)" ; EC_number "6.3.4.15" ;
chromosome2 GeneDB mRNA 677583 679701 . - . mRNA SPBC947.02 ; systematic_id "SPBC947.02" ; colour "2" ; gene "apl2 ||| SPBC947.02" ; Alias "apl2" ; db_xref "SPD:27/27F07" ; GO "GO:0030276; clathrin binding
GO:0016197; endosome transport
GO:0030121; AP-1 adaptor complex
GO:0005794; Golgi apparatus
GO:0005768; endosome
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL135C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=phenotype, sensitive to FK605; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=adaptin family; date=20100902" ; primary_name "apl2" ; product "AP-1 adaptor complex subunit beta subunit Apl2" ;
chromosome2 GeneDB mRNA 2957510 2958552 . - . mRNA SPBC2A9.06c ; db_xref "SPD:43/43D08" ; systematic_id "SPBC2A9.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL193W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005783; endoplasmic reticulum
GO:0008834; di-trans,poly-cis- decaprenylcistransferase activity
GO:0006486; protein amino acid glycosylation" ; gene "SPBC2A9.06c" ; product "di-trans,poly-cis-decaprenylcistransferase(predicted)" ; EC_number "2.5.1.-" ;
chromosome2 GeneDB mRNA 4220639 4222564 . - . mRNA SPBC16G5.05c ; db_xref "SPD:21/21H04" ; systematic_id "SPBC16G5.05c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005783; endoplasmic reticulum
GO:0016021; integral to membrane
GO:0045047; protein targeting to ER
GO:0006020; myo-inositol metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER120W and YBL091C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC16G5.05c" ; product "MSP domain (predicted)" ;
chromosome2 GeneDB mRNA 4060033 4061137 . + . mRNA SPBC215.15 ; systematic_id "SPBC215.15" ; colour "2" ; gene "sec13 ||| SPBC215.15" ; Alias "sec13" ; db_xref "SPD:13/13G12" ; GO "GO:0030127; COPII vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
; nuclear pore
GO:0006886; intracellular protein transport
GO:0005737; cytoplasm
GO:0006999; nuclear pore organization and biogenesis
GO:0005886; plasma membrane" ; controlled_curation "term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR208W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11821054; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec13" ; product "COPII-coated vesicle component Sec13" ;
chromosome2 GeneDB mRNA 1380125 1381611 . - . mRNA SPBC8D2.12c ; systematic_id "SPBC8D2.12c" ; colour "7" ; gene "SPBC8D2.12c" ; obsolete_name "pI053" ; db_xref "SPD:32/32G10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Leigh syndrome; date=20100720 ||| term=disease associated, neurological disorders; date=20100720" ; GO "GO:0005739; mitochondrion" ; product "mitochondrial translational activator of cytochrome C oxidase I (predicted)" ;
chromosome2 GeneDB mRNA 1827150 1828198 . + . mRNA SPBC9B6.08 ; systematic_id "SPBC9B6.08" ; colour "2" ; gene "clc1 ||| SPBC9B6.08" ; Alias "clc1" ; db_xref "SPD:40/40A04" ; GO "GO:0030125; clathrin vesicle coat
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR167W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "clc1" ; product "clathrin light chain" ;
chromosome2 GeneDB mRNA 3970969 3974045 . + . mRNA SPBC26H8.10 ; systematic_id "SPBC26H8.10" ; colour "2" ; gene "dis3 ||| SPBC26H8.10 ||| rrp44" ; note "does not bind GeneDB_Spombe:SPBC776.02c PMID 1944266" ; Alias "dis3" ; db_xref "SPD:34/34A05" ; synonym "rrp44" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:1944266; date=19700101 ||| term=orthologous to S. cerevisiae YOL021C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18025105; date=20090110 ||| term=PINc domain; date=20091004 ||| term=name description, chromosome DISjunction; cv=name_description; date=20091209" ; GO "GO:0000177; cytoplasmic exosome (RNase complex)
GO:0005739; mitochondrion
GO:0000176; nuclear exosome (RNase complex)
GO:0005634; nucleus
GO:0000175; 3'-5'-exoribonuclease activity
GO:0008536; Ran GTPase binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0007346; regulation of progression through mitotic cell cycle
GO:0032853; positive regulation of Ran GTPase
GO:0000465; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
GO:0007051; spindle organization
GO:0061013; nuclear-transcribed mRNA catabolism" ; primary_name "dis3" ; product "3'-5' exoribonuclease subunit Dis3 (predicted)" ;
chromosome2 GeneDB mRNA 3625865 3628565 . + . mRNA SPBC317.01 ; systematic_id "SPBC317.01" ; colour "2" ; gene "mbx2 ||| pvg4 ||| SPBC317.01" ; Alias "mbx2" ; db_xref "SPD:17/17F05" ; synonym "pvg4" ; GO "GO:0005634; nucleus
cell wall biosynthesis (sensu Fungi); GO:0009272; GO:0009272
GO:0051072; 4,6-pyruvylated galactose residue biosynthesis
GO:0043565; sequence specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL089C and YBR182C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Mads BoX protein; cv=name_description; date=20091221" ; primary_name "mbx2" ; product "MADS-box transcription factor Pvg4 (predicted)" ;
chromosome2 GeneDB mRNA 234477 239592 . - . mRNA SPBC31E1.01c ; systematic_id "SPBC31E1.01c" ; colour "2" ; db_xref "SPD:31/31A11" ; Alias "atg2" ; synonym "mug36 ||| SPBC660.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL242W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0030242; peroxisome degradation
GO:0032258; CVT pathway
GO:0030437; sporulation (sensu Fungi)
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; primary_name "atg2" ; product "autophagy associated protein Atg2" ;
chromosome2 GeneDB mRNA 2829800 2831287 . + . mRNA SPBC19C7.05 ; db_xref "SPD:04/04A05" ; systematic_id "SPBC19C7.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR003W and YBR005W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20090206 ||| term=species distribution, conserved in Vertebrates; date=20090206" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0031505; cell wall organization and biogenesis
GO:0016192; vesicle-mediated transport" ; gene "SPBC19C7.05" ; product "cell wall organization protein (predicted)" ;
chromosome2 GeneDB mRNA 4130876 4133635 . + . mRNA SPBC1861.02 ; systematic_id "SPBC1861.02" ; colour "2" ; gene "abp2 ||| SPBC1861.02" ; Alias "abp2" ; db_xref "SPD:33/33C03" ; GO "GO:0003688; DNA replication origin binding
GO:0005515; protein binding
GO:0006270; DNA replication initiation
GO:0043596; nuclear replication fork" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9488484; date=19700101 ||| term=phenotype, nuclear morphology defects; qualifier=deletion; cv=phenotype;db_xref=PMID:9488484; date=19700101 ||| term=phenotype, sensitive to UV; qualifier=deletion; cv=phenotype; db_xref=PMID:9488484; date=19700101 ||| term=phenotype, septation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:9488484; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "abp2" ; product "ARS binding protein Abp2" ;
chromosome2 GeneDB mRNA 3575489 3578020 . + . mRNA SPBC887.17 ; db_xref "SPD:26/26D04" ; systematic_id "SPBC887.17" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBC887.17" ; product "transmembrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 163748 165287 . - . mRNA SPBC1683.10c ; systematic_id "SPBC1683.10c" ; colour "2" ; gene "pcl1 ||| SPBC1683.10c" ; db_xref "SPD:08/08F10" ; Alias "pcl1" ; GO "GO:0005794; Golgi apparatus
GO:0015093; ferrous iron transporter activity
GO:0006874; calcium ion homeostasis
GO:0070627; ferrous iron import
GO:0006879; iron ion homeostasis
GO:0030026; manganese ion homeostasis
GO:0071421; manganese ion transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by CCAAT complex; db_xref=PMID:16963626; cv=gene_ex; date=20070516 ||| term=gene expression, promoter contains CCAAT element; db_xref=PMID:16963626; evidence=IMP; cv=gene_ex; date=20070516 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR220W; date=19700101 ||| term=name description, Pombe Ccc1- Like; cv=name_description; date=20100126 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "pcl1" ; product "ferrous iron transporter Pcl1" ;
chromosome2 GeneDB mRNA 3741441 3741776 . - . mRNA SPBC13G1.15c ; db_xref "SPD:51/51G09" ; systematic_id "SPBC13G1.15c" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC13G1.15c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4297416 4298874 . + . mRNA SPBC16A3.02c ; db_xref "SPD:15/15H01" ; systematic_id "SPBC16A3.02c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008233; peptidase activity
GO:0006627; mitochondrial protein processing
GO:0005743; mitochondrial inner membrane
GO:0005737; cytoplasm
GO:0004024; alcohol dehydrogenase activity, zinc- dependent" ; gene "SPBC16A3.02c" ; product "mitochondrial peptidase (predicted)" ; EC_number "1.6.5.5" ;
chromosome2 GeneDB mRNA 3655454 3656613 . + . mRNA SPBP8B7.13 ; systematic_id "SPBP8B7.13" ; colour "7" ; gene "SPBP8B7.13" ; db_xref "SPD:10/10G03" ; Alias "vac7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL054W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0010513; positive regulation of phosphatidylinositol biosynthetic process
GO:0000329; fungal-type vacuole membrane
GO:0071627; integral to fungal-type vacuole membrane
GO:0070772; PAS complex
GO:0000011; vacuole inheritance
GO:0045860; positive regulation of protein kinase activity" ; primary_name "vac7" ; product "Vac7 ortholog (predicted)" ;
chromosome2 GeneDB mRNA 3442168 3442719 . - . mRNA SPBC2G2.04c ; systematic_id "SPBC2G2.04c" ; colour "2" ; gene "mmf1 ||| pmf1 ||| SPBC2G2.04c" ; note "sequence possibly needs truncating to second met" ; Alias "mmf1" ; db_xref "SPD:04/04F06" ; synonym "pmf1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER057C and YIL051C; date=19700101 ||| term=complementation, functionally complements S. cerevisiae YIL051C; db_xref=PMID:12185840; cv=complementation; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12185840; date=20080227 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005759; mitochondrial matrix
GO:0000002; mitochondrial genome maintenance" ; primary_name "mmf1" ; product "YjgF family protein Mmf1" ;
chromosome2 GeneDB mRNA 1379592 1380127 . + . mRNA SPBC8D2.11 ; obsolete_name "pI054" ; db_xref "SPD:31/31C10" ; systematic_id "SPBC8D2.11" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC8D2.11" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2309787 2313020 . - . mRNA SPBC12D12.04c ; systematic_id "SPBC12D12.04c" ; colour "2" ; gene "pck2 ||| sts6 ||| pkc1 ||| SPBC12D12.04c" ; Alias "pck2" ; db_xref "SPD:34/34A04" ; synonym "sts6 ||| pkc1" ; GO "GO:0030428; cell septum
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004697; protein kinase C activity
GO:0023034; intracellular signaling cascade
GO:0050850; positive regulation of calcium- mediated signaling
GO:0006468; protein amino acid phosphorylation
GO:0090334; regulation of 1,3-beta-glucan biosynthetic process
GO:0032949; regulation of alpha-glucan biosynthetic process
; regulation of establishment and/or maintenance of cell polarity
GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8491190; date=19700101 ||| term=C1 domain; date=19700101 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YBL105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target of Rho1; db_xref=PMID:10504305; date=20100825 ||| term=target of Rho2; db_xref=PMID:10504305; date=20100825" ; primary_name "pck2" ; product "protein kinase C (PKC)-like Pck2" ; EC_number "2.7.1.-" ;
chromosome2 GeneDB mRNA 509972 512831 . - . mRNA SPBC1685.07c ; systematic_id "SPBC1685.07c" ; colour "2" ; gene "SPBC1685.07c" ; Alias "avt5" ; obsolete_name "avt8" ; db_xref "SPD:20/20B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YER119C and YBL089W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sporulation defects; qualifier=triple_mutant; allele=SPAC3H1.09|SPBC16H5.07|SPAC2G11. 13|leucine_auxotroph; db_xref=PMID:19778961; date=20091126" ; GO "GO:0005290; L-histidine transmembrane transporter activity
GO:0005302; L-tyrosine transmembrane transporter activity
GO:0005313; L-glutamate transmembrane transporter activity
GO:0015181; arginine transmembrane transporter activity
GO:0015189; L-lysine transmembrane transporter activity
GO:0006995; cellular response to nitrogen starvation
GO:0000329; fungal type vacuolar membrane
GO:0071627; integral to fungal-type vacuolar membrane
GO:0032975; amino acid import into vacuole" ; primary_name "avt5" ; product "vacuolar amino acid efflux transporter Avt5" ;
chromosome2 GeneDB mRNA 3502339 3505693 . + . mRNA SPBC1105.01 ; systematic_id "SPBC1105.01" ; colour "7" ; gene "SPBPB7E8.03 ||| SPBC1105.01 ||| rrp12" ; Alias "rrp12" ; db_xref "SPD:49/49F08" ; synonym "SPBPB7E8.03" ; GO "GO:0005634; nucleus
GO:0030490; processing of 20S pre-rRNA" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; evidence=ISS; db_xref=PMID:14729571; date=19700101 ||| term=related to S. pombe SPAPB8E5.07c; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20080312 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rrp12" ; product "rRNA processing protein Rrp12-like (predicted)" ;
chromosome2 GeneDB mRNA 1195990 1197691 . + . mRNA SPBC4.06 ; db_xref "SPD:21/21E02" ; systematic_id "SPBC4.06" ; colour "10" ; GO "GO:0003993; acid phosphatase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC4.06" ; product "acid phosphatase (predicted)" ;
chromosome2 GeneDB mRNA 1207040 1208140 . + . mRNA SPBC725.03 ; db_xref "SPD:09/09F01" ; systematic_id "SPBC725.03" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR017W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC725.03" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 3662735 3665346 . - . mRNA SPBP8B7.16c ; systematic_id "SPBP8B7.16c" ; colour "2" ; gene "dbp2 ||| SPBP8B7.16c" ; note "large 3' intron like S. cerevisiae DBP2" ; Alias "dbp2" ; db_xref "SPD:40/40H08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YNL112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human DDX5 and DDX17 ortholog; date=20091118 ||| term=disease associated, cancer; date=20100217" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0006364; rRNA processing" ; primary_name "dbp2" ; product "ATP-dependent RNA helicase Dbp2" ;
chromosome2 GeneDB mRNA 499374 500512 . + . mRNA SPBC1685.03 ; systematic_id "SPBC1685.03" ; colour "7" ; gene "sec11 ||| SPBC1685.03" ; Alias "sec11" ; db_xref "SPD:09/09H03" ; GO "GO:0005787; signal peptidase complex
; peptidase activity
GO:0045047; protein targeting to ER
GO:0006465; signal peptide processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YIR022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec11" ; product "signal peptidase subunit Sec11 (predicted)" ;
chromosome2 GeneDB mRNA 1416205 1417863 . + . mRNA SPBC17A3.08 ; systematic_id "SPBC17A3.08" ; colour "7" ; gene "SPBC17A3.08" ; obsolete_name "pi038" ; db_xref "SPD:32/32G09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008296; 3'-5'-exodeoxyribonuclease activity
GO:0006308; DNA catabolic process" ; product "TatD homolog (predicted)" ;
chromosome2 GeneDB mRNA 2327488 2328418 . + . mRNA SPBC24C6.05 ; systematic_id "SPBC24C6.05" ; colour "7" ; gene "sec28 ||| SPBC24C6.05" ; Alias "sec28" ; db_xref "SPD:12/12F03" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030126; COPI vesicle coat
GO:0006886; intracellular protein transport
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YIL076W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec28" ; product "coatomer epsilon subunit (predicted)" ;
chromosome2 GeneDB mRNA 3219420 3220571 . + . mRNA SPBC21.04 ; systematic_id "SPBC21.04" ; colour "2" ; gene "med8 ||| sep15 ||| SPBC21.04" ; Alias "med8" ; db_xref "SPD:43/43A10" ; synonym "sep15" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0016592; mediator complex
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0006366; transcription from RNA polymerase II promoter
; protein binding
GO:0000920; cell separation during cytokinesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; cv=phenotype; db_xref=PMID:11191205; date=19700101 ||| term=phenotype, pleiotropic effects; cv=phenotype; date=19700101 ||| term=phenotype, septation defects; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=phenotype, septation defects; allele=med8-del-107-200; db_xref=PMID:19720063; cv=phenotype; date=20091204 ||| term=phenotype, septation defects; allele=sep15-598; db_xref=PMID:11191205; cv=phenotype; date=20091204 ||| term=phenotype, sensitive to zinc; db_xref=PMID:19720063; allele=med8-del-107-200; cv=phenotype; date=20091204 ||| term=phenotype, sensitive to caffeine; db_xref=PMID:19720063; allele=med8-del-107-200; cv=phenotype; date=20091204 ||| term=phenotype, cell morphology, elongated and multiseptate; allele=sep15-598; db_xref=PMID:11191205; date=20100731 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17922236; date=20090110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15829570; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=orthologous to S. cerevisiae YBR193C; date=19700101" ; primary_name "med8" ; product "mediator complex subunit Med8" ;
chromosome2 GeneDB mRNA 2665629 2667395 . - . mRNA SPBC3E7.05c ; db_xref "SPD:35/35G02" ; systematic_id "SPBC3E7.05c" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005743; mitochondrial inner membrane
GO:0042407; cristae formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR016W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=human IMMT ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC3E7.05c" ; product "human mitofilin ortholog (predicted)" ;
chromosome2 GeneDB mRNA 2653252 2659412 . - . mRNA SPBC3E7.01 ; systematic_id "SPBC3E7.01" ; colour "2" ; gene "fab1 ||| SPBC6B1.11c ||| SPBC3E7.01 ||| ste12" ; Alias "fab1" ; db_xref "SPD:31/31B10" ; synonym "ste12 ||| SPBC6B1.11c" ; GO "GO:0000329; vacuolar membrane
GO:0000285; 1-phosphatidylinositol-3-phosphate 5- kinase activity
GO:0000285; 1-phosphatidylinositol-3-phosphate 5- kinase activity
GO:0005524; ATP binding
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0006995; cellular response to nitrogen starvation
GO:0006886; intracellular protein transport
GO:0000750; pheromone-dependent signal transduction involved in conjugation with cellular fusion
GO:0046488; phosphatidylinositol metabolic process
GO:0007033; vacuole organization and biogenesis
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-FYVE type; date=19700101 ||| term=gene expression, expressed in response to nitrogen starvation; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YFR019W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11895483; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sterile; date=20101013 ||| term=name description, STErile; date=20101013" ; primary_name "fab1" ; product "1-phosphatidylinositol-3-phosphate 5-kinase Fab1" ; EC_number "2.7.1.-" ;
chromosome2 GeneDB mRNA 3987658 3989528 . - . mRNA SPBC32C12.03c ; systematic_id "SPBC32C12.03c" ; colour "2" ; gene "ppk25 ||| SPBC32C12.03c" ; Alias "ppk25" ; db_xref "SPD:20/20D05" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk25" ; product "serine/threonine protein kinase Ppk25 (predicted)" ;
chromosome2 GeneDB mRNA 3041498 3043403 . + . mRNA SPBC13E7.02 ; systematic_id "SPBC13E7.02" ; colour "2" ; gene "cwf24 ||| SPBC13E7.02" ; note "domain combination does not usually co-occur, check sequence" ; Alias "cwf24" ; db_xref "SPD:45/45C09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YLR323C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008080; N-acetyltransferase activity
GO:0005681; spliceosome complex
GO:0004842; ubiquitin-protein ligase activity
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0016074; snoRNA metabolic biogenesis" ; primary_name "cwf24" ; product "zf-C3HC4 type (RING finger)/GCN5-related N acetyltransferase fusion protein" ;
chromosome2 GeneDB mRNA 2392551 2393103 . - . mRNA SPBC36B7.06c ; systematic_id "SPBC36B7.06c" ; colour "8" ; gene "SPBC36B7.06c ||| mug20" ; db_xref "SPD:31/31E09" ; Alias "mug20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug20" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1793928 1794755 . + . mRNA SPBC18H10.14 ; systematic_id "SPBC18H10.14" ; colour "7" ; gene "rps1601 ||| rps16-1 ||| SPBC18H10.14" ; Alias "rps1601" ; synonym "rps16-1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL083C and YMR143W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; primary_name "rps1601" ; product "40S ribosomal protein S16 (predicted)" ;
chromosome2 GeneDB mRNA 4512231 4512620 . + . mRNA SPBCPT2R1.03 ; db_xref "SPD:52/52C05" ; systematic_id "SPBCPT2R1.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPBCPT2R1.03" ; product "hypothetical protein" ;
chromosome2 GeneDB mRNA 2794874 2796196 . + . mRNA SPBC32F12.06 ; systematic_id "SPBC32F12.06" ; colour "2" ; gene "pch1 ||| SPBC32F12.06" ; db_xref "SPD:40/40C12" ; Alias "pch1" ; GO "GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0005515; protein binding
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0070816; phosphorylation of RNA polymerase II C- terminal domain
GO:0006468; protein amino acid phosphorylation
GO:0010551; regulation of specific transcription from RNA polymaerase II promoter
GO:0008024; positive transcription elongation factor comblex b
GO:0006370; mRNA capping
GO:0034243; regulation of elongation from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YLR226W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pch1" ; product "P-TEFB associated cyclin, cyclin T Pch1" ;
chromosome2 GeneDB mRNA 1591154 1596774 . + . mRNA SPBC28F2.12 ; systematic_id "SPBC28F2.12" ; colour "2" ; gene "rpb1 ||| SPBC28F2.12" ; Alias "rpb1" ; db_xref "SPD:41/41B01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL140C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; residue=CTD,Ser2; cv=pt_mod; evidence=IDA; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; residue=CTD,Ser5; cv=pt_mod; evidence=IDA; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; residue=CTD,Ser2|CTD,Ser5; cv=pt_mod; evidence=IDA; db_xref=PMID:19328067; date=20090712 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target of lsk1/Lsc1 complex; residue=Ser2; db_xref=PMID:17502918; date=20100222 ||| term=target of Lsk1; db_xref=PMID:19328067; residue=CTD,Ser2; date=20100923 ||| term=target of Msc6; qualifier=phosphorylated_by; db_xref=PMID:19328067; residue=CTD,Ser5; date=20100923 ||| term=target of Cdk9; qualifier=phosphorylated_by; db_xref=PMID:19328067; residue=CTD,Ser2|CTD,Ser5; date=20100923" ; GO "GO:0006366; transcription from RNA polymerase II promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0003677; DNA binding
GO:0005665; DNA-directed RNA polymerase II, core complex
GO:0005515; protein binding
GO:0005515; protein binding" ; primary_name "rpb1" ; product "RNA polymerase II large subunit Rpb1" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB mRNA 1859878 1861253 . - . mRNA SPBC3H7.13 ; db_xref "SPD:12/12E02" ; systematic_id "SPBC3H7.13" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR238W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC3H7.13" ; product "FHA domain protein Far10 (predicted)" ;
chromosome2 GeneDB mRNA 4222780 4223936 . + . mRNA SPBC16G5.06 ; db_xref "SPD:08/08B01" ; systematic_id "SPBC16G5.06" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC16G5.06" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2730520 2732336 . - . mRNA SPBC18A7.02c ; db_xref "SPD:23/23G12" ; systematic_id "SPBC18A7.02c" ; colour "7" ; GO "GO:0004872; receptor activity
GO:0007166; cell surface receptor linked signal transduction
GO:0005887; integral to plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; qualifier=inferred_from_context; date=19700101 ||| term=orthologous to S. cerevisiae YKL039W and YHL017W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC18A7.02c" ; product "seven transmembrane receptor-like protein (predicted)" ;
chromosome2 GeneDB mRNA 4030555 4031385 . + . mRNA SPBC215.04 ; systematic_id "SPBC215.04" ; colour "2" ; gene "git11 ||| SPBC215.04" ; Alias "git11" ; db_xref "SPD:31/31C05" ; GO "GO:0045014; negative regulation of transcription by glucose
GO:0019933; cAMP-mediated signaling
GO:0005886; plasma membrane
GO:0005515; protein binding
GO:0005834; heterotrimeric G-protein complex
GO:0007189; G-protein signaling, adenylate cyclase activating pathway
GO:0023052; signalling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505 ||| term=species distribution, conserved in Fungi; date=20100919 ||| term=species distribution, conserved in Eukaryotes; date=20100919 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100919 ||| term=warning, is not functional ortholog of S. cerevisiae YJR086W; date=20100919 ||| term=orthologous to S. cerevisiae YJR086W; date=20100919" ; primary_name "git11" ; product "heterotrimeric G protein gamma subunit Git11" ;
chromosome2 GeneDB mRNA 3918576 3919569 . - . mRNA SPBC1604.07 ; systematic_id "SPBC1604.07" ; colour "7" ; gene "atp4 ||| SPBC1604.07" ; Alias "atp4" ; db_xref "SPD:09/09F12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0000274; proton-transporting ATP synthase, stator stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0016021; integral to membrane
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; primary_name "atp4" ; product "F0-ATPase subunit (predicted)" ; EC_number "3.6.3.14" ;
chromosome2 GeneDB mRNA 3138405 3140108 . - . mRNA SPBC4C3.03 ; db_xref "KEGG:MAP00260; ||| SPD:15/15B06" ; systematic_id "SPBC4C3.03" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR025W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009088; threonine biosynthesis
GO:0006555; methionine metabolism
GO:0004413; homoserine kinase activity" ; gene "SPBC4C3.03" ; product "homoserine kinase (predicted)" ; EC_number "2.7.1.39" ;
chromosome2 GeneDB mRNA 3062064 3063902 . + . mRNA SPBC30D10.17c ; systematic_id "SPBC30D10.17c" ; colour "7" ; gene "smi1 ||| SPBC30D10.17c" ; note "not glucan synthase EC 2.4.1.34 as reported in SW:GS1_NEUCR" ; Alias "smi1" ; db_xref "SPD:24/24E11" ; GO "GO:0032995; regulation of fungal-type cell wall biogenesis
GO:0007346; regulation of mitotic cell cycle
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR229C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "smi1" ; product "cell wall biosynthesis/ cell cycle regulator (predicted)" ;
chromosome2 GeneDB mRNA 4178399 4180542 . - . mRNA SPBC14F5.11c ; systematic_id "SPBC14F5.11c" ; colour "7" ; gene "SPBC14F5.11c ||| mug186" ; Alias "mug186" ; db_xref "SPD:26/26D06" ; GO "GO:0035091; phosphoinositide binding
GO:0042147; retrograde transport, endosome to Golgi
GO:0005768; endosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR425W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug186" ; product "sorting nexin Snx41 (predicted)" ;
chromosome2 GeneDB mRNA 1391456 1393012 . - . mRNA SPBC8D2.18c ; systematic_id "SPBC8D2.18c" ; colour "7" ; gene "SPBC8D2.18c" ; note "This gene is not the gene described in Abe and Shimoda (2000), Genetics 154 1497-1508. They describe it as ORF SPBC8D2.18c, and as a kinase homologous to S. cerevisiae IME2 and S. pombe pit1.mde3 but the gene described in this paper corresponds to SPC8D2.19" ; db_xref "SPD:32/32G11" ; GO "GO:0004013; adenosylhomocysteinase activity
GO:0006555; methionine metabolism
GO:0016259; selenocysteine metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "adenosylhomocysteinase (predicted)" ; EC_number "3.3.1.1" ;
chromosome2 GeneDB mRNA 660285 661388 . - . mRNA SPBC947.07 ; db_xref "SPD:08/08C03" ; systematic_id "SPBC947.07" ; colour "7" ; GO "GO:0042273; ribosomal large subunit biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=surfeit locus (SURF40 family); date=19700101 ||| term=orthologous to S. cerevisiae YKL082C; qualifier=C_term; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC947.07" ; product "ribosome biogenesis protein Rrp14-C (predicted)" ;
chromosome2 GeneDB mRNA 1706975 1708944 . + . mRNA SPBC2F12.14c ; systematic_id "SPBC2F12.14c" ; colour "7" ; gene "gua1 ||| SPBC2F12.14c" ; Alias "gua1" ; db_xref "SPD:37/37A02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR216W and YLR432W and YML056C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003938; IMP dehydrogenase activity
GO:0006177; GMP biosynthesis" ; primary_name "gua1" ; product "IMP dehydrogenase Gua1 (predicted)" ; EC_number "1.1.1.205" ;
chromosome2 GeneDB mRNA 3234645 3235696 . - . mRNA SPBC19F8.04c ; db_xref "SPD:08/08A12" ; systematic_id "SPBC19F8.04c" ; colour "10" ; GO "GO:0004518; nuclease activity
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL085W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20090706" ; gene "SPBC19F8.04c" ; product "nuclease" ;
chromosome2 GeneDB mRNA 1478081 1486062 . - . mRNA SPBC32H8.13c ; systematic_id "SPBC32H8.13c" ; colour "2" ; gene "mok12 ||| SPBC32H8.13c" ; Alias "mok12" ; obsolete_name "SPACTOKYO_453.25c" ; db_xref "SPD:49/49H11" ; GO "GO:0005619; fungal-type spore wall
GO:0005628; prospore membrane
GO:0047657; alpha-1,3-glucan synthase activity
GO:0004556; alpha-amylase activity
GO:0070596; alpha-1,3-glucan biosynthetic process
GO:0030979; alpha-glucan biosynthetic process
GO:0030476; ascospore wall assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20070309 ||| term=similar to S. pombe Mok1 and Mok11 and Mok13 and Mok14; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:16420355; date=20080430 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mok12" ; product "alpha-1,3-glucan synthase Mok12" ; EC_number "2.4.1.183" ;
chromosome2 GeneDB mRNA 3197331 3199186 . - . mRNA SPBC776.12c ; systematic_id "SPBC776.12c" ; colour "2" ; gene "hsk1 ||| SPBC776.12c" ; Alias "hsk1" ; db_xref "SPD:40/40F05" ; GO "GO:0031431; Dbf4-dependent protein kinase complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0004674; protein serine/threonine kinase activity
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0007533; mating type switching
GO:2000045; regulation of G1/S transition of mitotic cell cycle
; regulation of centromeric sister chromatid cohesion
GO:0043111; replication fork blocking
GO:0048478; replication fork protection" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7621824; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:11027263; date=20100727 ||| term=phenotype, nuclear morphology defects; db_xref=PMID:11027263; date=20100727 ||| term=orthologous to S. cerevisiae YDL017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Dfp1; qualifier=activated_by; db_xref=PMID:10411894; date=20100415 ||| term=target is Swi6; qualifier=phosphorylates; db_xref=PMID:14625560; date=20100820 ||| term=target is Mcm2; qualifier=phosphorylates; db_xref=PMID:9705352; date=20100820" ; primary_name "hsk1" ; product "Dbf4(Dfp1)-dependent protein kinase Hsk1" ;
chromosome2 GeneDB mRNA 2082487 2083485 . - . mRNA SPBC18E5.05c ; db_xref "SPD:14/14F06" ; systematic_id "SPBC18E5.05c" ; colour "7" ; GO "GO:0006400; tRNA modification
GO:0033588; Elongator holoenzyme complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR187W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC18E5.05c" ; product "elongator complex subunit Iki1 (predicted)" ;
chromosome2 GeneDB mRNA 940734 942381 . - . mRNA SPBC646.10c ; db_xref "SPD:24/24B06" ; systematic_id "SPBC646.10c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing
GO:0030532; small nuclear ribonucleoprotein complex
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR197W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC646.10c" ; product "U3 snoRNP protein Nop56 (predicted)" ;
chromosome2 GeneDB mRNA 2052592 2054028 . + . mRNA SPBC29A3.08 ; systematic_id "SPBC29A3.08" ; colour "7" ; gene "pof4 ||| SPBC29A3.08" ; note "may not be an F-box protein" ; Alias "pof4" ; db_xref "SPD:06/06F06" ; GO "GO:0008023; transcription elongation factor complex
GO:0005515; protein binding
GO:0003711; transcriptional elongation regulator activity
GO:0006368; RNA elongation from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL230C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090814" ; primary_name "pof4" ; product "elongin-A, F-box protein Pof4 (predicted)" ;
chromosome2 GeneDB mRNA 3966592 3968191 . - . mRNA SPBC26H8.08c ; systematic_id "SPBC26H8.08c" ; colour "2" ; gene "grn1 ||| SPBC26H8.08c" ; Alias "grn1" ; db_xref "SPD:44/44G01" ; GO "GO:0005730; nucleolus
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0003723; RNA binding
GO:0006364; 35S primary transcript processing
GO:0051301; cell division
GO:0040010; positive regulation of growth rate
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, NLS; cv=sequence_feature; qualifier=predicted; evidence=ISS; db_xref=PMID:16251348; date=20060328 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16251348; date=20060328 ||| term=complementation, functionally complemented by human GNL3L; db_xref=PMID:16251348; cv=complementation; date=20060328 ||| term=orthologous to S. cerevisiae YER006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "grn1" ; product "GTPase Grn1" ;
chromosome2 GeneDB mRNA 409487 410640 . + . mRNA SPBC106.16 ; systematic_id "SPBC106.16" ; colour "2" ; gene "pre6 ||| SPBC106.16" ; Alias "pre6" ; db_xref "SPD:13/13E11" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL038W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pre6" ; product "20S proteasome component alpha 4 Pre6" ; EC_number "3.4.25.1" ;
chromosome2 GeneDB mRNA 4082279 4082644 . - . mRNA SPBC1347.14c ; db_xref "SPD:52/52E09" ; systematic_id "SPBC1347.14c" ; colour "6" ; gene "SPBC1347.14c" ; product "dubious" ;
chromosome2 GeneDB mRNA 2673019 2676513 . - . mRNA SPBC3E7.08c ; systematic_id "SPBC3E7.08c" ; colour "2" ; gene "rad13 ||| SPBC3E7.08c" ; Alias "rad13" ; db_xref "SPD:34/34A07" ; GO "GO:0006295; nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006289; nucleotide-excision repair" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=XP-G family; date=19700101 ||| term=orthologous to S. cerevisiae YGR258C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Xeroderma pigmentosum; date=20090908 ||| term=disease associated, cancer; date=20090908 ||| term=human ERCC5 ortholog; date=20100217" ; primary_name "rad13" ; product "DNA repair nuclease Rad13" ;
chromosome2 GeneDB mRNA 1197802 1199411 . - . mRNA SPBC4.07c ; systematic_id "SPBC4.07c" ; colour "2" ; gene "rpt2 ||| mts2 ||| SPBC4.07c" ; Alias "rpt2" ; db_xref "SPD:40/40E11" ; synonym "mts2" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0005515; protein binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDL007W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpt2" ; product "19S proteasome regulatory subunit Rpt2" ;
chromosome2 GeneDB mRNA 2062472 2066110 . - . mRNA SPBC29A3.14c ; systematic_id "SPBC29A3.14c" ; colour "2" ; gene "trt1 ||| SPBC29A3.14c" ; Alias "trt1" ; db_xref "SPD:41/41A09" ; GO "GO:0000781; chromosome, telomeric region
GO:0000228; nuclear chromosome
GO:0000333; telomerase catalytic core complex
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0003721; telomeric template RNA reverse transcriptase activity
GO:0006278; RNA-dependent DNA replication
GO:0007004; telomere maintenance via telomerase" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9252327; qualifier=deletion; date=20100708 ||| term=orthologous to S. cerevisiae YLR318W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15642092; date=20090110" ; primary_name "trt1" ; product "telomerase reverse transcriptase 1 protein Trt1" ;
chromosome2 GeneDB mRNA 3263306 3266773 . + . mRNA SPBC25H2.11c ; systematic_id "SPBC25H2.11c" ; colour "2" ; gene "SPBC25H2.11c ||| spt7" ; note "exon added doesn't improve homology (insert in pairwise align, possible alternative splice)" ; Alias "spt7" ; db_xref "SPD:30/30D05" ; GO "GO:0006366; transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0000790; nuclear chromatin
GO:0016573; histone acetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human KAT2A ortholog; date=20110113 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "spt7" ; product "SAGA complex bromodomain subunit Spt7" ;
chromosome2 GeneDB mRNA 2258814 2261031 . + . mRNA SPBC21H7.04 ; systematic_id "SPBC21H7.04" ; colour "7" ; gene "SPBC21H7.04 ||| dbp7" ; Alias "dbp7" ; db_xref "SPD:37/37D10" ; GO "GO:0005730; nucleolus
GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YKR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dbp7" ; product "ATP-dependent RNA helicase Dbp7 (predicted)" ;
chromosome2 GeneDB mRNA 4434256 4435800 . - . mRNA SPBC8E4.03 ; db_xref "SPD:19/19H03" ; systematic_id "SPBC8E4.03" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=similar to S. pombe SPAPB24D3.03 and SPAC11D3.09; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0019627; urea metabolism
GO:0008783; agmatinase activity
GO:0030145; manganese ion binding" ; gene "SPBC8E4.03" ; product "agmatinase 2 (predicted)" ; EC_number "3.5.3.11" ;
chromosome2 GeneDB mRNA 597310 599334 . + . mRNA SPBC839.02 ; db_xref "SPD:35/35F06" ; systematic_id "SPBC839.02" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005509; calcium ion binding
GO:0070086; ubiquitin-dependent endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=orthologous to S. cerevisiae YJL084C and YKR021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC839.02" ; product "arrestin Aly1 related, implicated in endocytosis" ;
chromosome2 GeneDB mRNA 1262315 1263772 . - . mRNA SPBC31A8.01c ; systematic_id "SPBC31A8.01c" ; colour "2" ; db_xref "SPD:32/32B04" ; Alias "rtn1" ; synonym "cwl1 ||| SPBC651.13c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cytokinesis defects; db_xref=PMID:20434336; cv=phenotype; date=20100517 ||| term=phenotype, cell wall defects; qualifier=overexpression; db_xref=PMID:8873452; cv=phenotype; date=20100517 ||| term=orthologous to S. cerevisiae YDR233C and YDL204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; GO "GO:0032541; cortical endoplasmic reticulum
GO:0032153; cell division site
GO:0005783; endoplasmic reticulum
GO:0005635; nuclear envelope
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
; regulation of site selection involved in cell cycle cytokinesis
GO:0071786; endoplasmic reticulum tubular network organization" ; primary_name "rtn1" ; product "reticulon-like protein Rtn1" ;
chromosome2 GeneDB mRNA 2152147 2154335 . - . mRNA SPBC1711.10c ; systematic_id "SPBC1711.10c" ; colour "7" ; gene "npl4 ||| SPBC1711.10c" ; Alias "npl4" ; db_xref "SPD:45/45G03" ; GO "GO:0030433; ER-associated protein catabolism
GO:0005783; endoplasmic reticulum
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0034098; Cdc48p-Npl4p-Ufd1p AAA ATPase complex
GO:0042175; nuclear envelope-endoplasmic reticulum network" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR170C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "npl4" ; product "Cdc48-Npl4-Ufd1 complex component Npl4 (predicted)" ;
chromosome2 GeneDB mRNA 551222 555291 . - . mRNA SPBC354.05c ; systematic_id "SPBC354.05c" ; colour "7" ; gene "sre2 ||| SPBC354.05c" ; Alias "sre2" ; db_xref "SPD:38/38D04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070115 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0003677; DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005634; nucleus" ; primary_name "sre2" ; product "membrane-tethered transcription factor (predicted)" ; reserved_name "sre2" ;
chromosome2 GeneDB mRNA 806148 809337 . + . mRNA SPBC530.08 ; db_xref "SPD:28/28G07" ; systematic_id "SPBC530.08" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=misc functional group, membrane- tethered transcription factor; qualifier=predicted; db_xref=PMID:11790253; cv=m_f_g; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC530.08" ; product "membrane-tethered transcription factor (predicted)" ;
chromosome2 GeneDB mRNA 1091046 1094733 . - . mRNA SPBC1734.16c ; systematic_id "SPBC1734.16c" ; colour "2" ; gene "pst3 ||| SPBC1734.16c" ; Alias "pst3" ; db_xref "SPD:30/30E08" ; GO "GO:0016575; histone deacetylation
GO:0006355; regulation of transcription, DNA- dependent
GO:0000790; nuclear chromatin
GO:0006342; chromatin silencing
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling
GO:0006303; double-strand break repair via nonhomologous end joining" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL004W; date=19700101 ||| term=SIN3 family co-repressor; date=20071031 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pst3" ; product "SIN3 family co-repressor Pst3" ;
chromosome2 GeneDB mRNA 3133293 3136040 . - . mRNA SPBC4C3.12 ; systematic_id "SPBC4C3.12" ; colour "2" ; gene "sep1 ||| SPBC4C3.12" ; Alias "sep1" ; db_xref "SPD:40/40G08" ; obsolete_name "SPBC4C3.05" ; GO "GO:0005634; nucleus
GO:0005667; transcription factor complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0010590; regulation of cell separation during cytokinesis
GO:0045896; regulation of transcription, mitotic
GO:0045896; regulation of transcription, mitotic" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=fork head domain; date=19700101 ||| term=orthologous to S. cerevisiae YCR065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15195092; date=20090110 ||| term=DNA binding specificity, binds Forkhead 5'-TTT[G/A]TTTACA-3'; db_xref=PMID:15195092; date=20100302 ||| term=gene expression, transcriptionally regulates ace2; db_xref=PMID:15509866; date=20100825" ; primary_name "sep1" ; product "fork head transcription factor Sep1" ;
chromosome2 GeneDB mRNA 1498545 1499813 . + . mRNA SPBC11B10.08 ; obsolete_name "pi003 ||| SPACTOKYO_453.33c" ; db_xref "SPD:41/41D09" ; systematic_id "SPBC11B10.08" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL010C; date=19700101 ||| term=WW domain; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC11B10.08" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 1581869 1584287 . - . mRNA SPBC28F2.08c ; db_xref "SPD:37/37E08" ; systematic_id "SPBC28F2.08c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0030433; ER-associated protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SEL1 repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR207W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC28F2.08c" ; product "HRD ubiquitin ligase complex subunit (predicted)" ;
chromosome2 GeneDB mRNA 2068155 2068893 . + . mRNA SPBC29A3.16 ; systematic_id "SPBC29A3.16" ; colour "7" ; gene "SPBC29A3.16 ||| rrs1" ; Alias "rrs1" ; db_xref "SPD:04/04H05" ; GO "GO:0005634; nucleus
GO:0006364; rRNA processing
GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR294W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rrs1" ; product "ribosome biogenesis protein Rrs1 (predicted)" ;
chromosome2 GeneDB mRNA 3559396 3560788 . + . mRNA SPBC887.11 ; systematic_id "SPBC887.11" ; colour "7" ; gene "pus2 ||| SPBC887.11" ; Alias "pus2" ; db_xref "SPD:44/44E01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL212C and YGL063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031119; tRNA pseudouridine synthesis
GO:0005634; nucleus
GO:0009982; pseudouridine synthase activity" ; primary_name "pus2" ; product "tRNA pseudouridine synthase Pus2 (predicted)" ; EC_number "4.2.1.70" ;
chromosome2 GeneDB mRNA 1505171 1506797 . + . mRNA SPBC1215.01 ; systematic_id "SPBC1215.01" ; colour "7" ; gene "SPBC1215.01 ||| shy1" ; db_xref "SPD:13/13E04" ; Alias "shy1" ; GO "GO:0009060; aerobic respiration
GO:0005743; mitochondrial inner membrane
GO:0008535; cytochrome c oxidase complex assembly
GO:0051082; unfolded protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=surfeit locus (SURF40 family); date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Leigh syndrome; date=20091218 ||| term=disease associated, neurological disorders; date=20091218" ; primary_name "shy1" ; product "SURF-family protein Shy1 (predicted)" ;
chromosome2 GeneDB mRNA 2008119 2011896 . + . mRNA SPBP23A10.07 ; systematic_id "SPBP23A10.07" ; colour "2" ; gene "rpa2 ||| SPBP23A10.07" ; Alias "rpa2" ; db_xref "SPD:48/48E06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR010C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090330" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0006360; transcription from RNA polymerase I promoter
GO:0005736; DNA-directed RNA polymerase I complex" ; primary_name "rpa2" ; product "DNA-directed RNA polymerase I complex subunit Rpa2" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB mRNA 70156 71310 . + . mRNA SPBPB21E7.07 ; systematic_id "SPBPB21E7.07" ; colour "2" ; gene "aes1 ||| SPBPB21E7.07" ; Alias "aes1" ; db_xref "SPD:52/52A08" ; synonym "SPAPB21E7.07" ; GO "GO:0010629; negative regulation of gene expression" ; controlled_curation "term=orthologous to S. cerevisiae YHR029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "aes1" ; product "enhancer of RNA-mediated gene silencing" ;
chromosome2 GeneDB mRNA 4135981 4139294 . - . mRNA SPBC1861.04c ; db_xref "SPD:48/48A12" ; systematic_id "SPBC1861.04c" ; colour "7" ; GO "GO:0005688; snRNP U6
GO:0017069; snRNA binding
GO:0000244; assembly of spliceosomal tri-snRNP
GO:0000245; spliceosome assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR268C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC1861.04c" ; product "RNA-binding protein Prp24 (predicted)" ;
chromosome2 GeneDB mRNA 3774312 3777393 . - . mRNA SPBC31F10.13c ; systematic_id "SPBC31F10.13c" ; colour "2" ; gene "hip1 ||| SPBC31F10.13c" ; Alias "hip1" ; db_xref "SPD:47/47F10" ; synonym "hir1" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0003714; transcription corepressor activity
GO:0006336; DNA replication-independent nucleosome assembly
GO:0006995; cellular response to nitrogen starvation
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0000070; mitotic sister chromatid segregation
GO:0007070; negative regulation of transcription from RNA polymerase II promoter, mitotic
GO:0007346; regulation of progression through mitotic cell cycle" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19620282; date=20091123 ||| term=name description, HIRA Interacting Protein; cv=name_description; date=20100126 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|low_penetrance; db_xref=PMID:15121850; date=20100923" ; primary_name "hip1" ; product "hira protein, histone chaperone Hip1" ;
chromosome2 GeneDB mRNA 254715 257138 . + . mRNA SPBC800.03 ; systematic_id "SPBC800.03" ; colour "2" ; db_xref "SPD:37/37C08" ; Alias "clr3" ; GO "GO:0016581; NuRD complex
GO:0005721; centric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0000790; nuclear chromatin
GO:0030874; nucleolar chromatin
GO:0033553; rDNA heterochromatin
GO:0031933; telomeric heterochromatin
GO:0031078; histone deacetylase activity (H3-K14 specific)
GO:0004407; histone deacetylase activity
GO:0004407; histone deacetylase activity
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0016575; histone deacetylation
GO:0035391; maintenance of chromatin silencing at silent mating-type cassette
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0016584; nucleosome spacing
GO:0031060; regulation of histone methylation
GO:0006357; regulation of transcription from polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL021W; date=19700101 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16079916; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=name description, cryptic loci regulator; cv=name_description; date=20100126" ; primary_name "clr3" ; product "histone deacetylase (class II) Clr3" ;
chromosome2 GeneDB mRNA 2489034 2490998 . - . mRNA SPBC557.03c ; systematic_id "SPBC557.03c" ; colour "2" ; gene "pim1 ||| dcd1 ||| ptr2 ||| SPBC557.03c" ; Alias "pim1" ; db_xref "SPD:40/40G01" ; synonym "dcd1 ||| ptr2" ; GO "GO:0000790; nuclear chromatin
GO:0005087; Ran guanyl-nucleotide exchange factor activity
GO:0031291; Ran protein signal transduction
GO:0006406; mRNA export from nucleus
GO:0007093; mitotic cell cycle checkpoint
GO:0006407; rRNA export from nucleus
GO:0060623; regulation of chromosome condensation
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0007346; regulation of progression through mitotic cell cycle
GO:0007264; small GTPase mediated signal transduction
GO:0090307; spindle assembly involved in mitosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL097W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Spi1; db_xref=PMID:8887664; date=20100825" ; primary_name "pim1" ; product "Ran GDP/GTP exchange factor" ;
chromosome2 GeneDB mRNA 4039191 4041170 . - . mRNA SPBC215.07c ; db_xref "SPD:35/35E04" ; systematic_id "SPBC215.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR455W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005634; nucleus
GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0034770; histone H4-K20 methylation
GO:0035064; methylated histone residue binding" ; gene "SPBC215.07c ||| pdp2" ; product "PWWP domain protein (predicted)" ; reserved_name "pdp2" ;
chromosome2 GeneDB mRNA 3055411 3056566 . + . mRNA SPBC13E7.09 ; systematic_id "SPBC13E7.09" ; colour "2" ; gene "vrp1 ||| SPBC13E7.09" ; Alias "vrp1" ; db_xref "SPD:14/14B09" ; GO "GO:0030479; actin cortical patch
GO:0051286; cell tip
GO:0031097; medial ring
GO:0003779; actin binding
GO:0005515; protein binding
GO:0000147; actin cortical patch assembly
GO:0007015; actin filament organization
GO:0051127; positive regulation of actin nucleation
GO:0045010; actin nucleation
GO:0045010; actin nucleation
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Wiskott- Aldrich syndrome; date=20060809 ||| term=orthologous to S. cerevisiae YLR337C; date=19700101 ||| term=human WIPF1 and WIPF2 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vrp1" ; product "verprolin" ;
chromosome2 GeneDB mRNA 2952727 2955417 . - . mRNA SPBC2A9.04c ; db_xref "SPD:38/38A09" ; systematic_id "SPBC2A9.04c" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0005634; nucleus
GO:0006325; establishment and/or maintenance of chromatin architecture
GO:0006342; chromatin silencing
GO:0006511; ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDR143C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC2A9.04c" ; product "sir antagonist ortholog (predicted)" ;
chromosome2 GeneDB mRNA 224303 226239 . + . mRNA SPBC660.15 ; db_xref "SPD:26/26F08" ; systematic_id "SPBC660.15" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005849; mRNA cleavage factor complex
GO:0005634; nucleus
GO:0003723; RNA binding
GO:0003730; mRNA 3'-UTR binding
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YOL123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human MSI2 ortholog; date=20100217" ; gene "SPBC660.15" ; product "mRNA cleavage factor complex subunit (predicted)" ;
chromosome2 GeneDB mRNA 3703525 3706280 . - . mRNA SPBC19F5.02c ; db_xref "SPD:37/37E01" ; systematic_id "SPBC19F5.02c" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR324C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC19F5.02c" ; product "U3 snoRNP protein Utp4 (predicted)" ;
chromosome2 GeneDB mRNA 758351 764513 . - . mRNA SPBC577.06c ; systematic_id "SPBC577.06c" ; colour "7" ; gene "SPBC577.06c ||| stt4" ; Alias "stt4" ; db_xref "SPD:31/31B11" ; GO "GO:0005739; mitochondrion
GO:0005886; plasma membrane
GO:0004430; 1-phosphatidylinositol 4-kinase activity
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0048017; inositol lipid-mediated signaling
GO:0046854; phosphoinositide phosphorylation
GO:0006646; phosphatidylethanolamine biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR305C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "stt4" ; product "1-phosphatidylinositol 4-kinase Stt4 (predicted)" ; EC_number "2.7.1.67" ;
chromosome2 GeneDB mRNA 4476012 4476674 . + . mRNA SPBPB2B2.08 ; db_xref "SPD:41/41E01" ; systematic_id "SPBPB2B2.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBPB2B2.08" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 536757 537910 . + . mRNA SPBC649.03 ; systematic_id "SPBC649.03" ; colour "2" ; gene "rhp14 ||| SPBC649.03" ; Alias "rhp14" ; db_xref "SPD:11/11G03" ; GO "GO:0006289; nucleotide-excision repair
GO:0000109; nucleotide-excision repair complex
GO:0000715; nucleotide-excision repair, DNA damage recognition
GO:0003684; damaged DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YMR201C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human XPA ortholog; date=20100217" ; primary_name "rhp14" ; product "XP-A family homolog Rhp14" ;
chromosome2 GeneDB mRNA 712482 714131 . + . mRNA SPBC119.01 ; systematic_id "SPBC119.01" ; colour "2" ; gene "rpn3 ||| SPBC119.01 ||| SPBPJ4664.07" ; Alias "rpn3" ; db_xref "SPD:50/50H07" ; synonym "SPBPJ4664.07" ; GO "GO:0005634; nucleus
GO:0008541; proteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YER021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpn3" ; product "19S proteasome regulatory subunit Rpn3" ;
chromosome2 GeneDB mRNA 1562508 1563564 . - . mRNA SPBC27.02c ; systematic_id "SPBC27.02c" ; colour "2" ; gene "ask1 ||| SPBC27.02c ||| mug181" ; Alias "ask1" ; db_xref "SPD:16/16B11" ; synonym "mug181" ; GO "GO:0042729; DASH complex
GO:0000779; condensed chromosome, pericentric region
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005816; spindle pole body
GO:0045132; meiotic chromosome segregation
GO:0007052; mitotic spindle organization and biogenesis
GO:0034613; cellular protein localization
GO:0031134; sister chromatid biorientation
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16079914; date=19700101 ||| term=orthologous to S. cerevisiae YKL052C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:16079914; date=20090213" ; primary_name "ask1" ; product "DASH complex subunit Ask1" ;
chromosome2 GeneDB mRNA 2529715 2532136 . + . mRNA SPBC365.16 ; db_xref "SPD:10/10H01" ; systematic_id "SPBC365.16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20101124 ||| term=species distribution, conserved in Eukaryotes; date=20101124 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20101124" ; colour "10" ; gene "SPBC365.16" ; product "conserved protein" ;
chromosome2 GeneDB mRNA 3443320 3446347 . - . mRNA SPBC2G2.06c ; systematic_id "SPBC2G2.06c" ; colour "7" ; gene "apl1 ||| SPBC2G2.06c" ; Alias "apl1" ; db_xref "SPD:38/38B04" ; GO "GO:0030122; AP-2 adaptor complex
GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YJR005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "apl1" ; product "AP-2 adaptor complex subunit Apl1 (predicted)" ;
chromosome2 GeneDB mRNA 191936 193610 . - . mRNA SPBC1198.11c ; systematic_id "SPBC1198.11c" ; colour "2" ; gene "reb1 ||| SPBC1198.11c ||| SPBC660.01c" ; Alias "reb1" ; db_xref "SPD:25/25G05" ; synonym "SPBC660.01c" ; GO "GO:0005730; nucleolar
GO:0003716; RNA polymerase I transcription termination factor activity
GO:0043110; rDNA spacer replication fork barrier binding
GO:0071946; cis-acting DNA replication termination
GO:0031582; replication fork blocking at rDNA repeats
GO:0006363; transcription termination from RNA polymerase I promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14673172; date=19700101 ||| term=DNA binding specificity, binds rDIS 5'-AGGTAAGGGTAATGCAC-3'; db_xref=PMID:9016645; cv=DNA_binding_specificity; date=19700101 ||| term=orthologous to S. cerevisiae YBR049C and YDR026c; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=subunit composition, homodimeric; db_xref=PMID:18257517; date=20101006" ; primary_name "reb1" ; product "RNA polymerase I transcription termination factor Reb1" ;
chromosome2 GeneDB mRNA 1412910 1414047 . + . mRNA SPBC17A3.06 ; systematic_id "SPBC17A3.06" ; colour "7" ; gene "SPBC17A3.06" ; obsolete_name "pi040" ; db_xref "SPD:32/32C07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004725; protein tyrosine phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0000027; ribosomal large subunit assembly" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome2 GeneDB mRNA 2965150 2966585 . - . mRNA SPBC2A9.11c ; systematic_id "SPBC2A9.11c" ; colour "7" ; gene "SPBC2A9.11c ||| SPBC2D10.01c" ; db_xref "SPD:22/22G03" ; synonym "SPBC2D10.01c" ; GO "GO:0051168; nuclear export" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR045C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "nuclear export factor (predicted)" ;
chromosome2 GeneDB mRNA 1249888 1254453 . - . mRNA SPBC651.08c ; systematic_id "SPBC651.08c" ; colour "7" ; gene "rpc1 ||| SPBC651.08c" ; Alias "rpc1" ; db_xref "SPD:30/30G05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR116C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0006383; transcription from RNA polymerase III promoter
GO:0005666; DNA-directed RNA polymerase III complex" ; primary_name "rpc1" ; product "DNA-directed RNA polymerase III complex large subunit Rpc1 (predicted)" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB mRNA 4073730 4074995 . + . mRNA SPBC1347.07 ; systematic_id "SPBC1347.07" ; colour "7" ; gene "SPBC1347.07 ||| rex2" ; Alias "rex2" ; db_xref "SPD:10/10C02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008408; 3'-5' exonuclease activity
GO:0006364; rRNA processing
GO:0005739; mitochondrion" ; primary_name "rex2" ; product "RNA exonuclease (predicted)" ; EC_number "3.1.-.-" ;
chromosome2 GeneDB mRNA 570968 574157 . + . mRNA SPBC354.10 ; systematic_id "SPBC354.10" ; colour "7" ; gene "SPBC354.10" ; Alias "def1" ; db_xref "SPD:29/29F11" ; GO "GO:0006974; response to DNA damage stimulus
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000723; telomere maintenance
GO:0006283; transcription-coupled nucleotide- excision repair
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=20061214 ||| term=orthologous to S. cerevisiae YKL054C; date=19700101 ||| term=CUE domain protein; date=20081103 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "def1" ; product "RNAPII degradation factor Def1 (predicted)" ;
chromosome2 GeneDB mRNA 3807090 3807918 . + . mRNA SPBC21C3.06 ; db_xref "SPD:02/02E11" ; systematic_id "SPBC21C3.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC21C3.06" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 371978 373628 . + . mRNA SPBC1271.01c ; systematic_id "SPBC1271.01c" ; colour "2" ; gene "pof13 ||| SPBC1271.01c" ; note "otholog candidate YMR094W ? check?" ; Alias "pof13" ; db_xref "SPD:19/19A02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0016567; protein ubiquitination
GO:0005515; protein binding" ; primary_name "pof13" ; product "F-box protein Pof13" ;
chromosome2 GeneDB mRNA 2054190 2056445 . - . mRNA SPBC29A3.09c ; db_xref "SPD:38/38A04" ; systematic_id "SPBC29A3.09c" ; colour "7" ; GO "GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0006448; regulation of translational elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YFR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC29A3.09c" ; product "AAA family ATPase Gcn20 (predicted)" ;
chromosome2 GeneDB mRNA 1992973 1993650 . - . mRNA SPBC1A4.11c ; obsolete_name "SPBC1A4.09c" ; db_xref "SPD:02/02F10" ; systematic_id "SPBC1A4.11c" ; colour "8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC1A4.11c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 767536 769405 . + . mRNA SPBC577.09 ; systematic_id "SPBC577.09" ; colour "2" ; gene "SPBC577.09" ; Alias "ckn1" ; db_xref "SPD:24/24C11" ; GO "GO:0005634; nucleus
GO:0070912; Ddb1-Ckn1 complex
GO:0006283; transcription-coupled nucleotide- excision repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=disease associated, Cockayne syndrome; date=20060721 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR030C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, CocKayNe syndrome 1; db_xref=PMID:18794354; cv=name_description; date=20090909 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18794354; date=20090909 ||| term=DDB-box; db_xref=PMID:18794354; date=20090909 ||| term=phenotype, sensitive to UV; allele=uvde delta; cv=phenotype; db_xref=PMID:18794354; date=20090909" ; primary_name "ckn1" ; product "ERCC-8 DNA repair homolog" ;
chromosome2 GeneDB mRNA 1520054 1520699 . - . mRNA SPBC83.06c ; db_xref "SPD:01/01A08" ; systematic_id "SPBC83.06c" ; colour "7" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL183W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC83.06c" ; product "mitochondrial ribosomal protein subunit L36, Rtc6 (predicted)" ;
chromosome2 GeneDB mRNA 3338604 3340583 . + . mRNA SPBC17D1.06 ; systematic_id "SPBC17D1.06" ; colour "7" ; gene "dbp3 ||| SPBC17D1.06" ; note "N-terminal may need truncating ||| used to have code SPCC17D1.06 (typo)" ; Alias "dbp3" ; obsolete_name "SPCC17D1.06" ; db_xref "SPD:35/35H02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YGL078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; 35S primary transcript processing
GO:0000027; ribosomal large subunit assembly and maintenance
GO:0005730; nucleolus
GO:0005524; ATP binding" ; primary_name "dbp3" ; product "ATP-dependent RNA helicase Dbp3 (predicted)" ;
chromosome2 GeneDB mRNA 3020757 3022088 . + . mRNA SPBC15D4.05 ; db_xref "SPD:19/19G03" ; systematic_id "SPBC15D4.05" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CBWD1 and CBWD2 and CBWD3 ortholog; date=20100728" ; gene "SPBC15D4.05" ; product "conserved CobW/HypB/UreG nucleotide binding domain protein (predicted)" ;
chromosome2 GeneDB mRNA 4083937 4085227 . + . mRNA SPBC1347.12 ; systematic_id "SPBC1347.12" ; colour "7" ; gene "SPBC1347.12 ||| arp1" ; Alias "arp1" ; db_xref "SPD:22/22D07" ; GO "GO:0005869; dynactin complex
GO:0000132; establishment of mitotic spindle orientation
GO:0007097; nuclear migration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR129C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ACTR1A ortholog; date=20100702" ; primary_name "arp1" ; product "centractin family actin-like protein Arp1 (predicted)" ;
chromosome2 GeneDB mRNA 3383318 3385461 . - . mRNA SPBC3B8.06 ; db_xref "SPD:44/44H05" ; systematic_id "SPBC3B8.06" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR061W and YNL237W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC3B8.06" ; product "conserved fungal protein" ; note "overlaps two S.cerevisiae hypotheticals - putative mis-prediction in S. cer ChrIII region), similar (at N- term) eg. to YCR061W, similar (at C-term) eg. to YCR062W" ;
chromosome2 GeneDB mRNA 3364726 3365630 . - . mRNA SPBC11C11.09c ; systematic_id "SPBC11C11.09c" ; colour "2" ; gene "rpl502 ||| rpl5-2 ||| SPBC11C11.09c ||| rpl5b" ; Alias "rpl502" ; db_xref "SPD:40/40B06" ; synonym "rpl5-2 ||| rpl5b" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL131W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; primary_name "rpl502" ; product "60S ribosomal protein L5" ;
chromosome2 GeneDB mRNA 472210 473450 . + . mRNA SPBC428.15 ; db_xref "SPD:19/19F01" ; systematic_id "SPBC428.15" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0016887; ATPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=orthologous to S. cerevisiae YGR210C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human OLA1 ortholog; date=20100621" ; gene "SPBC428.15" ; product "Obg-like ATPase (predicted)" ;
chromosome2 GeneDB mRNA 64669 65514 . - . mRNA SPBPB21E7.04c ; obsolete_name "SPAPB21E7.04c" ; db_xref "SPD:52/52A05" ; systematic_id "SPBPB21E7.04c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human COMT ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBPB21E7.04c" ; product "human COMT ortholog 2" ;
chromosome2 GeneDB mRNA 769682 770726 . + . mRNA SPBC577.10 ; db_xref "SPD:09/09H09" ; systematic_id "SPBC577.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; gene "SPBC577.10" ; product "20S proteasome component beta 7 (predicted)" ; EC_number "3.4.25.1" ;
chromosome2 GeneDB mRNA 2220730 2222266 . + . mRNA SPBC14C8.10 ; systematic_id "SPBC14C8.10" ; colour "7" ; gene "SPBC14C8.10 ||| mrpl24" ; Alias "mrpl24" ; db_xref "SPD:05/05D04" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR193W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl24" ; product "mitochondrial ribosomal protein subunit L28 (predicted)" ;
chromosome2 GeneDB mRNA 3543588 3545958 . - . mRNA SPBC887.03c ; systematic_id "SPBC887.03c" ; colour "7" ; gene "noc3 ||| SPBC887.03c" ; Alias "noc3" ; db_xref "SPD:28/28C04" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0030691; Noc2p-Noc3p complex
GO:0006364; rRNA processing
GO:0006270; DNA replication initiation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "noc3" ; product "Noc2p-Noc3p complex subunit Noc3 (predicted)" ;
chromosome2 GeneDB mRNA 2394409 2395575 . - . mRNA SPBC36B7.08c ; db_xref "SPD:32/32C02" ; systematic_id "SPBC36B7.08c" ; colour "7" ; GO "GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0042393; histone binding
GO:0006334; nucleosome assembly
GO:0010698; acetyltransferase activator activity
GO:0035066; positive regulation of histone acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL246W; date=19700101 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SET ortholog; date=20100208 ||| term=disease associated, cancer; date=20100217" ; gene "SPBC36B7.08c" ; product "nucleosome assembly protein (predicted)" ;
chromosome2 GeneDB mRNA 253148 253984 . + . mRNA SPBC800.02 ; systematic_id "SPBC800.02" ; colour "7" ; gene "whi5 ||| SPBC800.02 ||| mug54" ; Alias "whi5" ; db_xref "SPD:10/10H07" ; synonym "mug54" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016566; specific transcriptional repressor activity
GO:0032569; gene-specific transcription from RNA polymerase II promoter
GO:0008361; regulation of cell size
GO:0007346; regulation of mitotic cell cycle
GO:0000083; regulation of transcription involved in G1/S phase of mitotic cell cycle
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR083W; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, WHIskey; cv=name_description; date=20090727 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=warning, gene structure updated; cv=warning; date=20090727 ||| term=modification, phosphorylated; qualifier=predicted; evidence=ISS; cv=pt_mod; date=20090918 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "whi5" ; product "cell cycle transcriptional repressor Whi5 (predicted)" ; reserved_name "whi5" ;
chromosome2 GeneDB mRNA 4279875 4281740 . - . mRNA SPBC16A3.10 ; db_xref "SPD:24/24H02" ; systematic_id "SPBC16A3.10" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane
GO:0046474; glycerophospholipid biosynthetic process
GO:0003841; 1-acylglycerol-3-phosphate O- acyltransferase activity
GO:0006646; phosphatidyl ethanomine biosynthetic process
GO:0047184; 1-acylglycerophosphocholin O- acyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR175C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPBC16A3.10" ; product "membrane bound O-acyltransferase, MBOAT (predicted)" ;
chromosome2 GeneDB mRNA 3539188 3539902 . - . mRNA SPBC1105.18c ; systematic_id "SPBC1105.18c" ; colour "7" ; gene "SPBC1105.18c ||| SPBC887.21c" ; db_xref "SPD:50/50B06" ; synonym "SPBC887.21c" ; GO "GO:0004045; aminoacyl-tRNA hydrolase activity
GO:0005739; mitochondrion
GO:0006415; mitochondrial translation termination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR281C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "peptide release factor (predicted)" ;
chromosome2 GeneDB mRNA 3362855 3364344 . + . mRNA SPBC11C11.08 ; systematic_id "SPBC11C11.08" ; colour "2" ; gene "srp1 ||| SPBC11C11.08" ; Alias "srp1" ; db_xref "SPD:32/32B03" ; GO "GO:0005634; nucleus
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12186627; date=19700101 ||| term=SR family; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:12186627; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Dsk1; qualifier=phosphorylated_by; db_xref=PMID:12186627; date=20100825" ; primary_name "srp1" ; product "SR family protein Srp1" ;
chromosome2 GeneDB mRNA 3688539 3691006 . + . mRNA SPBP8B7.27 ; systematic_id "SPBP8B7.27" ; colour "7" ; gene "SPBP8B7.27 ||| mug30" ; note "first exon may be incorrect" ; Alias "mug30" ; db_xref "SPD:28/28H03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20060518 ||| term=zf-C3HC4 type (RING finger); date=20060518 ||| term=zf-UBP type; date=20060518 ||| term=ubiquitin-protein ligase E3; date=20060504 ||| term=orthologous to S. cerevisiae YJR036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0019787; small conjugating protein ligase activity" ; primary_name "mug30" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB mRNA 787678 789303 . + . mRNA SPBC530.02 ; db_xref "SPD:45/45D09" ; systematic_id "SPBC530.02" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC11D3.05 and SPCC794.04C; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC530.02" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 483949 486980 . - . mRNA SPBC902.02c ; systematic_id "SPBC902.02c" ; colour "2" ; gene "ctf18 ||| chl12 ||| SPBC902.02c" ; note "Ctf18 RFC-like complex is required in the absence of Rfc1 (PMID 16040599)" ; Alias "ctf18" ; db_xref "SPD:47/47G03" ; synonym "chl12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; qualifier=predicted; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YMR078C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031390; Ctf18 RFC-like complex
GO:0003689; DNA clamp loader activity
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0045132; meiotic chromosome segregation
GO:0007062; sister chromatid cohesion
GO:0031390; nuclear replication fork" ; primary_name "ctf18" ; product "RFC-like complex subunit Ctf18" ;
chromosome2 GeneDB mRNA 2001057 2003475 . + . mRNA SPBP23A10.04 ; systematic_id "SPBP23A10.04" ; colour "2" ; gene "apc2 ||| SPBP23A10.04" ; note "04.02.2003 coordinates updated additional in-frame splice @ 5325,5371 (pers. comm. Hyun-Joo Yoon Vanderbilt.edu)" ; Alias "apc2" ; db_xref "SPD:37/37E02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR127C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008054; cyclin catabolism
GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0005515; protein binding" ; primary_name "apc2" ; product "anaphase-promoting complex cullin family subunit Apc2" ;
chromosome2 GeneDB mRNA 871210 873305 . + . mRNA SPBC713.03 ; db_xref "SPD:49/49A09" ; systematic_id "SPBC713.03" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0004458; D-lactate dehydrogenase (cytochrome) activity
GO:0006091; generation of precursor metabolites and energy
GO:0006089; lactate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL178W and YEL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC713.03" ; product "mitochondrial D-lactate dehydrogenase, cytochrome (predicted)" ;
chromosome2 GeneDB mRNA 1244771 1245560 . + . mRNA SPBC651.04 ; db_xref "SPD:08/08E02" ; systematic_id "SPBC651.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC651.04" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 798995 802902 . - . mRNA SPBC530.06c ; db_xref "SPD:39/39C04" ; systematic_id "SPBC530.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, frameshifted; cv=warning; date=20100222" ; colour "7" ; GO "GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation" ; gene "SPBC530.06c" ; product "translation initiation factor eIF3 alpha subunit (p135) (predicted)" ;
chromosome2 GeneDB mRNA 3331682 3332940 . - . mRNA SPBC17D1.03c ; db_xref "SPD:15/15B07" ; systematic_id "SPBC17D1.03c" ; colour "7" ; GO "GO:0000175; 3'-5'-exoribonuclease activity
GO:0006364; 35S primary transcript processing
GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC17D1.03c" ; product "exosome subunit Rrp43 (predicted)" ;
chromosome2 GeneDB mRNA 866316 870221 . - . mRNA SPBC713.02c ; systematic_id "SPBC713.02c" ; colour "2" ; gene "ubp21 ||| ubpD ||| ubp15 ||| SPBC713.02c" ; Alias "ubp15" ; db_xref "SPD:49/49G03" ; synonym "ubpD ||| ubp21" ; GO "GO:0005634; nucleus
GO:0045859; regulation of protein kinase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0030133; transport vesicle
GO:0032153; cell division site
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR304W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human USP7 ortholog; date=20101001" ; primary_name "ubp15" ; product "ubiquitin C-terminal hydrolase Ubp15" ; EC_number "3.1.2.15" ;
chromosome2 GeneDB mRNA 2050258 2050695 . - . mRNA SPBC29A3.07c ; systematic_id "SPBC29A3.07c" ; colour "7" ; gene "SPBC29A3.07c" ; Alias "sab14" ; db_xref "SPD:42/42E05" ; GO "GO:0005686; snRNP U2
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000384; first spliceosomal transesterification activity
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human Sf3b14 homolog; date=20090922" ; primary_name "sab14" ; product "U2 snRNP-associated protein Sf3b14 homolog (predicted)" ; reserved_name "sab14" ;
chromosome2 GeneDB mRNA 3995638 3996384 . + . mRNA SPBC3B9.04 ; db_xref "SPD:09/09B03" ; systematic_id "SPBC3B9.04" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR316W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC3B9.04" ; product "mitochondrial methyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 784586 787145 . + . mRNA SPBC530.01 ; systematic_id "SPBC530.01" ; colour "7" ; gene "SPBC530.01 ||| gyp1" ; Alias "gyp1" ; db_xref "SPD:25/25A10" ; GO "GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR070C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gyp1" ; product "GTPase activating protein Gyp1 (predicted)" ; reserved_name "gyp1" ;
chromosome2 GeneDB mRNA 2868453 2871051 . - . mRNA SPBP19A11.07c ; db_xref "SPD:28/28F11" ; obsolete_name "SPBC1346.03" ; systematic_id "SPBP19A11.07c" ; synonym "SPBP4H10.02c" ; colour "10" ; controlled_curation "term=human c17orf28 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20091019 ||| term=orthologous to S. cerevisiae YLR436C; date=19700101" ; product "human c17orf28 ortholog 2" ;
chromosome2 GeneDB mRNA 1138748 1139613 . - . mRNA SPBC409.04c ; systematic_id "SPBC409.04c" ; colour "2" ; gene "mis12 ||| SPBC409.04c" ; db_xref "SPD:09/09G06" ; Alias "mis12" ; GO "GO:0000818; MIND complex
GO:0031617; NMS complex
GO:0000779; condensed chromosome, pericentric region
GO:0000778; condensed nuclear chromosome kinetochore
GO:0000939; inner kinetochore of condensed chromosome
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation
GO:0000022; mitotic spindle elongation
GO:0019236; response to pheromone" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10398680; date=20100120 ||| term=phenotype, cut; db_xref=PMID:10398680; date=20100730 ||| term=orthologous to S. cerevisiae YAL034W-A; date=19700101 ||| term=human hMis12 ortholog; date=20080602 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis12" ; product "kinetochore protein Mis12" ;
chromosome2 GeneDB mRNA 1399818 1401802 . - . mRNA SPBC17A3.01c ; systematic_id "SPBC17A3.01c" ; colour "7" ; gene "SPBC8D2.21c ||| SPBC17A3.01c ||| tim50" ; Alias "tim50" ; obsolete_name "pi044" ; db_xref "SPD:32/32H07" ; synonym "SPBC8D2.21c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030150; protein import into mitochondrial matrix
GO:0005744; mitochondrial inner membrane presequence translocase complex
GO:0016021; integral to membrane
GO:0015450; protein translocase activity" ; primary_name "tim50" ; product "TIM23 translocase complex subunit Tim50 (predicted)" ;
chromosome2 GeneDB mRNA 1796953 1800362 . + . mRNA SPBC18H10.16 ; systematic_id "SPBC18H10.16" ; colour "2" ; gene "can1 ||| SPBC18H10.16" ; note "identification of SPBC18H10.16 as can1, pers. comm. Charlie Hoffman" ; Alias "can1" ; db_xref "SPD:48/48A04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR235W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, ubiquitinated; evidence=IDA; db_xref=PMID:20838651; date=20101001" ; GO "GO:0022857; transmembrane transporter activity
GO:0005886; plasma membrane
GO:0015809; arginine transport
GO:0015181; arginine transmembrane transporter activity" ; primary_name "can1" ; product "arginine transporter Can1" ;
chromosome2 GeneDB mRNA 3304727 3306572 . + . mRNA SPBC17D11.01 ; systematic_id "SPBC17D11.01" ; colour "2" ; gene "nep1 ||| SPBC17D11.01" ; Alias "nep1" ; obsolete_name "SPBC20F10.11" ; db_xref "SPD:21/21G11" ; GO "GO:0005737; cytoplasm
GO:0008180; signalosome complex
GO:0019784; NEDD8-specific protease activity
GO:0005515; protein binding
GO:0000338; protein deneddylation
GO:0000338; protein deneddylation
GO:0016926; protein desumoylation
GO:0016925; protein sumoylation
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, target does not appear to be only cullins; db_xref=PMID:15769255; date=20050321 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15769255; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, sensitive to N- ethylmaleimide; db_xref=PMID:15769255; date=20100309 ||| term=target is Pcu1; db_xref=PMID:15769255; date=20100309 ||| term=target is Pcu3; db_xref=PMID:15769255; date=20100309 ||| term=target is Pcu4; db_xref=PMID:15769255; date=20100309" ; primary_name "nep1" ; product "NEDD8 protease Nep1" ;
chromosome2 GeneDB mRNA 824354 825870 . + . mRNA SPBC530.13 ; systematic_id "SPBC530.13" ; colour "2" ; gene "SPBC530.13" ; Alias "lsc1" ; db_xref "SPD:21/21C08" ; GO "GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0031124; mRNA 3'-end processing
GO:0045903; positive regulation of translational fidelity
GO:0006468; protein amino acid phosphorylation
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0032806; carboxy-terminal domain protein kinase complex
GO:0032806; carboxy-terminal domain protein kinase complex
GO:0005515; protein binding
GO:0005634; nucleus
GO:0070816; phosphorlyation of RNA polymerase II C- terminal domain
GO:0031565; cytokinesis checkpoint
GO:0031031; positive regulation of septation initiation signaling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YJL006C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Rpb1; db_xref=PMID:17502918; date=20100222" ; primary_name "lsc1" ; product "Lsk1 associated cyclin" ;
chromosome2 GeneDB mRNA 932669 934239 . - . mRNA SPBC646.06c ; systematic_id "SPBC646.06c" ; colour "2" ; gene "agn2 ||| SPBC646.06c" ; Alias "agn2" ; db_xref "SPD:19/19E02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, gene structure updated; db_xref=PMID:15194814; date=20100927" ; GO "GO:0009986; cell surface
GO:0005619; spore wall (sensu Fungi)
GO:0051118; glucan endo-1,3-alpha-glucosidase activity
GO:0072316; alpha-glucan catabolic process involved in ascospore release from ascus
GO:0071998; ascospore release from ascus" ; primary_name "agn2" ; product "glucan endo-1,3-alpha-glucosidase Agn2" ; EC_number "3.2.1.59" ;
chromosome2 GeneDB mRNA 1157104 1158424 . + . mRNA SPBC409.10 ; systematic_id "SPBC409.10" ; colour "2" ; gene "ade7 ||| SPBC409.10" ; Alias "ade7" ; db_xref "SPD:12/12D01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAR015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0006189; 'de novo' IMP biosynthesis
GO:0004639; phosphoribosylaminoimidazolesuccinocarbo xamidesynthase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0046084; adenine biosynthesis" ; primary_name "ade7" ; product "phosphoribosylamidoimidazolesuccinocarboxamide synthase, SAICAR synthetase, Ade7" ; EC_number "6.3.2.6" ;
chromosome2 GeneDB mRNA 137044 138063 . + . mRNA SPBC1683.02 ; db_xref "SPD:15/15C03" ; systematic_id "SPBC1683.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; db_xref=PMID:14643670; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1683.02" ; product "adenine/adenosine deaminase family (predicted)" ; EC_number "3.5.4.2" ;
chromosome2 GeneDB mRNA 623323 624041 . - . mRNA SPBC839.13c ; systematic_id "SPBC839.13c" ; colour "2" ; gene "rpl1601 ||| SPBC839.13c" ; Alias "rpl1601" ; obsolete_name "rpl16-1 ||| rpl13a-1 ||| SPBC24E9.13c" ; db_xref "SPD:31/31G01" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL133C and YNL069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1601" ; product "60S ribosomal protein L13/L16 (predicted)" ;
chromosome2 GeneDB mRNA 1126358 1127896 . + . mRNA SPBC1709.14 ; db_xref "SPD:19/19C09" ; systematic_id "SPBC1709.14" ; colour "7" ; GO "GO:0000224; peptide-N4-(N-acetyl-beta- glucosaminyl)asparagineamidase activity
GO:0006517; protein deglycosylation
GO:0006515; misfolded or incompletely synthesized protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1709.14" ; product "peptide N-glycanase (predicted)" ;
chromosome2 GeneDB mRNA 4167508 4171855 . + . mRNA SPBC14F5.07 ; systematic_id "SPBC14F5.07" ; colour "7" ; db_xref "SPD:39/39D05" ; Alias "doa10" ; synonym "ssm4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YIL030C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=warning, gene name conflict; cv=warning; date=20100309 ||| term=human MARCH6 ortholog; date=20100309" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0030433; ER-associated protein catabolism
GO:0016567; protein ubiquitination" ; primary_name "doa10" ; product "ER-localized ubiquitin ligase Doa10 (predicted)" ;
chromosome2 GeneDB mRNA 5386 6410 . + . mRNA SPBC1348.01 ; obsolete_name "SPAC1348.01" ; db_xref "SPD:51/51C04" ; systematic_id "SPBC1348.01" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101" ; gene "SPBC1348.01" ; product "S. pombe specific DUF999 protein family 5" ;
chromosome2 GeneDB mRNA 667125 668819 . + . mRNA SPBC947.05c ; db_xref "SPD:35/35C12" ; systematic_id "SPBC947.05c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR214W and YKL220C and YOR381W and YNR060W and YGL160W and YLR047C and YOR384W and YLL051C and YOL152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0015677; copper ion import
GO:0034755; iron ion transmembrane transport
GO:0015892; siderophore-iron transport
GO:0006879; iron ion homeostasis
GO:0000293; ferric-chelate reductase activity
GO:0005886; plasma membrane
GO:0005506; iron ion binding
GO:0050660; FAD binding
GO:0016021; integral to membrane" ; gene "SPBC947.05c" ; product "ferric-chelate reductase (predicted)" ; EC_number "1.16.1.7" ;
chromosome2 GeneDB mRNA 1001011 1001802 . + . mRNA SPBC146.02 ; db_xref "SPD:10/10A07" ; systematic_id "SPBC146.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC146.02" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3042978 3046004 . - . mRNA SPBC13E7.03c ; db_xref "SPD:37/37E09" ; systematic_id "SPBC13E7.03c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR359W; date=19700101 ||| term=Smaug family; date=20080714 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005829; cytosol
GO:0003723; RNA binding
GO:0000289; nuclear-transcribed mRNA poly(A) tail shortening" ; gene "SPBC13E7.03c" ; product "RNA hairpin binding protein (predicted)" ;
chromosome2 GeneDB mRNA 1864471 1865385 . + . mRNA SPBC3H7.18 ; Alias "tam8" ; systematic_id "SPBC3H7.18" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "tam8" ; gene "SPBC3H7.18" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4038038 4038862 . - . mRNA SPBC215.06c ; db_xref "SPD:05/05D09" ; systematic_id "SPBC215.06c" ; colour "10" ; GO "GO:0005730; nucleolus
GO:0003677; DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YCR087C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human LYAR ortholog; date=20100727" ; gene "SPBC215.06c" ; product "human LYHRT homolog" ;
chromosome2 GeneDB mRNA 676629 677127 . + . mRNA SPBC947.03c ; systematic_id "SPBC947.03c" ; colour "7" ; gene "SPBC947.03c" ; Alias "naa38" ; db_xref "SPD:01/01D11" ; synonym "mak31" ; GO "GO:0031417; NatC complex
GO:0005737; cytoplasm
GO:0017196; N-terminal peptidyl-methionine acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR020C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; primary_name "naa38" ; product "NatC N-acetyltransferase non catalytic Sm-like domain subunit Naa38 (predicted)" ;
chromosome2 GeneDB mRNA 707531 712372 . + . mRNA SPBPJ4664.06 ; systematic_id "SPBPJ4664.06" ; colour "2" ; gene "gpt1 ||| SPBPJ4664.06" ; Alias "gpt1" ; db_xref "SPD:49/49H04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8631292; date=19700101 ||| term=phenotype, cell morphology, small cells; qualifier=deletion; db_xref=PMID:8631292; date=20101126 ||| term=gene expression, expression induced by stress; db_xref=PMID:8631292; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YOR336W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=disease associated, glycosylation disorders; date=20070627 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005783; endoplasmic reticulum
GO:0003980; UDP-glucose:glycoprotein glucosyltransferase activity
GO:0006078; 1,6-beta-glucan biosynthesis
GO:0033554; cellular response to stress
GO:0006486; protein glycosylation" ; primary_name "gpt1" ; product "UDP-glucose-glycoprotein glucosyltransferase Gpt1" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB mRNA 2128032 2128440 . - . mRNA SPBC23G7.15c ; systematic_id "SPBC23G7.15c" ; colour "2" ; gene "rpp202 ||| rpp2-2 ||| SPBC23G7.15c" ; Alias "rpp202" ; db_xref "SPD:39/39G08" ; synonym "rpp2-2" ; GO "GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006414; translational elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL039W and YDR382W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpp202" ; product "60S acidic ribosomal protein P2B subunit" ;
chromosome2 GeneDB mRNA 3411334 3412905 . - . mRNA SPBC4B4.01c ; db_xref "SPD:20/20F11" ; systematic_id "SPBC4B4.01c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR531W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0015937; coenzyme A biosynthesis
GO:0004594; pantothenate kinase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPBC4B4.01c" ; product "fumble family pantothenate kinase (predicted)" ; EC_number "2.7.1.33" ;
chromosome2 GeneDB mRNA 3047927 3050477 . + . mRNA SPBC13E7.05 ; systematic_id "SPBC13E7.05" ; colour "7" ; gene "gpi14 ||| SPBC13E7.05" ; Alias "gpi14" ; db_xref "SPD:46/46H09" ; GO "GO:0035268; protein amino acid mannosylation
GO:0005789; endoplasmic reticulum membrane
GO:0006506; GPI anchor biosynthesis
GO:0000030; mannosyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure may be incorrect; date=20100731" ; primary_name "gpi14" ; product "pig-M (predicted)" ;
chromosome2 GeneDB mRNA 2995324 2996066 . - . mRNA SPBC2D10.15c ; systematic_id "SPBC2D10.15c" ; colour "7" ; gene "SPBC2D10.15c" ; Alias "pth1" ; db_xref "SPD:09/09A04" ; GO "GO:0004045; aminoacyl-tRNA hydrolase activity
GO:0006412; protein biosynthesis
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pth1" ; product "mitochondrial peptidyl-tRNA hydrolase Pth1 (predicted)" ; EC_number "3.1.1.29" ;
chromosome2 GeneDB mRNA 2219430 2220322 . - . mRNA SPBC14C8.09c ; systematic_id "SPBC14C8.09c" ; colour "7" ; gene "SPBC14C8.09c" ; db_xref "SPD:03/03F09" ; obsolete_name "SPBC14C8.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL177C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20090202 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090202 ||| term=warning, frameshifted; db_xref=PMID:16823372; cv=warning; date=20090202" ; GO "GO:0043555; regulation of translation in response to stress
GO:0045182; translation regulator activity
GO:0001932; regulation of protein amino acid phosphorylation" ; product "IMPACT domain protein, involved in translation (predicted)" ;
chromosome2 GeneDB mRNA 633831 635538 . - . mRNA SPBC115.03 ; db_xref "SPD:17/17D09" ; systematic_id "SPBC115.03" ; synonym "SPBC839.18c" ; GO "GO:0006740; NADPH regeneration
GO:0016491; oxidoreductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR315W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20100621 ||| term=human GFOD1 ortholog; date=20100728" ; colour "10" ; product "gfo/idh/mocA family oxidoreductase (predicted)" ;
chromosome2 GeneDB mRNA 1527751 1528681 . + . mRNA SPBC83.10 ; db_xref "SPD:06/06A07" ; systematic_id "SPBC83.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC83.10" ; product "human c15orf24 ortholog" ;
chromosome2 GeneDB mRNA 1098255 1101500 . - . mRNA SPBC1709.02c ; systematic_id "SPBC1709.02c" ; colour "2" ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:30/30B09" ; Alias "vrs1" ; synonym "vas1 ||| SPBC1734.18c ||| ValRS1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR094W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0005524; ATP binding
GO:0004832; valine-tRNA ligase activity
GO:0006438; valyl-tRNA aminoacylation" ; primary_name "vrs1" ; product "cytoplasmic valine-tRNA ligase Vrs1/Vas1" ; EC_number "6.1.1.9" ;
chromosome2 GeneDB mRNA 1745777 1747786 . - . mRNA SPBC1D7.03 ; systematic_id "SPBC1D7.03" ; colour "7" ; gene "mug80 ||| SPBC1D7.03" ; Alias "mug80" ; db_xref "SPD:21/21D11" ; GO "GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=orthologous to S. cerevisiae YGL215W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug80" ; product "cyclin Clg1 (predicted)" ;
chromosome2 GeneDB mRNA 3650455 3651820 . - . mRNA SPBP8B7.10c ; db_xref "SPD:19/19A11" ; systematic_id "SPBP8B7.10c" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030490; processing of 20S pre-rRNA
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR078W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; gene "SPBP8B7.10c" ; product "U3 snoRNP-associated protein Utp16 (predicted)" ;
chromosome2 GeneDB mRNA 2714247 2716668 . - . mRNA SPBC4F6.13c ; db_xref "SPD:38/38A05" ; systematic_id "SPBC4F6.13c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC4F6.13c" ; product "WD repeat/BOP1NT protein (predicted)" ;
chromosome2 GeneDB mRNA 1450371 1451104 . - . mRNA SPBC32H8.01c ; systematic_id "SPBC32H8.01c" ; colour "10" ; gene "SPBP22H7.10c ||| SPBC32H8.01c" ; Alias "SPBP22H7.10c" ; db_xref "SPD:51/51B11" ; synonym "SPBP22H7.10c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; qualifier=inferred from context; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YER128W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPBP22H7.10c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 620577 621840 . - . mRNA SPBC839.11c ; systematic_id "SPBC839.11c" ; colour "2" ; gene "hut1 ||| SPBC839.11c" ; Alias "hut1" ; db_xref "SPD:13/13G09" ; GO "GO:0005459; UDP-galactose transporter activity
GO:0072334; UDP-galactose transmembrane transport
GO:0060904; regulation of protein folding in the endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL244C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hut1" ; product "uridine diphosphate-N-acetylglucosamine transporter Hut1" ;
chromosome2 GeneDB mRNA 1235587 1236465 . - . mRNA SPBC725.17c ; systematic_id "SPBC725.17c" ; colour "7" ; gene "rrn11 ||| SPBC725.17c" ; Alias "rrn11" ; db_xref "SPD:08/08E05" ; GO "GO:0000120; RNA polymerase I transcription factor complex
GO:0006360; transcription from RNA polymerase I promoter
GO:0003701; RNA polymerase I transcription factor activity
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML043C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rrn11" ; product "RNA polymerase I transcription factor subunit Rrn11 (predicted)" ;
chromosome2 GeneDB mRNA 2349593 2350766 . + . mRNA SPBC19G7.04 ; db_xref "SPD:18/18F03" ; systematic_id "SPBC19G7.04" ; colour "10" ; GO "GO:0003677; DNA binding
GO:0032569; gene-specific transcription from RNA polymerase II promoter
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC19G7.04" ; product "HMG box protein" ;
chromosome2 GeneDB mRNA 3200116 3203860 . + . mRNA SPBC776.13 ; systematic_id "SPBC776.13" ; colour "2" ; gene "cnd1 ||| SPBC776.13" ; Alias "cnd1" ; db_xref "SPD:49/49G08" ; GO "GO:0000796; condensin complex
GO:0005737; cytoplasm
GO:0000939; inner kinetochore of condensed chromosome
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0007076; mitotic chromosome condensation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10485849; date=19700101 ||| term=phenotype, cut; qualifier=deletion; db_xref=PMID:10485849; date=20100917 ||| term=orthologous to S. cerevisiae YLR272C; date=19700101 ||| term=human NCAPD2 ortholog; date=20080602 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cnd1" ; product "condensin complex non-SMC subunit Cnd1" ;
chromosome2 GeneDB mRNA 87727 89029 . + . mRNA SPBPB10D8.03 ; systematic_id "SPBPB10D8.03" ; pseudo "_no_value" ; colour "13" ; gene "SPBPB10D8.03" ; product "pseudogene transporter" ;
chromosome2 GeneDB mRNA 3759893 3760616 . + . mRNA SPBC31F10.05 ; systematic_id "SPBC31F10.05" ; colour "8" ; gene "SPBC31F10.05 ||| mug37" ; db_xref "SPD:08/08F03" ; Alias "mug37" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug37" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2948595 2950030 . + . mRNA SPBC2A9.02 ; db_xref "SPD:12/12A11" ; systematic_id "SPBC2A9.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL056C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824" ; colour "10" ; gene "SPBC2A9.02" ; product "NAD dependent epimerase/dehydratase family protein" ;
chromosome2 GeneDB mRNA 2406832 2408230 . + . mRNA SPBC1921.02 ; systematic_id "SPBC1921.02" ; colour "2" ; gene "rad60 ||| SPBC1921.02" ; note "orthology with Rad60, pers. comm. Charly Chahwan" ; Alias "rad60" ; db_xref "SPD:20/20D02" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031297; collapsed replication fork processing
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0006302; double-strand break repair
GO:0006302; double-strand break repair
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cut; qualifier=low_penetrance|deletion; db_xref=PMID:11971984; date=20100802 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:11971984; date=20100802 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=localization, undergoes nucleocytoplasmic shuttling; cv=localization; date=20080104 ||| term=orthologous to S. cerevisiae YDR363W; db_xref=PMID:12897162; date=20080729 ||| term=ubiquitin family protein; date=20080829 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, sumoylated; cv=pt_mod; date=20071123" ; primary_name "rad60" ; product "DNA repair protein Rad60" ;
chromosome2 GeneDB mRNA 2962841 2963783 . + . mRNA SPBC2A9.09 ; db_xref "SPD:10/10C09" ; systematic_id "SPBC2A9.09" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006457; protein folding
GO:0045944; positive regulation of transcription form RNA polymerse II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=orthologous to S. cerevisiae YOR281C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=thioredoxin family; date=20081111" ; gene "SPBC2A9.09" ; product "phosducin family protein (predicted)" ;
chromosome2 GeneDB mRNA 4447515 4449053 . + . mRNA SPBP4G3.02 ; systematic_id "SPBP4G3.02" ; colour "2" ; gene "pho1 ||| SPBP4G3.02" ; Alias "pho1" ; db_xref "SPD:40/40E01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YAR071W and YHR215W and YDL024C and YBR093C and YBR092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; db_xref=PMID:2381421; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; GO "GO:0005576; extracellular region
GO:0009277; cell wall (sensu Fungi)
GO:0030287; periplasmic space (sensu Fungi)
GO:0003993; acid phosphatase activity
GO:0009897; external side of plasma membrane" ; primary_name "pho1" ; product "acid phosphatase Pho1" ; EC_number "3.1.3.2" ;
chromosome2 GeneDB mRNA 4399320 4400375 . + . mRNA SPBC1289.09 ; systematic_id "SPBC1289.09" ; colour "7" ; gene "tim21 ||| SPBC1289.09" ; db_xref "SPD:07/07G04" ; Alias "tim21" ; GO "GO:0030150; protein import into mitochondrial matrix
GO:0005744; mitochondrial inner membrane presequence translocase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Translocase of the Inner Membrane; cv=name_description; date=20100107" ; primary_name "tim21" ; product "TIM23 translocase complex subunit Tim21 (predicted)" ;
chromosome2 GeneDB mRNA 950799 952292 . + . mRNA SPBC646.13 ; systematic_id "SPBC646.13" ; colour "2" ; gene "sds23 ||| psp1 ||| moc1 ||| SPBC646.13" ; Alias "sds23" ; db_xref "SPD:32/32F09" ; synonym "psp1 ||| moc1" ; GO "GO:0051286; cell tip
GO:0005829; cytosol
GO:0005634; nucleus
GO:0005515; protein binding
GO:0019933; cAMP-mediated signaling
GO:0031139; positive regulation of conjugation with cellular fusion
GO:0031137; regulation of conjugation with cellular fusion
GO:0007346; regulation of progression through mitotic cell cycle
GO:0071472; cellular response to salt stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16819157; date=20060517 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:16819157; date=20100705 ||| term=phenotype, sensitive to salt stress; db_xref=PMID:16819157; date=20100705 ||| term=localization negatively regulated by the cAMP pathway; db_xref=PMID:16819157; date=20060811 ||| term=complementation, functionally complemented by S. cerevisiae YGL056C and YBR214W; db_xref=PMID:16041152; cv=complementation; date=20060919 ||| term=orthologous to S. cerevisiae YGL056C and YBR214W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; qualifier=during_stationary_phase; cv=pt_mod; db_xref=PMID:16819157; date=20090213 ||| term=name description, Multicopy suppressor of Overexpressed Cyr1; cv=name_description; date=20091124 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:9242669; date=20100825" ; primary_name "sds23" ; product "inducer of sexual development Sds23/Moc1" ;
chromosome2 GeneDB mRNA 2781316 2781655 . + . mRNA SPBC685.08 ; db_xref "SPD:02/02A06" ; systematic_id "SPBC685.08" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; colour "8" ; gene "SPBC685.08" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2769249 2772488 . + . mRNA SPBC336.15 ; systematic_id "SPBC336.15" ; colour "2" ; gene "pic1 ||| SPBC336.15 ||| SPBC685.01" ; note "N term exon may be incorrect" ; Alias "pic1" ; db_xref "SPD:47/47G12" ; synonym "SPBC685.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR156C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000939; condensed nuclear chromosome kinetochore
GO:0033205; cell cycle cytokinesis
GO:0005515; protein binding
GO:0005634; nucleus
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0032133; chromosome passenger complex" ; primary_name "pic1" ; product "INCENP, Pic1" ;
chromosome2 GeneDB mRNA 882324 882820 . + . mRNA SPBC713.08 ; systematic_id "SPBC713.08" ; colour "7" ; gene "tom13 ||| mim1 ||| SPBC713.08" ; Alias "mim1" ; db_xref "SPD:50/50A07" ; synonym "tom13" ; GO "GO:0031307; integral to mitochondrial outer membrane
GO:0070096; mitochondrial outer membrane translocase complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL026C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mim1" ; product "mitochondrial TOM complex assembly protein Mim1 (predicted)" ;
chromosome2 GeneDB mRNA 13572 15029 . + . mRNA SPBC1348.05 ; obsolete_name "SPAC1348.05" ; systematic_id "SPBC1348.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=similar to S. pombe SPAC750.02c and SPAPB1A11.01 and SPBPB2B2.16c and SPCC1529.01; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; gene "SPBC1348.05" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 1081719 1083291 . + . mRNA SPBC1734.11 ; systematic_id "SPBC1734.11" ; colour "7" ; gene "SPBC1734.11 ||| mas5" ; Alias "mas5" ; db_xref "SPD:19/19E03" ; GO "GO:0005829; cytosol
GO:0030544; Hsp70 protein binding
GO:0030433; ER-associated protein catabolism
GO:0006626; protein targeting to mitochondrion
GO:0045047; protein targeting to ER
GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL064C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mas5" ; product "DNAJ domain protein Mas5 (predicted)" ;
chromosome2 GeneDB mRNA 3968517 3970170 . - . mRNA SPBC26H8.09c ; systematic_id "SPBC26H8.09c" ; colour "2" ; gene "SPBC26H8.09c" ; note "repeat consensus HHDNSNKESTNLDDLNMLEEPK" ; Alias "snf59" ; db_xref "SPD:45/45A02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20060707 ||| term=orthologous to S. cerevisiae YFL049W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0010551; regulation of specific transcription from RNA polymerase II promoter
GO:0016514; SWI/SNF complex" ; primary_name "snf59" ; product "SWI/SNF complex subunit Snf59" ;
chromosome2 GeneDB mRNA 612436 613319 . + . mRNA SPBC839.07 ; systematic_id "SPBC839.07" ; colour "2" ; gene "ibp1 ||| SPBC839.07" ; Alias "ibp1" ; db_xref "SPD:03/03C08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:14508607; date=19700101 ||| term=orthologous to S. cerevisiae YGR203W and YPR200C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, itty bitty phosphatase; db_xref=PMID:14508607; cv=name_description; date=20090716" ; GO "GO:0090329; regulation of DNA-dependent DNA replication
GO:0006261; DNA replication
GO:0006261; DNA replication
GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation" ; primary_name "ibp1" ; product "Cdc25 family phosphatase Ibp1" ; EC_number "3.1.3.16" ;
chromosome2 GeneDB mRNA 2246366 2251252 . + . mRNA SPBC15C4.05 ; db_xref "SPD:30/30G06" ; systematic_id "SPBC15C4.05" ; colour "7" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC15C4.05" ; product "ATP-dependent RNA/DNA helicase (predicted)" ;
chromosome2 GeneDB mRNA 1287406 1290094 . + . mRNA SPBC3D6.10 ; systematic_id "SPBC3D6.10" ; colour "2" ; db_xref "SPD:25/25G11" ; Alias "apn2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16857169; date=20060823 ||| term=orthologous to S. cerevisiae YBL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006284; base-excision repair
GO:0034614; cellular response to reactive oxygen species
GO:0005634; nucleus
GO:0008311; double-stranded DNA specific 3'-5' exodeoxyribonuclease activity
GO:0004528; phosphodiesterase I activity" ; primary_name "apn2" ; product "AP-endonuclease Apn2" ;
chromosome2 GeneDB mRNA 2795703 2797676 . - . mRNA SPBC32F12.07c ; db_xref "SPD:15/15D01" ; systematic_id "SPBC32F12.07c" ; colour "10" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060726 ||| term=orthologous to S. cerevisiae YMR187C; date=19700101 ||| term=human MARCH9 ortholog; date=20080718 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC32F12.07c" ; product "ubiquitin-protein ligase E3, MARCH family (predicted)" ;
chromosome2 GeneDB mRNA 2967302 2968207 . + . mRNA SPBC2A9.12 ; systematic_id "SPBC2A9.12" ; colour "2" ; gene "orc6 ||| SPBC2A9.12 ||| SPBC2D10.02" ; Alias "orc6" ; db_xref "SPD:11/11C03" ; synonym "SPBC2D10.02" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0005656; pre-replicative complex
GO:0003688; DNA replication origin binding
GO:0006270; DNA replication initiation
GO:0006267; pre-replicative complex formation and maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR118C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "orc6" ; product "origin recognition complex subunit Orc6" ;
chromosome2 GeneDB mRNA 2798007 2798507 . - . mRNA SPBC32F12.08c ; systematic_id "SPBC32F12.08c" ; colour "2" ; gene "duo1 ||| SPBC32F12.08c" ; Alias "duo1" ; db_xref "SPD:04/04H07" ; GO "GO:0042729; DASH complex
GO:0007052; mitotic spindle organization and biogenesis
GO:0031134; sister chromatid biorientation
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16079915; date=19700101 ||| term=orthologous to S. cerevisiae YGL061C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "duo1" ; product "DASH complex subunit Duo1" ;
chromosome2 GeneDB mRNA 1542595 1543201 . + . mRNA SPBC83.17 ; db_xref "SPD:03/03H03" ; systematic_id "SPBC83.17" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0003713; transcription coactivator activity
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0010552; positive regulation of gene specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR298C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC83.17" ; product "transcriptional coactivator, multiprotein bridging factor Mbf1 (predicted)" ;
chromosome2 GeneDB mRNA 4006057 4006355 . - . mRNA SPBC3B9.22c ; systematic_id "SPBC3B9.22c" ; colour "2" ; gene "dad4 ||| SPBC3B9.22c" ; Alias "dad4" ; db_xref "SPD:52/52E03" ; GO "GO:0042729; DASH complex
GO:0007052; mitotic spindle organization and biogenesis
GO:0031134; sister chromatid biorientation" ; controlled_curation "term=orthologous to S. cerevisiae YDR320C-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "dad4" ; product "DASH complex subunit Dad4" ;
chromosome2 GeneDB mRNA 1308351 1311760 . - . mRNA SPBC30B4.04c ; systematic_id "SPBC30B4.04c" ; colour "2" ; gene "sol1 ||| SPBC30B4.04c" ; Alias "sol1" ; db_xref "SPD:47/47A01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Switch One Like; cv=gene_name_description; date=20061009 ||| term=ARID domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL016W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, sensitive to cold; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0016514; SWI/SNF complex
GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0016514; SWI/SNF complex" ; primary_name "sol1" ; product "SWI/SNF complex subunit Sol1" ; reserved_name "sol1" ;
chromosome2 GeneDB mRNA 1331066 1333822 . + . mRNA SPBC27B12.06 ; systematic_id "SPBC27B12.06" ; colour "7" ; gene "gpi13 ||| SPBC27B12.06" ; Alias "gpi13" ; db_xref "SPD:33/33H11" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0005783; endoplasmic reticulum
GO:0051377; mannose-ethanolamine phosphotransferase activity" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gpi13" ; product "pig-O (predicted)" ;
chromosome2 GeneDB mRNA 279664 281103 . + . mRNA SPBC800.13 ; db_xref "SPD:23/23B12" ; systematic_id "SPBC800.13" ; colour "7" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0005634; nucleus
GO:0051276; chromosome organization
GO:0000070; mitotic sister chromatid segregation
GO:0051382; kintochore assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=human CENP-T ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090919" ; gene "SPBC800.13" ; product "histone H4 variant, CENP-T ortholog (predicted)" ;
chromosome2 GeneDB mRNA 1648948 1649671 . - . mRNA SPBC21B10.12 ; systematic_id "SPBC21B10.12" ; colour "2" ; gene "rec6 ||| SPBC21B10.12" ; Alias "rec6" ; db_xref "SPD:40/40A02" ; GO "GO:0007131; meiotic recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "rec6" ; product "meiotic recombination protein Rec6" ;
chromosome2 GeneDB mRNA 1828521 1831050 . - . mRNA SPBC9B6.09c ; systematic_id "SPBC9B6.09c" ; colour "2" ; gene "mdl1 ||| SPBC9B6.09c" ; Alias "mdl1" ; db_xref "SPD:37/37G12" ; GO "GO:0005743; mitochondrial inner membrane
GO:0005739; mitochondrion
GO:0015440; peptide-transporting ATPase activity
GO:0006839; mitochondrial transport
GO:0006857; oligopeptide transport
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=orthologous to S. cerevisiae YLR188W and YPL270W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mdl1" ; product "mitochondrial peptide-transporting ATPase" ;
chromosome2 GeneDB mRNA 2473075 2475597 . + . mRNA SPBC12C2.03c ; db_xref "SPD:35/35E11" ; systematic_id "SPBC12C2.03c" ; colour "7" ; GO "GO:0050660; FAD binding
GO:0030586; [mehtionine synthase] reductase activity
GO:0009086; methionine biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC1783.01; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human MTRR ortholog; date=20100625 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100805" ; gene "SPBC12C2.03c" ; product "methionine synthase reductase (predicted)" ;
chromosome2 GeneDB mRNA 3319740 3322871 . - . mRNA SPBC17D11.07c ; systematic_id "SPBC17D11.07c" ; colour "7" ; gene "rpn2 ||| SPBC17D11.07c" ; Alias "rpn2" ; db_xref "SPD:47/47F01" ; GO "GO:0005634; nucleus
GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL075C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpn2" ; product "19S proteasome regulatory subunit Rpn2 (predicted)" ;
chromosome2 GeneDB mRNA 3738975 3741365 . - . mRNA SPBC13G1.08c ; systematic_id "SPBC13G1.08c" ; colour "2" ; gene "ash2 ||| SPBC13G1.08c" ; Alias "ash2" ; db_xref "SPD:27/27A10" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0016571; histone methylation
GO:0048189; Lid2 complex
GO:0000790; nuclear chromatin
GO:0051568; histone H3-K4 methylation
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=orthologous to S. cerevisiae YLR015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ash2" ; product "Ash2-trithorax family protein" ;
chromosome2 GeneDB mRNA 3271874 3272715 . - . mRNA SPBC25H2.07 ; systematic_id "SPBC25H2.07" ; colour "2" ; gene "tif11 ||| SPBC25H2.07" ; Alias "tif11" ; db_xref "SPD:39/39G10" ; GO "GO:0005840; ribosome
GO:0033592; RNA annealing activity
GO:0003725; double-stranded RNA binding
GO:0003743; translation initiation factor activity
GO:0006413; translational initiation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR260C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tif11" ; product "translation initiation factor eIF1A" ;
chromosome2 GeneDB mRNA 894422 897395 . - . mRNA SPBC216.01c ; systematic_id "SPBC216.01c" ; colour "7" ; gene "SPBC713.13c ||| SPBC216.01c" ; Alias "SPBC713.13c" ; db_xref "SPD:49/49E10" ; synonym "SPBC713.13c" ; GO "GO:0005634; nucleus
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL201C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC713.13c" ; product "DNA damage response protein (predicted)" ;
chromosome2 GeneDB mRNA 1221838 1223212 . - . mRNA SPBC725.09c ; systematic_id "SPBC725.09c" ; colour "2" ; gene "hob3 ||| SPBC725.09c" ; Alias "hob3" ; db_xref "SPD:10/10H09" ; GO "GO:0030479; actin cortical patch
GO:0051285; cell cortex of cell tip
GO:0031097; medial ring
GO:0005096; GTPase activator activity
GO:0008092; cytoskeletal protein binding
GO:0005515; protein binding
GO:0010687; actin filament organization
GO:0000915; cytokinesis, contractile ring formation
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BAR domain; cv=protein_family; date=20060913 ||| term=orthologous to S. cerevisiae YCR009C; date=19700101 ||| term=localization dependent on F- actin; db_xref=PMID:17363901; date=20070718 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Homolog Of Bin; date=20090707 ||| term=human BIN3 ortholog; db_xref=PMID:11274158; date=20101012 ||| term=complementation, functionally complemented by human BIN3; db_xref=PMID:11274158; date=20101012" ; primary_name "hob3" ; product "BAR adaptor protein Hob3" ;
chromosome2 GeneDB mRNA 4224045 4225644 . - . mRNA SPBC16G5.07c ; db_xref "SPD:22/22A12" ; systematic_id "SPBC16G5.07c" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC16G5.07c" ; product "prohibitin (predicted)" ;
chromosome2 GeneDB mRNA 3324029 3326011 . + . mRNA SPBC17D11.08 ; db_xref "SPD:25/25D01" ; systematic_id "SPBC17D11.08" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL247C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human DCAF7 ortholog; date=20100727" ; GO "GO:0080008; CUL4 RING ubiquitin ligase complex
GO:0016567; protein ubiquitination" ; gene "SPBC17D11.08" ; product "WD repeat protein, DDB1 and CUL4-associated factor 7 (predicted)" ;
chromosome2 GeneDB mRNA 3580218 3583626 . + . mRNA SPBC887.19 ; systematic_id "SPBC887.19" ; colour "7" ; gene "rft1 ||| SPBC887.19" ; Alias "rft1" ; db_xref "SPD:45/45C04" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006487; protein amino acid N-linked glycosylation
GO:0034202; glycolipid-translocating activity
GO:0034203; glycolipid translocation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBL020W; date=19700101 ||| term=human RFT1 ortholog; date=20071118 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rft1" ; product "Man5GlcNac2-PP-Dol translocation protein Rft1 (predicted)" ;
chromosome2 GeneDB mRNA 1407131 1409885 . - . mRNA SPBC17A3.04c ; systematic_id "SPBC17A3.04c" ; colour "7" ; gene "SPBC17A3.04c ||| mrs1 ||| mes1 ||| rar1" ; note "added name rar1 to remove conflicts, mrs1 and mes1 are already implemented as primary names for other genes" ; Alias "rar1" ; obsolete_name "pi042" ; db_xref "KEGG:MAP00271; ||| KEGG:MAP00450; ||| KEGG:MAP00970; ||| SPD:40/40H09" ; synonym "mrs1 ||| mes1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR264C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0004825; methionine-tRNA ligase activity
GO:0006431; methionyl-tRNA aminoacylation" ; primary_name "rar1" ; product "cytoplasmic methionine-tRNA ligase Mrs1 (predicted)" ; EC_number "6.1.1.10" ;
chromosome2 GeneDB mRNA 373791 376210 . + . mRNA SPBC106.01 ; systematic_id "SPBC106.01" ; colour "2" ; gene "mph1 ||| SPBC1271.16c ||| SPBC106.01 ||| SPBC243.01" ; Alias "mph1" ; db_xref "SPD:46/46D02" ; synonym "SPBC1271.16c ||| SPBC243.01" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0005816; spindle pole body
GO:0004674; protein serine/threonine kinase activity
GO:0007094; mitotic spindle checkpoint
GO:0034613; cellular protein localization
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=orthologous to S. cerevisiae YDL028C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9601094; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TKK ortholog; date=20100908" ; primary_name "mph1" ; product "dual specificity protein kinase Mph1" ; EC_number "2.7.11.1" ;
chromosome2 GeneDB mRNA 843106 845527 . - . mRNA SPBC36.03c ; db_xref "SPD:45/45D06" ; systematic_id "SPBC36.03c" ; colour "7" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC36.03c" ; product "spermidine family transporter (predicted)" ;
chromosome2 GeneDB mRNA 2098791 2099732 . + . mRNA SPBC18E5.13 ; systematic_id "SPBC18E5.13" ; colour "7" ; gene "SPBC18E5.13 ||| SPBC23G7.03" ; db_xref "SPD:08/08C04" ; synonym "SPBC23G7.03" ; GO "GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "mitochondrial translation initiation factor (predicted)" ;
chromosome2 GeneDB mRNA 3498434 3501952 . + . mRNA SPBPB7E8.02 ; db_xref "SPD:49/49D12" ; systematic_id "SPBPB7E8.02" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR177W and YDR505C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBPB7E8.02" ; product "PSP1 family protein" ;
chromosome2 GeneDB mRNA 38587 40277 . - . mRNA SPBC1348.14c ; systematic_id "SPBC1348.14c" ; colour "7" ; gene "ght7 ||| SPBPB8B6.01c ||| SPBC1348.14c" ; Alias "ght7" ; obsolete_name "SPAC1348.14c ||| SPAPB8B6.01c ||| SPAP8B6.01c" ; db_xref "SPD:50/50H01" ; synonym "SPBPB8B6.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005886; plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transporter" ; primary_name "ght7" ; product "hexose transporter Ght7 (predicted)" ;
chromosome2 GeneDB mRNA 4407363 4409670 . - . mRNA SPBC1289.13c ; db_xref "SPD:17/17G01" ; systematic_id "SPBC1289.13c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0042125; protein amino acid galactosylation" ; gene "SPBC1289.13c" ; product "alpha-1,2-galactosyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB mRNA 2495224 2496610 . + . mRNA SPBC557.05 ; db_xref "SPD:44/44D08" ; systematic_id "SPBC557.05" ; colour "10" ; GO "GO:0005509; calcium ion binding
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC557.05" ; product "arrestin" ;
chromosome2 GeneDB mRNA 3537089 3537425 . + . mRNA SPBC887.22 ; Alias "new19" ; systematic_id "SPBC887.22" ; GO "GO:0045047; protein targeting to ER
GO:0006465; signal peptide processing
GO:0005787; signal peptidase complex" ; controlled_curation "term=orthologous to S. cerevisiae YJR010C-A; date=20091208 ||| term=conserved in Fungi; date=20100427 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "7" ; primary_name "new19" ; gene "SPBC887.22" ; product "signal peptidase complex subunit Spc1 (predicted)" ;
chromosome2 GeneDB mRNA 730850 732887 . + . mRNA SPBC119.08 ; systematic_id "SPBC119.08" ; colour "2" ; db_xref "SPD:33/33D02" ; Alias "pmk1" ; synonym "spm1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR030C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18003976; date=20090110 ||| term=gene expression, expression induced by stress; db_xref=PMID:9135147; cv=gene_ex; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Rnc1; db_xref=PMID:17072883; date=20100825 ||| term=pathway, Mkh1-Pek1-Spm1 MAP kinase; cv=pathway; db_xref=PMID:10365961; date=19700101 ||| term=pathway, functions coordinately with the protein kinase C pathway; cv=pathway; db_xref=PMID:8943330; date=19700101" ; GO "GO:0000165; MAPKKK cascade
GO:0031505; cell wall organization and biogenesis
GO:0008360; regulation of cell shape
GO:0005515; protein binding
GO:0006883; sodium ion homeostasis
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0033205; cell cycle cytokinesis
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0033554; cellular response to stress
GO:0004707; MAP kinase activity
GO:0050850; positive regulation of calcium- mediated signaling
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "pmk1" ; product "MAP kinase Pmk1" ;
chromosome2 GeneDB mRNA 3875237 3879840 . - . mRNA SPBC211.03c ; db_xref "SPD:30/30G11" ; systematic_id "SPBC211.03c" ; colour "7" ; GO "GO:0005086; ARF guanyl-nucleotide exchange factor activity
GO:0006886; intracellular protein transport
GO:0005794; Golgi apparatus
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030036; actin cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR031C and YEL022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC211.03c" ; product "guanyl-nucleotide exchange factor (predicted)" ;
chromosome2 GeneDB mRNA 442344 443945 . - . mRNA SPBC428.02c ; systematic_id "SPBC428.02c" ; colour "2" ; gene "eca39 ||| SPBC582.12c ||| SPBC428.02c" ; Alias "eca39" ; db_xref "SPD:18/18A10" ; synonym "SPBC582.12c" ; GO "GO:0004084; branched-chain-amino-acid transaminase activity
GO:0009097; isoleucine biosynthesis
GO:0009098; leucine biosynthesis
GO:0009099; valine biosynthesis
GO:0005759; mitochondrial matrix
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0030170; pyridoxal phosphate binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YHR208W and YJR148W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "eca39" ; product "branched chain amino acid aminotransferase Eca39" ; EC_number "2.6.1.42" ;
chromosome2 GeneDB mRNA 631697 632675 . - . mRNA SPBC839.17c ; systematic_id "SPBC839.17c" ; colour "2" ; gene "fkh1 ||| SPBC839.17c" ; Alias "fkh1" ; obsolete_name "SPBC24E9.17c" ; db_xref "SPD:10/10B03" ; GO "GO:0000747; conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL135C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "fkh1" ; product "FKBP-type peptidyl-prolyl cis-trans isomerase Fkh1" ; EC_number "5.2.1.8" ;
chromosome2 GeneDB mRNA 1821701 1822693 . - . mRNA SPBC9B6.05c ; systematic_id "SPBC9B6.05c" ; colour "7" ; gene "lsm3 ||| SPBC9B6.05c" ; Alias "lsm3" ; db_xref "SPD:05/05E12" ; GO "GO:0003723; RNA binding
GO:0006402; mRNA catabolism
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0006364; rRNA processing
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005688; snRNP U6" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR438C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "lsm3" ; product "U6 snRNP-associated protein Lsm3 (predicted)" ;
chromosome2 GeneDB mRNA 3397891 3400094 . - . mRNA SPBC13A2.01c ; db_xref "SPD:41/41E09" ; systematic_id "SPBC13A2.01c" ; colour "7" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000243; commitment complex
GO:0005846; nuclear cap binding complex
GO:0000339; RNA cap binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL178W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC13A2.01c" ; product "nuclear cap-binding complex small subunit (predicted)" ;
chromosome2 GeneDB mRNA 3145450 3146873 . - . mRNA SPBC405.03c ; db_xref "SPD:15/15D11" ; systematic_id "SPBC405.03c" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0022857; transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML018C and YDR438W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20081124" ; gene "SPBC405.03c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 1375951 1378365 . - . mRNA SPBC8D2.10c ; systematic_id "SPBC8D2.10c" ; colour "2" ; gene "rmt3 ||| prmt3 ||| SPBC8D2.10c" ; Alias "rmt3" ; db_xref "SPD:33/33F05" ; synonym "rmt3" ; GO "GO:0005737; cytoplasm
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0008168; methyltransferase activity
GO:0005515; protein binding
GO:0016274; protein-arginine N-methyltransferase activity
GO:0043022; ribosome binding
GO:0019919; peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:15175657; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; qualifier=inferred from context; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16478994; date=20090110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Rps2; db_xref=PMID:15175657; date=20100825 ||| term=human PRMT3 ortholog; date=20100908" ; primary_name "rmt3" ; product "type I ribosomal protein arginine N- methyltransferase Rmt3" ; EC_number "2.1.1.-" ;
chromosome2 GeneDB mRNA 3991675 3992994 . - . mRNA SPBC3B9.02c ; systematic_id "SPBC3B9.02c" ; colour "2" ; gene "cwf28 ||| SPBC3B9.02c" ; Alias "cwf28" ; db_xref "SPD:18/18B03" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YOR148C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cwf28" ; product "splicing factor Cwf28" ;
chromosome2 GeneDB mRNA 1343502 1344272 . - . mRNA SPBC27B12.10c ; systematic_id "SPBC27B12.10c" ; colour "7" ; gene "tom7 ||| SPBC27B12.10c" ; Alias "tom7" ; db_xref "SPD:31/31C02" ; GO "GO:0015450; protein translocase activity
GO:0005198; structural molecule activity
GO:0030150; protein import into mitochondrial matrix
GO:0045040; protein import into mitochondrial outer membrane
GO:0045039; protein import into mitochondrial inner membrane
GO:0005742; mitochondrial outer membrane translocase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL070W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tom7" ; product "mitochondrial TOM complex subunit Tom7 (predicted)" ;
chromosome2 GeneDB mRNA 2177891 2179370 . + . mRNA SPBC17G9.05 ; systematic_id "SPBC17G9.05" ; colour "2" ; gene "cyp6 ||| SPBC17G9.05 ||| rct1" ; Alias "rct1" ; db_xref "SPD:22/22E11" ; synonym "cyp6" ; GO "GO:0000790; nuclear chromatin
GO:0003723; RNA binding
GO:0003755; peptidyl-prolyl cis-trans isomerase activity
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0008360; regulation of cell shape
GO:0070816; phosphorylation of RNA polymerase II C- terminal domain
GO:0006457; protein folding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17339332; date=20070807 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rct1" ; product "RRM-containing cyclophilin regulating transcription Rct1" ;
chromosome2 GeneDB mRNA 3433700 3434414 . + . mRNA SPBC4B4.11 ; db_xref "SPD:02/02H08" ; systematic_id "SPBC4B4.11" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR059W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC4B4.11" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 2774697 2776063 . + . mRNA SPBC685.03 ; db_xref "SPD:21/21B02" ; systematic_id "SPBC685.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC685.03" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4213540 4214751 . - . mRNA SPBC342.06c ; systematic_id "SPBC342.06c" ; colour "2" ; gene "rtt109 ||| SPBC342.06c" ; Alias "rtt109" ; db_xref "SPD:17/17E02" ; synonym "kat11" ; GO "GO:0005634; nucleus
GO:0032931; histone lysine N-acetyltransferase activity (H3-K56 specific)
GO:0030702; chromatin silencing at centromere
GO:0030702; chromatin silencing at centromere
GO:0016573; histone acetylation
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL002W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17369611; date=20070823 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Eukaryotes only; date=20091112 ||| term=species distribution, conserved in Fungi; date=20091112 ||| term=species distribution, conserved in Vertebrates; date=20091112 ||| term=species distribution, conserved in Metazoa; date=20091112" ; primary_name "rtt109" ; product "RTT109 family histone lysine acetyltransferase" ;
chromosome2 GeneDB mRNA 1538636 1541448 . - . mRNA SPBC83.16c ; db_xref "SPD:35/35C08" ; systematic_id "SPBC83.16c" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL082W and YKR018C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081209 ||| term=species distribution, conserved in Metazoa; date=20081209 ||| term=species distribution, conserved in Eukaryotes only; date=20081209 ||| term=human c9orf52 ortholog; date=20100728" ; gene "SPBC83.16c" ; product "conserved eukaryotic protein" ;
chromosome2 GeneDB mRNA 2205500 2207373 . + . mRNA SPBC14C8.02 ; systematic_id "SPBC14C8.02" ; colour "7" ; gene "SPBC14C8.02 ||| tim44" ; Alias "tim44" ; db_xref "SPD:22/22C05" ; GO "GO:0015450; protein translocase activity
GO:0030150; protein import into mitochondrial matrix
GO:0001405; presequence translocase-associated import motor
GO:0005759; mitochondrial matrix" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tim44" ; product "TIM23 translocase complex subunit Tim44 (predicted)" ;
chromosome2 GeneDB mRNA 2348960 2349435 . - . mRNA SPBC19G7.03c ; systematic_id "SPBC19G7.03c" ; colour "7" ; gene "rps3002 ||| rps30-2 ||| rps30 ||| SPBC19G7.03c" ; Alias "rps3002" ; obsolete_name "ysprs30" ; db_xref "SPD:39/39G07" ; synonym "rps30-2 ||| rps30" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR287C-A and YOR182C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=ncRNA in intron; date=20110201" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis
GO:0042254; ribosome biogenesis" ; primary_name "rps3002" ; product "40S ribosomal protein S30 (predicted)" ;
chromosome2 GeneDB mRNA 3647074 3650124 . - . mRNA SPBP8B7.09c ; systematic_id "SPBP8B7.09c" ; colour "7" ; gene "los1 ||| SPBP8B7.09c" ; Alias "los1" ; db_xref "SPD:47/47E08" ; GO "GO:0016363; nuclear matrix
GO:0005525; GTP binding
GO:0008536; Ran GTPase binding
GO:0000049; tRNA binding
GO:0006409; tRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=orthologous to S. cerevisiae YKL205W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "los1" ; product "karyopherin exportin T Los1 (predicted)" ;
chromosome2 GeneDB mRNA 3446620 3448218 . - . mRNA SPBC2G2.07c ; systematic_id "SPBC2G2.07c" ; colour "7" ; gene "SPBC2G2.07c ||| mug178" ; Alias "mug178" ; db_xref "SPD:07/07H01" ; GO "GO:0003735; structural constituent of ribosome
GO:0006413; translational initiation
GO:0005763; mitochondrial small ribosomal subunit
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL118W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug178" ; product "mitochondrial ribosomal protein subunit L51-b (predicted)" ;
chromosome2 GeneDB mRNA 3212323 3213702 . - . mRNA SPBC776.18c ; systematic_id "SPBC776.18c" ; colour "2" ; gene "pmh1 ||| mcr1 ||| SPBC776.18c" ; Alias "pmh1" ; db_xref "SPD:50/50D12" ; synonym "mcr1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDR460W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15829570; date=20090110 ||| term=name description, Mitotic Catastrophe Suppressor; date=20100825 ||| term=human MNAT1 ortholog; date=20110113" ; GO "GO:0000112; nucleotide-excision repair factor 3 complex
GO:0005675; transcription factor TFIIH complex
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006289; nucleotide-excision repair
GO:0016567; protein ubiquitination
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0006367; transcription initiation from RNA polymerase II promoter" ; primary_name "pmh1" ; product "transcription factor TFIIH complex subunit Pmh1" ;
chromosome2 GeneDB mRNA 3862313 3866987 . + . mRNA SPBC23E6.09 ; systematic_id "SPBC23E6.09" ; colour "2" ; gene "ssn6 ||| SPBC23E6.09" ; Alias "ssn6" ; db_xref "SPD:30/30D01" ; GO "GO:0005634; nucleus
GO:0006342; chromatin silencing
GO:0016481; negative regulation of transcription
GO:0003713; transcription coactivator activity
GO:0016565; general transcriptional repressor activity
GO:0016584; nucleosome spacing
GO:0003714; transcription corepressor activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR112C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100217 ||| term=human KDM6A ortholog; date=20100217" ; primary_name "ssn6" ; product "transcriptional corepressor Ssn6" ;
chromosome2 GeneDB mRNA 97242 98381 . - . mRNA SPBPB10D8.06c ; systematic_id "SPBPB10D8.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPL092W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport
GO:0005886; integral to plasma membrane" ; gene "SPBPB10D8.06c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 2290640 2291347 . - . mRNA SPBC16H5.15 ; db_xref "SPD:04/04H06" ; systematic_id "SPBC16H5.15" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to A. fumigatus Afu8g05100; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC16H5.15" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 2373956 2375996 . + . mRNA SPBC19G7.13 ; systematic_id "SPBC19G7.13" ; colour "2" ; gene "trf1 ||| SPBC19G7.13" ; Alias "tbf1" ; db_xref "SPD:23/23E08" ; synonym "trf1" ; GO "GO:0003691; double-stranded telomeric DNA binding
GO:0000723; telomere maintenance
GO:0006357; regulation of transcription from RNA poymerase II promoter
GO:0030528; transcription regulator activity
GO:0007093; mitotic cell cycle checkpoint
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0000781; chromosome, telomeric region" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, swollen cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19074598; date=20081217 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:19074598; date=20081217 ||| term=phenotype, cytokinesis defects, misplaced contractile ring; qualifier=deletion; db_xref=PMID:19074598; date=20081217 ||| term=Myb family; date=19700101 ||| term=subunit composition, homodimer; cv=subunit_composition; date=19700101 ||| term=orthologous to S. cerevisiae YPL128C; date=19700101 ||| term=human TRF1 homolog; evidence=ISS; db_xref=PMID:17977837; date=20071107 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17977837; date=20071107 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=telobox motif; evidence=ISS; date=20081217 ||| term=complementation, functionally complemented by P. carnii Trb1; db_xref=PMID:19074598; cv=complementation; date=20081217 ||| term=species distribution, conserved in Eukaryotes only; date=20090424 ||| term=species distribution, conserved in Metazoa; date=20090424 ||| term=species distribution, conserved in Vertebrates; date=20090424 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; primary_name "tbf1" ; product "DNA binding factor Trf1" ;
chromosome2 GeneDB mRNA 4121486 4122628 . - . mRNA SPBC56F2.03 ; db_xref "SPD:18/18A11" ; systematic_id "SPBC56F2.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR106W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "7" ; gene "SPBC56F2.03" ; product "actin-like protein Arp10 (predicted)" ;
chromosome2 GeneDB mRNA 2936173 2938651 . + . mRNA SPBC1703.12 ; systematic_id "SPBC1703.12" ; colour "2" ; gene "SPBC1703.12 ||| ubp9" ; db_xref "SPD:26/26F04" ; Alias "ubp9" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=orthologous to S. cerevisiae YER098W and YBL067C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human USP12 and USP46 ortholog; date=20101001" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016579; protein deubiquitination
GO:0032153; cell division site
GO:0051286; cell tip
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein locaization
GO:0034613; cellular protein locaization
GO:0006897; endocytosis" ; primary_name "ubp9" ; product "ubiquitin C-terminal hydrolase Ubp9" ;
chromosome2 GeneDB mRNA 1260941 1261988 . - . mRNA SPBC651.12c ; db_xref "SPD:10/10F03" ; systematic_id "SPBC651.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC651.12c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1719350 1720663 . - . mRNA SPBC2F12.10 ; db_xref "SPD:17/17E06" ; systematic_id "SPBC2F12.10" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR322W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC2F12.10" ; product "mitochondrial ribosomal protein subunit L35 (predicted)" ;
chromosome2 GeneDB mRNA 624426 625197 . - . mRNA SPBC839.14c ; db_xref "SPD:09/09E10" ; systematic_id "SPBC839.14c" ; colour "7" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0005737; cytoplasm
GO:0016192; vesicle-mediated transport
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL064W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC839.14c" ; product "methyltransferase involved in endocytosis (predicted)" ;
chromosome2 GeneDB mRNA 1561356 1562074 . - . mRNA SPBC27.01c ; db_xref "SPD:03/03A09" ; systematic_id "SPBC27.01c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0031965; nuclear membrane
GO:0000920; cell separation during cytokinesis
GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL149C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC27.01c" ; product "protein trafficking protein Pga2 (predicted)" ;
chromosome2 GeneDB mRNA 94483 95622 . - . mRNA SPBPB10D8.05c ; systematic_id "SPBPB10D8.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YPL092W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport
GO:0005886; integral to plasma membrane" ; gene "SPBPB10D8.05c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 3618117 3619540 . + . mRNA SPBC16D10.10 ; db_xref "SPD:23/23B06" ; systematic_id "SPBC16D10.10" ; colour "7" ; GO "GO:0006400; tRNA modification
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008251; tRNA specific adenosine deaminase activity
GO:0046982; protein heterodimerization activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC16D10.10" ; product "tRNA specific adenosine deaminase subunit Tad2 (predicted)" ;
chromosome2 GeneDB mRNA 3053595 3055131 . - . mRNA SPBC13E7.08c ; db_xref "SPD:44/44G11" ; systematic_id "SPBC13E7.08c" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0016593; Cdc73/Paf1 complex
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR123C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC13E7.08c" ; product "RNA polymerase II associated Paf1 complex (predicted)" ;
chromosome2 GeneDB mRNA 2268475 2270066 . + . mRNA SPBC16H5.14c ; systematic_id "SPBC16H5.14c" ; colour "10" ; gene "SPBC21H7.08 ||| SPBC16H5.14c" ; Alias "SPBC21H7.08" ; db_xref "SPD:13/13G04" ; synonym "SPBC21H7.08" ; controlled_curation "term=orthologous to S. cerevisiae YDL114W and YLR426W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016491; oxidoreductase activity
GO:0005739; mitochondrion" ; primary_name "SPBC21H7.08" ; product "short chain dehydrogenase DHRS family (predicted)" ;
chromosome2 GeneDB mRNA 4346585 4349272 . + . mRNA SPBC16C6.09 ; systematic_id "SPBC16C6.09" ; colour "2" ; note "O-glycoside mannosyltransferase 4" ; Alias "ogm4" ; db_xref "SPD:46/46G12" ; synonym "oma4" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PMT family; date=19700101 ||| term=PMT4 subfamily; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJR143C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15809069; date=19700101 ||| term=phenotype, sensitive to hygromycin 4; cv=phenotype; db_xref=PMID:15809069; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; GO "GO:0004169; dolichyl-phosphate-mannose-protein mannosyltransferase activity
GO:0035269; protein amino acid O-linked mannosylation
GO:0035269; protein amino acid O-linked mannosylation
GO:0005789; endoplasmic reticulum membrane
GO:0000752; agglutination during conjugation with cellular fusion
GO:0012505; endomembrane system
GO:0031502; dolichyl-phosphate-mannose-protein mannosyltransferase complex
GO:0046982; protein heterodimerization activity
GO:0000032; cell wall mannoprotein biosynthesis
GO:0071937; barrier septum formation involved in cell cycle cytokinesis" ; primary_name "ogm4" ; product "protein O-mannosyltransferase Ogm4" ; EC_number "2.4.1.109" ;
chromosome2 GeneDB mRNA 3106508 3108816 . - . mRNA SPBC1778.06c ; systematic_id "SPBC1778.06c" ; colour "2" ; gene "fim1 ||| SPBC1778.06c" ; db_xref "SPD:46/46C02" ; Alias "fim1" ; GO "GO:0032432; actin cable
GO:0030479; actin cortical patch
; contractile ring
; contractile ring
GO:0003779; actin binding
GO:0051015; actin filament binding
GO:0030674; protein binding, bridging
GO:0051666; actin cortical patch localization
GO:0051764; actin cross link formation
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0051017; actin filament bundle formation
GO:0008360; regulation of cell shape
GO:0000915; cytokinesis, contractile ring formation
GO:0033205; cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0030835; negative regulation of actin filament depolymerization
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=calponin homology (CH) domain; date=19700101 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YDR129C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11694585; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human PLS1 and PLS3 and LCP1 ortholog; date=20100217" ; primary_name "fim1" ; product "fimbrin" ;
chromosome2 GeneDB mRNA 1579127 1580165 . - . mRNA SPBC28F2.06c ; systematic_id "SPBC28F2.06c" ; colour "2" ; gene "mdm12 ||| SPBC28F2.06c" ; Alias "mdm12" ; db_xref "SPD:31/31H11" ; GO "GO:0000001; mitochondrion inheritance
GO:0007005; mitochondrion organization and biogenesis
GO:0005741; mitochondrial outer membrane
GO:0000002; mitochondrial genome maintenance
GO:0032865; Mdm10/Mdm12/Mmm1 complex
GO:0045040; protein import into mitochondrial outer membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL009C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mdm12" ; product "Mdm10/Mdm12/Mmm1 complex subunit Mdm12" ;
chromosome2 GeneDB mRNA 1926374 1928346 . + . mRNA SPBC16E9.07 ; systematic_id "SPBC16E9.07" ; colour "8" ; gene "SPBC16E9.07 ||| mug100" ; db_xref "SPD:13/13B12" ; Alias "mug100" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug100" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 489882 492151 . + . mRNA SPBC902.04 ; db_xref "SPD:46/46B12" ; systematic_id "SPBC902.04" ; colour "10" ; GO "GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RBMS6 ortholog; date=20091004" ; gene "SPBC902.04" ; product "RNA-binding protein" ;
chromosome2 GeneDB mRNA 10569 11009 . + . mRNA SPBC1348.03 ; obsolete_name "SPAC1348.03" ; systematic_id "SPBC1348.03" ; controlled_curation "term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; product "S. pombe specific 5Tm protein family" ;
chromosome2 GeneDB mRNA 3137575 3138080 . + . mRNA SPBC4C3.04c ; db_xref "SPD:01/01D12" ; systematic_id "SPBC4C3.04c" ; colour "7" ; GO "GO:0005085; guanyl-nucleotide exchange factor activity
GO:0008270; zinc ion binding
GO:0006892; post-Golgi vesicle-mediated transport
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC4C3.04c" ; product "guanyl-nucleotide exchange factor (predicted)" ;
chromosome2 GeneDB mRNA 1800250 1801302 . - . mRNA SPBC18H10.17c ; db_xref "SPD:05/05C10" ; systematic_id "SPBC18H10.17c" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000150; recombinase activity
GO:0003697; single-stranded DNA binding
GO:0006310; DNA recombination
GO:0000002; mitochondrial genome maintenance
GO:0006355; regulation of transcription, DNA dependent
GO:0030528; transcription regulator activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR296W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC18H10.17c" ; product "mitochondrial recombinase Mhr1 (predicted)" ;
chromosome2 GeneDB mRNA 3347954 3350370 . + . mRNA SPBC11C11.02 ; systematic_id "SPBC11C11.02" ; colour "2" ; gene "imp2 ||| SPBC11C11.02" ; db_xref "SPD:46/46G01" ; Alias "imp2" ; GO "GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0005515; protein binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YMR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100218 ||| term=human GAS7 ortholog; date=20100218" ; primary_name "imp2" ; product "contractile ring protein Imp2" ;
chromosome2 GeneDB mRNA 517344 517893 . + . mRNA SPBC1685.10 ; systematic_id "SPBC1685.10" ; colour "7" ; gene "rps27 ||| SPBC1685.10" ; Alias "rps27" ; db_xref "SPD:04/04G04" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis
GO:0006412; translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL156W and YHR021c; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps27" ; product "40S ribosomal protein S27 (predicted)" ;
chromosome2 GeneDB mRNA 1020296 1021303 . - . mRNA SPBC146.11c ; systematic_id "SPBC146.11c" ; colour "2" ; db_xref "SPD:14/14H06" ; Alias "mug97" ; synonym "meu33" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; db_xref=PMID:11376151; cv=gene_ex; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=warning, protein coding overlap with adjacent gene; date=20090917 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; GO "GO:0045132; meiotic chromosome segregation
GO:0030437; sporulation (sensu Fungi)" ; primary_name "mug97" ; product "meiotically upregulated gene Mug97" ;
chromosome2 GeneDB mRNA 3807714 3808795 . - . mRNA SPBC21C3.07c ; db_xref "SPD:16/16H01" ; systematic_id "SPBC21C3.07c" ; colour "10" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR239W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC21C3.07c" ; product "methyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 2361195 2363566 . - . mRNA SPBC19G7.07c ; systematic_id "SPBC19G7.07c" ; colour "7" ; gene "SPBC19G7.07c" ; db_xref "SPD:46/46F02" ; Alias "dmr1" ; GO "GO:0005739; mitochondrion
GO:0000372; Group I intron splicing
GO:0000002; miotochondrial genome maintenance
GO:0000963; mitochondrial RNA processing
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PPR domains; date=19700101 ||| term=orthologous to S. cerevisiae YGR150C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "dmr1" ; product "mitochondrial group I intron splicing factor Dmr1 (predicted)" ;
chromosome2 GeneDB mRNA 4142843 4144144 . - . mRNA SPBC1861.06c ; systematic_id "SPBC1861.06c" ; colour "12" ; gene "SPBC1861.06c ||| mug131" ; db_xref "SPD:22/22F06" ; Alias "mug131" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; primary_name "mug131" ; product "S. pombe specific UPF0300 family protein 4" ;
chromosome2 GeneDB mRNA 3157597 3161453 . + . mRNA SPBC609.01 ; db_xref "SPD:48/48E03" ; systematic_id "SPBC609.01" ; colour "10" ; GO "GO:0003723; RNA binding
GO:0004540; ribonuclease activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080901 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC609.01" ; product "ribonuclease II (RNB) family" ;
chromosome2 GeneDB mRNA 942932 944857 . + . mRNA SPBC646.11 ; systematic_id "SPBC646.11" ; colour "2" ; gene "cct6 ||| SPBC646.11" ; Alias "cct6" ; db_xref "SPD:36/36F12" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR188W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cct6" ; product "chaperonin-containing T-complex zeta subunit Cct6" ;
chromosome2 GeneDB mRNA 4064548 4065868 . + . mRNA SPBC1347.02 ; systematic_id "SPBC1347.02" ; colour "7" ; gene "fkbp39 ||| SPBC1347.02" ; db_xref "SPD:32/32D11" ; Alias "fkbp39" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=orthologous to S. cerevisiae YLR449W and YML074C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; primary_name "fkbp39" ; product "FKBP-type peptidyl-prolyl cis-trans isomerase (predicted)" ; EC_number "5.2.1.8" ;
chromosome2 GeneDB mRNA 310702 312246 . + . mRNA SPBC1773.13 ; db_xref "SPD:44/44F10" ; systematic_id "SPBC1773.13" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0009072; aromatic amino acid family metabolism
GO:0008793; aromatic-amino-acid transaminase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL202W and YHR137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1773.13" ; product "aromatic aminotransferase (predicted)" ;
chromosome2 GeneDB mRNA 2028833 2031140 . - . mRNA SPBP23A10.14c ; systematic_id "SPBP23A10.14c" ; colour "2" ; gene "ell1 ||| SPBP23A10.14c" ; Alias "ell1" ; db_xref "SPD:36/36C07" ; GO "GO:0032783; ELL-EFF RNA elongation complex
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0005515; protein binding
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0032968; positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045944; positive regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17150956; date=20061212 ||| term=name description, Eleven- nineteen Lysine rich in Leukemia; cv=name_description; date=20061213 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20090811 ||| term=phenotype, sensitive to 6- azauracil; cv=phenotype; db_xref=PMID:17150956; date=20091215 ||| term=human ELL ortholog; date=20100217" ; primary_name "ell1" ; product "RNA polymerase II transcription elongation factor SpELL" ;
chromosome2 GeneDB mRNA 3652211 3654191 . + . mRNA SPBP8B7.11 ; systematic_id "SPBP8B7.11" ; colour "7" ; gene "glp1 ||| nxt3 ||| SPBP8B7.11" ; Alias "nxt3" ; db_xref "SPD:24/24A07" ; synonym "glp1" ; GO "GO:0005737; cytoplasm
GO:0060628; regulation of ER to Golgi vesicle- mediated transport
GO:0016579; protein deubiquitination
GO:0005515; protein binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YNR051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, G3BP-Like Protein; cv=name_description; date=20090318 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nxt3" ; product "ubiquitin protease cofactor Glp1 (predicted)" ;
chromosome2 GeneDB mRNA 3478523 3479734 . + . mRNA SPBC1718.05 ; systematic_id "SPBC1718.05" ; colour "7" ; gene "trs31 ||| SPBC1718.05" ; Alias "trs31" ; db_xref "SPD:14/14B07" ; GO "GO:0030008; TRAPP complex
GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR472W; date=20080312 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trs31" ; product "TRAPP complex subunit Trs31 (predicted)" ;
chromosome2 GeneDB mRNA 4208265 4209694 . + . mRNA SPBC342.04 ; systematic_id "SPBC342.04" ; colour "2" ; db_xref "SPD:14/14B10" ; Alias "rpn1301" ; synonym "rpn13 ||| rpn13a" ; GO "GO:0006511; ubiquitin-dependent protein catabolic process
GO:0008541; proteeasome regulatory particle, lid subcomplex
GO:0000502; proteasome complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=orthologous to S. cerevisiae YLR421C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human ADRM1 ortholog; date=20100908" ; primary_name "rpn1301" ; product "19S proteasome regulatory subunit Rpn13a" ;
chromosome2 GeneDB mRNA 986383 987975 . - . mRNA SPBP35G2.11c ; db_xref "SPD:19/19A10" ; systematic_id "SPBP35G2.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-ZZ type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBP35G2.11c" ; product "transcription related zf-ZZ type zinc finger protein" ;
chromosome2 GeneDB mRNA 1490611 1491747 . + . mRNA SPBC11B10.03 ; systematic_id "SPBC11B10.03" ; colour "7" ; gene "SPBC11B10.03 ||| cog8" ; Alias "cog8" ; obsolete_name "pi008 ||| SPACTOKYO_453.28c" ; db_xref "SPD:50/50F05" ; GO "GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML071C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cog8" ; product "Golgi transport complex subunit Cog8 (predicted)" ;
chromosome2 GeneDB mRNA 3028685 3030224 . - . mRNA SPBC15D4.10c ; systematic_id "SPBC15D4.10c" ; colour "2" ; gene "amo1 ||| SPBC15D4.10c" ; Alias "amo1" ; db_xref "SPD:24/24A05" ; GO "GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0005816; spindle pole body
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0030951; establishment and/or maintenance of microtubule cytoskeleton polarity
GO:0040023; establishment of nucleus localization
GO:0031115; negative regulation of microtubule polymerization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, curved; db_xref=PMID:15797925; date=20100731 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Aberrent Microtubules when Overexpressed; cv=name_description; db_xref=PMID:15797925; date=20091107 ||| term=human NUPL2 ortholog; date=20091118" ; primary_name "amo1" ; product "nuclear rim protein Amo1" ;
chromosome2 GeneDB mRNA 2793222 2794275 . - . mRNA SPBC32F12.05c ; systematic_id "SPBC32F12.05c" ; colour "2" ; gene "cwf12 ||| SPBC32F12.05c" ; Alias "cwf12" ; obsolete_name "isy1" ; db_xref "SPD:10/10C04" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR050W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf12" ; product "complexed with Cdc5 protein Cwf12" ;
chromosome2 GeneDB mRNA 3310495 3312880 . - . mRNA SPBC17D11.04c ; systematic_id "SPBC17D11.04c" ; colour "7" ; gene "SPBC17D11.04c" ; Alias "nto1" ; db_xref "SPD:38/38B12" ; GO "GO:0000123; histone acetyltransferase complex
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0016573; histone acetylation
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YPR031W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nto1" ; product "histone acetyltransferase complex subunit Nto1 (predicted)" ;
chromosome2 GeneDB mRNA 3306554 3308630 . - . mRNA SPBC17D11.02c ; systematic_id "SPBC17D11.02c" ; colour "2" ; gene "SPBC17D11.02c ||| hrd1" ; Alias "hrd1" ; db_xref "SPD:46/46E04" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination
GO:0030433; ER-associated protein catabolic process
GO:0010620; negative regulation of transcription by transcription factor catabolism
GO:0005515; protein binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060726 ||| term=orthologous to S. cerevisiae YOL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SYVN1 ortholog; date=20091119 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20091119 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Sre1; db_xref=PMID:19520858; date=20100308" ; primary_name "hrd1" ; product "ubiquitin-protein ligase Hrd1, synviolin family" ; reserved_name "hrd1" ;
chromosome2 GeneDB mRNA 961217 963061 . - . mRNA SPBP35G2.16c ; systematic_id "SPBP35G2.16c" ; colour "2" ; gene "ecl2 ||| SPBP35G2.16c" ; obsolete_name "SPNGAF61" ; Alias "ecl2" ; GO "GO:0005634; nucleus
GO:0001300; chronological cell aging" ; controlled_curation "term=orthologous to S. cerevisiae YGR146C; date=20090410 ||| term=species distribution, conserved in Fungi; date=20090410 ||| term=species distribution, conserved in Fungi only; date=20090410 ||| term=name description, Extender of the Chronological Lifespan; db_xref=PMID:19352039; cv=name_description; date=20091124" ; primary_name "ecl2" ; product "extender of the chronological lifespan protein Ecl2" ;
chromosome2 GeneDB mRNA 1923622 1925394 . + . mRNA SPBC16E9.05 ; systematic_id "SPBC16E9.05" ; colour "2" ; gene "erg6 ||| SPBC16E9.05" ; Alias "erg6" ; db_xref "SPD:17/17H08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML008C; date=19700101 ||| term=phenotype, septation defects, multiple septa; db_xref=PMID:18310029; date=20091123 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0006696; ergosterol biosynthesis
GO:0003838; sterol 24-C-methyltransferase activity
GO:0005783; endoplasmic reticulum
GO:0006623; protein targeting to vacuole
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthesis
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane" ; primary_name "erg6" ; product "sterol 24-C-methyltransferase Erg6" ; EC_number "2.1.1.41" ;
chromosome2 GeneDB mRNA 1947985 1950255 . - . mRNA SPBC16E9.16c ; systematic_id "SPBC16E9.16c" ; colour "2" ; gene "lsd90 ||| SPBC16E9.16c" ; Alias "lsd90" ; db_xref "SPD:52/52C11" ; GO "GO:0042759; long-chain fatty acid biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Large and Small Daughter nuclei; cv=phenotype; db_xref=PMID:18079165; date=20080103 ||| term=species distribution, no apparent orthologs; date=20080103 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:18079165; date=20090505" ; primary_name "lsd90" ; product "Lsd90 protein" ;
chromosome2 GeneDB mRNA 1973367 1974065 . + . mRNA SPBC1A4.01 ; systematic_id "SPBC1A4.01" ; colour "2" ; gene "apc10 ||| SPBC1E8.06 ||| SPBC1A4.01" ; Alias "apc10" ; db_xref "SPD:40/40A07" ; synonym "SPBC1E8.06" ; GO "GO:0008054; cyclin catabolism
GO:0005680; anaphase-promoting complex
GO:0007092; anaphase-promoting complex activation during mitotic cell cycle
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9736616; date=19700101 ||| term=orthologous to S. cerevisiae YGL240W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:9736616; date=20100708" ; primary_name "apc10" ; product "anaphase-promoting complex subunit Apc10" ;
chromosome2 GeneDB mRNA 3093595 3094400 . - . mRNA SPBC30D10.02 ; db_xref "SPD:34/34D11" ; systematic_id "SPBC30D10.02" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003714; transcription corepressor activity
GO:0000122; negative regulation of transcription initiation from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YDR397C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC30D10.02" ; product "transcription corepressor (predicted)" ;
chromosome2 GeneDB mRNA 151814 152746 . - . mRNA SPBC1683.06c ; db_xref "SPD:13/13A09" ; systematic_id "SPBC1683.06c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0045437; uridine nucleosidase activity
GO:0008655; pyrimidine salvage
GO:0070635; nicotinamide riboside hydrolase activity
GO:0070636; nicotinic acid riboside hydrolase activity
GO:0050263; ribosylpyrimidine nucleosidase activity
GO:0034356; NAD biosynthesis via nicotinamide riboside salvage pathway
GO:0019358; nicotinate nucleoside salvage
GO:0046135; pyrimidine nucleoside catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR400W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC1683.06c" ; product "uridine ribohydrolase (predicted)" ;
chromosome2 GeneDB mRNA 532247 535263 . - . mRNA SPBC1685.15c ; systematic_id "SPBC1685.15c" ; colour "2" ; gene "klp6 ||| SPBC1685.15c ||| SPBC649.01c ||| sot2" ; Alias "klp6" ; db_xref "SPD:28/28E12" ; synonym "sot2 ||| SPBC649.01c" ; GO "GO:0003777; microtubule motor activity
GO:0000070; mitotic sister chromatid segregation
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0005816; spindle pole body
GO:0015630; microtubule cytoskeleton
GO:0000915; cytokinesis, contractile ring formation
GO:0007126; meiosis
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0031113; regulation of microtubule polymerization
GO:0031114; regulation of microtubule depolymerization
GO:0000778; kinetochore
GO:0051233; spindle midzone
GO:0008574; plus-end-directed microtubule motor activity
GO:0005873; plus-end kinesin complex
GO:0070507; regulation of microtubule cytoskeleton organization
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0034504; cellular protein localization to nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=Kip3 subfamily; date=19700101 ||| term=pathway, Ras1-Scd; cv=pathway; db_xref=PMID:11739790; date=19700101 ||| term=orthologous to S. cerevisiae YGL216W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=kinesin-8 family; date=20090316 ||| term=protein sequence feature, NLS; cv=sequence_feature; db_xref=PMID:18799626; date=20090316 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:18799626; cv=localization; date=20090316 ||| term=localization, klp5 and klp6 are interdependent for mitotic nuclear localization; db_xref=PMID:18799626; cv=localization; date=20090316 ||| term=localization, klp5 and klp6 enter the nucleus separately; db_xref=PMID:18799626; cv=localization; date=20090316 ||| term=phenotype, chromosome segregation defects, chromosome congression; qualifier=deletion; cv=phenotype; db_xref=PMID:18799626; date=20090316 ||| term=phenotype, cytoskeletal defect, long cytoplasmic microtubules; qualifier=deletion; cv=phenotype; db_xref=PMID:18799626; date=20090316 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201 ||| term=phenotype, resistance to TBZ; db_xref=PMID:11739790; cv=phenotype; date=20100216 ||| term=phenotype, resistance to microtubule depolymerizing drugs; db_xref=PMID:11739790; cv=phenotype; date=20100216" ; primary_name "klp6" ; product "kinesin-like protein Klp6" ;
chromosome2 GeneDB mRNA 2025365 2028461 . + . mRNA SPBP23A10.13 ; systematic_id "SPBP23A10.13" ; colour "2" ; gene "orc4 ||| orp4 ||| SPBP23A10.13" ; Alias "orc4" ; db_xref "SPD:34/34A02" ; synonym "orp4" ; GO "GO:0003688; DNA replication origin binding
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0005656; pre-replicative complex
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; db_xref=PMID:10077566; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YPR162C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "orc4" ; product "origin recognition complex subunit Orc4" ;
chromosome2 GeneDB mRNA 3367171 3369220 . - . mRNA SPBC11C11.11c ; systematic_id "SPBC11C11.11c" ; colour "7" ; gene "SPBC11C11.11c ||| SPBC3B8.12" ; db_xref "SPD:37/37C05" ; synonym "SPBC3B8.12" ; GO "GO:0005739; mitochondrion
GO:0004386; helicase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDR332W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; product "mitochondrial ATP-dependent DNA helicase Irc3 (predicted)" ;
chromosome2 GeneDB mRNA 2607219 2608429 . - . mRNA SPBC25B2.06c ; systematic_id "SPBC25B2.06c" ; colour "2" ; gene "SPBC25B2.06c ||| btb2" ; Alias "btb2" ; db_xref "SPD:16/16B12" ; GO "GO:0000151; ubiquitin ligase complex
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BTB/POZ domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "btb2" ; product "BTB/POZ domain protein Btb2" ;
chromosome2 GeneDB mRNA 1200555 1202314 . + . mRNA SPBC725.01 ; db_xref "SPD:22/22H05" ; systematic_id "SPBC725.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL106W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0004069; aspartate transaminase activity
GO:0019266; asparagine biosynthesis from oxaloacetate
GO:0006532; aspartate biosynthesis
GO:0006533; aspartate catabolism
GO:0005759; mitochondrial matrix" ; gene "SPBC725.01" ; product "aspartate aminotransferase (predicted)" ; EC_number "2.6.1.1" ;
chromosome2 GeneDB mRNA 2574663 2575482 . - . mRNA SPBC29A10.16c ; db_xref "SPD:51/51B06" ; systematic_id "SPBC29A10.16c" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0009055; electron carrier activity
GO:0006696; ergosterol biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL111C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC29A10.16c" ; product "cytochrome b5 (predicted)" ;
chromosome2 GeneDB mRNA 2908887 2909831 . - . mRNA SPBP4H10.18c ; db_xref "SPD:13/13C06" ; systematic_id "SPBP4H10.18c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBP4H10.18c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3597571 3604687 . + . mRNA SPBC16D10.05 ; systematic_id "SPBC16D10.05" ; colour "2" ; gene "mok13 ||| SPBC16D10.05" ; Alias "mok13" ; db_xref "SPD:34/34B09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20070309 ||| term=similar to S. pombe MOK1 and MOK11 and MOK14 and MOK12; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:16420355; date=20080430 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005619; fungal-type spore wall
GO:0005628; prospore membrane
GO:0047657; alpha-1,3-glucan synthase activity
GO:0004556; alpha-amylase activity
GO:0034411; alpha-1,3-glucan biosynthetic process
GO:0030476; ascospore wall assembly
GO:0033554; cellular response to stress
GO:0030476; ascospore wall assembly" ; primary_name "mok13" ; product "alpha-1,3-glucan synthase Mok13" ; EC_number "2.4.1.183" ;
chromosome2 GeneDB mRNA 505923 508981 . + . mRNA SPBC1685.05 ; db_xref "SPD:47/47F09" ; systematic_id "SPBC1685.05" ; colour "10" ; GO "GO:0004252; serine-type endopeptidase activity
GO:0006508; proteolysis
GO:0051603; proteolysis involved in cellular protein catabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=PDZ domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; gene "SPBC1685.05" ; product "serine protease (predicted)" ;
chromosome2 GeneDB mRNA 1278358 1279373 . + . mRNA SPBC3D6.05 ; systematic_id "SPBC3D6.05" ; colour "2" ; gene "ptp4 ||| SPBC3D6.05" ; Alias "ptp4" ; db_xref "SPD:15/15A12" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0004605; phosphatidate cytidylyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR311C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "ptp4" ; product "phosphatidate cytidylyltransferase Ptp4 (predicted)" ;
chromosome2 GeneDB mRNA 2375740 2377319 . - . mRNA SPBC19G7.14c ; systematic_id "SPBC19G7.14c" ; colour "7" ; gene "SPBC19G7.14c ||| cog5" ; Alias "cog5" ; db_xref "SPD:23/23A08" ; GO "GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cog5" ; product "Golgi transport complex subunit Cog5 (predicted)" ;
chromosome2 GeneDB mRNA 4058224 4059266 . - . mRNA SPBC215.14c ; systematic_id "SPBC215.14c" ; colour "2" ; gene "vps20 ||| SPBC215.14c" ; Alias "vps20" ; db_xref "SPD:07/07H06" ; GO "GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport
GO:0000815; ESCRT III complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps20" ; product "vacuolar sorting protein Vps20" ;
chromosome2 GeneDB mRNA 2037987 2040717 . + . mRNA SPBC29A3.01 ; systematic_id "SPBC29A3.01" ; colour "7" ; gene "SPBC29A3.01 ||| ccc2" ; Alias "ccc2" ; db_xref "SPD:39/39A07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Menkes/Wilson disease; date=20061010 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061010 ||| term=orthologous to S. cerevisiae YDR270W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000139; Golgi membrane
GO:0005524; ATP binding
GO:0004008; copper-exporting ATPase activity
GO:0060003; copper ion export
GO:0006878; cellular copper ion homeostasis" ; primary_name "ccc2" ; product "copper transporting ATPase Ccc2 (predicted)" ; EC_number "3.6.3.4" ;
chromosome2 GeneDB mRNA 3377709 3378587 . - . mRNA SPBC3B8.08 ; db_xref "SPD:07/07B03" ; systematic_id "SPBC3B8.08" ; colour "7" ; GO "GO:0000070; mitotic sister chromatid segregation
GO:0000778; kinetochore" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Sjogren's syndrome; date=20091228" ; gene "SPBC3B8.08" ; product "Sjogren's syndrome/scleroderma autoantigen 1 family (predicted)" ;
chromosome2 GeneDB mRNA 3365690 3367092 . + . mRNA SPBC11C11.10 ; systematic_id "SPBC11C11.10" ; colour "7" ; gene "SPBC11C11.10 ||| SPBC3B8.13c" ; db_xref "SPD:44/44C06" ; synonym "SPBC3B8.13c" ; GO "GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0009982; pseudouridine synthase activity
GO:0031119; tRNA pseudouridine synthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL292W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; product "tRNA pseudouridine synthase (predicted)" ; EC_number "4.2.1.70" ;
chromosome2 GeneDB mRNA 2578010 2580050 . - . mRNA SPBC2G5.02c ; db_xref "SPD:09/09D12" ; systematic_id "SPBC2G5.02c" ; colour "7" ; GO "GO:0005956; protein kinase CK2 complex
GO:0019887; protein kinase regulator activity
GO:0006468; protein amino acid phosphorylation
GO:0045449; regulation of transcription
GO:0007165; signal transduction
GO:0045859; regulation of protein kinase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR039W and YGL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; gene "SPBC2G5.02c" ; product "CK2 family regulatory subunit (predicted)" ;
chromosome2 GeneDB mRNA 1894433 1905532 . - . mRNA SPBP16F5.03c ; systematic_id "SPBP16F5.03c" ; colour "2" ; gene "SPBP16F5.03c ||| tra1" ; Alias "tra1" ; db_xref "SPD:50/50A01" ; GO "GO:0005515; protein binding
GO:0016573; histone acetylation
GO:0048017; inositol lipid-mediated signaling
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR099W; date=19700101 ||| term=TRRAP family protein; db_xref=PMID:18076567; date=20080104 ||| term=phosphoinositide 3-kinase family protein; date=20080104 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, small cells; db_xref=PMID:20194963; date=20101201" ; primary_name "tra1" ; product "SAGA complex phosphatidylinositol pseudokinase Tra1" ;
chromosome2 GeneDB mRNA 2547379 2548645 . - . mRNA SPBC29A10.06c ; db_xref "SPD:51/51C08" ; systematic_id "SPBC29A10.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC29A10.06c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 3448976 3452289 . + . mRNA SPBC2G2.08 ; systematic_id "SPBC2G2.08" ; colour "7" ; gene "ade9 ||| SPBC2G2.08" ; Alias "ade9" ; db_xref "SPD:47/47H11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR084W and YGR204W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004329; formate-tetrahydrofolate ligase activity
GO:0004477; methenyltetrahydrofolate cyclohydrolase activity
GO:0004488; methylenetetrahydrofolate dehydrogenase (NADP+) activity
GO:0009257; 10-formyltetrahydrofolate biosynthesis
GO:0009113; purine base biosynthesis
GO:0005524; ATP binding
GO:0046656; folic acid biosynthesis" ; primary_name "ade9" ; product "C-1-tetrahydrofolatesynthase/methylenetetrahydrofolatedehydrogenase/methylenetetrahydrofolatecyclohydrolase/ formyltetrahydrofolatesynthetase (predicted)" ; EC_number "6.3.4.3 ||| 1.5.1.5 ||| 1.5.1.15 ||| 2.3.1.16" ;
chromosome2 GeneDB mRNA 746035 747556 . + . mRNA SPBC119.14 ; systematic_id "SPBC119.14" ; colour "2" ; gene "rti1 ||| SPBC119.14" ; Alias "rti1" ; db_xref "SPD:24/24F11" ; synonym "rad22B" ; GO "GO:0000228; nuclear chromosome
GO:0000739; DNA strand annealing activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0000150; recombinase activity
GO:0000730; DNA recombinase assembly
GO:0006302; double-strand break repair
GO:0000711; meiotic DNA repair synthesis
GO:0000724; double-strand break repair via homologous recombination
GO:0003697; single-stranded DNA binding
GO:0051260; protein homooligomerization
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YML032C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rti1" ; product "Rad22 homolog Rti1" ;
chromosome2 GeneDB mRNA 3920065 3921549 . + . mRNA SPBC1604.06c ; db_xref "SPD:44/44G02" ; systematic_id "SPBC1604.06c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR144C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1604.06c" ; product "CBF/Mak21 family (predicted)" ;
chromosome2 GeneDB mRNA 3522799 3524065 . + . mRNA SPBC1105.09 ; systematic_id "SPBC1105.09" ; colour "2" ; gene "ubc15 ||| SPBC1105.09" ; note "Note ubc15 is truncated with respect to YDR054C" ; Alias "ubc15" ; db_xref "SPD:10/10D02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR054C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005634; nucleus
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0016567; protein ubiquitination" ; primary_name "ubc15" ; product "ubiquitin conjugating enzyme Ubc15" ; EC_number "6.3.2.19" ;
chromosome2 GeneDB mRNA 413556 414271 . + . mRNA SPBC106.18 ; systematic_id "SPBC106.18" ; colour "7" ; gene "rpl2501 ||| rpl25a ||| SPBC106.18" ; Alias "rpl2501" ; db_xref "SPD:31/31G08" ; synonym "rpl25a" ; GO "GO:0019843; rRNA binding
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0000027; ribosomal large subunit assembly
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL127W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "rpl2501" ; product "60S ribosomal protein L25 (predicted)" ;
chromosome2 GeneDB mRNA 2482246 2484401 . - . mRNA SPBC17F3.02 ; systematic_id "SPBC17F3.02" ; colour "2" ; gene "nak1 ||| orb3 ||| mor4 ||| SPBC17F3.02" ; Alias "nak1" ; db_xref "SPD:39/39F06" ; synonym "orb3 ||| mor4" ; GO "GO:0030479; actin cortical patch
GO:0051285; cell cortex of cell tip
GO:0005737; cytoplasm
GO:0031097; medial ring
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0051666; actin cortical patch localization
GO:0030037; actin filament reorganization during cell cycle
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0033554; cellular response to stress
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0006468; protein amino acid phosphorylation
GO:0010590; regulation of cell separation during cytokinesis
GO: SF 3077846; regulation of establishment and/or maintenance of cell polarity resulting in cell shape
GO:2000100; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12427731; date=19700101 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:8187760; date=20100731 ||| term=GCK subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YHR102W; date=19700101 ||| term=localization dependent on F- actin; db_xref=PMID:15731009; date=20070704 ||| term=localization dependent on Nak1 kinase activity; db_xref=PMID:15731009; date=20070704 ||| term=localization cell cycle dependent; db_xref=PMID:15731009; date=20070704 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:15731009; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "nak1" ; product "PAK-related kinase Nak1" ;
chromosome2 GeneDB mRNA 1470604 1472751 . + . mRNA SPBC32H8.10 ; systematic_id "SPBC32H8.10" ; colour "2" ; gene "cdk9 ||| SPBC32H8.10" ; Alias "cdk9" ; obsolete_name "SPACTOKYO_453.22" ; db_xref "SPD:49/49D01" ; GO "GO:0070693; P-TEFb-cap methyltransferase complex
GO:0005634; nucleus
GO:0008024; positive transcription elongation factor complex b
GO:0005524; ATP binding
GO:0008353; RNA polymerase II carboxy-terminal domain kinase activity
GO:0004693; cyclin-dependent protein kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
; RNA polymerase II CTD terminal phosphorylation
GO:0006468; protein amino acid phosphorylation
GO:0090039; regulation of gene-specific transcription elongation from RNA polymerase II promoter
GO:0006360; transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12904290; date=19700101 ||| term=orthologous to S. cerevisiae YPR161C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, septation defects; cv=phenotype; db_xref=PMID:19328067; date=20090712 ||| term=target is Rpb1; qualifier=phosphorylates; db_xref=PMID:19328067; date=20090712 ||| term=target is Spt5; qualifier=phosphorylates; db_xref=PMID:19328067; date=20090712" ; primary_name "cdk9" ; product "P-TEFb-associated cyclin-dependent protein kinase Cdk9" ;
chromosome2 GeneDB mRNA 3908679 3911537 . - . mRNA SPBC1604.12 ; db_xref "SPD:38/38E04" ; systematic_id "SPBC1604.12" ; colour "8" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC1604.12" ; product "sequence orphan" ; note "multiple TSS" ;
chromosome2 GeneDB mRNA 174842 175945 . + . mRNA SPBC1198.02 ; systematic_id "SPBC1198.02" ; colour "2" ; gene "dea2 ||| SPBC1198.02" ; Alias "dea2" ; db_xref "SPD:17/17D01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, immunodeficiency; date=20060825 ||| term=orthologous to S. cerevisiae YNL141W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=catalytic activity, kcat/km 0.46; db_xref=PMID:18673302; date=20100707" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000034; adenine deaminase activity
GO:0006146; adenine catabolism
GO:0043101; purine salvage
GO:0000034; adenine deaminase activity
GO:0043101; purine salvage" ; primary_name "dea2" ; product "adenine deaminase Dea2" ; EC_number "3.5.4.2" ;
chromosome2 GeneDB mRNA 404099 406626 . - . mRNA SPBC106.14c ; systematic_id "SPBC106.14c" ; colour "7" ; gene "sda1 ||| SPBC106.14c" ; Alias "sda1" ; db_xref "SPD:37/37F12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR245C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SDAD1 ortholog; date=20100909" ; GO "GO:0005634; nucleus
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0042255; ribosome assembly
GO:0007089; traversing start control point of mitotic cell cycle" ; primary_name "sda1" ; product "SDA1 family protein (predicted)" ; reserved_name "sda1" ;
chromosome2 GeneDB mRNA 2533330 2535569 . + . mRNA SPBC29A10.01 ; systematic_id "SPBC29A10.01" ; colour "2" ; gene "ccr1 ||| SPBC365.17 ||| SPBC29A10.01" ; Alias "ccr1" ; db_xref "SPD:40/40G09" ; synonym "SPBC365.17" ; GO "GO:0006696; ergosterol biosynthesis
GO:0005789; endoplasmic reticulum membrane
GO:0003958; NADPH-hemoprotein reductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ccr1" ; product "NADPH-cytochrome p450 reductase" ; EC_number "1.6.2.4" ;
chromosome2 GeneDB mRNA 1320692 1322324 . + . mRNA SPBC30B4.08 ; systematic_id "SPBC30B4.08" ; colour "2" ; note "the exonucleolytic trimming to generate mature 3'- end of 5.8S rRNA from tricistronic rRNA transcript function is performed by S. cerevisiae ortholog NRG2 which is not orthologous to eri1 PMID:18438419" ; db_xref "SPD:18/18A07" ; Alias "eri1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SAP domain; db_xref=PMID:16797182; date=20060922 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:16797182; date=20100126" ; GO "GO:0005737; cytoplasm
GO:0000175; 3'-5'-exoribonuclease activity
GO:0032296; double-stranded RNA-specific ribonuclease activity
GO:0000467; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0060906; negative regulation of chromatin silencing by small RNA" ; primary_name "eri1" ; product "double-strand siRNA ribonuclease Eri1" ;
chromosome2 GeneDB mRNA 1074380 1075815 . + . mRNA SPBC1734.08 ; systematic_id "SPBC1734.08" ; colour "2" ; gene "SPBC1734.08 ||| hse1" ; Alias "hse1" ; db_xref "SPD:32/32H12" ; GO "GO:0005768; endosome
GO:0045324; late endosome to vacuole transport
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0033565; ESCRT-0 complex
GO:0031321; prospore formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YHL002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "hse1" ; product "STAM like protein Hse1" ;
chromosome2 GeneDB mRNA 2690818 2691581 . + . mRNA SPBC4F6.04 ; systematic_id "SPBC4F6.04" ; colour "7" ; gene "rpl2502 ||| rpl25b ||| rpl23a-2 ||| SPBC4F6.04" ; Alias "rpl2502" ; db_xref "SPD:40/40A06" ; synonym "rpl25b ||| rpl23a-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0000027; ribosomal large subunit assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL127W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "rpl2502" ; product "60S ribosomal protein L25 (predicted)" ;
chromosome2 GeneDB mRNA 656117 657755 . - . mRNA SPBC947.09 ; db_xref "SPD:43/43C01" ; systematic_id "SPBC947.09" ; colour "10" ; GO "GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR533C and YPL280W and YOR391C and YMR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC947.09" ; product "ThiJ domain protein" ;
chromosome2 GeneDB mRNA 4341639 4343368 . - . mRNA SPBC16C6.07c ; systematic_id "SPBC16C6.07c" ; colour "7" ; gene "rpt1 ||| SPBC16C6.07c" ; Alias "rpt1" ; db_xref "SPD:45/45B07" ; GO "GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0004175; endopeptidase activity
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YKL145W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpt1" ; product "19S proteasome regulatory subunit Rpt1 (predicted)" ;
chromosome2 GeneDB mRNA 3912870 3913612 . - . mRNA SPBC1604.10 ; systematic_id "SPBC1604.10" ; colour "2" ; gene "srb7 ||| med21 ||| SPBC1604.10" ; Alias "srb7" ; db_xref "SPD:05/05H06" ; synonym "med21" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0006366; transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR308C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MED21 ortholog; date=20110113" ; primary_name "srb7" ; product "mediator complex subunit Srb7" ;
chromosome2 GeneDB mRNA 1563902 1565770 . + . mRNA SPBC27.03 ; systematic_id "SPBC27.03" ; colour "8" ; db_xref "SPD:26/26C10" ; Alias "meu25" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu25" ; product "sequence orphan Meu25" ;
chromosome2 GeneDB mRNA 2322919 2324623 . + . mRNA SPBC24C6.03 ; db_xref "KEGG:MAP00330; ||| KEGG:MAP00970; ||| SPD:20/20D12" ; systematic_id "SPBC24C6.03" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER087W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004827; proline-tRNA ligase activity
GO:0006433; prolyl-tRNA aminoacylation" ; gene "SPBC24C6.03" ; product "mitochondrial proline-tRNA ligase (predicted)" ; EC_number "6.1.1.15" ;
chromosome2 GeneDB mRNA 2169967 2171289 . - . mRNA SPBC17G9.02c ; db_xref "SPD:44/44B04" ; systematic_id "SPBC17G9.02c" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0016593; Cdc73/Paf1 complex
GO:0016944; RNA polymerase II transcription elongation factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR418C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human HRPT2 ortholog; date=20100217" ; gene "SPBC17G9.02c" ; product "RNA polymerase II accessory factor, Cdc73 family (predicted)" ;
chromosome2 GeneDB mRNA 4110031 4112840 . + . mRNA SPBC56F2.05c ; db_xref "SPD:19/19A12" ; systematic_id "SPBC56F2.05c" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC56F2.05c" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB mRNA 1240151 1241307 . + . mRNA SPBC651.02 ; db_xref "SPD:16/16A07" ; systematic_id "SPBC651.02" ; colour "7" ; GO "GO:0047710; bis(5'-adenosyl)-triphosphatase activity
GO:0015964; diadenosine triphosphate catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC651.02" ; product "bis(5'-adenosyl)-triphosphatase (predicted)" ;
chromosome2 GeneDB mRNA 44810 46831 . - . mRNA SPBPB8B6.02c ; systematic_id "SPBPB8B6.02c" ; colour "7" ; gene "SPBPB8B6.02c" ; obsolete_name "SPAP8B6.02c" ; db_xref "SPD:51/51A04" ; controlled_curation "term=orthologous to S. cerevisiae YHL016C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0015204; urea transporter activity
GO:0071918; urea transmembrane transport
GO:0005886; plasma membrane" ; product "urea transporter (predicted)" ;
chromosome2 GeneDB mRNA 3150556 3152652 . + . mRNA SPBC405.06 ; db_xref "SPD:19/19H02" ; systematic_id "SPBC405.06" ; colour "7" ; GO "GO:0030544; Hsp70 protein binding
GO:0005739; mitochondrion
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR090w; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; gene "SPBC405.06" ; product "DNAJ protein Xdj1 (predicted)" ;
chromosome2 GeneDB mRNA 456575 458382 . - . mRNA SPBC428.08c ; systematic_id "SPBC428.08c" ; colour "2" ; gene "clr4 ||| SPBC428.08c" ; Alias "clr4" ; db_xref "SPD:23/23G02" ; GO "GO:0043494; Rik1-E3 ubiquitin ligase complex
GO:0031934; mating-type region heterochromatin
GO:0031618; nuclear centric heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0046974; histone lysine N-methyltransferase activity (H3-K9 specific)
GO:0005515; protein binding
GO:0090065; regulation of RNA interference, production of siRNA
GO:0051315; attachment of spindle microtubules to kinetochore during mitosis
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0007535; donor selection
GO:0051567; histone H3 K9 methylation
GO:0030989; horsetail nuclear movement
GO:0045141; telomere clustering
GO:0030148; chromatin silencing by small RNA
GO:0032015; regulation of Ran protein signal transduction
GO:0031507; heterochromatin formation" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=chromodomain protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, accumulation of non- coding outer repeat transcripts; cv=phenotype; date=20100318 ||| term=name description, Cryptic Loci Regulator; date=20100727 ||| term=human SUV39H1 and SUV39H2 ortholog; date=20100908" ; primary_name "clr4" ; product "histone H3 methyltransferase Clr4" ;
chromosome2 GeneDB mRNA 3883765 3885666 . + . mRNA SPBC211.06 ; systematic_id "SPBC211.06" ; colour "2" ; gene "gfh1 ||| SPBC211.06" ; Alias "gfh1" ; db_xref "SPD:45/45F10" ; GO "GO:0005816; spindle pole body
GO:0000923; equatorial microtubule organizing center
GO:0000930; gamma-tubulin complex
GO:0030953; astral microtubule organization and biogenesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=GRIP domain; db_xref=PMID:15004232; date=19700101 ||| term=human GPC4 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Gcp Four Homolog; cv=name_description; date=20090826" ; primary_name "gfh1" ; product "gamma tubulin complex subunit Gfh1" ;
chromosome2 GeneDB mRNA 4362975 4363750 . - . mRNA SPBC1539.01c ; db_xref "SPD:42/42E12" ; systematic_id "SPBC1539.01c" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0004540; ribonuclease activity
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Ribonuclease_3 family; date=19700101 ||| term=orthologous to S. cerevisiae YLR312W-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1539.01c" ; product "mitochondrial ribosomal protein subunit L15 (predicted)" ;
chromosome2 GeneDB mRNA 83337 85483 . - . mRNA SPBPB10D8.02c ; db_xref "SPD:51/51A01" ; systematic_id "SPBPB10D8.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006790; sulfur metabolism
GO:0004065; arylsulfatase activity" ; gene "SPBPB10D8.02c" ; product "arylsulfatase (predicted)" ; EC_number "3.1.6.1" ;
chromosome2 GeneDB mRNA 2161542 2162133 . + . mRNA SPBC1711.14 ; systematic_id "SPBC1711.14" ; colour "2" ; gene "rec15 ||| SPBC1711.14" ; Alias "rec15" ; db_xref "SPD:31/31F03" ; GO "GO:0007131; meiotic recombination
GO:0045143; homologous chromosome segregation
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "rec15" ; product "meiotic recombination protein Rec15" ;
chromosome2 GeneDB mRNA 2344368 2347731 . - . mRNA SPBC19G7.01c ; systematic_id "SPBC19G7.01c" ; colour "2" ; gene "msh2 ||| SPBC24C6.12c ||| SPBC19G7.01c ||| swi8 ||| mut3" ; Alias "msh2" ; db_xref "SPD:38/38A03" ; synonym "swi8 ||| mut3 ||| SPBC24C6.12c" ; GO "GO:0000228; nuclear chromosome
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0032135; DNA insertion or deletion binding
GO:0000403; Y-form DNA binding
GO:0000406; double-strand/single-strand DNA junction binding
GO:0000400; four-way junction DNA binding
GO:0032137; guanine/thymine mispair binding
GO:0000404; loop DNA binding
GO:0032138; single base insertion or deletion binding
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0007534; gene conversion at mating-type locus
GO:0043570; maintenance of DNA repeat elements
GO:0006298; mismatch repair
GO:0006298; mismatch repair
GO:0006298; mismatch repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer, hereditary nonpolyposis colon; date=20060724 ||| term=disease associated, cancer; date=20060724 ||| term=orthologous to S. cerevisiae YOL090W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MSH2 ortholog; date=20100217" ; primary_name "msh2" ; product "MutS protein homolog 2" ;
chromosome2 GeneDB mRNA 2720540 2722492 . - . mRNA SPBC4F6.16c ; systematic_id "SPBC4F6.16c" ; colour "2" ; gene "ero11 ||| SPBC4F6.16c" ; Alias "ero11" ; db_xref "SPD:21/21G03" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0015035; protein disulfide oxidoreductase activity
GO:0006457; protein folding
GO:0006467; protein thiol-disulfide exchange
GO:0034975; protein folding in the endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML130C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; primary_name "ero11" ; product "ER oxidoreductin Ero1a" ;
chromosome2 GeneDB mRNA 481076 483790 . - . mRNA SPBC428.20c ; systematic_id "SPBC428.20c" ; colour "2" ; gene "alp6 ||| SPBC428.20c ||| SPBC902.01c" ; Alias "alp6" ; db_xref "SPD:38/38G01" ; synonym "SPBC902.01c" ; GO "GO:0000216; M/G1 transition of mitotic cell cycle
GO:0000930; gamma-tubulin complex
GO:0005816; spindle pole body
GO:0000923; equatorial microtubule organizing center
GO:0007094; mitotic spindle checkpoint
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0090307; spindle assembly involved in mitosis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0007020; microtubule nucleation
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, microtubule organization defects, long microtubules; qualifier=ts; db_xref=PMID:11080156; date=20100907 ||| term=phenotype, cut; qualifier=ts|conditional|in_presence_of_TBC; db_xref=PMID:11080156; date=20100907 ||| term=phenotype, spindle defects, monopolar spindle; qualifier=ts; db_xref=PMID:11080156; date=20100907 ||| term=orthologous to S. cerevisiae YNL126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "alp6" ; product "gamma tubulin complex Spc98/GCP3 subunit Alp6" ;
chromosome2 GeneDB mRNA 3423247 3424457 . - . mRNA SPBC4B4.07c ; systematic_id "SPBC4B4.07c" ; colour "2" ; gene "usp102 ||| SPBC4B4.07c ||| mud1" ; Alias "usp102" ; db_xref "SPD:11/11E01" ; synonym "mud1" ; GO "GO:0005685; snRNP U1
GO:0003723; RNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YBR119W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "usp102" ; product "U1 snRNP-associated protein Usp102" ;
chromosome2 GeneDB mRNA 387650 388806 . - . mRNA SPBC106.08c ; systematic_id "SPBC106.08c" ; colour "10" ; gene "SPBC106.08c ||| mug2" ; Alias "mug2" ; obsolete_name "B13958-1" ; db_xref "SPD:12/12B03" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; primary_name "mug2" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 1" ;
chromosome2 GeneDB mRNA 4441340 4441609 . - . mRNA SPBC8E4.12c ; systematic_id "SPBC8E4.12c" ; colour "2" ; gene "ecl3 ||| SPBC8E4.12c" ; obsolete_name "SPNG1995-96" ; Alias "ecl3" ; GO "GO:0005634; nucleus
GO:0001300; chronological cell aging" ; controlled_curation "term=orthologous to S. cerevisiae YGR146C; date=20090410 ||| term=species distribution, conserved in Fungi; date=20090410 ||| term=species distribution, conserved in Fungi only; date=20090410" ; primary_name "ecl3" ; product "extender of the chronological lifespan protein Ecl3" ;
chromosome2 GeneDB mRNA 1112735 1113159 . + . mRNA SPBC1709.20 ; systematic_id "SPBC1709.20" ; colour "7" ; gene "pop8 ||| SPBC1709.20" ; Alias "pop8" ; db_xref "SPD:51/51H08" ; GO "GO:0000172; ribonuclease MRP complex
GO:0005655; nucleolar ribonuclease P complex
GO:0006364; rRNA processing
GO:0008033; tRNA processing
GO:0004526; ribonuclease P activity
GO:0000171; ribonuclease MRP activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL018C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "pop8" ; product "RNase P and RNase MRP subunit Pop8 (predicted)" ;
chromosome2 GeneDB mRNA 2491884 2495011 . + . mRNA SPBC557.04 ; systematic_id "SPBC557.04" ; colour "2" ; gene "ppk29 ||| SPBC557.04" ; Alias "ppk29" ; db_xref "SPD:39/39A10" ; GO "GO:0030479; actin cortical patch
GO:0004674; protein serine/threonine kinase activity
GO:0000147; actin cortical patch assembly
GO:0006468; protein amino acid phosphorylation
GO:0007015; actin filament organization
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNL020C and YIL095W and YBR059C; date=19700101 ||| term=modification, phosphorylated; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk29" ; product "Ark1/Prk1 family protein kinase Ppk29" ;
chromosome2 GeneDB mRNA 3742413 3744006 . + . mRNA SPBC13G1.09 ; db_xref "SPD:21/21E10" ; systematic_id "SPBC13G1.09" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing
GO:0000447; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR247C; date=19700101 ||| term=human BSYL ortholog; date=20100902 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; gene "SPBC13G1.09" ; product "bystin family U3 and U14 snoRNA associated protein (predicted)" ;
chromosome2 GeneDB mRNA 3717577 3719998 . - . mRNA SPBC25D12.03c ; systematic_id "SPBC25D12.03c" ; colour "2" ; gene "mcm7 ||| SPBC25D12.03c" ; Alias "mcm7" ; db_xref "SPD:33/33G03" ; GO "GO:0006270; DNA replication initiation
GO:0042555; MCM complex
GO:0000084; S phase of mitotic cell cycle
GO:0005656; pre-replicative complex
GO:0006271; DNA strand elongation during DNA replication
GO:0004003; ATP-dependent DNA helicase activity
GO:0031261; DNA replication preinitiation complex
GO:0031390; nuclear replication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:1160526; date=20100708 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=orthologous to S. cerevisiae YBR202W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "mcm7" ; product "MCM complex subunit Mcm7" ;
chromosome2 GeneDB mRNA 172655 174262 . + . mRNA SPBC1198.01 ; db_xref "SPD:20/20D04" ; systematic_id "SPBC1198.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; colour "7" ; gene "SPBC1198.01" ; product "glutathione-dependent formaldehyde dehydrogenase (predicted)" ;
chromosome2 GeneDB mRNA 4094301 4096227 . + . mRNA SPBC56F2.09c ; systematic_id "SPBC56F2.09c" ; colour "2" ; gene "arg5 ||| SPBC56F2.09c" ; Alias "arg5" ; db_xref "KEGG:MAP00240; ||| KEGG:MAP00251; ||| SPD:19/19H10" ; GO "GO:0006526; arginine biosynthesis
GO:0005951; carbamoyl-phosphate synthase complex
GO:0004088; carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0000050; urea cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR303W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arg5" ; product "arginine specific carbamoyl-phosphate synthase subunit Arg5 (predicted)" ;
chromosome2 GeneDB mRNA 3089967 3090780 . + . mRNA SPBC30D10.05c ; db_xref "SPD:09/09A08" ; systematic_id "SPBC30D10.05c" ; colour "7" ; GO "GO:0006729; tetrahydrobiopterin biosynthetic process
GO:0004757; sepiapterin reductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR035C and YIR036C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SPR ortholog; date=20100720 ||| term=disease associated, dystonia; date=20100720 ||| term=disease associated, neurological disorders; date=20100720" ; gene "SPBC30D10.05c" ; product "sepiapterin reductase (predicted)" ; EC_number "1.1.1.153" ;
chromosome2 GeneDB mRNA 3964092 3965931 . - . mRNA SPBC26H8.07c ; systematic_id "SPBC26H8.07c" ; colour "2" ; gene "nda3 ||| ben1 ||| alp12 ||| SPBC26H8.07c" ; Alias "nda3" ; db_xref "SPD:33/33C09" ; synonym "ben1 ||| alp12" ; GO "GO:0005874; microtubule
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0005525; GTP binding
GO:0005200; structural constituent of cytoskeleton
GO:0007163; establishment and/or maintenance of cell polarity
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL037W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "nda3" ; product "tubulin beta Nda3" ;
chromosome2 GeneDB mRNA 157555 159512 . + . mRNA SPBC1683.08 ; systematic_id "SPBC1683.08" ; colour "2" ; gene "ght4 ||| SPBC1683.08" ; Alias "ght4" ; db_xref "SPD:35/35A06" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; primary_name "ght4" ; product "hexose transporter Ght4" ;
chromosome2 GeneDB mRNA 3822494 3824136 . - . mRNA SPBC21C3.15c ; db_xref "SPD:25/25C10" ; systematic_id "SPBC21C3.15c" ; colour "10" ; GO "GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR039C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC21C3.15c" ; product "aldehyde dehydrogenase (predicted)" ;
chromosome2 GeneDB mRNA 4519772 4520391 . - . mRNA SPBCPT2R1.06c ; systematic_id "SPBCPT2R1.06c" ; pseudo "_no_value" ; controlled_curation "term=warning, frameshifted; cv=warning; date=19700101" ; colour "13" ; gene "SPBCPT2R1.06c" ; product "pseudogene" ;
chromosome2 GeneDB mRNA 132353 136275 . + . mRNA SPBC1683.01 ; db_xref "SPD:45/45F07" ; systematic_id "SPBC1683.01" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0005315; inorganic phosphate transporter activity
GO:0035435; phosphate transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML123C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC1683.01" ; product "inorganic phosphate transporter (predicted)" ;
chromosome2 GeneDB mRNA 1500248 1501951 . + . mRNA SPBC11B10.09 ; systematic_id "SPBC11B10.09" ; colour "2" ; obsolete_name "pi002 ||| SPACTOKYO_453.34" ; db_xref "SPD:50/50D08" ; Alias "cdc2" ; synonym "swo2 ||| cdk1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:958201; date=20100730 ||| term=orthologous to S. cerevisiae YBR160W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=CDK family kinase; date=20090122 ||| term=target of Mcs6; residue=Thr167; date=20090717 ||| term=target of Cdc23; qualifier=dephosphorylated_by|activates; residue=Tyr15?; date=20090826 ||| term=target of Wee1; qualifier=phosphorylated_by|inhibits; residue=Tyr15?; date=20090826 ||| term=target is Klp9; qualifier=phosphorylates; db_xref=PMID:19666868; date=20090820 ||| term=target is Ase1; qualifier=phosphorylates; db_xref=PMID:19666868; date=20090820 ||| term=target is Res2; qualifier=phosphorylates; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; residue=Tyr15; qualifier=inhibits; cv=pt_mod; db_xref=PMID:2682257; date=20090213 ||| term=modification, phosphorylated; residue=Tyr15; qualifier=inhibits|during_checkpoint_activation; cv=pt_mod; db_xref=PMID:9042863; date=20090213" ; GO "GO:0000307; cyclin-dependent protein kinase holoenzyme complex
GO:0004693; cyclin-dependent protein kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0007095; mitotic cell cycle G2-M transition DNA damage checkpoint
GO:0070317; negative regulation of G1 to G0 transition
GO:2000045; regulation of G1/S transition of mitotic cell cycle
GO:0008361; regulation of cell size
GO:0007089; traversing start control point of mitotic cell cycle" ; primary_name "cdc2" ; product "cyclin-dependent protein kinase Cdk1/Cdc2" ;
chromosome2 GeneDB mRNA 2503268 2503750 . - . mRNA SPBC365.03c ; systematic_id "SPBC365.03c" ; colour "7" ; gene "rpl2101 ||| rpl21 ||| rpl21-1 ||| SPBC365.03c" ; Alias "rpl2101" ; db_xref "SPD:39/39H03" ; synonym "rpl21 ||| rpl21-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR191W and YPL079W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl2101" ; product "60S ribosomal protein L21 (predicted)" ;
chromosome2 GeneDB mRNA 1763735 1764565 . + . mRNA SPBC11G11.05 ; systematic_id "SPBC11G11.05" ; colour "7" ; gene "rpa34 ||| SPBC11G11.05" ; Alias "rpa34" ; db_xref "SPD:09/09C10" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YJL148W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "rpa34" ; product "DNA-directed RNA polymerase I complex subunit Rpa34 (predicted)" ;
chromosome2 GeneDB mRNA 1446072 1447558 . + . mRNA SPBP22H7.07 ; systematic_id "SPBP22H7.07" ; colour "2" ; gene "prp5 ||| cwf1 ||| SPBP22H7.07" ; Alias "prp5" ; obsolete_name "pi024 ||| SPACTOKYO_453.10" ; db_xref "SPD:50/50F11" ; synonym "cwf1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9475017; date=20100727 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL151C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005681; spliceosome complex
GO:0005515; protein binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; primary_name "prp5" ; product "WD repeat protein Prp5" ;
chromosome2 GeneDB mRNA 1845076 1846230 . + . mRNA SPBC28E12.05 ; systematic_id "SPBC28E12.05" ; colour "7" ; gene "esf2 ||| SPBC28E12.05 ||| SPBC3H7.17c" ; Alias "esf2" ; db_xref "SPD:14/14G11" ; synonym "SPBC3H7.17c" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YNR054C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "esf2" ; product "U3 snoRNP-associated protein Esf2 (predicted)" ;
chromosome2 GeneDB mRNA 3729763 3731389 . + . mRNA SPBC13G1.02 ; db_xref "SPD:21/21G05" ; systematic_id "SPBC13G1.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004475; mannose-1-phosphate guanylyltransferase activity
GO:0009298; GDP-mannose biosynthetic process" ; gene "SPBC13G1.02" ; product "mannose-1-phosphate guanyltransferase (predicted)" ; EC_number "2.7.7.13" ;
chromosome2 GeneDB mRNA 1420941 1423967 . - . mRNA SPBC691.02c ; systematic_id "SPBC691.02c" ; colour "7" ; gene "SPBC691.02c" ; obsolete_name "pi034 ||| SPACTOKYO_453.01" ; db_xref "SPD:49/49D03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL145W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005783; endoplasmic reticulum" ; product "RINT1 family protein (predicted)" ;
chromosome2 GeneDB mRNA 1834888 1835295 . - . mRNA SPBC28E12.01c ; systematic_id "SPBC28E12.01c" ; colour "2" ; gene "apc13 ||| SPBC9B6.12c ||| SPBC28E12.01c" ; Alias "apc13" ; db_xref "SPD:03/03B09" ; synonym "SPBC9B6.12c" ; GO "GO:0005680; anaphase-promoting complex
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0031145; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR260C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "apc13" ; product "anaphase-promoting complex subunit Apc13" ;
chromosome2 GeneDB mRNA 3209902 3210844 . + . mRNA SPBC776.16 ; db_xref "SPD:41/41F02" ; systematic_id "SPBC776.16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC776.16" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4381455 4383768 . - . mRNA SPBC1289.01c ; systematic_id "SPBC1289.01c" ; colour "2" ; gene "SPBC1539.11c ||| SPBC1289.01c ||| chr4 ||| cfh3" ; Alias "chr4" ; db_xref "SPD:46/46B04" ; synonym "cfh3 ||| SPBC1539.11c" ; GO "GO:0000148; 1,3-beta-glucan synthase complex
GO:0046658; anchored to plasma membrane
GO:0000935; barrier septum
GO:0051286; cell tip
GO:0043495; protein anchor
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0034613; cellular protein localization
GO:0032951; regulation of beta-glucan biosynthetic process
GO:0090093; regulation of fungal cell wall beta- glucan glucan synthesis
GO:0090093; regulation of fungal cell wall beta- glucan glucan synthesis
GO:0010962; regulation of glucan biosynthetic process
GO:0071470; cellular response to osmotic stress" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:15449309; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, glucan synthesis defective; qualifier=deletion; cv=phenotype; db_xref=PMID:19237545; date=20090428 ||| term=phenotype, sensitive to glucan synthate inhibitor; qualifier=deletion; cv=phenotype; db_xref=PMID:19237545; date=20090428 ||| term=phenotype, sensitive to osmotic stress; qualifier=deletion; cv=phenotype; db_xref=PMID:19237545; date=20090428 ||| term=name description, Chs Four Homologue; cv=name_description; db_xref=PMID:19237545; date=20060106 ||| term=SEL1 repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL061C and YDL203C and YER096W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, prenylated; cv=pt_mod; db_xref=PMID:19237545; date=20090428" ; primary_name "chr4" ; product "1,3-beta-glucan synthase regulatory factor Chf3/Chr4" ;
chromosome2 GeneDB mRNA 2907373 2908613 . - . mRNA SPBP4H10.17c ; systematic_id "SPBP4H10.17c" ; colour "10" ; gene "SPBP4H10.17c" ; note "was originally thought to be a ribosomal protein (ISS)" ; obsolete_name "mrps2" ; db_xref "SPD:15/15D10" ; GO "GO:0051722; protein C-terminal methylesterase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR075C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human PPME1 ortholog; date=20100727" ; product "carboxyl methyl esterase (predicted)" ;
chromosome2 GeneDB mRNA 684143 685682 . + . mRNA SPBPJ4664.01 ; systematic_id "SPBPJ4664.01" ; colour "2" ; gene "dps1 ||| SPBPJ694.01 ||| SPBPJ4664.01" ; Alias "dps1" ; obsolete_name "dps" ; db_xref "SPD:44/44A07" ; synonym "SPBPJ694.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, growth defect, requires antioxidant for growth; qualifier=deletion; cv=phenotype; evidence=TAS; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to H202; evidence=TAS; qualifier=deletion; cv=phenotype; db_xref=PMID:18808426; date=20081222 ||| term=phenotype, sensitive to copper ions; evidence=TAS; cv=phenotype; db_xref=PMID:18808426; date=20081222" ; GO "GO:0032476; decaprenyl diphosphate synthase complex 1
GO:0005743; mitochondrial inner membrane
GO:0008834; di-trans,poly-cis- decaprenylcistransferase activity
GO:0046982; protein heterodimerization activity
GO:0006744; ubiquinone biosynthesis
GO:0016209; antioxidant activity
GO:0019646; aerobic electron transport chain
GO:0006119; oxidative phosphorylation
GO:0070219; cellular sulfide ion homeostasis
GO:0019418; sulphide oxidation" ; primary_name "dps1" ; product "decaprenyl diphosphate synthase subunit Dps1" ; EC_number "2.5.1.-" ;
chromosome2 GeneDB mRNA 1649990 1650658 . - . mRNA SPBC21B10.11 ; systematic_id "SPBC21B10.11" ; colour "7" ; gene "dpm2 ||| SPBC21B10.11" ; Alias "dpm2" ; db_xref "SPD:01/01B12" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006487; protein amino acid N-linked glycosylation
GO:0006493; protein amino acid O-linked glycosylation
GO:0006506; GPI anchor biosynthesis
GO:0004582; dolichyl-phosphate beta-D- mannosyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dpm2" ; product "dolichol-phosphate mannosyltransferase subunit 2 (predicted)" ;
chromosome2 GeneDB mRNA 2389581 2390959 . + . mRNA SPBC36B7.04 ; db_xref "SPD:32/32F05" ; systematic_id "SPBC36B7.04" ; colour "7" ; GO "GO:0006400; tRNA modification
GO:0017150; tRNA dihydrouridine synthase activity
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML080W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC36B7.04" ; product "tRNA dihydrouridine synthase Dus1 (predicted)" ;
chromosome2 GeneDB mRNA 3916583 3918413 . + . mRNA SPBC1604.08c ; systematic_id "SPBC1604.08c" ; colour "2" ; gene "imp1 ||| SPBC1604.08c" ; Alias "imp1" ; db_xref "SPD:25/25H09" ; GO "GO:0005643; nuclear pore
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0005515; protein binding
GO:0008565; protein transporter activity
GO:0000087; M phase of mitotic cell cycle
GO:0006607; NLS-bearing substrate import into nucleus
GO:0040023; establishment of nucleus localization
GO:0006913; nucleocytoplasmic transport
GO:0007346; regulation of progression through mitotic cell cycle
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15937127; date=19700101 ||| term=armadillo repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "imp1" ; product "importin alpha" ;
chromosome2 GeneDB mRNA 2854491 2861429 . - . mRNA SPBP19A11.04c ; systematic_id "SPBP19A11.04c" ; colour "2" ; gene "mor2 ||| cps12 ||| SPBP19A11.04c" ; Alias "mor2" ; db_xref "SPD:49/49H10" ; synonym "cps12" ; GO "GO:0032153; cell division site
GO:0005737; cytoplasm
GO:0030427; site of polarized growth
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030037; actin filament reorganization during cell cycle
GO:0000078; cell morphogenesis checkpoint
GO:0000920; cell separation during cytokinesis
GO: SF 3077846; regulation of establishment or maintenance of cell polarity resulting in cell shape
GO: SF 3077846; regulation of establishment or maintenance of cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell cycle, G2 delay; annotation_extension=dependent_on:wee1; db_xref=PMID:12234926; cv=phenotype; date=20060106 ||| term=HEAT repeat;evidence=ISS; date=19700101 ||| term=orthologous to S. cerevisiae YIL129C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mor2" ; product "morphogenesis protein Mor2" ;
chromosome2 GeneDB mRNA 2691758 2693404 . - . mRNA SPBC4F6.05c ; db_xref "SPD:18/18C04" ; systematic_id "SPBC4F6.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR080W and YFL048C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; GO "GO:0030134; ER to Golgi transport vesicle
GO:0000139; Golgi membrane
GO:0005529; sugar binding
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; gene "SPBC4F6.05c" ; product "lectin family glycoprotein receptor (predicted)" ;
chromosome2 GeneDB mRNA 561122 564808 . - . mRNA SPBC354.08c ; db_xref "SPD:47/47A04" ; systematic_id "SPBC354.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBC354.08c" ; product "DUF221 family protein" ;
chromosome2 GeneDB mRNA 4027418 4028301 . + . mRNA SPBC215.02 ; systematic_id "SPBC215.02" ; colour "2" ; gene "bob1 ||| SPBC215.02" ; Alias "bob1" ; db_xref "SPD:07/07B07" ; synonym "gim5" ; GO "GO:0007021; tubulin folding
GO:0016272; prefoldin complex
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML094W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "bob1" ; product "prefoldin subunit 5 (predicted)" ;
chromosome2 GeneDB mRNA 1007997 1008710 . + . mRNA SPBC146.04 ; db_xref "SPD:06/06C05" ; systematic_id "SPBC146.04" ; colour "7" ; GO "GO:0030134; ER to Golgi transport vesicle
GO:0005789; endoplasmic reticulum membrane
GO:0016971; flavin-linked sulfhydryl oxidase activity
GO:0016972; thiol oxidase activity
GO:0006467; protein thiol-disulfide exchange" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPR037C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC146.04" ; product "sulfhydryl oxidase (predicted)" ;
chromosome2 GeneDB mRNA 3550020 3550736 . - . mRNA SPBC887.06c ; systematic_id "SPBC887.06c" ; colour "7" ; gene "snx3 ||| grd19 ||| SPBC887.06c" ; Alias "snx3" ; db_xref "SPD:06/06H08" ; synonym "grd19" ; GO "GO:0035091; phosphoinositide binding
GO:0005768; endosome
GO:0034499; late endosome to Golgi transport
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR357C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snx3" ; product "sorting nexin Snx3 (predicted)" ;
chromosome2 GeneDB mRNA 773121 775401 . + . mRNA SPBC577.12 ; systematic_id "SPBC577.12" ; colour "10" ; gene "SPBC577.12 ||| mug71" ; Alias "mug71" ; db_xref "SPD:37/37A06" ; GO "GO:0005737; cytoplasm
GO:0004521; endoribonuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR143W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ATPBD4 ortholog; date=20100727" ; primary_name "mug71" ; product "endoribonuclease (predicted)" ;
chromosome2 GeneDB mRNA 3698193 3699180 . + . mRNA SPBP8B7.31 ; db_xref "SPD:42/42G11" ; systematic_id "SPBP8B7.31" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016791; phosphoric monoester hydrolase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER134C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human MDP1 ortholog; date=20100301 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; gene "SPBP8B7.31" ; product "acid phosphatase (predicted)" ;
chromosome2 GeneDB mRNA 3052500 3053542 . + . mRNA SPBC13E7.07 ; db_xref "SPD:10/10F04" ; systematic_id "SPBC13E7.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC13E7.07" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2295031 2297089 . + . mRNA SPBC16H5.03c ; systematic_id "SPBC16H5.03c" ; colour "7" ; gene "fub2 ||| uba2 ||| SPBC16H5.03c" ; Alias "fub2" ; db_xref "SPD:39/39F05" ; synonym "uba2" ; GO "GO:0016925; protein sumoylation
GO:0019948; SUMO activating enzyme activity
GO:0005634; nucleus
GO:0031510; SUMO activating enzyme complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR390C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "fub2" ; product "SUMO E1-like activator enzyme Fub2 (predicted)" ;
chromosome2 GeneDB mRNA 3901253 3904553 . - . mRNA SPBC1604.15 ; systematic_id "SPBC1604.15" ; colour "7" ; gene "gpi16 ||| SPBC1604.15" ; Alias "gpi16" ; db_xref "SPD:26/26B06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003923; GPI-anchor transamidase activity
GO:0016255; attachment of GPI anchor to protein
GO:0005789; endoplasmic reticulum membrane
GO:0042765; GPI-anchor transamidase complex" ; primary_name "gpi16" ; product "pig-T (predicted)" ; reserved_name "gpi16" ;
chromosome2 GeneDB mRNA 3849991 3851535 . + . mRNA SPBC23E6.05 ; systematic_id "SPBC23E6.05" ; colour "7" ; gene "arx1 ||| SPBC23E6.05" ; Alias "arx1" ; db_xref "SPD:21/21H11" ; GO "GO:0042273; ribosomal large subunit biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR101C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arx1" ; product "ribosomal export complex protein Arx1, peptidase family (predicted)" ;
chromosome2 GeneDB mRNA 60553 61379 . - . mRNA SPBPB21E7.02c ; synonym "SPAPB21E7.02c" ; systematic_id "SPBPB21E7.02c" ; controlled_curation "term=warning, previously annotated as pseudogene; cv=warning; date=20091108 ||| term=warning, gene structure updated; cv=warning; date=20091108 ||| term=warning, gene structure may be incorrect; cv=warning; date=20091108 ||| term=species distribution, orthologs cannot be distinguished; date=20091108 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; product "phosphoglycerate mutase family" ;
chromosome2 GeneDB mRNA 3584891 3587346 . + . mRNA SPBC418.02 ; db_xref "SPD:27/27G10" ; systematic_id "SPBC418.02" ; colour "7" ; GO "GO:0004596; peptide alpha-N-acetyltransferase activity
GO:0006473; protein amino acid acetylation
GO:0005737; cytoplasm
GO:0031415; NatA complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC418.02" ; product "NatA N-acetyltransferase complex subunit (predicted)" ;
chromosome2 GeneDB mRNA 3219965 3222332 . - . mRNA SPBC21.05c ; systematic_id "SPBC21.05c" ; colour "2" ; gene "ral2 ||| SPBC21.05c" ; Alias "ral2" ; db_xref "SPD:33/33E05" ; GO "GO:0005737; cytoplasm
GO:0000747; conjugation with cellular fusion
GO:0032005; signal transduction during conjugation with cellular fusion
GO:0010811; positive regulation of cell substrate adhesion
GO:0010570; regulation of filamentous growth
GO:0032488; Cdc42 protein signal tansduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=kelch repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL197W; date=19700101 ||| term=pathway, Ras1-Scd; cv=pathway; date=20080718 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=BTB/POZ domain; qualifier=inferred from context; date=20090209 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706" ; primary_name "ral2" ; product "Ras1-Scd pathway protein Ral2" ;
chromosome2 GeneDB mRNA 3472319 3474169 . + . mRNA SPBC1718.02 ; systematic_id "SPBC1718.02" ; colour "2" ; gene "hop1 ||| SPBC1718.02" ; db_xref "SPD:26/26C01" ; Alias "hop1" ; GO "GO:0030998; linear element
GO:0003677; DNA binding
GO:0030999; linear element formation
GO:0019787; small conjugating protein ligase activity
GO:0051276; chromosome organization
GO:0032446; protein modification by small protein conjugation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=orthologous to S. cerevisiae YIL072W; db_xref=PMID:15226405; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hop1" ; product "linear element associated protein Hop1" ;
chromosome2 GeneDB mRNA 3817041 3817542 . - . mRNA SPBC21C3.12c ; db_xref "SPD:02/02F12" ; systematic_id "SPBC21C3.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=thioredoxin family; date=20071202 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TXNL5 ortholog; date=20100226" ; colour "10" ; gene "SPBC21C3.12c" ; product "DUF953 family protein" ;
chromosome2 GeneDB mRNA 565193 568382 . - . mRNA SPBC354.09c ; db_xref "SPD:38/38D05" ; systematic_id "SPBC354.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR126C and YPL176C and YOR256C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, active site residues absent; qualifier=predicted; date=20100924" ; colour "7" ; GO "GO:0043328; protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular sorting pathway
GO:0000324; fungal-type vacuole
GO:0071627; integral to fungal-type vacuole membrane" ; gene "SPBC354.09c" ; product "Tre1 family protein, involved in vacuolar protein degradation (predicted)" ;
chromosome2 GeneDB mRNA 4492580 4493322 . - . mRNA SPBPB2B2.14c ; systematic_id "SPBPB2B2.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101" ; colour "12" ; GO "GO:0009897; external side of plasma membrane" ; gene "SPBPB2B2.14c" ; product "S. pombe specific DUF999 protein family 8" ;
chromosome2 GeneDB mRNA 1369128 1372426 . + . mRNA SPBC8D2.06 ; systematic_id "SPBC8D2.06" ; colour "7" ; gene "SPBC8D2.06 ||| irs1" ; Alias "irs1" ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:48/48A03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL076C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005829; cytosol
GO:0005524; ATP binding
GO:0004822; isoleucine-tRNA ligase activity
GO:0006428; isoleucyl-tRNA aminoacylation" ; primary_name "irs1" ; product "cytoplasmic isoleucine-tRNA ligase Irs1 (predicted)" ; EC_number "6.1.1.5" ;
chromosome2 GeneDB mRNA 3901632 3902410 . + . mRNA SPBC1604.16c ; db_xref "SPD:06/06F07" ; systematic_id "SPBC1604.16c" ; colour "10" ; GO "GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1604.16c" ; product "RNA-binding protein, G-patch type (predicted)" ;
chromosome2 GeneDB mRNA 4232683 4233948 . - . mRNA SPBC16G5.11c ; systematic_id "SPBC16G5.11c" ; colour "7" ; note "budding yeast presumed ortholog YIL016W does not have N-terminal ubiquitin domain" ; Alias "bag101" ; db_xref "SPD:06/06D09" ; synonym "bag1-a ||| bag1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL016W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0006457; protein folding" ; primary_name "bag101" ; product "BAG family molecular chaperone regulator Bag101 (predicted)" ;
chromosome2 GeneDB mRNA 2765320 2767706 . - . mRNA SPBC336.14c ; systematic_id "SPBC336.14c" ; colour "2" ; gene "ppk26 ||| SPBC336.14c" ; note "Warning, this has a Pfam protein kinase dominan, but none of its orthologs do. It needs looking into further but it could be a false positive" ; Alias "ppk26" ; db_xref "SPD:38/38D01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YKL025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031251; PAN complex
GO:0005737; cytoplasm
GO:0031124; mRNA 3'-end processing
GO:0004674; protein serine/threonine kinase activity
GO:0006301; postreplication repair" ; primary_name "ppk26" ; product "serine/threonine protein kinase, PAN complex subunit, Ppk26" ;
chromosome2 GeneDB mRNA 747847 749113 . + . mRNA SPBC119.15 ; db_xref "SPD:19/19F09" ; systematic_id "SPBC119.15" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0016887; ATPase activity
GO:0006461; protein complex assembly
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YJR072C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human GPN1 ortholog; date=20100727" ; gene "SPBC119.15" ; product "AAA family ATPase at the interface between RNA polymerase II and chaperone (predicted)" ;
chromosome2 GeneDB mRNA 1738658 1739973 . + . mRNA SPBC2F12.02c ; systematic_id "SPBC2F12.02c" ; colour "7" ; gene "SPBC2F12.02c ||| mrpl7" ; Alias "mrpl7" ; db_xref "SPD:11/11E08" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR237W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl7" ; product "mitochondrial ribosomal protein subunit L7 (predicted)" ;
chromosome2 GeneDB mRNA 3163157 3165902 . + . mRNA SPBC609.03 ; systematic_id "SPBC609.03" ; colour "2" ; gene "SPBC609.03" ; Alias "iqw1" ; db_xref "SPD:38/38F06" ; synonym "iqwd1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human IQWD ortholog; db_xref=PMID:18794354; date=20090909 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18794354; date=20090909 ||| term=name description, after human IQWD1; db_xref=db_xref=PMID:18794354; cv=name_description; date=20090909 ||| term=DDB-box; db_xref=PMID:18794354; date=20090909" ; primary_name "iqw1" ; product "WD repeat protein, Iqw1" ;
chromosome2 GeneDB mRNA 1880223 1884128 . + . mRNA SPBC3H7.03c ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00310; ||| KEGG:MAP00380; ||| SPD:29/29H02" ; systematic_id "SPBC3H7.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, curved; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=disease associated, lactic acidosis; date=20060920 ||| term=orthologous to S. cerevisiae YIL125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0042645; mitochondrial nucleoid
GO:0009353; oxoglutarate dehydrogenase complex (sensu Eukaryota)
GO:0004591; oxoglutarate dehydrogenase (succinyl- transferring) activity
GO:0006103; 2-oxoglutarate metabolism
GO:0006099; tricarboxylic acid cycle" ; gene "SPBC3H7.03c" ; product "2-oxoglutarate dehydrogenase (lipoamide) (e1 component of oxoglutarate dehydrogenase complex) (predicted)" ; EC_number "1.2.4.2" ;
chromosome2 GeneDB mRNA 3815507 3816882 . + . mRNA SPBC21C3.11 ; systematic_id "SPBC21C3.11" ; colour "7" ; gene "ubx4 ||| SPBC21C3.11" ; note "note PSI Blast shows conserved N-terminal region, needs Pfam submission" ; Alias "ubx4" ; db_xref "SPD:20/20E01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR067C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Metazoa; date=20100805 ||| term=species distribution, conserved in Vertebrates; date=20100805 ||| term=species distribution, conserved in Eukaryotes only; date=20100805 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human ASPSCR1 ortholog; date=20100217" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0006511; ubiquitin-dependent protein catabolism" ; primary_name "ubx4" ; product "UBX domain protein Ubx4 (predicted)" ;
chromosome2 GeneDB mRNA 1403233 1404003 . + . mRNA SPBC17A3.02 ; db_xref "SPD:08/08F12" ; systematic_id "SPBC17A3.02" ; controlled_curation "term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL087C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; colour "10" ; GO "GO:0005739; mitochondrion" ; gene "SPBC17A3.02" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 3118883 3120530 . - . mRNA SPBC4C3.09 ; db_xref "SPD:17/17G09" ; systematic_id "SPBC4C3.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YOR320C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005794; Golgi apparatus
GO:0008375; acetylglucosaminyltransferase activity
GO:0006487; protein amino acid N-linked glycosylation" ; gene "SPBC4C3.09" ; product "acetylglucosaminyltransferase (predicted)" ; EC_number "2.4.1.-" ;
chromosome2 GeneDB mRNA 2777829 2778591 . + . mRNA SPBC685.05 ; systematic_id "SPBC685.05" ; colour "7" ; gene "gpi15 ||| SPBC685.05" ; Alias "gpi15" ; db_xref "SPD:42/42G06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL038W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0017176; phosphatidylinositol N- acetylglucosaminyltransferase activity
GO:0006506; GPI anchor biosynthesis
GO:0005789; endoplasmic reticulum membrane" ; primary_name "gpi15" ; product "pig-H (predicted)" ; EC_number "2.4.1.198" ;
chromosome2 GeneDB mRNA 2279742 2282163 . + . mRNA SPBC16H5.10c ; systematic_id "SPBC16H5.10c" ; colour "7" ; gene "prp43 ||| SPBC16H5.10c" ; Alias "prp43" ; db_xref "SPD:46/46F10" ; GO "GO:0005681 ; spliceosome complex
GO:0005524; ATP binding
GO:0004004; ATP-dependent RNA helicase activity
GO:0000390; spliceosome disassembly
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YGL120C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp43" ; product "ATP-dependent RNA helicase Prp43 (predicted)" ;
chromosome2 GeneDB mRNA 2305691 2306339 . - . mRNA SPBC12D12.02c ; systematic_id "SPBC12D12.02c" ; colour "2" ; gene "cdm1 ||| SPBC12D12.02c" ; Alias "cdm1" ; db_xref "SPD:31/31D12" ; GO "GO:0043625; delta DNA polymerase complex
GO:0006271; DNA strand elongation
GO:0000731; DNA synthesis during DNA repair
GO:0003887; DNA-directed DNA polymerase activity
GO:0043596; nuclear replication fork
GO:0008408; 3'-5' exonuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9799358; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cdm1" ; product "DNA polymerase delta subunit Cdm1" ;
chromosome2 GeneDB mRNA 4215960 4217335 . - . mRNA SPBC16G5.02c ; db_xref "KEGG:MAP00030; ||| SPD:43/43F05" ; systematic_id "SPBC16G5.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006014; D-ribose metabolism
GO:0004747; ribokinase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPBC16G5.02c" ; product "ribokinase (predicted)" ; EC_number "2.7.1.15" ;
chromosome2 GeneDB mRNA 1393547 1399598 . - . mRNA SPBC8D2.20c ; systematic_id "SPBC8D2.20c" ; colour "2" ; gene "sec31 ||| SPBC8D2.20c" ; Alias "sec31" ; db_xref "SPD:34/34A10" ; GO "GO:0030127; COPII vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0006998; nuclear membrane organization and biogenesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL195W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human LCX ortholog; date=20100217" ; primary_name "sec31" ; product "COPII-coated vesicle component Sec31 (predicted)" ;
chromosome2 GeneDB mRNA 2382425 2384577 . + . mRNA SPBC19G7.17 ; systematic_id "SPBC19G7.17" ; colour "7" ; gene "SPBC19G7.17 ||| SPBC36B7.01" ; db_xref "SPD:33/33D11" ; synonym "SPBC36B7.01" ; GO "GO:0005784; translocon complex
GO:0008565; protein transporter activity
GO:0006616; SRP-dependent cotranslational protein targeting to membrane, translocation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR283C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081116" ; product "translocon subunit Sec61 homolog (predicted)" ;
chromosome2 GeneDB mRNA 2644886 2646646 . - . mRNA SPBC6B1.08c ; systematic_id "SPBC6B1.08c" ; colour "2" ; gene "ofd1 ||| SPBC6B1.08c" ; Alias "ofd1" ; db_xref "SPD:45/45A01" ; GO "GO:0005634; nucleus
GO:0030529; ribonucleoprotein complex
GO:0008143; poly(A) binding
GO:0000288; mRNA catabolism, deadenylation- dependent decay
GO:0010620; negative regulation of transcription by transcrption factor catabolism
GO:0032436; positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0006415; translational termination
GO:0071456; cellular response to hypoxia" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER049W; date=19700101 ||| term=gene expression, transcriptionally regulated by Sre1; db_xref=PMID:18418381; cv=gene_ex; date=20080430 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ofd1" ; product "2-oxoglutarate and Fe(II) dioxygenase domain containing protein 1" ;
chromosome2 GeneDB mRNA 2619640 2625916 . - . mRNA SPBC1826.01c ; systematic_id "SPBC1826.01c" ; colour "7" ; gene "SPBC1826.01c ||| mot1" ; note "overlaps and extends SPBC25B2.12.c & SPBC6B1.01c" ; Alias "mot1" ; obsolete_name "SPBC25B2.12.c ||| SPBC6B1.01c" ; db_xref "SPD:39/39E09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YPL082C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0016887; ATPase activity
GO:0017025; TATA-binding protein binding
GO:0032568; general transcription from RNA polymerase II promoter" ; primary_name "mot1" ; product "TATA-binding protein associated factor Mot1 (predicted)" ;
chromosome2 GeneDB mRNA 2179370 2180693 . - . mRNA SPBC17G9.06c ; db_xref "SPD:14/14G12" ; systematic_id "SPBC17G9.06c" ; GO "GO:0019290; siderophore biosynthetic process" ; controlled_curation "term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; colour "7" ; gene "SPBC17G9.06c" ; product "siderophore-iron biosynthesis protein (predicted)" ;
chromosome2 GeneDB mRNA 603636 604406 . - . mRNA SPBC839.05c ; systematic_id "SPBC839.05c" ; colour "7" ; gene "rps1701 ||| rps17-1 ||| SPBC839.05c" ; Alias "rps1701" ; obsolete_name "SPBC24E9.05c" ; db_xref "SPD:31/31G10" ; synonym "rps17-1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML024W and YDR447C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0042254; ribosome biogenesis" ; primary_name "rps1701" ; product "40S ribosomal protein S17 (predicted)" ;
chromosome2 GeneDB mRNA 4337012 4341528 . + . mRNA SPBC16C6.06 ; systematic_id "SPBC16C6.06" ; colour "2" ; db_xref "SPD:48/48G06" ; Alias "vps10" ; synonym "pep1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBL017C and YNR065C and YJL222W and YIL173W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0007034; Golgi to vacuole transport
GO:0005794; Golgi apparatus
GO:0006623; protein targeting to vacuole
GO:0005048; signal sequence binding" ; primary_name "vps10" ; product "sorting receptor for vacuolar proteins, Vps10" ;
chromosome2 GeneDB mRNA 4414657 4418658 . + . mRNA SPBC1289.17 ; systematic_id "SPBC1289.17" ; colour "4" ; gene "SPBC1289.17 ||| Tf2-11" ; Alias "Tf2-11" ; obsolete_name "tf2-1 ||| SPBC8E4.11c" ; synonym "SPBC8E4.11c" ; controlled_curation "term=tf2-type transposon; date=19700101" ; GO "GO:0005634; nucleus" ; primary_name "Tf2-11" ; product "retrotransposable element" ;
chromosome2 GeneDB mRNA 4176032 4177957 . - . mRNA SPBC14F5.10c ; db_xref "SPD:23/23E10" ; systematic_id "SPBC14F5.10c" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC14F5.10c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB mRNA 263847 264947 . - . mRNA SPBC800.07c ; systematic_id "SPBC800.07c" ; colour "2" ; gene "tsf1 ||| SPBC800.07c" ; Alias "tsf1" ; db_xref "SPD:12/12C12" ; GO "GO:0005759; mitochondrial matrix
GO:0005525; GTP binding
GO:0005085; guanyl-nucleotide exchange factor activity
GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tsf1" ; product "mitochondrial translation elongation factor EF- Ts Tsf1" ;
chromosome2 GeneDB mRNA 3699573 3700652 . - . mRNA SPBC19F5.01c ; systematic_id "SPBC19F5.01c" ; colour "2" ; gene "puc1 ||| SPBP8B7.32c ||| SPBC19F5.01c" ; Alias "puc1" ; db_xref "SPD:32/32D10" ; synonym "SPBP8B7.32c" ; GO "GO:0007096; regulation of exit from mitosis
GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0016538; cyclin-dependent protein kinase regulator activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "puc1" ; product "cyclin Puc1" ;
chromosome2 GeneDB mRNA 204503 205546 . + . mRNA SPBC660.06 ; db_xref "SPD:10/10F02" ; systematic_id "SPBC660.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=orthologous to S. cerevisiae YFL010C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=genome organization, tandem duplication; cv=genome_org; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC660.06" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 3400603 3403173 . + . mRNA SPBC13A2.02 ; db_xref "SPD:49/49E06" ; systematic_id "SPBC13A2.02" ; colour "7" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL061W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC13A2.02" ; product "nucleoporin Nup82 (predicted)" ;
chromosome2 GeneDB mRNA 3935133 3935481 . + . mRNA SPBC1677.02 ; systematic_id "SPBC1677.02" ; colour "2" ; gene "dpm3 ||| SPBC1677.02" ; Alias "dpm3" ; db_xref "SPD:02/02A02" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006487; protein amino acid N-linked glycosylation
GO:0006493; protein amino acid O-linked glycosylation
GO:0006506; GPI anchor biosynthesis
GO:0004582; dolichyl-phosphate beta-D- mannosyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dpm3" ; product "dolichol-phosphate mannosyltransferase subunit 3" ;
chromosome2 GeneDB mRNA 3353145 3357522 . - . mRNA SPBC11C11.04c ; systematic_id "SPBC11C11.04c" ; colour "2" ; gene "alp1 ||| SPBC11C11.04c" ; Alias "alp1" ; db_xref "SPD:41/41A08" ; GO "GO:0000235; astral microtubule
GO:0048487; beta-tubulin binding
GO:0005515; protein binding
GO:0006457; beta-tubulin folding
GO:0007163; establishment and/or maintenance of cell polarity
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0007023; post-chaperonin tubulin folding pathway" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9450991; date=19700101 ||| term=orthologous to S. cerevisiae YOR349W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "alp1" ; product "tubulin specific chaperone cofactor D, Alp1" ;
chromosome2 GeneDB mRNA 2536221 2538027 . + . mRNA SPBC29A10.02 ; systematic_id "SPBC29A10.02" ; colour "2" ; gene "SPBC365.18 ||| SPBC29A10.02 ||| spo5 ||| mrb1 ||| mug12" ; Alias "spo5" ; db_xref "SPD:45/45H09" ; synonym "mrb1 ||| mug12 ||| SPBC365.18" ; GO "GO:0033620; Mei2 nuclear dot
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0003723; RNA binding
GO:0007135; meiosis II
GO:0007131; meiotic recombination
GO:0006998; nuclear membrane organization and biogenesis
GO:0060903; positive regulation of meiosis I
GO:0060903; positive regulation of meiosis I
GO:0032120; prospore membrane formation
GO:0031322; prospore-specific spindle pole body modification
GO:0030437; sporulation (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16896214; date=20070201 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human RBMS1 and RBMS2 and RBMS3 ortholog; date=20100222" ; primary_name "spo5" ; product "meiotic RNA-binding protein 1" ;
chromosome2 GeneDB mRNA 293326 294756 . - . mRNA SPBC1773.06c ; db_xref "SPD:15/15G08" ; systematic_id "SPBC1773.06c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; GO "GO:0006066; alcohol metabolism
GO:0004022; alcohol dehydrogenase activity" ; gene "SPBC1773.06c" ; product "alcohol dehydrogenase (predicted)" ; EC_number "1.1.1.1" ;
chromosome2 GeneDB mRNA 4199902 4201828 . - . mRNA SPBC342.01c ; systematic_id "SPBC342.01c" ; colour "7" ; gene "alg6 ||| SPBC3F6.06c ||| SPBC342.01c" ; note "initially annotated as hypothetical protein but no Met or homology in adjoining cosmid" ; Alias "alg6" ; db_xref "SPD:26/26A04" ; synonym "SPBC3F6.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006488; dolichol-linked oligosaccharide biosynthesis
GO:0005783; endoplasmic reticulum
GO:0016758; transferase activity, transferring hexosyl groups
GO:0042283; dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity
GO:0006490; oligosaccharide-lipid intermediate assembly" ; primary_name "alg6" ; product "glucosyltransferase Alg6 (predicted)" ;
chromosome2 GeneDB mRNA 1740246 1742296 . - . mRNA SPBC1D7.05 ; systematic_id "SPBC1D7.05" ; colour "2" ; gene "byr2 ||| ste8 ||| SPBC2F12.01 ||| SPBC1D7.05" ; Alias "byr2" ; db_xref "SPD:33/33E12" ; synonym "ste8 ||| SPBC2F12.01" ; GO "GO:0032005; signal transduction during conjugation with cellular fusion
GO:0000751; cell cycle arrest in response to pheromone
GO:0004709; MAP kinase kinase kinase activity
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0005515; protein binding
GO:0005737; cytoplasm
GO:0005886; plasma membrane
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006468; protein amino acid phosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=target of Ste4; db_xref=PMID:8816472; date=19700101 ||| term=orthologous to S. cerevisiae YLR362W; date=19700101 ||| term=complementation, functionally complemented by S. cerevisiae STE11; db_xref=PMID:1435723; cv=complementation; date=19700101 ||| term=target of Ras1; db_xref=PMID:7836423; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sterile; db_xref=PMID:3185514; date=20101013 ||| term=name description, STErile; db_xref=PMID:3185514; date=20101013" ; primary_name "byr2" ; product "MAP kinase kinase kinase Byr2" ;
chromosome2 GeneDB mRNA 3117669 3118826 . + . mRNA SPBC4C3.10c ; systematic_id "SPBC4C3.10c" ; colour "7" ; gene "pre3 ||| SPBC4C3.10c" ; Alias "pre3" ; db_xref "SPD:13/13E12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005634; nucleus
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0051726; regulation of progression through cell cycle
GO:0000278; mitotic cell cycle" ; primary_name "pre3" ; product "20S proteasome component beta 1 Pre3 (predicted)" ; EC_number "3.4.25.1" ;
chromosome2 GeneDB mRNA 2608688 2610626 . - . mRNA SPBC25B2.07c ; systematic_id "SPBC25B2.07c" ; colour "10" ; gene "SPBC25B2.07c ||| mug164" ; Alias "mug164" ; db_xref "SPD:24/24D10" ; GO "GO:0015630; microtubule cytoskeleton
GO:0000226; microtubule cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:15797925; date=20100917 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug164" ; product "microtubule-associated protein Mug164" ;
chromosome2 GeneDB mRNA 3457181 3458856 . + . mRNA SPBC2G2.12 ; systematic_id "SPBC2G2.12" ; colour "7" ; gene "SPBC2G2.12 ||| hrs1" ; Alias "hrs1" ; db_xref "KEGG:MAP00340; ||| KEGG:MAP00970; ||| SPD:25/25H06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004821; histidine-tRNA ligase activity
GO:0006427; histidyl-tRNA aminoacylation" ; primary_name "hrs1" ; product "mitochondrial and cytoplasmic histidine-tRNA ligase Hrs1 (predicted)" ; EC_number "6.1.1.21" ;
chromosome2 GeneDB mRNA 1136696 1137744 . - . mRNA SPBC1709.19c ; systematic_id "SPBC1709.19c" ; colour "7" ; gene "SPBC1709.19c" ; obsolete_name "SPBC409.02c" ; db_xref "SPD:09/09G07" ; controlled_curation "term=orthologous to S. cerevisiae YKL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005759; mitochondrial matrix
GO:0006879; iron ion homeostasis" ; product "NifU-like protein (predicted)" ;
chromosome2 GeneDB mRNA 2293393 2294125 . - . mRNA SPBC16H5.04 ; db_xref "SPD:08/08G11" ; systematic_id "SPBC16H5.04" ; colour "7" ; GO "GO:0016020; membrane
GO:0005739; mitochondrion
GO:2000185; regulation of phosphate transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR106W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPBC16H5.04" ; product "pho88 family protein (predicted)" ;
chromosome2 GeneDB mRNA 3111343 3112229 . - . mRNA SPBC1778.08c ; systematic_id "SPBC1778.08c" ; colour "2" ; gene "arc3 ||| arc21 ||| SPBC1778.08c" ; Alias "arc3" ; db_xref "SPD:09/09B02" ; synonym "arc21" ; GO "GO:0005885; Arp2/3 protein complex
GO:0034314; Arp2/3 complex-mediated actin nucleation
GO:0030479; actin cortical patch
GO:0000147; actin cortical patch assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR370C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arc3" ; product "ARP2/3 actin-organizing complex subunit Arc21" ;
chromosome2 GeneDB mRNA 4372823 4373432 . + . mRNA SPBC1539.06 ; db_xref "SPD:01/01G01" ; systematic_id "SPBC1539.06" ; colour "7" ; GO "GO:0000062; acyl-CoA binding
GO:0006631; fatty acid metabolism
GO:0005634; nucleus
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR037C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1539.06" ; product "acyl-coenzyme A binding protein (predicted)" ;
chromosome2 GeneDB mRNA 555841 557160 . + . mRNA SPBC354.06 ; systematic_id "SPBC354.06" ; colour "7" ; gene "SPBC354.06 ||| mrps16" ; Alias "mrps16" ; db_xref "SPD:43/43A02" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrps16" ; product "mitochondrial ribosomal protein subunit S16 (predicted)" ;
chromosome2 GeneDB mRNA 2417024 2418459 . - . mRNA SPBC1921.06c ; systematic_id "SPBC1921.06c" ; colour "2" ; db_xref "SPD:17/17H09" ; Alias "pvg3" ; synonym "mug49" ; GO "GO:0051072; 4,6-pyruvylated galactose residue biosynthesis
cell wall biosynthesis (sensu Fungi); GO:0009272; GO:0009272
GO:0046919; pyruvyltransferase activity
; Golgi apparatus
GO:0047220; galactosylxylosylprotein 3-beta- galactosyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20100120 ||| term=species distribution, conserved in Vertebrates; date=20100120 ||| term=species distribution, conserved in Metazoa; date=20100120 ||| term=species distribution, conserved in Eukaryotes; date=20100120 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100120" ; primary_name "pvg3" ; product "galactosylxylosylprotein 3-beta- galactosyltransferase Pvg1 (predicted)" ; EC_number "2.4.1.34" ;
chromosome2 GeneDB mRNA 3567679 3570482 . - . mRNA SPBC887.14c ; systematic_id "SPBC887.14c" ; colour "2" ; gene "pfh1 ||| pif1 ||| SPBC887.14c" ; Alias "pfh1" ; db_xref "SPD:33/33H02" ; synonym "pif1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12058079|PMID:18725402; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:12058079; date=20100708 ||| term=gene expression, alternative transcripts, alternative initiation site; db_xref=PMID:18725402; cv=gene_ex; date=20080901 ||| term=complementation, functionally complemented by S. cerevisiae RRM3; cv=complementation; date=20080901 ||| term=localization, DNA damage foci; db_xref=PMID:18725402; date=20080901 ||| term=orthologous to S. cerevisiae YHR031C and YML061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, PiF1 Helicase homolog; date=20100629 ||| term=human PIF1 ortholog; date=20100708" ; GO "GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0043141; ATP-dependent 5' to 3' DNA helicase activity
GO:0006310; DNA recombination
GO:0006281; DNA repair
GO:0033567; DNA replication, Okazaki fragment processing
GO:0043137; DNA replication, removal of RNA primer
GO:0043504; mitochondrial DNA repair
GO:0000723; telomere maintenance
GO:0005730; nucleolus
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; primary_name "pfh1" ; product "5' to 3' DNA helicase, involved in DNA recombination and repair Pif1" ;
chromosome2 GeneDB mRNA 2913506 2914279 . - . mRNA SPBP4H10.21c ; systematic_id "SPBP4H10.21c" ; colour "2" ; gene "sld5 ||| SPBP4H10.21c" ; Alias "sld5" ; db_xref "SPD:42/42F06" ; GO "GO:0006270; DNA replication initiation
GO:0000811; GINS complex
GO:0034613; cellular protein localization
GO:0006271; DNA strand elongation during DNA replication
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16199877; date=19700101 ||| term=orthologous to S. cerevisiae YDR489W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:16199877; date=20101004" ; primary_name "sld5" ; product "GINS complex subunit Sld5" ;
chromosome2 GeneDB mRNA 1169312 1170469 . - . mRNA SPBC409.17c ; db_xref "SPD:07/07F10" ; systematic_id "SPBC409.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC409.17c" ; product "DUF1769 family protein" ;
chromosome2 GeneDB mRNA 3270021 3271782 . + . mRNA SPBC25H2.08c ; systematic_id "SPBC25H2.08c" ; colour "7" ; gene "SPBC25H2.08c ||| mrs2" ; Alias "mrs2" ; db_xref "SPD:20/20C10" ; GO "GO:0015095; magnesium ion transmembraner transporter activity
GO:0045016; mitochondrial magnesium ion transport
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL060W and YOR334W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "mrs2" ; product "magnesium ion transporter Mrs2 (predicted)" ;
chromosome2 GeneDB mRNA 3088243 3088911 . - . mRNA SPBC30D10.06 ; systematic_id "SPBC30D10.06" ; colour "7" ; gene "lsm4 ||| SPBC30D10.06" ; Alias "lsm4" ; db_xref "SPD:04/04C09" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005688; snRNP U6
GO:0003723; RNA binding
GO:0006402; mRNA catabolism
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsm4" ; product "U6 snRNP-associated protein Lsm4 (predicted)" ;
chromosome2 GeneDB mRNA 2988635 2990187 . + . mRNA SPBC2D10.13 ; systematic_id "SPBC2D10.13" ; colour "2" ; gene "est1 ||| SPBC2D10.13" ; Alias "est1" ; db_xref "SPD:24/24E07" ; GO "GO:0000781; chromosome, telomeric region
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005697; telomerase holoenzyme complex
GO:0003723; RNA binding
GO:0005515; protein binding
GO:0043047; single-stranded telomeric DNA binding
GO:0007004; telomere maintenance via telomerase" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR206W and YLR233C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "est1" ; product "telomerase regulator Est1" ;
chromosome2 GeneDB mRNA 1700817 1702082 . - . mRNA SPBC19C2.13c ; systematic_id "SPBC19C2.13c" ; colour "2" ; gene "SPBC19C2.13c ||| ctu2" ; Alias "ctu2" ; db_xref "SPD:17/17C07" ; GO "GO:0005829; cytosol
GO:0002143; wobble position uridine thiolation
GO:0002144; cytosolic tRNA thiouridylase complex
GO:0005515; protein binding
GO:0032447; protein urmylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL119W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ctu2" ; product "cytosolic thiouridylase subunit Ctu2" ;
chromosome2 GeneDB mRNA 1451412 1454655 . - . mRNA SPBC32H8.02c ; systematic_id "SPBC32H8.02c" ; colour "2" ; gene "nep2 ||| SPBC32H8.02c ||| mug120" ; Alias "nep2" ; obsolete_name "SPACTOKYO_453.14c ||| pi021" ; db_xref "SPD:50/50E07" ; synonym "mug120" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YPL020C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=misc, target does not appear to be only cullins; db_xref=PMID:15769255; date=20050321" ; GO "GO:0005737; cytoplasm
GO:0019784; NEDD8-specific protease activity
GO:0000338; protein deneddylation
GO:0016926; protein desumoylation
GO:0016925; protein sumoylation
GO:0006508; proteolysis" ; primary_name "nep2" ; product "NEDD8 protease Nep2" ;
chromosome2 GeneDB mRNA 244611 244951 . - . mRNA SPBC31E1.03 ; systematic_id "SPBC31E1.03" ; colour "2" ; gene "hub1 ||| ubl4 ||| SPBC31E1.03" ; Alias "hub1" ; db_xref "SPD:02/02A09" ; synonym "ubl4" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005515; protein binding
GO:0016567; protein ubiquitination
GO:0034613; cellular protein localization
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15569151; date=19700101 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YNR032C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:15569151; date=20100727" ; primary_name "hub1" ; product "ubiquitin-like protein modifier Hub1" ;
chromosome2 GeneDB mRNA 2468889 2470425 . - . mRNA SPBC12C2.04 ; db_xref "SPD:18/18C03" ; systematic_id "SPBC12C2.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC12C2.04" ; product "NAD binding dehydrogenase family protein" ;
chromosome2 GeneDB mRNA 2210136 2211761 . + . mRNA SPBC14C8.04 ; db_xref "SPD:23/23E09" ; systematic_id "SPBC14C8.04" ; colour "7" ; GO "GO:0030234; enzyme regulator activity
GO:0003984; acetolactate synthase activity
GO:0009097; isoleucine biosynthesis
GO:0009098; leucine biosynthesis
GO:0009099; valine biosynthesis
GO:0005739; mitochondrion
GO:0005948; acetolactate synthase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL009C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBC14C8.04" ; product "acetolactate synthase regulatory unit (predicted)" ;
chromosome2 GeneDB mRNA 3326725 3329473 . + . mRNA SPBC17D1.01 ; systematic_id "SPBC17D1.01" ; colour "7" ; gene "SPBC17D11.09 ||| SPBC17D1.01" ; Alias "SPBC17D11.09" ; db_xref "SPD:37/37A07" ; synonym "SPBC17D11.09" ; GO "GO:0000122; negative regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR464W; date=20080901 ||| term=HMG box; qualifier=inferred from context; date=20080901 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPBC17D11.09" ; product "transcriptional regulatory protein Spp41 (predicted)" ;
chromosome2 GeneDB mRNA 1095282 1098185 . + . mRNA SPBC1709.01 ; systematic_id "SPBC1709.01" ; colour "2" ; gene "chs2 ||| SPBC1709.01 ||| SPBC1734.17" ; Alias "chs2" ; db_xref "SPD:47/47C07" ; synonym "SPBC1734.17" ; GO "; barrier septum
GO:0005887; integral to plasma membrane
GO:0004100; chitin synthase activity
GO:0004100; chitin synthase activity
GO:0005515; protein binding
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0000915; cytokinesis, contractile ring formation
GO:0000915; cytokinesis, contractile ring formation
GO:0034613; cellular protein localization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization dependent on F- actin; db_xref=PMID:16772338; date=20060620 ||| term=localization dependent on exocytosis; db_xref=PMID:16772338; date=20060620 ||| term=localization dependent on assembled CAR; db_xref=PMID:16772338; date=20060620 ||| term=gene expression, expression cell cycle regulated; db_xref=PMID:15277753; cv=gene_ex; date=20060620 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15277753; date=20060620 ||| term=orthologous to S. cerevisiae YBR038W and YNL192W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "chs2" ; product "chitin synthase homolog Chs2" ;
chromosome2 GeneDB mRNA 3635435 3636428 . + . mRNA SPBP8B7.02 ; db_xref "SPD:09/09H01" ; systematic_id "SPBP8B7.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBP8B7.02" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4144684 4145098 . + . mRNA SPBC1861.07 ; db_xref "SPD:03/03C07" ; systematic_id "SPBC1861.07" ; colour "7" ; GO "GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0008023; transcription elongation factor complex
GO:0016567; protein ubiquitination
GO:0003711; transcriptional elongation regulator activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL046C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1861.07" ; product "elongin C (predicted)" ;
chromosome2 GeneDB mRNA 1229153 1230915 . + . mRNA SPBC725.14 ; systematic_id "SPBC725.14" ; colour "7" ; gene "arg6 ||| SPBC725.14" ; note "the name arg6 is tentative and was assigned because this is the only gene involved in arginine biosynthesis between ade7 1076817 on contig pB10D8 and ura5 1150778 on contig pB10D8" ; Alias "arg6" ; db_xref "KEGG:MAP00220; ||| SPD:24/24D03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006592; ornithine biosynthesis
GO:0006526; arginine biosynthesis
GO:0006538; glutamate catabolism
GO:0004042; amino-acid N-acetyltransferase activity
GO:0005759; mitochondrial matrix" ; primary_name "arg6" ; product "acetylglutamate synthase Arg6 (predicted)" ; EC_number "2.3.1.1" ;
chromosome2 GeneDB mRNA 957658 958553 . + . mRNA SPBC646.16 ; db_xref "SPD:08/08H04" ; systematic_id "SPBC646.16" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL011C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; gene "SPBC646.16" ; product "20S proteasome component alpha 1 (predicted)" ; EC_number "3.4.25.1" ;
chromosome2 GeneDB mRNA 2325049 2327098 . + . mRNA SPBC24C6.04 ; db_xref "SPD:34/34F02" ; systematic_id "SPBC24C6.04" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR037W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0003842; 1-pyrroline-5-carboxylate dehydrogenase activity
GO:0006537; glutamate biosynthesis
GO:0006561; proline biosynthesis
GO:0005739; mitochondrion" ; gene "SPBC24C6.04" ; product "delta-1-pyrroline-5-carboxylate dehydrogenase (predicted)" ; EC_number "1.5.1.12" ;
chromosome2 GeneDB mRNA 4469200 4471005 . - . mRNA SPBPB2B2.06c ; db_xref "SPD:49/49C08" ; systematic_id "SPBPB2B2.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR202W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBPB2B2.06c" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome2 GeneDB mRNA 3546172 3548539 . - . mRNA SPBC887.04c ; systematic_id "SPBC887.04c" ; colour "2" ; gene "lub1 ||| SPBC887.04c" ; Alias "lub1" ; db_xref "SPD:28/28B06" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005515; protein binding
GO:0043130; ubiquitin binding
GO:0006281; DNA repair
GO:0033554; cellular response to stress
GO:0016574; histone ubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL213C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lub1" ; product "WD repeat protein Lub1" ;
chromosome2 GeneDB mRNA 970607 972742 . - . mRNA SPBP35G2.05c ; systematic_id "SPBP35G2.05c" ; colour "2" ; gene "cki2 ||| SPBP35G2.05c" ; Alias "cki2" ; db_xref "SPD:33/33A10" ; GO "GO:0005737; cytoplasm
GO:0008360; regulation of cell shape
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0030100; regulation of endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CK2 subfamily; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8163505; date=19700101 ||| term=orthologous to S. cerevisiae YNL154C and YHR135C and YER123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cki2" ; product "serine/threonine protein kinase Cki2" ;
chromosome2 GeneDB mRNA 594395 597036 . + . mRNA SPBC1706.03 ; systematic_id "SPBC1706.03" ; colour "7" ; gene "SPBC1706.03 ||| SPBC839.01 ||| fzo1" ; Alias "fzo1" ; db_xref "SPD:28/28B10" ; synonym "SPBC839.01" ; GO "GO:0003924; GTPase activity
GO:0008053; mitochondrial fusion
GO:0007005; mitochondrion organization and biogenesis
GO:0005741; mitochondrial outer membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR179C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fzo1" ; product "mitochondrial dynamin family fusion GTPase protein (predicted)" ;
chromosome2 GeneDB mRNA 3709250 3711230 . + . mRNA SPBC19F5.04 ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00300; ||| SPD:37/37A08" ; systematic_id "SPBC19F5.04" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER052C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009088; threonine biosynthesis
GO:0006555; methionine metabolism
GO:0004072; aspartate kinase activity" ; gene "SPBC19F5.04" ; product "aspartate kinase (predicted)" ; EC_number "2.7.2.4" ;
chromosome2 GeneDB mRNA 3609588 3611624 . - . mRNA SPBC16D10.07c ; systematic_id "SPBC16D10.07c" ; colour "2" ; gene "sir2 ||| SPBC16D10.07c" ; Alias "sir2" ; db_xref "SPD:26/26D07" ; GO "GO:0016585; chromatin remodeling complex
GO:0000775; chromosome, pericentric region
GO:0000781; chromosome, telomeric region
GO:0031934; mating-type region heterochromatin
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0070403; NAD binding
GO:0046969; NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970; NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0032129; histone deacetylase activity (H3-K9 specific)
GO:0030528; transcription regulator activity
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0000070; mitotic sister chromatid segregation
GO:0016575; histone deacetylation
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0070198; protein localization to chromosome, telomeric region
GO:0051570; regulation of histone H3-K9 methylation
GO:0060303; regulation of nucleosome density
GO:0006357; regulation of transcription from polymerase II promoter
GO:0001302; replicative cell aging" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15545655; date=19700101 ||| term=orthologous to S. cerevisiae YDL042C and YOL068C; date=19700101 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16079916; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:15545655; date=20091211 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sir2" ; product "Sir2 family histone deacetylase Sir2" ;
chromosome2 GeneDB mRNA 2335262 2337787 . - . mRNA SPBC24C6.09c ; db_xref "SPD:46/46H07" ; systematic_id "SPBC24C6.09c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; colour "10" ; gene "SPBC24C6.09c" ; product "phosphoketolase family protein (predicted)" ;
chromosome2 GeneDB mRNA 1212823 1215921 . - . mRNA SPBC725.06c ; systematic_id "SPBC725.06c" ; colour "2" ; gene "ppk31 ||| SPBC725.06c ||| mug25" ; Alias "ppk31" ; db_xref "SPD:30/30A06" ; synonym "mug25" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YFL033C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk31" ; product "serine/threonine protein kinase Ppk31 (predicted)" ;
chromosome2 GeneDB mRNA 1990613 1992475 . - . mRNA SPBC1A4.08c ; systematic_id "SPBC1A4.08c" ; colour "2" ; gene "cct3 ||| SPBC1A4.08c" ; Alias "cct3" ; db_xref "SPD:35/35D01" ; GO "GO:0005832; chaperonin-containing T-complex
GO:0007021; tubulin folding
GO:0006457; protein folding
GO:0007010; cytoskeleton organization and biogenesis
GO:0051082; unfolded protein binding
GO:0005737; cytoplasm
GO:0005856; cytoskeleton" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cct3" ; product "chaperonin-containing T-complex gamma subunit Cct3" ;
chromosome2 GeneDB mRNA 2118267 2119454 . - . mRNA SPBC23G7.10c ; db_xref "SPD:18/18H10" ; systematic_id "SPBC23G7.10c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; gene "SPBC23G7.10c" ; product "NADH-dependent flavin oxidoreductase (predicted)" ;
chromosome2 GeneDB mRNA 2240916 2242349 . + . mRNA SPBC15C4.03 ; systematic_id "SPBC15C4.03" ; colour "7" ; gene "SPBC15C4.03" ; db_xref "SPD:44/44F06" ; synonym "rep1" ; GO "GO:0007264; small GTPase mediated signal transduction
GO:0005092; GDP-dissociation inhibitor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR370C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, mental retardation; date=20091018 ||| term=human GDI1 and GDI2 ortholog; date=20091018 ||| term=name description, Rab Escort Protein; db_xref=PMID:19486165; date=20091127 ||| term=warning, gene name conflict; cv=warning; date=20091127" ; product "Rab geranylgeranyltransferase escort protein (predicted)" ;
chromosome2 GeneDB mRNA 2601820 2604577 . + . mRNA SPBC25B2.03 ; db_xref "SPD:26/26H09" ; systematic_id "SPBC25B2.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); qualifier=inferred from context; date=20070129 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR140W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC25B2.03" ; product "zf-C3HC4 type zinc finger" ;
chromosome2 GeneDB mRNA 2634380 2636644 . - . mRNA SPBC6B1.05c ; systematic_id "SPBC6B1.05c" ; colour "2" ; gene "SPBC6B1.05c" ; Alias "atg7" ; db_xref "SPD:38/38A01" ; GO "GO:0019787; small conjugating protein ligase activity
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy
GO:0032258; CVT pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR171W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atg7" ; product "ubiquitin-like conjugating enzyme Atg7" ;
chromosome2 GeneDB mRNA 3437553 3440897 . + . mRNA SPBC2G2.02 ; systematic_id "SPBC2G2.02" ; colour "2" ; gene "SPBC2G2.02 ||| syj1" ; Alias "syj1" ; db_xref "SPD:30/30B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL106C and YOL065C and YIL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0046856; phosphoinositide dephosphorylation
GO:0006897; endocytosis
GO:0004439; phosphoinositide 5-phosphatase activity
GO:0048017; inositol lipid-mediated signaling
GO:0046488; phosphatidylinositol metabolism
GO:0004445; inositol-polyphosphate 5-phosphatase activity" ; primary_name "syj1" ; product "inositol-polyphosphate 5-phosphatase (synaptojanin homolog 1)" ; EC_number "3.1.3.36" ;
chromosome2 GeneDB mRNA 2150885 2151927 . - . mRNA SPBC1711.09c ; db_xref "SPD:11/11H07" ; systematic_id "SPBC1711.09c" ; colour "7" ; GO "GO:0030173; integral to Golgi membrane
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR088C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1711.09c" ; product "SNARE associated Golgi protein (predicted)" ;
chromosome2 GeneDB mRNA 2723119 2725683 . - . mRNA SPBC4F6.17c ; db_xref "SPD:28/28F09" ; systematic_id "SPBC4F6.17c" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0051082; unfolded protein binding
GO:0034605; cellular response to heat
GO:0000002; mitochondrial genome maintenance
GO:0010892; positive regulation of mitochondrial translation in response to stress
GO:0030150; protein import into mitochondrial matrix
GO:0043335; protein unfolding
GO:0042026; protein refolding
GO:0050821; protein stabilization" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDR258C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC4F6.17c" ; product "mitochondrial heatshock protein Hsp78 (predicted)" ;
chromosome2 GeneDB mRNA 81025 83118 . + . mRNA SPBPB10D8.01 ; db_xref "SPD:50/50H12" ; systematic_id "SPBPB10D8.01" ; colour "7" ; GO "GO:0033229; cysteine transmembrane transporter activity
GO:0042883; cysteine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLL055W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBPB10D8.01" ; product "cysteine transporter (predicted)" ;
chromosome2 GeneDB mRNA 4085349 4086495 . - . mRNA SPBC1347.13c ; db_xref "SPD:17/17A07" ; systematic_id "SPBC1347.13c" ; colour "7" ; GO "GO:0008989; rRNA (guanine-N1-)-methyltransferase activity
GO:0000154; rRNA modification
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR201C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1347.13c" ; product "ribose methyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 1733420 1733983 . - . mRNA SPBC2F12.04 ; systematic_id "SPBC2F12.04" ; colour "2" ; gene "rpl1701 ||| rpl17 ||| rpl17-1 ||| SPBC2F12.04" ; Alias "rpl1701" ; obsolete_name "SPCC2F12.04" ; db_xref "SPD:31/31E10" ; synonym "rpl17 ||| rpl17-1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL180W and YJL177W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; primary_name "rpl1701" ; product "60S ribosomal protein L17" ;
chromosome2 GeneDB mRNA 1375313 1375725 . - . mRNA SPBC8D2.09c ; systematic_id "SPBC8D2.09c" ; colour "7" ; gene "SPBC8D2.09c" ; Alias "msl1" ; db_xref "SPD:31/31D05" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005686; snRNP U2
GO:0030620; U2 snRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR009W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "msl1" ; product "U2 snRNP-associated protein Msl1 (predicted)" ; reserved_name "msl1" ;
chromosome2 GeneDB mRNA 4008779 4009384 . - . mRNA SPBC3B9.13c ; systematic_id "SPBC3B9.13c" ; colour "2" ; gene "rpp102 ||| rpp1-2 ||| SPBC3B9.13c" ; Alias "rpp102" ; db_xref "SPD:31/31F01" ; synonym "rpp1-2" ; GO "GO:0006414; translational elongation
GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL081C and YDL130W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpp102" ; product "60S acidic ribosomal protein Rpp1-2" ;
chromosome2 GeneDB mRNA 451562 453045 . - . mRNA SPBC428.06c ; systematic_id "SPBC428.06c" ; colour "2" ; gene "rxt2 ||| SPBC428.06c" ; db_xref "SPD:16/16A09" ; Alias "rxt2" ; GO "GO:0000747; conjugation with cellular fusion
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0016575; histone deacetylation
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR095C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rxt2" ; product "histone deacetylase complex subunit Rxt2" ;
chromosome2 GeneDB mRNA 1296915 1297260 . + . mRNA SPBC3D6.16 ; db_xref "SPD:52/52E06" ; systematic_id "SPBC3D6.16" ; colour "6" ; gene "SPBC3D6.16" ; product "dubious" ; note "no evidence from affey/Solexa" ;
chromosome2 GeneDB mRNA 1960030 1962397 . - . mRNA SPBC1E8.03c ; db_xref "SPD:23/23B07" ; systematic_id "SPBC1E8.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC1E8.03c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 2077074 2078935 . - . mRNA SPBC18E5.02c ; systematic_id "SPBC18E5.02c" ; colour "7" ; gene "SPBC29A3.20c ||| SPBC18E5.02c" ; Alias "SPBC29A3.20c" ; db_xref "SPD:35/35D03" ; synonym "SPBC29A3.20c" ; GO "GO:0004758; serine C-palmitoyltransferase activity
GO:0030148; sphingolipid biosynthesis
GO:0017059; serine C-palmitoyltransferase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR296C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC29A3.20c" ; product "serine palmitoyltransferase complex subunit (predicted)" ; EC_number "2.3.1.50" ;
chromosome2 GeneDB mRNA 2444304 2446232 . + . mRNA SPBC12C2.13c ; systematic_id "SPBC12C2.13c" ; colour "2" ; gene "fnx1 ||| SPBC21D10.04c ||| SPBC12C2.13c" ; Alias "fnx1" ; db_xref "SPD:33/33C04" ; synonym "SPBC21D10.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR293W and YMR088C; db_xref=PMID:18503766; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0031166; integral to vacuolar membrane
GO:0000329; vacuolar membrane
GO:0015182; L-asparagine transmembrane transporter activity
GO:0015188; L-isoleucine transmembrane transporter activity
GO:0015189; L-lysine transmembrane transporter activity
GO:0032975; amino acid import into vacuole
GO:0033554; cellular response to stress
GO:0070314; G1 to G0 transition" ; primary_name "fnx1" ; product "vacuolar membrane amino acid uptake transporter Fnx1" ;
chromosome2 GeneDB mRNA 2583072 2584282 . - . mRNA SPBC2G5.04c ; db_xref "SPD:14/14G02" ; systematic_id "SPBC2G5.04c" ; colour "7" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030176; integral to endoplasmic reticulum membrane
GO:0030134; ER to Golgi transport vesicle
GO:0030173; integral to Golgi membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML067C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC2G5.04c" ; product "COPII-coated vesicle component Erv41 (predicted)" ;
chromosome2 GeneDB mRNA 245530 246960 . + . mRNA SPBC31E1.04 ; systematic_id "SPBC31E1.04" ; colour "2" ; gene "pep12 ||| SPBC31E1.04" ; Alias "pep12" ; db_xref "SPD:17/17H12" ; GO "GO:0006896; Golgi to vacuole transport
GO:0016192; vesicle-mediated transport
GO:0005484; SNAP receptor activity
GO:0006886; intracellular protein transport
GO:0005794; Golgi apparatus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YOR036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pep12" ; product "SNARE Pep12" ;
chromosome2 GeneDB mRNA 1132170 1134114 . + . mRNA SPBC1709.17 ; db_xref "SPD:26/26C12" ; systematic_id "SPBC1709.17" ; colour "7" ; GO "GO:0004326; tetrahydrofolylpolyglutamate synthase activity
GO:0006730; one-carbon compound metabolism
GO:0009396; folic acid and derivative biosynthesis
GO:0005739; mitochondrion
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR241W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1709.17" ; product "folylpolyglutamate synthase (predicted)" ;
chromosome2 GeneDB mRNA 2435636 2438482 . + . mRNA SPBC21D10.06c ; systematic_id "SPBC21D10.06c" ; colour "2" ; gene "map4 ||| SPBC21D10.06c" ; note "Map4 in GeneDB contains an array of 5 repeats. In PMID:16857197 9 repeats are reported and this number is the correct number of repeats and will be updated via an insertion into the contig sequence shortly" ; Alias "map4" ; db_xref "SPD:47/47C09" ; GO "GO:0009986; cell surface
GO:0005618; cell wall
GO:0010339; external side of cell wall
GO:0070263; external side of fungal-type cell wall
GO:0043332; mating projection tip
GO:0050839; cell adhesion molecule binding
GO:0000752; agglutination during conjugation with cellular fusion
GO:0007155; cell adhesion
GO:0000755; cytogamy
GO:0000749; response to pheromone during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, cell morphology, shmoos with long tips; qualifier=deletion; cv=phenotype; db_xref=PMID:16857197; date=20060804 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060804 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20060804 ||| term=misc, required in h+ but not in h-cells; db_xref=PMID:16857197; date=20060804 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=DIPSY domain; date=20081212 ||| term=modification, glycosylated; evidence=ISS; qualifier=O-linked; db_xref=PMID:17870620; date=20081222 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; date=20090202 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, conserved in Fungi only; date=20091216 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091216" ; primary_name "map4" ; product "cell surface agglutination protein Map4" ;
chromosome2 GeneDB mRNA 3727012 3728176 . - . mRNA SPBC13G1.14c ; systematic_id "SPBC13G1.14c" ; colour "7" ; gene "SPBC13G1.14c" ; note "uncertain translation start point" ; obsolete_name "SPBC25D12.07c" ; db_xref "SPD:43/43D09" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0003723; RNA binding
GO:0000184; mRNA catabolism, nonsense-mediated decay" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human Rnps1 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "RNA-binding protein (predicted)" ;
chromosome2 GeneDB mRNA 275671 277100 . + . mRNA SPBC800.11 ; db_xref "SPD:18/18E07" ; systematic_id "SPBC800.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; gene "SPBC800.11" ; product "inosine-uridine preferring nucleoside hydrolase (predicted)" ;
chromosome2 GeneDB mRNA 1457557 1458849 . + . mRNA SPBC32H8.03 ; systematic_id "SPBC32H8.03" ; colour "2" ; gene "bem46 ||| SPBC32H8.03" ; Alias "bem46" ; obsolete_name "SPACTOKYO_453.15c" ; db_xref "SPD:41/41G05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL320W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "bem46" ; product "esterase/lipase (predicted)" ;
chromosome2 GeneDB mRNA 1702182 1702688 . + . mRNA SPBC19C2.14 ; systematic_id "SPBC19C2.14" ; colour "2" ; gene "smd3 ||| SPBC19C2.14" ; Alias "smd3" ; db_xref "SPD:03/03H04" ; GO "GO:0003729; mRNA binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000243; commitment complex
GO:0005685; snRNP U1
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:1884590; date=19700101 ||| term=orthologous to S. cerevisiae YLR147C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "smd3" ; product "Sm snRNP core protein Smd3" ;
chromosome2 GeneDB mRNA 1461719 1463083 . + . mRNA SPBC32H8.06 ; systematic_id "SPBC32H8.06" ; colour "10" ; gene "SPBC32H8.06 ||| mug93" ; Alias "mug93" ; obsolete_name "pi018 ||| SPACTOKYO_453.18" ; db_xref "SPD:50/50F04" ; GO "GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=TPR repeat protein; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908" ; primary_name "mug93" ; product "TPR repeat protein, meiotically spliced" ;
chromosome2 GeneDB mRNA 740257 741876 . + . mRNA SPBC119.12 ; db_xref "SPD:19/19C05" ; systematic_id "SPBC119.12" ; colour "7" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005794; Golgi apparatus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR216C; date=19700101 ||| term=GRIP domain; date=20070716 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC119.12" ; product "Golgi matrix protein (predicted)" ;
chromosome2 GeneDB mRNA 2884360 2884913 . + . mRNA SPBP4H10.08 ; systematic_id "SPBP4H10.08" ; colour "7" ; gene "qcr10 ||| SPBP4H10.08" ; Alias "qcr10" ; db_xref "SPD:03/03E04" ; GO "GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750; respiratory chain complex III (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR001W-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "qcr10" ; product "Reiske ISP-associated protein, ubiquinol- cytochrome-c reductase complex subunit Qcr10 (predicted)" ;
chromosome2 GeneDB mRNA 1069049 1069982 . - . mRNA SPBC1734.05c ; systematic_id "SPBC1734.05c" ; colour "7" ; gene "spf31 ||| SPBC1734.05c" ; Alias "spf31" ; db_xref "SPD:10/10G08" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human DNAJC8 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spf31" ; product "DNAJ protein Spf31 (predicted)" ;
chromosome2 GeneDB mRNA 76318 77400 . + . mRNA SPBPB21E7.09 ; systematic_id "SPBPB21E7.09" ; colour "7" ; gene "SPBPB21E7.09" ; db_xref "SPD:52/52A11" ; synonym "SPAPB21E7.09" ; GO "GO:0006530; asparagine catabolic process
GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR155C and YLR157C and YLR158C and YLR160C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; product "L-asparaginase (predicted)" ; EC_number "3.5.1.1" ;
chromosome2 GeneDB mRNA 1728810 1733261 . + . mRNA SPBC2F12.05c ; db_xref "SPD:30/30G09" ; systematic_id "SPBC2F12.05c" ; colour "7" ; GO "GO:0008142; oxysterol binding
GO:0005545; phosphatidylinositol binding
GO:0005783; endoplasmic reticulum
GO:0015918; sterol transport
GO:0006897; endocytosis
GO:0006887; exocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YAR042W and YDL019C and YHR073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPBC2F12.05c" ; product "sterol binding ankyrin repeat protein (predicted)" ;
chromosome2 GeneDB mRNA 4426235 4428619 . - . mRNA SPBC1289.16c ; systematic_id "SPBC1289.16c" ; colour "10" ; gene "SPBC1289.16c ||| SPBC8E4.06" ; note "no amine oxidase activity detected when expressed in S. cerevisiae PMID:16946276" ; Alias "cao2" ; db_xref "SPD:46/46H02" ; synonym "SPBC8E4.06 ||| spao2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005507; copper ion binding
GO:0008131; amine oxidase activity
GO:0048038; quinone binding" ; primary_name "cao2" ; product "copper amine oxidase-like protein Cao2" ;
chromosome2 GeneDB mRNA 2632848 2634380 . + . mRNA SPBC6B1.04 ; systematic_id "SPBC6B1.04" ; colour "2" ; gene "mde4 ||| SPBC6B1.04" ; Alias "mde4" ; db_xref "SPD:20/20C06" ; GO "GO:0000775; chromosome, pericentric region
GO:0033551; monopolin complex
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0051456; attachment of spindle microtubules to kinetochore during meiosis II
GO:0051315; attachment of spindle microtubules to kinetochore during mitosis
GO:0045144; meiotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Mei4 DEpendent protein; cv=name_description; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDR439W; db_xref=PMID:17627824; date=20070718 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mde4" ; product "monopolin-like complex subunit Mde4" ;
chromosome2 GeneDB mRNA 2604654 2605900 . - . mRNA SPBC25B2.04c ; systematic_id "SPBC25B2.04c" ; colour "7" ; gene "SPBC25B2.04c" ; Alias "mtg1" ; db_xref "SPD:16/16F10" ; GO "GO:0005743; mitochondrial inner membrane
GO:0003924; GTPase activity
GO:0032543; mitochondrial translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mtg1" ; product "mitochondrial GTPase involved in translation Mtg1 (predicted)" ;
chromosome2 GeneDB mRNA 2408230 2410094 . - . mRNA SPBC1921.03c ; systematic_id "SPBC1921.03c" ; colour "2" ; gene "mex67 ||| SPBC1921.03c" ; Alias "mex67" ; db_xref "SPD:33/33D08" ; GO "GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0042272; nuclear RNA export factor complex
GO:0000055; ribosomal large subunit export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human NXF1 ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11073978; date=19700101 ||| term=orthologous to S. cerevisiae YPL169C; date=19700101 ||| term=protein sequence feature, NES; cv=sequence_feature; db_xref=PMID:14963046; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mex67" ; product "mRNA export receptor, Tap, nucleoporin Mex67" ;
chromosome2 GeneDB mRNA 796302 798994 . + . mRNA SPBC530.05 ; db_xref "SPD:38/38B01" ; systematic_id "SPBC530.05" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC530.05" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB mRNA 3756657 3757268 . + . mRNA SPBC31F10.03 ; db_xref "SPD:06/06H03" ; systematic_id "SPBC31F10.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER163C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CHAC1 and CHAC2 ortholog; date=20100727" ; colour "10" ; gene "SPBC31F10.03" ; product "ChaC-like protein, predicted cation transport regulator" ;
chromosome2 GeneDB mRNA 2226005 2229032 . - . mRNA SPBC14C8.14c ; systematic_id "SPBC14C8.14c" ; colour "2" ; gene "pol5 ||| SPBC14C8.14c" ; Alias "pol5" ; db_xref "SPD:47/47E11" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005515; protein binding
GO:0000182; rDNA binding
GO:0009303; rRNA transcription
GO:0042790; transcription of nuclear rRNA large RNA polymerase I transcript" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, constitutive; cv=gene_ex; db_xref=PMID:16816948; date=20070212 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16816948; date=20070212 ||| term=orthologous to S. cerevisiae YEL055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pol5" ; product "DNA polymerase phi" ;
chromosome2 GeneDB mRNA 1681782 1684372 . + . mRNA SPBC19C2.05 ; systematic_id "SPBC19C2.05" ; colour "2" ; gene "ran1 ||| pat1 ||| SPBC19C2.05" ; note "YDR247C is more divergent" ; Alias "ran1" ; db_xref "SPD:40/40E07" ; synonym "pat1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL026C and YDR247W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:3870979; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is Mei2; db_xref=PMID:9062192; date=20100825 ||| term=target is Ste11; db_xref=PMID:8945514; date=20100825" ; GO "GO:0031138; negative regulation of conjugation with cellular fusion
GO:0045835; negative regulation of meiosis
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005524; ATP binding" ; primary_name "ran1" ; product "serine/threonine protein kinase Ran1" ;
chromosome2 GeneDB mRNA 3561739 3565753 . + . mRNA SPBC887.12 ; db_xref "SPD:48/48E11" ; systematic_id "SPBC887.12" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061010 ||| term=disease associated, cholestasis; date=20061010 ||| term=orthologous to S. cerevisiae YAL026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005802; trans-Golgi network
GO:0005524; ATP binding
; phospholipid-translocating ATPase activity
GO:0045332; phospholipid translocation
GO:0006892; post-Golgi vesicle-mediated transport
GO:0000028; ribosome small subunit assembly" ; gene "SPBC887.12" ; product "P-type ATPase (predicted)" ; EC_number "3.6.3.1" ;
chromosome2 GeneDB mRNA 1067069 1068940 . + . mRNA SPBC1734.04 ; systematic_id "SPBC1734.04" ; colour "2" ; db_xref "SPD:22/22E01" ; Alias "anp1" ; synonym "SPBC337.20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL036C and YML115C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005794; Golgi apparatus
GO:0000136; alpha-1,6-mannosyltransferase complex
GO:0006487; protein amino acid N-linked glycosylation
GO:0000137; Golgi cis cisterna
GO:0000138; Golgi trans cisterna" ; primary_name "anp1" ; product "mannosyltransferase complex subunit, Anp family (predicted)" ;
chromosome2 GeneDB mRNA 215123 216698 . + . mRNA SPBC660.11 ; systematic_id "SPBC660.11" ; colour "2" ; gene "tcg1 ||| SPBC660.11 ||| mug187" ; Alias "tcg1" ; db_xref "SPD:20/20H08" ; synonym "mug187" ; GO "GO:0043047; single-stranded telomeric DNA binding
GO:0000723; telomere maintenance
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=complementation, functionally complements S. cerevisiae cdc13-1; db_xref=PMID:12519786; cv=complementation; date=19700101 ||| term=orthologous to S. cerevisiae YLL046C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "tcg1" ; product "single-stranded telomeric binding protein Tgc1" ;
chromosome2 GeneDB mRNA 4218490 4219537 . + . mRNA SPBC16G5.03 ; db_xref "SPD:10/10C07" ; systematic_id "SPBC16G5.03" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC16G5.03" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome2 GeneDB mRNA 3764905 3766394 . - . mRNA SPBC31F10.09c ; systematic_id "SPBC31F10.09c" ; colour "2" ; gene "nut2 ||| med10 ||| SPBC31F10.09c" ; Alias "nut2" ; db_xref "SPD:03/03C11" ; synonym "med10" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0006366; transcription from RNA polymerase II promoter
GO:0016592; Srb-mediator complex
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nut2" ; product "mediator complex subunit Med10" ;
chromosome2 GeneDB mRNA 469388 470150 . - . mRNA SPBC428.13c ; systematic_id "SPBC428.13c" ; colour "2" ; gene "mob1 ||| SPBC428.13c" ; Alias "mob1" ; db_xref "SPD:43/43A08" ; GO "GO:0034973; Sid2-Mob1 complex
GO:0031097; medial ring
; spindle pole body
GO:0005515; protein binding
GO:0019887; protein kinase regulator activity
GO:0045859; regulation of protein kinase activity
GO:0034613; cellular protein localization
GO:0031031; positive regulation of septation initiation signaling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10769201; date=19700101 ||| term=orthologous to S. cerevisiae YIL106W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10769201; date=20100709" ; primary_name "mob1" ; product "Sid2-Mob1 kinase complex regulatory subunit Mob1" ;
chromosome2 GeneDB mRNA 1228273 1229151 . - . mRNA SPBC725.13c ; systematic_id "SPBC725.13c" ; colour "2" ; db_xref "SPD:05/05F08" ; Alias "psf2" ; synonym "dre13 ||| bsh3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16199877; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:15466421; date=20100730 ||| term=orthologous to S. cerevisiae YJL072C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Defect in REreplication; cv=name_description; db_xref=PMID:15466421; date=20091111" ; GO "GO:0000811; GINS complex
GO:0005634; nucleus
GO:0005634; nucleus
GO:0006270; DNA replication initiation
GO:0006261; DNA-dependent DNA replication
GO:0034613; cellular protein localization
GO:0045132; meiotic chromosome segregation
GO:0006271; DNA strand elongation during DNA replication
GO:0031261; DNA replication preinitiation complex
GO:0071165; GINS complex assembly
GO:0034504; protein localization in nucleus
GO:0043596; nuclear replication fork" ; primary_name "psf2" ; product "GINS complex subunit Psf2" ;
chromosome2 GeneDB mRNA 3109892 3111199 . + . mRNA SPBC1778.07 ; db_xref "SPD:19/19G08" ; systematic_id "SPBC1778.07" ; colour "10" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL092W and YMR209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c9orf41 ortholog; date=20100727" ; gene "SPBC1778.07" ; product "methyltransferase N2227 family" ;
chromosome2 GeneDB mRNA 184865 186870 . - . mRNA SPBC1198.07c ; db_xref "SPD:25/25D12" ; systematic_id "SPBC1198.07c" ; colour "7" ; GO "GO:0031362; anchored to external side of plasma membrane
GO:0008496; mannan endo-1,6-alpha-mannosidase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0051692; cellular oligosaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL046C and YMR238W; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1198.07c" ; product "mannan endo-1,6-alpha-mannosidase (predicted)" ;
chromosome2 GeneDB mRNA 2888450 2889979 . + . mRNA SPBP4H10.09 ; systematic_id "SPBP4H10.09" ; colour "2" ; gene "rsv1 ||| SPBP4H10.09" ; Alias "rsv1" ; db_xref "SPD:32/32G06" ; GO "GO:0016566; specific transcriptional repressor activity
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0042149; cellular response to glucose starvation
GO:0045912; negative regulation of carbohydrate metabolic process
; negative regulation of cellular carbohydrate metabolic process by repression of transcription
GO:0010674; negative regulation of transcription from RNA polymerase II promoter, meiotic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YGL035C and YGL209W and YER028C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17927811; date=20080721 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17927811; date=20090110" ; primary_name "rsv1" ; product "transcription factor Rsv1" ;
chromosome2 GeneDB mRNA 1216725 1219086 . + . mRNA SPBC725.07 ; systematic_id "SPBC725.07" ; colour "2" ; gene "pex5 ||| SPBC725.07" ; Alias "pex5" ; db_xref "SPD:36/36D08" ; GO "GO:0005829; cytosol
GO:0005777; peroxisome
GO:0000268; peroxisome targeting sequence binding
GO:0007031; peroxisome organization and biogenesis
GO:0006625; protein targeting to peroxisome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Zellweger syndrome; date=20060920 ||| term=disease associated, peroxisomal defects; date=20080601 ||| term=orthologous to S. cerevisiae YDR244W and YMR018W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "pex5" ; product "peroxisomal targeting signal receptor Pex5" ;
chromosome2 GeneDB mRNA 1187626 1190812 . - . mRNA SPBC4.03c ; db_xref "SPD:38/38H07" ; systematic_id "SPBC4.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR098C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0030127; COPII vesicle coat
GO:0005783; endoplasmic reticulum
GO:0008270; zinc ion binding
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; gene "SPBC4.03c" ; product "COPII-coated vesicle component Sfb3 (predicted)" ;
chromosome2 GeneDB mRNA 4124165 4125654 . - . mRNA SPBC56F2.01 ; systematic_id "SPBC56F2.01" ; colour "2" ; gene "pof12 ||| SPBC56F2.01" ; Alias "pof12" ; db_xref "SPD:44/44E05" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0016567; protein ubiquitination
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pof12" ; product "F-box protein Pof12" ;
chromosome2 GeneDB mRNA 3760615 3761880 . - . mRNA SPBC31F10.06c ; systematic_id "SPBC31F10.06c" ; colour "2" ; gene "sar1 ||| SPBC31F10.06c" ; Alias "sar1" ; db_xref "SPD:40/40B05" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0006998; nuclear membrane organization and biogenesis
GO:0007264; small GTPase mediated signal transduction
GO:0030127; COPII vesicle coat" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL218W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sar1" ; product "ADP-ribosylation factor Sar1" ;
chromosome2 GeneDB mRNA 2045495 2046442 . + . mRNA SPBC29A3.04 ; systematic_id "SPBC29A3.04" ; colour "7" ; gene "rpl8 ||| SPBC29A3.04" ; Alias "rpl8" ; obsolete_name "rpl701 ||| rpl7a" ; db_xref "SPD:32/32A03" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL033C and YLL045C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl8" ; product "60S ribosomal protein L7a/L8 (predicted)" ;
chromosome2 GeneDB mRNA 2471721 2472056 . - . mRNA SPBC12C2.14c ; db_xref "SPD:51/51G10" ; systematic_id "SPBC12C2.14c" ; colour "6" ; gene "SPBC12C2.14c" ; product "dubious" ;
chromosome2 GeneDB mRNA 3752477 3753470 . + . mRNA SPBC13G1.12 ; systematic_id "SPBC13G1.12" ; colour "7" ; gene "did2 ||| SPBC13G1.12" ; Alias "did2" ; db_xref "SPD:10/10C05" ; GO "GO:0000815; ESCRT III complex
GO:0005770; late endosome
GO:0006623; protein targeting to vacuole
GO:0043162; ubiquitin-dependent protein catabolism via the multivesicular body pathway
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR035W-A; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "did2" ; product "vacuolar sorting protein Did2 (predicted)" ;
chromosome2 GeneDB mRNA 814506 819511 . - . mRNA SPBC530.11c ; db_xref "SPD:38/38G09" ; systematic_id "SPBC530.11c" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC1327.01C and SPAPB1A11.04C; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC530.11c" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB mRNA 1335724 1341821 . + . mRNA SPBC27B12.08 ; systematic_id "SPBC27B12.08" ; colour "2" ; gene "sip1 ||| SPBC27B12.08" ; Alias "sip1" ; db_xref "SPD:34/34B08" ; GO "GO:0030139; endocytic vesicle
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006897; endocytosis
GO:0006886; intracellular protein transport
GO:0042147; retrograde transport, endosome to Golgi" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL207C; date=19700101 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, pof Six Interacting Protein; db_xref=PMID:19243310; date=20090421 ||| term=phenotype, septation defects; qualifier=ts; cv=phenotype; db_xref=PMID:19243310; date=20090421 ||| term=phenotype, endocytosis defects; qualifier=ts; cv=phenotype; db_xref=PMID:19243310; date=20090421 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:19243310; date=20090421 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sip1" ; product "Pof6 interacting protein Sip1, predicted AP-1 accessory protein" ;
chromosome2 GeneDB mRNA 3186348 3187470 . + . mRNA SPBC776.07 ; db_xref "SPD:13/13A02" ; systematic_id "SPBC776.07" ; colour "7" ; GO "GO:0005759; mitochondrial matrix
GO:0009060; aerobic respiration" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL070C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC776.07" ; product "mitochondrial Mam33 family protein (predicted)" ;
chromosome2 GeneDB mRNA 423269 425446 . - . mRNA SPBC582.04c ; db_xref "SPD:46/46F04" ; systematic_id "SPBC582.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090414 ||| term=species distribution, conserved in Eukaryotes; date=20090414 ||| term=species distribution, conserved in Fungi only; date=20090414 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090414" ; colour "10" ; gene "SPBC582.04c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 3122650 3123831 . - . mRNA SPBC4C3.07 ; systematic_id "SPBC4C3.07" ; colour "2" ; gene "SPBC4C3.07" ; note "was incorrectly annotated as COP9/signalosome complex, updated 8 Sept 2000, (PMID 15904532)" ; obsolete_name "csn6" ; db_xref "SPD:12/12E10" ; GO "GO:0006413; translational initiation
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0005852; eukaryotic translation initiation factor 3 complex
GO:0003743; translation initiation factor activity
GO:0005737; cytoplasm
GO:0016282; eukaryotic 43S preinitiation complex
GO:0071540; eukaryotic translation initiation factor 3 complex, eIF3e complex
GO:0071541; eukaryotic translation initiation factor 3 complex, eIF3m complex
GO:0004843; ubiquitin-specific protease activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15904532; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "translation initiation factor eIF3f" ;
chromosome2 GeneDB mRNA 860928 862356 . + . mRNA SPBC36.10 ; db_xref "SPD:05/05G01" ; systematic_id "SPBC36.10" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005739; mitochondrion
GO:0005758; mitochondrial intermembrane space
GO:0006626; protein targeting to mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR168C and YDR185C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC36.10" ; product "mitochondrial intermembrane space protein sorting protein (predicted)" ;
chromosome2 GeneDB mRNA 2788385 2788884 . + . mRNA SPBC32F12.16 ; Alias "new17" ; systematic_id "SPBC32F12.16" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "new17" ; gene "SPBC32F12.16" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2788883 2789547 . - . mRNA SPBC32F12.03c ; systematic_id "SPBC32F12.03c" ; colour "2" ; gene "gpx1 ||| SPBC32F12.03c" ; Alias "gpx1" ; db_xref "SPD:31/31D11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=20070522 ||| term=orthologous to S. cerevisiae YKL026C and YBR244W and YIR037W; date=19700101 ||| term=gene expression, transcriptionally regulated by Atf1; db_xref=PMID:10455235; date=19700101 ||| term=gene expression, transcriptionally regulated by Pap1; cv=gene_ex; db_xref=PMID:10455235; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0004602; glutathione peroxidase activity
GO:0034599; cellular response to oxidative stress
GO:0006970; response to osmotic stress
GO:0034605; cellular response to heat
GO:0070301; cellular response to hydrogen peroxide
GO:0019430; removal of superoxide radicals" ; primary_name "gpx1" ; product "glutathione peroxidase Gpx1" ; EC_number "1.11.1.9" ;
chromosome2 GeneDB mRNA 2704680 2707595 . + . mRNA SPBC4F6.09 ; systematic_id "SPBC4F6.09" ; colour "2" ; gene "str1 ||| SPBC4F6.09" ; Alias "str1" ; db_xref "SPD:36/36G10" ; GO "GO:0015343; siderophore-iron transporter activity
GO:0015892; siderophore-iron transport
GO:0006879; iron ion homeostasis
GO:0016020; membrane
GO:0033214; iron assimilation by chelation and transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL040C and YHL047C and YOL158C and YKR106W and YCL073C and YEL065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "str1" ; product "siderophore-iron transporter Str1" ;
chromosome2 GeneDB mRNA 1168687 1169049 . - . mRNA SPBC409.16c ; db_xref "SPD:02/02E02" ; systematic_id "SPBC409.16c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0006310; DNA recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL027W; date=20080905 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, previously annotated as dubious; cv=warning; date=20100304" ; gene "SPBC409.16c" ; product "recombination protein Saw1 (predicted)" ;
chromosome2 GeneDB mRNA 4293290 4295935 . + . mRNA SPBC16A3.03c ; systematic_id "SPBC16A3.03c" ; colour "8" ; gene "lyn1 ||| SPBC16A3.03c" ; db_xref "SPD:27/27C02" ; Alias "lyn1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Late cYtokiNesis; cv=name_description; date=20100126" ; primary_name "lyn1" ; product "sequence orphan" ; reserved_name "lyn1" ;
chromosome2 GeneDB mRNA 3732806 3733762 . - . mRNA SPBC13G1.04c ; db_xref "SPD:10/10F05" ; systematic_id "SPBC13G1.04c" ; GO "GO:0006281; DNA repair
GO:0006307; DNA dealkylation involved in DNA repair
GO:0003906; DNA-(apurinic or apyrimidic site lyase) activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ALKBH1 ortholog; date=20100909" ; colour "7" ; gene "SPBC13G1.04c" ; product "alkB homolog/2-OG-Fe(II) oxygenase family (predicted)" ;
chromosome2 GeneDB mRNA 3033736 3035888 . + . mRNA SPBC15D4.14 ; systematic_id "SPBC15D4.14" ; colour "2" ; gene "taf73 ||| SPBC15D4.14 ||| taf5" ; Alias "taf73" ; db_xref "SPD:46/46C03" ; synonym "taf5l ||| taf5" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016986; transcription initiation factor activity
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0006367; transcription initiation from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11279037; date=19700101 ||| term=orthologous to S. cerevisiae YBR198C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "taf73" ; product "transcription factor TFIID complex subunit Taf5- like" ;
chromosome2 GeneDB mRNA 3245143 3245980 . + . mRNA SPBC19F8.08 ; systematic_id "SPBC19F8.08" ; colour "7" ; gene "rps401 ||| rps4-1 ||| SPBC25H2.17c ||| SPBC19F8.08 ||| rps4" ; Alias "rps401" ; db_xref "SPD:40/40B03" ; synonym "rps4-1 ||| rps4 ||| SPBC25H2.17c" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR145C and YHR203C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps401" ; product "40S ribosomal protein S4 (predicted)" ;
chromosome2 GeneDB mRNA 1087638 1088794 . - . mRNA SPBC1734.14c ; systematic_id "SPBC1734.14c" ; colour "2" ; gene "suc1 ||| SPBC1734.14c" ; Alias "suc1" ; db_xref "SPD:39/39H05" ; GO "GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0007346; regulation of progression through mitotic cell cycle
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0000307; cyclin-dependent protein kinase holoenzyme complex
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:3031478; date=20100705" ; primary_name "suc1" ; product "cyclin-dependent protein kinase regulatory subunit Suc1" ;
chromosome2 GeneDB mRNA 2018989 2021578 . - . mRNA SPBP23A10.11c ; db_xref "SPD:24/24G03" ; systematic_id "SPBP23A10.11c" ; colour "7" ; GO "GO:0009277; fungal type cell wall
GO:0003843; 1,3-beta-glucan synthase activity
GO:0034411; cell wall 1,3-beta-glucan biosynthetic process" ; controlled_curation "term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR162C and YJL171C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; gene "SPBP23A10.11c" ; product "circularly permuted 1,3-beta-glucanase (predicted)" ;
chromosome2 GeneDB mRNA 4314415 4315511 . + . mRNA SPBC543.08 ; db_xref "SPD:31/31H06" ; systematic_id "SPBC543.08" ; colour "7" ; GO "GO:0006644; phospholipid metabolism
GO:0005789; endoplasmic reticulum membrane
GO:0046489; phosphoinositide biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL126W and YDR319C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC543.08" ; product "phosphoinositide biosynthesis protein (predicted)" ;
chromosome2 GeneDB mRNA 2910215 2911695 . - . mRNA SPBP4H10.19c ; db_xref "SPD:22/22B08" ; systematic_id "SPBP4H10.19c" ; colour "7" ; GO "GO:0030433; ER-associated protein catabolic process
GO:0006457; protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBP4H10.19c" ; product "calreticulin/calnexin homolog (predicted)" ;
chromosome2 GeneDB mRNA 2256557 2258296 . - . mRNA SPBC21H7.03c ; db_xref "SPD:21/21E09" ; systematic_id "SPBC21H7.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YAR071W and YHR215W and YDL024C and YBR093C and YBR092C; date=19700101 ||| term=gene expression, repressed by thiamine; cv=gene_ex; db_xref=PMID:16278451; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; GO "GO:0005576; extracellular region
GO:0009277; cell wall (sensu Fungi)
GO:0030287; periplasmic space (sensu Fungi)
GO:0003993; acid phosphatase activity
GO:0009897; external side of plasma membrane" ; gene "SPBC21H7.03c" ; product "acid phosphatase (predicted)" ; EC_number "3.1.3.2" ;
chromosome2 GeneDB mRNA 4443155 4443544 . + . mRNA SPBC8E4.02c ; db_xref "SPD:02/02H07" ; systematic_id "SPBC8E4.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC8E4.02c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2736963 2738059 . + . mRNA SPBC336.02 ; systematic_id "SPBC336.02" ; colour "7" ; gene "SPBC336.02" ; obsolete_name "dim1" ; db_xref "SPD:41/41H06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL266W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene name conflict; cv=warning; date=20100126" ; GO "GO:0000179; rRNA (adenine-N6,N6-)- dimethyltransferase activity
GO:0006364; 35S primary transcript processing
GO:0000154; rRNA modification
GO:0005730; nucleolus" ; product "18S rRNA dimethylase (predicted)" ; EC_number "2.1.1.-" ;
chromosome2 GeneDB mRNA 2756305 2758245 . - . mRNA SPBC336.09c ; systematic_id "SPBC336.09c" ; colour "2" ; gene "rrn7 ||| SPBC336.09c" ; Alias "rrn7" ; db_xref "SPD:35/35B03" ; GO "GO:0000120; RNA polymerase I transcription factor complex
GO:0003701; RNA polymerase I transcription factor activity
GO:0005515; protein binding
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL025W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rrn7" ; product "RNA polymerase I upstream activation factor complex subunit Rrn7" ;
chromosome2 GeneDB mRNA 2964108 2965374 . + . mRNA SPBC2A9.10 ; db_xref "SPD:11/11B04" ; systematic_id "SPBC2A9.10" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0045449; reguation of transcription
GO:0006417; regulation of translation" ; gene "SPBC2A9.10" ; product "Bin3 family, transcriptional and translational regulator (predicted0" ;
chromosome2 GeneDB mRNA 1210895 1212375 . - . mRNA SPBC725.05c ; db_xref "SPD:23/23E07" ; systematic_id "SPBC725.05c" ; colour "7" ; GO "GO:0047429; nucleoside-triphosphate diphosphatase activity
GO:0004551; nucleotide diphosphatase activity
GO:0009141; nucleoside triphosphate metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL016C and YCR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC725.05c" ; product "nucleotide pyrophosphatase (predicted)" ;
chromosome2 GeneDB mRNA 1282415 1284325 . + . mRNA SPBC3D6.07 ; systematic_id "SPBC3D6.07" ; colour "7" ; gene "gpi3 ||| SPBC3D6.07" ; Alias "gpi3" ; db_xref "SPD:25/25D03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, paroxysmal nocturnal haemoglobinuri; date=20060920 ||| term=orthologous to S. cerevisiae YPL175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0005783; endoplasmic reticulum
GO:0008194; UDP-glycosyltransferase activity
GO:0017176; phosphatidylinositol N- acetylglucosaminyltransferase activity
GO:0000506; glycosylphosphatidylinositol-N- acetylglu cosaminyltransferase( GPI-GnT)complex" ; primary_name "gpi3" ; product "pig-A, phosphatidylinositol N- acetylglucosaminyltransferase subunit Gpi3 (predicted)" ; EC_number "2.4.1.198" ;
chromosome2 GeneDB mRNA 1324250 1325733 . - . mRNA SPBC27B12.03c ; systematic_id "SPBC27B12.03c" ; colour "2" ; gene "SPBC27B12.03c" ; Alias "erg32" ; db_xref "SPD:32/32C05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to cycloheamide; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, sensitive to cyclosporine; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to nystatin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=phenotype, resistance to amphotericin; cv=phenotype; db_xref=PMID:18310029; date=20091124 ||| term=orthologous to S. cerevisiae YLR056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000248; C-5 sterol desaturase activity
GO:0006696; ergosterol biosynthesis
GO:0005789; integral to endoplasmic reticulum membrane
GO:0005506; iron ion binding
GO:0006623; protein targeting to vacuole
GO:0006897; endocytosis
GO:0006696; ergosterol biosynthetic process
GO:0071210; establishment of protein localization in membrane raft
GO:0090002; establishment of protein localization in plasma membrane" ; primary_name "erg32" ; product "C-5 sterol desaturase Erg32" ; EC_number "1.14.21.6" ;
chromosome2 GeneDB mRNA 649893 652916 . + . mRNA SPBC947.11c ; systematic_id "SPBC947.11c" ; colour "2" ; gene "elg1 ||| SPBC947.11c" ; Alias "elg1" ; db_xref "SPD:47/47C12" ; GO "GO:0005663; DNA replication factor C complex
GO:0031391; Elg1 RFC-like complex
GO:0000790; nuclear chromatin
GO:0003689; DNA clamp loader activity
GO:0006310; DNA recombination
GO:0006281; DNA repair
GO:0006261; DNA replication
GO:0000723; telomere maintenance
GO:0043596; nuclear relication fork
GO:0007064; mitotic sister chromatid cohesion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR144C; date=19700101 ||| term=AAA family ATPase; qualifier=inferred from context; date=19700101 ||| term=BRCT domain; qualifier=inferred from context; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16040599; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "elg1" ; product "DNA replication factor C complex subunit Elg1" ;
chromosome2 GeneDB mRNA 4474145 4474931 . - . mRNA SPBPB2B2.07c ; systematic_id "SPBPB2B2.07c" ; colour "12" ; gene "SPBPB2B2.07c" ; note "altered coordinates based on Solexa transcript SPNG2000, added exon 4474145..4474403" ; db_xref "SPD:41/41C11" ; GO "GO:0009897; external side of plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101" ; product "S. pombe specific DUF999 protein family 7" ;
chromosome2 GeneDB mRNA 1257585 1259126 . + . mRNA SPBC651.10 ; systematic_id "SPBC651.10" ; colour "2" ; gene "nse5 ||| SPBC651.10" ; Alias "nse5" ; db_xref "SPD:18/18D12" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0048478; replication fork protection
GO:0006974; response to DNA damage stimulus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16478984; date=20060504 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance; db_xref=PMID:16478984; date=20100727 ||| term=orthologous to S. cerevisiae YML023C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "nse5" ; product "Smc5-6 complex non-SMC subunit Nse5" ;
chromosome2 GeneDB mRNA 2671946 2672775 . - . mRNA SPBC3E7.07c ; db_xref "SPD:09/09G11" ; systematic_id "SPBC3E7.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL225W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CXorf26 ortholog; date=20100226" ; colour "10" ; gene "SPBC3E7.07c" ; product "DUF757 family protein" ;
chromosome2 GeneDB mRNA 926818 928743 . + . mRNA SPBC646.03 ; db_xref "SPD:24/24E01" ; systematic_id "SPBC646.03" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0050567; glutamyl-tRNA(Gln) amidotransferase activity
GO:0032543; mitochondrial translation
GO:0006399; tRNA metabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR293C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC646.03" ; product "mitochondrial glutamyl-tRNA amidotransferase alpha subunit (predicted)" ;
chromosome2 GeneDB mRNA 396752 398957 . + . mRNA SPBC106.10 ; systematic_id "SPBC106.10" ; colour "2" ; db_xref "SPD:24/24H10" ; Alias "pka1" ; synonym "tpk ||| git6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL164C and YPL203W and YKL166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505 ||| term=pathway, PKA; cv=pathway; date=20091215 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Rst2; qualifier=phosphorylates; db_xref=PMID:11739717; date=20100820 ||| term=target is Mei3; qualifier=phosphorylates; db_xref=PMID:12664134; date=20100820" ; GO "GO:0005952; cAMP-dependent protein kinase complex
GO:0005524; ATP binding
GO:0004691; cAMP-dependent protein kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0001315; cellular age-dependent response to reactive oxygen species
GO:0001315; cellular age-dependent response to reactive oxygen species
GO:0019933; cAMP-mediated signaling
GO:0006995; cellular response to nitrogen starvation
GO:0001300; chronological cell aging
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0031138; negative regulation of conjugation with cellular fusion
GO:0045014; negative regulation of transcription by glucose
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0006110; regulation of glycolysis" ; primary_name "pka1" ; product "cAMP-dependent protein kinase catalytic subunit Pka1" ; EC_number "2.7.11.1" ;
chromosome2 GeneDB mRNA 1433315 1435952 . - . mRNA SPBP22H7.02c ; systematic_id "SPBP22H7.02c" ; colour "7" ; gene "SPBP22H7.02c" ; obsolete_name "pi029 ||| SPACTOKYO_453.05c" ; db_xref "SPD:49/49E07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YPR112C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0003723; RNA binding" ; product "RNA-binding protein Mrd1 (predicted)" ;
chromosome2 GeneDB mRNA 3681913 3684280 . + . mRNA SPBP8B7.23 ; db_xref "SPD:46/46C07" ; systematic_id "SPBP8B7.23" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20060725 ||| term=ubiquitin-protein ligase E3; date=20060504 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR427W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RNF10 ortholog; date=20100301" ; gene "SPBP8B7.23" ; product "ubiquitin-protein ligase E3 implicated in trancription (predicted)" ;
chromosome2 GeneDB mRNA 3954605 3956034 . - . mRNA SPBC26H8.05c ; systematic_id "SPBC26H8.05c" ; colour "7" ; gene "SPBC26H8.05c" ; note "possible intron between 145 21,14639 would improve homology slightly, but has no good acceptor, and insertions are present at this position" ; db_xref "SPD:22/22B06" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR075W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "serine/threonine protein phosphatase (predicted)" ;
chromosome2 GeneDB mRNA 3172323 3172696 . + . mRNA SPBC776.01 ; systematic_id "SPBC776.01" ; colour "2" ; gene "rpl29 ||| SPBC776.01" ; Alias "rpl29" ; db_xref "SPD:39/39G02" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR032C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl29" ; product "60S ribosomal protein L29" ;
chromosome2 GeneDB mRNA 2255047 2256092 . + . mRNA SPBC21H7.02 ; systematic_id "SPBC21H7.02" ; colour "2" ; gene "taf10 ||| SPBC21H7.02" ; Alias "taf10" ; db_xref "SPD:07/07D10" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YDR167W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "taf10" ; product "SAGA complex/transcription factor TFIID complex subunit Taf10" ;
chromosome2 GeneDB mRNA 2848502 2849432 . + . mRNA SPBP19A11.01 ; systematic_id "SPBP19A11.01" ; colour "7" ; gene "SPBP19A11.01" ; Alias "gcv3" ; db_xref "KEGG:MAP00260; ||| SPD:41/41C12" ; GO "GO:0005960; glycine cleavage complex
GO:0005739; mitochondrion
GO:0004047; aminomethyltransferase activity
GO:0004375; glycine dehydrogenase (decarboxylating) activity
GO:0008483; transaminase activity
GO:0006546; glycine catabolism
GO:0019464; glycine decarboxylation via glycine cleavage system
GO:0009249; protein lipoylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL044C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, lipoylated; qualifier=predicted; cv=pt_mod; date=20100304" ; primary_name "gcv3" ; product "glycine decarboxylase complex subunit H (predicted)" ;
chromosome2 GeneDB mRNA 1268477 1271449 . + . mRNA SPBC3D6.02 ; systematic_id "SPBC3D6.02" ; colour "2" ; gene "but2 ||| SPBC3D6.02" ; Alias "but2" ; db_xref "SPD:18/18E12" ; GO "GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:14623327; date=20100712 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPAC27D7.09c and SPAC27D7.11c (paralogs); date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20070719 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "but2" ; product "But2 family protein But2" ;
chromosome2 GeneDB mRNA 176121 177221 . - . mRNA SPBC1198.03c ; db_xref "SPD:09/09B09" ; systematic_id "SPBC1198.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20091106" ; colour "10" ; gene "SPBC1198.03c" ; product "Golgin subfamily A member" ;
chromosome2 GeneDB mRNA 327538 330067 . - . mRNA SPBP26C9.03c ; systematic_id "SPBP26C9.03c" ; colour "2" ; gene "SPBP26C9.03c ||| fet4" ; Alias "fet4" ; db_xref "SPD:33/33D06" ; GO "GO:0005887; integral to plasma membrane
GO:0005381; iron ion transmembrane transporter activity
GO:0005385; zinc ion transmembrane transporter activity
GO:0006826; iron ion transport
GO:0055069; zinc ion homeostasis
GO:0006829; zinc ion transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR319C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "fet4" ; product "iron/zinc ion transporter (predicted)" ;
chromosome2 GeneDB mRNA 474627 476697 . - . mRNA SPBC428.17c ; systematic_id "SPBC428.17c" ; colour "2" ; gene "SPBC428.17c ||| wpl1" ; Alias "wpl1" ; db_xref "SPD:26/26E06" ; GO "GO:0005634; nucleus
GO:0034183; negative regulation of maintenance of mitotic sister chromatid cohesion
GO:0071923; regulation of cohesin localization to chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR014W; date=19700101 ||| term=; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human WAPAL ortholog; date=20100928" ; primary_name "wpl1" ; product "Wings apart-like homolog Wpl1" ;
chromosome2 GeneDB mRNA 1703012 1703781 . - . mRNA SPBC19C2.15c ; systematic_id "SPBC19C2.15c" ; colour "7" ; gene "SPBC19C2.15c ||| SPBC2F12.16" ; db_xref "SPD:08/08G01" ; synonym "SPBC2F12.16" ; GO "GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human PTPLA and PTBLB ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL097W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome2 GeneDB mRNA 1301695 1304117 . - . mRNA SPBC30B4.02c ; db_xref "SPD:37/37C11" ; systematic_id "SPBC30B4.02c" ; colour "7" ; GO "GO:0000398; nuclear mRNA splicing via spliceosome
GO:0030490; maturation of SSU-rRNA
GO:0030688; pre-ribosome, small subunit precursor" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=orthologous to S. cerevisiae YNL224C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC30B4.02c" ; product "R3H and G-patch domain, implicated in splicing (predicted)" ;
chromosome2 GeneDB mRNA 550296 551223 . + . mRNA SPBC354.04 ; db_xref "SPD:04/04G02" ; systematic_id "SPBC354.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC354.04" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2145592 2147814 . + . mRNA SPBC1711.07 ; db_xref "SPD:44/44F08" ; systematic_id "SPBC1711.07" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR131C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC1711.07" ; product "WD repeat protein Rrb1 (predicted)" ;
chromosome2 GeneDB mRNA 66842 67225 . + . mRNA SPBPB21E7.05 ; db_xref "SPD:51/51H06" ; obsolete_name "SPAPB21E7.05" ; systematic_id "SPBPB21E7.05" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBPB21E7.05" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3216269 3218764 . + . mRNA SPBC21.02 ; db_xref "SPD:34/34E12" ; systematic_id "SPBC21.02" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC21.02" ; product "TLDc domain protein 2" ;
chromosome2 GeneDB mRNA 1486152 1488262 . + . mRNA SPBC11B10.01 ; systematic_id "SPBC11B10.01" ; colour "7" ; obsolete_name "pi010 ||| SPACTOKYO_453.27" ; db_xref "SPD:49/49C05" ; Alias "alg2" ; synonym "SPBC32H8.14" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL065C; date=19700101 ||| term=disease associated, CDG-Ii; db_xref=PMID:12684507; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005783; endoplasmic reticulum
GO:0004378; glycolipid 3-alpha-mannosyltransferase activity
GO:0033164; glycolipid 6-alpha-mannosyltransferase activity
GO:0043413; biopolymer glycosylation
GO:0006490; oligosaccharide-lipid intermediate assembly" ; primary_name "alg2" ; product "mannosyltransferase complex subunit Alg2 (predicted)" ;
chromosome2 GeneDB mRNA 3942173 3943989 . - . mRNA SPBC26H8.02c ; systematic_id "SPBC26H8.02c" ; colour "2" ; gene "sec9 ||| SPBC26H8.02c" ; Alias "sec9" ; db_xref "SPD:20/20B06" ; GO "GO:0005628; prospore membrane
GO:0005484; SNAP receptor activity
GO:0031321; prospore formation
GO:0031321; prospore formation
GO:0030437; sporulation (sensu Fungi)
GO:0006893; Golgi to plasma membrane transport
GO:0006906; vesicle fusion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16272747; date=20060530 ||| term=gene expression, transcriptionally regulated by Mei4; qualifier=during_meiosis; db_xref=PMID:16272747; cv=gene_ex; date=20060530 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGR009c and YMR017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, schizophrenia; date=20101119" ; primary_name "sec9" ; product "SNAP-25 homologue, t-SNARE component Sec9" ;
chromosome2 GeneDB mRNA 1059420 1061570 . - . mRNA SPBC1734.01c ; systematic_id "SPBC1734.01c" ; colour "7" ; gene "SPBC1734.01c ||| SPBC337.17c ||| esf1" ; Alias "esf1" ; db_xref "SPD:37/37C04" ; synonym "SPBC337.17c" ; GO "GO:0005730; nucleolus
GO:0003723; RNA binding
GO:0006364; rRNA processing" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR365C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "esf1" ; product "pre-rRNA processing protein Esf1 (predicted)" ;
chromosome2 GeneDB mRNA 3098295 3100698 . + . mRNA SPBC1778.02 ; systematic_id "SPBC1778.02" ; colour "2" ; gene "rap1 ||| SPBC1778.02" ; Alias "rap1" ; db_xref "SPD:26/26G09" ; GO "GO:0000781; chromosome, telomeric region
GO:0070187; telosome
GO:0005724; nuclear telomeric heterochromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006348; chromatin silencing at telomere
GO:0031848; protection from non-homologous end joining at telomere
GO:0016233; telomere capping
GO:0045141; telomere clustering
GO:0000723; telomere maintenance
GO:0031860; telomeric 3' overhang formation
GO:0006366; transcription from RNA polymerase II promoter
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YNL216W; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; attribution=Yasushi Hiraoka, pers comm; date=2000522" ; primary_name "rap1" ; product "telomere binding protein Rap1" ;
chromosome2 GeneDB mRNA 2079330 2080398 . - . mRNA SPBC18E5.03c ; systematic_id "SPBC18E5.03c" ; colour "2" ; gene "SPBC18E5.03c ||| sim4" ; Alias "sim4" ; db_xref "SPD:12/12F01" ; GO "GO:0000939; inner kinetochore of condensed chromosome
GO:0000070; mitotic sister chromatid segregation
GO:0005634; nucleus
GO:0030702; chromatin silencing at centromere
GO:0034613; cellular protein localization
GO:0005515; protein binding
GO:0031511; Mis6-Sim4 complex
GO:0051382; kinetochore assembly
GO:0000779; condensed chromosome, pericentric region
GO:0034080; DNA replication-independent nucleosome assembly at centromere" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; db_xref=PMID:12719471; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090303 ||| term=species distribution, conserved in Vertebrates; date=20090303 ||| term=species distribution, conserved in Metazoa; date=20090303 ||| term=species distribution, conserved in Eukaryotes; date=20090303 ||| term=species distribution, conserved in Eukaryotes only; date=20090303 ||| term=human CENP-K ortholog; qualifier=predicted; date=20090424 ||| term=name description, Silencng In the Middle of the centromere; date=20100727 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100805" ; primary_name "sim4" ; product "kinetochore protein, CENP-K ortholog, Sim4" ;
chromosome2 GeneDB mRNA 2066294 2067957 . - . mRNA SPBC29A3.15c ; systematic_id "SPBC29A3.15c" ; colour "7" ; gene "SPBC29A3.15c ||| rsm23" ; Alias "rsm23" ; db_xref "SPD:22/22A03" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL129C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rsm23" ; product "mitochondrial ribosomal protein subunit S23 (predicted)" ;
chromosome2 GeneDB mRNA 2480551 2481930 . + . mRNA SPBC12C2.01c ; systematic_id "SPBC12C2.01c" ; colour "8" ; gene "SPBC17F3.03c ||| SPBC12C2.01c" ; Alias "SPBC17F3.03c" ; db_xref "SPD:13/13E09" ; synonym "SPBC17F3.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "SPBC17F3.03c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3253735 3260706 . + . mRNA SPBC25H2.13c ; systematic_id "SPBC25H2.13c" ; colour "2" ; gene "cdc20 ||| pol2 ||| SPBC25H2.13c" ; Alias "cdc20" ; db_xref "SPD:41/41B02" ; synonym "pol2" ; GO "GO:0006270; DNA replication initiation
GO:0005634; nucleus
GO:0043596; nuclear replication fork
GO:0003887; DNA-directed DNA polymerase activity
GO:0008622; epsilon DNA polymerase complex
GO:0000075; cell cycle checkpoint
GO:0000723; telomere maintenance
GO:0031261; DNA replication preinitiation complex
GO:0007090; regulation of S-phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL262W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705" ; primary_name "cdc20" ; product "DNA polymerase epsilon catalytic subunit a Pol2" ; EC_number "2.7.7.7" ;
chromosome2 GeneDB mRNA 2264231 2265116 . - . mRNA SPBC21H7.06c ; db_xref "SPD:08/08G02" ; systematic_id "SPBC21H7.06c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006020; myo-inositol metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC21H7.06c" ; product "inositol metabolism protein Opi10 (predicted)" ;
chromosome2 GeneDB mRNA 4191543 4194183 . - . mRNA SPBC3F6.04c ; db_xref "SPD:29/29C09" ; systematic_id "SPBC3F6.04c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0030529; ribonucleoprotein complex
GO:0030515; snoRNA binding
GO:0030490; maturation of SSU-rRNA
GO:0042274; ribosomal small subunit biogenesis and assembly" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL148C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC3F6.04c" ; product "U3 snoRNP protein Nop14 (predicted)" ;
chromosome2 GeneDB mRNA 1857235 1858996 . - . mRNA SPBC3H7.14 ; systematic_id "SPBC3H7.14" ; colour "10" ; gene "SPBC3H7.14 ||| mug176" ; note "appears to be related to microcephalin, possible ortholog" ; Alias "mug176" ; db_xref "SPD:19/19D09" ; GO "GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908" ; primary_name "mug176" ; product "BRCT domain protein" ;
chromosome2 GeneDB mRNA 3895371 3897514 . + . mRNA SPBC1604.19c ; db_xref "SPD:27/27C01" ; systematic_id "SPBC1604.19c" ; colour "7" ; GO "GO:0006886; intracellular protein transport
GO:0030008; TRAPP complex
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006914; autophagy
GO:0030242; peroxisome degradation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1604.19c" ; product "TRAPP complex subunit Trs85 (predicted)" ;
chromosome2 GeneDB mRNA 1288332 1290203 . - . mRNA SPBC3D6.11c ; systematic_id "SPBC3D6.11c" ; colour "2" ; gene "slx8 ||| SPBC3D6.11c" ; Alias "slx8" ; db_xref "SPD:10/10D01" ; controlled_curation "term=phenotype, inviable; cv=phenotype; db_xref=PMID:17762865; date=20071123 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=human RNF4 family; qualifier=false_negative; date=20070530 ||| term=orthologous to S. cerevisiae YER116C; date=19700101 ||| term=complementation, functionally complemented by human RNF4; db_xref=PMID:17762865; cv=complementation; date=20071123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:17762864; date=20100727" ; GO "GO:0033768; SUMO-targeted ubiquitin ligase complex
GO:0033768; SUMO-targeted ubiquitin ligase complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0000077; DNA damage checkpoint
GO:0006310; DNA recombination
GO:0033234; negative regulation of protein sumoylation
GO:0033234; negative regulation of protein sumoylation
GO:0016567; protein ubiquitination
GO:0016567; protein ubiquitination" ; primary_name "slx8" ; product "SUMO-targeted ubiquitin-protein ligase E3 Slx8 (predicted)" ; reserved_name "slx8" ;
chromosome2 GeneDB mRNA 3275681 3276728 . + . mRNA SPBC25H2.04c ; systematic_id "SPBC25H2.04c" ; colour "7" ; gene "SPBC25H2.04c ||| tim22" ; Alias "tim22" ; db_xref "SPD:05/05C11" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0042721; mitochondrial inner membrane protein insertion complex
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL217C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tim22" ; product "TIM22 inner membrane protein import complex subunit Tim22 (predicted)" ;
chromosome2 GeneDB mRNA 1675660 1676150 . + . mRNA SPBC19C2.03 ; systematic_id "SPBC19C2.03" ; colour "2" ; gene "rpc10 ||| rpb12 ||| SPBC19C2.03" ; Alias "rpc10" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:39/39G03" ; synonym "rpb12" ; GO "GO:0006360; transcription from RNA polymerase I promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0006383; transcription from RNA polymerase III promoter
GO:0003899
GO:0005736; DNA-directed RNA polymerase I complex
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0005666; DNA-directed RNA polymerase III complex
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YHR143W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpc10" ; product "DNA-directed RNA polymerase I, II and III subunit Rpc10" ; EC_number "2.7.7.6" ;
chromosome2 GeneDB mRNA 1807057 1808123 . + . mRNA SPBC18H10.19 ; systematic_id "SPBC18H10.19" ; colour "7" ; note "could have a few N-terminal exons, but can't make alternative gene structure, perhaps has a sequencing error?" ; db_xref "SPD:12/12H03" ; Alias "atg14" ; GO "GO:0032258; CVT pathway
GO:0030433; ER-associated protein catabolic process
GO:0016236; macroautophagy
GO:0000407; pre-autophagosomal structure
GO:0000329; fungal-type vacuole membrane
GO:0005942; phoshatidylinositol 3-kinase complex" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YBR128C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ATG14 ortholog; date=20100122" ; primary_name "atg14" ; product "autophagy specific phophatidylinositol 3-kinase complex subunit Atg14 (predicted)" ;
chromosome2 GeneDB mRNA 3974097 3974994 . - . mRNA SPBC26H8.11c ; db_xref "SPD:05/05C12" ; systematic_id "SPBC26H8.11c" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL095W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC26H8.11c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 1019549 1021638 . + . mRNA SPBC146.10 ; systematic_id "SPBC146.10" ; colour "2" ; gene "mug57 ||| SPBC146.10" ; Alias "mug57" ; db_xref "SPD:04/04D06" ; GO "GO:0009986; cell surface
GO:0005576; extracellular region
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060817 ||| term=orthologous to S. cerevisiae YDR262W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "mug57" ; product "meiotically upregulated gene Mug57" ;
chromosome2 GeneDB mRNA 1766103 1769138 . + . mRNA SPBC11G11.07 ; systematic_id "SPBC11G11.07" ; colour "7" ; gene "SPBC11G11.07 ||| SPBC18H10.01 ||| mtr10" ; Alias "mtr10" ; db_xref "SPD:47/47E01" ; synonym "SPBC18H10.01" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0008565; protein transporter activity
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=orthologous to S. cerevisiae YOR160W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TNP03 ortholog; date=20110113" ; primary_name "mtr10" ; product "karyopherin Mtr10 (predicted)" ;
chromosome2 GeneDB mRNA 410807 412676 . - . mRNA SPBC106.17c ; systematic_id "SPBC106.17c" ; colour "2" ; gene "cys2 ||| SPBC106.17c" ; note "appears to be a gene loss in S. cerevisiae, their is no syntenic ortholog of the Ashbya protein AEL098W in S. cerevisiae" ; Alias "cys2" ; db_xref "SPD:44/44H01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=phenotype, growth auxotrophic for cysteine; db_xref=PMID:17622533; date=20100812 ||| term=abhydrolase family; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=experimental tools, selectable marker, amino acid auxotroph; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0019344; cysteine biosynthetic process
GO:0004414; homoserine O-acetyltransferase activity
GO:0005737; cytoplasm" ; primary_name "cys2" ; product "homoserine O-acetyltransferase (predicted)" ; EC_number "2.3.1.-" ;
chromosome2 GeneDB mRNA 333478 336610 . + . mRNA SPBC1271.15c ; db_xref "SPD:46/46D10" ; systematic_id "SPBC1271.15c" ; colour "7" ; GO "GO:0003743; translation initiation factor activity
GO:0005739; mitochondrion
GO:0006413; translational initiation
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YOL023W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1271.15c" ; product "mitochondrial translation initiation factor IF- 2Mt (predicted)" ;
chromosome2 GeneDB mRNA 1488035 1489693 . - . mRNA SPBC11B10.02c ; systematic_id "SPBC11B10.02c" ; colour "2" ; gene "his3 ||| SPBC11B10.02c" ; Alias "his3" ; obsolete_name "pi009 ||| SPACTOKYO_453.27" ; db_xref "SPD:50/50G02" ; GO "GO:0000105; histidine biosynthesis
GO:0004400; histidinol-phosphate transaminase activity
GO:0010045; response to nickel ion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL116W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "his3" ; product "histidinol-phosphate aminotransferase imidazole acetol phosphate transaminase His3" ; EC_number "2.6.1.9" ;
chromosome2 GeneDB mRNA 2446543 2447655 . + . mRNA SPBC12C2.12c ; systematic_id "SPBC12C2.12c" ; colour "2" ; gene "glo1 ||| SPBC21D10.03c ||| SPBC12C2.12c" ; Alias "glo1" ; db_xref "SPD:12/12E09" ; synonym "SPBC21D10.03c" ; GO "GO:0004462; lactoylglutathione lyase activity
GO:0004462; lactoylglutathione lyase activity
GO:0008270; zinc ion binding
GO:0006749; glutathione metabolism
GO:0019243; methylglyoxal catabolism to D-lactate
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006970; response to osmotic stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=catalytic activity, k(cat)/ K(m)m 4.3x10(7) M(-1) min(-1); db_xref=PMID:15042280; cv=cat_act; date=20060106 ||| term=orthologous to S. cerevisiae YML004C; date=19700101 ||| term=subunit composition, monomeric; cv=subunit_composition; db_xref=PMID:15042280; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "glo1" ; product "glyoxalase I" ; EC_number "4.4.1.5" ;
chromosome2 GeneDB mRNA 884959 886282 . + . mRNA SPBC713.09 ; db_xref "SPD:50/50E04" ; systematic_id "SPBC713.09" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC713.09" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 26155 28576 . - . mRNA SPBC1348.10c ; obsolete_name "SPAC1348.10c" ; systematic_id "SPBC1348.10c" ; colour "7" ; GO "GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region
GO:0004620; phospholipase activity
GO:0046475; glycerophospholipid catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1348.10c" ; product "phospholipase (predicted)" ;
chromosome2 GeneDB mRNA 3147205 3148359 . - . mRNA SPBC405.04c ; systematic_id "SPBC405.04c" ; colour "2" ; gene "ypt7 ||| SPBC405.04c" ; Alias "ypt7" ; db_xref "SPD:31/31H05" ; GO "GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006896; Golgi to vacuole transport
GO:0006886; intracellular protein transport
GO:0045324; late endosome to vacuole transport
GO:0031321; prospore formation
GO:0030100; regulation of endocytosis
GO:0007264; small GTPase mediated signal transduction
GO:0007035; vacuolar acidification
GO:0042144; vacuole fusion, non-autophagic
GO:0051469; vesicle fusion with vacuole
GO:0061191; positive regulation of vacuole fusion, non-autophagic" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, vacoule organization defects, fragmented vacuoles; db_xref=PMID:9443913; date=20100704 ||| term=phenotype, sporulation defects; db_xref=PMID:16357443; date=20101115 ||| term=orthologous to S. cerevisiae YML001W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ypt7" ; product "GTPase Ypt7" ;
chromosome2 GeneDB mRNA 2783991 2785638 . - . mRNA SPBC32F12.01c ; systematic_id "SPBC32F12.01c" ; colour "2" ; gene "SPBC685.10c ||| SPBC32F12.01c" ; Alias "css1" ; db_xref "SPD:20/20D07" ; synonym "SPBC685.10c" ; GO "GO:0004629; phospholipase C activity
GO:0030149; sphingolipid catabolism
GO:0005739; mitochondrion
GO:0005783; endoplasmic reticulum
GO:0046513; ceramide biosynthetic process
GO:0051278; fungal-type cell wall polysaccharide biosynthetic process
GO: SF NEW remove ISS; inositolphosphosphingolipid phopholipase C activity
GO:0005886; plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "css1" ; product "inositol phosphosphingolipid phospholipase C, Css1" ;
chromosome2 GeneDB mRNA 426160 429013 . - . mRNA SPBC582.05c ; systematic_id "SPBC582.05c" ; colour "2" ; gene "brc1 ||| SPBC582.05c" ; db_xref "SPD:47/47C11" ; Alias "brc1" ; GO "GO:0005634; nucleus
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0000018; regulation of DNA recombination
GO:0006301; postreplication repair" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:15972456; date=20100727 ||| term=BRCT domain; date=19700101 ||| term=orthologous to S. cerevisiae YHR154W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "brc1" ; product "BRCT domain protein Brc1" ;
chromosome2 GeneDB mRNA 4196054 4199959 . + . mRNA SPBC3F6.05 ; systematic_id "SPBC3F6.05" ; colour "2" ; gene "rga1 ||| SPBC3F6.05" ; Alias "rga1" ; db_xref "SPD:48/48C12" ; GO "GO:0005737; cytoplasm
GO:0005100; Rho GTPase activator activity
GO:0051666; actin cortical patch localization
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0008360; regulation of cell shape
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0032319; regulation of Rho GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=LIM domain; date=19700101 ||| term=orthologous to S. cerevisiae YDL240W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rga1" ; product "Rho-type GTPase activating protein Rga1" ;
chromosome2 GeneDB mRNA 516442 516790 . + . mRNA SPBC1685.09 ; systematic_id "SPBC1685.09" ; colour "7" ; gene "rps29 ||| SPBC1685.09" ; Alias "rps29" ; db_xref "SPD:31/31C04" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YLR388W and YDL061C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps29" ; product "40S ribosomal protein S29 (predicted)" ;
chromosome2 GeneDB mRNA 1915375 1917400 . - . mRNA SPBC16E9.01c ; systematic_id "SPBC16E9.01c" ; colour "2" ; gene "php4 ||| SPBP16F5.09c ||| SPBC16E9.01c" ; Alias "php4" ; db_xref "SPD:32/32A08" ; synonym "SPBP16F5.09c" ; GO "GO:0016602; CCAAT-binding factor complex
GO:0016564; transcriptional repressor activity
GO:0006109; regulation of carbohydrate metabolic process
GO:0090375; negative regulation of transcription from RNA polymerase II promoter in response to iron ion starvation
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=orthologous to S. cerevisiae YKL109W; db_xref=PMID:16963626; date=20070418 ||| term=gene expression, promoter contains IDP (GATA); db_xref=PMID:16963626; cv=gene_ex; date=20070516 ||| term=gene expression, transcriptionally regulated by Fep1; db_xref=PMID:16963626; cv=gene_ex; date=20070516 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18223116; date=20090110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=DNA binding specificity, complex binds 5'-CCAAT-3'; cv=DNA_binding_specificity; date=20100302 ||| term=gene expression, transcriptionally regulates pcl1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates sdh41; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates isa1; db_xref=PMID:16963626; date=20100302 ||| term=gene expression, transcriptionally regulates fbp1; db_xref=PMID:11238405; date=20100302" ; primary_name "php4" ; product "CCAAT-binding factor complex subunit Php4" ;
chromosome2 GeneDB mRNA 1420542 1421783 . + . mRNA SPBC691.01 ; systematic_id "SPBC691.01" ; colour "7" ; gene "SPBC691.01" ; obsolete_name "pi035" ; db_xref "SPD:50/50E06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-DHHC type; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL326C and YDR459C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0018345; protein amino acid palmitoylation
GO:0019706; protein-cysteine S- palmitoleyltransferase activity
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0042144; vacuole fusion, non-autophagic" ; product "vacuolar membrane palmitoyltransferase (predicted)" ; EC_number "2.3.1.-" ;
chromosome2 GeneDB mRNA 1808336 1810318 . - . mRNA SPBC18H10.20c ; db_xref "SPD:16/16H08" ; systematic_id "SPBC18H10.20c" ; colour "7" ; GO "GO:0031625; ubiquitin protein ligase binding
GO:0070086; ubiquitin-dependent endocytosis
GO:0030136; clathrin-coated vesicle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC18H10.20c" ; product "endocytosis regulator (predicted)" ;
chromosome2 GeneDB mRNA 766381 767478 . - . mRNA SPBC577.08c ; systematic_id "SPBC577.08c" ; colour "2" ; gene "txl1 ||| SPBC577.08c ||| trx3" ; Alias "txl1" ; db_xref "SPD:12/12H07" ; synonym "trx3" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0015035; protein disulfide oxidoreductase activity
GO:0045454; cell redox homeostasis
GO:0042149; cellular response to glucose starvation
GO:0071448; cellular response to alkyl hydroperoxide
GO:0034599; cellular response to oxidative stress
GO:0010498; proteasomal protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "txl1" ; product "thioredoxin-like I protein Txl1" ;
chromosome2 GeneDB mRNA 347590 350251 . + . mRNA SPBC1271.10c ; db_xref "SPD:35/35H12" ; systematic_id "SPBC1271.10c" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0006810; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YNR055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1271.10c" ; product "membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 1393454 1395312 . + . mRNA SPBC8D2.19 ; systematic_id "SPBC8D2.19" ; colour "2" ; gene "mde3 ||| SPBC8D2.19" ; Alias "mde3" ; db_xref "SPD:33/33E07" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0030437; regulation of ascospore formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL106W; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10747048; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mde3" ; product "serine/threonine protein kinase, meiotic Mde3" ;
chromosome2 GeneDB mRNA 4206247 4207715 . + . mRNA SPBC342.03 ; systematic_id "SPBC342.03" ; colour "2" ; gene "SPBC342.03 ||| gas4" ; db_xref "SPD:21/21C05" ; Alias "gas4" ; GO "; prospore membrane
GO:0042124; 1,3-beta-glucanosyltransferase activity
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0034412; ascospore wall beta glucan biosynthetic process
GO:0031321; ascospore-type prospore formation
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOL030W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18410286; date=20080417 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:18410286; date=20080417 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; primary_name "gas4" ; product "sporulation specific 1,3-beta- glucanosyltransferase Gas4" ;
chromosome2 GeneDB mRNA 3551340 3551891 . + . mRNA SPBC887.07 ; systematic_id "SPBC887.07" ; colour "7" ; gene "SPBC887.07 ||| mrpl38" ; Alias "mrpl38" ; db_xref "SPD:04/04E11" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL170W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl38" ; product "mitochondrial ribosomal protein subunit L38 (predicted)" ;
chromosome2 GeneDB mRNA 3590998 3592318 . + . mRNA SPBC16D10.03 ; systematic_id "SPBC16D10.03" ; colour "2" ; gene "pgp2 ||| SPBC16D10.03" ; Alias "pgp2" ; db_xref "SPD:16/16G12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Pombe GlycoProtease; db_xref=PMID:11115118; date=20101215" ; GO "GO:0008270; zinc ion binding
GO:0006508; proteolysis
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0000723; telomere maintenance
GO:0031490; chromatin DNA binding
GO:0004222; metalloendopeptidase activity
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0000408; EKC/KEOPS protein complex
; nuclear chromatin" ; primary_name "pgp2" ; product "metallopeptidase Pgp2" ; EC_number "3.4.24.57" ;
chromosome2 GeneDB mRNA 2555664 2556947 . - . mRNA SPBC29A10.09c ; db_xref "SPD:51/51D05" ; systematic_id "SPBC29A10.09c" ; colour "7" ; GO "GO:0006402; mRNA catabolism
GO:0004540; ribonuclease activity
GO:0003676; nucleic acid binding
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC29A10.09c" ; product "CAF1 family ribonuclease (predicted)" ;
chromosome2 GeneDB mRNA 4386149 4387341 . - . mRNA SPBC1289.03c ; systematic_id "SPBC1289.03c" ; colour "2" ; gene "spi1 ||| SPBC1289.03c" ; Alias "spi1" ; db_xref "SPD:40/40B10" ; GO "GO:0005634; nucleus
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005515; protein binding
GO:0031291; Ran protein signal transduction
GO:0006913; nucleocytoplasmic transport
GO:0007346; regulation of progression through mitotic cell cycle
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR185C and YLR293C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Suppressor of PIm; cv=name_description; date=20091018 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "spi1" ; product "Ran GTPase Spi1" ;
chromosome2 GeneDB mRNA 4334049 4335205 . + . mRNA SPBC16C6.04 ; db_xref "SPD:16/16B02" ; systematic_id "SPBC16C6.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC16C6.04" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3415988 3418573 . + . mRNA SPBC4B4.03 ; systematic_id "SPBC4B4.03" ; colour "2" ; gene "rsc1 ||| SPBC4B4.03" ; Alias "rsc1" ; db_xref "SPD:29/29B09" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016586; RSC complex
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=orthologous to S. cerevisiae YGR056W and YLR357W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, chromosome segregation defects; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=gene expression, transcriptionally regulates genes involved in vesicle mediated transport; db_xref=PMID:18622392; cv=gene_ex; date=20080717 ||| term=phenotype, resistance to Brefeldin A; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110" ; primary_name "rsc1" ; product "RSC complex subunit Rsc1" ;
chromosome2 GeneDB mRNA 2507560 2509203 . - . mRNA SPBC365.07c ; db_xref "SPD:34/34E08" ; systematic_id "SPBC365.07c" ; colour "7" ; GO "GO:0003712; transcription cofactor activity
GO:0006355; regulation of transcription, DNA- dependent
GO:0006356; transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YJR134C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TMF1 ortholog; date=20091118" ; gene "SPBC365.07c" ; product "TATA element modulatory factor homolog (predicted)" ;
chromosome2 GeneDB mRNA 341980 344256 . - . mRNA SPBC1271.12 ; systematic_id "SPBC1271.12" ; colour "7" ; gene "kes1 ||| SPBC1271.12" ; Alias "kes1" ; db_xref "SPD:36/36H03" ; GO "GO:0008142; oxysterol binding
GO:0006696; ergosterol biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR001W and YKR003W and YOR237W and YPL145C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "kes1" ; product "oxysterol binding protein (predicted)" ;
chromosome2 GeneDB mRNA 3140608 3143186 . + . mRNA SPBC405.01 ; systematic_id "SPBC405.01" ; colour "2" ; gene "ade1 ||| min4 ||| SPBC4C3.02c ||| SPBC405.01" ; Alias "ade1" ; db_xref "SPD:33/33G10" ; synonym "min4 ||| SPBC4C3.02c" ; GO "GO:0006189; 'de novo' IMP biosynthesis
GO:0004641; phosphoribosylformylglycinamidine cyclo-ligase
GO:0004637; phosphoribosylamine-glycine ligase activity" ; controlled_curation "term=catalytic activity, bifunctional enzyme; cv=cat_act; date=19700101 ||| term=orthologous to S. cerevisiae YGL234W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ade1" ; product "phosphoribosylamine-glycine ligase" ; EC_number "6.3.3.1 ||| 6.3.4.13" ;
chromosome2 GeneDB mRNA 3529728 3530333 . + . mRNA SPBC1105.12 ; systematic_id "SPBC1105.12" ; colour "2" ; gene "hhf3 ||| h4.3 ||| SPBC1105.12" ; Alias "hhf3" ; db_xref "SPD:39/39G04" ; synonym "h4.3" ; GO "GO:0003677; DNA binding
GO:0006334; nucleosome assembly
GO:0000788; nuclear nucleosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR009C and YNL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K20; cv=pt_mod; date=20100311" ; primary_name "hhf3" ; product "histone H4 h4.3" ;
chromosome2 GeneDB mRNA 1161890 1163209 . - . mRNA SPBC409.12c ; systematic_id "SPBC409.12c" ; colour "2" ; gene "SPBC409.12c ||| stn1" ; Alias "stn1" ; db_xref "SPD:08/08A05" ; GO "GO:0000781; chromosome, telomeric region
GO:0070188; Stn1-Ten1 complex
GO:0005515; protein binding
GO:0043047; single-stranded telomeric DNA binding
GO:0016233; telomere capping" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:17715303; date=20100727 ||| term=phenotype, cell morphology, misshapen cells; db_xref=PMID:17715303; date=20100727 ||| term=OB fold; date=20070706 ||| term=orthologous to S. cerevisiae YDR082W; date=20070706 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "stn1" ; product "telomere cap complex subunit Stn1" ;
chromosome2 GeneDB mRNA 849375 851470 . - . mRNA SPBC36.05c ; systematic_id "SPBC36.05c" ; colour "2" ; gene "clr6 ||| SPBC36.05c" ; db_xref "SPD:40/40G04" ; Alias "clr6" ; GO "GO:0033698; Clr6 histone deacetylase complex I/I'
GO:0032221; Clr6 histone deacetylase complex II'
GO:0032221; Clr6 histone deacetylase complex
GO:0070210; Rpd3L-Expanded
GO:0000790; nuclear chromatin
GO:0032129; histone deacetylase activity (H3-K9 specific)
GO:0004407; histone deacetylase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0030261; chromosome condensation
GO:0000070; mitotic sister chromatid segregation
GO:0016575; histone deacetylation
GO:0006357; regulation of transcription from polymerase II promoter
GO:0006338; chromatin remodeling
GO:0051570; regulation of histone H3-K9 methylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11884604; date=19700101 ||| term=phenotype, growth defect, normal growth with ammonia nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=phenotype, growth defect, slow growth with proline nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=orthologous to S. cerevisiae YNL330C; date=19700101 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:16079916; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=gene expression, transcriptionally activates per1; db_xref=PMID:20404084; date=20100504 ||| term=name description, Cryptic Loci Regulator; db_xref=PMID:9755190; date=20100318" ; primary_name "clr6" ; product "histone deacetylase (class I) Clr6" ;
chromosome2 GeneDB mRNA 4375736 4377001 . + . mRNA SPBC1539.08 ; systematic_id "SPBC1539.08" ; colour "2" ; gene "SPBC1539.08 ||| arf6" ; Alias "arf6" ; db_xref "SPD:13/13E01" ; GO "GO:0000139; Golgi membrane
GO:0030428; cell septum
GO:0051286; cell tip
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0006886; intracellular protein transport
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR094W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18060866; date=20080123 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arf6" ; product "ADP-ribosylation factor, Arf family Arf6" ;
chromosome2 GeneDB mRNA 2617862 2619476 . + . mRNA SPBC25B2.11 ; systematic_id "SPBC25B2.11" ; colour "2" ; gene "pof2 ||| SPBC25B2.11" ; Alias "pof2" ; db_xref "SPD:44/44G08" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YJR090C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "pof2" ; product "F-box protein Pof2" ;
chromosome2 GeneDB mRNA 973049 976632 . - . mRNA SPBP35G2.06c ; systematic_id "SPBP35G2.06c" ; colour "2" ; gene "nup131 ||| SPBP35G2.06c" ; Alias "nup131" ; db_xref "SPD:48/48D11" ; synonym "Nup133a" ; GO "GO:0005643; nuclear pore
GO:0031080; Nup107-160 complex
GO:0005515; protein binding
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15226438; date=19700101 ||| term=orthologous to S. cerevisiae YKR082W; date=19700101 ||| term=WD repeat protein; date=20080229 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nup131" ; product "nucleoporin Nup131" ;
chromosome2 GeneDB mRNA 4453078 4453803 . + . mRNA SPBP4G3.03 ; db_xref "SPD:08/08F06" ; systematic_id "SPBP4G3.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPAC15E1.10; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBP4G3.03" ; product "PI31 proteasome regulator related" ;
chromosome2 GeneDB mRNA 644283 644943 . + . mRNA SPBC947.14c ; db_xref "SPD:02/02G06" ; systematic_id "SPBC947.14c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC947.14c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3831185 3834493 . - . mRNA SPBC21C3.20c ; systematic_id "SPBC21C3.20c" ; colour "2" ; gene "git1 ||| SPBC21C3.20c" ; Alias "git1" ; db_xref "SPD:30/30C11" ; GO "GO:0019933; cAMP-mediated signaling
GO:0000747; conjugation with cellular fusion
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPAC11E3.02c; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505 ||| term=name description, Glucose Insensitive Transcription; date=20101029" ; primary_name "git1" ; product "C2 domain protein Git1" ;
chromosome2 GeneDB mRNA 2979661 2980446 . - . mRNA SPBC2D10.08c ; db_xref "SPD:09/09G12" ; systematic_id "SPBC2D10.08c" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML025C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC2D10.08c" ; product "mitochondrial ribosomal protein subunit Yml6 (predicted)" ;
chromosome2 GeneDB mRNA 679977 682673 . - . mRNA SPBC947.01 ; db_xref "SPD:27/27G03" ; systematic_id "SPBC947.01" ; colour "7" ; GO "GO:0016887; ATPase activity
GO:0005524; ATP binding
GO:0006888; ER to Golgi vesicle mediated transport
GO:0051013; microtubule severing
GO:0001578; microtubule bundle formation
GO:0033205; cell cycle cytokinesis
GO:0008568; microtubule-severing ATPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YER047C and YPL074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SPAST and FIGNL1 ortholog; date=20100621 ||| term=disease associated, neurological disorders; date=20100621 ||| term=disease associated, hereditary spastic paraplegia; date=20100621" ; gene "SPBC947.01" ; product "ATP-dependent microtubule severing protein (predicted)" ;
chromosome2 GeneDB mRNA 1824562 1825552 . + . mRNA SPBC9B6.07 ; systematic_id "SPBC9B6.07" ; colour "7" ; gene "SPBC9B6.07 ||| nop52" ; Alias "nop52" ; db_xref "SPD:13/13B03" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nop52" ; product "nucleolar protein Nop52 family (predicted)" ;
chromosome2 GeneDB mRNA 2912138 2913450 . + . mRNA SPBP4H10.20 ; systematic_id "SPBP4H10.20" ; colour "2" ; gene "nhm1 ||| DcpS ||| SPBP4H10.20" ; Alias "nhm1" ; db_xref "SPD:43/43H04" ; synonym "DcpS" ; GO "GO:0005634; nucleus
GO:0003723; RNA binding
GO:0000290; deadenylation-dependent decapping
GO:0050072; m7G(5')pppN diphosphatase activity
GO:0000932; cytoplasmic mRNA processing body" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HIT family; db_xref=PMID:12198172; date=19700101 ||| term=human DCPS ortholog; db_xref=PMID:12366830; date=19700101 ||| term=orthologous to S. cerevisiae YLR270W and YOR173W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nhm1" ; product "m7G(5')pppN diphosphatase (predicted)" ;
chromosome2 GeneDB mRNA 3357779 3358953 . + . mRNA SPBC11C11.05 ; db_xref "SPD:11/11C08" ; systematic_id "SPBC11C11.05" ; colour "7" ; GO "GO:0006078; 1,6-beta-glucan biosynthesis
GO:0009277; cell wall (sensu Fungi)
GO:0005576; extracellular region
GO:0009272; fungal-type cell wall biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL049C and YJL174W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; gene "SPBC11C11.05" ; product "KRE9 family cell wall biosynthesis protein (predicted)" ;
chromosome2 GeneDB mRNA 886500 887548 . + . mRNA SPBC713.10 ; systematic_id "SPBC713.10" ; colour "7" ; gene "SPBC713.10 ||| tim16" ; Alias "tim16" ; db_xref "SPD:41/41B12" ; GO "GO:0030150; protein import into mitochondrial matrix
GO:0001405; presequence translocase-associated import motor
GO:0005759; mitochondrial matrix
GO:0015450; protein translocase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL104W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tim16" ; product "TIM23 translocase complex subunit Tim16 (predicted)" ;
chromosome2 GeneDB mRNA 1655937 1656928 . + . mRNA SPBC21B10.08c ; db_xref "SPD:10/10G06" ; systematic_id "SPBC21B10.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC21B10.08c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2540743 2545008 . + . mRNA SPBC29A10.04 ; systematic_id "SPBC29A10.04" ; colour "2" ; gene "psm1 ||| smc1 ||| SPBC29A10.04" ; Alias "psm1" ; db_xref "SPD:48/48E08" ; synonym "smc1" ; GO "GO:0030892; mitotic cohesin complex
GO:0007064; mitotic sister chromatid cohesion
GO:0005634 ; nucleus
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11069892; date=19700101 ||| term=phenotype, cut; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=phenotype, spindle elongation defects; db_xref=PMID:11069892; cv=phenotype; date=20100721 ||| term=protein sequence feature, coiled-coil; date=19700101 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YFL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Cornelia de Lange syndrome; date=20090213" ; primary_name "psm1" ; product "mitotic cohesin complex subunit Psm1" ;
chromosome2 GeneDB mRNA 3801978 3804400 . + . mRNA SPBC21C3.03 ; db_xref "SPD:46/46E06" ; systematic_id "SPBC21C3.03" ; colour "10" ; GO "GO:0031966; mitochondrial membrane
GO:0005739; mitochondrion
GO:0016301; kinase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL109C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ADCK ortholog; date=20100727" ; gene "SPBC21C3.03" ; product "ABC1 kinase family protein" ;
chromosome2 GeneDB mRNA 1870281 1871749 . + . mRNA SPBC3H7.07c ; systematic_id "SPBC3H7.07c" ; colour "7" ; gene "SPBC3H7.07c" ; Alias "ser2" ; db_xref "KEGG:MAP000260; ||| SPD:13/13G08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR208W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006564; L-serine biosynthesis
GO:0004647; phosphoserine phosphatase activity" ; primary_name "ser2" ; product "phosphoserine phosphatase Ser2 (predicted)" ; EC_number "3.1.3.3" ;
chromosome2 GeneDB mRNA 3250199 3251263 . - . mRNA SPBC25H2.14 ; systematic_id "SPBC25H2.14" ; colour "10" ; gene "SPBC25H2.14 ||| mug16" ; Alias "mug16" ; db_xref "SPD:16/16A04" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR030W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human UNC50 ortholog; date=20100727" ; primary_name "mug16" ; product "UNC-50 family protein" ;
chromosome2 GeneDB mRNA 3063942 3065370 . - . mRNA SPBC30D10.16 ; systematic_id "SPBC30D10.16" ; colour "2" ; gene "SPBC30D10.16 ||| pha2" ; note "splicing possibly incorrectly predicted" ; Alias "pha2" ; db_xref "SPD:14/14H12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for phenylalanine; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=orthologous to S. cerevisiae YNL316C; date=19700101 ||| term=experimental tools, selectable marker, amino acid auxotroph; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0005737; cytoplasm
GO:0004664; prephenate dehydratase activity
GO:0009094; L-phenylalanine biosynthetic process" ; primary_name "pha2" ; product "phrenate dehydratase" ; EC_number "4.2.1.51" ;
chromosome2 GeneDB mRNA 168671 170119 . + . mRNA SPBC1683.12 ; db_xref "SPD:23/23D01" ; systematic_id "SPBC1683.12" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0035353; nicotinamide mononucleotide transmembrane transport
GO:0015663; nicotinamide mononucleotide transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR260W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC1683.12" ; product "nicotinic acid plasma membrane transporter (predicted)" ;
chromosome2 GeneDB mRNA 4061351 4064158 . - . mRNA SPBC1347.01c ; systematic_id "SPBC1347.01c" ; colour "7" ; gene "SPBC215.16c ||| SPBC1347.01c ||| rev1" ; Alias "rev1" ; db_xref "SPD:29/29E01" ; synonym "SPBC215.16c" ; GO "GO:0006281; DNA repair
GO:0017125; deoxycytidyl transferase activity
GO:0005634; nucleus
GO:0003887; DNA-directed DNA polymerase activity
GO:0005739; mitochondrion
GO:0043504; mitochondrial DNA repair" ; controlled_curation "term=orthologous to S. cerevisiae YOR346W; date=19700101 ||| term=BRCT domain; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rev1" ; product "deoxycytidyl transferase Rev1 (predicted)" ;
chromosome2 GeneDB mRNA 1839411 1843042 . + . mRNA SPBC28E12.03 ; systematic_id "SPBC28E12.03" ; colour "2" ; gene "rga4 ||| SPBC28E12.03" ; Alias "rga4" ; db_xref "SPD:30/30B03" ; GO "GO:0032153; cell division site
GO:0005737; cytoplasm
GO:0005100; Rho GTPase activator activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0032231; regulation of actin filament bundle formation
GO:0070650; actin filament bubdle distribution
; regulation of actin cortical patch localization
GO:0034613; cellular protein localization
GO:0032956; regulation of actin cytoskeleton organization
GO:0032319; regulation of Rho GTPase activity
GO:0060305; regulation of cell diameter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:11737264; date=20100917 ||| term=LIM domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR127W and YDR379W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17377067; date=20080430 ||| term=target is Cdc42; db_xref=PMID:18328707; date=20080430 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18328707; date=20090213" ; primary_name "rga4" ; product "Rho-type GTPase activating protein Rga4" ;
chromosome2 GeneDB mRNA 1268093 1268452 . + . mRNA SPBC31A8.02 ; systematic_id "SPBC31A8.02" ; synonym "SPBC3D6.01" ; pseudo "_no_value" ; colour "13" ; controlled_curation "term=warning, no initiator methionine; date=20100127" ; product "pseudogene" ;
chromosome2 GeneDB mRNA 2729256 2730690 . + . mRNA SPBC18A7.01 ; systematic_id "SPBC18A7.01" ; colour "7" ; gene "SPBC4F6.19c ||| SPBC18A7.01" ; Alias "SPBC4F6.19c" ; db_xref "SPD:21/21A09" ; synonym "SPBC4F6.19c" ; GO "GO:0016805; dipeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=19700101 ||| term=species distribution, conserved in Vertebrates; date=19700101 ||| term=species distribution, conserved in Metazoa; date=19700101" ; primary_name "SPBC4F6.19c" ; product "X-Pro dipeptidase (predicted)" ; EC_number "3.4.13.-" ;
chromosome2 GeneDB mRNA 2877766 2881498 . - . mRNA SPBP4H10.06c ; systematic_id "SPBP4H10.06c" ; colour "2" ; gene "cut14 ||| SPBP4H10.06c" ; Alias "cut14" ; db_xref "SPD:34/34A08" ; synonym "smc2" ; GO "GO:0000796; condensin complex
GO:0005737; cytoplasm
GO:0000939; inner kinetochore of condensed chromosome
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0034500; rDNA separation
GO:0016887; ATPase activity
GO:0007076; mitotic chromosome condensation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SMC family; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YFR031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=species distribution, conserved in Eukaryotes only; date=20100902" ; primary_name "cut14" ; product "condensin complex subunit Cut14" ;
chromosome2 GeneDB mRNA 2202687 2204221 . - . mRNA SPBC14C8.01c ; systematic_id "SPBC14C8.01c" ; colour "2" ; gene "cut2 ||| SPBC1815.02c ||| SPBC14C8.01c" ; Alias "cut2" ; db_xref "SPD:40/40B04" ; synonym "SPBC1815.02c" ; GO "GO:0005634; nucleus
GO:0005819; spindle
GO:0030414; protease inhibitor activity
GO:0000077; DNA damage checkpoint
GO:0034613; cellular protein localization
GO:0006302; double-strand break repair
GO:0051306; mitotic sister chromatid segregation
GO:0033048; negative regulation of mitotic sister chromatid separation
GO:0007094; mitotic spindle checkpoint" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YDR113C; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:15126332; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15195092; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=target of APC complex; date=20091221" ; primary_name "cut2" ; product "securin, sister chromatid separation inhibitor" ;
chromosome2 GeneDB mRNA 2233598 2235750 . - . mRNA SPBC14C8.17c ; systematic_id "SPBC14C8.17c" ; colour "2" ; gene "SPBC14C8.17c ||| spt8 ||| sep9" ; Alias "spt8" ; db_xref "SPD:26/26A05" ; synonym "sep9" ; GO "GO:0005634; nucleus
GO:0017025; TATA-binding protein binding
GO:0003712; transcription cofactor activity
GO:0006338; chromatin remodeling
GO:0048096; chromatin-mediated maintenance of transcription
GO:0016573; histone acetylation
GO:0010590; regulation of cell separation during cytokinesis
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, branched; allele=sep9-307; db_xref=PMID:10392445; date=20100809 ||| term=phenotype, septation defects; allele=sep9-307; db_xref=PMID:10392445; date=20100809 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR055C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "spt8" ; product "SAGA complex subunit Spt8" ;
chromosome2 GeneDB mRNA 3899988 3901542 . + . mRNA SPBC1604.17c ; systematic_id "SPBC1604.17c" ; colour "2" ; gene "SPBC1604.17c ||| tti2" ; db_xref "SPD:37/37A03" ; Alias "tti2" ; GO "GO:0005515; protein binding
GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR136C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; date=20020429 ||| term=gene name description, Tel Two Interacting protein; db_xref=PMID:18076573; date=20110114" ; primary_name "tti2" ; product "Tel2 interacting protein Tti2, predicted ASTRA complex subunit" ;
chromosome2 GeneDB mRNA 1048564 1049800 . - . mRNA SPBC337.10c ; db_xref "SPD:11/11F10" ; systematic_id "SPBC337.10c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0016226; iron-sulphur cluster assembly
GO:0005758; mitochondrial intermembrane space" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR071C; date=19700101 ||| term=human CIAPIN1 ortholog; date=20080507 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC337.10c" ; product "anamorsin family protein, involved in iron- sulphur cluster assembly (predicted)" ;
chromosome2 GeneDB mRNA 644943 646755 . - . mRNA SPBC947.13 ; systematic_id "SPBC947.13" ; colour "7" ; gene "SPBC947.13 ||| rba50" ; Alias "rba50" ; db_xref "SPD:21/21A12" ; GO "GO:0006366; transcription from RNA polymerase II promoter
GO:0005665; DNA-directed RNA polymerase II, core complex
GO:0003899; DNA-directed RNA polymerase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human RPAP1 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YDR527W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rba50" ; product "RNA polymerase II associated protein (predicted)" ;
chromosome2 GeneDB mRNA 4406049 4407195 . + . mRNA SPBC1289.12 ; systematic_id "SPBC1289.12" ; colour "2" ; gene "usp109 ||| SPBC1289.12" ; Alias "usp109" ; db_xref "SPD:16/16C04" ; GO "GO:0003723; RNA binding
GO:0005685; snRNP U1
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17264129; date=20070201 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "usp109" ; product "U1 snRNP-associated protein Usp109" ;
chromosome2 GeneDB mRNA 249052 252571 . + . mRNA SPBC31E1.06 ; systematic_id "SPBC31E1.06" ; colour "7" ; gene "SPBC31E1.06 ||| SPBC800.01 ||| bms1" ; Alias "bms1" ; db_xref "SPD:49/49G01" ; synonym "SPBC800.01" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0006364; rRNA processing
GO:0042255; ribosome assembly" ; controlled_curation "term=human BMS1L ortholog; date=20100701 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL217C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "bms1" ; product "GTP binding protein Bms1 (predicted)" ;
chromosome2 GeneDB mRNA 2269461 2272869 . - . mRNA SPBC16H5.13 ; db_xref "SPD:48/48A07" ; systematic_id "SPBC16H5.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC16H5.13" ; product "WD repeat protein, human WDR7 ortholog" ;
chromosome2 GeneDB mRNA 4041506 4045410 . - . mRNA SPBC215.08c ; systematic_id "SPBC215.08c" ; colour "7" ; gene "arg4 ||| SPBC215.08c" ; Alias "arg4" ; db_xref "KEGG:MAP00240; ||| KEGG:MAP00251; ||| SPD:30/30E04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR109C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006526; arginine biosynthesis
GO:0004088; carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0005524; ATP binding
GO:0005951; carbamoyl-phosphate synthase complex
GO:0000050; urea cycle" ; primary_name "arg4" ; product "arginine specific carbamoyl-phosphate synthase Arg4 (predicted)" ; EC_number "6.3.5.5" ;
chromosome2 GeneDB mRNA 33231 34780 . + . mRNA SPBC1348.11 ; systematic_id "SPBC1348.11" ; synonym "SPAC1348.11" ; pseudo "_no_value" ; colour "13" ; gene "SPBC1348.11" ; product "membrane transporter, pseudogene" ; note "frameshift and in frame stop codon, forced sequence to give valid translation" ;
chromosome2 GeneDB mRNA 4002946 4004715 . + . mRNA SPBC3B9.09 ; systematic_id "SPBC3B9.09" ; colour "2" ; gene "SPBC3B9.09 ||| vps36" ; note "possible additional N-terminal exon" ; Alias "vps36" ; db_xref "SPD:44/44E03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-RBZ; date=19700101 ||| term=orthologous to S. cerevisiae YLR417W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000814; ESCRT II complex
GO:0045053; protein retention in Golgi
GO:0043328; protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway
GO:0045324; late endosome to vacuole transport" ; primary_name "vps36" ; product "RBZ zinc finger protein Vps36" ;
chromosome2 GeneDB mRNA 2114219 2114347 . - . mRNA SPBC23G7.17c ; Alias "mat3-m" ; systematic_id "SPBC23G7.17c" ; synonym "matmi ||| mat1 ||| matmi_2" ; colour "2" ; controlled_curation "term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=mating-type m-specific polypeptide mi; date=20090429" ; gene "matmi_2 ||| matmi ||| mat1 ||| SPBC23G7.17c" ; primary_name "mat3-m" ; product "mating-type M-specific polypeptide Mi 2" ;
chromosome2 GeneDB mRNA 2231784 2233111 . - . mRNA SPBC14C8.16c ; systematic_id "SPBC14C8.16c" ; colour "2" ; gene "bot1 ||| SPBC14C8.16c" ; db_xref "SPD:13/13C12" ; Alias "bot1" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0009060; aerobic respiration
GO:0032543; mitochondrial translation
GO:0048311; mitochondrion distribution
GO:0008360; regulation of cell shape
GO:0032956; regulation of actin cytoskeleton organization and biogenesis
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR165W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18245278; date=20080226 ||| term=phenotype, cell morphology, bottle/skittle; qualifier=deletion; db_xref=PMID:18245278; date=20080226 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "bot1" ; product "mitochondrial ribosomal protein subunit S35" ;
chromosome2 GeneDB mRNA 2132849 2133394 . + . mRNA SPBC1711.02 ; systematic_id "SPBC1711.02" ; colour "2" ; gene "matmc_1 ||| matmc ||| SPBC1711.02" ; Alias "matmc_1" ; db_xref "SPD:05/05E10" ; synonym "matmc" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HMG box; date=19700101 ||| term=similar to S. pombe SPBC23G7.09 (identical); date=19700101 ||| term=mating-type m-specific polypeptide matmc; date=20090429 ||| term=species distribution, conserved in Fungi; date=20090429 ||| term=species distribution, conserved in Fungi only; date=20090429 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20090429 ||| term=DNA binding specificity, binds M-box 5'-ACAAT-3'; db_xref=PMID:9233981; cv=DNA_binding_specificity; date=20100304 ||| term=gene expression, transcriptionally regulates mfm1; db_xref=PMID:9233981; cv=gene_ex; date=20100304" ; GO "GO:0007531; mating type determination
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding" ; primary_name "matmc_1" ; product "mating-type m-specific polypeptide mc 1" ;
chromosome2 GeneDB mRNA 3923965 3925407 . - . mRNA SPBC1604.04 ; db_xref "SPD:14/14D11" ; systematic_id "SPBC1604.04" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0015234; thiamin transporter activity
GO:0071934; thiamin transmembrane transport
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR096W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=mitochondrial carrier; date=19700101" ; gene "SPBC1604.04" ; product "mitochondrial thiamine pyrophosphate transporter (predicted)" ;
chromosome2 GeneDB mRNA 2088238 2089775 . + . mRNA SPBC18E5.08 ; db_xref "SPD:05/05G12" ; systematic_id "SPBC18E5.08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=19700101" ; colour "10" ; gene "SPBC18E5.08" ; product "N-acetyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 2939962 2941229 . - . mRNA SPBC1703.13c ; db_xref "SPD:13/13B04" ; systematic_id "SPBC1703.13c" ; colour "7" ; GO "GO:0031966; mitochondrial membrane
GO:0005315; inorganic phosphate transporter activity
GO:0035435; phosphate transmembrane transport
GO:0006839; mitochondrial transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YER053C and YJR077C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC1703.13c" ; product "mitochondrial inorganic phosphate transporter (predicted)" ;
chromosome2 GeneDB mRNA 1022300 1023947 . + . mRNA SPBC146.12 ; systematic_id "SPBC146.12" ; colour "7" ; gene "coq6 ||| SPBC146.12" ; Alias "coq6" ; db_xref "SPD:21/21F08" ; GO "GO:0016709; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen
GO:0005743; mitochondrial inner membrane
GO:0006744; ubiquinone biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR255C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "coq6" ; product "monooxygenase Coq6 (predicted)" ;
chromosome2 GeneDB mRNA 3514712 3516528 . + . mRNA SPBC1105.05 ; systematic_id "SPBC1105.05" ; colour "2" ; gene "exg1 ||| SPBC1105.05" ; Alias "exg1" ; db_xref "SPD:19/19E04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR300W and YOR190W and YDR261C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=gene expression, expression cell cycle regulated; db_xref=PMID:20852022; date=20100924 ||| term=gene expression, transcriptionally regulated by Sep2; db_xref=PMID:20852022; date=20100924 ||| term=phenotype, no obvious phenotype; qualifier=deletion; db_xref=PMID:20852022; date=20100924" ; GO "GO:0004338; glucan 1,3-beta-glucosidase activity
GO:0046557; glucan endo-1,6-beta-glucosidase activity
GO:0005576; extracellular region
GO:0000935; barrier septum
GO:0070879; fungal-type cell wall beta-glucan metabolic process" ; primary_name "exg1" ; product "glucan 1,6-beta-glucosidase Exg1" ; EC_number "3.2.1.58" ;
chromosome2 GeneDB mRNA 502711 504031 . + . mRNA SPBC1685.04 ; db_xref "SPD:14/14A07" ; systematic_id "SPBC1685.04" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPBC1685.04" ; product "sequence orphan" ; note "possibly related to human TNFAIP3 interacting protein 1" ;
chromosome2 GeneDB mRNA 4035580 4037342 . + . mRNA SPBC215.05 ; systematic_id "SPBC215.05" ; colour "2" ; gene "gpd1 ||| SPBC215.05" ; Alias "gpd1" ; db_xref "SPD:32/32E11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=gene expression, expression induced by osmotic stress; db_xref=PMID:8825100; cv=gene_ex; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0005737; cytoplasm
GO:0004367; glycerol-3-phosphate dehydrogenase (NAD+) activity
GO:0006116; NADH oxidation
GO:0009992; cellular osmoregulation
GO:0006114; glycerol biosynthesis
GO:0006970; response to osmotic stress
GO:0006970; response to osmotic stress" ; primary_name "gpd1" ; product "glycerol-3-phosphate dehydrogenase Gpd1" ; EC_number "1.1.1.8" ;
chromosome2 GeneDB mRNA 4074226 4076043 . - . mRNA SPBC1347.08c ; db_xref "SPD:12/12A01" ; systematic_id "SPBC1347.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR279W; attribution=pers. comm. C. Chahwan; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, Aicardi- Goutieres syndrome; date=20100505" ; colour "7" ; GO "GO:0004523; ribonuclease H activity
GO:0043137; DNA replication, removal of RNA primer
GO:0032299; RNase H2 complex
GO:0032299; ribonuclease H2 complex" ; gene "SPBC1347.08c" ; product "ribonuclease H2 complex subunit (predicted)" ;
chromosome2 GeneDB mRNA 4228779 4230704 . + . mRNA SPBC16G5.09 ; db_xref "SPD:34/34F04" ; systematic_id "SPBC16G5.09" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL203C; date=19700101 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=19700101 ||| term=species distribution, conserved in Metazoa; date=19700101 ||| term=species distribution, conserved in Vertebrates; date=19700101 ||| term=human PPGB orthog; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=19700101" ; GO "GO:0005802; Golgi trans face
GO:0004185; serine-type carboxypeptidase activity
GO:0044257; cellular protein catabolic process" ; gene "SPBC16G5.09" ; product "serine carboxypeptidase (predicted)" ; EC_number "3.4.16.6" ;
chromosome2 GeneDB mRNA 4211015 4213540 . + . mRNA SPBC342.05 ; systematic_id "SPBC342.05" ; colour "2" ; db_xref "SPD:33/33G08" ; Alias "crb2" ; synonym "rhp9" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=BRCT domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9153313; date=19700101 ||| term=orthologous to S. cerevisiae YDR217C; date=19700101 ||| term=disease associated, cancer; date=20070704 ||| term=tudor domain; date=20080303 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0000790; nuclear chromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0007095; mitotic cell cycle G@-M transition DNA damage checkpoint
GO:0000723; telomere maintenance" ; primary_name "crb2" ; product "DNA repair protein Rad9 homolog, Rhp9" ;
chromosome2 GeneDB mRNA 378411 379787 . + . mRNA SPBC106.03 ; db_xref "SPD:16/16E11" ; systematic_id "SPBC106.03" ; colour "10" ; GO "GO:0005739; mitochondrion
GO:0016491; oxidoreductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YHR017W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC106.03" ; product "DUF1776 family protein" ;
chromosome2 GeneDB mRNA 1365158 1365715 . + . mRNA SPBC8D2.04 ; systematic_id "SPBC8D2.04" ; colour "2" ; db_xref "SPD:31/31D06" ; Alias "hht2" ; synonym "h3.2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBR010W and YNL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; residue=S10; cv=pt_mod; date=20090213 ||| term=modification, acetylated; cv=pt_mod; date=20100311 ||| term=modification, methylated; residue=K4|K9; cv=pt_mod; date=20100311 ||| term=target of Hrk1; qualifier=phosphorylated_by; db_xref=PMID:20929775; date=20101115" ; GO "GO:0030702; chromatin silencing at centromere
GO:0003677; DNA binding
GO:0006334; nucleosome assembly
GO:0000788; nuclear nucleosome
GO:0030702; chromatin silencing at centromere
GO:0006974; response to DNA damage stimulus
GO:0006974; response to DNA damage stimulus
GO:0030702; chromatin silencing at centromere
GO:0032015; regulation of Ran protein signal transduction
GO:0005515; protein binding" ; primary_name "hht2" ; product "histone H3 h3.2" ;
chromosome2 GeneDB mRNA 4067792 4069112 . + . mRNA SPBC1347.04 ; systematic_id "SPBC1347.04" ; colour "7" ; gene "SPBC1347.04 ||| tim54" ; Alias "tim54" ; db_xref "SPD:15/15G12" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0042721; mitochondrial inner membrane protein insertion complex
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL054W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "tim54" ; product "TIM22 inner membrane protein import complex subunit Tim54 (predicted)" ;
chromosome2 GeneDB mRNA 1502341 1503437 . - . mRNA SPBC11B10.10c ; systematic_id "SPBC11B10.10c" ; colour "2" ; gene "pht1 ||| SPBC11B10.10c" ; Alias "pht1" ; obsolete_name "pi001" ; db_xref "SPD:41/41D01" ; GO "GO:0006338; chromatin remodeling
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0000812; Swr1 complex
GO:0031011; Ino80 complex
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YOL012C; date=19700101 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:19040720; date=20080905 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:cccccccc; date=20090110" ; primary_name "pht1" ; product "histone H2A variant H2A.Z, Pht1" ;
chromosome2 GeneDB mRNA 1688336 1689599 . + . mRNA SPBC19C2.07 ; systematic_id "SPBC19C2.07" ; colour "2" ; gene "fba1 ||| SPBC19C2.07" ; Alias "fba1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00030; ||| KEGG:MAP00051; ||| KEGG:MAP00710; ||| SPD:40/40C08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL060C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0006096; glycolysis
GO:0004332; fructose-bisphosphate aldolase activity
GO:0005737; cytoplasm" ; primary_name "fba1" ; product "fructose-bisphosphate aldolase Fba1" ; EC_number "4.1.2.13" ;
chromosome2 GeneDB mRNA 1271978 1274014 . - . mRNA SPBC3D6.03c ; systematic_id "SPBC3D6.03c" ; colour "2" ; gene "SPBC3D6.03c ||| trz2" ; Alias "trz2" ; db_xref "SPD:27/27E12" ; synonym "sptrz2" ; GO "GO:0042781; 3'-tRNA processing endoribonuclease activity
GO:0034414; tRNA 3'-trailer cleavage, endonucleolytic
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKR079C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20090628 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:19555350; date=20090628 ||| term=protein sequence feature, mitochondrial signal sequence; db_xref=PMID:21208191; evidence=IMP; date=20110110 ||| term=phenotype, cell morphology, swollen cells; qualifier=overexpression; db_xref=PMID:21208191; date=20110110 ||| term=phenotype, growth defect, slow growth; qualifier=overexpression; db_xref=PMID:21208191; date=20110110" ; primary_name "trz2" ; product "mitochondrial 3'-tRNA processing endonuclease Trz2" ;
chromosome2 GeneDB mRNA 952816 954317 . - . mRNA SPBC646.14c ; systematic_id "SPBC646.14c" ; colour "2" ; gene "orc5 ||| SPBC646.14c" ; Alias "orc5" ; db_xref "SPD:40/40E10" ; GO "GO:0003688; DNA replication origin binding
GO:0005664; nuclear origin of replication recognition complex
GO:0043596; nuclear replication fork
GO:0006270; DNA replication initiation
GO:0005656; pre-replicative complex
GO:0005524; ATP binding
GO:0031261; DNA replication preinitiation complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YNL261W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "orc5" ; product "origin recognition complex subunit Orc5" ;
chromosome2 GeneDB mRNA 54322 55582 . - . mRNA SPBPB8B6.05c ; systematic_id "SPBPB8B6.05c" ; colour "7" ; gene "SPBPB8B6.05c" ; obsolete_name "SPAP8B6.05c" ; db_xref "SPD:51/51C09" ; GO "GO:0006530; asparagine catabolic process
GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR155C and YLR157C and YLR158C and YLR160C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; product "L-asparaginase (predicted)" ; EC_number "3.5.1.1" ;
chromosome2 GeneDB mRNA 2110568 2113037 . - . mRNA SPBC23G7.08c ; systematic_id "SPBC23G7.08c" ; colour "2" ; gene "rga7 ||| SPBC23G7.08c" ; Alias "rga7" ; db_xref "SPD:27/27G09" ; GO "GO:0030479; actin cortical patch
GO:0005100; Rho GTPase activator activity
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0032319; regulation of Rho GTPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR260C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rga7" ; product "Rho-type GTPase activating protein Rga7" ;
chromosome2 GeneDB mRNA 2413011 2416307 . + . mRNA SPBC1921.05 ; systematic_id "SPBC1921.05" ; colour "7" ; gene "SPBC1921.05 ||| ape2" ; Alias "ape2" ; obsolete_name "ape1" ; db_xref "SPD:38/38G07" ; GO "GO:0004177; aminopeptidase activity
GO:0006508; proteolysis
GO:0044248; cellular catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL157W and YHR047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "ape2" ; product "aminopeptidase Ape2 (predicted)" ; EC_number "3.4.11.-" ;
chromosome2 GeneDB mRNA 3391676 3393274 . - . mRNA SPBC3B8.03 ; db_xref "SPD:21/21A05" ; systematic_id "SPBC3B8.03" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009085; lysine biosynthetic process
GO:0004755; saccharopine dehydrogenase (NADP+, L- glutamate-forming) activity
GO:0005737; cytoplasm" ; gene "SPBC3B8.03" ; product "saccharopine dehydrogenase (predicted)" ; EC_number "1.5.1.10" ;
chromosome2 GeneDB mRNA 2157590 2159676 . + . mRNA SPBC1711.12 ; db_xref "SPD:46/46D08" ; systematic_id "SPBC1711.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=human APEH ortholog; qualifier=predicted; date=20100906" ; colour "7" ; gene "SPBC1711.12" ; product "oxidised protein hydrolase (predicted)" ;
chromosome2 GeneDB mRNA 3346629 3346975 . - . mRNA SPBC17D1.17 ; systematic_id "SPBC17D1.17" ; colour "8" ; note "conserved in japonicus" ; obsolete_name "SPNCRNA.542" ; Alias "tam11" ; synonym "SPNGAF32" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "tam11" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 2641916 2644830 . + . mRNA SPBC6B1.07 ; systematic_id "SPBC6B1.07" ; colour "2" ; gene "prp1 ||| zer1 ||| SPBC6B1.07" ; Alias "prp1" ; db_xref "SPD:47/47B06" ; synonym "zer1" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR055C; date=19700101 ||| term=complementation, does not functionally complement S. cerevisiae PRP6; db_xref=PMID:9286671; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, cell morphology, stubby cells; qualifier=ts; allele=prp1-4|prp1-1; db_xref=PMID:9286771; date=20100810" ; primary_name "prp1" ; product "U4/U6 x U5 tri-snRNP complex subunit Prp1" ;
chromosome2 GeneDB mRNA 1044271 1045566 . - . mRNA SPBC337.08c ; systematic_id "SPBC337.08c" ; colour "2" ; gene "ubi4 ||| SPBC337.08c" ; Alias "ubi4" ; db_xref "SPD:40/40D01" ; GO "GO:0007126; meiosis
GO:0016579; protein deubiquitination
GO:0016567; protein ubiquitination
GO:0031386; protein tag" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YLL039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ubi4" ; product "ubiquitin" ;
chromosome2 GeneDB mRNA 111221 113200 . - . mRNA SPBC359.03c ; systematic_id "SPBC359.03c" ; colour "7" ; gene "SPBC359.03c" ; Alias "aat1" ; db_xref "SPD:45/45F12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=name description, Amino Acid Transporter; db_xref=PMID:20388730; date=20100622 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; GO "GO:0005886; plasma membrane
GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport
GO:0005739; Golgi apparatus
GO:0005886; plasma membrane" ; primary_name "aat1" ; product "amino acid transporter Aat1 (predicted)" ;
chromosome2 GeneDB mRNA 3091991 3093399 . + . mRNA SPBC30D10.03c ; db_xref "SPD:22/22H10" ; systematic_id "SPBC30D10.03c" ; colour "7" ; GO "GO:0050483; IMP 5'-nucleotidase activity
GO:0006190; inosine salvage" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=orthologous to S. cerevisiae YOR155C; date=19700101" ; gene "SPBC30D10.03c" ; product "IMP 5'-nucleotidase (predicted)" ;
chromosome2 GeneDB mRNA 2764131 2765173 . - . mRNA SPBC336.13c ; db_xref "SPD:07/07H09" ; systematic_id "SPBC336.13c" ; colour "7" ; GO "GO:0042720; mitochondrial inner membrane peptidase complex
GO:0004222; metalloendopeptidase activity
GO:0008236; serine-type peptidase activity
GO:0006627; mitochondrial protein processing
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR035W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC336.13c" ; product "mitochondrial inner membrane peptidase complex catalytic subunit 2 (predicted)" ;
chromosome2 GeneDB mRNA 2682069 2683760 . - . mRNA SPBC3E7.12c ; systematic_id "SPBC3E7.12c" ; colour "7" ; gene "cfh4 ||| chr1 ||| SPBC3E7.12c" ; Alias "chr1" ; db_xref "SPD:21/21C04" ; synonym "cfh4" ; GO "GO:0051278; fungal-type cell wall polysaccharide biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Chs Four Homologue; cv=name_description; date=20060106 ||| term=gene expression, transcriptionally regulated by Ace2; evidence=TAS; db_xref=PMID:16678171; cv=gene_ex; date=20060818 ||| term=SEL1 repeat protein; date=20060818 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15449309; date=20060818 ||| term=orthologous to S. cerevisiae YBL061C and YDL203C and YER096W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "chr1" ; product "chitin synthase regulatory factor Chr1 (predicted)" ;
chromosome2 GeneDB mRNA 3434828 3437220 . - . mRNA SPBC2G2.01c ; systematic_id "SPBC2G2.01c" ; colour "2" ; gene "liz1 ||| SPBC2G2.01c ||| SPBC4B4.13c" ; Alias "liz1" ; db_xref "SPD:33/33B07" ; synonym "SPBC4B4.13c" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YCR028C and YAL067C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=phenotype, sensitive to HU; db_xref=PMID:15075270; cv=phenotype; date=20100628" ; GO "GO:0015887; pantothenate transmembrane transport
GO:0015233; pantothenate transporter activity
GO:0005887; integral to plasma membrane
GO:0006633; fatty acid biosynthesis
GO:0007346; regulation of mitotic cell cycle" ; primary_name "liz1" ; product "pantothenate transporter Liz1" ;
chromosome2 GeneDB mRNA 270558 274461 . - . mRNA SPBC800.10c ; db_xref "SPD:30/30D08" ; systematic_id "SPBC800.10c" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0006897; endocytosis
GO:0005509; calcium ion binding
GO:0000147; actin cortical patch assembly
GO:0006886; intracellular protein transport
GO:0006898; receptor-mediated endocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=EF hand; date=19700101 ||| term=EH domains; qualifier=inferred from context; date=19700101 ||| term=UBA domain protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YBL047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=disease associated, cancer; date=20100217 ||| term=human EPS15 ortholog; date=20100217" ; gene "SPBC800.10c" ; product "EPS15 repeat family actin cortical patch component (predicted)" ;
chromosome2 GeneDB mRNA 2215948 2217977 . - . mRNA SPBC14C8.07c ; systematic_id "SPBC14C8.07c" ; colour "2" ; gene "cdc18 ||| SPBC14C8.07c" ; Alias "cdc18" ; db_xref "SPD:40/40F10" ; GO "GO:0005656; pre-replicative complex
GO:0043596; nuclear replication fork
GO:0005524; ATP binding
GO:0003689; DNA clamp loader activity
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0006267; pre-replicative complex formation and maintenance
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; qualifier=ts; db_xref=PMID:6943408; date=20100705 ||| term=phenotype, DNA replication defects, endoreduplication; qualifier=overexpression; date=20100730 ||| term=orthologous to S. cerevisiae YJL194W; date=19700101 ||| term=gene expression, expressed during G1-S phase; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; cv=gene_ex; date=19700101 ||| term=AAA family ATPase; qualifier=inferred from context; date=20081106 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cdc18" ; product "MCM loader" ;
chromosome2 GeneDB mRNA 2545507 2547816 . + . mRNA SPBC29A10.05 ; systematic_id "SPBC29A10.05" ; colour "2" ; gene "exo1 ||| SPBC29A10.05 ||| mut2" ; Alias "exo1" ; db_xref "SPD:51/51E02" ; synonym "mut2" ; GO "GO:0005634; nucleus
GO:0017108; 5'-flap endonuclease activity
GO:0008409; 5'-3' exonuclease activity
GO:0003690; double-stranded DNA binding
GO:0043570; maintenance of DNA repeat elements
GO:0000706; meiotic DNA double-strand break processing
GO:0006298; mismatch repair
GO:0006298; mismatch repair
GO:0006298; mismatch repair
GO:0006312; mitotic recombination
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer, hereditary nonpolyposis colon; date=20070219 ||| term=disease associated, cancer; date=20070219 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7855597; date=20070219 ||| term=XP-G family; date=19700101 ||| term=orthologous to S. cerevisiae YOR033C and YDR263C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "exo1" ; product "exonuclease I Exo1" ;
chromosome2 GeneDB mRNA 4028025 4029569 . - . mRNA SPBC215.03c ; systematic_id "SPBC215.03c" ; colour "2" ; gene "csn1 ||| SPBC215.03c" ; note "N-terminal exon possibly incorrect" ; Alias "csn1" ; db_xref "SPD:23/23C05" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11504566; date=20100708 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008180; signalosome
GO:0010388; cullin deneddylation
GO:0030163; protein catabolism
GO:0060625; regulation of protein deneddylation
GO:0090329; regulation of DNA-dependent DNA replication
GO:0051445; regulation of progression through meiotic cell cycle
GO:0006974; response to DNA damage stimulus" ; primary_name "csn1" ; product "COP9/signalosome complex subunit Csn1" ;
chromosome2 GeneDB mRNA 2825395 2826661 . - . mRNA SPBC19C7.04c ; db_xref "SPD:02/02F11" ; systematic_id "SPBC19C7.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR273C and YMR295C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC19C7.04c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 1534776 1536113 . - . mRNA SPBC83.14c ; systematic_id "SPBC83.14c" ; colour "7" ; gene "rfc5 ||| SPBC83.14c" ; Alias "rfc5" ; db_xref "SPD:20/20E03" ; GO "GO:0005663; DNA replication factor C complex
GO:0006272; leading strand elongation
GO:0006281; DNA repair
GO:0003689; DNA clamp loader activity
GO:0031390; Ctf18 RFC-like complex
GO:0031391; Elg1 RFC-like complex
GO:0031389; Rad17 RFC-like complex
GO:0000790; nuclear chromatin
GO:0043596; nuclear relication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YBR087W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rfc5" ; product "DNA replication factor C complex subunit Rfc5 (predicted)" ;
chromosome2 GeneDB mRNA 1348287 1349220 . + . mRNA SPBC27B12.14 ; db_xref "SPD:31/31E01" ; systematic_id "SPBC27B12.14" ; controlled_curation "term=orthologous to S. cerevisiae YGR174C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "7" ; GO "GO:0032592; integral to mitochondrial membrane
GO:0033108; mitochondrial respiratory chain complex assembly" ; gene "SPBC27B12.14" ; product "mitochondrial membrane protein complex assembly protein (predicted)" ; note "truncated C-terminal" ;
chromosome2 GeneDB mRNA 1491831 1492937 . - . mRNA SPBC11B10.04c ; systematic_id "SPBC11B10.04c" ; colour "7" ; gene "SPBC11B10.04c ||| mrps28" ; Alias "mrps28" ; obsolete_name "pi007 ||| SPACTOKYO_453.29" ; db_xref "SPD:41/41G02" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003723; RNA binding
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR337W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrps28" ; product "mitochondrial ribosomal protein subunit S28 (predicted)" ;
chromosome2 GeneDB mRNA 358855 359346 . + . mRNA SPBC1271.07c ; db_xref "SPD:04/04G01" ; systematic_id "SPBC1271.07c" ; colour "7" ; GO "GO:0008080; N-acetyltransferase activity
GO:0006473; protein amino acid acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBC1271.07c" ; product "N-acetyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 4126315 4129227 . - . mRNA SPBC1861.01c ; systematic_id "SPBC1861.01c" ; colour "2" ; gene "SPBC1861.01c ||| SPBC56F2.13 ||| cnp3" ; Alias "cnp3" ; db_xref "SPD:37/37H08" ; synonym "SPBC56F2.13" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0019237; centromeric DNA binding
GO:0000070; mitotic sister chromatid segregation
GO:0000779; condensed chromosome, pericentric region" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AT hook protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YKL089W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cnp3" ; product "CENP-C" ;
chromosome2 GeneDB mRNA 749222 750708 . - . mRNA SPBC119.16c ; db_xref "SPD:44/44C08" ; systematic_id "SPBC119.16c" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL047W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; gene "SPBC119.16c" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 3114321 3116518 . - . mRNA SPBC1778.10c ; systematic_id "SPBC1778.10c" ; colour "2" ; gene "ppk21 ||| SPBC1778.10c ||| SPBC4C3.11" ; Alias "ppk21" ; db_xref "SPD:26/26G10" ; synonym "SPBC4C3.11" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PKC subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YDR490C and YOL100W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "ppk21" ; product "serine/threonine protein kinase Ppk21" ;
chromosome2 GeneDB mRNA 1151272 1154300 . + . mRNA SPBC409.08 ; systematic_id "SPBC409.08" ; colour "7" ; gene "SPBC409.08" ; note "was originally annotated as a pseudogene, but now has putative predicted splice with no branch site ||| splice may be incorrect, intron is unsupported, and this could be a single frameshift" ; db_xref "SPD:34/34G11" ; GO "GO:0006810; transport
GO:0022857; carrier activity
GO:0005886; plasma membrane
GO:0015846; polyamine transport
GO:0000297; spermine transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR138C and YPR156C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; product "spermine family transporter (predicted)" ;
chromosome2 GeneDB mRNA 1178002 1180478 . - . mRNA SPBC1306.01c ; systematic_id "SPBC1306.01c" ; colour "7" ; gene "SPBC409.22c ||| SPBC1306.01c" ; Alias "SPBC409.22c" ; db_xref "SPD:38/38C03" ; synonym "SPBC409.22c" ; GO "GO:0005739; mitochondrion
GO:0005525; GTP binding
GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPBC409.22c" ; product "mitochondrial translation elongation factor G (predicted)" ;
chromosome2 GeneDB mRNA 603314 603556 . + . mRNA SPBC839.20 ; Alias "new14" ; systematic_id "SPBC839.20" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "6" ; primary_name "new14" ; product "dubious" ;
chromosome2 GeneDB mRNA 3105116 3105412 . - . mRNA SPBC1778.05c ; db_xref "SPD:01/01D08" ; systematic_id "SPBC1778.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC1778.05c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 195990 197132 . - . mRNA SPBC1198.13c ; systematic_id "SPBC1198.13c" ; colour "7" ; gene "tfg2 ||| SPBC1198.13c ||| SPBC660.03c" ; Alias "tfg2" ; db_xref "SPD:16/16H07" ; synonym "SPBC660.03c" ; GO "GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity
GO:0005674; transcription factor TFIIF complex
GO:0004003; ATP-dependent DNA helicase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tfg2" ; product "transcription factor TFIIF complex beta subunit Tfg2 (predicted)" ;
chromosome2 GeneDB mRNA 4052558 4055749 . + . mRNA SPBC215.12 ; systematic_id "SPBC215.12" ; colour "2" ; gene "cwf10 ||| spef2 ||| snu114 ||| SPBC215.12" ; Alias "cwf10" ; db_xref "SPD:30/30A03" ; synonym "spef2 ||| snu114" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005681; spliceosome complex
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YKL173W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf10" ; product "GTPase Cwf10 (predicted)" ;
chromosome2 GeneDB mRNA 368510 370875 . - . mRNA SPBC1271.02 ; systematic_id "SPBC1271.02" ; colour "2" ; gene "stt3 ||| SPBC1271.02" ; Alias "stt3" ; db_xref "SPD:49/49E02" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0004576; oligosaccharyl transferase activity
GO:0004579; dolichyl-diphosphooligosaccharide- proteinglycotransferase activity
GO:0006487; protein amino acid N-linked glycosylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL022W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "stt3" ; product "oligosaccharyltransferase subunit Stt3" ;
chromosome2 GeneDB mRNA 4125818 4126258 . + . mRNA SPBC56F2.14 ; systematic_id "SPBC56F2.14" ; colour "7" ; gene "SPBC56F2.14 ||| mrpl44" ; note "added 20.03.2004, found by targeting ortholog of MRP144 TBLASTN; 100 aa but spliced so missed initially" ; Alias "mrpl44" ; db_xref "SPD:52/52C04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR225C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; primary_name "mrpl44" ; product "mitochondrial ribosomal protein subunit l44 (predicted)" ;
chromosome2 GeneDB mRNA 2990294 2994912 . - . mRNA SPBC2D10.14c ; systematic_id "SPBC2D10.14c" ; colour "2" ; gene "myo51 ||| SPBC2D10.14c" ; Alias "myo51" ; db_xref "SPD:30/30H10" ; GO "GO:0000915; cytokinesis, contractile ring formation
GO:0005826; contractile ring
GO:0000146; microfilament motor activity
GO:0016459; myosin complex
GO:0005524; ATP binding
GO:0003779; actin binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11112691; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:11112691; date=20100712 ||| term=IQ domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR326W; date=20070726 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "myo51" ; product "myosin type V" ;
chromosome2 GeneDB mRNA 1770003 1772629 . + . mRNA SPBC18H10.02 ; systematic_id "SPBC18H10.02" ; colour "2" ; gene "lcf1 ||| SPBC18H10.02" ; Alias "lcf1" ; db_xref "SPD:37/37F06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR317W and YIL009W and YMR246W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human ACSL3 and ACSL4 ortholog; date=20100217" ; GO "GO:0005737; cytoplasm
GO:0004467; long-chain-fatty-acid-CoA ligase activity
GO:0001676; long-chain fatty acid metabolic process
GO:0070317; negative regulation of G0 to G1 transition
GO:0001300; chronological cell aging" ; primary_name "lcf1" ; product "long-chain-fatty-acid-CoA ligase Lcf1" ; EC_number "6.2.1.3" ;
chromosome2 GeneDB mRNA 3380900 3383137 . + . mRNA SPBC3B8.07c ; systematic_id "SPBC3B8.07c" ; colour "2" ; gene "dsd1 ||| SPBC3B8.07c" ; Alias "dsd1" ; obsolete_name "SDCB3B8.07c" ; db_xref "SPD:17/17A06" ; GO "GO:0016021; integral to membrane
GO:0042284; sphingolipid delta-4 desaturase activity
GO:0046512; sphingosine biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20060411 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12633877; date=20060411 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "dsd1" ; product "dihydroceramide delta-4 desaturase" ; EC_number "1.14.-.-" ;
chromosome2 GeneDB mRNA 832985 835352 . - . mRNA SPBC36.01c ; db_xref "SPD:45/45G02" ; systematic_id "SPBC36.01c" ; colour "7" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC36.01c" ; product "spermidine family transporter (predicted)" ;
chromosome2 GeneDB mRNA 4251907 4252224 . + . mRNA SPBC16G5.19 ; db_xref "SPD:51/51G02" ; systematic_id "SPBC16G5.19" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC16G5.19" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 4147486 4149302 . + . mRNA SPBC1861.09 ; systematic_id "SPBC1861.09" ; colour "2" ; gene "ppk22 ||| SPBC1861.09" ; Alias "ppk22" ; db_xref "SPD:45/45C02" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0006468; protein amino acid phosphorylation
GO:0019236; response to pheromone" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNR047W and YCR091W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk22" ; product "serine/threonine protein kinase Ppk22 (predicted)" ;
chromosome2 GeneDB mRNA 778749 779965 . - . mRNA SPBC577.14c ; systematic_id "SPBC577.14c" ; colour "2" ; gene "spa1 ||| spa ||| SPBC577.14c" ; Alias "spa1" ; db_xref "SPD:07/07H08" ; synonym "spa" ; GO "GO:0008073; ornithine decarboxylase inhibitor activity
GO:0006591; ornithine metabolism
GO:0010967; regulation of polyamine biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spa1" ; product "ornithine decarboxylase antizyme with +1 programmed ribosomal frameshift Spa1" ;
chromosome2 GeneDB mRNA 4172385 4175591 . + . mRNA SPBC14F5.08 ; systematic_id "SPBC14F5.08" ; colour "2" ; gene "med7 ||| SPBC14F5.08" ; Alias "med7" ; db_xref "SPD:19/19B06" ; GO "GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10625684; date=19700101 ||| term=orthologous to S. cerevisiae YOL135C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "med7" ; product "mediator complex subunit Med7" ;
chromosome2 GeneDB mRNA 3462585 3464047 . - . mRNA SPBC2G2.15c ; systematic_id "SPBC2G2.15c" ; colour "7" ; gene "mrm2 ||| SPBC2G2.15c" ; Alias "mrm2" ; db_xref "SPD:10/10G09" ; GO "GO:0005739; mitochondrion
GO:0031167; rRNA methylation
GO:0008650; rRNA (uridine-2'-O-)-methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL136C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrm2" ; product "mitochondrial 2' O-ribose methyltransferase Mrm2 (predicted)" ;
chromosome2 GeneDB mRNA 3373306 3375450 . + . mRNA SPBC3B8.10c ; systematic_id "SPBC3B8.10c" ; colour "7" ; db_xref "SPD:22/22A04" ; Alias "nem1" ; GO "GO:0016021; integral to membrane
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0004721; phosphoprotein phosphatase activity
GO:0030437; ascospore formation
GO:0006998; nuclear envelope organization
GO:0006470; protein amino acid dephosphorylation
GO:0046890; regulation of lipid biosynthetic process
GO:0008287; Nem1-Spo7 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nem1" ; product "Nem1-Spo7 phosphatase complex catalytic subunit Nem1 (predicted)" ;
chromosome2 GeneDB mRNA 2700735 2701592 . - . mRNA SPBC4F6.08c ; systematic_id "SPBC4F6.08c" ; colour "7" ; gene "SPBC4F6.08c ||| mrpl39" ; Alias "mrpl39" ; db_xref "SPD:01/01C07" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl39" ; product "mitochondrial ribosomal protein subunit L39 (predicted)" ;
chromosome2 GeneDB mRNA 857518 858341 . - . mRNA SPBC36.08c ; systematic_id "SPBC36.08c" ; colour "7" ; gene "SPBC36.08c ||| cog2" ; note "candidate S. cerevisiae COG2 ortholog?" ; Alias "cog2" ; db_xref "SPD:08/08A03" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR120C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0000301; retrograde transport, vesicle recycling within Golgi
GO:0017119; Golgi transport complex" ; primary_name "cog2" ; product "Golgi transport complex subunit Cog2 (predicted)" ;
chromosome2 GeneDB mRNA 3421321 3421818 . + . mRNA SPBC4B4.05 ; systematic_id "SPBC4B4.05" ; colour "2" ; gene "smg1 ||| SPBC4B4.05" ; Alias "smg1" ; db_xref "SPD:02/02E05" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005685; snRNP U1
GO:0005681; spliceosome complex
GO:0000395; nuclear mRNA 5'-splice site recognition
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YFL017W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "smg1" ; product "Sm snRNP core protein Smg1" ;
chromosome2 GeneDB mRNA 2802356 2804284 . + . mRNA SPBC32F12.10 ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00030; ||| KEGG:MAP00052; ||| KEGG:MAP00500; ||| KEGG:MAP00521; ||| KEGG:MAP00522; ||| KEGG:MAP00530; ||| SPD:34/34H06" ; systematic_id "SPBC32F12.10" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL127W and YMR105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0019255; glucose 1-phosphate metabolic process
GO:0051156; glucose 6-phosphate utilization
GO:0004614; phosphoglucomutase activity
GO:0005829; cytosol
GO:0019388; galactose catabolic process
GO:0005978; glycogen biosynthetic process
GO:0005992; trehalose biosynthetic process
GO:0006011; UDP-glucose metabolic process" ; gene "SPBC32F12.10" ; product "phosphoglucomutase (predicted)" ; EC_number "5.4.2.2" ;
chromosome2 GeneDB mRNA 754652 755272 . + . mRNA SPBC577.02 ; systematic_id "SPBC577.02" ; colour "7" ; gene "rpl3801 ||| rpl38-1 ||| SPBC577.02" ; Alias "rpl3801" ; db_xref "SPD:31/31E07" ; synonym "rpl38-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR325C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl3801" ; product "60S ribosomal protein L38 (predicted)" ;
chromosome2 GeneDB mRNA 445403 447105 . - . mRNA SPBC428.03c ; systematic_id "SPBC428.03c" ; colour "2" ; gene "pho4 ||| SPBC428.03c" ; Alias "pho4" ; db_xref "SPD:21/21E07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, repressed by thiamine; cv=gene_ex; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YAR071W and YHR215W and YDL024C and YBR093C and YBR092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; GO "GO:0005576; extracellular region
GO:0009277; cell wall (sensu Fungi)
GO:0030287; periplasmic space (sensu Fungi)
GO:0003993; acid phosphatase activity
GO:0009897; external side of plasma membrane" ; primary_name "pho4" ; product "thiamine-repressible acid phosphatase Pho4" ; EC_number "3.1.3.2" ;
chromosome2 GeneDB mRNA 318461 320607 . - . mRNA SPBC1773.16c ; db_xref "SPD:36/36D02" ; systematic_id "SPBC1773.16c" ; colour "7" ; GO "GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000228; nuclear chromosome
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPBC1773.12 and SPAC11D3.07c and SPAPB24D3.01; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC1773.16c" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB mRNA 24916 25626 . + . mRNA SPBC1348.09 ; obsolete_name "SPAC1348.09" ; systematic_id "SPBC1348.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; colour "10" ; gene "SPBC1348.09" ; product "short chain dehydrogenase (predicted)" ;
chromosome2 GeneDB mRNA 3284618 3286460 . - . mRNA SPBC20F10.02c ; db_xref "SPD:36/36E01" ; systematic_id "SPBC20F10.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC20F10.02c" ; product "DUF1741 family protein" ;
chromosome2 GeneDB mRNA 3083317 3084348 . + . mRNA SPBC30D10.09c ; db_xref "SPD:10/10A04" ; systematic_id "SPBC30D10.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPBC30D10.09c" ; product "HVA22/TB2/DP1 family protein" ;
chromosome2 GeneDB mRNA 1130700 1132298 . - . mRNA SPBC1709.16c ; db_xref "SPD:18/18A06" ; systematic_id "SPBC1709.16c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPBC1709.16c" ; product "aromatic ring-opening dioxygenase (predicted)" ; EC_number "1.13.11.-" ;
chromosome2 GeneDB mRNA 1763513 1765161 . - . mRNA SPBC11G11.06c ; systematic_id "SPBC11G11.06c" ; colour "2" ; gene "sme1 ||| SPBC11G11.06c" ; Alias "sme1" ; db_xref "SPD:07/07C01" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005685; snRNP U1
GO:0000395; nuclear mRNA 5'-splice site recognition
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR159C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, protein coding overlap with adjacent gene; date=20090917" ; primary_name "sme1" ; product "Sm snRNP core protein Sme1" ;
chromosome2 GeneDB mRNA 2499575 2501290 . + . mRNA SPBC365.01 ; db_xref "SPD:16/16D07" ; systematic_id "SPBC365.01" ; colour "7" ; GO "GO:0031505; cell wall organization and biogenesis
GO:0015914; phospholipid transport
GO:0005737; cytoplasm
GO:0008525; phosphatidylcholine transporter activity
GO:0008526; phosphatidylinositol transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR380W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC365.01" ; product "sec14 cytosolic factor family (predicted)" ;
chromosome2 GeneDB mRNA 1424290 1427433 . - . mRNA SPBC691.03c ; systematic_id "SPBC691.03c" ; colour "7" ; gene "apl3 ||| SPBC691.03c" ; Alias "apl3" ; obsolete_name "pi033 ||| SPACTOKYO_453.02c" ; db_xref "SPD:49/49E12" ; GO "GO:0030122; AP-2 adaptor complex
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YBL037W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "apl3" ; product "AP-2 adaptor complex subunit Alp3 (predicted)" ;
chromosome2 GeneDB mRNA 1051668 1053539 . + . mRNA SPBC337.12 ; db_xref "SPD:21/21E08" ; systematic_id "SPBC337.12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPBC337.12" ; product "human ZC3H3 homolog" ;
chromosome2 GeneDB mRNA 4247589 4249678 . + . mRNA SPBC16G5.17 ; db_xref "SPD:45/45E09" ; systematic_id "SPBC16G5.17" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPAC3H8.08C; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPBC16G5.17" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome2 GeneDB mRNA 1531988 1532696 . + . mRNA SPBC83.12 ; db_xref "SPD:04/04E09" ; systematic_id "SPBC83.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPBC83.12" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 3885743 3886900 . - . mRNA SPBC211.07c ; systematic_id "SPBC211.07c" ; colour "7" ; gene "ubc8 ||| SPBC211.07c" ; Alias "ubc8" ; db_xref "SPD:05/05G04" ; GO "GO:0004842; ubiquitin conjugating enzyme activity
GO:0016567; protein ubiquitination
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ubc8" ; product "ubiquitin conjugating enzyme Ubc8 (predicted)" ;
chromosome2 GeneDB mRNA 1184427 1185324 . + . mRNA SPBC4.01 ; Alias "dni2" ; db_xref "SPD:12/12C07" ; systematic_id "SPBC4.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Delayed minus- Nitrogen Induction; cv=name_description; db_xref=PMID:19627505; date=20090817 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:*******; date=20090817 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20090202 ||| term=orthologous to S. cerevisiae YBR040W; date=19700101" ; colour "7" ; primary_name "dni2" ; product "tetraspan protein Dni2 (predicted)" ;
chromosome2 GeneDB mRNA 189432 191135 . + . mRNA SPBC1198.09 ; systematic_id "SPBC1198.09" ; colour "7" ; gene "ubc16 ||| SPBC1198.09" ; Alias "ubc16" ; db_xref "SPD:31/31E08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR133W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0016567; protein ubiquitination
GO:0004842; ubiquitin-protein ligase activity
GO:0007031; peroxisome organization and biogenesis" ; primary_name "ubc16" ; product "ubiquitin conjugating enzyme Ubc16 (predicted)" ; EC_number "6.3.2.19" ;
chromosome2 GeneDB mRNA 3397400 3399119 . + . mRNA SPBC3B8.01c ; systematic_id "SPBC3B8.01c" ; colour "2" ; gene "SPBC3B8.01c ||| arh1" ; Alias "arh1" ; db_xref "SPD:24/24B01" ; GO "GO:0005743; mitochondrial inner membrane
GO:0050660; FAD binding
GO:0050661; NADP binding
GO:0004324; ferredoxin-NADP+ reductase activity
GO:0015039; NADPH-adrenodoxin reductase activity
GO:0006879; cellular iron ion homeostasis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR376W; date=19700101 ||| term=human FDXR homolog; db_xref=PMID:18399988; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arh1" ; product "NADPH-adrenodoxin reductase Arh1" ;
chromosome2 GeneDB mRNA 2568938 2570810 . + . mRNA SPBC29A10.14 ; systematic_id "SPBC29A10.14" ; colour "2" ; gene "rec8 ||| SPBC29A10.14" ; Alias "rec8" ; db_xref "SPD:51/51E03" ; GO "GO:0008278; cohesin complex
GO:0000939; inner kinetochore of condensed chromosome
GO:0030893; meiotic cohesin complex
GO:0000228; nuclear chromosome
GO:0005515; protein binding
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0045143; homologous chromosome segregation
GO:0030999; linear element formation
GO:0042138; meiotic DNA double-strand break formation
GO:0007131; meiotic recombination
GO:0045144; meiotic sister chromatid segregation
GO:0045144; meiotic sister chromatid segregation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=misc, region specific activator of recombination; db_xref=PMID:010207075|PMID:10471700; cv=misc; date=19700101 ||| term=orthologous to S. cerevisiae YPR007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rec8" ; product "meiotic cohesin complex subunit Rec8" ;
chromosome2 GeneDB mRNA 285909 287883 . - . mRNA SPBC1773.03c ; db_xref "SPD:44/44D03" ; systematic_id "SPBC1773.03c" ; colour "10" ; GO "GO:0008483; transaminase activity
GO:0030170; pyridoxal phosphate binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824" ; gene "SPBC1773.03c" ; product "aminotransferase class-III, unknown specificty" ;
chromosome2 GeneDB mRNA 281556 283755 . + . mRNA SPBC1773.01 ; db_xref "SPD:26/26G05" ; systematic_id "SPBC1773.01" ; colour "7" ; GO "GO:0005516; calmodulin binding
GO:0000751; cell cycle arrest in response to pheromone" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC1773.01" ; product "striatin homolog (predicted)" ;
chromosome2 GeneDB mRNA 1935530 1938581 . - . mRNA SPBC16E9.11c ; systematic_id "SPBC16E9.11c" ; colour "7" ; gene "pub3 ||| SPBC16E9.11c" ; Alias "pub3" ; db_xref "SPD:39/39A04" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0006511; ubiquitin-dependent protein catabolic process
GO:0005543; phospholipid binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YER125W; date=19700101 ||| term=ubiquitin-protein ligase E3; date=20081104 ||| term=Nedd4/Rsp5 family; db_xref=PMID:11956316; date=20081001 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, liddle syndrome; date=20101102 ||| term=human NEDD4 and NEDD4L ortholog; date=20101102" ; primary_name "pub3" ; product "HECT-type ubiquitin-protein ligase Pub3 (predicted)" ;
chromosome2 GeneDB mRNA 3294240 3295184 . + . mRNA SPBC20F10.06 ; systematic_id "SPBC20F10.06" ; colour "2" ; gene "mad2 ||| SPBC20F10.06" ; Alias "mad2" ; db_xref "SPD:40/40A08" ; GO "GO:0007094; mitotic spindle checkpoint
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005515; protein binding
GO:0033597; mitotic checkpoint complex
GO:0045841; negative regulation of mitotic metaphase/anaphase transition
GO:0010997; anaphase-promoting complex binding
GO:0060565; inhibition of anaphase promoting complex activity during the cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=orthologous to S. cerevisiae YJL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mad2" ; product "spindle checkpoint protein Mad2" ;
chromosome2 GeneDB mRNA 278147 278758 . - . mRNA SPBC800.12c ; systematic_id "SPBC800.12c" ; colour "7" ; gene "SPBC800.12c" ; note "there may be some additional C-terminal exons; the ubiquitin domain appears to be truncated" ; db_xref "SPD:05/05A08" ; GO "GO:0032446; protein modification by small protein conjugation
GO:0070647; protein modification by small protein conjugation ore removal" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin family protein; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "ubiquitin family protein (predicted)" ;
chromosome2 GeneDB mRNA 4092213 4093696 . + . mRNA SPBC56F2.10c ; systematic_id "SPBC56F2.10c" ; colour "7" ; gene "alg5 ||| SPBC56F2.10c" ; Alias "alg5" ; db_xref "SPD:17/17F09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL227C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004581; dolichyl-phosphate beta- glucosyltransferase activity
GO:0006487; protein amino acid N-linked glycosylation
GO:0005789; endoplasmic reticulum membrane" ; primary_name "alg5" ; product "dolichyl-phosphate beta-glucosyltransferase Alg5 (predicted)" ; EC_number "2.4.1.117" ;
chromosome2 GeneDB mRNA 621896 623102 . + . mRNA SPBC839.12 ; systematic_id "SPBC839.12" ; colour "2" ; gene "rpc31 ||| SPBC839.12" ; Alias "rpc31" ; db_xref "SPD:07/07C05" ; GO "GO:0005666; DNA-directed RNA polymerase III complex
GO:0006383; transcription from RNA polymerase III promoter
GO:0003899; DNA-directed RNA polymerase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL151C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rpc31" ; product "DNA-directed RNA polymerase III complex subunit Rpc31" ;
chromosome2 GeneDB mRNA 3005582 3007778 . - . mRNA SPBC15D4.01c ; systematic_id "SPBC15D4.01c" ; colour "2" ; db_xref "SPD:40/40G11" ; Alias "klp9" ; synonym "SPBC2D10.21c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19686686; date=20090820 ||| term=kinesin family 6; db_xref=PMID:19686686; date=20090820 ||| term=target of Cdc2; qualifier=phosphorylated_by; db_xref=PMID:19686686; date=20090820 ||| term=target of Clp1; qualifier=dephosphorylated_by; db_xref=PMID:19686686; date=20090820 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:19686686; date=20090820 ||| term=subunit composition, homodimer; cv=subunit_composition; evidence=IDA; db_xref=PMID:19686686; date=20090820 ||| term=subunit composition, homotetrameric; cv=subunit_composition; evidence=IDA; db_xref=PMID:19686686; date=20090820 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; date=20100201" ; GO "GO:0003777; microtubule motor activity
GO:0007018; microtubule-based movement
GO:0005524; ATP binding
GO:0005875; microtubule associated complex
GO:0000092; mitotic anaphase B
GO:0005515; protein binding
GO:0051233; spindle midzone
GO:0005654; nucleoplasm
GO:0051012; microtubule sliding
GO:0051231; spindle elongation
GO:0016887; ATPase activity" ; primary_name "klp9" ; product "kinesin-like protein Klp9" ;
chromosome2 GeneDB mRNA 2819850 2825130 . + . mRNA SPBC19C7.03 ; systematic_id "SPBC19C7.03" ; colour "2" ; gene "cyr1 ||| git2 ||| SPBC19C7.03" ; Alias "cyr1" ; db_xref "SPD:41/41A12" ; synonym "git2" ; GO "; plasma membrane
GO:0045014; negative regulation of transcription by glucose
GO:0019933; cAMP-mediated signaling
GO:0007188; G-protein signaling, coupled to cAMP nucleotide second messenger
GO:0004016; adenylate cyclase activity
GO:0006171; cAMP biosynthesis
GO:0005515; protein binding
GO:0031137; regulation of conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:2172964; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:1550959; date=20100712 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505 ||| term=orthologous to S. cerevisiae YJL005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=leucine-rich repeat protein; date=20100727" ; primary_name "cyr1" ; product "adenylate cyclase" ; EC_number "4.6.1.1" ;
chromosome2 GeneDB mRNA 756591 757470 . + . mRNA SPBC577.04 ; db_xref "SPD:42/42H11" ; systematic_id "SPBC577.04" ; colour "7" ; GO "GO:0000445; THO complex part of transcription export complex
GO:0006406; mRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human THOC5 ortholog; date=20101013" ; gene "SPBC577.04" ; product "human THOC5 ortholog (predicted)" ;
chromosome2 GeneDB mRNA 3283329 3284316 . + . mRNA SPBC20F10.01 ; systematic_id "SPBC20F10.01" ; colour "2" ; gene "gar1 ||| SPBC25H2.01c ||| SPBC20F10.01" ; Alias "gar1" ; db_xref "SPD:31/31H02" ; synonym "SPBC25H2.01c" ; GO "GO:0003723; RNA binding
GO:0006364; 35S primary transcript processing
GO:0000154; rRNA modification
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR089C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gar1" ; product "snoRNP pseudouridylase complex protein Gar1" ;
chromosome2 GeneDB mRNA 2668157 2670085 . - . mRNA SPBC3E7.06c ; systematic_id "SPBC3E7.06c" ; colour "2" ; gene "SPBC3E7.06c ||| fnx2" ; db_xref "SPD:35/35G09" ; Alias "fnx2" ; GO "GO:0031166; integral to vacuolar membrane
GO:0000329; vacuolar membrane
GO:0015182; L-asparagine transmembrane transporter activity
GO:0015188; L-isoleucine transmembrane transporter activity
GO:0015189; L-lysine transmembrane transporter activity
GO:0032975; amino acid import into vacuole" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR293W and YMR088C; db_xref=PMID:18503766; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "fnx2" ; product "vacuolar membrane amino acid uptake transporter Fnx2" ;
chromosome2 GeneDB mRNA 2627289 2630752 . + . mRNA SPBC6B1.02 ; systematic_id "SPBC6B1.02" ; colour "2" ; gene "ppk30 ||| SPBC6B1.02" ; Alias "ppk30" ; db_xref "SPD:47/47D02" ; GO "GO:0030479; actin cortical patch
GO:0004674; protein serine/threonine kinase activity
GO:0000147; actin cortical patch assembly
GO:0006468; protein amino acid phosphorylation
GO:0007015; actin filament organization
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0007165; signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNL020C and YIL095W and YBR059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; qualifier=predicted; date=20090710" ; primary_name "ppk30" ; product "Ark1/Prk1 family protein kinase Ppk30" ;
chromosome2 GeneDB mRNA 221495 224081 . + . mRNA SPBC660.14 ; systematic_id "SPBC660.14" ; colour "2" ; gene "mik1 ||| SPBC660.14" ; Alias "mik1" ; db_xref "SPD:36/36F03" ; GO "GO:0045930; negative regulation of progression through mitotic cell cycle
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0033314; mitotic cell cycle DNA replication checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL187C; date=19700101 ||| term=gene expression, expressed during G1-S phase; cv=gene_ex; date=19700101 ||| term=gene expression, transcriptionally regulated by MBF complex; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Cdc2; qualifier=phosphorylates; db_xref=PMID:1706223; date=20100820" ; primary_name "mik1" ; product "mitotic inhibitor kinase Mik1" ;
chromosome2 GeneDB mRNA 4400435 4402851 . - . mRNA SPBC1289.10c ; systematic_id "SPBC1289.10c" ; colour "7" ; gene "SPBC1289.10c ||| adn2" ; Alias "adn2" ; db_xref "SPD:38/38B02" ; GO "GO:0003697; DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0005634; nucleus
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0010811; positive regulation of cell substrate adhesion" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER109C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, ADhesioN defective; db_xref=PMID:19542312; date=20090629 ||| term=phenotype, adhesion defects, cell-substrate adhesion, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706" ; primary_name "adn2" ; product "transcription factor (predicted)" ;
chromosome2 GeneDB mRNA 3090859 3091603 . - . mRNA SPBC30D10.04 ; systematic_id "SPBC30D10.04" ; colour "2" ; gene "swi3 ||| SPBC30D10.04" ; db_xref "SPD:03/03H05" ; Alias "swi3" ; GO "GO:0048478; replication fork protection
GO:0043596; nuclear replication fork
GO:0031298; replication fork protection complex
GO:0005515; protein binding
GO:0007531; mating type determination
GO:0005634; nucleus
GO:0043111; replication fork arrest" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=UniProtKB:Q6IUU5; date=20090423 ||| term=human TIPIN ortholog; date=20090423" ; primary_name "swi3" ; product "replication fork protection complex subunit Swi3" ;
chromosome2 GeneDB mRNA 3578128 3579613 . - . mRNA SPBC887.18c ; systematic_id "SPBC887.18c" ; colour "2" ; gene "SPBC887.18c ||| hfi1" ; Alias "hfi1" ; db_xref "SPD:22/22C02" ; GO "GO:0003712; transcription cofactor activity
GO:0016573; histone acetylation
GO:0006366; transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL254W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Eukaryotes only; date=20100212 ||| term=species distribution, conserved in Vertebrates; date=20100212 ||| term=species distribution, conserved in Metazoa; date=20100212 ||| term=human TADA1L ortholog; date=20100212" ; primary_name "hfi1" ; product "SAGA complex subunit Hfi1" ;
chromosome2 GeneDB mRNA 1541452 1541811 . - . mRNA SPBC83.19c ; db_xref "SPD:51/51H02" ; systematic_id "SPBC83.19c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPBC83.19c" ; product "sequence orphan" ;
chromosome2 GeneDB mRNA 1259189 1260669 . - . mRNA SPBC651.11c ; systematic_id "SPBC651.11c" ; colour "7" ; gene "apm3 ||| SPBC651.11c" ; Alias "apm3" ; db_xref "SPD:21/21B11" ; GO "GO:0016192; vesicle-mediated transport
GO:0030276; clathrin binding
GO:0006896; Golgi to vacuole transport
GO:0030123; AP-3 adaptor complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR288C; db_xref=PMID:14745133; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "apm3" ; product "AP-3 adaptor complex subunit Apm3 (predicted)" ;
chromosome2 GeneDB mRNA 3013318 3014990 . + . mRNA SPBC15D4.02 ; db_xref "SPD:34/34E09" ; systematic_id "SPBC15D4.02" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding
GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, gene structure updated; qualifier=N_term; date=20031028 ||| term=warning, gene structure may be incorrect; date=20031028" ; gene "SPBC15D4.02" ; product "transcription factor, zf-fungal binuclear cluster type (predicted)" ;
chromosome2 GeneDB mRNA 2637414 2640009 . - . mRNA SPBC6B1.06c ; systematic_id "SPBC6B1.06c" ; colour "2" ; gene "SPBC6B1.06c ||| ubp14" ; Alias "ubp14" ; obsolete_name "ucp2" ; db_xref "SPD:38/38D06" ; GO "GO:0005654; nucleoplasm
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-UBP type; date=19700101 ||| term=orthologous to S. cerevisiae YBR058C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human USP5 ortholog; date=20101001" ; primary_name "ubp14" ; product "ubiquitin C-terminal hydrolase Ubp14" ;
chromosome2 GeneDB mRNA 2046987 2047783 . + . mRNA SPBC29A3.05 ; systematic_id "SPBC29A3.05" ; colour "2" ; gene "vps71 ||| SPBC29A3.05" ; Alias "vps71" ; db_xref "SPD:05/05G02" ; GO "GO:0006338; chromatin remodeling
GO:0000812; Swr1 complex
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-HIT; date=19700101 ||| term=orthologous to S. cerevisiae YML041C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "vps71" ; product "Swr1 complex subunit Vps71" ;
chromosome2 GeneDB mRNA 365100 366806 . + . mRNA SPBC1271.04c ; db_xref "SPD:19/19G09" ; systematic_id "SPBC1271.04c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR068W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0050983; spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase
GO:0008612; hypusine biosynthesis from peptidyl- lysine
GO:0034038; deoxyhypusine synthase activity
GO:0005737; cytoplasm
GO:0006448; regulation of translational elongation" ; gene "SPBC1271.04c" ; product "eIF-5A-deoxyhypusine synthase (predicted)" ; EC_number "2.5.1.46" ;
chromosome2 GeneDB mRNA 4457742 4459777 . + . mRNA SPBPB2B2.01 ; db_xref "SPD:49/49B12" ; systematic_id "SPBPB2B2.01" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR068C and YBR069C and YCL025C and YDR046C and YDR508C and YEL063C and YGR191W and YKR039W and YNL268W and YNL270C and YOL020W and YOR348C and YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPBPB2B2.01" ; product "amino acid permease (predicted)" ;
chromosome2 GeneDB mRNA 2605945 2606998 . + . mRNA SPBC25B2.05 ; systematic_id "SPBC25B2.05" ; colour "2" ; gene "mis3 ||| SPBC25B2.05" ; Alias "mis3" ; db_xref "SPD:32/32C01" ; GO "GO:0005730; nucleolus
GO:0003723; RNA binding
GO:0006364; rRNA processing
GO:0051726; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, pear shaped; allele=mis3-244; qualifier=ts; db_xref=PMID:10947840; date=20100824 ||| term=phenotype, cell morphology, stubby cells; allele=mis3-244; qualifier=ts; db_xref=PMID:10947840; date=20100824 ||| term=phenotype, sensitive to HU; allele=mis3-244; qualifier=ts; cv=phenotype; db_xref=PMID:10947840; date=20091221 ||| term=KH domain; date=19700101 ||| term=orthologous to S. cerevisiae YCL059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis3" ; product "rRNA processing protein Mis3" ;
chromosome2 GeneDB mRNA 1102325 1103699 . + . mRNA SPBC1709.03 ; db_xref "SPD:19/19F11" ; systematic_id "SPBC1709.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to D. hansenii DEHA0G25432g; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPBC1709.03" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 2016395 2018936 . + . mRNA SPBP23A10.10 ; systematic_id "SPBP23A10.10" ; colour "2" ; gene "ppk32 ||| SPBP23A10.10" ; Alias "ppk32" ; db_xref "SPD:28/28F03" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YGL083W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ppk32" ; product "serine/threonine protein kinase Ppk32 (predicted)" ;
chromosome2 GeneDB mRNA 1475485 1477317 . - . mRNA SPBC32H8.12c ; systematic_id "SPBC32H8.12c" ; colour "2" ; gene "act1 ||| cps8 ||| SPBC32H8.12c" ; Alias "act1" ; obsolete_name "pi012" ; db_xref "SPD:50/50C12" ; synonym "cps8" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:1524835; date=19700101 ||| term=orthologous to S. cerevisiae YFL039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=misc, proteome hyperlink; db_xref=PMID:19040720; cv=misc; date=20081230 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0031011; Ino80 complex
GO:0035267; NuA4 histone acetyltransferase complex
GO:0000812; Swr1 complex
GO:0030479; actin cortical patch
GO:0005884; actin filament
GO:0005826; contractile ring
GO:0005628; forespore membrane
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0006338; chromatin remodeling
GO:0000915; cytokinesis, contractile ring formation
GO:0007163; establishment and/or maintenance of cell polarity
GO:0030100; regulation of endocytosis
GO:0043486; histone exchange
GO:0016573; histone acetylation" ; primary_name "act1" ; product "actin Act1" ;
chromosome2 GeneDB mRNA 1580605 1581758 . + . mRNA SPBC28F2.07 ; systematic_id "SPBC28F2.07" ; colour "2" ; gene "sfr1 ||| dds20 ||| mug13 ||| SPBC28F2.07" ; Alias "sfr1" ; db_xref "SPD:12/12D03" ; synonym "dds20 ||| mug13" ; GO "GO:0032798; Swi5-Sfr1 complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0042803; protein homodimerization activity
GO:0000730; DNA recombinase assembly
GO:0000724; double-strand break repair via homologous recombination
GO:0031573; intra-S DNA damage checkpoint
GO:0007533; mating type switching
GO:0045132; meiotic chromosome segregation
GO:0000709; meiotic joint molecule formation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, DNA recombination defects, gene conversion, reduced; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA recombination defects, long tract gene conversion, increased; qualifier=deletion; cv=phenotype; db_xref=PMID:17304215; date=20090210 ||| term=phenotype, DNA damage checkpoint defects, S-phase; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=misc, focus formation at DNA damage sites, Sfr1-dependent; cv=misc; db_xref=PMID:17304215; date=20090210 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YPL121C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=misc, Sfr1 assembly at DNA damage sites is dependent on Rhp51; db_xref=PMID:17304215; cv=misc; date=20090210 ||| term=misc, accumulation and persistence of Sfr1 foci in rhp54 delta cells; db_xref=PMID:17304215; cv=misc; date=20090210" ; primary_name "sfr1" ; product "Swi five-dependent recombination repair protein Sfr1" ;
chromosome2 GeneDB mRNA 1884188 1887940 . - . mRNA SPBC3H7.02 ; db_xref "SPD:47/47A05" ; systematic_id "SPBC3H7.02" ; colour "7" ; GO "GO:0008272; sulfate transport
GO:0005886; plasma membrane
GO:0015116; sulfate transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR294W and YLR092W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPBC3H7.02" ; product "sulfate transporter (predicted)" ;
chromosome2 GeneDB mRNA 383527 383960 . - . mRNA SPBC106.05c ; systematic_id "SPBC106.05c" ; colour "7" ; gene "SPBC106.05c ||| tim11" ; Alias "tim11" ; db_xref "SPD:01/01E10" ; GO "GO:0005198; structural molecule activity
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)
GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YDR322C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tim11" ; product "F0-ATPase subunit E (predicted)" ;
chromosome2 GeneDB mRNA 3112498 3114145 . + . mRNA SPBC1778.09 ; db_xref "SPD:19/19H05" ; systematic_id "SPBC1778.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human USP6N ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; gene "SPBC1778.09" ; product "GTPase activating protein (predicted)" ;
chromosome2 GeneDB mRNA 473670 474573 . - . mRNA SPBC428.16c ; systematic_id "SPBC428.16c" ; colour "2" ; gene "rhb1 ||| SPBC428.16c" ; Alias "rhb1" ; db_xref "SPD:07/07F12" ; GO "GO:0019003; GDP binding
GO:0005525; GTP binding
GO:0003924; GTPase activity
GO:0005515; protein binding
GO:0010963; regulation of L-arginine import
GO:0010963; regulation of L-arginine import
GO:0030996; cell cycle arrest in response to nitrogen starvation
GO:0007165; signal transduction
GO:0007264; small GTPase mediated signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10835385; date=19700101 ||| term=gene expression, constitutive; cv=gene_ex; db_xref=PMID:10835385; date=19700101 ||| term=orthologous to S. cerevisiae YCR027C; date=19700101 ||| term=modification, farnesylated; cv=pt_mod; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rhb1" ; product "Rheb GTPase Rhb1" ;
chromosome2 GeneDB mRNA 1070040 1071469 . + . mRNA SPBC1734.06 ; systematic_id "SPBC1734.06" ; colour "2" ; gene "rhp18 ||| SPBC1734.06" ; Alias "rhp18" ; db_xref "SPD:18/18D06" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0000790; nuclear chromatin
GO:0006301; postreplication repair
GO:0000077; DNA damage checkpoint
GO:0016567; protein ubiquitination
GO:0031144; proteasome localization" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-C3HC4 type (RING finger); date=20070212 ||| term=zinc finger protein; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=19700101 ||| term=SAP domain; date=19700101 ||| term=orthologous to S. cerevisiae YCR066W; date=19700101 ||| term=target is Cut8; db_xref=PMID:16096059; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=conditional|in_response_to_UV; allele=rad6-165; db_xref=PMID:11523791; date=20100709" ; primary_name "rhp18" ; product "Rad18 homolog Rhp18" ;
chromosome2 GeneDB mRNA 3243309 3244568 . + . mRNA SPBC19F8.07 ; systematic_id "SPBC19F8.07" ; colour "2" ; gene "crk1 ||| mop1 ||| mcs6 ||| cdk7 ||| SPBC19F8.07" ; Alias "mcs6" ; db_xref "SPD:32/32C10" ; synonym "crk1 ||| mop1 ||| cdk7" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0008353; RNA polymerase II carboxy-terminal domain kinase activity
GO:0019912; cyclin-dependent protein kinase activating kinase activity
GO:0004693; cyclin-dependent protein kinase activity
GO:0016251; general RNA polymerase II transcription factor activity
GO:0070817; P-TEFb-cap methyltransferase complex localization
GO:0070816; RNA polymerase II CTD terminal phosphorylation
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0006468; protein amino acid phosphorylation
GO:0090039; regulation of gene-specific transcription elongation from RNA polymerase II promoter
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8557036; date=19700101 ||| term=phenotype, septation defects; cv=phenotype; db_xref=PMID:19328067; date=20090712 ||| term=orthologous to S. cerevisiae YDL108W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15829570; date=20090110 ||| term=gene expression, transcriptionally regulates eng1 target genes; db_xref=PMID:19328067; cv=gene_ex; date=20090712 ||| term=gene expression, transcriptionally regulates ace2 target genes; db_xref=PMID:19328067; cv=gene_ex; date=20090712 ||| term=name description, Mitotic Catastrophe Suppressor; cv=name_description; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Rpb1; qualifier=phosphorylates; db_xref=PMID:19328067; date=20090712" ; primary_name "mcs6" ; product "cyclin-dependent protein kinase/CDK-activating kinase Mcs6" ; EC_number "2.7.11.23" ;
chromosome2 GeneDB mRNA 1142199 1143410 . + . mRNA SPBC409.06 ; systematic_id "SPBC409.06" ; colour "2" ; gene "SPBC409.06 ||| uch2" ; Alias "uch2" ; db_xref "SPD:16/16B04" ; GO "GO:0005634; nucleus
GO:0034399; nucleur periphery
GO:0000502; protease complex
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0071947; protein deubiquitination involved in proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human UCHL5 ortholog; date=20101001" ; primary_name "uch2" ; product "ubiquitin C-terminal hydrolase Uch2" ;
chromosome2 GeneDB mRNA 1127954 1130425 . - . mRNA SPBC1709.15c ; systematic_id "SPBC1709.15c" ; colour "7" ; gene "cft2 ||| SPBC1709.15c" ; Alias "cft2" ; db_xref "SPD:28/28G11" ; GO "; mRNA cleavage and polyadenylation specificity factor complex
GO:0005849; mRNA cleavage factor complex
GO:0006379; mRNA cleavage
GO:0006378; mRNA polyadenylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR115W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cft2" ; product "cleavage factor two Cft2/polyadenylation factor CPSF-73 (predicted)" ;
chromosome2 GeneDB mRNA 4231953 4233010 . + . mRNA SPBC16G5.10 ; db_xref "SPD:14/14F01" ; systematic_id "SPBC16G5.10" ; colour "7" ; GO "GO:0000175; 3'-5'-exoribonuclease activity
GO:0006364; 35S primary transcript processing
GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL111C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC16G5.10" ; product "exosome subunit Rrp42 (predicted)" ;
chromosome2 GeneDB mRNA 1438593 1442715 . - . mRNA SPBP22H7.05c ; systematic_id "SPBP22H7.05c" ; colour "7" ; gene "SPBP22H7.05c" ; obsolete_name "pi026 ||| SPACTOKYO_453.08" ; db_xref "SPD:49/49G05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=bromodomain; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YGR270W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0016887; ATPase activity
GO:0010552; positive regulation of gene-specific transcription from RNA polymerase II promoter" ; product "ATPase with bromodomain protein (predicted)" ;
chromosome2 GeneDB mRNA 661588 665070 . + . mRNA SPBC947.06c ; db_xref "SPD:24/24C04" ; systematic_id "SPBC947.06c" ; colour "7" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0015846; polyamine transport
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC947.06c" ; product "spermidine family transporter (predicted)" ;
chromosome2 GeneDB mRNA 2834086 2835185 . - . mRNA SPBC19C7.07c ; systematic_id "SPBC19C7.07c" ; colour "7" ; gene "SPBC19C7.07c ||| sen34" ; Alias "sen34" ; db_xref "SPD:11/11C07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAR008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000214; tRNA-intron endonuclease complex
GO:0000213; tRNA-intron endonuclease activity
GO:0005741; mitochondrial outer membrane
GO:0000379; tRNA-type intron splice site recognition and cleavage" ; primary_name "sen34" ; product "tRNA-splicing endonuclease catalytic subunit Sen34 (predicted)" ; EC_number "3.1.27.9" ;
chromosome2 GeneDB mRNA 2091892 2092234 . + . mRNA SPBC18E5.15 ; obsolete_name "SPBC18E5.14" ; systematic_id "SPBC18E5.15" ; pseudo "_no_value" ; colour "13" ; gene "SPBC18E5.15" ; product "pseudogene, DUF1773 family" ; note "similar to S. pombe SPCC330.04C ||| N-terminal truncated, frameshifted, " ;
chromosome2 GeneDB mRNA 3945747 3948883 . + . mRNA SPBC26H8.03 ; systematic_id "SPBC26H8.03" ; colour "2" ; gene "cho2 ||| SPBC26H8.03" ; Alias "cho2" ; db_xref "KEGG:MAP00260; ||| SPD:22/22A08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070115 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YGR157W; date=19700101" ; GO "GO:0006656; phosphatidylcholine biosynthesis
GO:0004608; phosphatidylethanolamine N- methyltransferase activity
GO:0005789; endoplasmic reticulum membrane" ; primary_name "cho2" ; product "phosphatidylethanolamine N-methyltransferase Cho2" ; EC_number "2.1.1.17" ;
chromosome2 GeneDB mRNA 2189708 2190257 . + . mRNA SPBC17G9.10 ; systematic_id "SPBC17G9.10" ; colour "7" ; gene "rpl1102 ||| rpl11-2 ||| SPBC17G9.10" ; Alias "rpl1102" ; db_xref "SPD:39/39H06" ; synonym "rpl11-2" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR102C and YGR085C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1102" ; product "60S ribosomal protein L11 (predicted)" ;
chromosome2 GeneDB mRNA 2274012 2276995 . + . mRNA SPBC16H5.12c ; systematic_id "SPBC16H5.12c" ; colour "10" ; gene "SPBC16H5.12c" ; db_xref "SPD:38/38C01" ; obsolete_name "SPNCRNA.537" ; synonym "SPNGAF91" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; product "conserved fungal protein" ;
chromosome2 GeneDB mRNA 3075759 3083079 . + . mRNA SPBC30D10.10c ; systematic_id "SPBC30D10.10c" ; colour "2" ; gene "tor1 ||| SPBC30D10.10c" ; Alias "tor1" ; db_xref "SPD:48/48H11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to rapamycin; allele=leucine_auxotroph; db_xref=PMID:15466417; cv=phenotype; date=20091126 ||| term=orthologous to S. cerevisiae YJR066W and YKL203C; date=19700101 ||| term=phosphoinositide 3-kinase family protein; db_xref=GOC:unpublished; date=20071228 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0031932; TORC 2 complex
GO:0031932; TORC 2 complex
GO:0016303; phosphatidylinositol 3-kinase activity
GO:0035004; phosphoinositide 3-kinase activity
GO:0043091; L-arginine import
GO:0031929; TOR signaling pathway
GO:0007569; cell aging
GO:0006995; cellular response to nitrogen starvation
GO:0009267; cellular response to starvation
GO:0033554; cellular response to stress
GO:0033554; cellular response to stress
GO:0031142; induction of conjugation in response to nitrogen starvation
GO:0048015; phosphoinositide-mediated signaling
GO:0031139; positive regulation of conjugation with cellular fusion
GO:0060357; regulation leucine import
GO:0031137; regulation of conjugation with cellular fusion
GO:0006970; response to osmotic stress
GO:0009266; response to temperature stimulus" ; primary_name "tor1" ; product "phosphatidylinositol kinase Tor1" ; EC_number "2.7.1.137" ;
chromosome2 GeneDB mRNA 734996 737288 . + . mRNA SPBC119.10 ; systematic_id "SPBC119.10" ; colour "2" ; gene "SPBC119.10 ||| asn1" ; Alias "asn1" ; db_xref "SPD:35/35A07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, growth auxotrophic for asparagine; db_xref=PMID:17622533; date=20100812 ||| term=orthologous to S. cerevisiae YPR145W and YGR124W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=experimental tools, selectable marker, amino acid auxotroph; db_xref=PMID:17622533; cv=ex_tools; date=20070716" ; GO "GO:0006529; asparagine biosynthetic process
GO:0005737; cytoplasm
GO:0004066; asparagine synthase (glutamine- hydrolyzing) activity" ; primary_name "asn1" ; product "asparagine synthetase" ; EC_number "6.3.5.4" ;
chromosome2 GeneDB mRNA 1236671 1239176 . - . mRNA SPBC651.01c ; systematic_id "SPBC651.01c" ; colour "7" ; gene "SPBC725.18c ||| SPBC651.01c ||| nog1" ; Alias "nog1" ; db_xref "SPD:33/33G04" ; synonym "SPBC725.18c" ; GO "GO:0005730; nucleolus
GO:0000054; ribosome export from nucleus
GO:0005525; GTP binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GTP1/OBG family; date=19700101 ||| term=orthologous to S. cerevisiae YPL093W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nog1" ; product "GTP binding protein Nog1 (predicted)" ;
chromosome2 GeneDB mRNA 1863337 1864186 . - . mRNA SPBC3H7.11 ; db_xref "SPD:10/10E08" ; systematic_id "SPBC3H7.11" ; colour "7" ; GO "GO:0051015; actin filament binding
GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0030036; actin cytoskeleton organization and biogenesis
GO:0005884; actin filament" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR239W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC3H7.11" ; product "actin binding methyltransferase (predicted)" ;
chromosome2 GeneDB mRNA 3060570 3061515 . + . mRNA SPBC30D10.18c ; systematic_id "SPBC30D10.18c" ; colour "2" ; gene "rpl102 ||| rpl1-2 ||| rpl10a-2 ||| SPBC30D10.18c" ; Alias "rpl102" ; db_xref "SPD:32/32A12" ; synonym "rpl1-2 ||| rpl10a-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL220W and YGL135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "rpl102" ; product "60S ribosomal protein L10a" ;
chromosome2 GeneDB mRNA 2123260 2125254 . - . mRNA SPBC23G7.13c ; db_xref "SPD:27/27D03" ; systematic_id "SPBC23G7.13c" ; colour "7" ; GO "GO:0015204; urea transmembrane transporter activity
GO:0071918; urea transmembrane transport
GO:0005886; plasma membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL016C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPBC23G7.13c" ; product "urea transporter (predicted)" ;
chromosome2 GeneDB mRNA 4360092 4362842 . + . mRNA SPBC244.01c ; systematic_id "SPBC244.01c" ; colour "2" ; gene "sid4 ||| SPBC244.01c" ; Alias "sid4" ; db_xref "SPD:37/37H11" ; GO "GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005198; structural molecule activity
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0031028; septation initiation signaling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9649519; date=20100727 ||| term=phenotype, multinucleate; db_xref=PMID:9649519; date=20100727 ||| term=phenotype, septum initiation defective; cv=phenotype; db_xref=PMID:9649519; date=20091006 ||| term=protein sequence feature, coiled-coil; cv=sequence_feature; qualifier=predicted|region; date=19700101 ||| term=name description, Septum Initiation Defective; db_xref=PMID:9649519; cv=name_description; date=20091006 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106 ||| term=orthologous to S. cerevisiae YDL239C and YNL225C; date=20091106" ; primary_name "sid4" ; product "SIN component scaffold protein Sid4" ;
chromosome2 GeneDB mRNA 1758237 1760432 . - . mRNA SPBC11G11.02c ; systematic_id "SPBC11G11.02c" ; colour "7" ; gene "end3 ||| SPBC11G11.02c" ; Alias "end3" ; db_xref "SPD:21/21H02" ; GO "GO:0005509; calcium ion binding
GO:0030479; actin cortical patch
GO:0006897; endocytosis
GO:0007015; actin filament organization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YNL084C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "end3" ; product "actin cortical patch component End3 (predicted)" ;
chromosome2 GeneDB mRNA 1110890 1112223 . + . mRNA SPBC1709.07 ; systematic_id "SPBC1709.07" ; colour "7" ; gene "SPBC1709.07 ||| erg27" ; Alias "erg27" ; db_xref "SPD:17/17E04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006696; ergosterol biosynthesis
GO:0000253; 3-keto sterol reductase activity
GO:0005789; endoplasmic reticulum membrane" ; primary_name "erg27" ; product "3-keto sterol reductase (predicted)" ; reserved_name "erg27" ;
chromosome2 GeneDB mRNA 936060 938148 . - . mRNA SPBC646.08c ; db_xref "SPD:45/45A06" ; systematic_id "SPBC646.08c" ; colour "7" ; GO "GO:0008142; oxysterol binding
GO:0006696; ergosterol biosynthetic process
GO:0030100; regulation of endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR001W and YKR003W and YOR237W and YPL145C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPBC646.08c" ; product "oxysterol binding protein (predicted)" ;
chromosome2 GeneDB mRNA 3004427 3005469 . + . mRNA SPBC2D10.20 ; systematic_id "SPBC2D10.20" ; colour "7" ; gene "ubc1 ||| SPBC2D10.20" ; Alias "ubc1" ; db_xref "SPD:13/13E05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR177W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016567; protein ubiquitination" ; primary_name "ubc1" ; product "ubiquitin conjugating enzyme Ubc1 (predicted)" ; EC_number "6.3.2.19" ;
chromosome2 GeneDB mRNA 2918847 2921047 . - . mRNA SPBC1703.03c ; db_xref "SPD:37/37C10" ; systematic_id "SPBC1703.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL063C; date=19700101 ||| term=armadillo repeat protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human HEATR3 ortholog; date=20100727" ; colour "10" ; gene "SPBC1703.03c" ; product "armadillo repeat protein, unknown biological role" ;
chromosome2 GeneDB mRNA 3715078 3717221 . - . mRNA SPBC25D12.02c ; systematic_id "SPBC25D12.02c" ; colour "2" ; gene "dnt1 ||| SPBC25D12.02c" ; Alias "dnt1" ; db_xref "SPD:46/46A05" ; GO "GO:0005730; nucleolus
GO:0005819; spindle
GO:0005515; protein binding
GO:0000183; chromatin silencing at rDNA
GO:0031030; negative regulation of septation initiation signaling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; qualifier=deletion; cv=phenotype; date=20060915 ||| term=orthologous to S. cerevisiae YKR010C and YJL076W; db_xref=PMID:17538026; date=20071009 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target of Clp1; qualifier=phosphorylated_by; date=20090926" ; primary_name "dnt1" ; product "nucleolar protein Dnt1" ;
chromosome2 GeneDB mRNA 789555 790294 . - . mRNA SPBC530.16 ; Alias "ksh1" ; synonym "new21" ; systematic_id "SPBC530.16" ; colour "7" ; controlled_curation "term=orthologous to S. cerevisiae YNL024C-A; date=20090721 ||| term=conserved in Fungi; date=20090721 ||| term=conserved in Eukaryotes; date=20090721 ||| term=conserved in Vertebrates; date=20090721 ||| term=conserved in Metazoa; date=20090721 ||| term=conserved in Eukaryotes only; date=20090721 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:21270388; date=20110131" ; primary_name "ksh1" ; product "DUF1242 family protein, secretory pathway component Ksh1" ;
chromosome2 GeneDB mRNA 2187455 2189134 . + . mRNA SPBC17G9.09 ; systematic_id "SPBC17G9.09" ; colour "7" ; gene "tif213 ||| SPBC17G9.09" ; db_xref "SPD:40/40D10" ; Alias "tif213" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER025W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tif213" ; product "translation initiation factor eIF2 gamma subunit (predicted)" ;
chromosome2 GeneDB mRNA 1232574 1235495 . + . mRNA SPBC725.16 ; systematic_id "SPBC725.16" ; colour "2" ; gene "res1 ||| sct1 ||| SPBC725.16" ; Alias "res1" ; db_xref "SPD:40/40G10" ; synonym "sct1" ; GO "GO:0030907; MBF transcription complex
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0045897; positive regulation of transcription, mitotic
GO:0051037; regulation of transcription, meiotic
GO:0007089; traversing start control point of mitotic cell cycle
GO:0000083; regulation of transcription involved in G1/S phase of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=APSES domain; date=19700101 ||| term=orthologous to S. cerevisiae YER111C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:11781565; date=20090720 ||| term=DNA binding specificity, complex binds MCB 5'-ACGCGT-3'; cv=DNA_binding_specificity; date=20100122 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:1464317; date=20100727" ; primary_name "res1" ; product "MBF transcription factor complex subunit Res1" ;
chromosome2 GeneDB mRNA 1134444 1135619 . + . mRNA SPBC1709.18 ; systematic_id "SPBC1709.18" ; colour "2" ; gene "tif452 ||| SPBC1709.18 ||| SPBC409.01" ; Alias "tif452" ; db_xref "SPD:32/32A06" ; synonym "SPBC409.01" ; GO "GO:0016281; eukaryotic translation initiation factor 4F complex
GO:0000339; RNA cap binding
GO:0003743; translation initiation factor activity
GO:0000184; mRNA catabolism, nonsense-mediated decay
GO:0033554; cellular response to stress
GO:0006413; translational initiation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL139C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tif452" ; product "translation initiation factor eIF4E 4F complex subunit" ;
chromosome2 GeneDB mRNA 3552775 3555633 . - . mRNA SPBC887.09c ; db_xref "SPD:38/38H02" ; systematic_id "SPBC887.09c" ; colour "7" ; GO "GO:0000920; cell separation during cytokinesis
GO:0007165; signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR353C; date=19700101 ||| term=human LRR57 ortholog; qualifier=predicted; date=20080414 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC887.09c" ; product "leucine-rich repeat protein Sog2 (predicted)" ;
chromosome2 GeneDB mRNA 3094849 3096336 . - . mRNA SPBC1778.01c ; systematic_id "SPBC1778.01c" ; colour "7" ; gene "SPBC30D10.01 ||| SPBC1778.01c ||| zuo1 ||| mpp11" ; Alias "zuo1" ; db_xref "SPD:20/20E12" ; synonym "mpp11 ||| SPBC30D10.01" ; GO "GO:0005737; cytoplasm
GO:0005840; ribosome
GO:0030544; Hsp70 protein binding
GO:0051082; unfolded protein binding
GO:0006457; protein folding
GO:0006450; regulation of translational fidelity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR285C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "zuo1" ; product "zuotin (predicted)" ;
chromosome2 GeneDB mRNA 465533 467125 . + . mRNA SPBC428.11 ; systematic_id "SPBC428.11" ; colour "2" ; gene "met17 ||| SPBC428.11" ; note "name from PMID:18808426" ; Alias "met17" ; db_xref "SPD:22/22D02" ; synonym "met17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=orthologous to S. cerevisiae YLR303W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0003961; O-acetylhomoserine aminocarboxypropyltransferase activity
GO:0019344; cysteine biosynthetic process
GO:0006555; methionine metabolic process
GO:0004124; cysteine synthase activity" ; primary_name "met17" ; product "homocysteine synthase Met17" ; EC_number "2.5.1.49" ;
chromosome2 GeneDB mRNA 1712754 1714898 . + . mRNA SPBC2F12.12c ; db_xref "SPD:36/36C12" ; systematic_id "SPBC2F12.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPBC2F12.12c" ; product "human c19orf29 ortholog" ;
chromosome2 GeneDB mRNA 2743780 2747467 . + . mRNA SPBC336.04 ; systematic_id "SPBC336.04" ; colour "2" ; gene "cdc6 ||| pol3 ||| pold ||| mis10 ||| SPBC336.04" ; Alias "cdc6" ; db_xref "SPD:34/34A06" ; synonym "pol3 ||| pold ||| mis10" ; GO "GO:0043625; delta DNA polymerase complex
GO:0043596; nuclear replication fork
GO:0008408; 3'-5' exonuclease activity
GO:0003887; DNA-directed DNA polymerase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0043137; DNA replication, removal of RNA primer
GO:0000731; DNA synthesis during DNA repair
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-ZnF type; date=19700101 ||| term=orthologous to S. cerevisiae YDL102W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; date=20070725 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; db_xref=PMID:19966286; date=20100311 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:958201; date=20100705" ; primary_name "cdc6" ; product "DNA polymerase delta catalytic subunit Cdc6" ; EC_number "2.7.7.7" ;
chromosome2 GeneDB mRNA 402556 404022 . + . mRNA SPBC106.13 ; db_xref "SPD:23/23A11" ; systematic_id "SPBC106.13" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0045721; negative regulation of gluconeogenesis
GO:0043161; proteasomal ubiquitin-dependent protein catabolic process
GO:0034657; GID complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CTLH domain; date=19700101 ||| term=orthologous to S. cerevisiae YIL097W; date=19700101 ||| term=human MAEA ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPBC106.13" ; product "ubiquitin ligase complex subunit, involved in proteasome-dependent catabolite inactivation of FBPase (predicted)" ;
chromosome3 GeneDB Contig 1 2452883 . + . Sequence chromosome3 ; Alias chromosome3
chromosome3 GeneDB source 1 2452883 . + . source chromosome3 ; systematic_id "chromosome3" ; origid "chromosome3" ; chromosome "3" ; so_type "chromosome" ;
chromosome3 GeneDB misc_feature 75289 75294 . + . misc_feature SPCC757.12 ; algorithm "DGPI v2.04" ; colour "" ; coord "603,604" ; type "GPI-Anchor" ; cleavage "3.7410002" ; note "GPI-Anchor Signal predicted for SPCC757.12 by DGPI v2.04 with cleavage site probability 3.7410002 near 599" ;
chromosome3 GeneDB misc_feature 283509 283514 . - . misc_feature SPCC553.10 ; algorithm "DGPI v2.04" ; colour "" ; coord "320,321" ; type "GPI-Anchor" ; cleavage "2.4940002" ; note "GPI-Anchor Signal predicted for SPCC553.10 by DGPI v2.04 with cleavage site probability 2.4940002 near 320" ;
chromosome3 GeneDB misc_feature 512323 512328 . - . misc_feature SPCC970.02 ; algorithm "DGPI v2.04" ; colour "" ; coord "405,406" ; type "GPI-Anchor" ; cleavage "0.5814" ; note "GPI-Anchor Signal predicted for SPCC970.02 by DGPI v2.04 with cleavage site probability 0.5814 near 414" ;
chromosome3 GeneDB misc_feature 834047 834052 . - . misc_feature SPCC63.02c ; algorithm "DGPI v2.04" ; colour "" ; coord "537,538" ; type "GPI-Anchor" ; cleavage "2.4940002" ; note "GPI-Anchor Signal predicted for SPCC63.02c by DGPI v2.04 with cleavage site probability 2.4940002 near 537" ;
chromosome3 GeneDB misc_feature 910894 910899 . + . misc_feature SPCC24B10.06 ; algorithm "DGPI v2.04" ; colour "" ; coord "129,130" ; type "GPI-Anchor" ; cleavage "1.72" ; note "GPI-Anchor Signal predicted for SPCC24B10.06 by DGPI v2.04 with cleavage site probability 1.72 near 129" ;
chromosome3 GeneDB misc_feature 959353 959358 . - . misc_feature SPCC1742.01 ; algorithm "DGPI v2.04" ; colour "" ; coord "1539,1540" ; type "GPI-Anchor" ; cleavage "3.7410002" ; note "GPI-Anchor Signal predicted for SPCC1742.01 by DGPI v2.04 with cleavage site probability 3.7410002 near 1539" ;
chromosome3 GeneDB misc_feature 978664 978669 . - . misc_feature SPCC1795.09 ; algorithm "DGPI v2.04" ; colour "" ; coord "504,505" ; type "GPI-Anchor" ; cleavage "0.77400005" ; note "GPI-Anchor Signal predicted for SPCC1795.09 by DGPI v2.04 with cleavage site probability 0.77400005 near 495" ;
chromosome3 GeneDB misc_feature 1310488 1310493 . + . misc_feature SPCC1322.10 ; algorithm "DGPI v2.04" ; colour "" ; coord "237,238" ; type "GPI-Anchor" ; cleavage "2.5800002" ; note "GPI-Anchor Signal predicted for SPCC1322.10 by DGPI v2.04 with cleavage site probability 2.5800002 near 237" ;
chromosome3 GeneDB misc_feature 1711004 1711009 . - . misc_feature SPCC191.03c ; algorithm "DGPI v2.04" ; colour "" ; coord "96,97" ; type "GPI-Anchor" ; cleavage "1.131" ; note "GPI-Anchor Signal predicted for SPCC191.03c by DGPI v2.04 with cleavage site probability 1.131 near 96" ;
chromosome3 GeneDB misc_feature 1736687 1736692 . - . misc_feature SPCC1450.07c ; algorithm "DGPI v2.04" ; colour "" ; coord "321,322" ; type "GPI-Anchor" ; cleavage "0.43200004" ; note "GPI-Anchor Signal predicted for SPCC1450.07c by DGPI v2.04 with cleavage site probability 0.43200004 near 323" ;
chromosome3 GeneDB misc_feature 1868561 1868566 . - . misc_feature SPCC1223.12c ; algorithm "DGPI v2.04" ; colour "" ; coord "389,390" ; type "GPI-Anchor" ; cleavage "2.5800002" ; note "GPI-Anchor Signal predicted for SPCC1223.12c by DGPI v2.04 with cleavage site probability 2.5800002 near 390" ;
chromosome3 GeneDB misc_feature 2043339 2043344 . - . misc_feature SPCC1739.08c ; algorithm "DGPI v2.04" ; colour "" ; coord "242,243" ; type "GPI-Anchor" ; cleavage "0.684" ; note "GPI-Anchor Signal predicted for SPCC1739.08c by DGPI v2.04 with cleavage site probability 0.684 near 241" ;
chromosome3 GeneDB misc_feature 2386508 2386513 . - . misc_feature SPCC1827.06c ; algorithm "DGPI v2.04" ; colour "" ; coord "339,340" ; type "GPI-Anchor" ; cleavage "0.64800006" ; note "GPI-Anchor Signal predicted for SPCC1827.06c by DGPI v2.04 with cleavage site probability 0.64800006 near 321" ;
chromosome3 GeneDB rRNA 1 1390 . - . rRNA SPRRNA.42 ; synonym "SPRRNA.21" ; systematic_id "SPRRNA.42" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "18S ribosomal RNA" ;
chromosome3 GeneDB misc_feature 1 2852 . - . misc_feature unknown_1 ; note "18S, 5.8S, and 28S ribosomal RNA" ;
chromosome3 GeneDB misc_feature 5542 13722 . - . misc_feature unknown_2 ; note "18S, 5.8S, and 28S ribosomal RNA" ;
chromosome3 GeneDB rRNA 6057 9541 . - . rRNA SPRRNA.47 ; synonym "SPRRNA.21" ; systematic_id "SPRRNA.47" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "28S ribosomal RNA" ;
chromosome3 GeneDB rRNA 9842 10006 . - . rRNA SPRRNA.50 ; synonym "SPRRNA.21" ; systematic_id "SPRRNA.50" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "5.8S ribosomal RNA" ;
chromosome3 GeneDB rRNA 10419 12260 . - . rRNA SPRRNA.43 ; synonym "SPRRNA.21" ; systematic_id "SPRRNA.43" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "18S ribosomal RNA" ;
chromosome3 GeneDB misc_feature 16412 24810 . - . misc_feature unknown_3 ; note "18S, 5.8S, and 28S ribosomal RNA" ;
chromosome3 GeneDB rRNA 16927 20411 . - . rRNA SPRRNA.48 ; synonym "SPRRNA.23" ; systematic_id "SPRRNA.48" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "28S ribosomal RNA" ;
chromosome3 GeneDB rRNA 20712 20876 . - . rRNA SPRRNA.51 ; synonym "SPRRNA.23" ; systematic_id "SPRRNA.51" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "5.8S ribosomal RNA" ;
chromosome3 GeneDB rRNA 21289 23130 . - . rRNA SPRRNA.44 ; synonym "SPRRNA.23" ; systematic_id "SPRRNA.44" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "18S ribosomal RNA" ;
chromosome3 GeneDB LTR 26343 26675 . - . LTR unknown_4 ; note "216 (-1) 10 349 Tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 28680 29423 . - . mRNA SPCP20C8.01c ; db_xref "SPD:41/41E10" ; systematic_id "SPCP20C8.01c" ; colour "12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20081212 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0070263; external side of fungal-type cell wall" ; gene "SPCP20C8.01c" ; product "cell surface glycoprotein (predicted), DUF2429 family" ;
chromosome3 GeneDB CDS 28680 29423 . - . mRNA SPCP20C8.01c ; colour "12" ;
chromosome3 GeneDB misc_RNA 29535 29898 . + . misc_RNA SPNCRNA.449 ; db_xref "PMID:18488015" ; synonym "SPNG2016" ; systematic_id "SPNCRNA.449" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 31185 31520 . - . mRNA SPCP20C8.02c ; db_xref "SPD:41/41A03" ; systematic_id "SPCP20C8.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20071122 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPCP20C8.02c" ; product "S. pombe specific UPF0321 family protein 1" ;
chromosome3 GeneDB CDS 31185 31520 . - . mRNA SPCP20C8.02c ; colour "12" ;
chromosome3 GeneDB LTR 31728 31925 . - . LTR unknown_5 ; note "446 (-1) 144 349 Tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 32624 33393 . + . mRNA SPCP20C8.03 ; systematic_id "SPCP20C8.03" ; pseudo "_no_value" ; controlled_curation "term=warning, frameshifted; date=20091230" ; colour "13" ; gene "SPCP20C8.03" ; product "pseudogene (predicted)" ;
chromosome3 GeneDB CDS 32624 32956 . + . mRNA SPCP20C8.03 ; colour "13" ;
chromosome3 GeneDB CDS 32959 33393 . + . mRNA SPCP20C8.03 ; colour "13" ;
chromosome3 GeneDB misc_feature 33134 33274 . + . misc_feature unknown_6 ; note "nominal overlap with SPCC1884 S. pombe chromosome 3" ;
chromosome3 GeneDB repeat_region 33134 36059 . + . repeat_region unknown_7 ; note "duplicated region" ;
chromosome3 GeneDB CDS_parts 36421 36657 . + . mRNA SPCP20C8.04 ; Alias "new22" ; systematic_id "SPCP20C8.04" ; controlled_curation "term=DUF1773; date=20090723 ||| term=no apparent S. cerevisiae ortholog; date=19700101 ||| term=coiled-coil; qualifier=predicted|region; date=20090723 ||| term=conserved in Fungi; date=20090723 ||| term=conserved in Fungi only; date=20090723 ||| term=cell surface glycoprotein; date=20090723 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090723 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "12" ; primary_name "new22" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 6" ;
chromosome3 GeneDB CDS 36421 36657 . + . mRNA SPCP20C8.04 ; colour "12" ;
chromosome3 GeneDB CDS_parts 36972 38788 . + . mRNA SPCC1884.01 ; systematic_id "SPCC1884.01" ; controlled_curation "term=warning, non-consensus splice sites; cv=warning; date=20100227 ||| term=species distribution, sequence orphan; date=20100227 ||| term=species distribution, sequence orphan, uncharacterised; date=20100227 ||| term=species distribution, identified in S. pombe only; date=20100227 ||| term=species distribution, no apparent orthologs; date=20100227" ; colour "8" ; gene "SPCC1884.01" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 36972 36985 . + . mRNA SPCC1884.01 ; colour "8" ;
chromosome3 GeneDB CDS 37169 37724 . + . mRNA SPCC1884.01 ; colour "8" ;
chromosome3 GeneDB CDS 37872 38142 . + . mRNA SPCC1884.01 ; colour "8" ;
chromosome3 GeneDB CDS 38193 38788 . + . mRNA SPCC1884.01 ; colour "8" ;
chromosome3 GeneDB misc_feature 36986 36991 . + . misc_feature unknown_8 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 37138 37168 . + . misc_feature unknown_9 ; colour "6" ; note "ctgatttttgcatttttggcactgaaaccag, splice branch and a cceptor" ;
chromosome3 GeneDB misc_feature 37725 37730 . + . misc_feature unknown_10 ; colour "6" ; note "gtgatt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 38143 38148 . + . misc_feature unknown_11 ; colour "6" ; note "gtattc, splice donor sequence" ;
chromosome3 GeneDB misc_RNA 41985 42728 . - . misc_RNA SPNCRNA.07 ; Alias "meu3" ; db_xref "PMID:12597277 ||| EMBL:AB084819" ; systematic_id "SPNCRNA.07" ; synonym "prl07 ||| prl7" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu3" ; product "non-coding RNA Meu3" ;
chromosome3 GeneDB LTR 43111 43459 . + . LTR unknown_12 ; note "Tf2 type LTR" ;
chromosome3 GeneDB 5'-UTR 43573 43853 . + . mRNA SPCC1884.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1884.02" ; systematic_id "SPCC1884.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 43854 45071 . + . mRNA SPCC1884.02 ; systematic_id "SPCC1884.02" ; colour "2" ; gene "nic1 ||| SPCC1884.02 ||| SPCC757.01" ; Alias "nic1" ; db_xref "SPD:19/19D04" ; synonym "SPCC757.01" ; GO "GO:0005887; integral to plasma membrane
GO:0015099; nickel ion transporter activity
GO:0035444; nickel ion transmembrane transport
GO:0034254; regulation of urea catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "nic1" ; product "NiCoT heavy metal ion transporter Nic1" ;
chromosome3 GeneDB CDS 43854 45071 . + . mRNA SPCC1884.02 ; colour "2" ;
chromosome3 GeneDB misc_feature 44098 44597 . - . misc_feature unknown_13 ; note "nominal overlap with cosmid SPCC1884, EM:AL031787 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 44098 44597 . + . misc_feature unknown_14 ; note "nominal overlap with cosmid SPCC757, EM:AL031825 S. pombe chromosome 3" ;
chromosome3 GeneDB CDS_parts 45695 46912 . - . mRNA SPCC757.02c ; db_xref "SPD:19/19D05" ; systematic_id "SPCC757.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPCC757.02c" ; product "epimarase (predicted)" ;
chromosome3 GeneDB CDS 45695 46912 . - . mRNA SPCC757.02c ; colour "10" ;
chromosome3 GeneDB 3'-UTR 47606 47740 . - . mRNA SPCC757.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.03c" ; systematic_id "SPCC757.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 47741 48475 . - . mRNA SPCC757.03c ; db_xref "SPD:08/08H07" ; systematic_id "SPCC757.03c" ; colour "10" ; GO "GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR533C and YPL280W and YOR391C and YMR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC757.03c" ; product "ThiJ domain protein" ;
chromosome3 GeneDB CDS 47741 48475 . - . mRNA SPCC757.03c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 48474 48486 . - . mRNA SPCC757.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.03c" ; systematic_id "SPCC757.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 49076 49156 . + . misc_RNA SPNCRNA.450 ; db_xref "PMID:18488015" ; synonym "SPNG2021" ; systematic_id "SPNCRNA.450" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB LTR 49206 49550 . + . LTR unknown_15 ; note "tf2-type LTR" ;
chromosome3 GeneDB misc_RNA 49802 50142 . + . misc_RNA SPNCRNA.451 ; db_xref "PMID:18488015" ; synonym "SPNG2023" ; systematic_id "SPNCRNA.451" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 50358 52537 . + . mRNA SPCC757.04 ; db_xref "SPD:46/46F06" ; systematic_id "SPCC757.04" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR337W and YLR098C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC757.04" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB CDS 50358 50552 . + . mRNA SPCC757.04 ; colour "7" ;
chromosome3 GeneDB CDS 50678 52537 . + . mRNA SPCC757.04 ; colour "7" ;
chromosome3 GeneDB misc_feature 50553 50558 . + . misc_feature unknown_16 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 50658 50677 . + . misc_feature unknown_17 ; colour "6" ; note "ctaatttaatcaatcgacag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 52538 52722 . + . mRNA SPCC757.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.04" ; systematic_id "SPCC757.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 52887 52909 . - . mRNA SPCC757.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.05c" ; systematic_id "SPCC757.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 52910 54112 . - . mRNA SPCC757.05c ; db_xref "SPD:19/19C04" ; systematic_id "SPCC757.05c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=20100309 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0008237; peptidase activity" ; gene "SPCC757.05c" ; product "peptidase family M20 protein" ;
chromosome3 GeneDB CDS 52910 54112 . - . mRNA SPCC757.05c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 54111 54151 . - . mRNA SPCC757.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.05c" ; systematic_id "SPCC757.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 54496 55150 . + . misc_RNA SPNCRNA.452 ; db_xref "PMID:18488015" ; synonym "SPNG2025" ; systematic_id "SPNCRNA.452" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 55579 56029 . + . mRNA SPCC757.06 ; db_xref "SPD:03/03H11" ; systematic_id "SPCC757.06" ; controlled_curation "term=warning, gene structure may be incorrect; cv=warning; date=20100325 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC757.06" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 55579 55608 . + . mRNA SPCC757.06 ; colour "8" ;
chromosome3 GeneDB CDS 55666 55779 . + . mRNA SPCC757.06 ; colour "8" ;
chromosome3 GeneDB CDS 55823 56029 . + . mRNA SPCC757.06 ; colour "8" ;
chromosome3 GeneDB misc_feature 55609 55614 . + . misc_feature unknown_18 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 55651 55665 . + . misc_feature unknown_19 ; colour "6" ; note "ttgatatttttccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 55780 55785 . + . misc_feature unknown_20 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 55802 55822 . + . misc_feature unknown_21 ; colour "6" ; note "ttaatttcggcaaaatcaaag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 56779 56926 . - . mRNA SPCC757.07c ; Alias "ctt1" ; ID "SPCC757.07c" ; db_xref "EMBL:D89126" ; systematic_id "SPCC757.07c" ; primary_name "ctt1" ;
chromosome3 GeneDB CDS_parts 56927 58465 . - . mRNA SPCC757.07c ; systematic_id "SPCC757.07c" ; colour "2" ; db_xref "SPD:24/24H11" ; Alias "ctt1" ; synonym "cta1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, acatalasia; date=20060725 ||| term=orthologous to S. cerevisiae YDR256C and YGR088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, peroxisomal disorders; date=20091123" ; GO "GO:0004096; catalase activity
GO:0005759; mitochondrial matrix
GO:0005782; peroxisomeal matrix
GO:0034599; cellular response to oxidative stress
GO:0042744; hydrogen peroxide catabolic process" ; primary_name "ctt1" ; product "catalase" ; EC_number "1.11.1.6" ;
chromosome3 GeneDB CDS 56927 58465 . - . mRNA SPCC757.07c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 58466 58525 . - . mRNA SPCC757.07c ; Alias "ctt1" ; ID "SPCC757.07c" ; db_xref "EMBL:D89126" ; systematic_id "SPCC757.07c" ; primary_name "ctt1" ;
chromosome3 GeneDB misc_RNA 59326 60703 . + . misc_RNA SPNCRNA.453 ; db_xref "PMID:18488015" ; synonym "SPNG2030" ; systematic_id "SPNCRNA.453" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 60428 60694 . - . mRNA SPCC757.15 ; db_xref "PMID:18488015" ; systematic_id "SPCC757.15" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC757.15" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 60428 60490 . - . mRNA SPCC757.15 ; colour "8" ;
chromosome3 GeneDB CDS 60548 60694 . - . mRNA SPCC757.15 ; colour "8" ;
chromosome3 GeneDB intron 60704 60773 . - . intron unknown_22 ;
chromosome3 GeneDB 5'-UTR 62840 62998 . + . mRNA SPCC757.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.08" ; systematic_id "SPCC757.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 62999 64027 . + . mRNA SPCC757.08 ; db_xref "SPD:15/15E10" ; systematic_id "SPCC757.08" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0000175; 3'-5'-exoribonuclease activity
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR280W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC757.08" ; product "exosome subunit Rrp45 (predicted)" ;
chromosome3 GeneDB CDS 62999 63162 . + . mRNA SPCC757.08 ; colour "7" ;
chromosome3 GeneDB CDS 63217 63336 . + . mRNA SPCC757.08 ; colour "7" ;
chromosome3 GeneDB CDS 63436 64027 . + . mRNA SPCC757.08 ; colour "7" ;
chromosome3 GeneDB misc_feature 63163 63168 . + . misc_feature unknown_23 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 63201 63216 . + . misc_feature unknown_24 ; colour "6" ; note "ctaacaagtactgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 63337 63342 . + . misc_feature unknown_25 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 63423 63435 . + . misc_feature unknown_26 ; colour "6" ; note "ctaataatcacag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 64216 65488 . - . mRNA SPCC757.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.09c" ; systematic_id "SPCC757.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 65489 66685 . - . mRNA SPCC757.09c ; systematic_id "SPCC757.09c" ; colour "2" ; gene "rnc1 ||| SPCC757.09c" ; Alias "rnc1" ; db_xref "SPD:19/19B07" ; GO "GO:0006469; negative regulation of protein kinase activity
GO:0043409; negative regulation of MAPKKK cascade
GO:0003729; mRNA binding
GO:0048255; mRNA stabilization
; protein binding" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=KH domain; date=19700101 ||| term=orthologous to S. cerevisiae YBR233W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:12931193; date=20100826 ||| term=target of Pmk1; qualifier=phosphorylated_by; db_xref=PMID:12931193; date=20100826" ; primary_name "rnc1" ; product "RNA-binding protein that suppresses calcineurin deletion Rnc1" ;
chromosome3 GeneDB CDS 65489 66685 . - . mRNA SPCC757.09c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 66684 66968 . - . mRNA SPCC757.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.09c" ; systematic_id "SPCC757.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 68287 68611 . + . mRNA SPCC757.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.10" ; systematic_id "SPCC757.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 68612 69235 . + . mRNA SPCC757.10 ; systematic_id "SPCC757.10" ; colour "7" ; gene "vph2 ||| SPCC757.10" ; Alias "vph2" ; db_xref "SPD:07/07A11" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0070070; proton-transporting V-type ATPase complex assembly
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL119C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "vph2" ; product "endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted)" ;
chromosome3 GeneDB CDS 68612 68953 . + . mRNA SPCC757.10 ; colour "7" ;
chromosome3 GeneDB CDS 69017 69235 . + . mRNA SPCC757.10 ; colour "7" ;
chromosome3 GeneDB misc_feature 68954 68959 . + . misc_feature unknown_27 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 69003 69016 . + . misc_feature unknown_28 ; colour "6" ; note "ttaatattatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 69236 69387 . + . mRNA SPCC757.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.10" ; systematic_id "SPCC757.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 69495 69640 . - . mRNA SPCC757.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.11c" ; systematic_id "SPCC757.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 69641 71056 . - . mRNA SPCC757.11c ; db_xref "SPD:21/21G10" ; systematic_id "SPCC757.11c" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPCC613.02 and SPCC613.01 and SPCC330.07c; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPCC757.11c" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB CDS 69641 71056 . - . mRNA SPCC757.11c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 71055 71200 . - . mRNA SPCC757.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.11c" ; systematic_id "SPCC757.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 71400 71471 . + . tRNA SPCTRNAHIS.03 ; systematic_id "SPCTRNAHIS.03" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033452; GTG codon-amino acid adaptor activity" ; gene "SPCTRNAHIS.03" ; product "tRNA Histidine" ; note "tRNA His anticodon GTG" ;
chromosome3 GeneDB 5'-UTR 72907 73482 . + . mRNA SPCC757.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.12" ; systematic_id "SPCC757.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 73483 75360 . + . mRNA SPCC757.12 ; db_xref "SPD:26/26D05" ; systematic_id "SPCC757.12" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, glycosylated; qualifier=N-linked; cv=pt_mod; date=20060611 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060611 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0009986; cell surface
; cell wall
GO:0009897; external side of plasma membrane
GO:0004556; alpha-amylase activity
GO:0008360; regulation of cell shape
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; gene "SPCC757.12" ; product "alpha-amylase homolog (predicted)" ; EC_number "3.2.1.1" ;
chromosome3 GeneDB CDS 73483 75360 . + . mRNA SPCC757.12 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 75361 75492 . + . mRNA SPCC757.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC757.12" ; systematic_id "SPCC757.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 76513 77990 . + . misc_RNA SPNCRNA.454 ; db_xref "PMID:18488015" ; synonym "SPNG2036" ; systematic_id "SPNCRNA.454" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 78044 79612 . + . mRNA SPCC757.13 ; db_xref "SPD:25/25C11" ; systematic_id "SPCC757.13" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0071916; dipeptide transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR152W and YLR004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC757.13" ; product "dipeptide transmemembrane transporter (predicted)" ;
chromosome3 GeneDB CDS 78044 79612 . + . mRNA SPCC757.13 ; colour "7" ;
chromosome3 GeneDB misc_feature 79801 81325 . - . misc_feature unknown_29 ; note "nominal overlap with cosmid SPCC757 and cosmid SPCC613" ;
chromosome3 GeneDB 5'-UTR 80387 80546 . + . mRNA SPCC613.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.01" ; systematic_id "SPCC613.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 80547 82040 . + . mRNA SPCC613.01 ; systematic_id "SPCC613.01" ; colour "7" ; gene "SPCC757.14 ||| SPCC613.01" ; Alias "SPCC757.14" ; db_xref "SPD:24/24B07" ; synonym "SPCC757.14" ; GO "GO:0016021; integral to membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPCC613.02 and SPCC330.07c and SPCC757.11c (paralogs); date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "SPCC757.14" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB CDS 80547 82040 . + . mRNA SPCC613.01 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 82041 82092 . + . mRNA SPCC613.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.01" ; systematic_id "SPCC613.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 82697 82859 . + . mRNA SPCC613.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.02" ; systematic_id "SPCC613.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 82860 84353 . + . mRNA SPCC613.02 ; db_xref "SPD:24/24B08" ; systematic_id "SPCC613.02" ; colour "7" ; GO "GO:0016021; integral to membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPCC613.01 and SPCC330.07c and SPCC757.11c (paralogs); date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC613.02" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB CDS 82860 84353 . + . mRNA SPCC613.02 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 84354 84840 . + . mRNA SPCC613.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.02" ; systematic_id "SPCC613.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 84683 85096 . - . misc_RNA SPNCRNA.22 ; Alias "prl22" ; db_xref "PMID:12597277 ||| EMBL:AB084834" ; systematic_id "SPNCRNA.22" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl22" ; gene "prl22 ||| SPNCRNA.22" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB 5'-UTR 85338 85362 . + . mRNA SPCC613.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.03" ; systematic_id "SPCC613.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 85363 85932 . + . mRNA SPCC613.03 ; db_xref "SPD:06/06A08" ; systematic_id "SPCC613.03" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005509; calciom ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR250W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC613.03" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 85363 85932 . + . mRNA SPCC613.03 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 86328 86369 . - . mRNA SPCC613.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.04c" ; systematic_id "SPCC613.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 86370 88610 . - . mRNA SPCC613.04c ; systematic_id "SPCC613.04c" ; colour "2" ; gene "rng3 ||| SPCC613.04c" ; Alias "rng3" ; db_xref "SPD:28/28A06" ; GO "GO:0005826; contractile ring
GO:0017022; myosin binding
GO:0005515; protein binding
GO:0000915; cytokinesis, contractile ring formation
GO:0034613; cellular protein localization
GO:0051083; 'de novo' cotranslational protein folding
GO:0003729; mRNA binding
GO:0005884; polysome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated dumbbell; db_xref=PMID:????????; date=20100802 ||| term=orthologous to S. cerevisiae YOR035C; date=19700101 ||| term=armadillo repeat protein; qualifier=inferred from context; date=19700101 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is myp2; qualifier=mRNA; db_xref=PMID:19098712; date=20090108 ||| term=target is myo51; qualifier=mRNA; db_xref=PMID:19098712; date=20090108 ||| term=target is myo2; qualifier=mRNA; db_xref=PMID:19098712; date=20090108 ||| term=target is myo1; qualifier=mRNA; db_xref=PMID:19098712; date=20090108 ||| term=target is myo52; qualifier=mRNA; db_xref=PMID:19098712; date=20090108" ; primary_name "rng3" ; product "UCS-domain protein Rng3" ;
chromosome3 GeneDB CDS 86370 88610 . - . mRNA SPCC613.04c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 88609 88637 . - . mRNA SPCC613.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.04c" ; systematic_id "SPCC613.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 88905 89557 . - . mRNA SPCC613.05c ; systematic_id "SPCC613.05c" ; colour "2" ; gene "rpl35 ||| SPCC613.05c" ; Alias "rpl35" ; db_xref "SPD:42/42F12" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL191W and YDL136W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl35" ; product "60S ribosomal protein L35" ;
chromosome3 GeneDB CDS 88905 89136 . - . mRNA SPCC613.05c ; colour "2" ;
chromosome3 GeneDB CDS 89421 89557 . - . mRNA SPCC613.05c ; colour "2" ;
chromosome3 GeneDB misc_feature 89137 89151 . - . misc_feature unknown_30 ; colour "6" ; note "ctaacttatttatag, splice branch and acceptor" ;
chromosome3 GeneDB intron 89137 89420 . - . intron SPCC613.05c ; systematic_id "SPCC613.05c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 89415 89420 . - . misc_feature unknown_31 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 89556 89570 . - . mRNA SPCC613.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.05c" ; systematic_id "SPCC613.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 89737 89779 . + . mRNA SPCC613.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.06" ; systematic_id "SPCC613.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 89780 90349 . + . mRNA SPCC613.06 ; systematic_id "SPCC613.06" ; colour "2" ; gene "rpl902 ||| rpl9-2 ||| SPCC613.06" ; Alias "rpl902" ; db_xref "SPD:06/06A09" ; synonym "rpl9-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL147C and YNL067W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl902" ; product "60S ribosomal protein L9" ;
chromosome3 GeneDB CDS 89780 90349 . + . mRNA SPCC613.06 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 90350 90417 . + . mRNA SPCC613.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.06" ; systematic_id "SPCC613.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 91663 91685 . + . mRNA SPCC613.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.07" ; systematic_id "SPCC613.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 91686 92723 . + . mRNA SPCC613.07 ; db_xref "SPD:43/43G01" ; systematic_id "SPCC613.07" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016074; snoRNA metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR040W; date=19700101 ||| term=zf-HIT; date=20080502 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC613.07" ; product "snoRNA biogenesis protein (predicted)" ;
chromosome3 GeneDB CDS 91686 92723 . + . mRNA SPCC613.07 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 92724 92872 . + . mRNA SPCC613.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.07" ; systematic_id "SPCC613.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 93017 94169 . + . mRNA SPCC613.08 ; db_xref "SPD:18/18C01" ; systematic_id "SPCC613.08" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006611; protein export from nucleus
GO:0000055; ribosomal large subunit export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human TOK1 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YDR361C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC613.08" ; product "CDK regulator, involved in ribosome export (predicted)" ;
chromosome3 GeneDB CDS 93017 93230 . + . mRNA SPCC613.08 ; colour "7" ;
chromosome3 GeneDB CDS 93285 93496 . + . mRNA SPCC613.08 ; colour "7" ;
chromosome3 GeneDB CDS 93618 94169 . + . mRNA SPCC613.08 ; colour "7" ;
chromosome3 GeneDB misc_feature 93231 93236 . + . misc_feature unknown_32 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 93268 93284 . + . misc_feature unknown_33 ; colour "6" ; note "ttaactttttatattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 93497 93502 . + . misc_feature unknown_34 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 93601 93617 . + . misc_feature unknown_35 ; colour "6" ; note "ctaacggtacttattag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 94170 94246 . + . mRNA SPCC613.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.08" ; systematic_id "SPCC613.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 94686 94730 . + . mRNA SPCC613.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.09" ; systematic_id "SPCC613.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 94731 96031 . + . mRNA SPCC613.09 ; systematic_id "SPCC613.09" ; colour "7" ; gene "sen54 ||| SPCC613.09" ; Alias "sen54" ; db_xref "SPD:22/22F01" ; GO "GO:0005741; mitochondrial outer membrane
GO:0000214; tRNA-intron endonuclease complex
GO:0000213; tRNA-intron endonuclease activity
GO:0000379; tRNA-type intron splice site recognition and cleavage" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL083C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sen54" ; product "tRNA-splicing endonuclease subunit Sen54 (predicted)" ;
chromosome3 GeneDB CDS 94731 94831 . + . mRNA SPCC613.09 ; colour "7" ;
chromosome3 GeneDB CDS 94909 95046 . + . mRNA SPCC613.09 ; colour "7" ;
chromosome3 GeneDB CDS 95116 96031 . + . mRNA SPCC613.09 ; colour "7" ;
chromosome3 GeneDB misc_feature 94832 94837 . + . misc_feature unknown_36 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 94888 94908 . + . misc_feature unknown_37 ; colour "6" ; note "ctaatttcattaaaataacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 95047 95052 . + . misc_feature unknown_38 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 95096 95115 . + . misc_feature unknown_39 ; colour "6" ; note "ctaacgtggatggcatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 96032 96225 . + . mRNA SPCC613.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.09" ; systematic_id "SPCC613.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 96647 96720 . + . mRNA SPCC613.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.10" ; systematic_id "SPCC613.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 96721 98001 . + . mRNA SPCC613.10 ; systematic_id "SPCC613.10" ; colour "7" ; gene "qcr2 ||| SPCC613.10" ; Alias "qcr2" ; db_xref "SPD:20/20E06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005198; structural molecule activity
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0008121; ubiquinol-cytochrome-c reductase activity" ; primary_name "qcr2" ; product "ubiquinol-cytochrome-c reductase complex core protein Qcr2 (predicted)" ; EC_number "1.10.2.2" ;
chromosome3 GeneDB CDS 96721 98001 . + . mRNA SPCC613.10 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 98002 98210 . + . mRNA SPCC613.10 ; ID "SPCC613.10" ; systematic_id "SPCC613.10" ; note "mRNA from AU007223" ;
chromosome3 GeneDB 3'-UTR 98575 98720 . - . mRNA SPCC613.11c ; ID "SPCC613.11c" ; systematic_id "SPCC613.11c" ; note "mRNA from AB054307" ;
chromosome3 GeneDB CDS_parts 98721 99485 . - . mRNA SPCC613.11c ; systematic_id "SPCC613.11c" ; colour "10" ; db_xref "SPD:09/09E01" ; Alias "meu23" ; synonym "B13958-2" ; GO "GO:0070263; external side of fungal-type cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=protein sequence feature, repeat containing; date=20100426 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20081212 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100104 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu23" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 2" ;
chromosome3 GeneDB CDS 98721 99485 . - . mRNA SPCC613.11c ; colour "10" ;
chromosome3 GeneDB 3'-UTR 99966 100254 . - . mRNA SPCC613.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.12c" ; systematic_id "SPCC613.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 100255 102171 . - . mRNA SPCC613.12c ; systematic_id "SPCC613.12c" ; colour "2" ; db_xref "SPD:26/26G02" ; Alias "raf1" ; synonym "dos1 ||| cmc1 ||| clr8" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16040243; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Rik1- associated factor; cv=name_description; date=20100126 ||| term=name description, Delocalization Of Swi6; cv=name_description; date=20100126 ||| term=name description, Cullin- associated Methyltransferase complex subunit; date=20100318" ; GO "GO:0043494; Rik1-E3 ubiquitin ligase complex
GO:0031934; mating-type region heterochromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0045132; meiotic chromosome segregation
GO:0051754; meiotic sister chromatid cohesion, centromeric
GO:0000070; mitotic sister chromatid segregation
GO:0051572; negative regulation of histone H3-K4 methylation
GO:0051574; positive regulation of histone H3-K9 methylation
GO:0034613; cellular protein localization
GO:0031494; regulation of mating type switching
GO:0031048; small RNA-mediated chromatin silencing
GO:0045141; telomere clustering
GO:0031618; nuclear centric heterochromatin
GO:0035391; maintenance of chromatin silencing at silent mating-type cassette" ; primary_name "raf1" ; product "Rik1-associated factor Raf1" ;
chromosome3 GeneDB CDS 100255 102171 . - . mRNA SPCC613.12c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 102170 102222 . - . mRNA SPCC613.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC613.12c" ; systematic_id "SPCC613.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 102493 102684 . - . mRNA SPCC330.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.01c" ; systematic_id "SPCC330.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 102685 105576 . - . mRNA SPCC330.01c ; systematic_id "SPCC330.01c" ; colour "2" ; gene "rhp16 ||| SPCC613.13c ||| SPCC330.01c ||| rad16" ; Alias "rhp16" ; db_xref "SPD:47/47D05" ; synonym "SPCC613.13c ||| rad16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8879272; date=19700101 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:8765419; date=20100730 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=genome organization, divergently orientated to functionally related gene; cv=genome_org; db_xref=PMID:10446227; date=20061027 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YBR114W; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0004003; ATP-dependent DNA helicase activity
GO:0006289; nucleotide-excision repair
GO:0004842; ubiquitin-protein ligase activity
GO:0005634; nucleus
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0000109; nucleotide-excision repair complex
GO:0006289; nucleotide-excision repair
GO:0005515; protein binding
GO:0034644; cellular response to UV
GO:0005524; ATP binding" ; primary_name "rhp16" ; product "Rad16 homolog Rhp16" ;
chromosome3 GeneDB CDS 102685 105576 . - . mRNA SPCC330.01c ; colour "2" ;
chromosome3 GeneDB misc_feature 103512 108799 . - . misc_feature unknown_40 ; note "nominal overlap with cosmid SPCC613, EM:AL031644 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 103512 108799 . + . misc_feature unknown_41 ; note "nominal overlap with cosmid SPCC330, EM:AL031603 S. pombe chromosome 3" ;
chromosome3 GeneDB 5'-UTR 105575 105601 . - . mRNA SPCC330.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.01c" ; systematic_id "SPCC330.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 105680 107419 . + . mRNA SPCC330.02 ; systematic_id "SPCC330.02" ; colour "2" ; gene "rhp7 ||| SPCC330.02 ||| SPCC613.14" ; Alias "rhp7" ; db_xref "SPD:35/35H08" ; synonym "SPCC613.14" ; GO "GO:0000109; nucleotide-excision repair complex
GO:0005515; protein binding
GO:0006289; nucleotide-excision repair
GO:0034644; cellular response to UV" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YJR052W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=genome organization, divergently orientated to functionally related gene; cv=genome_org; db_xref=PMID:10446227; date=20061027" ; primary_name "rhp7" ; product "Rad7 homolog Rhp7" ;
chromosome3 GeneDB CDS 105680 105736 . + . mRNA SPCC330.02 ; colour "2" ;
chromosome3 GeneDB CDS 105785 107419 . + . mRNA SPCC330.02 ; colour "2" ;
chromosome3 GeneDB misc_feature 105737 105742 . + . misc_feature unknown_42 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 105769 105784 . + . misc_feature unknown_43 ; colour "6" ; note "ctaatgcattattcag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 108005 108337 . - . mRNA SPCC330.19c ; db_xref "SPD:52/52B12" ; systematic_id "SPCC330.19c" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPCC330.19c" ; product "sequence orphan" ; note "added Sept 4 2002, confirmed by EST, val" ;
chromosome3 GeneDB CDS 108005 108257 . - . mRNA SPCC330.19c ; colour "8" ;
chromosome3 GeneDB CDS 108318 108337 . - . mRNA SPCC330.19c ; colour "8" ;
chromosome3 GeneDB misc_feature 108005 108337 . - . misc_feature unknown_44 ; note "see c330 for annotation" ;
chromosome3 GeneDB intron 108258 108317 . - . intron SPCC330.19c ; systematic_id "SPCC330.19c" ; note "confirmed by EST" ;
chromosome3 GeneDB LTR 108555 108863 . + . LTR unknown_45 ; colour "4" ; note "degraded tf2 type LTR ||| LTR" ;
chromosome3 GeneDB 3'-UTR 109866 109870 . - . mRNA SPCC330.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.03c" ; systematic_id "SPCC330.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 109871 110502 . - . mRNA SPCC330.03c ; db_xref "SPD:42/42E11" ; systematic_id "SPCC330.03c" ; colour "7" ; GO "GO:0020037; heme binding
GO:0042168; heme metabolism
GO:0003958; NADPH-hemoprotein reductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR073C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; gene "SPCC330.03c" ; product "NADPH-hemoprotein reductase (predicted)" ;
chromosome3 GeneDB CDS 109871 109938 . - . mRNA SPCC330.03c ; colour "7" ;
chromosome3 GeneDB CDS 109994 110171 . - . mRNA SPCC330.03c ; colour "7" ;
chromosome3 GeneDB CDS 110311 110502 . - . mRNA SPCC330.03c ; colour "7" ;
chromosome3 GeneDB misc_feature 109939 109953 . - . misc_feature unknown_46 ; colour "6" ; note "ttaacaactatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 109988 109993 . - . misc_feature unknown_47 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 110172 110189 . - . misc_feature unknown_48 ; colour "6" ; note "ctaacaccgatgctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 110305 110310 . - . misc_feature unknown_49 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 110501 110525 . - . mRNA SPCC330.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.03c" ; systematic_id "SPCC330.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 110579 111131 . - . misc_feature unknown_50 ; note "c330.C.cand.9 score = 8.82" ;
chromosome3 GeneDB LTR 111397 111560 . - . LTR unknown_51 ; note "LTR-fragment" ;
chromosome3 GeneDB CDS_parts 112305 113378 . - . mRNA SPCC330.04c ; systematic_id "SPCC330.04c" ; colour "10" ; gene "SPCC330.04c ||| mug135" ; note "biased repeat containing protein - 6 copies of 'WKKAREEDKAE' repeat and 6 copies of a smaller 'WRNSMDE' repeat" ; Alias "mug135" ; db_xref "SPD:16/16F01" ; GO "GO:0070263; external side of fungal-type cell wall" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20081212 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100104" ; primary_name "mug135" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 3" ;
chromosome3 GeneDB CDS 112305 113378 . - . mRNA SPCC330.04c ; colour "10" ;
chromosome3 GeneDB tRNA 113716 113786 . - . tRNA SPCTRNAGLY.10 ; systematic_id "SPCTRNAGLY.10" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033454; GCC codon-amino acid adaptor activity" ; gene "SPCTRNAGLY.10" ; product "tRNA Glycine" ; note "tRNA Gly anticodon GCC" ;
chromosome3 GeneDB LTR 114382 114730 . + . LTR unknown_52 ; colour "4" ; note "tf2 type LTR" ;
chromosome3 GeneDB CDS_parts 114921 115256 . + . mRNA SPCC330.20 ; Alias "tam14" ; systematic_id "SPCC330.20" ; controlled_curation "term=conserved in Fungi; date=20100420 ||| term=conserved in Eukaryotes only; date=20100420 ||| term=no apparent S. cerevisiae ortholog; date=20100420 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; colour "10" ; primary_name "tam14" ; gene "SPCC330.20" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 114921 114926 . + . mRNA SPCC330.20 ; colour "10" ;
chromosome3 GeneDB CDS 114984 115116 . + . mRNA SPCC330.20 ; colour "10" ;
chromosome3 GeneDB CDS 115183 115256 . + . mRNA SPCC330.20 ; colour "10" ;
chromosome3 GeneDB intron 115117 115182 . + . intron unknown_53 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome3 GeneDB misc_RNA 115394 115476 . - . misc_RNA SPNCRNA.129 ; db_xref "EMBL:AU014447" ; systematic_id "SPNCRNA.129" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU014447; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU014447; date=20050412" ; gene "SPNCRNA.129" ; product "non-coding RNA (predicted)" ; note "from AU014447 spc09864; RNA not associated with an ORF" ;
chromosome3 GeneDB 3'-UTR 115589 115780 . - . mRNA SPCC330.05c ; ID "SPCC330.05c" ; systematic_id "SPCC330.05c" ; note "mRNA from S60039" ;
chromosome3 GeneDB CDS_parts 115781 116575 . - . mRNA SPCC330.05c ; systematic_id "SPCC330.05c" ; colour "2" ; gene "ura4 ||| SPCC330.05c" ; Alias "ura4" ; db_xref "SPD:10/10A08" ; controlled_curation "term=target of SAPK pathway; db_xref=PMID:12521309; date=19700101 ||| term=gene expression, expression induced by glucose; db_xref=PMID:12521309; date=19700101 ||| term=orthologous to S. cerevisiae YEL021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004590; orotidine-5'-phosphate decarboxylase activity
GO:0006207; 'de novo' pyrimidine base biosynthesis" ; primary_name "ura4" ; product "orotidine 5'-phosphate decarboxylase Ura4" ; EC_number "4.1.1.23" ;
chromosome3 GeneDB CDS 115781 116575 . - . mRNA SPCC330.05c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 116574 116631 . - . mRNA SPCC330.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.05c" ; systematic_id "SPCC330.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 116929 117576 . - . mRNA SPCC330.21 ; db_xref "PMID:21270388" ; systematic_id "SPCC330.21" ;
chromosome3 GeneDB CDS_parts 117578 117847 . - . mRNA SPCC330.21 ; Alias "new25" ; systematic_id "SPCC330.21" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "new25" ; gene "SPCC330.21" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 117578 117847 . - . mRNA SPCC330.21 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 118222 118422 . - . mRNA SPCC330.06c ; ID "SPCC330.06c" ; systematic_id "SPCC330.06c" ; note "mRNA from AU010632" ;
chromosome3 GeneDB CDS_parts 118423 118893 . - . mRNA SPCC330.06c ; db_xref "SPD:04/04C12" ; systematic_id "SPCC330.06c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0008379; thioredoxin peroxidase activity
GO:0045454; cell redox homeostasis
GO:0034599; cellular response to oxidative stress
GO:0033554; cellular response to stress
GO:0019430; removal of superoxide radicals
GO:0042744; hydrogen peroxide catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR109W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111" ; gene "SPCC330.06c" ; product "thioredoxin peroxidase (predicted)" ;
chromosome3 GeneDB CDS 118423 118893 . - . mRNA SPCC330.06c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 118894 119002 . - . mRNA SPCC330.06c ; ID "SPCC330.06c" ; systematic_id "SPCC330.06c" ; note "mRNA from SPAJ2536" ;
chromosome3 GeneDB misc_RNA 120113 120204 . + . misc_RNA SPNCRNA.455 ; db_xref "PMID:18488015" ; synonym "SPNG2041" ; systematic_id "SPNCRNA.455" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB rep_origin 120294 120836 . + . rep_origin unknown_54 ; colour "3" ; label "ars3003" ; note "ars3003 ranks second (behind ars3002 and ahead of ars3004) in frequency of usage at the ura4 origin (MEDLINE 93178199) (MEDLINE 95163397)" ;
chromosome3 GeneDB 3'-UTR 120575 120912 . - . mRNA SPCC330.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.07c" ; systematic_id "SPCC330.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 120913 122415 . - . mRNA SPCC330.07c ; db_xref "SPD:24/24D04" ; systematic_id "SPCC330.07c" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0006810; transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPCC613.02 and SPCC613.01 and SPCC757.11C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC330.07c" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB CDS 120913 122415 . - . mRNA SPCC330.07c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 122416 122896 . - . mRNA SPCC330.07c ; ID "SPCC330.07c" ; systematic_id "SPCC330.07c" ; note "mRNA from AU008976" ;
chromosome3 GeneDB rep_origin 123056 124035 . + . rep_origin unknown_55 ; colour "3" ; label "ars3002" ; note "ars3003 ranks second (behind ars3002 and ahead of ars3004) in frequency of usage at the ura4 origin (MEDLINE 93178199) (MEDLINE 95163397)" ;
chromosome3 GeneDB conflict 123340 123340 . + . conflict unknown_56 ; citation "[1]" ; note "indeterminate no of bases in polyA tract" ;
chromosome3 GeneDB rep_origin 123636 125101 . + . rep_origin unknown_57 ; colour "3" ; label "ars3004" ; note "ars3004; autonomously replicating sequence" ;
chromosome3 GeneDB 5'-UTR 124276 124562 . + . mRNA SPCC330.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.08" ; systematic_id "SPCC330.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 124563 125978 . + . mRNA SPCC330.08 ; systematic_id "SPCC330.08" ; colour "2" ; gene "alg11 ||| gmd3 ||| SPCC330.08" ; Alias "alg11" ; db_xref "SPD:44/44E07" ; synonym "gmd3" ; GO "GO:0000026; alpha-1,2-mannosyltransferase activity
GO:0006486; protein amino acid glycosylation
GO:0005783; endoplasmic reticulum
GO:0006487; protein amino acid N-linked glycosylation
GO:0000136; mannosyltransferase complex subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "alg11" ; product "alpha-1,2-mannosyltransferase Alg11" ; EC_number "2.4.1.-" ;
chromosome3 GeneDB CDS 124563 125978 . + . mRNA SPCC330.08 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 125979 127050 . + . mRNA SPCC330.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.08" ; systematic_id "SPCC330.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 127245 127293 . + . mRNA SPCC330.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.09" ; systematic_id "SPCC330.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 127294 129198 . + . mRNA SPCC330.09 ; db_xref "SPD:46/46B05" ; systematic_id "SPCC330.09" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0042274; ribosome small subunit biogenesis
GO:0030686; 90S preribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR145W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC330.09" ; product "rRNA processing protein Enp2 (predicted)" ;
chromosome3 GeneDB CDS 127294 129198 . + . mRNA SPCC330.09 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 129199 129392 . + . mRNA SPCC330.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.09" ; systematic_id "SPCC330.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 129844 131013 . + . mRNA SPCC330.10 ; systematic_id "SPCC330.10" ; colour "2" ; gene "pcm1 ||| SPCC330.10" ; Alias "pcm1" ; db_xref "SPD:43/43H08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR236C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0070693; P-TEFb-cap methyltransferase complex
GO:0005634; nucleus
GO:0004482; mRNA (guanine-N7-)-methyltransferase activity
GO:0001510; RNA methylation
GO:0006370; mRNA capping" ; primary_name "pcm1" ; product "P-TEFb-cap methyltransferase Pcm1" ; EC_number "2.1.1.56" ;
chromosome3 GeneDB CDS 129844 131013 . + . mRNA SPCC330.10 ; colour "2" ;
chromosome3 GeneDB CDS_parts 131517 135560 . + . mRNA SPCC330.11 ; systematic_id "SPCC330.11" ; colour "2" ; gene "btb1 ||| SPCC330.11" ; Alias "btb1" ; db_xref "SPD:30/30E11" ; GO "GO:0000151; ubiquitin ligase complex
GO:0005515; protein binding
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=regulator of condensation (RCC1) domains; qualifier=inferred from context; date=20060825 ||| term=BTB/POZ domain; date=19700101 ||| term=ankyrin repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "btb1" ; product "BTB/POZ domain protein Btb1" ;
chromosome3 GeneDB CDS 131517 135560 . + . mRNA SPCC330.11 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 135724 135956 . - . mRNA SPCC330.12c ; ID "SPCC330.12c" ; systematic_id "SPCC330.12c" ; note "mRNA from AU009197" ;
chromosome3 GeneDB CDS_parts 135957 136499 . - . mRNA SPCC330.12c ; systematic_id "SPCC330.12c" ; colour "7" ; gene "sdh3 ||| SPCC330.12c" ; Alias "sdh3" ; db_xref "SPD:05/05E06" ; GO "GO:0005749; respiratory chain complex II (sensu Eukaryota)
GO:0008177; succinate dehydrogenase (ubiquinone) activity
GO:0006121; mitochondrial electron transport, succinate to ubiquinone
GO:0006105; succinate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL141W and YMR118C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, pheochromocytoma; date=20091120 ||| term=human SDHC ortholog; date=20091120 ||| term=disease associated, paraganglioma; date=20091120 ||| term=disease associated, cancer; date=20100217" ; primary_name "sdh3" ; product "succinate dehydrogenase (ubiquinone) cytochrome b subunit (predicted)" ;
chromosome3 GeneDB CDS 135957 136499 . - . mRNA SPCC330.12c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 136498 136662 . - . mRNA SPCC330.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.12c" ; systematic_id "SPCC330.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 136807 137020 . + . mRNA SPCC330.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.13" ; systematic_id "SPCC330.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 137021 137749 . + . mRNA SPCC330.13 ; systematic_id "SPCC330.13" ; colour "7" ; gene "rpc37 ||| SPCC330.13" ; Alias "rpc37" ; db_xref "SPD:08/08G03" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0006383; transcription from RNA polymerase III promoter
GO:0005666; DNA-directed RNA polymerase III complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR025W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpc37" ; product "DNA-directed RNA polymerase III complex subunit Rpc37 (predicted)" ;
chromosome3 GeneDB CDS 137021 137749 . + . mRNA SPCC330.13 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 138083 138095 . - . mRNA SPCC330.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.14c" ; systematic_id "SPCC330.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 138096 138545 . - . mRNA SPCC330.14c ; systematic_id "SPCC330.14c" ; colour "7" ; gene "rpl2402 ||| rpl24-2 ||| SPCC330.14c" ; Alias "rpl2402" ; db_xref "SPD:03/03H08" ; synonym "rpl24-2" ; GO "GO:0006412; protein biosynthesis
GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu the Eukaryota research community)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL031C and YGR148C and YLR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl2402" ; product "60S ribosomal protein L24 (predicted)" ;
chromosome3 GeneDB CDS 138096 138545 . - . mRNA SPCC330.14c ; colour "7" ;
chromosome3 GeneDB misc_feature 138514 138545 . - . misc_feature unknown_58 ; note "rpl24-2 see c330 for full length CDS" ;
chromosome3 GeneDB misc_feature 138514 146200 . - . misc_feature unknown_59 ; note "nominal overlap with cosmid SPCC330 and SPCC320" ;
chromosome3 GeneDB 5'-UTR 138544 138575 . - . mRNA SPCC330.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC330.14c" ; systematic_id "SPCC330.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 139017 139221 . - . mRNA SPCC320.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.14" ; systematic_id "SPCC320.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 139222 140193 . - . mRNA SPCC320.14 ; systematic_id "SPCC320.14" ; colour "7" ; gene "SPCC330.15c ||| SPCC320.14" ; note "annotations dervived from PMID:12951240, previously annotated as threonine dehydratase" ; Alias "SPCC330.15c" ; db_xref "KEGG:MAP00260; ||| SPD:13/13H05" ; synonym "SPCC330.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL218C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006567; threonine catabolism
GO:0030848; threo-3-hydroxyaspartate ammonia-lyase activity" ; primary_name "SPCC330.15c" ; product "threo-3-hydroxyaspartate ammonia-lyase (predicted)" ; EC_number "4.3.1.16" ;
chromosome3 GeneDB CDS 139222 140193 . - . mRNA SPCC320.14 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 140192 140447 . - . mRNA SPCC320.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.14" ; systematic_id "SPCC320.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 140967 141038 . + . tRNA SPCTRNAGLU.09 ; systematic_id "SPCTRNAGLU.09" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033418; CTC codon-amino acid adaptor activity" ; gene "SPCTRNAGLU.09" ; product "tRNA Glutamic acid" ; note "tRNA Glu anticodon CTC ||| tRNA Glu anticodon CTC, Cove score 74.15" ;
chromosome3 GeneDB misc_RNA 141220 141422 . + . misc_RNA SPNCRNA.456 ; db_xref "PMID:18488015" ; synonym "SPNG2045" ; systematic_id "SPNCRNA.456" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand ||| possible UTR for ark1" ;
chromosome3 GeneDB misc_RNA 141429 141634 . - . misc_RNA SPNCRNA.457 ; db_xref "PMID:18488015" ; synonym "SPNG2046" ; systematic_id "SPNCRNA.457" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB 5'-UTR 141657 141661 . + . mRNA SPCC320.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.13c" ; systematic_id "SPCC320.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 141662 142729 . + . mRNA SPCC320.13c ; systematic_id "SPCC320.13c" ; colour "2" ; obsolete_name "SPCC320.12c" ; db_xref "SPD:18/18C05" ; Alias "ark1" ; synonym "aim1 ||| SPCC330.16" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11792803; date=19700101 ||| term=phenotype, sensitive to latrunculin A; allele=ark1-T7; cv=phenotype; db_xref=PMID:19570910; date=20090707 ||| term=phenotype, cut; db_xref=PMID:11950927; date=20100705 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11792803; date=20100709 ||| term=phenotype, chromosome condensation defects; qualifier=deletion; db_xref=PMID:11792803; date=20100709 ||| term=phenotype, spindle defects; qualifier=deletion|during_mitosis; db_xref=PMID:11792803; date=20100709 ||| term=phenotype, kinetochore defects; qualifier=deletion; db_xref=PMID:11792803; date=20100709 ||| term=disease associated, aneuploidy; date=20060920 ||| term=orthologous to S. cerevisiae YPL209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:12676091; date=20030801 ||| term=localization, location of Cdc14 phosphatase, Clp1 to contractile ring; db_xref=PMID:19570910; date=20090707 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=target is Hht1; qualifier=phosphorylates; db_xref=PMID:11792803; date=20100820 ||| term=target is Hht2; qualifier=phosphorylates; db_xref=PMID:11792803; date=20100820 ||| term=target is Hht3; qualifier=phosphorylates; db_xref=PMID:11792803; date=20100820" ; GO "GO:0032133; chromosome passenger complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005634; nucleus
GO:0051233; spindle midzone
GO:0043987; histone H3 S10 phosphorylation
GO:0005515; protein binding
GO:0005515; protein binding
; protein binding
; protein binding
; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0051315; attachment of spindle microtubules to kinetochore during mitosis
GO:0030261; chromosome condensation
GO:0034503; condensin localization to nucleolar rDNA repeats
GO:0033205; cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0007094; mitotic spindle checkpoint
GO:0034501; protein localization to kinetochore
GO:0031134; sister chromatid biorientation" ; primary_name "ark1" ; product "aurora-B kinase Ark1" ;
chromosome3 GeneDB CDS 141662 142729 . + . mRNA SPCC320.13c ; colour "2" ;
chromosome3 GeneDB misc_feature 141662 141664 . + . misc_feature unknown_60 ; note "initiator methionine, confirmed PMID 12676091" ;
chromosome3 GeneDB 3'-UTR 142730 142975 . + . mRNA SPCC320.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.13c" ; systematic_id "SPCC320.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 142975 143219 . - . mRNA SPCC320.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.12" ; systematic_id "SPCC320.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 143220 143843 . - . mRNA SPCC320.12 ; systematic_id "SPCC320.12" ; colour "7" ; gene "SPCC330.17c ||| SPCC320.12 ||| atp23" ; Alias "atp23" ; db_xref "SPD:07/07A12" ; synonym "SPCC330.17c" ; GO "GO:0004222; metalloendopeptidase activity
GO:0033615; mitochondrial proton-transporting ATP synthase complex assembly
GO:0005743; mitochondrial inner membrane
GO:0034982; mitochondrial protein processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp23" ; product "mitochondrial inner membrane peptidase Atp23 (predicted)" ;
chromosome3 GeneDB CDS 143220 143227 . - . mRNA SPCC320.12 ; colour "7" ;
chromosome3 GeneDB CDS 143294 143843 . - . mRNA SPCC320.12 ; colour "7" ;
chromosome3 GeneDB misc_feature 143228 143251 . - . misc_feature unknown_61 ; colour "6" ; note "ctaactattcattctttcgtctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 143288 143293 . - . misc_feature unknown_62 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 143842 144130 . - . mRNA SPCC320.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.12" ; systematic_id "SPCC320.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 144350 144379 . + . mRNA SPCC320.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.11c" ; systematic_id "SPCC320.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 144380 145237 . + . mRNA SPCC320.11c ; systematic_id "SPCC320.11c" ; colour "7" ; gene "SPCC330.18 ||| SPCC320.11c" ; Alias "SPCC330.18" ; db_xref "SPD:11/11D07" ; synonym "SPCC330.18" ; GO "GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PUA domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL211W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPCC330.18" ; product "RNA-binding protein involved in ribosome biogenesis (predicted)" ;
chromosome3 GeneDB CDS 144380 144435 . + . mRNA SPCC320.11c ; colour "7" ;
chromosome3 GeneDB CDS 144589 144675 . + . mRNA SPCC320.11c ; colour "7" ;
chromosome3 GeneDB CDS 144838 145237 . + . mRNA SPCC320.11c ; colour "7" ;
chromosome3 GeneDB misc_feature 144436 144441 . + . misc_feature unknown_63 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 144436 144588 . + . intron SPCC320.11c ; systematic_id "SPCC320.11c" ; note "confirmed, by homology" ;
chromosome3 GeneDB misc_feature 144572 144588 . + . misc_feature unknown_64 ; colour "6" ; note "ctgactagtaaaactag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 144676 144681 . + . misc_feature unknown_65 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 144823 144837 . + . misc_feature unknown_66 ; colour "6" ; note "ttaacatacttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 145238 145562 . + . misc_feature unknown_67 ; note "mRNA from AU006574" ;
chromosome3 GeneDB 3'-UTR 145238 145562 . + . mRNA SPCC320.11c ; ID "SPCC320.11c" ; systematic_id "SPCC320.11c" ; note "mRNA from AU006574" ;
chromosome3 GeneDB 3'-UTR 146165 146209 . - . mRNA SPCC320.10 ; ID "SPCC320.10" ; systematic_id "SPCC320.10" ; note "mRNA from AU008365" ;
chromosome3 GeneDB CDS_parts 146210 148128 . - . mRNA SPCC320.10 ; systematic_id "SPCC320.10" ; colour "7" ; gene "srp72 ||| SPCC320.10" ; Alias "srp72" ; db_xref "SPD:26/26G04" ; GO "GO:0006614; SRP-dependent cotranslational protein targeting to membrane
GO:0005048; signal sequence binding
GO:0005786; signal recognition particle (sensu Eukaryota)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL210C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "srp72" ; product "signal recognition particle subunit Srp72 (predicted)" ;
chromosome3 GeneDB CDS 146210 147251 . - . mRNA SPCC320.10 ; colour "7" ;
chromosome3 GeneDB CDS 147298 147617 . - . mRNA SPCC320.10 ; colour "7" ;
chromosome3 GeneDB CDS 147669 147731 . - . mRNA SPCC320.10 ; colour "7" ;
chromosome3 GeneDB CDS 147868 148128 . - . mRNA SPCC320.10 ; colour "7" ;
chromosome3 GeneDB misc_feature 147252 147268 . - . misc_feature unknown_68 ; colour "6" ; note "ctaattttgataaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 147292 147297 . - . misc_feature unknown_69 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 147618 147632 . - . misc_feature unknown_70 ; colour "6" ; note "ctaacttttaactag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 147663 147668 . - . misc_feature unknown_71 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 147732 147748 . - . misc_feature unknown_72 ; colour "6" ; note "ctaacaacttattgaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 147862 147867 . - . misc_feature unknown_73 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 148127 148149 . - . mRNA SPCC320.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.10" ; systematic_id "SPCC320.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 149153 150472 . - . mRNA SPCC320.09 ; systematic_id "SPCC320.09" ; colour "7" ; gene "hem15 ||| SPCC320.09" ; Alias "hem15" ; db_xref "SPD:23/23A04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060725 ||| term=orthologous to S. cerevisiae YOR176W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006783; heme biosynthesis
GO:0004325; ferrochelatase activity
GO:0051186; cofactor metabolic process" ; primary_name "hem15" ; product "ferrochelatase (predicted)" ; EC_number "4.99.1.1" ; reserved_name "hem15" ;
chromosome3 GeneDB CDS 149153 150163 . - . mRNA SPCC320.09 ; colour "7" ;
chromosome3 GeneDB CDS 150279 150323 . - . mRNA SPCC320.09 ; colour "7" ;
chromosome3 GeneDB CDS 150374 150472 . - . mRNA SPCC320.09 ; colour "7" ;
chromosome3 GeneDB misc_feature 150164 150176 . - . misc_feature unknown_74 ; colour "6" ; note "ctaatgttttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 150273 150278 . - . misc_feature unknown_75 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 150324 150340 . - . misc_feature unknown_76 ; colour "6" ; note "ctaacagaggtgtgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 150368 150373 . - . misc_feature unknown_77 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 151093 151306 . - . mRNA SPCC320.08 ; ID "SPCC320.08" ; systematic_id "SPCC320.08" ; note "mRNA from AU009770" ;
chromosome3 GeneDB CDS_parts 151307 152824 . - . mRNA SPCC320.08 ; db_xref "SPD:24/24F05" ; systematic_id "SPCC320.08" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC320.08" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB CDS 151307 152824 . - . mRNA SPCC320.08 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 152825 152877 . - . mRNA SPCC320.08 ; ID "SPCC320.08" ; systematic_id "SPCC320.08" ; note "mRNA from AU013350" ;
chromosome3 GeneDB CDS_parts 155906 158191 . + . mRNA SPCC320.07c ; systematic_id "SPCC320.07c" ; colour "2" ; gene "mde7 ||| SPCC320.07c" ; Alias "mde7" ; db_xref "SPD:46/46G08" ; GO "GO:0003723; RNA binding
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YNL197C and YDL224C; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mde7" ; product "RNA-binding protein Mde7" ;
chromosome3 GeneDB CDS 155906 158191 . + . mRNA SPCC320.07c ; colour "2" ;
chromosome3 GeneDB CDS_parts 158577 159503 . - . mRNA SPCC320.06 ; db_xref "SPD:12/12H12" ; systematic_id "SPCC320.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20081110 ||| term=species distribution, conserved in Fungi; date=20090410 ||| term=species distribution, conserved in Fungi only; date=20090410" ; colour "10" ; gene "SPCC320.06" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 158577 159193 . - . mRNA SPCC320.06 ; colour "10" ;
chromosome3 GeneDB CDS 159251 159503 . - . mRNA SPCC320.06 ; colour "10" ;
chromosome3 GeneDB misc_feature 159194 159210 . - . misc_feature unknown_78 ; colour "6" ; note "ctaatatcgactctcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 159245 159250 . - . misc_feature unknown_79 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 159855 159992 . - . mRNA SPCC320.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.05" ; systematic_id "SPCC320.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 159993 161996 . - . mRNA SPCC320.05 ; db_xref "SPD:27/27D07" ; systematic_id "SPCC320.05" ; colour "7" ; GO "GO:0015116; sulfate transmembrane transporter activity
GO:0008272; sulfate transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC320.05" ; product "sulphate transporter (predicted)" ;
chromosome3 GeneDB CDS 159993 161996 . - . mRNA SPCC320.05 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 161995 162280 . - . mRNA SPCC320.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.05" ; systematic_id "SPCC320.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 163074 165561 . + . mRNA SPCC320.04c ; db_xref "SPD:29/29A01" ; systematic_id "SPCC320.04c" ; controlled_curation "term=EF hand; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YAL048C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005741; mitochondrial outer membrane
GO:0016192; vesicle-mediated transport
GO:0003924; GTPase activity
GO:0007005; mitochondrion organization and biogenesis
GO:0005525; GTP binding
GO:0005509; calcium ion binding
GO:0007264; small GTPase mediated signal transduction" ; gene "SPCC320.04c" ; product "GTPase Gem1 (predicted)" ;
chromosome3 GeneDB CDS 163074 163175 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 163219 163294 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 163357 163493 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 163541 163696 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 163754 163819 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 163864 163906 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 163959 164291 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 164338 164726 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 164783 164884 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 164931 165059 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 165104 165178 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 165229 165336 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB CDS 165385 165561 . + . mRNA SPCC320.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 163176 163181 . + . misc_feature unknown_80 ; colour "6" ; note "gtagct, splice donor sequence" ;
chromosome3 GeneDB misc_feature 163207 163218 . + . misc_feature unknown_81 ; colour "6" ; note "ctaatgcgctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 163295 163300 . + . misc_feature unknown_82 ; colour "6" ; note "gtgaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 163338 163356 . + . misc_feature unknown_83 ; colour "6" ; note "ctaatatgacgacgtgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 163494 163499 . + . misc_feature unknown_84 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 163527 163540 . + . misc_feature unknown_85 ; colour "6" ; note "ctaatataattgag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 163697 163702 . + . misc_feature unknown_86 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 163740 163753 . + . misc_feature unknown_87 ; colour "6" ; note "ctaacaataaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 163820 163825 . + . misc_feature unknown_88 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 163848 163863 . + . misc_feature unknown_89 ; colour "6" ; note "ctaataatcttactag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 163907 163912 . + . misc_feature unknown_90 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 163947 163958 . + . misc_feature unknown_91 ; colour "6" ; note "ctaactagccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 164292 164297 . + . misc_feature unknown_92 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 164318 164337 . + . misc_feature unknown_93 ; colour "6" ; note "ttaatgtaaaatgcaattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 164727 164732 . + . misc_feature unknown_94 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 164763 164782 . + . misc_feature unknown_95 ; colour "6" ; note "ctaacttaacattcatctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 164885 164890 . + . misc_feature unknown_96 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 164912 164930 . + . misc_feature unknown_97 ; colour "6" ; note "ttaaccttttttgtcccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 165060 165065 . + . misc_feature unknown_98 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 165085 165103 . + . misc_feature unknown_99 ; colour "6" ; note "ctaatctgttctctcttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 165179 165184 . + . misc_feature unknown_100 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 165210 165228 . + . misc_feature unknown_101 ; colour "6" ; note "ttaacaagttatgtcgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 165337 165342 . + . misc_feature unknown_102 ; colour "6" ; note "gtgagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 165367 165384 . + . misc_feature unknown_103 ; colour "6" ; note "ttaacaaatcatttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 165562 165664 . + . mRNA SPCC320.04c ; ID "SPCC320.04c" ; systematic_id "SPCC320.04c" ; note "mRNA from AU012111" ;
chromosome3 GeneDB 3'-UTR 165855 165921 . - . mRNA SPCC320.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.03" ; systematic_id "SPCC320.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 165922 168525 . - . mRNA SPCC320.03 ; db_xref "SPD:38/38E12" ; systematic_id "SPCC320.03" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YBR033W and YKL038W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC320.03" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB CDS 165922 168525 . - . mRNA SPCC320.03 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 168524 170750 . - . mRNA SPCC320.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC320.03" ; systematic_id "SPCC320.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 170771 173539 . + . misc_RNA SPNCRNA.458 ; db_xref "PMID:18488015" ; synonym "SPNG2054" ; systematic_id "SPNCRNA.458" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 173942 174182 . + . mRNA SPCC1235.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.01" ; systematic_id "SPCC1235.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 174116 176159 . + . misc_feature unknown_104 ; colour "75 75 255" ; score "72" ; note "none" ;
chromosome3 GeneDB CDS_parts 174183 176159 . + . mRNA SPCC1235.01 ; systematic_id "SPCC1235.01" ; colour "8" ; gene "SPCC320.02c ||| SPCC1235.01" ; note "~37 copies of a 7-10 repeat consensus 'PMEEITTMTI' and a S/N rich C terminal region" ; Alias "SPCC320.02c" ; db_xref "SPD:27/27C03" ; synonym "SPCC320.02c" ; GO "GO:0070263; external side of fungal-type cell wall" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090410 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20090410" ; primary_name "SPCC320.02c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 174183 176159 . + . mRNA SPCC1235.01 ; colour "8" ;
chromosome3 GeneDB misc_feature 175584 178518 . + . misc_feature unknown_105 ; note "nominal overlap with cosmid SPCC1235 and cosmid SPCC320" ;
chromosome3 GeneDB 3'-UTR 176160 176360 . + . mRNA SPCC1235.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.01" ; systematic_id "SPCC1235.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 176747 176956 . + . mRNA SPCC1235.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.02" ; systematic_id "SPCC1235.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 176957 178048 . + . mRNA SPCC1235.02 ; systematic_id "SPCC1235.02" ; colour "2" ; gene "bio2 ||| SPCC320.01c ||| SPCC1235.02" ; note "vitamin metabolic process hardwired for analysis, temporary" ; Alias "bio2" ; db_xref "SPD:17/17B04" ; synonym "SPCC320.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR286C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004076; biotin synthase activity
GO:0009102; biotin biosynthesis
GO:0005739; mitochondrion
GO:0006766; vitamin metabolic process" ; primary_name "bio2" ; product "biotin synthase" ; EC_number "2.8.1.6" ;
chromosome3 GeneDB CDS 176957 178048 . + . mRNA SPCC1235.02 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 178049 178673 . + . mRNA SPCC1235.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.02" ; systematic_id "SPCC1235.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 179113 179386 . + . mRNA SPCC1235.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.03" ; systematic_id "SPCC1235.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 179387 180586 . + . mRNA SPCC1235.03 ; db_xref "SPD:19/19B12" ; systematic_id "SPCC1235.03" ; colour "10" ; GO "GO:0043130; ubiquitin binding
GO:0006281; DNA repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL090W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=CUE domain protein; qualifier=inferred from context; date=20081124" ; gene "SPCC1235.03" ; product "SMR domain protein, possibly involved in DNA repair" ;
chromosome3 GeneDB CDS 179387 180586 . + . mRNA SPCC1235.03 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 180587 180813 . + . mRNA SPCC1235.03 ; ID "SPCC1235.03" ; systematic_id "SPCC1235.03" ; note "mRNA from SPD171" ;
chromosome3 GeneDB 3'-UTR 180815 181067 . - . mRNA SPCC1235.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.04c" ; systematic_id "SPCC1235.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 181068 181966 . - . mRNA SPCC1235.04c ; db_xref "SPD:12/12C09" ; systematic_id "SPCC1235.04c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL045C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0046444; FMN metabolism
GO:0006747; FAD biosynthesis
GO:0003919; FMN adenylyltransferase activity
GO:0005737; cytoplasm" ; gene "SPCC1235.04c" ; product "FAD synthetase (predicted)" ; EC_number "2.7.7.2" ;
chromosome3 GeneDB CDS 181068 181319 . - . mRNA SPCC1235.04c ; colour "7" ;
chromosome3 GeneDB CDS 181368 181776 . - . mRNA SPCC1235.04c ; colour "7" ;
chromosome3 GeneDB CDS 181830 181966 . - . mRNA SPCC1235.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 181320 181330 . - . misc_feature unknown_106 ; colour "6" ; note "ctaaacattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 181362 181367 . - . misc_feature unknown_107 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 181777 181793 . - . misc_feature unknown_108 ; colour "6" ; note "ctaacgtttattacaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 181824 181829 . - . misc_feature unknown_109 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 181965 182136 . - . mRNA SPCC1235.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.04c" ; systematic_id "SPCC1235.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 182768 183022 . - . mRNA SPCC1235.05c ; ID "SPCC1235.05c" ; systematic_id "SPCC1235.05c" ; note "mRNA from AU013698" ;
chromosome3 GeneDB CDS_parts 183023 186877 . - . mRNA SPCC1235.05c ; systematic_id "SPCC1235.05c" ; colour "7" ; gene "SPCC1235.05c ||| fft2" ; Alias "fft2" ; db_xref "SPD:39/39D02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YAL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016585; chromatin remodeling complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0004003; ATP-dependent DNA helicase activity
GO:0006338; chromatin remodeling
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0000790; nuclear chromatin" ; primary_name "fft2" ; product "fun thirty related protein Fft2 (predicted)" ; reserved_name "fft2" ;
chromosome3 GeneDB CDS 183023 186877 . - . mRNA SPCC1235.05c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 186876 186920 . - . mRNA SPCC1235.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.05c" ; systematic_id "SPCC1235.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 187086 187449 . + . LTR unknown_110 ; colour "4" ; note "tf1-type LTR" ;
chromosome3 GeneDB CDS_parts 188100 188592 . + . mRNA SPCC1235.16 ; Alias "vma21" ; systematic_id "SPCC1235.16" ; colour "7" ; controlled_curation "term=orthologous to S. cerevisiae YGR105W; date=20090417 ||| term=species distribution, conserved in Vertebrates; date=20090417 ||| term=species distribution, conserved in Metazoa; date=20090417 ||| term=species distribution, conserved in Eukaryotes; date=20090417 ||| term=species distribution, conserved in Eukaryotes only; date=20090417 ||| term=warning, new gene; cv=warning; date=20090417 ||| term=disease associated, X-linked myopathy with excessive autophagy; date=20090511" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0070070; proton-transporting V-type ATPase complex assembly" ; primary_name "vma21" ; gene "vma21 ||| SPCC1235.16" ; product "vacuolar H+-ATPase assembly protein Vma21 (predicted)" ;
chromosome3 GeneDB CDS 188100 188149 . + . mRNA SPCC1235.16 ; colour "7" ;
chromosome3 GeneDB CDS 188323 188414 . + . mRNA SPCC1235.16 ; colour "7" ;
chromosome3 GeneDB CDS 188468 188592 . + . mRNA SPCC1235.16 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 189121 189258 . + . mRNA SPCC1235.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.06" ; systematic_id "SPCC1235.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 189259 190092 . + . mRNA SPCC1235.06 ; systematic_id "SPCC1235.06" ; colour "2" ; gene "sif1 ||| SPCC1235.06" ; Alias "sif1" ; db_xref "SPD:10/10H02" ; GO "; spindle pole body
GO:0005515; protein binding
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0043529; GET complex
GO:0045048; protein insertion into ER membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER083C; date=20080409 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "sif1" ; product "Sad1 interacting factor 1" ;
chromosome3 GeneDB CDS 189259 189783 . + . mRNA SPCC1235.06 ; colour "2" ;
chromosome3 GeneDB CDS 189844 190092 . + . mRNA SPCC1235.06 ; colour "2" ;
chromosome3 GeneDB misc_feature 189784 189789 . + . misc_feature unknown_111 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 189826 189843 . + . misc_feature unknown_112 ; colour "6" ; note "ctaatatatttatttcag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 190093 190221 . + . mRNA SPCC1235.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.06" ; systematic_id "SPCC1235.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 190605 190729 . + . mRNA SPCC1235.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.07" ; systematic_id "SPCC1235.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 190730 191822 . + . mRNA SPCC1235.07 ; systematic_id "SPCC1235.07" ; colour "2" ; db_xref "SPD:43/43G07" ; Alias "fta7" ; synonym "sma7 ||| cnl3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106 ||| term=species distribution, conserved in Fungi; date=20100723 ||| term=species distribution, conserved in Eukaryotes; date=20100723 ||| term=species distribution, conserved in Metazoa; date=20100723 ||| term=species distribution, conserved in Eukaryotes only; date=20100723 ||| term=species distribution, conserved in Vertebrates; date=20100723 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100723" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000776; kinetochore
GO:0000779; condensed chromosome, pericentric region" ; primary_name "fta7" ; product "CENP-Q humolog Fta7" ;
chromosome3 GeneDB CDS 190730 190845 . + . mRNA SPCC1235.07 ; colour "2" ;
chromosome3 GeneDB CDS 191023 191179 . + . mRNA SPCC1235.07 ; colour "2" ;
chromosome3 GeneDB CDS 191238 191402 . + . mRNA SPCC1235.07 ; colour "2" ;
chromosome3 GeneDB CDS 191526 191822 . + . mRNA SPCC1235.07 ; colour "2" ;
chromosome3 GeneDB misc_feature 190846 190851 . + . misc_feature unknown_113 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 191002 191022 . + . misc_feature unknown_114 ; colour "6" ; note "ctaactgtgctatcgtaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 191180 191185 . + . misc_feature unknown_115 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 191225 191237 . + . misc_feature unknown_116 ; colour "6" ; note "ctaacatttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 191403 191408 . + . misc_feature unknown_117 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 191511 191525 . + . misc_feature unknown_118 ; colour "6" ; note "ctaatattttcttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 191823 192090 . + . mRNA SPCC1235.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.07" ; systematic_id "SPCC1235.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 192446 193126 . - . mRNA SPCC1235.08c ; systematic_id "SPCC1235.08c" ; colour "10" ; gene "pdh1 ||| SPCC1235.08c" ; Alias "pdh1" ; db_xref "SPD:07/07H07" ; GO "; COPI-coated vesicle
GO:0005794; Golgi apparatus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL107W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TMEM115 ortholog; date=20100727" ; primary_name "pdh1" ; product "DUF1751 family protein" ;
chromosome3 GeneDB CDS 192446 193126 . - . mRNA SPCC1235.08c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 194400 194551 . + . mRNA SPCC1235.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.09" ; systematic_id "SPCC1235.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 194552 196426 . + . mRNA SPCC1235.09 ; systematic_id "SPCC1235.09" ; colour "2" ; gene "hif2 ||| SPCC1235.09" ; Alias "hif2" ; db_xref "SPD:46/46A09" ; GO "GO:0006342; chromatin silencing
GO:0016575; histone deacetylation
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0034967; Set3 complex
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR103W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hif2" ; product "Set3 complex subunit Hif2" ;
chromosome3 GeneDB CDS 194552 194603 . + . mRNA SPCC1235.09 ; colour "2" ;
chromosome3 GeneDB CDS 194694 195460 . + . mRNA SPCC1235.09 ; colour "2" ;
chromosome3 GeneDB CDS 195499 195918 . + . mRNA SPCC1235.09 ; colour "2" ;
chromosome3 GeneDB CDS 195971 196426 . + . mRNA SPCC1235.09 ; colour "2" ;
chromosome3 GeneDB misc_feature 194604 194609 . + . misc_feature unknown_119 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 194667 194693 . + . misc_feature unknown_120 ; colour "6" ; note "ttaacattatcgtgttttttgttgtag, splice branch and accep tor" ;
chromosome3 GeneDB misc_feature 195461 195466 . + . misc_feature unknown_121 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 195488 195498 . + . misc_feature unknown_122 ; colour "6" ; note "ctaacttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 195919 195924 . + . misc_feature unknown_123 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 195955 195970 . + . misc_feature unknown_124 ; colour "6" ; note "ctaacgttttgtatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 196427 196493 . + . mRNA SPCC1235.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.09" ; systematic_id "SPCC1235.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 196547 196808 . - . mRNA SPCC1235.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.10c" ; systematic_id "SPCC1235.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 196809 199316 . - . mRNA SPCC1235.10c ; systematic_id "SPCC1235.10c" ; colour "2" ; gene "sec6 ||| SPCC1235.10c" ; Alias "sec6" ; db_xref "SPD:29/29B04" ; GO "GO:0000145; exocyst
GO:0006887; exocytosis
GO:0006886; intracellular protein transport
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0051285; cell cortex of cell tip
GO:0032153; cell division site" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL068C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec6" ; product "exocyst complex subunit Sec6" ;
chromosome3 GeneDB CDS 196809 198830 . - . mRNA SPCC1235.10c ; colour "2" ;
chromosome3 GeneDB CDS 199029 199133 . - . mRNA SPCC1235.10c ; colour "2" ;
chromosome3 GeneDB CDS 199196 199223 . - . mRNA SPCC1235.10c ; colour "2" ;
chromosome3 GeneDB CDS 199279 199316 . - . mRNA SPCC1235.10c ; colour "2" ;
chromosome3 GeneDB misc_feature 198831 198851 . - . misc_feature unknown_125 ; colour "6" ; note "ctaatgttgatttttttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 199023 199028 . - . misc_feature unknown_126 ; colour "6" ; note "gttagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 199134 199153 . - . misc_feature unknown_127 ; colour "6" ; note "ctaacaattgatgattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 199190 199195 . - . misc_feature unknown_128 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 199224 199236 . - . misc_feature unknown_129 ; colour "6" ; note "ctaactttgtcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 199273 199278 . - . misc_feature unknown_130 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 199315 199350 . - . mRNA SPCC1235.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.10c" ; systematic_id "SPCC1235.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 200020 200129 . + . mRNA SPCC1235.11 ; ID "SPCC1235.11" ; systematic_id "SPCC1235.11" ; note "mRNA from AU006727" ;
chromosome3 GeneDB CDS_parts 200130 200987 . + . mRNA SPCC1235.11 ; db_xref "SPD:11/11D08" ; systematic_id "SPCC1235.11" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL080W; date=19700101 ||| term=human BRP44L ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1235.11" ; product "mitochondrial protein, human BRP44L ortholog" ;
chromosome3 GeneDB CDS 200130 200131 . + . mRNA SPCC1235.11 ; colour "10" ;
chromosome3 GeneDB CDS 200172 200276 . + . mRNA SPCC1235.11 ; colour "10" ;
chromosome3 GeneDB CDS 200365 200459 . + . mRNA SPCC1235.11 ; colour "10" ;
chromosome3 GeneDB CDS 200643 200683 . + . mRNA SPCC1235.11 ; colour "10" ;
chromosome3 GeneDB CDS 200750 200844 . + . mRNA SPCC1235.11 ; colour "10" ;
chromosome3 GeneDB CDS 200900 200987 . + . mRNA SPCC1235.11 ; colour "10" ;
chromosome3 GeneDB intron 200132 200171 . + . intron SPCC1235.11 ; systematic_id "SPCC1235.11" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 200277 200282 . + . misc_feature unknown_131 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 200277 200364 . + . intron SPCC1235.11 ; systematic_id "SPCC1235.11" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 200353 200364 . + . misc_feature unknown_132 ; colour "6" ; note "ctaataagatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 200460 200465 . + . misc_feature unknown_133 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 200460 200642 . + . intron SPCC1235.11 ; systematic_id "SPCC1235.11" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 200630 200642 . + . misc_feature unknown_134 ; colour "6" ; note "ttaatctccttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 200684 200689 . + . misc_feature unknown_135 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 200684 200749 . + . intron SPCC1235.11 ; systematic_id "SPCC1235.11" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 200735 200749 . + . misc_feature unknown_136 ; colour "6" ; note "ctaactagcgtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 200845 200850 . + . misc_feature unknown_137 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 200880 200899 . + . misc_feature unknown_138 ; colour "6" ; note "ctaacgacttatttaattag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 200988 201331 . + . mRNA SPCC1235.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.11" ; systematic_id "SPCC1235.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 201772 202707 . - . mRNA SPCC1235.12c ; systematic_id "SPCC1235.12c" ; colour "2" ; gene "mug146 ||| SPCC1235.12c" ; Alias "mug146" ; db_xref "SPD:13/13B05" ; GO "GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug146" ; product "meiotically upregulated gene Mug46" ;
chromosome3 GeneDB CDS 201772 202707 . - . mRNA SPCC1235.12c ; colour "2" ;
chromosome3 GeneDB CDS_parts 204733 206340 . + . mRNA SPCC1235.13 ; systematic_id "SPCC1235.13" ; colour "2" ; db_xref "SPD:25/25G09" ; Alias "ght6" ; synonym "meu12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0005886; plasma membrane" ; primary_name "ght6" ; product "hexose transporter Ght6" ;
chromosome3 GeneDB CDS 204733 206340 . + . mRNA SPCC1235.13 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 206341 206717 . + . mRNA SPCC1235.13 ; ID "SPCC1235.13" ; systematic_id "SPCC1235.13" ; note "mRNA from AB054532" ;
chromosome3 GeneDB misc_feature 206718 212159 . + . misc_feature unknown_139 ; note "low complexity gene free region" ;
chromosome3 GeneDB misc_feature 208666 210243 . + . misc_feature unknown_140 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG2068" ;
chromosome3 GeneDB 5'-UTR 212160 212312 . + . mRNA SPCC1235.14 ; ID "SPCC1235.14" ; systematic_id "SPCC1235.14" ; note "mRNA from AF017180" ;
chromosome3 GeneDB CDS_parts 212313 213953 . + . mRNA SPCC1235.14 ; systematic_id "SPCC1235.14" ; colour "2" ; gene "ght5 ||| SPCC1235.14" ; Alias "ght5" ; db_xref "SPD:34/34E03" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "ght5" ; product "hexose transporter Ght5" ;
chromosome3 GeneDB CDS 212313 213953 . + . mRNA SPCC1235.14 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 213954 214376 . + . mRNA SPCC1235.14 ; ID "SPCC1235.14" ; systematic_id "SPCC1235.14" ; note "mRNA from SPD179" ;
chromosome3 GeneDB 5'-UTR 215355 215423 . + . mRNA SPCC1235.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.15" ; systematic_id "SPCC1235.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 215424 216910 . + . mRNA SPCC1235.15 ; systematic_id "SPCC1235.15" ; colour "2" ; gene "dga1 ||| SPCC1235.15 ||| SPCC548.01" ; note "non consensus intron fixed 19. Nov. 2003 pers. comm. Jan Dungan" ; Alias "dga1" ; db_xref "SPD:24/24A01" ; synonym "SPCC548.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR245C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004144; diacylglycerol O-acyltransferase activity
GO:0019432; triacylglycerol biosynthesis
GO:0046339; diacylglycerol metabolism
GO:0019915; sequestering of lipid" ; primary_name "dga1" ; product "diacylglycerol O-acyltransferase Dga1" ; EC_number "2.3.1.20" ;
chromosome3 GeneDB CDS 215424 215600 . + . mRNA SPCC1235.15 ; colour "2" ;
chromosome3 GeneDB CDS 215850 216078 . + . mRNA SPCC1235.15 ; colour "2" ;
chromosome3 GeneDB CDS 216187 216498 . + . mRNA SPCC1235.15 ; colour "2" ;
chromosome3 GeneDB CDS 216591 216910 . + . mRNA SPCC1235.15 ; colour "2" ;
chromosome3 GeneDB misc_feature 215601 215606 . + . misc_feature unknown_141 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 215830 215849 . + . misc_feature unknown_142 ; colour "6" ; note "ctaatccttcattcctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 216079 216084 . + . misc_feature unknown_143 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 216169 216186 . + . misc_feature unknown_144 ; colour "6" ; note "ctaaccttatgctattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 216363 216463 . + . misc_feature unknown_145 ; note "nominal overlap with SPCC1235 AL031764 S.pombe chromosome III" ;
chromosome3 GeneDB 3'-UTR 216911 217060 . + . mRNA SPCC1235.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1235.15" ; systematic_id "SPCC1235.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 218342 218642 . - . LTR unknown_146 ; note "Tf1-type LTR" ;
chromosome3 GeneDB CDS_parts 219185 220283 . - . mRNA SPCC548.02c ; systematic_id "SPCC548.02c" ; colour "13" ; obsolete_name "wtf11-pseudo" ; Alias "wtf3" ; synonym "meu9 ||| SPCC548.02" ; pseudo "_no_value" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101" ; primary_name "wtf3" ; product "pseudogene wtf element Wtf3 (no methionine)" ;
chromosome3 GeneDB CDS 219185 219261 . - . mRNA SPCC548.02c ; colour "13" ;
chromosome3 GeneDB CDS 219294 219368 . - . mRNA SPCC548.02c ; colour "13" ;
chromosome3 GeneDB CDS 219409 219684 . - . mRNA SPCC548.02c ; colour "13" ;
chromosome3 GeneDB CDS 219734 219979 . - . mRNA SPCC548.02c ; colour "13" ;
chromosome3 GeneDB CDS 220148 220283 . - . mRNA SPCC548.02c ; colour "13" ;
chromosome3 GeneDB misc_feature 219262 219275 . - . misc_feature unknown_147 ; colour "6" ; note "ctaattatttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 219288 219293 . - . misc_feature unknown_148 ; colour "6" ; note "gtactt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 219369 219380 . - . misc_feature unknown_149 ; colour "6" ; note "ctgacaacatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 219403 219408 . - . misc_feature unknown_150 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 219685 219696 . - . misc_feature unknown_151 ; colour "6" ; note "ctaactcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 219728 219733 . - . misc_feature unknown_152 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 219980 219992 . - . misc_feature unknown_153 ; colour "6" ; note "ttaatttaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 220142 220147 . - . misc_feature unknown_154 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 221199 222701 . - . mRNA SPCC548.03c ; systematic_id "SPCC548.03c" ; colour "12" ; gene "wtf4 ||| SPCC548.03c" ; Alias "wtf4" ; obsolete_name "wtf13" ; db_xref "SPD:51/51D11" ; synonym "SPCC548.03" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf4" ; product "wtf element Wtf4" ;
chromosome3 GeneDB CDS 221199 221335 . - . mRNA SPCC548.03c ; colour "12" ;
chromosome3 GeneDB CDS 221395 221457 . - . mRNA SPCC548.03c ; colour "12" ;
chromosome3 GeneDB CDS 221498 221689 . - . mRNA SPCC548.03c ; colour "12" ;
chromosome3 GeneDB CDS 221726 222016 . - . mRNA SPCC548.03c ; colour "12" ;
chromosome3 GeneDB CDS 222065 222337 . - . mRNA SPCC548.03c ; colour "12" ;
chromosome3 GeneDB CDS 222566 222701 . - . mRNA SPCC548.03c ; colour "12" ;
chromosome3 GeneDB misc_feature 221336 221357 . - . misc_feature unknown_155 ; colour "6" ; note "cttacccgactaggaggtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 221389 221394 . - . misc_feature unknown_156 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 221458 221470 . - . misc_feature unknown_157 ; colour "6" ; note "ctaaccataccag, splice branch and acceptor" ;
chromosome3 GeneDB intron 221458 221497 . - . intron SPCC548.03c ; systematic_id "SPCC548.03c" ; colour "2" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 221492 221497 . - . misc_feature unknown_158 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 221690 221700 . - . misc_feature unknown_159 ; colour "6" ; note "ctaacatacag, splice branch and acceptor" ;
chromosome3 GeneDB intron 221690 221725 . - . intron SPCC548.03c ; systematic_id "SPCC548.03c" ; colour "2" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 221720 221725 . - . misc_feature unknown_160 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 222017 222028 . - . misc_feature unknown_161 ; colour "6" ; note "ctaactcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 222059 222064 . - . misc_feature unknown_162 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 222338 222350 . - . misc_feature unknown_163 ; colour "6" ; note "ttaatgctttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 222560 222565 . - . misc_feature unknown_164 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB LTR 222987 223246 . - . LTR unknown_165 ; note "Tf2-type LTR" ;
chromosome3 GeneDB 5'-UTR 223333 223384 . + . mRNA SPCC548.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC548.04" ; systematic_id "SPCC548.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 223385 223860 . + . mRNA SPCC548.04 ; systematic_id "SPCC548.04" ; colour "7" ; gene "SPCC548.04 ||| urm1" ; Alias "urm1" ; db_xref "SPD:04/04C07" ; GO "GO:0031386; protein tag
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0032447; protein urmylation" ; controlled_curation "term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090223" ; primary_name "urm1" ; product "ubiquitin family protein Urm1 (predicted)" ;
chromosome3 GeneDB CDS 223385 223407 . + . mRNA SPCC548.04 ; colour "7" ;
chromosome3 GeneDB CDS 223451 223603 . + . mRNA SPCC548.04 ; colour "7" ;
chromosome3 GeneDB CDS 223687 223796 . + . mRNA SPCC548.04 ; colour "7" ;
chromosome3 GeneDB CDS 223853 223860 . + . mRNA SPCC548.04 ; colour "7" ;
chromosome3 GeneDB misc_feature 223408 223413 . + . misc_feature unknown_166 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 223434 223450 . + . misc_feature unknown_167 ; colour "6" ; note "gtaacctattattgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 223604 223609 . + . misc_feature unknown_168 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 223670 223686 . + . misc_feature unknown_169 ; colour "6" ; note "ctaacacttccctgcag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 223882 224086 . - . mRNA SPCC548.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC548.05c" ; systematic_id "SPCC548.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 224087 225643 . - . mRNA SPCC548.05c ; db_xref "SPD:25/25B12" ; systematic_id "SPCC548.05c" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0005634; nucleus
GO:0034080; CenH3-containing nucleosome assembly at centromere" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YOL054W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC548.05c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome3 GeneDB CDS 224087 225172 . - . mRNA SPCC548.05c ; colour "7" ;
chromosome3 GeneDB CDS 225323 225643 . - . mRNA SPCC548.05c ; colour "7" ;
chromosome3 GeneDB misc_feature 225173 225183 . - . misc_feature unknown_170 ; colour "6" ; note "ctaataaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 225317 225322 . - . misc_feature unknown_171 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 225644 225756 . - . mRNA SPCC548.05c ; ID "SPCC548.05c" ; systematic_id "SPCC548.05c" ; note "mRNA from spc10274" ;
chromosome3 GeneDB misc_RNA 226130 226215 . + . misc_RNA SPNCRNA.460 ; db_xref "PMID:18488015" ; synonym "SPNG2075" ; systematic_id "SPNCRNA.460" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 3'-UTR 226336 226756 . - . mRNA SPCC548.06c ; ID "SPCC548.06c" ; systematic_id "SPCC548.06c" ; note "mRNA from spc05276" ;
chromosome3 GeneDB CDS_parts 226757 228400 . - . mRNA SPCC548.06c ; systematic_id "SPCC548.06c" ; colour "7" ; gene "ght8 ||| SPCC548.06c" ; Alias "ght8" ; db_xref "SPD:34/34E10" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "ght8" ; product "hexose transporter Ght8 (predicted)" ;
chromosome3 GeneDB CDS 226757 228400 . - . mRNA SPCC548.06c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 228399 228830 . - . mRNA SPCC548.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC548.06c" ; systematic_id "SPCC548.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 228401 232833 . + . misc_feature unknown_172 ; note "gene free region" ;
chromosome3 GeneDB CDS_parts 232834 234507 . - . mRNA SPCC548.07c ; systematic_id "SPCC548.07c" ; colour "2" ; gene "ght1 ||| SPCC548.07c" ; Alias "ght1" ; db_xref "SPD:35/35A08" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "ght1" ; product "hexose transporter Ght1" ;
chromosome3 GeneDB CDS 232834 234507 . - . mRNA SPCC548.07c ; colour "2" ;
chromosome3 GeneDB misc_feature 234853 234953 . + . misc_feature unknown_173 ; note "nominal overlap with SPCC1529 AL132664 S.pombe chromosome III cosmid c1529." ;
chromosome3 GeneDB misc_feature 234853 237553 . + . misc_feature unknown_174 ; note "low-complexity gene-free region" ;
chromosome3 GeneDB CDS_parts 237554 239250 . + . mRNA SPCC1529.01 ; systematic_id "SPCC1529.01" ; colour "7" ; gene "SPCC1529.01 ||| SPCC794.14" ; note "coordinates updated 12/Oct?07, pers. comm. Brian Wilhelm" ; db_xref "SPD:25/25B08" ; synonym "SPCC794.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPBC1348.05 and SPAPB1A11.01 and SPBPB2B2.16c and SPAC750.02c; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101" ; GO "GO:0006810; transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB CDS 237554 237923 . + . mRNA SPCC1529.01 ; colour "7" ;
chromosome3 GeneDB CDS 237975 238080 . + . mRNA SPCC1529.01 ; colour "7" ;
chromosome3 GeneDB CDS 238139 238533 . + . mRNA SPCC1529.01 ; colour "7" ;
chromosome3 GeneDB CDS 238588 239092 . + . mRNA SPCC1529.01 ; colour "7" ;
chromosome3 GeneDB CDS 239151 239250 . + . mRNA SPCC1529.01 ; colour "7" ;
chromosome3 GeneDB misc_feature 237924 237929 . + . misc_feature unknown_175 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 237958 237974 . + . misc_feature unknown_176 ; colour "6" ; note "ctaaccttttgtcaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 238081 238086 . + . misc_feature unknown_177 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 238119 238138 . + . misc_feature unknown_178 ; colour "6" ; note "ctaacgttttctttattcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 238534 238539 . + . misc_feature unknown_179 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 238575 238587 . + . misc_feature unknown_180 ; colour "6" ; note "cttaccgttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 239002 239102 . + . misc_feature unknown_181 ; note "nominal overlap with cosmid SPCC1529 and cosmid SPCC794" ;
chromosome3 GeneDB intron 239093 239150 . + . intron SPCC1529.01 ; systematic_id "SPCC1529.01" ; note "confirmed intron, transcriptome data" ;
chromosome3 GeneDB 3'-UTR 239251 239381 . + . mRNA SPCC1529.01 ; ID "SPCC1529.01" ; db_xref "PMID:18488015" ; systematic_id "SPCC1529.01" ; note "UTR predicted from transcriptome data SPNG2085" ;
chromosome3 GeneDB CDS_parts 239781 241208 . - . mRNA SPCC794.01c ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00480; ||| SPD:22/22A02" ; systematic_id "SPCC794.01c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, chronic non- spherocytic hemolytic anemia; date=20061122 ||| term=orthologous to S. cerevisiae YNL241C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009051; pentose-phosphate shunt, oxidative branch
GO:0051156; glucose 6-phosphate metabolic process
GO:0004345; glucose-6-phosphate 1-dehydrogenase activity
GO:0005737; cytoplasm" ; gene "SPCC794.01c" ; product "glucose-6-phosphate 1-dehydrogenase (predicted)" ; EC_number "1.1.1.49" ;
chromosome3 GeneDB CDS 239781 241208 . - . mRNA SPCC794.01c ; colour "7" ;
chromosome3 GeneDB CDS_parts 243855 244969 . + . mRNA SPCC794.02 ; systematic_id "SPCC794.02" ; colour "12" ; gene "SPCC794.02" ; obsolete_name "wtf4" ; db_xref "SPD:51/51C12" ; Alias "wtf5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf5" ; product "wtf element Wtf5" ;
chromosome3 GeneDB CDS 243855 243993 . + . mRNA SPCC794.02 ; colour "12" ;
chromosome3 GeneDB CDS 244160 244405 . + . mRNA SPCC794.02 ; colour "12" ;
chromosome3 GeneDB CDS 244455 244760 . + . mRNA SPCC794.02 ; colour "12" ;
chromosome3 GeneDB CDS 244802 244843 . + . mRNA SPCC794.02 ; colour "12" ;
chromosome3 GeneDB CDS 244893 244969 . + . mRNA SPCC794.02 ; colour "12" ;
chromosome3 GeneDB misc_feature 243994 243999 . + . misc_feature unknown_182 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 244147 244159 . + . misc_feature unknown_183 ; colour "6" ; note "ttaatttaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 244406 244411 . + . misc_feature unknown_184 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 244443 244454 . + . misc_feature unknown_185 ; colour "6" ; note "ctaattcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 244761 244766 . + . misc_feature unknown_186 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 244790 244801 . + . misc_feature unknown_187 ; colour "6" ; note "ttaacaatacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 244844 244849 . + . misc_feature unknown_188 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 244879 244892 . + . misc_feature unknown_189 ; colour "6" ; note "ctaattatcattag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 245964 247628 . + . mRNA SPCC794.03 ; db_xref "SPD:34/34H07" ; systematic_id "SPCC794.03" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0015171; amino acid transmembrane transporter activity
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPCC794.03" ; product "amino acid permease (predicted)" ;
chromosome3 GeneDB CDS 245964 247628 . + . mRNA SPCC794.03 ; colour "7" ;
chromosome3 GeneDB CDS_parts 248551 250194 . - . mRNA SPCC794.04c ; db_xref "SPD:34/34E11" ; systematic_id "SPCC794.04c" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC11D3.05 and SPBC530.02; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC794.04c" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB CDS 248551 250194 . - . mRNA SPCC794.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 250194 254349 . + . misc_feature unknown_190 ; note "low complexity gene-free region" ;
chromosome3 GeneDB LTR 254350 254629 . - . LTR unknown_191 ; note "Tf2-type LTR" ;
chromosome3 GeneDB misc_feature 254621 256950 . - . misc_feature Tf-fragment4 ; systematic_id "Tf-fragment4" ; note "degraded Tf2 retrotransposable element ||| SPCC794.05c" ;
chromosome3 GeneDB LTR 257183 257531 . - . LTR unknown_192 ; note "Tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 260437 261732 . + . mRNA SPCC794.06 ; db_xref "SPD:22/22E05" ; systematic_id "SPCC794.06" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPCC794.06" ; product "TDT malic acid transporter (predicted)" ;
chromosome3 GeneDB CDS 260437 261732 . + . mRNA SPCC794.06 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 261733 262325 . + . mRNA SPCC794.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC794.06" ; systematic_id "SPCC794.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 262764 262810 . + . mRNA SPCC794.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC794.07" ; systematic_id "SPCC794.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 262811 264399 . + . mRNA SPCC794.07 ; systematic_id "SPCC794.07" ; colour "7" ; gene "SPCC794.07" ; Alias "lat1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00620; ||| SPD:25/25E12" ; GO "GO:0006086; acetyl-CoA biosynthesis from pyruvate
GO:0004742; dihydrolipoyllysine-residue acetyltransferase activity
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, lactic acidosis; date=20080101 ||| term=disease associated, maple syrup urine disease type II; date=20080101 ||| term=orthologous to S. cerevisiae YNL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, lipoylated; qualifier=predicted; evidence=ISS; cv=pt_mod; date=20100305" ; primary_name "lat1" ; product "dihydrolipoamide S-acetyltransferase E2, Lat1 (predicted)" ; EC_number "2.3.1.12" ;
chromosome3 GeneDB CDS 262811 262884 . + . mRNA SPCC794.07 ; colour "7" ;
chromosome3 GeneDB CDS 262971 263041 . + . mRNA SPCC794.07 ; colour "7" ;
chromosome3 GeneDB CDS 263093 264399 . + . mRNA SPCC794.07 ; colour "7" ;
chromosome3 GeneDB misc_feature 262885 262890 . + . misc_feature unknown_193 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 262956 262970 . + . misc_feature unknown_194 ; colour "6" ; note "ctaatcagtgtgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 263042 263047 . + . misc_feature unknown_195 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 263077 263092 . + . misc_feature unknown_196 ; colour "6" ; note "ctaacagttaccatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 264400 264691 . + . mRNA SPCC794.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC794.07" ; systematic_id "SPCC794.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 265405 265444 . + . mRNA SPCC794.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC794.08" ; systematic_id "SPCC794.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 265445 267881 . + . mRNA SPCC794.08 ; db_xref "SPD:28/28G05" ; systematic_id "SPCC794.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YMR212C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0090002; establishment of protein localization in plasma membrane
GO:0005739; mitochondrion
GO:0005886; plasma membrane" ; gene "SPCC794.08" ; product "HEAT repeat protein, involved in localization to plasma membrane (predicted)" ;
chromosome3 GeneDB CDS 265445 265644 . + . mRNA SPCC794.08 ; colour "7" ;
chromosome3 GeneDB CDS 265685 267881 . + . mRNA SPCC794.08 ; colour "7" ;
chromosome3 GeneDB misc_feature 265645 265650 . + . misc_feature unknown_197 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 265671 265684 . + . misc_feature unknown_198 ; colour "6" ; note "ctaaatgtttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 267882 267936 . + . mRNA SPCC794.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC794.08" ; systematic_id "SPCC794.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 268038 268096 . - . mRNA SPCC794.09c ; ID "SPCC794.09c" ; db_xref "EMBL:D82571" ; systematic_id "SPCC794.09c" ;
chromosome3 GeneDB CDS_parts 268097 269479 . - . mRNA SPCC794.09c ; systematic_id "SPCC794.09c" ; colour "2" ; gene "SPCC794.09c ||| ef1a-a" ; Alias "ef1a-a" ; obsolete_name "tef1-e ||| ef1a-e" ; db_xref "SPD:44/44D05" ; GO "GO:0005853; eukaryotic translation elongation factor 1 complex
GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR080W and YBR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ef1a-a" ; product "translation elongation factor EF-1 alpha Ef1a-a" ;
chromosome3 GeneDB CDS 268097 269479 . - . mRNA SPCC794.09c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 270960 270965 . + . mRNA SPCC794.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC794.10" ; systematic_id "SPCC794.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 270966 272465 . + . mRNA SPCC794.10 ; db_xref "SPD:24/24C12" ; systematic_id "SPCC794.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL035W and YHL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0003983; UTP:glucose-1-phosphate uridylyltransferase activity
GO:0006011; UDP-glucose metabolism
GO:0005737; cytoplasm" ; gene "SPCC794.10" ; product "UTP-glucose-1-phosphate uridylyltransferase (predicted)" ; EC_number "2.7.7.9" ;
chromosome3 GeneDB CDS 270966 272465 . + . mRNA SPCC794.10 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 272466 272777 . + . mRNA SPCC794.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC794.10" ; systematic_id "SPCC794.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 273015 273166 . - . mRNA SPCC794.11c ; ID "SPCC794.11c" ; db_xref "EMBL:D89162" ; systematic_id "SPCC794.11c" ;
chromosome3 GeneDB CDS_parts 273167 274597 . - . mRNA SPCC794.11c ; db_xref "SPD:22/22A05" ; systematic_id "SPCC794.11c" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0030125; clathrin vesicle coat
GO:0005546; phosphatidylinositol-4,5-bisphosphate binding
GO:0006895; Golgi to endosome transport
GO:0000147; actin cortical patch assembly
GO:0007015; actin filament organization
GO:0006897; endocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YJR125C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC794.11c" ; product "ENTH/VHS domain protein Ent3 (predicted)" ;
chromosome3 GeneDB CDS 273167 274597 . - . mRNA SPCC794.11c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 274596 274757 . - . mRNA SPCC794.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC794.11c" ; systematic_id "SPCC794.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 275305 275513 . - . mRNA SPCC794.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC794.12c" ; systematic_id "SPCC794.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 275514 277211 . - . mRNA SPCC794.12c ; systematic_id "SPCC794.12c" ; colour "2" ; gene "mae2 ||| SPCC794.12c" ; Alias "mae2" ; db_xref "SPD:35/35D05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005739; mitochondrion
GO:0016619; malate dehydrogenase (oxaloacetate- decarboxylating) activity
GO:0006108; malate metabolic process
GO:0006090; pyruvate metabolism
GO:0006099; tricarboxylic acid cycle" ; primary_name "mae2" ; product "malic enzyme, malate dehydrogenase (oxaloacetate decarboxylating), Mae2" ; EC_number "1.1.1.38" ;
chromosome3 GeneDB CDS 275514 277211 . - . mRNA SPCC794.12c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 277210 277232 . - . mRNA SPCC794.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC794.12c" ; systematic_id "SPCC794.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 278906 279209 . + . mRNA SPCC794.15 ; db_xref "SPD:01/01E03" ; systematic_id "SPCC794.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "6" ; gene "SPCC794.15" ; product "dubious" ;
chromosome3 GeneDB CDS 278906 278983 . + . mRNA SPCC794.15 ; colour "6" ;
chromosome3 GeneDB CDS 279027 279209 . + . mRNA SPCC794.15 ; colour "6" ;
chromosome3 GeneDB CDS_parts 279434 280999 . + . mRNA SPCC553.12c ; db_xref "SPD:45/45B03" ; systematic_id "SPCC553.12c" ; synonym "SPCC794.13" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC553.12c ||| SPCC794.13" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 279434 280999 . + . mRNA SPCC553.12c ; colour "10" ;
chromosome3 GeneDB misc_feature 279735 279898 . + . misc_feature unknown_199 ; note "nominal overlap with cosmid SPCC794, EM:AL023595 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 279735 279898 . - . misc_feature unknown_200 ; note "nominal overlap with cosmid SPCC553, EM:AL023704 S. pombe chromosome 3" ;
chromosome3 GeneDB 5'-UTR 281850 281901 . + . mRNA SPCC553.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.11c" ; systematic_id "SPCC553.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 281902 282410 . + . mRNA SPCC553.11c ; db_xref "SPD:05/05A06" ; systematic_id "SPCC553.11c" ; colour "7" ; GO "GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0005672; transcription factor TFIIA complex
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC553.11c" ; product "transcription factor TFIIA complex small subunit (predicted)" ;
chromosome3 GeneDB CDS 281902 281936 . + . mRNA SPCC553.11c ; colour "7" ;
chromosome3 GeneDB CDS 282056 282137 . + . mRNA SPCC553.11c ; colour "7" ;
chromosome3 GeneDB CDS 282204 282410 . + . mRNA SPCC553.11c ; colour "7" ;
chromosome3 GeneDB misc_feature 281937 281942 . + . misc_feature unknown_201 ; colour "6" ; note "gtactt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 282041 282055 . + . misc_feature unknown_202 ; colour "6" ; note "ctgacacatttgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 282138 282143 . + . misc_feature unknown_203 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 282182 282203 . + . misc_feature unknown_204 ; colour "6" ; note "ctaatctcacaatttgatatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 282411 282411 . + . mRNA SPCC553.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.11c" ; systematic_id "SPCC553.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 283181 283421 . - . mRNA SPCC553.10 ; ID "SPCC553.10" ; systematic_id "SPCC553.10" ; note "mRNA from AU010226" ;
chromosome3 GeneDB CDS_parts 283422 284471 . - . mRNA SPCC553.10 ; db_xref "SPD:16/16A08" ; systematic_id "SPCC553.10" ; colour "10" ; GO "GO:0009986; cell surface" ; controlled_curation "term=; date=19700101 ||| term=similar to N. crassa ncu05667; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; gene "SPCC553.10" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 283422 284471 . - . mRNA SPCC553.10 ; colour "10" ;
chromosome3 GeneDB 5'-UTR 284470 285040 . - . mRNA SPCC553.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.10" ; systematic_id "SPCC553.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 286728 287053 . - . LTR unknown_205 ; colour "4" ; note "degraded tf2-type LTR" ;
chromosome3 GeneDB 5'-UTR 287240 287639 . + . mRNA SPCC553.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.09c" ; systematic_id "SPCC553.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 287640 289486 . + . mRNA SPCC553.09c ; systematic_id "SPCC553.09c" ; colour "2" ; gene "spb70 ||| SPCC553.09c ||| pol12" ; Alias "spb70" ; db_xref "SPD:36/36H01" ; synonym "pol12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15314153; date=19700101 ||| term=orthologous to S. cerevisiae YBL035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0005658; alpha DNA polymerase:primase complex
GO:0000790; nuclear chromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006270; DNA replication initiation
GO:0006269; DNA replication, synthesis of RNA primer" ; primary_name "spb70" ; product "DNA polymerase alpha B-subunit" ;
chromosome3 GeneDB CDS 287640 287905 . + . mRNA SPCC553.09c ; colour "2" ;
chromosome3 GeneDB CDS 287947 288925 . + . mRNA SPCC553.09c ; colour "2" ;
chromosome3 GeneDB CDS 288968 289276 . + . mRNA SPCC553.09c ; colour "2" ;
chromosome3 GeneDB CDS 289316 289486 . + . mRNA SPCC553.09c ; colour "2" ;
chromosome3 GeneDB misc_feature 287906 287911 . + . misc_feature unknown_206 ; colour "6" ; note "gtgcgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 287932 287946 . + . misc_feature unknown_207 ; colour "6" ; note "ctaacaaatatctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 288926 288931 . + . misc_feature unknown_208 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 288953 288967 . + . misc_feature unknown_209 ; colour "6" ; note "ttgaccaatccatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 289277 289282 . + . misc_feature unknown_210 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 289277 289315 . + . intron SPCC553.09c ; systematic_id "SPCC553.09c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 289304 289315 . + . misc_feature unknown_211 ; colour "6" ; note "ctaatgttatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 289487 289704 . + . mRNA SPCC553.09c ; ID "SPCC553.09c" ; systematic_id "SPCC553.09c" ; note "mRNA from AU013470" ;
chromosome3 GeneDB 5'-UTR 289881 289911 . + . mRNA SPCC553.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.08c" ; systematic_id "SPCC553.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 289912 293014 . + . mRNA SPCC553.08c ; db_xref "SPD:30/30A08" ; systematic_id "SPCC553.08c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005737; cytoplasm
GO:0003924; GTPase activity
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL163C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC553.08c" ; product "GTPase Ria1 (predicted)" ;
chromosome3 GeneDB CDS 289912 290007 . + . mRNA SPCC553.08c ; colour "7" ;
chromosome3 GeneDB CDS 290063 292215 . + . mRNA SPCC553.08c ; colour "7" ;
chromosome3 GeneDB CDS 292261 293014 . + . mRNA SPCC553.08c ; colour "7" ;
chromosome3 GeneDB misc_feature 290008 290013 . + . misc_feature unknown_212 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 290046 290062 . + . misc_feature unknown_213 ; colour "6" ; note "ctaatgattaattaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 292216 292221 . + . misc_feature unknown_214 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 292248 292260 . + . misc_feature unknown_215 ; colour "6" ; note "ctaacaatactag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 293015 293180 . + . mRNA SPCC553.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.08c" ; systematic_id "SPCC553.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 293402 293443 . + . mRNA SPCC553.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.07c" ; systematic_id "SPCC553.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 293444 295218 . + . mRNA SPCC553.07c ; systematic_id "SPCC553.07c" ; colour "2" ; Alias "kpa1" ; db_xref "SPD:45/45B06" ; synonym "mug40 ||| pol(kappa) ||| pol-kappa" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090729 ||| term=human POLK ortholog; date=20100224" ; GO "GO:0000790; nuclear chromatin
GO:0003887; DNA-directed DNA polymerase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006281; DNA repair
GO:0006974; response to DNA damage stimulus
GO:0019985; translesion synthesis
GO:0000077; DNA damage checkpoint" ; primary_name "kpa1" ; product "DinB translesion DNA repair polymerase, pol kappa" ; EC_number "2.7.7.7" ; reserved_name "kpa1" ;
chromosome3 GeneDB CDS 293444 293936 . + . mRNA SPCC553.07c ; colour "2" ;
chromosome3 GeneDB CDS 293976 294415 . + . mRNA SPCC553.07c ; colour "2" ;
chromosome3 GeneDB CDS 294462 294974 . + . mRNA SPCC553.07c ; colour "2" ;
chromosome3 GeneDB CDS 295021 295218 . + . mRNA SPCC553.07c ; colour "2" ;
chromosome3 GeneDB misc_feature 293937 293942 . + . misc_feature unknown_216 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 293937 293975 . + . intron SPCC553.07c ; systematic_id "SPCC553.07c" ; note "confirmed, (pers. comm. Charley Chahwan)" ;
chromosome3 GeneDB misc_feature 293961 293975 . + . misc_feature unknown_217 ; colour "6" ; note "ctaatgctgaataag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 294416 294421 . + . misc_feature unknown_218 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB intron 294416 294461 . + . intron SPCC553.07c ; systematic_id "SPCC553.07c" ; note "confirmed, (pers. comm. Charley Chahwan)" ;
chromosome3 GeneDB misc_feature 294450 294461 . + . misc_feature unknown_219 ; colour "6" ; note "ttaacattacag, splice branch and acceptor" ;
chromosome3 GeneDB intron 294975 295020 . + . intron SPCC553.07c ; systematic_id "SPCC553.07c" ; note "confirmed, (pers. comm. Charley Chahwan)" ;
chromosome3 GeneDB 3'-UTR 295272 295481 . - . mRNA SPCC553.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.06" ; systematic_id "SPCC553.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 295482 296487 . - . mRNA SPCC553.06 ; systematic_id "SPCC553.06" ; colour "7" ; gene "SPCC553.06" ; db_xref "SPD:14/14H01" ; Alias "swp1" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation
GO:0004579; dolichyl-diphosphooligosaccharide- protei nglycotransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR149W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RPN2 ortholog; date=20100923" ; primary_name "swp1" ; product "oligosaccharyltransferase delta subunit Swp1 (predicted)" ;
chromosome3 GeneDB CDS 295482 295967 . - . mRNA SPCC553.06 ; colour "7" ;
chromosome3 GeneDB CDS 296068 296266 . - . mRNA SPCC553.06 ; colour "7" ;
chromosome3 GeneDB CDS 296357 296487 . - . mRNA SPCC553.06 ; colour "7" ;
chromosome3 GeneDB misc_feature 295968 295979 . - . misc_feature unknown_220 ; colour "6" ; note "ctaaccttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 296062 296067 . - . misc_feature unknown_221 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 296267 296287 . - . misc_feature unknown_222 ; colour "6" ; note "ctaactctcttatctctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 296351 296356 . - . misc_feature unknown_223 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 296486 296536 . - . mRNA SPCC553.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.06" ; systematic_id "SPCC553.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB repeat_region 296699 298546 . - . repeat_region unknown_224 ; note "wtf element" ;
chromosome3 GeneDB CDS_parts 297140 298258 . - . mRNA SPCC553.05c ; systematic_id "SPCC553.05c" ; colour "13" ; gene "wtf6 ||| SPCC553.05c" ; Alias "wtf6" ; db_xref "SPD:51/51D01" ; obsolete_name "wtf2-pseudo" ; synonym "SPCC553.05" ; pseudo "_no_value" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf6" ; product "pseudogene wtf element Wtf6" ;
chromosome3 GeneDB CDS 297140 297216 . - . mRNA SPCC553.05c ; colour "13" ;
chromosome3 GeneDB CDS 297266 297308 . - . mRNA SPCC553.05c ; colour "13" ;
chromosome3 GeneDB CDS 297384 297655 . - . mRNA SPCC553.05c ; colour "13" ;
chromosome3 GeneDB CDS 297705 297950 . - . mRNA SPCC553.05c ; colour "13" ;
chromosome3 GeneDB CDS 298119 298258 . - . mRNA SPCC553.05c ; colour "13" ;
chromosome3 GeneDB LTR 298547 298890 . - . LTR unknown_225 ; note "tf2 type LTR" ;
chromosome3 GeneDB LTR 298890 299217 . + . LTR unknown_226 ; note "Tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 300340 302227 . - . mRNA SPCC553.04 ; systematic_id "SPCC553.04" ; colour "7" ; gene "cyp9 ||| SPCC553.04" ; Alias "cyp9" ; db_xref "SPD:26/26D12" ; GO "GO:0006342; chromatin silencing
GO:0000790; nuclear chromatin
GO:0042393; histone binding
GO:0031060; regulation of histone methylation
GO:0003755; peptidyl-prolyl cis-trans isomerase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=WD repeat protein; date=20070822 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cyp9" ; product "WD repeat containing cyclophilin family peptidyl- prolyl cis-trans isomerase Cyp9 (predicted)" ;
chromosome3 GeneDB CDS 300340 302102 . - . mRNA SPCC553.04 ; colour "7" ;
chromosome3 GeneDB CDS 302158 302227 . - . mRNA SPCC553.04 ; colour "7" ;
chromosome3 GeneDB misc_feature 302103 302122 . - . misc_feature unknown_227 ; note "ctgatgctttgtactattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 302152 302157 . - . misc_feature unknown_228 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 302352 305210 . - . mRNA SPCC553.03 ; systematic_id "SPCC553.03" ; colour "7" ; gene "pex1 ||| SPCC553.03" ; Alias "pex1" ; db_xref "SPD:47/47D01" ; GO "GO:0005777; peroxisome
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0007031; peroxisome organization and biogenesis
GO:0006996; organelle organization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YKL197C; date=19700101 ||| term=disease associated, peroxisomal defects; date=20070627 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pex1" ; product "AAA family ATPase Pex1 (predicted)" ;
chromosome3 GeneDB CDS 302352 304934 . - . mRNA SPCC553.03 ; colour "7" ;
chromosome3 GeneDB CDS 304980 305210 . - . mRNA SPCC553.03 ; colour "7" ;
chromosome3 GeneDB misc_feature 304935 304946 . - . misc_feature unknown_229 ; note "ctaatctcttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 304974 304979 . - . misc_feature unknown_230 ; note "gtaaaa, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 305209 305280 . - . mRNA SPCC553.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.03" ; systematic_id "SPCC553.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 305778 305987 . - . mRNA SPCC553.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.02" ; systematic_id "SPCC553.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 305988 308481 . - . mRNA SPCC553.02 ; db_xref "SPD:29/29A04" ; systematic_id "SPCC553.02" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003952; NAD+ synthase (glutamine-hydrolyzing) activity
GO:0009435; NAD biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016810; hydrolase activity, acting on carbon- nitrogen (but not peptide) bonds
GO:0034641; cellular ntirogen compound metabolic process
GO:0005524; ATP binding" ; gene "SPCC553.02" ; product "glutamine-dependent NAD(+) synthetase (predicted)" ; EC_number "6.3.5.1 ||| 3.5.-.-" ;
chromosome3 GeneDB CDS 305988 306194 . - . mRNA SPCC553.02 ; colour "7" ;
chromosome3 GeneDB CDS 306247 306574 . - . mRNA SPCC553.02 ; colour "7" ;
chromosome3 GeneDB CDS 306624 307035 . - . mRNA SPCC553.02 ; colour "7" ;
chromosome3 GeneDB CDS 307082 308091 . - . mRNA SPCC553.02 ; colour "7" ;
chromosome3 GeneDB CDS 308292 308408 . - . mRNA SPCC553.02 ; colour "7" ;
chromosome3 GeneDB CDS 308453 308481 . - . mRNA SPCC553.02 ; colour "7" ;
chromosome3 GeneDB misc_feature 306195 306207 . - . misc_feature unknown_231 ; note "ctaactttataag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 306241 306246 . - . misc_feature unknown_232 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 306575 306590 . - . misc_feature unknown_233 ; note "ctgacaaatttacaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 306618 306623 . - . misc_feature unknown_234 ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 307036 307056 . - . misc_feature unknown_235 ; note "ctaattactgaccttcaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 307076 307081 . - . misc_feature unknown_236 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 308092 308107 . - . misc_feature unknown_237 ; note "ttaacaaacgcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 308286 308291 . - . misc_feature unknown_238 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 308409 308421 . - . misc_feature unknown_239 ; note "ctaacttctgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 308447 308452 . - . misc_feature unknown_240 ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 308480 308635 . - . mRNA SPCC553.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.02" ; systematic_id "SPCC553.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 310539 312686 . + . mRNA SPCC553.01c ; systematic_id "SPCC553.01c" ; colour "7" ; gene "SPCC553.01c ||| SPCC736.01c" ; db_xref "SPD:25/25C07" ; synonym "SPCC736.01c" ; GO "GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human FLJ11331 ortholog; date=20061212 ||| term=orthologous to S. cerevisiae YGR042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "meiotic chromosome segregation protein (predicted)" ;
chromosome3 GeneDB CDS 310539 312686 . + . mRNA SPCC553.01c ; colour "7" ;
chromosome3 GeneDB misc_feature 311529 311709 . - . misc_feature unknown_241 ; note "nominal overlap with cosmid SPCC553, EM:AL023704 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 311529 311709 . + . misc_feature unknown_242 ; note "nominal overlap with cosmid SPCC736, EM:AL023705 S. pombe chromosome 3" ;
chromosome3 GeneDB 3'-UTR 312687 312816 . + . mRNA SPCC553.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC553.01c" ; systematic_id "SPCC553.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 313147 313182 . + . mRNA SPCC736.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.02" ; systematic_id "SPCC736.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 313183 314043 . + . mRNA SPCC736.02 ; db_xref "SPD:11/11E06" ; systematic_id "SPCC736.02" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC736.02" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 313183 314043 . + . mRNA SPCC736.02 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 314044 314135 . + . mRNA SPCC736.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.02" ; systematic_id "SPCC736.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 314135 314363 . - . mRNA SPCC736.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.03c" ; systematic_id "SPCC736.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 314364 315653 . - . mRNA SPCC736.03c ; db_xref "KEGG:MAP00400; ||| KEGG:MAP00970; ||| SPD:22/22D04" ; systematic_id "SPCC736.03c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR047W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004826; phenylalanine-tRNA ligase activity
GO:0006432; phenylalanyl-tRNA aminoacylation" ; gene "SPCC736.03c" ; product "mitochondrial phenylalanyl-tRNA synthetase (predicted)" ; EC_number "6.1.1.20" ;
chromosome3 GeneDB CDS 314364 315653 . - . mRNA SPCC736.03c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 315652 315840 . - . mRNA SPCC736.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.03c" ; systematic_id "SPCC736.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 316061 316724 . - . mRNA SPCC736.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.04c" ; systematic_id "SPCC736.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 316725 317852 . - . mRNA SPCC736.04c ; systematic_id "SPCC736.04c" ; colour "2" ; gene "gma12 ||| SPCC736.04c" ; Alias "gma12" ; db_xref "SPD:17/17G02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7522655; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0042125; protein amino acid galactosylation
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0006493; protein amino acid O-linked glycosylation
GO:0006487; protein amino acid N-linked glycosylation
GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity" ; primary_name "gma12" ; product "alpha-1,2-galactosyltransferase Gma12" ; EC_number "2.4.1.-" ;
chromosome3 GeneDB CDS 316725 317852 . - . mRNA SPCC736.04c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 317851 318646 . - . mRNA SPCC736.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.04c" ; systematic_id "SPCC736.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 320617 321523 . + . mRNA SPCC736.05 ; systematic_id "SPCC736.05" ; colour "12" ; gene "SPCC736.05 ||| wtf7" ; db_xref "SPD:13/13G05" ; Alias "wtf7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf7" ; product "wtf element Wtf7" ;
chromosome3 GeneDB CDS 320617 320755 . + . mRNA SPCC736.05 ; colour "12" ;
chromosome3 GeneDB CDS 320964 321335 . + . mRNA SPCC736.05 ; colour "12" ;
chromosome3 GeneDB CDS 321387 321523 . + . mRNA SPCC736.05 ; colour "12" ;
chromosome3 GeneDB misc_feature 320756 320761 . + . misc_feature unknown_243 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 320941 320963 . + . misc_feature unknown_244 ; colour "6" ; note "ctaatattttttttctttttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 321336 321341 . + . misc_feature unknown_245 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 321375 321386 . + . misc_feature unknown_246 ; colour "6" ; note "ttaacttaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_RNA 322430 322711 . + . misc_RNA SPNCRNA.462 ; db_xref "PMID:18488015" ; synonym "SPNG2101" ; systematic_id "SPNCRNA.462" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 322550 323031 . + . mRNA SPCC736.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.06" ; systematic_id "SPCC736.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 323032 324867 . + . mRNA SPCC736.06 ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:46/46A03" ; systematic_id "SPCC736.06" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004815; aspartate-tRNA ligase activity
GO:0000049; tRNA binding
GO:0006422; aspartyl-tRNA aminoacylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL104W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; gene "SPCC736.06" ; product "mitochondrial aspartate-tRNA ligase (predicted)" ;
chromosome3 GeneDB CDS 323032 324867 . + . mRNA SPCC736.06 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 324868 325081 . + . mRNA SPCC736.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.06" ; systematic_id "SPCC736.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 324921 327094 . - . mRNA SPCC736.07c ; db_xref "SPD:37/37G09" ; systematic_id "SPCC736.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL023W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0001731; formation of translation preinitiation complex" ; gene "SPCC736.07c" ; product "unconventional prefoldin involved in translation initiation (predicted)" ;
chromosome3 GeneDB CDS 324921 326872 . - . mRNA SPCC736.07c ; colour "7" ;
chromosome3 GeneDB CDS 326947 327094 . - . mRNA SPCC736.07c ; colour "7" ;
chromosome3 GeneDB misc_feature 326873 326894 . - . misc_feature unknown_247 ; colour "6" ; note "ctaattgctaatgaaaatccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 326941 326946 . - . misc_feature unknown_248 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 327093 327225 . - . mRNA SPCC736.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.07c" ; systematic_id "SPCC736.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 327391 327541 . + . mRNA SPCC736.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.08" ; systematic_id "SPCC736.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 327542 329461 . + . mRNA SPCC736.08 ; literature "PMID:19101542" ; systematic_id "SPCC736.08" ; colour "2" ; gene "SPCC736.08" ; Alias "cbf11" ; db_xref "SPD:26/26G06" ; GO "GO:0005634; nucleus
GO:0043565; sequence-specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016563; transcriptional activator activity
GO:0022408; negative regulation of cell-cell adhesion
GO:0010812; negative regulation of cell-substrate adhesion
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0032955; regulation of barrier septum formation
GO:0010590; regulation of cell separation during cytokinesis
GO:0051783; regulation of nuclear division" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=name description, C promoter element Binding Factor; cv=name_description; date=20070712 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DNA binding specificity, binds CSL response element 5'-GTG[G/A]GAA-3'; qualifier=in_vitro; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, cut; qualifier=deletion; cv=phenotype; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, cytokinesis defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, sensitive to cold; db_xref=PMID:19101542; qualifier=deletion; cv=phenotype; date=20090108 ||| term=phenotype, adhesion defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, high-frequency diploidization in heterothallic strains; db_xref=PMID:19101542; qualifier=deletion; cv=phenotype; date=20090108 ||| term=phenotype, colony morphology defects; cv=phenotype; qualifier=deletion; db_xref=PMID:19101542; date=20090108" ; primary_name "cbf11" ; product "CBF1/Su(H)/LAG-1 family transcription factor Cbf11" ;
chromosome3 GeneDB CDS 327542 327623 . + . mRNA SPCC736.08 ; colour "2" ;
chromosome3 GeneDB CDS 327702 329461 . + . mRNA SPCC736.08 ; colour "2" ;
chromosome3 GeneDB misc_feature 327624 327629 . + . misc_feature unknown_249 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 327681 327701 . + . misc_feature unknown_250 ; colour "6" ; note "tagctaacggatttttctag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 329462 329647 . + . mRNA SPCC736.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.08" ; systematic_id "SPCC736.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 329593 329748 . - . mRNA SPCC736.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.09c" ; systematic_id "SPCC736.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 329749 330444 . - . mRNA SPCC736.09c ; db_xref "SPD:08/08B07" ; systematic_id "SPCC736.09c" ; colour "2" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0006259; DNA metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:18062930; date=20080829 ||| term=misc, undergoes depletion in translin deficient cells via a translin-dependent proteasome independent pathway; db_xref=PMID:18062930; cv=misc; date=20080829 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TSNAX ortholog; date=20100227" ; gene "SPCC736.09c" ; product "TRAX" ;
chromosome3 GeneDB CDS 329749 330444 . - . mRNA SPCC736.09c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 330443 330581 . - . mRNA SPCC736.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.09c" ; systematic_id "SPCC736.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 331228 331300 . - . tRNA SPCTRNAPHE.04 ; systematic_id "SPCTRNAPHE.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033459; GAA codon-amino acid adaptor activity" ; gene "SPCTRNAPHE.04" ; product "tRNA Phenylalanine" ; note "tRNA Phe anticodon GAA, Cove score 69.56" ;
chromosome3 GeneDB 3'-UTR 331571 332024 . - . mRNA SPCC736.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.10c" ; systematic_id "SPCC736.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 332025 332483 . - . mRNA SPCC736.10c ; systematic_id "SPCC736.10c" ; colour "7" ; gene "SPCC736.10c ||| mrps8" ; Alias "mrps8" ; db_xref "SPD:04/04B02" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR158W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mrps8" ; product "mitochondrial ribosomal protein subunit S8 (predicted)" ;
chromosome3 GeneDB CDS 332025 332483 . - . mRNA SPCC736.10c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 332482 332618 . - . mRNA SPCC736.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.10c" ; systematic_id "SPCC736.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 332801 332905 . + . misc_RNA SPNCRNA.463 ; db_xref "PMID:18488015" ; synonym "SPNG2105" ; systematic_id "SPNCRNA.463" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB misc_RNA 333503 333624 . + . misc_RNA SPNCRNA.464 ; db_xref "PMID:18488015" ; synonym "SPNG2106" ; systematic_id "SPNCRNA.464" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 334103 334136 . + . mRNA SPCC736.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.11" ; systematic_id "SPCC736.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 334137 337012 . + . mRNA SPCC736.11 ; systematic_id "SPCC736.11" ; colour "2" ; gene "ago1 ||| csp9 ||| SPCC736.11" ; Alias "ago1" ; db_xref "SPD:29/29F08" ; synonym "csp9" ; GO "GO:0033167; ARC complex
GO:0030958; RITS complex
GO:0005721; centric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0090052; regulation of chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0000070; mitotic sister chromatid segregation
GO:0051570; regulation of histone H3-K9 methylation
GO:0031048; small RNA-mediated chromatin silencing
GO:0033168; RNA interference, conversion of ds siRNA to ss siRNA
GO:0005515; protein binding
GO:0006808; regulation of nitrogen utilization
GO:0010553; negative regulation of gene specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=PAZ domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12733640; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=complementation, functionally complemented by human hAGO2; db_xref=PMID:14699070; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=phenotype, siRNAs homologous to outer repeats undetectable; cv=phenotype; date=20100318 ||| term=phenotype, growth defect, slow growth with ammonia nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=phenotype, growth defect, normal growth with proline nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=gene expression, transcriptionally represses per1; db_xref=PMID:20404084; date=20100504" ; primary_name "ago1" ; product "argonaute" ;
chromosome3 GeneDB CDS 334137 334265 . + . mRNA SPCC736.11 ; colour "2" ;
chromosome3 GeneDB CDS 334637 337012 . + . mRNA SPCC736.11 ; colour "2" ;
chromosome3 GeneDB misc_feature 334266 334271 . + . misc_feature unknown_251 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 334618 334636 . + . misc_feature unknown_252 ; colour "6" ; note "ttaacgccttttgttgtag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 337013 337070 . + . mRNA SPCC736.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.11" ; systematic_id "SPCC736.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 337829 339567 . - . mRNA SPCC736.12c ; systematic_id "SPCC736.12c" ; colour "2" ; db_xref "SPD:44/44H11" ; Alias "mmi1" ; GO "GO:0033620; Mei2 nuclear dot
GO:0003723; RNA binding
GO:0003723; RNA binding
GO:0003729; mRNA binding
GO:0005515; protein binding
GO:0033621; mRNA catabolic process, meiosis- specific transcripts
GO:0045835; negative regulation of meiosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR374C; date=19700101 ||| term=name description, Meiotic mRNA Interception; cv=name_description; db_xref=PMID:16823445; date=20071011 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is meu26; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is crs1; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is mug9; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is rec8; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is bqt1; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is mug1; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is ssm4; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is mug1; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is spo5; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is rec25; qualifier=mRNA; db_xref=PMID:16823445; date=20100123" ; primary_name "mmi1" ; product "YTH family protein Mmi1" ;
chromosome3 GeneDB CDS 337829 337985 . - . mRNA SPCC736.12c ; colour "2" ;
chromosome3 GeneDB CDS 338030 338178 . - . mRNA SPCC736.12c ; colour "2" ;
chromosome3 GeneDB CDS 338232 338347 . - . mRNA SPCC736.12c ; colour "2" ;
chromosome3 GeneDB CDS 338395 339354 . - . mRNA SPCC736.12c ; colour "2" ;
chromosome3 GeneDB CDS 339483 339567 . - . mRNA SPCC736.12c ; colour "2" ;
chromosome3 GeneDB misc_feature 338179 338193 . - . misc_feature unknown_253 ; colour "6" ; note "ctaacactttaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 338226 338231 . - . misc_feature unknown_254 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 338348 338359 . - . misc_feature unknown_255 ; colour "6" ; note "ctaacaacttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 338389 338394 . - . misc_feature unknown_256 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 339355 339371 . - . misc_feature unknown_257 ; colour "6" ; note "ctaaccaccttatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 339477 339482 . - . misc_feature unknown_258 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 340645 340768 . - . mRNA SPCC736.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.13" ; systematic_id "SPCC736.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 340769 341788 . - . mRNA SPCC736.13 ; db_xref "SPD:15/15C04" ; systematic_id "SPCC736.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR246C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC736.13" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB CDS 340769 341788 . - . mRNA SPCC736.13 ; colour "10" ;
chromosome3 GeneDB 5'-UTR 341787 342076 . - . mRNA SPCC736.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.13" ; systematic_id "SPCC736.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 342900 343033 . + . mRNA SPCC736.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.14" ; systematic_id "SPCC736.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 343034 345949 . + . mRNA SPCC736.14 ; systematic_id "SPCC736.14" ; colour "2" ; gene "dis1 ||| SPCC736.14" ; Alias "dis1" ; db_xref "SPD:29/29G02" ; GO "GO:0005816; spindle pole body
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0000819; sister chromatid segregation
GO:0007017; microtubule-based process
GO:0015630; microtubule cytoskeleton
GO:0008017; microtubule binding
GO:0090307; spindle assembly involved in mitosis
GO:0000778; condensed chromosome kinetochore" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=MAP215/Dis1 family; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YLR045C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:7628693; date=20090213 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "dis1" ; product "microtubule-associated protein Dis1" ;
chromosome3 GeneDB CDS 343034 343084 . + . mRNA SPCC736.14 ; colour "2" ;
chromosome3 GeneDB CDS 343352 345949 . + . mRNA SPCC736.14 ; colour "2" ;
chromosome3 GeneDB misc_RNA 343079 346451 . - . misc_RNA SPNCRNA.578 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.578" ; synonym "SPNG2AF57" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB misc_feature 343085 343090 . + . misc_feature unknown_259 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 343335 343351 . + . misc_feature unknown_260 ; colour "6" ; note "ctaactgatttatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 345946 348691 . + . misc_feature unknown_261 ; note "low complexity gene free region" ;
chromosome3 GeneDB 3'-UTR 345950 346256 . + . mRNA SPCC736.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC736.14" ; systematic_id "SPCC736.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 346947 347564 . + . misc_feature SPNCRNA.465 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.465" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG2109" ;
chromosome3 GeneDB 5'-UTR 348692 349171 . + . mRNA SPCC736.15 ; ID "SPCC736.15" ; systematic_id "SPCC736.15" ; note "mRNA from AU012604" ;
chromosome3 GeneDB CDS_parts 349172 350227 . + . mRNA SPCC736.15 ; db_xref "SPD:16/16B07" ; systematic_id "SPCC736.15" ; GO "GO:0006897; endocytosis
GO:0032126; eisosome
GO:0004860; protein kinase inhibitor activity
GO:0005737; cytoplasm
GO:0005741; mitochondrial outer membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR086C and YPL004C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "7" ; gene "SPCC736.15" ; product "protein kinase inhibitor associated with endocytosis (predicted)" ;
chromosome3 GeneDB CDS 349172 350227 . + . mRNA SPCC736.15 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 350228 351165 . + . mRNA SPCC736.15 ; ID "SPCC736.15" ; systematic_id "SPCC736.15" ; note "mRNA from AU012619" ;
chromosome3 GeneDB misc_feature 351166 354455 . + . misc_feature unknown_262 ; note "low-complexity gene-free region" ;
chromosome3 GeneDB 5'-UTR 354398 354455 . + . mRNA SPCC594.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC594.01" ; systematic_id "SPCC594.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 354456 357252 . + . mRNA SPCC594.01 ; db_xref "SPD:29/29D11" ; systematic_id "SPCC594.01" ; synonym "SPCC736.16" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC594.01 ||| SPCC736.16" ; product "DUF1769 family protein" ;
chromosome3 GeneDB CDS 354456 354756 . + . mRNA SPCC594.01 ; colour "10" ;
chromosome3 GeneDB CDS 354856 354946 . + . mRNA SPCC594.01 ; colour "10" ;
chromosome3 GeneDB CDS 355269 357252 . + . mRNA SPCC594.01 ; colour "10" ;
chromosome3 GeneDB misc_feature 354737 355570 . - . misc_feature unknown_263 ; note "nominal overlap with cosmid SPCC594, EM:AL031523 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 354737 355570 . + . misc_feature unknown_264 ; note "nominal overlap with cosmid SPCC736, EM:AL023705 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 354757 354762 . + . misc_feature unknown_265 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 354838 354855 . + . misc_feature unknown_266 ; colour "6" ; note "ctaattccttttcactag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 354947 354952 . + . misc_feature unknown_267 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 355252 355268 . + . misc_feature unknown_268 ; colour "6" ; note "ttaaccttttgacttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 357253 357640 . + . mRNA SPCC594.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC594.01" ; systematic_id "SPCC594.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 358025 358263 . - . mRNA SPCC594.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC594.02c" ; systematic_id "SPCC594.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 358264 359733 . - . mRNA SPCC594.02c ; db_xref "SPD:23/23F10" ; systematic_id "SPCC594.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL026C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC594.02c" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 358264 359733 . - . mRNA SPCC594.02c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 359732 361107 . - . mRNA SPCC594.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC594.02c" ; systematic_id "SPCC594.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 361356 361682 . + . mRNA SPCC594.03 ; db_xref "SPD:01/01G10" ; systematic_id "SPCC594.03" ; controlled_curation "term=warning, not detected in other Schizos; cv=warning; date=20100325 ||| term=species distribution, sequence orphan; date=20081211 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; colour "8" ; gene "SPCC594.03" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 361356 361682 . + . mRNA SPCC594.03 ; colour "8" ;
chromosome3 GeneDB CDS_parts 362699 363715 . - . mRNA SPCC594.04c ; db_xref "SPD:15/15B08" ; systematic_id "SPCC594.04c" ; colour "7" ; GO "GO:0016229; steroid dehydrogenase activity
GO:0008202; ergosterol metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC594.04c" ; product "steroid oxidoreductase superfamily protein (predicted)" ;
chromosome3 GeneDB CDS 362699 363715 . - . mRNA SPCC594.04c ; colour "7" ;
chromosome3 GeneDB CDS_parts 364204 365478 . - . mRNA SPCC594.05c ; systematic_id "SPCC594.05c" ; colour "2" ; gene "spp1 ||| spf1 ||| SPCC594.05c" ; Alias "spf1" ; db_xref "SPD:20/20D08" ; synonym "spp1" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0000790; nuclear chromatin
GO:0051569; regulation of histone H3-K4 methylation
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=orthologous to S. cerevisiae YPL138C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene name conflict; date=20100723" ; primary_name "spf1" ; product "Set1C PHD Finger protein Spf1" ;
chromosome3 GeneDB CDS 364204 365478 . - . mRNA SPCC594.05c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 365836 365927 . - . mRNA SPCC594.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC594.06c" ; systematic_id "SPCC594.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 365928 366989 . - . mRNA SPCC594.06c ; db_xref "SPD:16/16C07" ; systematic_id "SPCC594.06c" ; colour "7" ; GO "GO:0035091; phosphoinositide binding
GO:0005484; SNAP receptor activity
GO:0006896; Golgi to vacuole transport
GO:0006906; vesicle fusion
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC594.06c" ; product "vacuolar SNARE Vam7 (predicted)" ;
chromosome3 GeneDB CDS 365928 366917 . - . mRNA SPCC594.06c ; colour "7" ;
chromosome3 GeneDB CDS 366954 366989 . - . mRNA SPCC594.06c ; colour "7" ;
chromosome3 GeneDB misc_feature 366918 366938 . - . misc_feature unknown_269 ; colour "6" ; note "ttaatttttacttacaactag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 366948 366953 . - . misc_feature unknown_270 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 366988 366991 . - . mRNA SPCC594.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC594.06c" ; systematic_id "SPCC594.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 367487 368178 . - . mRNA SPCC594.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC594.07c" ; systematic_id "SPCC594.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 368179 368995 . - . mRNA SPCC594.07c ; systematic_id "SPCC594.07c" ; colour "2" ; gene "SPCC594.07c" ; Alias "bqt3" ; db_xref "SPD:10/10E06" ; GO "GO:0005515; protein binding
GO:0045141; meiotic telomere clustering
GO:0005635; nuclear envelope" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, characterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=misc, degradation required to stabilize Bqt4 in the nuclear membrane; db_xref=PMID:19948484; date=20091127" ; primary_name "bqt3" ; product "bouquet formation protein Bqt3" ;
chromosome3 GeneDB CDS 368179 368790 . - . mRNA SPCC594.07c ; colour "2" ;
chromosome3 GeneDB CDS 368840 368995 . - . mRNA SPCC594.07c ; colour "2" ;
chromosome3 GeneDB misc_feature 368791 368808 . - . misc_feature unknown_271 ; colour "6" ; note "ctaacaatggattgaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 368834 368839 . - . misc_feature unknown_272 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 369429 371366 . + . misc_feature unknown_273 ; note "nominal overlap with cosmid SPCC1682 and cosmid SPCC594" ;
chromosome3 GeneDB CDS_parts 371230 371677 . + . mRNA SPCC1682.01 ; systematic_id "SPCC1682.01" ; colour "7" ; gene "qcr9 ||| SPCC1682.01" ; Alias "qcr9" ; db_xref "SPD:03/03H07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR183C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750; mitochondrial respiratory chain complex III
GO:0016226; iron-sulfur cluster assembly
GO:0009060; aerobic respiration" ; primary_name "qcr9" ; product "ubiquinol-cytochrome-c reductase complex subunit 9 (predicted)" ; EC_number "1.10.2.2" ;
chromosome3 GeneDB CDS 371230 371286 . + . mRNA SPCC1682.01 ; colour "7" ;
chromosome3 GeneDB CDS 371353 371438 . + . mRNA SPCC1682.01 ; colour "7" ;
chromosome3 GeneDB CDS 371498 371546 . + . mRNA SPCC1682.01 ; colour "7" ;
chromosome3 GeneDB CDS 371612 371677 . + . mRNA SPCC1682.01 ; colour "7" ;
chromosome3 GeneDB misc_feature 371287 371292 . + . misc_feature unknown_274 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 371335 371352 . + . misc_feature unknown_275 ; colour "6" ; note "ttaatcaatttcaattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 371439 371444 . + . misc_feature unknown_276 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 371486 371497 . + . misc_feature unknown_277 ; colour "6" ; note "ctaatgttctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 371547 371552 . + . misc_feature unknown_278 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 371597 371611 . + . misc_feature unknown_279 ; colour "6" ; note "ctaacaagacgatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 371678 371885 . + . mRNA SPCC1682.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.01" ; systematic_id "SPCC1682.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 372215 372446 . - . mRNA SPCC1682.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.02c" ; systematic_id "SPCC1682.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 372447 375086 . - . mRNA SPCC1682.02c ; systematic_id "SPCC1682.02c" ; colour "2" ; gene "mcm3 ||| SPCC1682.02c" ; Alias "mcm3" ; db_xref "SPD:38/38G03" ; GO "GO:0006270; DNA replication initiation
GO:0042555; MCM complex
GO:0000084; S phase of mitotic cell cycle
GO:0005656; pre-replicative complex
GO:0006271; DNA strand elongation during DNA replication
GO:0004003; ATP-dependent DNA helicase activity
GO:0031261; DNA replication preinitiation complex
GO:0031390; nuclear replication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9705504; date=20100708 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=orthologous to S. cerevisiae YEL032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mcm3" ; product "MCM complex subunit Mcm3" ;
chromosome3 GeneDB CDS 372447 375086 . - . mRNA SPCC1682.02c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 375085 375297 . - . mRNA SPCC1682.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.02c" ; systematic_id "SPCC1682.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 375517 375964 . - . mRNA SPCC1682.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.03c" ; systematic_id "SPCC1682.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 375965 377882 . - . mRNA SPCC1682.03c ; systematic_id "SPCC1682.03c" ; colour "8" ; gene "mug174 ||| SPCC1682.03c" ; Alias "mug174" ; db_xref "SPD:46/46B07" ; GO "GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan; date=20081211 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug174" ; product "meiotically upregulated gene Mug174" ;
chromosome3 GeneDB CDS 375965 376590 . - . mRNA SPCC1682.03c ; colour "8" ;
chromosome3 GeneDB CDS 376628 377882 . - . mRNA SPCC1682.03c ; colour "8" ;
chromosome3 GeneDB misc_feature 376591 376602 . - . misc_feature unknown_280 ; colour "6" ; note "ctaacttagtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 376622 376627 . - . misc_feature unknown_281 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 377881 378048 . - . mRNA SPCC1682.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.03c" ; systematic_id "SPCC1682.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 378213 378228 . + . mRNA SPCC1682.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.04" ; systematic_id "SPCC1682.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 378229 378925 . + . mRNA SPCC1682.04 ; systematic_id "SPCC1682.04" ; colour "2" ; gene "cdc31 ||| SPCC1682.04" ; Alias "cdc31" ; db_xref "SPD:08/08B10" ; GO "GO:0005825; half bridge of spindle pole body
GO:0005509; calcium ion binding
GO:0005198; structural molecule activity
GO:0034613; cellular protein localization
GO:0030474; spindle pole body duplication
GO:0007096; regulation of exit from mitosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12857865; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance|deletion; db_xref=PMID:12857865; date=20100630 ||| term=phenotype, cut; qualifier=deletion; db_xref=PMID:12857865; date=20100630 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YOR257W; date=19700101 ||| term=human CETN3 ortholog; db_xref=UniProtKB:O15182; date=20080624 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100805" ; primary_name "cdc31" ; product "centrin" ;
chromosome3 GeneDB CDS 378229 378523 . + . mRNA SPCC1682.04 ; colour "2" ;
chromosome3 GeneDB CDS 378690 378925 . + . mRNA SPCC1682.04 ; colour "2" ;
chromosome3 GeneDB misc_feature 378524 378529 . + . misc_feature unknown_282 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 378595 379064 . - . mRNA SPCC1682.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.05c" ; systematic_id "SPCC1682.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 378676 378689 . + . misc_feature unknown_283 ; colour "6" ; note "ctaattagatatag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 379065 381034 . - . mRNA SPCC1682.05c ; systematic_id "SPCC1682.05c" ; colour "7" ; gene "SPCC1682.05c ||| srp68" ; Alias "srp68" ; db_xref "SPD:27/27B11" ; GO "GO:0030942; endoplasmic reticulum signal peptide binding
GO:0006617; SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
GO:0005786; signal recognition particle (sensu Eukaryota)" ; controlled_curation "term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL243W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "srp68" ; product "signal recognition particle subunit (predicted)" ;
chromosome3 GeneDB CDS 379065 379652 . - . mRNA SPCC1682.05c ; colour "7" ;
chromosome3 GeneDB CDS 379728 380604 . - . mRNA SPCC1682.05c ; colour "7" ;
chromosome3 GeneDB CDS 380660 380922 . - . mRNA SPCC1682.05c ; colour "7" ;
chromosome3 GeneDB CDS 380969 381034 . - . mRNA SPCC1682.05c ; colour "7" ;
chromosome3 GeneDB misc_feature 379653 379669 . - . misc_feature unknown_284 ; colour "6" ; note "ctaatagattgctatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 379722 379727 . - . misc_feature unknown_285 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 380605 380630 . - . misc_feature unknown_286 ; colour "6" ; note "ctaattatgtacttcttttgttatag, splice branch and accept or" ;
chromosome3 GeneDB misc_feature 380654 380659 . - . misc_feature unknown_287 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 380923 380933 . - . misc_feature unknown_288 ; colour "6" ; note "ttaacttgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 380963 380968 . - . misc_feature unknown_289 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB LTR 381641 382003 . - . LTR unknown_290 ; note "Tf1-type LTR" ;
chromosome3 GeneDB 5'-UTR 382225 382376 . + . mRNA SPCC1682.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.06" ; systematic_id "SPCC1682.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 382377 383138 . + . mRNA SPCC1682.06 ; systematic_id "SPCC1682.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPBC18H10.18C; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1682.06" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 382377 382767 . + . mRNA SPCC1682.06 ; colour "8" ;
chromosome3 GeneDB CDS 382813 383138 . + . mRNA SPCC1682.06 ; colour "8" ;
chromosome3 GeneDB misc_feature 382768 382773 . + . misc_feature unknown_291 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 382798 382812 . + . misc_feature unknown_292 ; colour "6" ; note "ctaacgattttctag, splice branch and acceptor" ;
chromosome3 GeneDB 5'-UTR 384207 384472 . + . mRNA SPCC1682.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.07" ; systematic_id "SPCC1682.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 384473 385868 . + . mRNA SPCC1682.07 ; systematic_id "SPCC1682.07" ; colour "2" ; gene "ssl1 ||| SPCC1682.07" ; Alias "ssl1" ; obsolete_name "tfh47" ; db_xref "SPD:21/21F04" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0006281; DNA repair
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YLR005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human GTF2H2 ortholog; date=20110113" ; primary_name "ssl1" ; product "transcription factor TFIIH complex subunit Ssl1" ;
chromosome3 GeneDB CDS 384473 384690 . + . mRNA SPCC1682.07 ; colour "2" ;
chromosome3 GeneDB CDS 384821 385868 . + . mRNA SPCC1682.07 ; colour "2" ;
chromosome3 GeneDB misc_feature 384691 384696 . + . misc_feature unknown_293 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB intron 384731 384820 . + . intron SPCC1682.07 ; systematic_id "SPCC1682.07" ; note "Intron confirmed by EST" ;
chromosome3 GeneDB misc_feature 384799 384820 . + . misc_feature unknown_294 ; colour "6" ; note "ctaacttgtcaatctgatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 386020 386123 . - . mRNA SPCC1682.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.08c" ; systematic_id "SPCC1682.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 386124 388235 . - . mRNA SPCC1682.08c ; systematic_id "SPCC1682.08c" ; colour "10" ; gene "mcp2 ||| SPCC1682.08c" ; Alias "mcp2" ; db_xref "SPD:27/27H11" ; GO "GO:0003723; RNA binding
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=similar to N. crassa B17C10.150; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mcp2" ; product "RNA-binding protein Mcp2" ; reserved_name "mcp2" ;
chromosome3 GeneDB CDS 386124 388235 . - . mRNA SPCC1682.08c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 388234 388386 . - . mRNA SPCC1682.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.08c" ; systematic_id "SPCC1682.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 388528 389199 . + . misc_RNA SPNCRNA.579 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.579" ; synonym "SPNG2AF63" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB 3'-UTR 388550 388701 . - . mRNA SPCC1682.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.09c" ; systematic_id "SPCC1682.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 388702 389824 . - . mRNA SPCC1682.09c ; db_xref "SPD:43/43G12" ; systematic_id "SPCC1682.09c" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0001409; guanine nucleotide transporter activity
GO:0001408; guanine nucleotide transport
GO:0000002; mitochondrial genome maintenance
GO:0006879; iron ion homeostasis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL198C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=mitochondrial carrier; date=20100901" ; gene "SPCC1682.09c" ; product "mitochondrial guanine nucleotide transporter (predicted)" ;
chromosome3 GeneDB CDS 388702 389218 . - . mRNA SPCC1682.09c ; colour "7" ;
chromosome3 GeneDB CDS 389318 389412 . - . mRNA SPCC1682.09c ; colour "7" ;
chromosome3 GeneDB CDS 389534 389824 . - . mRNA SPCC1682.09c ; colour "7" ;
chromosome3 GeneDB misc_feature 389219 389230 . - . misc_feature unknown_295 ; colour "6" ; note "ctaacttttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 389312 389317 . - . misc_feature unknown_296 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 389413 389425 . - . misc_feature unknown_297 ; colour "6" ; note "ctaacatgttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 389528 389533 . - . misc_feature unknown_298 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 389823 389870 . - . mRNA SPCC1682.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.09c" ; systematic_id "SPCC1682.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 390696 390746 . + . mRNA SPCC1682.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.10" ; systematic_id "SPCC1682.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 390747 391765 . + . mRNA SPCC1682.10 ; systematic_id "SPCC1682.10" ; colour "7" ; gene "rpn8 ||| SPCC1682.10" ; Alias "rpn8" ; db_xref "SPD:15/15B11" ; GO "GO:0005634; nucleus
GO:0008541; proteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle
GO:0004843; ubiquitin-specific protease activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR261C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpn8" ; product "19S proteasome regulatory subunit Rpn8 (predicted)" ;
chromosome3 GeneDB CDS 390747 390797 . + . mRNA SPCC1682.10 ; colour "7" ;
chromosome3 GeneDB CDS 390842 391765 . + . mRNA SPCC1682.10 ; colour "7" ;
chromosome3 GeneDB misc_feature 390798 390803 . + . misc_feature unknown_299 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 390827 390841 . + . misc_feature unknown_300 ; colour "6" ; note "ttaaccattggttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 391766 391962 . + . mRNA SPCC1682.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.10" ; systematic_id "SPCC1682.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 392127 392322 . - . mRNA SPCC1682.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.11c" ; systematic_id "SPCC1682.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 392323 394184 . - . mRNA SPCC1682.11c ; systematic_id "SPCC1682.11c" ; colour "7" ; gene "SPCC1682.11c" ; note "PNS1 is not present in S288C" ; db_xref "SPD:26/26C04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=orthologous to S. cerevisiae PNS1; date=20100901" ; GO "GO:0055085; transmembrane transport
GO:0022857; transmembrane transporter activity" ; product "choline transmembrane transporter family protein (predicted)" ;
chromosome3 GeneDB CDS 392323 392434 . - . mRNA SPCC1682.11c ; colour "7" ;
chromosome3 GeneDB CDS 392486 393025 . - . mRNA SPCC1682.11c ; colour "7" ;
chromosome3 GeneDB CDS 393075 394134 . - . mRNA SPCC1682.11c ; colour "7" ;
chromosome3 GeneDB CDS 394172 394184 . - . mRNA SPCC1682.11c ; colour "7" ;
chromosome3 GeneDB misc_feature 392435 392449 . - . misc_feature unknown_301 ; colour "6" ; note "ctaactttttcacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 392480 392485 . - . misc_feature unknown_302 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 393026 393040 . - . misc_feature unknown_303 ; colour "6" ; note "ctaacacaattgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 393069 393074 . - . misc_feature unknown_304 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 394135 394145 . - . misc_feature unknown_305 ; colour "6" ; note "ctaacgagtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 394166 394171 . - . misc_feature unknown_306 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 394183 394270 . - . mRNA SPCC1682.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.11c" ; systematic_id "SPCC1682.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 394354 394798 . + . misc_RNA SPNCRNA.02 ; systematic_id "SPNCRNA.02" ; gene "prl02 ||| prl2 ||| SPNCRNA.02" ; db_xref "PMID:12597277 ||| EMBL:AB084814" ; Alias "prl2" ; synonym "prl02" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl2" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB 3'-UTR 394822 394882 . - . mRNA SPCC1682.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.12c" ; systematic_id "SPCC1682.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 394883 396256 . - . mRNA SPCC1682.12c ; systematic_id "SPCC1682.12c" ; colour "2" ; gene "SPCC1682.12c ||| ubp16" ; db_xref "SPD:21/21C10" ; Alias "ubp16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL186W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20101004 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human USP36 and USP42 ortholog; date=2101004" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005730; nucleolus" ; primary_name "ubp16" ; product "ubiquitin C-terminal hydrolase Ubp16" ;
chromosome3 GeneDB CDS 394883 396256 . - . mRNA SPCC1682.12c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 396255 397130 . - . mRNA SPCC1682.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.12c" ; systematic_id "SPCC1682.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 399004 399079 . + . mRNA SPCC1682.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.13" ; systematic_id "SPCC1682.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 399080 399898 . + . mRNA SPCC1682.13 ; systematic_id "SPCC1682.13" ; colour "2" ; gene "laf2 ||| SPCC1682.13" ; Alias "laf2" ; db_xref "SPD:10/10E09" ; GO "GO:0006338; chromatin remodeling
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0003677; DNA binding
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded
GO:0016575; histone deacetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL034C and YOR338W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "laf2" ; product "Clr6 associated factor 2, Laf2" ;
chromosome3 GeneDB CDS 399080 399898 . + . mRNA SPCC1682.13 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 399899 400433 . + . mRNA SPCC1682.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.13" ; systematic_id "SPCC1682.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 400761 400766 . + . mRNA SPCC1682.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.14" ; systematic_id "SPCC1682.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 400767 401348 . + . mRNA SPCC1682.14 ; systematic_id "SPCC1682.14" ; colour "2" ; gene "rpl1902 ||| rpl19-2 ||| SPCC1682.14" ; Alias "rpl1902" ; db_xref "SPD:06/06C10" ; synonym "rpl19-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR084C-A and YBL027W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1902" ; product "60S ribosomal protein L19" ;
chromosome3 GeneDB CDS 400767 401348 . + . mRNA SPCC1682.14 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 401349 401421 . + . mRNA SPCC1682.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.14" ; systematic_id "SPCC1682.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 401970 402248 . + . mRNA SPCC1682.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.15" ; systematic_id "SPCC1682.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 402249 404498 . + . mRNA SPCC1682.15 ; systematic_id "SPCC1682.15" ; colour "10" ; gene "SPCC1682.15 ||| mug122" ; Alias "mug122" ; db_xref "SPD:28/28B01" ; GO "GO:0035091; phosphoinositide binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20071106 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug122" ; product "PX/PXA domain protein" ;
chromosome3 GeneDB CDS 402249 404498 . + . mRNA SPCC1682.15 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 404499 404833 . + . mRNA SPCC1682.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.15" ; systematic_id "SPCC1682.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 405602 405611 . + . mRNA SPCC1682.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.16" ; systematic_id "SPCC1682.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 405612 407251 . + . mRNA SPCC1682.16 ; systematic_id "SPCC1682.16" ; colour "7" ; gene "rpt4 ||| SPCC1682.16" ; Alias "rpt4" ; obsolete_name "SPCC306.01" ; db_xref "SPD:06/06C02" ; GO "GO:0005634; nucleus
GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YOR259C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpt4" ; product "19S proteasome regulatory subunit Rpt4 (predicted)" ;
chromosome3 GeneDB CDS 405612 405829 . + . mRNA SPCC1682.16 ; colour "7" ;
chromosome3 GeneDB CDS 406303 407251 . + . mRNA SPCC1682.16 ; colour "7" ;
chromosome3 GeneDB misc_feature 405830 405835 . + . misc_feature unknown_307 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 406289 406302 . + . misc_feature unknown_308 ; colour "6" ; note "ctaacctattctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 406698 406832 . + . misc_feature unknown_309 ; note "nominal overlap with cosmid SPCC1682 and cosmid SPCC306" ;
chromosome3 GeneDB 3'-UTR 407252 407471 . + . mRNA SPCC1682.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1682.16" ; systematic_id "SPCC1682.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 407598 408243 . - . mRNA SPCC306.02c ; ID "SPCC306.02c" ; systematic_id "SPCC306.02c" ; note "mRNA from AU008065" ;
chromosome3 GeneDB CDS_parts 408244 408823 . - . mRNA SPCC306.02c ; db_xref "SPD:06/06C08" ; systematic_id "SPCC306.02c" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle
GO:0017137; Rab GTPase binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL044W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC306.02c" ; product "Rab GTPase binding involved in ER to Golgi vesicle transport (predicted)" ;
chromosome3 GeneDB CDS 408244 408693 . - . mRNA SPCC306.02c ; colour "7" ;
chromosome3 GeneDB CDS 408758 408823 . - . mRNA SPCC306.02c ; colour "7" ;
chromosome3 GeneDB misc_feature 408694 408710 . - . misc_feature unknown_310 ; colour "6" ; note "ctaacgcaaaatggtag, splice branch and acceptor" ;
chromosome3 GeneDB intron 408694 408757 . - . intron SPCC306.02c ; systematic_id "SPCC306.02c" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 408752 408757 . - . misc_feature unknown_311 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 408822 408845 . - . mRNA SPCC306.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.02c" ; systematic_id "SPCC306.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 409505 409838 . - . mRNA SPCC306.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.03c" ; systematic_id "SPCC306.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 409839 412067 . - . mRNA SPCC306.03c ; systematic_id "SPCC306.03c" ; colour "2" ; gene "cnd2 ||| SPCC306.03c" ; Alias "cnd2" ; db_xref "SPD:38/38A10" ; GO "GO:0000796; condensin complex
GO:0007076; mitotic chromosome condensation
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0006281; DNA repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cut; qualifier=deletion; db_xref=PMID:10485849; date=20100917 ||| term=orthologous to S. cerevisiae YBL097W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human NCAPH ortholog; date=19700101" ; primary_name "cnd2" ; product "condensin complex non-SMC subunit Cnd2" ;
chromosome3 GeneDB CDS 409839 412067 . - . mRNA SPCC306.03c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 412476 412764 . - . mRNA SPCC306.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.04c" ; systematic_id "SPCC306.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 412765 415527 . - . mRNA SPCC306.04c ; systematic_id "SPCC306.04c" ; colour "2" ; gene "set1 ||| SPCC306.04c" ; Alias "set1" ; db_xref "SPD:39/39B01" ; synonym "kmt2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12589755; date=19700101 ||| term=orthologous to S. cerevisiae YHR119W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=misc, Set1 mediated H3 K4 methylation is preferentially enriched at euchromatic loci; db_xref=PMID:12193658; cv=misc; date=20070704 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0048188; COMPASS complex
GO:0003723; RNA binding
GO:0042800; histone lysine N-methyltransferase activity (H3-K4 specific)
GO:0018024; histone-lysine N-methyltransferase activity
GO:0000077; DNA damage checkpoint
GO:0006338; chromatin remodeling
GO:0006342; chromatin silencing
GO:0016571; histone methylation
GO:0000723; telomere maintenance
GO:0000790; nuclear chromatin" ; primary_name "set1" ; product "histone lysine methyltransferase Set1" ;
chromosome3 GeneDB CDS 412765 415527 . - . mRNA SPCC306.04c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 415526 415886 . - . mRNA SPCC306.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.04c" ; systematic_id "SPCC306.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 416164 416423 . - . mRNA SPCC306.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.05c" ; systematic_id "SPCC306.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 416424 417577 . - . mRNA SPCC306.05c ; systematic_id "SPCC306.05c" ; colour "2" ; gene "ins1 ||| SPCC306.05c" ; Alias "ins1" ; db_xref "SPD:18/18C02" ; GO "GO:0032936; SREBP-SCAP complex
GO:0071458; endoplasmic reticulum membrane, cytosolic_side
GO:0006994; activation of transcription in response to sterol depletion
GO:0071456; cellular response to hypoxia
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0006992; sterol depletion response, sterol regulatory element binding-protein cleavage
GO:0005515; protein binding
GO:0010895; negative regulation of ergosterol biosynthetic process
GO:0035437; maintenance of protein localization in endoplasmic reticulum" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, increased HMG-CoA reductase activity; db_xref=PMID:19041767; cv=phenotype; qualifier=deletion; date=20090206" ; primary_name "ins1" ; product "INSIG domain protein" ;
chromosome3 GeneDB CDS 416424 416532 . - . mRNA SPCC306.05c ; colour "2" ;
chromosome3 GeneDB CDS 416616 416779 . - . mRNA SPCC306.05c ; colour "2" ;
chromosome3 GeneDB CDS 417005 417577 . - . mRNA SPCC306.05c ; colour "2" ;
chromosome3 GeneDB misc_feature 416533 416545 . - . misc_feature unknown_312 ; colour "6" ; note "ctaacaaatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 416610 416615 . - . misc_feature unknown_313 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 416780 416794 . - . misc_feature unknown_314 ; colour "6" ; note "ctaacttatctctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 416999 417004 . - . misc_feature unknown_315 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 417576 417647 . - . mRNA SPCC306.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.05c" ; systematic_id "SPCC306.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 418140 418475 . - . mRNA SPCC306.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.06c" ; systematic_id "SPCC306.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 418476 419473 . - . mRNA SPCC306.06c ; db_xref "SPD:14/14F02" ; systematic_id "SPCC306.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR101C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; colour "7" ; GO "GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0030176; integral to endoplasmic reticulum membrane
GO:0006078; 1,6-beta-glucan biosynthesis" ; gene "SPCC306.06c" ; product "ER membrane protein, BIG1 family (predicted)" ;
chromosome3 GeneDB CDS 418476 419319 . - . mRNA SPCC306.06c ; colour "7" ;
chromosome3 GeneDB CDS 419382 419473 . - . mRNA SPCC306.06c ; colour "7" ;
chromosome3 GeneDB misc_feature 419320 419333 . - . misc_feature unknown_316 ; colour "6" ; note "ctaactaaaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 419376 419381 . - . misc_feature unknown_317 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 419472 419518 . - . mRNA SPCC306.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.06c" ; systematic_id "SPCC306.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 419790 419999 . - . mRNA SPCC306.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.07c" ; systematic_id "SPCC306.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 420000 421135 . - . mRNA SPCC306.07c ; db_xref "SPD:17/17H06" ; systematic_id "SPCC306.07c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0042273; ribosomal large subunit biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR052W and YKR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC306.07c" ; product "U3 snoRNP-associated protein Cic1/Utp30 family (predicted)" ;
chromosome3 GeneDB CDS 420000 420657 . - . mRNA SPCC306.07c ; colour "7" ;
chromosome3 GeneDB CDS 420879 421012 . - . mRNA SPCC306.07c ; colour "7" ;
chromosome3 GeneDB CDS 421073 421135 . - . mRNA SPCC306.07c ; colour "7" ;
chromosome3 GeneDB misc_feature 420658 420672 . - . misc_feature unknown_318 ; colour "6" ; note "ctaactattttacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 420873 420878 . - . misc_feature unknown_319 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 421013 421030 . - . misc_feature unknown_320 ; colour "6" ; note "cttacaaataatcaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 421067 421072 . - . misc_feature unknown_321 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 421134 421165 . - . mRNA SPCC306.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.07c" ; systematic_id "SPCC306.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 421703 422728 . - . mRNA SPCC306.08c ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00620; ||| KEGG:MAP00630; ||| KEGG:MAP00710; ||| KEGG:MAP00720; ||| SPD:15/15E01" ; systematic_id "SPCC306.08c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006108; malate metabolism
GO:0006099; tricarboxylic acid cycle
GO:0030060; L-malate dehydrogenase activity
GO:0005759; mitochondrial matrix" ; gene "SPCC306.08c" ; product "malate dehydrogenase (predicted)" ; EC_number "1.1.1.37" ;
chromosome3 GeneDB CDS 421703 422728 . - . mRNA SPCC306.08c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 422727 422870 . - . mRNA SPCC306.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.08c" ; systematic_id "SPCC306.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 423752 424546 . - . mRNA SPCC306.09c ; ID "SPCC306.09c" ; systematic_id "SPCC306.09c" ; note "mRNA from SPCAP" ;
chromosome3 GeneDB CDS_parts 424547 426276 . - . mRNA SPCC306.09c ; systematic_id "SPCC306.09c" ; colour "2" ; gene "cap1 ||| cap ||| SPCC306.09c" ; Alias "cap1" ; db_xref "SPD:35/35G03" ; synonym "cap" ; GO "GO:0003779; actin binding
GO:0008092; cytoskeletal protein binding
GO:0007010; cytoskeleton organization and biogenesis
GO:0030437; sporulation (sensu Fungi)
GO:0000747; conjugation with cellular fusion
GO:0009267; cellular response to starvation
GO:0008179; adenylate cyclase binding
GO:0045761; regulation of adenylate cyclase activity
GO:0030479; actin cortical patch" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1550959; date=19700101 ||| term=orthologous to S. cerevisiae YNL138W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:1550959; date=20100712" ; primary_name "cap1" ; product "adenylyl cyclase-associated protein Cap1" ;
chromosome3 GeneDB CDS 424547 426143 . - . mRNA SPCC306.09c ; colour "2" ;
chromosome3 GeneDB CDS 426218 426276 . - . mRNA SPCC306.09c ; colour "2" ;
chromosome3 GeneDB misc_feature 426144 426162 . - . misc_feature unknown_322 ; colour "6" ; note "ctaacatttactcatatag, splice branch and acceptor" ;
chromosome3 GeneDB intron 426144 426217 . - . intron SPCC306.09c ; systematic_id "SPCC306.09c" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 426212 426217 . - . misc_feature unknown_323 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 426277 426353 . - . mRNA SPCC306.09c ; ID "SPCC306.09c" ; systematic_id "SPCC306.09c" ; note "mRNA from SPCAP" ;
chromosome3 GeneDB CDS_parts 427445 428763 . + . mRNA SPCC306.10 ; systematic_id "SPCC306.10" ; colour "12" ; obsolete_name "wtf3-pseudo" ; db_xref "SPD:51/51D12" ; Alias "wtf8" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223 ||| term=warning, gene structure updated; cv=warning; date=20100227 ||| term=warning, non-consensus branch site; cv=warning; date=20100227" ; primary_name "wtf8" ; product "wtf element Wtf8" ;
chromosome3 GeneDB CDS 427445 427583 . + . mRNA SPCC306.10 ; colour "12" ;
chromosome3 GeneDB CDS 427752 427997 . + . mRNA SPCC306.10 ; colour "12" ;
chromosome3 GeneDB CDS 428072 428290 . + . mRNA SPCC306.10 ; colour "12" ;
chromosome3 GeneDB CDS 428336 428527 . + . mRNA SPCC306.10 ; colour "12" ;
chromosome3 GeneDB CDS 428568 428630 . + . mRNA SPCC306.10 ; colour "12" ;
chromosome3 GeneDB CDS 428681 428763 . + . mRNA SPCC306.10 ; colour "12" ;
chromosome3 GeneDB misc_feature 427584 427589 . + . misc_feature unknown_324 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 427739 427751 . + . misc_feature unknown_325 ; colour "6" ; note "ttaatttaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 427998 428003 . + . misc_feature unknown_326 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 428291 428296 . + . misc_feature unknown_327 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 428325 428335 . + . misc_feature unknown_328 ; colour "6" ; note "ctaacacgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 428528 428533 . + . misc_feature unknown_329 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 428555 428567 . + . misc_feature unknown_330 ; colour "6" ; note "ctaaccgtatcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 428631 428636 . + . misc_feature unknown_331 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 428668 428680 . + . misc_feature unknown_332 ; colour "6" ; note "cttacccgactag, splice branch and acceptor" ;
chromosome3 GeneDB 5'-UTR 430465 430787 . + . mRNA SPCC306.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.11" ; systematic_id "SPCC306.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 430788 431639 . + . mRNA SPCC306.11 ; db_xref "SPD:11/11C01" ; systematic_id "SPCC306.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC306.11" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 430788 431639 . + . mRNA SPCC306.11 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 431640 432221 . + . mRNA SPCC306.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC306.11" ; systematic_id "SPCC306.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 432041 432162 . + . misc_feature unknown_333 ; note "nominal overlap with cosmid SPCC306 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 432041 432162 . - . misc_feature unknown_334 ; note "nominal overlap with cosmid SPCC4G3, EM:Z97052 S. pombe chromosome 3" ;
chromosome3 GeneDB 3'-UTR 432331 432394 . - . mRNA SPCC4G3.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.19" ; systematic_id "SPCC4G3.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 432395 434674 . - . mRNA SPCC4G3.19 ; systematic_id "SPCC4G3.19" ; colour "2" ; gene "alp16 ||| SPCC4G3.19" ; Alias "alp16" ; db_xref "SPD:28/28B12" ; GO "GO:0000930; gamma-tubulin complex
GO:0005816; spindle pole body
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0000923; equatorial microtubule organizing center
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; qualifier=deletion; cv=phenotype; date=19700101 ||| term=phenotype, cytoskeletal defects, long cytoplasmic microtubules; db_xref=PMID:12134075; qualifier=deletion; cv=phenotype; date=19700101 ||| term=human hGPC6 ortholog; db_xref=PMID:12134075; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=20070725 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "alp16" ; product "gamma tubulin complex subunit Alp16" ;
chromosome3 GeneDB CDS 432395 434674 . - . mRNA SPCC4G3.19 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 434673 434750 . - . mRNA SPCC4G3.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.19" ; systematic_id "SPCC4G3.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 435907 435936 . - . mRNA SPCC4G3.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.18" ; systematic_id "SPCC4G3.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 435937 438423 . - . mRNA SPCC4G3.18 ; db_xref "SPD:28/28H12" ; systematic_id "SPCC4G3.18" ; colour "7" ; GO "GO:0005634; nucleus
GO:0006364; rRNA processing
GO:0000027; ribosomal large subunit assembly and maintenance
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR197W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC4G3.18" ; product "ribosome biogenesis protein Rix1 (predicted)" ;
chromosome3 GeneDB CDS 435937 438423 . - . mRNA SPCC4G3.18 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 438422 438550 . - . mRNA SPCC4G3.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.18" ; systematic_id "SPCC4G3.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 438715 439063 . - . mRNA SPCC4G3.17 ; ID "SPCC4G3.17" ; systematic_id "SPCC4G3.17" ; note "mRNA from AU011801" ;
chromosome3 GeneDB CDS_parts 439064 439660 . - . mRNA SPCC4G3.17 ; db_xref "SPD:06/06E12" ; systematic_id "SPCC4G3.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL101W and YBR242W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human HDDC2 ortholog; date=20100728" ; colour "10" ; gene "SPCC4G3.17" ; product "HD domain metal dependent phosphohydrolase (predicted)" ;
chromosome3 GeneDB CDS 439064 439660 . - . mRNA SPCC4G3.17 ; colour "10" ;
chromosome3 GeneDB 5'-UTR 439659 439700 . - . mRNA SPCC4G3.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.17" ; systematic_id "SPCC4G3.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 440054 441271 . - . mRNA SPCC4G3.16 ; db_xref "SPD:19/19D06" ; systematic_id "SPCC4G3.16" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0009982; pseudouridine synthase activity
GO:0031119; tRNA pseudouridine synthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL036C and YOL066C; qualifier=C_term; date=19700101 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20080326" ; gene "SPCC4G3.16" ; product "CMP deaminase family/ methyltransferase bifunctional enzyme involved in riboflavin biosynthesis and tRNA pseudouridine biosynthesis" ;
chromosome3 GeneDB CDS 440054 441271 . - . mRNA SPCC4G3.16 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 441270 441462 . - . mRNA SPCC4G3.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.16" ; systematic_id "SPCC4G3.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 441550 441588 . + . mRNA SPCC4G3.15c ; ID "SPCC4G3.15c" ; systematic_id "SPCC4G3.15c" ; note "CRUK ccg.O.1777" ;
chromosome3 GeneDB CDS_parts 441589 442696 . + . mRNA SPCC4G3.15c ; systematic_id "SPCC4G3.15c" ; colour "7" ; gene "SPCC4G3.15c ||| not2" ; Alias "not2" ; db_xref "SPD:42/42G05" ; GO "GO:0000175; 3'-5'-exoribonuclease activity
GO:0030015; CCR4-NOT core complex
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000289; poly(A) tail shortening
GO:0006354; RNA elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL165W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "not2" ; product "CCR4-Not complex subunit Not2 (predicted)" ;
chromosome3 GeneDB CDS 441589 441688 . + . mRNA SPCC4G3.15c ; colour "7" ;
chromosome3 GeneDB CDS 441749 442145 . + . mRNA SPCC4G3.15c ; colour "7" ;
chromosome3 GeneDB CDS 442214 442432 . + . mRNA SPCC4G3.15c ; colour "7" ;
chromosome3 GeneDB CDS 442492 442696 . + . mRNA SPCC4G3.15c ; colour "7" ;
chromosome3 GeneDB misc_feature 441689 441694 . + . misc_feature unknown_335 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 441689 441748 . + . intron unknown_336 ; note "confirmed by cDNA" ;
chromosome3 GeneDB misc_feature 441729 441748 . + . misc_feature unknown_337 ; note "ttaacatttatatttataag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 442146 442151 . + . misc_feature unknown_338 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 442200 442213 . + . misc_feature unknown_339 ; colour "6" ; note "ctaaccttttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 442433 442438 . + . misc_feature unknown_340 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 442433 442491 . + . intron SPCC4G3.15c ; systematic_id "SPCC4G3.15c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 442479 442491 . + . misc_feature unknown_341 ; colour "6" ; note "ctaacgtaaacag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 442697 442914 . + . mRNA SPCC4G3.15c ; ID "SPCC4G3.15c" ; systematic_id "SPCC4G3.15c" ; note "mRNA from AU006773" ;
chromosome3 GeneDB 3'-UTR 443001 443169 . - . mRNA SPCC4G3.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.14" ; systematic_id "SPCC4G3.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 443170 444756 . - . mRNA SPCC4G3.14 ; systematic_id "SPCC4G3.14" ; colour "7" ; gene "SPCC4G3.14 ||| mdj1" ; Alias "mdj1" ; db_xref "SPD:25/25E10" ; GO "GO:0030544; Hsp70 protein binding
GO:0006508; proteolysis
GO:0006457; protein folding
GO:0005743; mitochondrial inner membrane
GO:0051082; unfolded protein binding
GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL016C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mdj1" ; product "mitochondrial DNAJ domain protein Mdj1 (predicted)" ;
chromosome3 GeneDB CDS 443170 444756 . - . mRNA SPCC4G3.14 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 444755 445146 . - . mRNA SPCC4G3.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.14" ; systematic_id "SPCC4G3.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 445256 445403 . + . mRNA SPCC4G3.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.13c" ; systematic_id "SPCC4G3.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 445404 446051 . + . mRNA SPCC4G3.13c ; systematic_id "SPCC4G3.13c" ; colour "7" ; gene "SPCC4G3.13c" ; note "putative signal sequence at aa 1-20" ; db_xref "SPD:07/07E01" ; GO "GO:0030433; ER-associated protein catabolism
GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CUE domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR264W and YML101C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "CUE domain protein Cue1/4 family involved in ER associated protein catabolism (predicted)" ;
chromosome3 GeneDB CDS 445404 446051 . + . mRNA SPCC4G3.13c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 446052 446357 . + . mRNA SPCC4G3.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.13c" ; systematic_id "SPCC4G3.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 447034 447263 . + . mRNA SPCC4G3.12c ; ID "SPCC4G3.12c" ; systematic_id "SPCC4G3.12c" ; note "mRNA from AU007931" ;
chromosome3 GeneDB CDS_parts 447264 449729 . + . mRNA SPCC4G3.12c ; db_xref "SPD:28/28G12" ; systematic_id "SPCC4G3.12c" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC4G3.12c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome3 GeneDB CDS 447264 449729 . + . mRNA SPCC4G3.12c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 449730 450041 . + . mRNA SPCC4G3.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.12c" ; systematic_id "SPCC4G3.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 450209 450464 . - . mRNA SPCC4G3.11 ; ID "SPCC4G3.11" ; systematic_id "SPCC4G3.11" ; note "mRNA from AU009371" ;
chromosome3 GeneDB CDS_parts 450465 451415 . - . mRNA SPCC4G3.11 ; systematic_id "SPCC4G3.11" ; colour "10" ; gene "SPCC4G3.11 ||| mug154" ; db_xref "SPD:13/13D04" ; Alias "mug154" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL089W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug154" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 450465 451415 . - . mRNA SPCC4G3.11 ; colour "10" ;
chromosome3 GeneDB 5'-UTR 451416 451666 . - . mRNA SPCC4G3.11 ; ID "SPCC4G3.11" ; systematic_id "SPCC4G3.11" ; note "mRNA from AU009325" ;
chromosome3 GeneDB 5'-UTR 451857 452368 . + . mRNA SPCC4G3.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.10c" ; systematic_id "SPCC4G3.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 452369 454429 . + . mRNA SPCC4G3.10c ; systematic_id "SPCC4G3.10c" ; colour "2" ; gene "rhp42 ||| rhp4b ||| SPCC4G3.10c" ; Alias "rhp42" ; db_xref "SPD:37/37C07" ; synonym "rhp4b" ; GO "GO:0006289; nucleotide-excision repair
GO:0006298; mismatch repair
GO:0000109; nucleotide-excision repair complex
GO:0003684; damaged DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=orthologous to S. cerevisiae YER162C and YDR314C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human XPC ortholog; date=20100217 ||| term=XP-C family; date=20100217" ; primary_name "rhp42" ; product "DNA repair protein Rhp42" ;
chromosome3 GeneDB CDS 452369 454429 . + . mRNA SPCC4G3.10c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 454430 454770 . + . mRNA SPCC4G3.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.10c" ; systematic_id "SPCC4G3.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 455068 455302 . + . mRNA SPCC4G3.09c ; ID "SPCC4G3.09c" ; systematic_id "SPCC4G3.09c" ; note "mRNA from AU009261" ;
chromosome3 GeneDB CDS_parts 455303 457210 . + . mRNA SPCC4G3.09c ; systematic_id "SPCC4G3.09c" ; colour "7" ; gene "SPCC4G3.09c ||| gyp3" ; Alias "gyp3" ; db_xref "SPD:26/26F05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL293W and YOL112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0007015; actin filament organization
GO:0006887; exocytosis
GO:0005737; cytoplasm
GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; primary_name "gyp3" ; product "GTPase activating protein Gyp3 (predicted)" ; reserved_name "gyp3" ;
chromosome3 GeneDB CDS 455303 457210 . + . mRNA SPCC4G3.09c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 457211 457576 . + . mRNA SPCC4G3.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.09c" ; systematic_id "SPCC4G3.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 457795 458099 . - . mRNA SPCC4G3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.08" ; systematic_id "SPCC4G3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 458100 459410 . - . mRNA SPCC4G3.08 ; systematic_id "SPCC4G3.08" ; colour "2" ; gene "psk1 ||| SPCC4G3.08" ; Alias "psk1" ; db_xref "SPD:50/50A06" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR028C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "psk1" ; product "serine/threonine protein kinase Psk1" ;
chromosome3 GeneDB CDS 458100 459410 . - . mRNA SPCC4G3.08 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 459411 459466 . - . mRNA SPCC4G3.08 ; ID "SPCC4G3.08" ; systematic_id "SPCC4G3.08" ; note "mRNA from AU007581" ;
chromosome3 GeneDB 5'-UTR 459886 460116 . + . mRNA SPCC4G3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.07c" ; systematic_id "SPCC4G3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 460117 461502 . + . mRNA SPCC4G3.07c ; systematic_id "SPCC4G3.07c" ; colour "2" ; gene "phf1 ||| SPCC4G3.07c ||| swp1 ||| saf50" ; Alias "phf1" ; db_xref "SPD:44/44D07" ; synonym "swp1 ||| saf50" ; GO "GO:0033193; Lsd1/2 complex
GO:0031491; nucleosome binding
GO:0033169; histone H3-K9 demethylation
GO:0034605; cellular response to heat
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20061218 ||| term=zf-PHD finger; date=20061218 ||| term=name description, SWm associated Phd1; cv=name_description; db_xref=PMID:17440621; date=20061218 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17434129; date=20070421 ||| term=human retinoblastoma binding protein 2-like; date=19700101 ||| term=similar to S. pombe SPAC30D11.08c (paralog); date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "phf1" ; product "PHD finger containing protein Phf1" ;
chromosome3 GeneDB CDS 460117 461502 . + . mRNA SPCC4G3.07c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 461503 461756 . + . mRNA SPCC4G3.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.07c" ; systematic_id "SPCC4G3.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 461951 462385 . + . mRNA SPCC4G3.06c ; systematic_id "SPCC4G3.06c" ; colour "7" ; gene "SPCC4G3.06c ||| mrpl4" ; Alias "mrpl4" ; db_xref "SPD:03/03F10" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR439W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl4" ; product "mitochondrial ribosomal protein subunit L4 (predicted)" ;
chromosome3 GeneDB CDS 461951 462385 . + . mRNA SPCC4G3.06c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 462386 462470 . + . mRNA SPCC4G3.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.06c" ; systematic_id "SPCC4G3.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 462720 464714 . + . mRNA SPCC4G3.05c ; systematic_id "SPCC4G3.05c" ; colour "2" ; gene "mus81 ||| SPCC4G3.05c" ; Alias "mus81" ; db_xref "SPD:35/35F02" ; synonym "slx3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance|deletion; cv=phenotype; db_xref=PMID:17307401; date=20091215 ||| term=phenotype, DNA damage checkpoint defects, S-phase; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=human MUS81 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YDR386W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0008821; crossover junction endodeoxyribonuclease activity
GO:0006301; postreplication repair
GO:0007131; meiotic recombination
GO:0005515; protein binding
GO:0048476; Holliday junction resolvase complex
GO:0005634; nucleus
GO:0031297; collapsed replication fork processing
GO:0000709; meiotic joint molecule formation
GO:0000711; meiotic DNA repair synthesis
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0031573; intra-S DNA damage checkpoint" ; primary_name "mus81" ; product "Holliday junction resolvase subunit Mus81" ;
chromosome3 GeneDB CDS 462720 462815 . + . mRNA SPCC4G3.05c ; colour "2" ;
chromosome3 GeneDB CDS 462984 464714 . + . mRNA SPCC4G3.05c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 464890 464936 . + . mRNA SPCC4G3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.04c" ; systematic_id "SPCC4G3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 464937 465983 . + . mRNA SPCC4G3.04c ; systematic_id "SPCC4G3.04c" ; colour "7" ; gene "coq5 ||| SPCC4G3.04c" ; Alias "coq5" ; db_xref "SPD:15/15H12" ; GO "GO:0006744; ubiquinone biosynthesis
GO:0005739; mitochondrion
GO:0009060; aerobic respiration
GO:0043334; 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "coq5" ; product "C-methytransferase (predicted)" ;
chromosome3 GeneDB CDS 464937 465129 . + . mRNA SPCC4G3.04c ; colour "7" ;
chromosome3 GeneDB CDS 465259 465983 . + . mRNA SPCC4G3.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 465130 465135 . + . misc_feature unknown_342 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 465243 465258 . + . misc_feature unknown_343 ; colour "6" ; note "ctaaccttttaattag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 465984 466156 . + . mRNA SPCC4G3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4G3.04c" ; systematic_id "SPCC4G3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 466796 467839 . - . mRNA SPCC4G3.03 ; db_xref "SPD:15/15H02" ; systematic_id "SPCC4G3.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR149C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC4G3.03" ; product "WD40/YVTN repeat-like protein" ;
chromosome3 GeneDB CDS 466796 467839 . - . mRNA SPCC4G3.03 ; colour "10" ;
chromosome3 GeneDB CDS_parts 468839 469688 . - . mRNA SPCC4G3.02 ; systematic_id "SPCC4G3.02" ; colour "2" ; gene "aph1 ||| SPCC4G3.02" ; Alias "aph1" ; db_xref "SPD:11/11B07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060724 ||| term=HIT family; date=19700101 ||| term=orthologous to S. cerevisiae YDR305C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0004081; bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity
GO:0006154; adenosine catabolism" ; primary_name "aph1" ; product "bis(5'-nucleosidyl)-tetraphosphatase" ; EC_number "3.6.1.17" ;
chromosome3 GeneDB CDS 468839 469135 . - . mRNA SPCC4G3.02 ; colour "2" ;
chromosome3 GeneDB CDS 469245 469331 . - . mRNA SPCC4G3.02 ; colour "2" ;
chromosome3 GeneDB CDS 469396 469497 . - . mRNA SPCC4G3.02 ; colour "2" ;
chromosome3 GeneDB CDS 469626 469688 . - . mRNA SPCC4G3.02 ; colour "2" ;
chromosome3 GeneDB misc_feature 469136 469147 . - . misc_feature unknown_344 ; colour "6" ; note "ttaactcaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 469239 469244 . - . misc_feature unknown_345 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 469332 469346 . - . misc_feature unknown_346 ; colour "6" ; note "ctaatgaaaacttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 469390 469395 . - . misc_feature unknown_347 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 469498 469510 . - . misc_feature unknown_348 ; colour "6" ; note "ctaacgattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 469620 469625 . - . misc_feature unknown_349 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 470119 470667 . - . mRNA SPCC364.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC364.07" ; systematic_id "SPCC364.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 470668 472068 . - . mRNA SPCC364.07 ; systematic_id "SPCC364.07" ; colour "7" ; gene "SPCC4G3.01 ||| SPCC364.07" ; Alias "SPCC4G3.01" ; db_xref "KEGG:MAP00260; ||| SPD:21/21F10" ; synonym "SPCC4G3.01" ; GO "GO:0006564; L-serine biosynthesis
GO:0004617; phosphoglycerate dehydrogenase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER081W and YIL074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPCC4G3.01" ; product "D-3 phosphoglycerate dehydrogenase (predicted)" ; EC_number "1.1.1.95" ;
chromosome3 GeneDB CDS 470668 472068 . - . mRNA SPCC364.07 ; colour "7" ;
chromosome3 GeneDB misc_feature 471824 473974 . + . misc_feature unknown_350 ; note "nominal overlap with cosmid SPCC364 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 471824 473974 . - . misc_feature unknown_351 ; note "nominal overlap with cosmid SPCC4G3, EM:Z97052 S.pombe chromosome 3" ;
chromosome3 GeneDB 5'-UTR 472067 472316 . - . mRNA SPCC364.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC364.07" ; systematic_id "SPCC364.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 473199 473280 . - . tRNA SPCTRNASER.07 ; systematic_id "SPCTRNASER.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033447; AGA codon-amino acid adaptor activity" ; gene "SPCTRNASER.07" ; product "tRNA Serine" ; note "tRNA Ser anticodon AGA ||| tRNA Ser anticodon AGA, Cove score 59.19" ;
chromosome3 GeneDB 3'-UTR 473635 474389 . - . mRNA SPCC364.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC364.06" ; systematic_id "SPCC364.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 474390 475571 . - . mRNA SPCC364.06 ; systematic_id "SPCC364.06" ; colour "2" ; gene "SPCC364.06" ; Alias "nap1" ; db_xref "SPD:43/43H11" ; synonym "nap11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18474252; date=20080827 ||| term=phenotype, resistance to benomyl; qualifier=deletion; cv=phenotype; db_xref=PMID:18474252; date=20080827 ||| term=phenotype, DNA replication checkpoint, activated; qualifier=required|deletion; cv=phenotype; db_xref=PMID:18474252; date=20080827 ||| term=orthologous to S. cerevisiae YKR048C; date=19700101 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=misc, overlapping genome wide occupancy in coding regions Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=misc, overlapping genome wide occupancy in promoters Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0000790; nuclear chromatin
GO:0042393; histone binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006336; DNA-replication independent nucleosome assembly
GO:0006334; nucleosome assembly
GO:0006606; protein import into nucleus
GO:0006366; transcription from RNA polymerase II promoter
GO:0007089; traversing start control point of mitotic cell cycle
GO:0007089; traversing start control point of mitotic cell cycle
GO:0006337; nucleosome disassembly" ; primary_name "nap1" ; product "nucleosome assembly protein Nap1" ;
chromosome3 GeneDB CDS 474390 475571 . - . mRNA SPCC364.06 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 475570 475615 . - . mRNA SPCC364.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC364.06" ; systematic_id "SPCC364.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 475890 476045 . - . mRNA SPCC364.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC364.05" ; systematic_id "SPCC364.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 476046 478988 . - . mRNA SPCC364.05 ; systematic_id "SPCC364.05" ; colour "7" ; gene "vps3 ||| SPCC364.05" ; Alias "vps3" ; db_xref "SPD:29/29G04" ; GO "GO:0006623; protein targeting to vacuole
GO:0006886; intracellular protein transport
GO:0005737; cytoplasm
GO:0005083; small GTPase regulator activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR495C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps3" ; product "GTPase regulator Vps3 (predicted)" ;
chromosome3 GeneDB CDS 476046 478343 . - . mRNA SPCC364.05 ; colour "7" ;
chromosome3 GeneDB CDS 478400 478587 . - . mRNA SPCC364.05 ; colour "7" ;
chromosome3 GeneDB CDS 478640 478745 . - . mRNA SPCC364.05 ; colour "7" ;
chromosome3 GeneDB CDS 478800 478864 . - . mRNA SPCC364.05 ; colour "7" ;
chromosome3 GeneDB CDS 478913 478988 . - . mRNA SPCC364.05 ; colour "7" ;
chromosome3 GeneDB misc_feature 478344 478362 . - . misc_feature unknown_352 ; colour "6" ; note "ctaattaacaataaacaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 478394 478399 . - . misc_feature unknown_353 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 478588 478600 . - . misc_feature unknown_354 ; colour "6" ; note "ttaacggtggtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 478634 478639 . - . misc_feature unknown_355 ; colour "6" ; note "gtgtgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 478746 478761 . - . misc_feature unknown_356 ; colour "6" ; note "ttaacacgcgtattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 478794 478799 . - . misc_feature unknown_357 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 478865 478885 . - . misc_feature unknown_358 ; colour "6" ; note "ctaactatttgatttttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 478907 478912 . - . misc_feature unknown_359 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 478987 479025 . - . mRNA SPCC364.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC364.05" ; systematic_id "SPCC364.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 479686 479726 . + . mRNA SPCC364.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC364.04c" ; systematic_id "SPCC364.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 479727 481751 . + . mRNA SPCC364.04c ; db_xref "SPD:46/46C10" ; systematic_id "SPCC364.04c" ; colour "7" ; GO "GO:0000139; Golgi membrane
GO:0048193; Golgi vesicle transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL179C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC364.04c" ; product "CASP family protein involved in Golgi vesicle transport (predicted)" ;
chromosome3 GeneDB CDS 479727 479778 . + . mRNA SPCC364.04c ; colour "7" ;
chromosome3 GeneDB CDS 479836 479946 . + . mRNA SPCC364.04c ; colour "7" ;
chromosome3 GeneDB CDS 480013 481751 . + . mRNA SPCC364.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 479779 479784 . + . misc_feature unknown_360 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome3 GeneDB intron 479779 479835 . + . intron SPCC364.04c ; systematic_id "SPCC364.04c" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 479819 479835 . + . misc_feature unknown_361 ; colour "6" ; note "ctaacgtgagataatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 479947 479952 . + . misc_feature unknown_362 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB intron 479947 480012 . + . intron SPCC364.04c ; systematic_id "SPCC364.04c" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 479993 480012 . + . misc_feature unknown_363 ; colour "6" ; note "ctaatattgttaatatacag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 481996 482234 . - . mRNA SPCC364.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC364.03" ; systematic_id "SPCC364.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 482235 482798 . - . mRNA SPCC364.03 ; systematic_id "SPCC364.03" ; colour "7" ; gene "rpl1702 ||| rpl17-2 ||| rpl17 ||| SPCC364.03" ; Alias "rpl1702" ; db_xref "SPD:05/05H10" ; synonym "rpl17-2 ||| rpl17" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL180W and YJL177W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1702" ; product "60S ribosomal protein L17 (predicted)" ;
chromosome3 GeneDB CDS 482235 482798 . - . mRNA SPCC364.03 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 482797 482821 . - . mRNA SPCC364.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC364.03" ; systematic_id "SPCC364.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 483585 484739 . + . mRNA SPCC364.02c ; systematic_id "SPCC364.02c" ; colour "2" ; gene "bis1 ||| SPCC364.02c" ; Alias "bis1" ; db_xref "SPD:18/18C06" ; GO "GO:0031965; nuclear membrane
GO:0046982; protein heterodimerization activity
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, DiGeorge syndrome; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "bis1" ; product "stress response protein Bis1" ;
chromosome3 GeneDB CDS 483585 484739 . + . mRNA SPCC364.02c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 484910 484964 . - . mRNA SPCC364.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC364.01" ; systematic_id "SPCC364.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 484965 485979 . - . mRNA SPCC364.01 ; systematic_id "SPCC364.01" ; colour "2" ; gene "cif1 ||| SPCC364.01" ; note "splicing possibly incorrect, non-consensus branch, may use internal Met at position 1166" ; Alias "cif1" ; db_xref "SPD:15/15A11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, characterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Calnexin Independence Factor; cv=name_description; db_xref=PMID:19351719; date=20090410 ||| term=phenotype, no phenotype in exponential phase; qualifier=deletion; cv=phenotype; db_xref=PMID:19351719; date=20090428 ||| term=misc, transient overexpression of cif1 induces a stable state of viability in the absence of calnexin; db_xref=PMID:19351719; cv=misc; date=20090428 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19351719; date=20090428" ; GO "GO:0005730; nucleolus
GO:0006984; ER-nuclear signaling pathway" ; primary_name "cif1" ; product "calnexin independence factor Cif1" ;
chromosome3 GeneDB CDS 484965 485924 . - . mRNA SPCC364.01 ; colour "2" ;
chromosome3 GeneDB CDS 485977 485979 . - . mRNA SPCC364.01 ; colour "2" ;
chromosome3 GeneDB misc_feature 485925 485939 . - . misc_feature unknown_364 ; colour "6" ; note "cttatactttaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 485971 485976 . - . misc_feature unknown_365 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 485978 486011 . - . mRNA SPCC364.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC364.01" ; systematic_id "SPCC364.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 486575 486925 . - . LTR unknown_366 ; note "Tf2-type LTR ||| Tf1-type LTR" ;
chromosome3 GeneDB misc_feature 486658 486822 . - . misc_feature unknown_367 ; note "nominal overlap with cosmid SPCC364 and cosmid SPCC970" ;
chromosome3 GeneDB CDS_parts 487167 488519 . + . mRNA SPCC970.11c ; systematic_id "SPCC970.11c" ; colour "12" ; gene "SPCC970.11c ||| wtf9" ; Alias "wtf9" ; obsolete_name "wtf2" ; db_xref "SPD:52/52B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf9" ; product "wtf element Wtf9" ;
chromosome3 GeneDB CDS 487167 487305 . + . mRNA SPCC970.11c ; colour "12" ;
chromosome3 GeneDB CDS 487473 487718 . + . mRNA SPCC970.11c ; colour "12" ;
chromosome3 GeneDB CDS 487768 488046 . + . mRNA SPCC970.11c ; colour "12" ;
chromosome3 GeneDB CDS 488092 488283 . + . mRNA SPCC970.11c ; colour "12" ;
chromosome3 GeneDB CDS 488324 488386 . + . mRNA SPCC970.11c ; colour "12" ;
chromosome3 GeneDB CDS 488437 488519 . + . mRNA SPCC970.11c ; colour "12" ;
chromosome3 GeneDB misc_feature 487306 487311 . + . misc_feature unknown_368 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 487460 487472 . + . misc_feature unknown_369 ; colour "6" ; note "ttaatttaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 487719 487724 . + . misc_feature unknown_370 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 487756 487767 . + . misc_feature unknown_371 ; colour "6" ; note "ctaactcatcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 488047 488052 . + . misc_feature unknown_372 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 488047 488091 . + . intron SPCC970.11c ; systematic_id "SPCC970.11c" ; note "intron confirmed by EST" ;
chromosome3 GeneDB misc_feature 488074 488091 . + . misc_feature unknown_373 ; colour "6" ; note "ctgaccgctaacacgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 488284 488289 . + . misc_feature unknown_374 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB intron 488284 488323 . + . intron SPCC970.11c ; systematic_id "SPCC970.11c" ; note "intron confirmed by EST" ;
chromosome3 GeneDB misc_feature 488311 488323 . + . misc_feature unknown_375 ; colour "6" ; note "ctaaccgtatcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 488387 488392 . + . misc_feature unknown_376 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 488387 488436 . + . intron SPCC970.11c ; systematic_id "SPCC970.11c" ; note "intron confirmed by EST" ;
chromosome3 GeneDB misc_feature 488424 488436 . + . misc_feature unknown_377 ; colour "6" ; note "cttacccgactag, splice branch and acceptor" ;
chromosome3 GeneDB LTR 489072 489396 . - . LTR unknown_378 ; note "Tf2-type LTR" ;
chromosome3 GeneDB LTR 489375 489697 . + . LTR unknown_379 ; note "Tf2-type LTR" ;
chromosome3 GeneDB 5'-UTR 489970 490067 . + . mRNA SPCC970.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.10c" ; systematic_id "SPCC970.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 490068 492174 . + . mRNA SPCC970.10c ; systematic_id "SPCC970.10c" ; colour "2" ; gene "SPCC970.10c ||| brl2 ||| rfp1" ; Alias "brl2" ; db_xref "SPD:37/37D01" ; synonym "rfp1" ; GO "GO:0033503; HULC complex
GO:0033503; HULC complex
GO:0005721; centric heterochromatin
GO:0005634; nucleus
GO:0004842; ubiquitin-protein ligase activity
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006336; DNA replication-independent nucleosome assembly
GO:0031497; chromatin assembly
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0051569; regulation of histone H3-K4 methylation
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:17363370; date=20100727 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDL074C; date=19700101 ||| term=misc, chromatin assembly function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17374714; date=20070716 ||| term=misc, the chromatin silencing function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17363370; date=20070716 ||| term=name description, RING finger protein; cv=name_description; db_xref=PMID:17363370; date=20070716 ||| term=name description, BRE1-like; cv=name_description; db_xref=PMID:17374714; date=20070716 ||| term=ubiquitin-protein ligase E3; date=20080528 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=orthologous to human RNF20 and RNF40; date=20110113" ; primary_name "brl2" ; product "ubiquitin-protein ligase E3 Brl2" ;
chromosome3 GeneDB CDS 490068 490157 . + . mRNA SPCC970.10c ; colour "2" ;
chromosome3 GeneDB CDS 490222 492174 . + . mRNA SPCC970.10c ; colour "2" ;
chromosome3 GeneDB misc_feature 490158 490163 . + . misc_feature unknown_380 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 490207 490221 . + . misc_feature unknown_381 ; colour "6" ; note "ctaactctgttaaag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 492175 492280 . + . mRNA SPCC970.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.10c" ; systematic_id "SPCC970.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 492370 495926 . - . mRNA SPCC970.09 ; systematic_id "SPCC970.09" ; colour "2" ; gene "sec8 ||| SPCC970.09" ; Alias "sec8" ; db_xref "SPD:30/30E09" ; GO "GO:0051285; cell cortex of cell tip
GO:0032153; cell division site
GO:0000145; exocyst
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0006897; endocytosis
GO:0006887; exocytosis
GO:0006886; intracellular protein transport
GO:0006904; vesicle docking during exocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11854409; date=19700101 ||| term=orthologous to S. cerevisiae YPR055W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec8" ; product "exocyst complex subunit Sec8" ;
chromosome3 GeneDB CDS 492370 492784 . - . mRNA SPCC970.09 ; colour "2" ;
chromosome3 GeneDB CDS 492832 493549 . - . mRNA SPCC970.09 ; colour "2" ;
chromosome3 GeneDB CDS 493600 493738 . - . mRNA SPCC970.09 ; colour "2" ;
chromosome3 GeneDB CDS 493780 493954 . - . mRNA SPCC970.09 ; colour "2" ;
chromosome3 GeneDB CDS 494003 495612 . - . mRNA SPCC970.09 ; colour "2" ;
chromosome3 GeneDB CDS 495673 495722 . - . mRNA SPCC970.09 ; colour "2" ;
chromosome3 GeneDB CDS 495767 495926 . - . mRNA SPCC970.09 ; colour "2" ;
chromosome3 GeneDB misc_feature 492785 492798 . - . misc_feature unknown_382 ; colour "6" ; note "ctaactttttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 492826 492831 . - . misc_feature unknown_383 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 493550 493563 . - . misc_feature unknown_384 ; colour "6" ; note "cttaccctttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 493594 493599 . - . misc_feature unknown_385 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 493739 493754 . - . misc_feature unknown_386 ; colour "6" ; note "ttaacgttaattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 493774 493779 . - . misc_feature unknown_387 ; colour "6" ; note "gtatag, splice donor sequence" ;
chromosome3 GeneDB misc_feature 493955 493969 . - . misc_feature unknown_388 ; colour "6" ; note "ctaacaaaaatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 493997 494002 . - . misc_feature unknown_389 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 495613 495628 . - . misc_feature unknown_390 ; colour "6" ; note "ctaacgaatggttaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 495667 495672 . - . misc_feature unknown_391 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 495723 495738 . - . misc_feature unknown_392 ; colour "6" ; note "ttaacctttatgctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 495761 495766 . - . misc_feature unknown_393 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 496130 496862 . - . mRNA SPCC970.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.08" ; systematic_id "SPCC970.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 496863 499766 . - . mRNA SPCC970.08 ; db_xref "SPD:29/29G01" ; systematic_id "SPCC970.08" ; colour "7" ; GO "GO:0000827; inositol 1,3,4,5,6-pentakisphosphate kinase activity
GO:0000829; inositol heptakisphosphate kinase activity
GO:0046853; inositol and derivative phosphorylation
GO:0032958; inositol phosphate biosynthetic process
GO:0048016; inositol phosphate-mediated signaling
GO:0006797; polyphosphate metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC970.08" ; product "inositol polyphosphate kinase (predicted)" ;
chromosome3 GeneDB CDS 496863 499766 . - . mRNA SPCC970.08 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 499765 499874 . - . mRNA SPCC970.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.08" ; systematic_id "SPCC970.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 499951 500308 . + . LTR unknown_394 ; note "Tf1-type LTR" ;
chromosome3 GeneDB LTR 500370 500717 . - . LTR unknown_395 ; note "Tf1-type LTR" ;
chromosome3 GeneDB 5'-UTR 500751 500858 . + . mRNA SPCC970.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.07c" ; systematic_id "SPCC970.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 500859 502769 . + . mRNA SPCC970.07c ; systematic_id "SPCC970.07c" ; colour "2" ; gene "raf2 ||| dos2 ||| cmc2 ||| clr7 ||| SPCC970.07c" ; Alias "raf2" ; db_xref "SPD:26/26F09" ; synonym "dos2 ||| cmc2 ||| clr7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-basic zinc finger; qualifier=predicted; db_xref=PMID:16024659; date=19700101 ||| term=zinc finger protein; qualifier=predicted; db_xref=PMID:16024659; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16040243; date=19700101 ||| term=name description, Rik1- Associated Factor; cv=name_description; date=20091106 ||| term=name description, Delocalization Of Swi6; cv=name_description; date=20091106 ||| term=name description, Cullin- associated Methyltransferase complex subunit; date=20100318 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=human ortholog DNMT1; date=20100318 ||| term=species distribution, conserved in Eukaryotes; date=20100318 ||| term=species distribution, conserved in Eukaryotes only; date=20100318 ||| term=species distribution, conserved in Metazoa; date=20100318 ||| term=species distribution, conserved in Vertebrates; date=20100318 ||| term=species distribution, conserved in Fungi; date=20100318 ||| term=name description, Cryptic Loci Regulator; date=20100727" ; GO "GO:0043494; Rik1-E3 ubiquitin ligase complex
GO:0005737; cytoplasm
GO:0031934; mating-type region heterochromatin
GO:0031618; nuclear centric heterochromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0045132; meiotic chromosome segregation
GO:0051754; meiotic sister chromatid cohesion, centromeric
GO:0000070; mitotic sister chromatid segregation
GO:0051572; negative regulation of histone H3-K4 methylation
GO:0051574; positive regulation of histone H3-K9 methylation
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0031494; regulation of mating type switching
GO:0031048; small RNA-mediated chromatin silencing
GO:0035391; maintenance of chromatin silencing at silent mating-type cassette" ; primary_name "raf2" ; product "Rik1-associated factor Raf2" ;
chromosome3 GeneDB CDS 500859 502769 . + . mRNA SPCC970.07c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 502770 502840 . + . mRNA SPCC970.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.07c" ; systematic_id "SPCC970.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 503006 503616 . - . mRNA SPCC970.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.06" ; systematic_id "SPCC970.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 503617 504525 . - . mRNA SPCC970.06 ; db_xref "SPD:12/12E12" ; systematic_id "SPCC970.06" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=surfeit locus (SURF40 family); date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR284C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC970.06" ; product "cargo receptor for soluble proteins (predicted)" ;
chromosome3 GeneDB CDS 503617 504525 . - . mRNA SPCC970.06 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 504524 504655 . - . mRNA SPCC970.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.06" ; systematic_id "SPCC970.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 506415 506875 . - . mRNA SPCC970.05 ; systematic_id "SPCC970.05" ; colour "2" ; gene "rpl3601 ||| rpl36-1 ||| SPCC970.05" ; Alias "rpl3601" ; db_xref "SPD:04/04B07" ; synonym "rpl36-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR194W and YPL249C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl3601" ; product "60S ribosomal protein L36" ;
chromosome3 GeneDB CDS 506415 506492 . - . mRNA SPCC970.05 ; colour "2" ;
chromosome3 GeneDB CDS 506654 506875 . - . mRNA SPCC970.05 ; colour "2" ;
chromosome3 GeneDB misc_feature 506493 506507 . - . misc_feature unknown_396 ; colour "6" ; note "ctaacaactttttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 506493 506653 . - . intron SPCC970.05 ; systematic_id "SPCC970.05" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 506648 506653 . - . misc_feature unknown_397 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 508053 509308 . + . mRNA SPCC970.04c ; systematic_id "SPCC970.04c" ; colour "2" ; gene "mob2 ||| SPCC970.04c" ; Alias "mob2" ; db_xref "SPD:44/44B01" ; GO "GO:0005938; cell cortex
GO:0032153; cell division site
GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0030295; protein kinase activator activity
; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO:0007346; regulation of mitotic cell cycle
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL034C-B; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12456722; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; primary_name "mob2" ; product "protein kinase activator Mob2" ;
chromosome3 GeneDB CDS 508053 508320 . + . mRNA SPCC970.04c ; colour "2" ;
chromosome3 GeneDB CDS 508777 508870 . + . mRNA SPCC970.04c ; colour "2" ;
chromosome3 GeneDB CDS 508936 509308 . + . mRNA SPCC970.04c ; colour "2" ;
chromosome3 GeneDB misc_feature 508321 508326 . + . misc_feature unknown_398 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 508758 508776 . + . misc_feature unknown_399 ; colour "6" ; note "ctaactcttttcattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 508871 508876 . + . misc_feature unknown_400 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 508914 508935 . + . misc_feature unknown_401 ; colour "6" ; note "ctaacttactcttttattatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 509309 510265 . + . mRNA SPCC970.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.04c" ; systematic_id "SPCC970.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 510210 510434 . - . mRNA SPCC970.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.03" ; systematic_id "SPCC970.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 510435 511340 . - . mRNA SPCC970.03 ; db_xref "SPD:12/12E03" ; systematic_id "SPCC970.03" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL043C and YML125C and YML087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0050660; FAD binding
GO:0051287; NAD binding
GO:0004128; cytochrome-b5 reductase activity
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport" ; gene "SPCC970.03" ; product "cytochrome b5 reductase (predicted)" ; EC_number "1.6.2.2" ;
chromosome3 GeneDB CDS 510435 511340 . - . mRNA SPCC970.03 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 511339 511531 . - . mRNA SPCC970.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.03" ; systematic_id "SPCC970.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 511862 512042 . - . mRNA SPCC970.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.02" ; systematic_id "SPCC970.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 512043 513540 . - . mRNA SPCC970.02 ; db_xref "SPD:24/24C06" ; systematic_id "SPCC970.02" ; colour "7" ; GO "GO:0031362; anchored to external side of plasma membrane
GO:0008496; mannan endo-1,6-alpha-mannosidase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0051692; cellular oligosaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL046C and YMR238W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; gene "SPCC970.02" ; product "mannan endo-1,6-alpha-mannosidase (predicted)" ;
chromosome3 GeneDB CDS 512043 512275 . - . mRNA SPCC970.02 ; colour "7" ;
chromosome3 GeneDB CDS 512326 512635 . - . mRNA SPCC970.02 ; colour "7" ;
chromosome3 GeneDB CDS 512709 513281 . - . mRNA SPCC970.02 ; colour "7" ;
chromosome3 GeneDB CDS 513328 513540 . - . mRNA SPCC970.02 ; colour "7" ;
chromosome3 GeneDB misc_feature 512276 512290 . - . misc_feature unknown_402 ; colour "6" ; note "ctaactttataatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 512320 512325 . - . misc_feature unknown_403 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 512636 512651 . - . misc_feature unknown_404 ; colour "6" ; note "ctaacagtttcaccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 512703 512708 . - . misc_feature unknown_405 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 513282 513300 . - . misc_feature unknown_406 ; colour "6" ; note "ttaacaacaatggctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 513322 513327 . - . misc_feature unknown_407 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 513539 513785 . - . mRNA SPCC970.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.02" ; systematic_id "SPCC970.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 514122 514770 . - . mRNA SPCC970.12 ; systematic_id "SPCC970.12" ; colour "2" ; gene "mis18 ||| SPCC970.12" ; Alias "mis18" ; db_xref "SPD:07/07E03" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; condensed chromosome kinetochore
GO:0005634; nucleus
GO:0005515; protein binding
GO:0031055; chromatin remodeling at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0016575; histone deacetylation
GO:0051382; kinetochore assembly
GO:0034501; protein localization to kinetochore
GO:0031066; regulation of histone deacetylation at centromere
GO:0034080; DNA replication-independent nucleosome assembly at centromere" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15369671; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human hMis18 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis18" ; product "kinetochore protein Mis18" ;
chromosome3 GeneDB CDS 514122 514251 . - . mRNA SPCC970.12 ; colour "2" ;
chromosome3 GeneDB CDS 514293 514328 . - . mRNA SPCC970.12 ; colour "2" ;
chromosome3 GeneDB CDS 514377 514463 . - . mRNA SPCC970.12 ; colour "2" ;
chromosome3 GeneDB CDS 514511 514571 . - . mRNA SPCC970.12 ; colour "2" ;
chromosome3 GeneDB CDS 514617 514770 . - . mRNA SPCC970.12 ; colour "2" ;
chromosome3 GeneDB misc_feature 514252 514266 . - . misc_feature unknown_408 ; colour "6" ; note "ctaaccccagtgaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 514287 514292 . - . misc_feature unknown_409 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 514329 514345 . - . misc_feature unknown_410 ; colour "6" ; note "ttaacaaaatcatgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 514371 514376 . - . misc_feature unknown_411 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 514464 514481 . - . misc_feature unknown_412 ; colour "6" ; note "ctaatacaaaaattatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 514505 514510 . - . misc_feature unknown_413 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 514572 514588 . - . misc_feature unknown_414 ; colour "6" ; note "ttaattatttcatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 514611 514616 . - . misc_feature unknown_415 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 514906 517903 . - . mRNA SPCC970.01 ; systematic_id "SPCC970.01" ; colour "2" ; db_xref "SPD:47/47F11" ; Alias "rad16" ; synonym "rad10 ||| rad20 ||| swi9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:8769419; date=20100730 ||| term=orthologous to S. cerevisiae YPL022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20090908 ||| term=human ERCC4 ortholog; date=20100217" ; GO "GO:0000109; nucleotide-excision repair complex
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0046982; protein heterodimerization activity
GO:0000014; single-stranded DNA specific endodeoxyribonuclease activity
GO:0007534; gene conversion at mating-type locus
GO:0006311; meiotic gene conversion
GO:0006296; nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006289; nucleotide-excision repair" ; primary_name "rad16" ; product "DNA repair endonuclease XPF" ; EC_number "3.1.-.-" ;
chromosome3 GeneDB CDS 514906 515322 . - . mRNA SPCC970.01 ; colour "2" ;
chromosome3 GeneDB CDS 515363 515794 . - . mRNA SPCC970.01 ; colour "2" ;
chromosome3 GeneDB CDS 515837 516164 . - . mRNA SPCC970.01 ; colour "2" ;
chromosome3 GeneDB CDS 516204 516552 . - . mRNA SPCC970.01 ; colour "2" ;
chromosome3 GeneDB CDS 516602 516885 . - . mRNA SPCC970.01 ; colour "2" ;
chromosome3 GeneDB CDS 516936 517412 . - . mRNA SPCC970.01 ; colour "2" ;
chromosome3 GeneDB CDS 517459 517581 . - . mRNA SPCC970.01 ; colour "2" ;
chromosome3 GeneDB CDS 517635 517903 . - . mRNA SPCC970.01 ; colour "2" ;
chromosome3 GeneDB misc_feature 515323 515336 . - . misc_feature unknown_416 ; colour "6" ; note "ctgacagcttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 515357 515362 . - . misc_feature unknown_417 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 515795 515807 . - . misc_feature unknown_418 ; colour "6" ; note "ctaatctaaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 515831 515836 . - . misc_feature unknown_419 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 516165 516177 . - . misc_feature unknown_420 ; colour "6" ; note "ctaataagtctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 516198 516203 . - . misc_feature unknown_421 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 516553 516568 . - . misc_feature unknown_422 ; colour "6" ; note "ttaacaaatctttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 516596 516601 . - . misc_feature unknown_423 ; colour "6" ; note "gtataa, splice donor sequence" ;
chromosome3 GeneDB misc_feature 516886 516898 . - . misc_feature unknown_424 ; colour "6" ; note "ctaactaaacaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 516930 516935 . - . misc_feature unknown_425 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 517413 517432 . - . misc_feature unknown_426 ; colour "6" ; note "cttacatatggttcttacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 517453 517458 . - . misc_feature unknown_427 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 517581 517602 . - . misc_feature unknown_428 ; colour "6" ; note "ctgatttattaataattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 517629 517634 . - . misc_feature unknown_429 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 517902 518076 . - . mRNA SPCC970.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC970.01" ; systematic_id "SPCC970.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 518001 518095 . + . misc_feature unknown_430 ; note "nominal overlap with cosmid SPCC970 and SPCC10H11" ;
chromosome3 GeneDB misc_feature 518393 518441 . + . misc_feature unknown_431 ; note "short region of similar to a gene free region of SPCC1840 S. pombe chromosome 3" ;
chromosome3 GeneDB 5'-UTR 519505 519539 . + . mRNA SPCC10H11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC10H11.01" ; systematic_id "SPCC10H11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 519540 522584 . + . mRNA SPCC10H11.01 ; systematic_id "SPCC10H11.01" ; colour "2" ; gene "prp11 ||| SPCC10H11.01" ; Alias "prp11" ; db_xref "SPD:29/29H07" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YBR237W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9003295; qualifier=ts; date=20100708" ; primary_name "prp11" ; product "ATP-dependent RNA helicase Prp11" ;
chromosome3 GeneDB CDS 519540 522584 . + . mRNA SPCC10H11.01 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 522585 522642 . + . mRNA SPCC10H11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC10H11.01" ; systematic_id "SPCC10H11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB rRNA 523289 523475 . + . rRNA SPRRNA.24 ; systematic_id "SPRRNA.24" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "5S rRNA" ;
chromosome3 GeneDB 5'-UTR 523960 524131 . + . mRNA SPCC10H11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC10H11.02" ; systematic_id "SPCC10H11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 524132 525001 . + . mRNA SPCC10H11.02 ; systematic_id "SPCC10H11.02" ; colour "2" ; gene "cwf23 ||| SPCC10H11.02 ||| SPCP31B10.01" ; Alias "cwf23" ; db_xref "SPD:11/11G04" ; synonym "SPCP31B10.01" ; GO "GO:0005681; spliceosome complex
GO:0030544; Hsp70 protein binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YGL128C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf23" ; product "DNAJ domain protein Cwf23" ;
chromosome3 GeneDB CDS 524132 525001 . + . mRNA SPCC10H11.02 ; colour "2" ;
chromosome3 GeneDB misc_feature 524660 524758 . + . misc_feature unknown_432 ; note "nominal overlap with cosmid SPCC10H11 and cosmid SPCP31B10" ;
chromosome3 GeneDB CDS_parts 525361 525792 . + . mRNA SPCP31B10.02 ; systematic_id "SPCP31B10.02" ; colour "10" ; gene "SPCP31B10.02" ; note "conserved VP.KP.EP.NCC.SGC..CVW.Y..DL" ; db_xref "SPD:03/03F03" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL107W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "mitochondrial conserved eukaryotic protein (predicted)" ;
chromosome3 GeneDB CDS 525361 525792 . + . mRNA SPCP31B10.02 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 525793 525831 . + . mRNA SPCP31B10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP31B10.02" ; systematic_id "SPCP31B10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 525941 526270 . - . mRNA SPCP31B10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP31B10.03c" ; systematic_id "SPCP31B10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 526271 526690 . - . mRNA SPCP31B10.03c ; systematic_id "SPCP31B10.03c" ; colour "2" ; gene "med31 ||| soh1 ||| sep10 ||| SPCP31B10.03c" ; Alias "med31" ; db_xref "SPD:03/03D03" ; synonym "soh1 ||| sep10" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, pleiotropic effects; qualifier=deletion; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YGL127C; date=19700101 ||| term=phenotype, sterile; qualifier=deletion; cv=phenotype; db_xref=PMID:15356001; date=20070706 ||| term=phenotype, septation defects; db_xref=PMID:10392445; date=20070706 ||| term=phenotype, colony morphology, flocculation; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15829570; date=20090110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17922236; date=20090110" ; primary_name "med31" ; product "mediator complex subunit Med31" ;
chromosome3 GeneDB CDS 526271 526690 . - . mRNA SPCP31B10.03c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 526689 526711 . - . mRNA SPCP31B10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP31B10.03c" ; systematic_id "SPCP31B10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 527392 527601 . + . mRNA SPCP31B10.04 ; ID "SPCP31B10.04" ; systematic_id "SPCP31B10.04" ; note "mRNA from AU006488" ;
chromosome3 GeneDB CDS_parts 527602 528647 . + . mRNA SPCP31B10.04 ; db_xref "SPD:15/15H07" ; systematic_id "SPCP31B10.04" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL077W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCP31B10.04" ; product "conserved fungal protein" ; note "homology to YKL077W is low but has conserved residues by multiple alignment, conserved N-terminal signal peptide and C-terminal transmenbrane helix ||| confirmed intron" ;
chromosome3 GeneDB CDS 527602 527665 . + . mRNA SPCP31B10.04 ; colour "10" ;
chromosome3 GeneDB CDS 527751 528092 . + . mRNA SPCP31B10.04 ; colour "10" ;
chromosome3 GeneDB CDS 528190 528647 . + . mRNA SPCP31B10.04 ; colour "10" ;
chromosome3 GeneDB misc_feature 527666 527671 . + . misc_feature unknown_433 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 527666 527750 . + . intron SPCP31B10.04 ; systematic_id "SPCP31B10.04" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 527740 527750 . + . misc_feature unknown_434 ; colour "6" ; note "ctaacctatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 528093 528098 . + . misc_feature unknown_435 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 528175 528189 . + . misc_feature unknown_436 ; colour "6" ; note "ctaactatttttcag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 528648 528690 . + . mRNA SPCP31B10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP31B10.04" ; systematic_id "SPCP31B10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 529075 529172 . + . mRNA SPCP31B10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP31B10.05" ; systematic_id "SPCP31B10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 529173 530783 . + . mRNA SPCP31B10.05 ; systematic_id "SPCP31B10.05" ; colour "2" ; gene "SPCP31B10.05 ||| tdp1" ; Alias "tdp1" ; db_xref "SPD:45/45D01" ; GO "GO:0017005; tyrosyl-DNA phosphodiesterase activity
GO:0005634; nucleus
GO:0000012; single-strand break repair" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR223C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, spinocerebellar ataxia; date=20090209 ||| term=human SCAN1 ortholog; date=20090209 ||| term=phenotype, sensitive to CPT; cv=phenotype; qualifier=deletion; db_xref=PMID:19197239; date=20090216 ||| term=phenotype, sensitive to H202; qualifier=deletion; cv=phenotype;db_xref=PMID:19197239; date=20090216 ||| term=phenotype, die in G0 with an apoptotic-like phenotype; qualifier=deletion; db_xref=PMID:19197239; cv=phenotype; date=20090216 ||| term=phenotype, protects against physiological oxidative damage in G0; qualifier=deletion; db_xref=PMID:19197239; cv=phenotype; date=20090216 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=disease associated, neurological disorders; date=20091217" ; primary_name "tdp1" ; product "tyrosyl-DNA phosphodiesterase Tdp1" ;
chromosome3 GeneDB CDS 529173 530783 . + . mRNA SPCP31B10.05 ; colour "2" ;
chromosome3 GeneDB misc_RNA 529215 531143 . - . misc_RNA SPNCRNA.580 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.580" ; synonym "SPNG2AF57" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB 3'-UTR 530784 531386 . + . mRNA SPCP31B10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP31B10.05" ; systematic_id "SPCP31B10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 532541 533321 . + . mRNA SPCP31B10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP31B10.06" ; systematic_id "SPCP31B10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 533322 536888 . + . mRNA SPCP31B10.06 ; systematic_id "SPCP31B10.06" ; colour "10" ; gene "SPCP31B10.06 ||| mug190" ; Alias "mug190" ; db_xref "SPD:48/48D09" ; GO "GO:0016020; membrane
GO:0008289; lipid binding
GO:0005543; phospholipid binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YML072C and YNL087W and YOR086C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug190" ; product "C2 domain protein" ;
chromosome3 GeneDB CDS 533322 536888 . + . mRNA SPCP31B10.06 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 536889 537053 . + . mRNA SPCP31B10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP31B10.06" ; systematic_id "SPCP31B10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 537326 539854 . + . mRNA SPCP31B10.07 ; systematic_id "SPCP31B10.07" ; colour "2" ; gene "eft202 ||| SPCP31B10.07" ; db_xref "SPD:29/29C06" ; Alias "eft202" ; GO "GO:0003746; translation elongation factor activity
GO:0005525; GTP binding
GO:0006414; translational elongation
GO:0005840; ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR133W and YDR385W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "eft202" ; product "translation elongation factor 2 (EF-2) Eft2,B" ;
chromosome3 GeneDB CDS 537326 539854 . + . mRNA SPCP31B10.07 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 539855 539910 . + . mRNA SPCP31B10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP31B10.07" ; systematic_id "SPCP31B10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 540240 540258 . - . mRNA SPCP31B10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP31B10.08c" ; systematic_id "SPCP31B10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 540259 540775 . - . mRNA SPCP31B10.08c ; systematic_id "SPCP31B10.08c" ; colour "2" ; gene "rpl35a ||| rpl33 ||| SPCP31B10.08c" ; Alias "rpl35a" ; db_xref "SPD:05/05B02" ; synonym "rpl33" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR234C and YPL143W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl35a" ; product "60S ribosomal protein L35a" ;
chromosome3 GeneDB CDS 540259 540376 . - . mRNA SPCP31B10.08c ; colour "2" ;
chromosome3 GeneDB CDS 540567 540775 . - . mRNA SPCP31B10.08c ; colour "2" ;
chromosome3 GeneDB misc_feature 540377 540393 . - . misc_feature unknown_437 ; colour "6" ; note "ctaacttatcgttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 540561 540566 . - . misc_feature unknown_438 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 540774 540791 . - . mRNA SPCP31B10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP31B10.08c" ; systematic_id "SPCP31B10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 541065 541274 . + . mRNA SPCC962.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.01" ; systematic_id "SPCC962.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 541275 545744 . + . mRNA SPCC962.01 ; systematic_id "SPCC962.01" ; colour "10" ; gene "SPCP31B10.09 ||| SPCC962.01" ; Alias "SPCP31B10.09" ; db_xref "SPD:30/30H05" ; synonym "SPCP31B10.09" ; GO "GO:0016020; membrane
GO:0008289; lipid binding
GO:0005543; phospholipid binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YML072C and YNL087W and YOR086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "SPCP31B10.09" ; product "C2 domain protein" ;
chromosome3 GeneDB CDS 541275 541388 . + . mRNA SPCC962.01 ; colour "10" ;
chromosome3 GeneDB CDS 541569 545744 . + . mRNA SPCC962.01 ; colour "10" ;
chromosome3 GeneDB misc_feature 541389 541394 . + . misc_feature unknown_439 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 541553 541568 . + . misc_feature unknown_440 ; colour "6" ; note "ttaacgctagaaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 544200 546308 . + . misc_feature unknown_441 ; note "nominal overlap with cosmid SPCC962 and plasmid SPAP31B10" ;
chromosome3 GeneDB 3'-UTR 545745 545850 . + . mRNA SPCC962.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.01" ; systematic_id "SPCC962.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 545850 546107 . - . mRNA SPCC962.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.02c" ; systematic_id "SPCC962.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 546108 549148 . - . mRNA SPCC962.02c ; systematic_id "SPCC962.02c" ; colour "2" ; db_xref "SPD:29/29H06" ; Alias "bir1" ; synonym "cut17 ||| pbh1 ||| SPCP31B10.10c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=localization, kinetochore to spindle relocalization or Bir1 is dependent on Cdk inactivation and an intact microtubular network; db_xref=PMID:16824200; date=20060814 ||| term=orthologous to S. cerevisiae YJR089W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human BIRC2 and BIRC3 ortholog; date=20100217 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0032133; chromosome passenger complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005634; nucleus
GO:0051233; spindle midzone
GO:0005819; spindle
GO:0033205; cell cycle cytokinesis
GO:0034501; protein localization to kinetochore
GO:0034501; protein localization to kinetochore
GO:0034501; protein localization to kinetochore
GO:0030261; chromosome condensation
GO:0030261; chromosome condensation
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0007094; mitotic spindle checkpoint
GO:0000022; mitotic spindle elongation
GO:0034501; protein localization to kinetochore
GO:0034503; protein localization to nucleolar rDNA repeats
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding" ; primary_name "bir1" ; product "survivin, Bir1" ;
chromosome3 GeneDB CDS 546108 548972 . - . mRNA SPCC962.02c ; colour "2" ;
chromosome3 GeneDB CDS 549020 549148 . - . mRNA SPCC962.02c ; colour "2" ;
chromosome3 GeneDB misc_feature 546108 546308 . - . misc_feature unknown_442 ; note "see cut17 SPCC962.02c for complete CDS" ;
chromosome3 GeneDB misc_feature 548973 548987 . - . misc_feature unknown_443 ; colour "6" ; note "ctaacaagaaaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 549014 549019 . - . misc_feature unknown_444 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 549147 549206 . - . mRNA SPCC962.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.02c" ; systematic_id "SPCC962.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 549700 550472 . - . mRNA SPCC962.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.03c" ; systematic_id "SPCC962.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 550473 552101 . - . mRNA SPCC962.03c ; systematic_id "SPCC962.03c" ; colour "2" ; gene "cut15 ||| SPCC962.03c" ; Alias "cut15" ; db_xref "SPD:26/26A09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0030674; protein binding, bridging
GO:0008565; protein transporter activity
GO:0000087; M phase of mitotic cell cycle
GO:0006607; NLS-bearing substrate import into nucleus
GO:0030261; chromosome condensation
GO:0006606; protein import into nucleus
GO:0006606; protein import into nucleus
GO:0006606; protein import into nucleus
GO:0007346; regulation of progression through mitotic cell cycle
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=armadillo repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9740803; date=19700101 ||| term=orthologous to S. cerevisiae YNL189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118" ; primary_name "cut15" ; product "karyopherin Cut15" ;
chromosome3 GeneDB CDS 550473 552101 . - . mRNA SPCC962.03c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 552100 552120 . - . mRNA SPCC962.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.03c" ; systematic_id "SPCC962.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 552825 552963 . - . LTR unknown_445 ; note "LTR fragment" ;
chromosome3 GeneDB 5'-UTR 553165 553184 . + . mRNA SPCC962.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.04" ; systematic_id "SPCC962.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 553185 553704 . + . mRNA SPCC962.04 ; systematic_id "SPCC962.04" ; colour "7" ; gene "rps1201 ||| rps12-1 ||| SPCC962.04 ||| rps12" ; Alias "rps1201" ; db_xref "SPD:05/05B09" ; synonym "rps12-1 ||| rps12" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR369C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1201" ; product "40S ribosomal protein S12 (predicted)" ;
chromosome3 GeneDB CDS 553185 553565 . + . mRNA SPCC962.04 ; colour "7" ;
chromosome3 GeneDB CDS 553648 553704 . + . mRNA SPCC962.04 ; colour "7" ;
chromosome3 GeneDB misc_feature 553566 553571 . + . misc_feature unknown_446 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 553566 553647 . + . intron SPCC962.04 ; systematic_id "SPCC962.04" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 553632 553647 . + . misc_feature unknown_447 ; colour "6" ; note "ctaacatgtaatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 553705 553716 . + . mRNA SPCC962.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.04" ; systematic_id "SPCC962.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 554379 554520 . + . mRNA SPCC962.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.05" ; systematic_id "SPCC962.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 554521 556200 . + . mRNA SPCC962.05 ; systematic_id "SPCC962.05" ; colour "10" ; gene "SPCC962.05 ||| ast1" ; Alias "ast1" ; db_xref "SPD:35/35B08" ; GO "GO:0004518; nuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080519 ||| term=XP-G family; date=20080519 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ast1" ; product "asteroid homolog, XP-G family protein" ; reserved_name "ast1" ;
chromosome3 GeneDB CDS 554521 554744 . + . mRNA SPCC962.05 ; colour "10" ;
chromosome3 GeneDB CDS 554865 556200 . + . mRNA SPCC962.05 ; colour "10" ;
chromosome3 GeneDB misc_feature 554723 554728 . + . misc_feature unknown_448 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 554852 554864 . + . misc_feature unknown_449 ; colour "6" ; note "ctaacgcatacag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 556201 556248 . + . mRNA SPCC962.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.05" ; systematic_id "SPCC962.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 556303 556395 . - . mRNA SPCC962.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.06c" ; systematic_id "SPCC962.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 556396 558205 . - . mRNA SPCC962.06c ; systematic_id "SPCC962.06c" ; colour "2" ; gene "bpb1 ||| sf1 ||| SPCC962.06c" ; Alias "bpb1" ; db_xref "SPD:36/36E11" ; synonym "sf1" ; GO "GO:0000243; commitment complex
GO:0000349; generation of catalytic spliceosome for first transesterification step
GO:0003723; RNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=KH domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR116W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "bpb1" ; product "zinc finger protein Bpb1" ;
chromosome3 GeneDB CDS 556396 558128 . - . mRNA SPCC962.06c ; colour "2" ;
chromosome3 GeneDB CDS 558175 558205 . - . mRNA SPCC962.06c ; colour "2" ;
chromosome3 GeneDB misc_feature 558129 558141 . - . misc_feature unknown_450 ; colour "6" ; note "ttaatatttttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 558129 558174 . - . intron SPCC962.06c ; systematic_id "SPCC962.06c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 558169 558174 . - . misc_feature unknown_451 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 558204 558226 . - . mRNA SPCC962.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC962.06c" ; systematic_id "SPCC962.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 558430 558439 . - . misc_feature unknown_452 ; colour "4" ; note "discrepancy: in cosmid c2C2 this has only 9 A's" ;
chromosome3 GeneDB misc_feature 558489 560336 . + . misc_feature unknown_453 ; note "nominal overlap with cosmid SPCC1672, EM:AL031324 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 558489 560336 . - . misc_feature unknown_454 ; note "nominal overlap with cosmid SPCC962, EM:AL031323 S. pombe chromosome 3" ;
chromosome3 GeneDB 5'-UTR 559876 560066 . + . mRNA SPCC1672.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.01" ; systematic_id "SPCC1672.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 560067 561277 . + . mRNA SPCC1672.01 ; db_xref "SPD:19/19C08" ; systematic_id "SPCC1672.01" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR025C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110" ; GO "GO:0004401; histidinol-phosphatase activity
GO:0000105; histidine biosynthesis" ; gene "SPCC1672.01" ; product "histidinol-phosphatase (predicted)" ; EC_number "3.1.3.15" ;
chromosome3 GeneDB CDS 560067 560098 . + . mRNA SPCC1672.01 ; colour "7" ;
chromosome3 GeneDB CDS 560215 560341 . + . mRNA SPCC1672.01 ; colour "7" ;
chromosome3 GeneDB CDS 560516 561277 . + . mRNA SPCC1672.01 ; colour "7" ;
chromosome3 GeneDB misc_feature 560099 560104 . + . misc_feature unknown_455 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 560199 560214 . + . misc_feature unknown_456 ; colour "6" ; note "ctaacttttattgaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 560342 560347 . + . misc_feature unknown_457 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 560497 560515 . + . misc_feature unknown_458 ; colour "6" ; note "ctaactatgattcatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 561636 562352 . - . mRNA SPCC1672.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.02c" ; systematic_id "SPCC1672.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 562353 563117 . - . mRNA SPCC1672.02c ; systematic_id "SPCC1672.02c" ; colour "2" ; db_xref "SPD:09/09E02" ; Alias "sap1" ; GO "GO:0000790; nuclear chromatin
GO:0008301; DNA bending activity
GO:0003677; DNA binding
GO:0003677; DNA binding
GO:0042803; protein homodimerization activity
GO:0043110; rDNA spacer replication fork barrier binding
GO:0043110; rDNA spacer replication fork barrier binding
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0000728; gene conversion at mating-type locus, DNA double-strand break formation
GO:0031582; replication fork blocking at rDNA repeats
GO:0031582; replication fork blocking at rDNA repeats
GO:0071170; site-specifc DNA replication termination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8114737; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=experimental tools, structure; cv=ex_tools; db_xref=PMID:10884352; date=20090427 ||| term=DNA binding specificity, binds 5'-TA[AG]GCAGNTN[CT]AACG[AC]G-3'; date=20100614 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:8114737; date=20101004" ; primary_name "sap1" ; product "switch-activating protein Sap1" ;
chromosome3 GeneDB CDS 562353 563117 . - . mRNA SPCC1672.02c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 563116 563726 . - . mRNA SPCC1672.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.02c" ; systematic_id "SPCC1672.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 564187 565519 . + . misc_RNA SPNCRNA.466 ; db_xref "PMID:18488015" ; synonym "SPNG2151" ; systematic_id "SPNCRNA.466" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, longest ORF with methionine is 66 amino acids; cv=warning; date=20071008 ||| term=warning, no detectable long open reading frame; cv=warning; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome3 GeneDB 3'-UTR 565760 565890 . - . mRNA SPCC1672.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.03c" ; systematic_id "SPCC1672.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 565891 567474 . - . mRNA SPCC1672.03c ; db_xref "SPD:25/25E07" ; systematic_id "SPCC1672.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL238C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0046098; guanine metabolism
GO:0005737; cytoplasm
GO:0008892; guanine deaminase activity" ; gene "SPCC1672.03c" ; product "guanine deaminase (predicted)" ; EC_number "3.5.4.3" ;
chromosome3 GeneDB CDS 565891 567474 . - . mRNA SPCC1672.03c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 567473 568015 . - . mRNA SPCC1672.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.03c" ; systematic_id "SPCC1672.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 568700 569072 . - . mRNA SPCC1672.04c ; db_xref "SPD:42/42A07" ; systematic_id "SPCC1672.04c" ; colour "7" ; GO "GO:0033617; mitochondrial respiratory chain complex IV assembly
GO:0005758; mitochondrial intermembrane space
GO:0016531; copper chaperone activity
GO:0005507; copper ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CHCH domain; date=19700101 ||| term=orthologous to S. cerevisiae YLL018C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1672.04c" ; product "mitochondrial copper chaperone (predicted)" ;
chromosome3 GeneDB CDS 568700 568953 . - . mRNA SPCC1672.04c ; colour "7" ;
chromosome3 GeneDB CDS 569021 569072 . - . mRNA SPCC1672.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 568954 568971 . - . misc_feature unknown_459 ; colour "6" ; note "ctaatacttgtcgtgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 569015 569020 . - . misc_feature unknown_460 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 570105 570242 . - . mRNA SPCC1672.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.05c" ; systematic_id "SPCC1672.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 570243 571448 . - . mRNA SPCC1672.05c ; systematic_id "SPCC1672.05c" ; colour "7" ; gene "SPCC1672.05c ||| yrs1" ; Alias "yrs1" ; db_xref "KEGG:MAP00400; ||| KEGG:MAP00970; ||| SPD:34/34E02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR185C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006437; tyrosyl-tRNA aminoacylation
GO:0004831; tyrosine-tRNA ligase activity
GO:0005737; cytoplasm" ; primary_name "yrs1" ; product "cytoplasmic tyrosine-tRNA ligase Yrs1 (predicted)" ; EC_number "6.1.1.1" ;
chromosome3 GeneDB CDS 570243 571448 . - . mRNA SPCC1672.05c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 571449 571477 . - . mRNA SPCC1672.05c ; ID "SPCC1672.05c" ; systematic_id "SPCC1672.05c" ; note "mRNA from AU010928" ;
chromosome3 GeneDB 3'-UTR 571591 571709 . - . mRNA SPCC1672.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.06c" ; systematic_id "SPCC1672.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 571710 574472 . - . mRNA SPCC1672.06c ; systematic_id "SPCC1672.06c" ; colour "2" ; gene "asp1 ||| SPCC1672.06c ||| vip1" ; Alias "asp1" ; db_xref "SPD:47/47B11" ; synonym "vip1" ; GO "GO:0005737; cytoplasm
GO:0000828; inositol heptakisphosphate kinase activity
GO:0033187; inositol hexakisphosphate 4-kinase or 6-kinase activity
GO:0030866; cortical actin cytoskeleton organization and biogenesis
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0032958; inositol phosphate biosynthetic process
GO:0050848; regulation of calcium-mediated signaling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, rounded cells; db_xref=PMID:10388810; qualifier=deletion|at_high_temperature; cv=phenotype; date=20060601 ||| term=phenotype, growth defect, slow growth at high temperatures; db_xref=PMID:10388810; qualifier=deletion; cv=phenotype; date=20060601 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10388810; date=19700101 ||| term=orthologous to S. cerevisiae YLR410W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "asp1" ; product "inositol hexakisphosphate kinase/inositol pyrophosphate synthase (predicted)" ;
chromosome3 GeneDB CDS 571710 574472 . - . mRNA SPCC1672.06c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 574471 574561 . - . mRNA SPCC1672.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.06c" ; systematic_id "SPCC1672.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 575499 575536 . + . mRNA SPCC1672.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.07" ; systematic_id "SPCC1672.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 575537 578304 . + . mRNA SPCC1672.07 ; db_xref "SPD:39/39B02" ; systematic_id "SPCC1672.07" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0006364; 35S primary transcript processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR409C; date=19700101 ||| term=disease associated, primary open-angle glaucoma; date=20080916 ||| term=human WDR36 ortholog; date=20080916 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1672.07" ; product "U3 snoRNP-associated protein Utp21 (predicted)" ;
chromosome3 GeneDB CDS 575537 575612 . + . mRNA SPCC1672.07 ; colour "7" ;
chromosome3 GeneDB CDS 575672 578304 . + . mRNA SPCC1672.07 ; colour "7" ;
chromosome3 GeneDB misc_feature 575613 575618 . + . misc_feature unknown_461 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 575656 575671 . + . misc_feature unknown_462 ; colour "6" ; note "ctaactgtatttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 578305 578410 . + . mRNA SPCC1672.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.07" ; systematic_id "SPCC1672.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 578847 578919 . + . tRNA SPCTRNAARG.08 ; systematic_id "SPCTRNAARG.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033405; TCT codon-amino acid adaptor activity" ; gene "SPCTRNAARG.08" ; product "tRNA Arginine" ; note "tRNA Arg anticodon TCT" ;
chromosome3 GeneDB 3'-UTR 579220 579455 . - . mRNA SPCC1672.08c ; ID "SPCC1672.08c" ; systematic_id "SPCC1672.08c" ; note "mRNA from SPAB475" ;
chromosome3 GeneDB CDS_parts 579456 580313 . - . mRNA SPCC1672.08c ; systematic_id "SPCC1672.08c" ; colour "2" ; gene "tfa2 ||| SPCC1672.08c" ; Alias "tfa2" ; db_xref "SPD:11/11D09" ; GO "GO:0005673; transcription factor TFIIE complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity
GO:0051290; protein heterotetramerization
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15743411; date=19700101 ||| term=fork head domain; db_xref=PMID:15743411; date=19700101 ||| term=orthologous to S. cerevisiae YKR062W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tfa2" ; product "transcription factor TFIIE beta subunit, TFIIEB, Tfa2" ;
chromosome3 GeneDB CDS 579456 580313 . - . mRNA SPCC1672.08c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 580314 580386 . - . mRNA SPCC1672.08c ; ID "SPCC1672.08c" ; db_xref "EMBL:AB176673" ; systematic_id "SPCC1672.08c" ; note "mRNA from AB176673" ;
chromosome3 GeneDB CDS_parts 580593 582195 . + . mRNA SPCC1672.09 ; db_xref "SPD:25/25G03" ; systematic_id "SPCC1672.09" ; colour "7" ; GO "GO:0016298; lipase activity
GO:0004771; sterol esterase activity
GO:0006629; lipid metabolism
GO:0006696; ergosterol metabolic process
GO:0044242; cellular lipid catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1672.09" ; product "triglyceride lipase-cholesterol esterase (predicted)" ;
chromosome3 GeneDB CDS 580593 580627 . + . mRNA SPCC1672.09 ; colour "7" ;
chromosome3 GeneDB CDS 580666 581122 . + . mRNA SPCC1672.09 ; colour "7" ;
chromosome3 GeneDB CDS 581239 581626 . + . mRNA SPCC1672.09 ; colour "7" ;
chromosome3 GeneDB CDS 581672 582195 . + . mRNA SPCC1672.09 ; colour "7" ;
chromosome3 GeneDB misc_feature 580628 580633 . + . misc_feature unknown_463 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 580653 580665 . + . misc_feature unknown_464 ; colour "6" ; note "ctgacaaataaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 581123 581128 . + . misc_feature unknown_465 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 581123 581238 . + . intron SPCC1672.09 ; systematic_id "SPCC1672.09" ; note "confirmed by est SPD249" ;
chromosome3 GeneDB misc_feature 581224 581238 . + . misc_feature unknown_466 ; colour "6" ; note "ctaattgtgcttaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 581627 581632 . + . misc_feature unknown_467 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome3 GeneDB intron 581627 581671 . + . intron SPCC1672.09 ; systematic_id "SPCC1672.09" ; note "confirmed by est SPD249" ;
chromosome3 GeneDB misc_feature 581655 581671 . + . misc_feature unknown_468 ; colour "6" ; note "ctgacatttttatccag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 582196 582701 . + . mRNA SPCC1672.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.09" ; systematic_id "SPCC1672.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 583036 583289 . + . misc_RNA SPNCRNA.467 ; db_xref "PMID:18488015" ; synonym "SPNG2152" ; systematic_id "SPNCRNA.467" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB snoRNA 583416 583605 . + . snoRNA SPSNORNA.32 ; Alias "sno12" ; obsolete_name "SPSNORNA.51" ; db_xref "EMBL:AJ577639 ||| EMBL:AJ632017 ||| PMID:15716270" ; systematic_id "SPSNORNA.32" ; primary_name "sno12" ; gene "SPSNORNA.32 ||| sno12 ||| snR99" ; product "12 small nucleolar RNA/small nucleolar RNA snR99" ;
chromosome3 GeneDB 5'-UTR 584130 584134 . + . mRNA SPCC1672.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.10" ; systematic_id "SPCC1672.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 584135 585587 . + . mRNA SPCC1672.10 ; systematic_id "SPCC1672.10" ; colour "2" ; gene "mis16 ||| SPCC1672.10" ; Alias "mis16" ; db_xref "SPD:23/23D08" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; condensed chromosome kinetochore
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0034080; DNA replication-independent nucleosome assembly at centromere
GO:0031055; chromatin remodeling at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0016575; histone deacetylation
GO:0051382; kinetochore assembly
GO:0034501; protein localization to kinetochore
GO:0031066; regulation of histone deacetylation at centromere
GO:0005515; protein binding
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15369671; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RbAp46/RbAp48 ortholog; date=20090423 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mis16" ; product "kinetochore protein Mis16" ;
chromosome3 GeneDB CDS 584135 584219 . + . mRNA SPCC1672.10 ; colour "2" ;
chromosome3 GeneDB CDS 584292 584397 . + . mRNA SPCC1672.10 ; colour "2" ;
chromosome3 GeneDB CDS 584486 585587 . + . mRNA SPCC1672.10 ; colour "2" ;
chromosome3 GeneDB misc_feature 584220 584225 . + . misc_feature unknown_469 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 584270 584291 . + . misc_feature unknown_470 ; colour "6" ; note "ctgacgattatactcgtttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 584398 584403 . + . misc_feature unknown_471 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 584468 584485 . + . misc_feature unknown_472 ; colour "6" ; note "ctaactcgattcttgaag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 585588 585840 . + . mRNA SPCC1672.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.10" ; systematic_id "SPCC1672.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 585890 585905 . - . mRNA SPCC1672.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.11c" ; systematic_id "SPCC1672.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 585906 589853 . - . mRNA SPCC1672.11c ; db_xref "SPD:39/39D07" ; systematic_id "SPCC1672.11c" ; colour "7" ; GO "GO:0042626; ATPase activity, coupled to transmembrane movement of substances" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR291W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1672.11c" ; product "P-type ATPase P5 type (predicted)" ;
chromosome3 GeneDB CDS 585906 589853 . - . mRNA SPCC1672.11c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 589852 589908 . - . mRNA SPCC1672.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.11c" ; systematic_id "SPCC1672.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 590128 590325 . - . mRNA SPCC1672.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.12c" ; systematic_id "SPCC1672.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 590326 591654 . - . mRNA SPCC1672.12c ; systematic_id "SPCC1672.12c" ; colour "7" ; gene "SPCC1672.12c ||| get4" ; Alias "get4" ; db_xref "SPD:20/20F01" ; GO "GO:0045048; protein insertion into ER membrane
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR164C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c7orf20 ortholog; date=20091006" ; primary_name "get4" ; product "ER membrane insertion protein Get4 (predicted)" ;
chromosome3 GeneDB CDS 590326 590457 . - . mRNA SPCC1672.12c ; colour "7" ;
chromosome3 GeneDB CDS 590566 590951 . - . mRNA SPCC1672.12c ; colour "7" ;
chromosome3 GeneDB CDS 590997 591067 . - . mRNA SPCC1672.12c ; colour "7" ;
chromosome3 GeneDB CDS 591183 591258 . - . mRNA SPCC1672.12c ; colour "7" ;
chromosome3 GeneDB CDS 591322 591482 . - . mRNA SPCC1672.12c ; colour "7" ;
chromosome3 GeneDB CDS 591522 591575 . - . mRNA SPCC1672.12c ; colour "7" ;
chromosome3 GeneDB CDS 591623 591654 . - . mRNA SPCC1672.12c ; colour "7" ;
chromosome3 GeneDB misc_feature 590458 590479 . - . misc_feature unknown_473 ; colour "6" ; note "ctaacaaatttttttactacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 590560 590565 . - . misc_feature unknown_474 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 590952 590967 . - . misc_feature unknown_475 ; colour "6" ; note "ttaacacataatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 590991 590996 . - . misc_feature unknown_476 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 591068 591081 . - . misc_feature unknown_477 ; colour "6" ; note "ctaatgatgaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 591177 591182 . - . misc_feature unknown_478 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 591259 591269 . - . misc_feature unknown_479 ; colour "6" ; note "ctaattcacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 591316 591321 . - . misc_feature unknown_480 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 591483 591506 . - . misc_feature unknown_481 ; colour "6" ; note "ttgatcaatgaataaccgagcaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 591516 591521 . - . misc_feature unknown_482 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 591562 594487 . + . misc_feature unknown_483 ; note "nominal overlap with cosmid SPCC1183 and cosmid SPCC1672" ;
chromosome3 GeneDB misc_feature 591576 591587 . - . misc_feature unknown_484 ; colour "6" ; note "ttgacaatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 591617 591622 . - . misc_feature unknown_485 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 591653 591720 . - . mRNA SPCC1672.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1672.12c" ; systematic_id "SPCC1672.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 591775 591851 . + . mRNA SPCC1183.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.01" ; systematic_id "SPCC1183.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 591852 594435 . + . mRNA SPCC1183.01 ; systematic_id "SPCC1183.01" ; colour "7" ; gene "sec15 ||| SPCC1672.13 ||| SPCC1183.01" ; Alias "sec15" ; db_xref "SPD:38/38E05" ; synonym "SPCC1672.13" ; GO "GO:0000145; exocyst
GO:0006904; vesicle docking during exocytosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL233W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec15" ; product "exocyst complex subunit Sec15 (predicted)" ;
chromosome3 GeneDB CDS 591852 591884 . + . mRNA SPCC1183.01 ; colour "7" ;
chromosome3 GeneDB CDS 591925 592086 . + . mRNA SPCC1183.01 ; colour "7" ;
chromosome3 GeneDB CDS 592134 592253 . + . mRNA SPCC1183.01 ; colour "7" ;
chromosome3 GeneDB CDS 592353 592791 . + . mRNA SPCC1183.01 ; colour "7" ;
chromosome3 GeneDB CDS 592832 594435 . + . mRNA SPCC1183.01 ; colour "7" ;
chromosome3 GeneDB misc_feature 591885 591890 . + . misc_feature unknown_486 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 591910 591924 . + . misc_feature unknown_487 ; colour "6" ; note "ttgataaattggtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 592087 592092 . + . misc_feature unknown_488 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 592120 592133 . + . misc_feature unknown_489 ; colour "6" ; note "cttacaattattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 592254 592259 . + . misc_feature unknown_490 ; colour "6" ; note "gtgagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 592337 592352 . + . misc_feature unknown_491 ; colour "6" ; note "ctaacaattgtatcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 592792 592797 . + . misc_feature unknown_492 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 592811 592819 . + . misc_feature unknown_493 ; colour "6" ; note "ttaacattttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 592819 592831 . + . misc_feature unknown_494 ; colour "6" ; note "ttaacattttcag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 594436 594858 . + . mRNA SPCC1183.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.01" ; systematic_id "SPCC1183.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 595021 595059 . + . mRNA SPCC1183.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.02" ; systematic_id "SPCC1183.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 595060 596002 . + . mRNA SPCC1183.02 ; db_xref "SPD:13/13C03" ; systematic_id "SPCC1183.02" ; colour "7" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR201C and YKL081W and YPL048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=thioredoxin family; date=20081111" ; gene "SPCC1183.02" ; product "glutathione S-transferase (predicted)" ;
chromosome3 GeneDB CDS 595060 595212 . + . mRNA SPCC1183.02 ; colour "7" ;
chromosome3 GeneDB CDS 595493 596002 . + . mRNA SPCC1183.02 ; colour "7" ;
chromosome3 GeneDB misc_feature 595213 595218 . + . misc_feature unknown_495 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 595478 595492 . + . misc_feature unknown_496 ; colour "6" ; note "ctaattaattactag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 596003 596054 . + . mRNA SPCC1183.02 ; ID "SPCC1183.02" ; systematic_id "SPCC1183.02" ; note "mRNA from AU013839" ;
chromosome3 GeneDB 3'-UTR 596340 596367 . - . mRNA SPCC1183.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.03c" ; systematic_id "SPCC1183.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 596368 597078 . - . mRNA SPCC1183.03c ; db_xref "SPD:08/08D10" ; systematic_id "SPCC1183.03c" ; colour "7" ; GO "GO:0018283; iron incorporation into metallo-sulfur cluster
GO:0006879; iron ion homeostasis
GO:0005759; mitochondrial matrix
GO:0006800; oxygen and reactive oxygen species metabolism
GO:0030234; enzyme regulator activity
GO:0005506; iron ion binding
GO:0042592; homeostatic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Friedreich's ataxia; date=20060724 ||| term=orthologous to S. cerevisiae YDL120W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091217" ; gene "SPCC1183.03c" ; product "frataxin (predicted)" ;
chromosome3 GeneDB CDS 596368 596512 . - . mRNA SPCC1183.03c ; colour "7" ;
chromosome3 GeneDB CDS 596667 596761 . - . mRNA SPCC1183.03c ; colour "7" ;
chromosome3 GeneDB CDS 596842 597078 . - . mRNA SPCC1183.03c ; colour "7" ;
chromosome3 GeneDB misc_feature 596513 596527 . - . misc_feature unknown_497 ; colour "6" ; note "ctaacctaaaaccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 596661 596666 . - . misc_feature unknown_498 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 596762 596779 . - . misc_feature unknown_499 ; colour "6" ; note "ctaacactagatttgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 596836 596841 . - . misc_feature unknown_500 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 597077 597111 . - . mRNA SPCC1183.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.03c" ; systematic_id "SPCC1183.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 597496 597613 . - . mRNA SPCC1183.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.04c" ; systematic_id "SPCC1183.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 597614 599237 . - . mRNA SPCC1183.04c ; systematic_id "SPCC1183.04c" ; colour "2" ; gene "pet127 ||| SPCC1183.04c" ; Alias "pet127" ; db_xref "SPD:45/45D07" ; GO "GO:0005740; mitochondrial envelope
GO:0006396; RNA processing
GO:0009061; anaerobic respiration
GO:0043488; regulation of mRNA stability
GO:0043488; regulation of mRNA stability
GO:0043488; regulation of mRNA stability
GO:0000962; positive regulation of mitochondrial RNA catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070522 ||| term=orthologous to S. cerevisiae YOR017W; date=19700101 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820 ||| term=complementation, functionally complements S. cerevisiae PET127; db_xref=PMID:17292401; date=20101012" ; primary_name "pet127" ; product "mitochondrial RNA metabolism pathway protein Pet127" ;
chromosome3 GeneDB CDS 597614 599046 . - . mRNA SPCC1183.04c ; colour "2" ;
chromosome3 GeneDB CDS 599096 599237 . - . mRNA SPCC1183.04c ; colour "2" ;
chromosome3 GeneDB misc_feature 599047 599067 . - . misc_feature unknown_501 ; colour "6" ; note "ctaactaatttatttttgtag, splice branch and acceptor" ;
chromosome3 GeneDB intron 599047 599095 . - . intron SPCC1183.04c ; db_xref "PMID:17292401" ; systematic_id "SPCC1183.04c" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 599090 599095 . - . misc_feature unknown_502 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 599310 602803 . - . mRNA SPCC1183.05c ; systematic_id "SPCC1183.05c" ; colour "2" ; gene "lig4 ||| SPCC1183.05c" ; Alias "lig4" ; db_xref "SPD:30/30E05" ; GO "GO:0032807; DNA ligase IV complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0003910; DNA ligase (ATP) activity
GO:0006303; double-strand break repair via nonhomologous end joining" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, LIG4 syndrome; date=20070104 ||| term=BRCT domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lig4" ; product "DNA ligase Lig4" ;
chromosome3 GeneDB CDS 599310 599379 . - . mRNA SPCC1183.05c ; colour "2" ;
chromosome3 GeneDB CDS 599654 600061 . - . mRNA SPCC1183.05c ; colour "2" ;
chromosome3 GeneDB CDS 600101 600209 . - . mRNA SPCC1183.05c ; colour "2" ;
chromosome3 GeneDB CDS 600247 600378 . - . mRNA SPCC1183.05c ; colour "2" ;
chromosome3 GeneDB CDS 600416 600679 . - . mRNA SPCC1183.05c ; colour "2" ;
chromosome3 GeneDB CDS 600728 601885 . - . mRNA SPCC1183.05c ; colour "2" ;
chromosome3 GeneDB CDS 601940 602161 . - . mRNA SPCC1183.05c ; colour "2" ;
chromosome3 GeneDB CDS 602227 602326 . - . mRNA SPCC1183.05c ; colour "2" ;
chromosome3 GeneDB CDS 602367 602429 . - . mRNA SPCC1183.05c ; colour "2" ;
chromosome3 GeneDB CDS 602558 602803 . - . mRNA SPCC1183.05c ; colour "2" ;
chromosome3 GeneDB misc_feature 600045 600073 . - . misc_feature unknown_503 ; colour "6" ; note "ctaaccaattagtcttctcttttctaaag, splice branch and acc eptor" ;
chromosome3 GeneDB misc_feature 600205 600210 . - . misc_feature unknown_504 ; colour "6" ; note "gtatct, splice donor sequence" ;
chromosome3 GeneDB misc_feature 600379 600390 . - . misc_feature unknown_505 ; colour "6" ; note "ctaactctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 600410 600415 . - . misc_feature unknown_506 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 600680 600696 . - . misc_feature unknown_507 ; colour "6" ; note "ctaatctcttaatacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 600722 600727 . - . misc_feature unknown_508 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 601886 601906 . - . misc_feature unknown_509 ; colour "6" ; note "ctaacttttttatttctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 601934 601939 . - . misc_feature unknown_510 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 602162 602180 . - . misc_feature unknown_511 ; colour "6" ; note "ttaactgaaaaaaatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 602221 602226 . - . misc_feature unknown_512 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 602327 602338 . - . misc_feature unknown_513 ; colour "6" ; note "ctaattaacaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 602361 602366 . - . misc_feature unknown_514 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 602430 602441 . - . misc_feature unknown_515 ; colour "6" ; note "ctaattttctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 602552 602557 . - . misc_feature unknown_516 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 602802 602886 . - . mRNA SPCC1183.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.05c" ; systematic_id "SPCC1183.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 602995 603036 . + . mRNA SPCC1183.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.06" ; systematic_id "SPCC1183.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 603037 604129 . + . mRNA SPCC1183.06 ; systematic_id "SPCC1183.06" ; colour "2" ; gene "ung1 ||| SPCC1183.06" ; Alias "ung1" ; db_xref "SPD:17/17B07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML021C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004844; uracil DNA N-glycosylase activity
GO:0006281; DNA repair
GO:0005739; mitochondrion
GO:0005634; nucleus" ; primary_name "ung1" ; product "uracil DNA N-glycosylase Ung1" ; EC_number "3.2.2.-" ;
chromosome3 GeneDB CDS 603037 603263 . + . mRNA SPCC1183.06 ; colour "2" ;
chromosome3 GeneDB CDS 603321 603653 . + . mRNA SPCC1183.06 ; colour "2" ;
chromosome3 GeneDB CDS 603721 604129 . + . mRNA SPCC1183.06 ; colour "2" ;
chromosome3 GeneDB misc_feature 603264 603269 . + . misc_feature unknown_517 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 603308 603320 . + . misc_feature unknown_518 ; colour "6" ; note "ttaacctatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 603654 603659 . + . misc_feature unknown_519 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 603709 603720 . + . misc_feature unknown_520 ; colour "6" ; note "ctaatgaagcag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 604130 604260 . + . mRNA SPCC1183.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.06" ; systematic_id "SPCC1183.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 604405 604872 . - . mRNA SPCC1183.12 ; systematic_id "SPCC1183.12" ; colour "2" ; gene "spo13 ||| SPCC1183.12" ; Alias "spo13" ; obsolete_name "SPNCRNA.546" ; synonym "SPNGAF60" ; GO "GO:0005824; outer plaque of spindle pole body
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0030437; ascospore formation
GO:0031322; ascospore-type prospore-specific spindle pole body modification
GO:0005085; guanyl-nucleotide exchange factor activity
GO:0032120; ascospore-type prospore membrane assembly" ; controlled_curation "term=species distribution, orthologs cannot be distinguished; date=20080402 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18367542; date=20080402 ||| term=orthologous to S. cerevisiae YKR092C; date=20101020 ||| term=gene expression, expressed during meiosis; qualifier=specifically; db_xref=PMID:1836754; date=20101020 ||| term=phenotype, sporulation defects; db_xref=PMID:18367542; date=20101020" ; primary_name "spo13" ; product "sporulation specific protein Spo13" ;
chromosome3 GeneDB CDS 604405 604805 . - . mRNA SPCC1183.12 ; colour "2" ;
chromosome3 GeneDB CDS 604857 604872 . - . mRNA SPCC1183.12 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 606295 606336 . + . mRNA SPCC1183.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.07" ; systematic_id "SPCC1183.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 606337 611409 . + . mRNA SPCC1183.07 ; db_xref "SPD:31/31B04" ; systematic_id "SPCC1183.07" ; colour "7" ; GO "GO:0042134; rRNA primary transcript binding
GO:0030515; snoRNA binding
GO:0006364; rRNA processing
GO:0005732; small nucleolar ribonucleoprotein complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR229C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1183.07" ; product "U3 snoRNP-associated protein Rrp5 (predicted)" ;
chromosome3 GeneDB CDS 606337 611409 . + . mRNA SPCC1183.07 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 611410 611687 . + . mRNA SPCC1183.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.07" ; systematic_id "SPCC1183.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 611851 611899 . - . mRNA SPCC1183.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.08c" ; systematic_id "SPCC1183.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 611900 612550 . - . mRNA SPCC1183.08c ; systematic_id "SPCC1183.08c" ; colour "2" ; gene "rpl101 ||| rpl10-1 ||| rpl10a-1 ||| SPCC1183.08c" ; Alias "rpl101" ; db_xref "SPD:42/42F10" ; synonym "rpl1-1 ||| rpl10a-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL220W and YGL135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl101" ; product "60S ribosomal protein L10a" ;
chromosome3 GeneDB CDS 611900 612550 . - . mRNA SPCC1183.08c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 612549 612565 . - . mRNA SPCC1183.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.08c" ; systematic_id "SPCC1183.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 612898 613344 . - . mRNA SPCC1183.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.09c" ; systematic_id "SPCC1183.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 613345 613725 . - . mRNA SPCC1183.09c ; systematic_id "SPCC1183.09c" ; colour "2" ; gene "pmp31 ||| SPCC1183.09c ||| mug75" ; Alias "pmp31" ; db_xref "SPD:02/02G11" ; synonym "mug75" ; GO "GO:0005886; plasma membrane
GO:0030003; cation homeostasis
GO:0006812; cation transport
GO:0034605; cellular response to heat
GO:0042391; regulation of membrane potential
GO:0006970; response to osmotic stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16603158; date=20060412 ||| term=orthologous to S. cerevisiae YDR276C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "pmp31" ; product "plasma membrane proteolipid Pmp31" ;
chromosome3 GeneDB CDS 613345 613564 . - . mRNA SPCC1183.09c ; colour "2" ;
chromosome3 GeneDB CDS 613628 613725 . - . mRNA SPCC1183.09c ; colour "2" ;
chromosome3 GeneDB misc_feature 613565 613579 . - . misc_feature unknown_521 ; colour "6" ; note "ctgactttattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 613622 613627 . - . misc_feature unknown_522 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 613724 613940 . - . mRNA SPCC1183.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.09c" ; systematic_id "SPCC1183.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 614910 615258 . + . LTR unknown_523 ; colour "4" ; note "tf2 type LTR" ;
chromosome3 GeneDB repeat_region 615327 616830 . + . repeat_region unknown_524 ; note "wtf element" ;
chromosome3 GeneDB CDS_parts 615605 616689 . + . mRNA SPCC1183.10 ; Alias "wtf10" ; systematic_id "SPCC1183.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; colour "12" ; gene "wtf10 ||| SPCC1183.10" ; primary_name "wtf10" ; product "wtf element Wtf10" ;
chromosome3 GeneDB CDS 615605 615743 . + . mRNA SPCC1183.10 ; colour "12" ;
chromosome3 GeneDB CDS 615913 616158 . + . mRNA SPCC1183.10 ; colour "12" ;
chromosome3 GeneDB CDS 616208 616480 . + . mRNA SPCC1183.10 ; colour "12" ;
chromosome3 GeneDB CDS 616522 616563 . + . mRNA SPCC1183.10 ; colour "12" ;
chromosome3 GeneDB CDS 616613 616689 . + . mRNA SPCC1183.10 ; colour "12" ;
chromosome3 GeneDB misc_feature 615744 615749 . + . misc_feature unknown_525 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 615900 615912 . + . misc_feature unknown_526 ; colour "6" ; note "ttaatttaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 616159 616164 . + . misc_feature unknown_527 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 616196 616207 . + . misc_feature unknown_528 ; colour "6" ; note "ctaactcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 616481 616486 . + . misc_feature unknown_529 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 616510 616521 . + . misc_feature unknown_530 ; colour "6" ; note "ttaacaatacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 616564 616569 . + . misc_feature unknown_531 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 616599 616612 . + . misc_feature unknown_532 ; colour "6" ; note "ctaattatcattag, splice branch and acceptor" ;
chromosome3 GeneDB 5'-UTR 618894 620023 . + . mRNA SPCC1183.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.11" ; systematic_id "SPCC1183.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 620024 623059 . + . mRNA SPCC1183.11 ; systematic_id "SPCC1183.11" ; colour "7" ; gene "SPCC1183.11 ||| SPCC31H12.01" ; db_xref "SPD:29/29H05" ; synonym "SPCC31H12.01" ; GO "GO:0008381; mechanically-gated ion channel activity
GO:0034220; ion transmembrane transport
GO:0016021; integral to membrane
GO:0005509; calcium ion binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; product "MS ion channel protein 1 (predicted)" ;
chromosome3 GeneDB CDS 620024 623059 . + . mRNA SPCC1183.11 ; colour "7" ;
chromosome3 GeneDB misc_feature 620126 623561 . + . misc_feature unknown_533 ; note "nominal overlap with cosmid SPCC31H12 and cosmid SPCC1183" ;
chromosome3 GeneDB 3'-UTR 623060 623127 . + . mRNA SPCC1183.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1183.11" ; systematic_id "SPCC1183.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 623607 624527 . - . mRNA SPCC31H12.02c ; systematic_id "SPCC31H12.02c" ; colour "7" ; gene "SPCC31H12.02c ||| mug73" ; note "no evidence for chaperone activity of YCR021C" ; Alias "mug73" ; db_xref "SPD:12/12H01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal anchor; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR054W and YCR021C and YDR033W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Fungi only; date=20100827" ; GO "GO:0016021; integral to membrane
GO:0005216; ion channel activity
GO:0055085; transmembrane transport" ; primary_name "mug73" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB CDS 623607 624527 . - . mRNA SPCC31H12.02c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 625104 625487 . - . mRNA SPCC31H12.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC31H12.03c" ; systematic_id "SPCC31H12.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 625488 626225 . - . mRNA SPCC31H12.03c ; db_xref "SPD:08/08H10" ; systematic_id "SPCC31H12.03c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0016973; poly(A)+ mRNA export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SAP domain; date=19700101 ||| term=orthologous to S. cerevisiae YER063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC31H12.03c" ; product "RNA binding protein (predicted)" ;
chromosome3 GeneDB CDS 625488 626225 . - . mRNA SPCC31H12.03c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 626226 626276 . - . mRNA SPCC31H12.03c ; ID "SPCC31H12.03c" ; db_xref "EMBL:SPU73337" ; systematic_id "SPCC31H12.03c" ;
chromosome3 GeneDB 3'-UTR 627062 627211 . - . mRNA SPCC31H12.04c ; ID "SPCC31H12.04c" ; systematic_id "SPCC31H12.04c" ; note "mRNA from AU013691" ;
chromosome3 GeneDB CDS_parts 627212 627804 . - . mRNA SPCC31H12.04c ; systematic_id "SPCC31H12.04c" ; colour "2" ; gene "rpl1202 ||| rpl12 ||| rpl12-2 ||| SPCC31H12.04c" ; Alias "rpl1202" ; db_xref "SPD:06/06E04" ; synonym "rpl12-2 ||| rpl12" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000027; ribosomal large subunit assembly and maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL054C and YDR418W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=target of Set11; db_xref=PMID:18195021; date=20100629 ||| term=modification, methylated; cv=pt_mod; db_xref=PMID:18195021; date=20100629" ; primary_name "rpl1202" ; product "60S ribosomal protein L12.1/L12A" ;
chromosome3 GeneDB CDS 627212 627697 . - . mRNA SPCC31H12.04c ; colour "2" ;
chromosome3 GeneDB CDS 627793 627804 . - . mRNA SPCC31H12.04c ; colour "2" ;
chromosome3 GeneDB misc_feature 627698 627713 . - . misc_feature unknown_534 ; colour "6" ; note "ctaaccttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 627787 627792 . - . misc_feature unknown_535 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 628570 628995 . - . mRNA SPCC31H12.05c ; ID "SPCC31H12.05c" ; systematic_id "SPCC31H12.05c" ; note "mRNA from AU010789" ;
chromosome3 GeneDB CDS_parts 628996 630443 . - . mRNA SPCC31H12.05c ; systematic_id "SPCC31H12.05c" ; colour "2" ; gene "sds21 ||| SPCC31H12.05c" ; Alias "sds21" ; db_xref "SPD:23/23C11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER133W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0006364; rRNA processing" ; primary_name "sds21" ; product "serine/threonine protein phosphatase Sds21" ; EC_number "3.1.3.16" ;
chromosome3 GeneDB CDS 628996 629094 . - . mRNA SPCC31H12.05c ; colour "2" ;
chromosome3 GeneDB CDS 629146 629847 . - . mRNA SPCC31H12.05c ; colour "2" ;
chromosome3 GeneDB CDS 630218 630342 . - . mRNA SPCC31H12.05c ; colour "2" ;
chromosome3 GeneDB CDS 630401 630443 . - . mRNA SPCC31H12.05c ; colour "2" ;
chromosome3 GeneDB misc_feature 629095 629111 . - . misc_feature unknown_536 ; colour "6" ; note "ttaatactatgttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 629140 629145 . - . misc_feature unknown_537 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 629848 629861 . - . misc_feature unknown_538 ; colour "6" ; note "ctaataaataacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 630212 630217 . - . misc_feature unknown_539 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 630343 630359 . - . misc_feature unknown_540 ; colour "6" ; note "ctaacctcgtatcttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 630395 630400 . - . misc_feature unknown_541 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 630444 630719 . - . mRNA SPCC31H12.05c ; ID "SPCC31H12.05c" ; db_xref "PMID:18488015" ; systematic_id "SPCC31H12.05c" ; note "predicted from transcriptome data SPNG2161" ;
chromosome3 GeneDB intron 630720 630837 . - . intron unknown_542 ; db_xref "PMID:18488015" ;
chromosome3 GeneDB 5'-UTR 632090 632247 . + . mRNA SPCC31H12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC31H12.06" ; systematic_id "SPCC31H12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 632248 633654 . + . mRNA SPCC31H12.06 ; systematic_id "SPCC31H12.06" ; colour "8" ; gene "SPCC31H12.06 ||| mug111" ; db_xref "SPD:23/23B02" ; Alias "mug111" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug111" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 632248 633654 . + . mRNA SPCC31H12.06 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 633655 634018 . + . mRNA SPCC31H12.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC31H12.06" ; systematic_id "SPCC31H12.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 634292 634308 . + . mRNA SPCC31H12.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC31H12.07" ; systematic_id "SPCC31H12.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 634309 636761 . + . mRNA SPCC31H12.07 ; systematic_id "SPCC31H12.07" ; colour "7" ; db_xref "SPD:28/28G09" ; Alias "sec231" ; synonym "sec23a ||| SPCC5E4.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR181C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005096; GTPase activator activity
GO:0008270; zinc ion binding
GO:0006886; intracellular protein transport
GO:0030127; COPII vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030433; ER-associated protein catabolism" ; primary_name "sec231" ; product "COPII cargo receptor subunit Sec23a (predicted)" ;
chromosome3 GeneDB CDS 634309 634339 . + . mRNA SPCC31H12.07 ; colour "7" ;
chromosome3 GeneDB CDS 634389 634560 . + . mRNA SPCC31H12.07 ; colour "7" ;
chromosome3 GeneDB CDS 634620 634651 . + . mRNA SPCC31H12.07 ; colour "7" ;
chromosome3 GeneDB CDS 634717 636761 . + . mRNA SPCC31H12.07 ; colour "7" ;
chromosome3 GeneDB misc_feature 634340 634345 . + . misc_feature unknown_543 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 634373 634388 . + . misc_feature unknown_544 ; colour "6" ; note "ctgaccttgtttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 634561 634566 . + . misc_feature unknown_545 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 634605 634619 . + . misc_feature unknown_546 ; colour "6" ; note "ctaacaacattatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 634652 634657 . + . misc_feature unknown_547 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 634701 634716 . + . misc_feature unknown_548 ; colour "6" ; note "ctgacatatattctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 636569 640139 . + . misc_feature unknown_549 ; note "nominal overlap with cosmid SPCC5E4, EM:AL033406 S. pombe chromosome 3" ;
chromosome3 GeneDB 3'-UTR 636762 636930 . + . mRNA SPCC31H12.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC31H12.07" ; systematic_id "SPCC31H12.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 637461 639533 . - . mRNA SPCC31H12.08c ; systematic_id "SPCC31H12.08c" ; colour "2" ; gene "ccr4 ||| SPCC31H12.08c ||| SPCC5E4.02c" ; Alias "ccr4" ; db_xref "SPD:46/46E03" ; synonym "SPCC5E4.02c" ; GO "GO:0006354; RNA elongation
GO:0030015; CCR4-NOT core complex
GO:0000289; poly(A) tail shortening
GO:0000175; 3'-5'-exoribonuclease activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL021C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=leucine-rich repeat protein; date=20100727" ; primary_name "ccr4" ; product "CCR4-Not complex subunit Ccr4 (predicted)" ;
chromosome3 GeneDB CDS 637461 639533 . - . mRNA SPCC31H12.08c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 639532 639571 . - . mRNA SPCC31H12.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC31H12.08c" ; systematic_id "SPCC31H12.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 640145 642444 . - . mRNA SPCC5E4.03c ; systematic_id "SPCC5E4.03c" ; colour "2" ; gene "taf72 ||| SPCC5E4.03c ||| taf5" ; Alias "taf5" ; db_xref "SPD:38/38B09" ; synonym "taf72" ; GO "GO:0000124; SAGA complex
GO:0005669; transcription factor TFIID complex
GO:0005515; protein binding
GO:0016986; transcription initiation factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11279037; date=19700101 ||| term=orthologous to S. cerevisiae YBR198C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "taf5" ; product "SAGA complex subunit/TATA-binding protein associated factor/transcription factor TFIID complex subunit Taf5" ;
chromosome3 GeneDB CDS 640145 640241 . - . mRNA SPCC5E4.03c ; colour "2" ;
chromosome3 GeneDB CDS 640292 640556 . - . mRNA SPCC5E4.03c ; colour "2" ;
chromosome3 GeneDB CDS 640606 640774 . - . mRNA SPCC5E4.03c ; colour "2" ;
chromosome3 GeneDB CDS 640831 641924 . - . mRNA SPCC5E4.03c ; colour "2" ;
chromosome3 GeneDB CDS 642138 642444 . - . mRNA SPCC5E4.03c ; colour "2" ;
chromosome3 GeneDB misc_feature 640242 640258 . - . misc_feature unknown_550 ; colour "6" ; note "ctaaccttctcaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 640286 640291 . - . misc_feature unknown_551 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 640557 640571 . - . misc_feature unknown_552 ; colour "6" ; note "ctaatttgattaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 640600 640605 . - . misc_feature unknown_553 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 640775 640789 . - . misc_feature unknown_554 ; colour "6" ; note "ctgacttgtatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 640825 640830 . - . misc_feature unknown_555 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 641925 641938 . - . misc_feature unknown_556 ; colour "6" ; note "ctaacgtgctatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 642132 642137 . - . misc_feature unknown_557 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 642443 642542 . - . mRNA SPCC5E4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC5E4.03c" ; systematic_id "SPCC5E4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 643421 643811 . + . mRNA SPCC5E4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC5E4.04" ; systematic_id "SPCC5E4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 643812 649416 . + . mRNA SPCC5E4.04 ; systematic_id "SPCC5E4.04" ; colour "2" ; gene "cut1 ||| SPCC5E4.04" ; Alias "cut1" ; db_xref "SPD:31/31B09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005819; spindle
GO:0004197; cysteine-type endopeptidase activity
GO:0005515; protein binding
GO:0006302; double-strand break repair
GO:0045143; homologous chromosome segregation
GO:0000070; mitotic sister chromatid segregation
GO:0051306; mitotic sister chromatid separation
GO:0051306; mitotic sister chromatid separation
GO:0045842; positive regulation of mitotic metaphase/anaphase transition
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YGR098C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Rec8; db_xref=PMID:14532136; date=20100826 ||| term=target is Rad21; db_xref=PMID:14532136; date=20100826" ; primary_name "cut1" ; product "separase/separin" ;
chromosome3 GeneDB CDS 643812 645901 . + . mRNA SPCC5E4.04 ; colour "2" ;
chromosome3 GeneDB CDS 645941 646242 . + . mRNA SPCC5E4.04 ; colour "2" ;
chromosome3 GeneDB CDS 646284 646578 . + . mRNA SPCC5E4.04 ; colour "2" ;
chromosome3 GeneDB CDS 646617 649416 . + . mRNA SPCC5E4.04 ; colour "2" ;
chromosome3 GeneDB misc_feature 645902 645907 . + . misc_feature unknown_558 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 645930 645940 . + . misc_feature unknown_559 ; colour "6" ; note "ctgacatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 646243 646248 . + . misc_feature unknown_560 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 646270 646283 . + . misc_feature unknown_561 ; colour "6" ; note "ctaattgtttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 646579 646584 . + . misc_feature unknown_562 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 646604 646616 . + . misc_feature unknown_563 ; colour "6" ; note "ctaacgagctcag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 649417 649471 . + . mRNA SPCC5E4.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC5E4.04" ; systematic_id "SPCC5E4.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 649580 649655 . - . mRNA SPCC5E4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC5E4.05c" ; systematic_id "SPCC5E4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 649656 650792 . - . mRNA SPCC5E4.05c ; db_xref "SPD:43/43H02" ; systematic_id "SPCC5E4.05c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005811; lipid particle
GO:0005741; mitochondrial outer membrane
GO:0017171; serine hydrolase activity
GO:0006631; fatty acid metabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=abhydrolase family; date=19700101 ||| term=orthologous to S. cerevisiae YKL094W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC5E4.05c" ; product "mitochondrial serine hydrolase (predicted)" ;
chromosome3 GeneDB CDS 649656 650792 . - . mRNA SPCC5E4.05c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 650791 650846 . - . mRNA SPCC5E4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC5E4.05c" ; systematic_id "SPCC5E4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 651622 652455 . - . mRNA SPCC5E4.10c ; db_xref "SPD:02/02F05" ; systematic_id "SPCC5E4.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100319 ||| term=human LENG1 ortholog; date=20100319 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100319 ||| term=species distribution, conserved in Metazoa; date=20100319 ||| term=species distribution, conserved in Vertebrates; date=20100319 ||| term=species distribution, conserved in Eukaryotes only; date=20100319 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100319 ||| term=warning, gene structure updated; cv=warning; date=20100319" ; colour "10" ; gene "SPCC5E4.10c" ; product "human leukocyte receptor 1 ortholog" ;
chromosome3 GeneDB CDS 651622 651905 . - . mRNA SPCC5E4.10c ; colour "10" ;
chromosome3 GeneDB CDS 651973 652045 . - . mRNA SPCC5E4.10c ; colour "10" ;
chromosome3 GeneDB CDS 652115 652225 . - . mRNA SPCC5E4.10c ; colour "10" ;
chromosome3 GeneDB CDS 652280 652371 . - . mRNA SPCC5E4.10c ; colour "10" ;
chromosome3 GeneDB CDS 652419 652455 . - . mRNA SPCC5E4.10c ; colour "10" ;
chromosome3 GeneDB misc_feature 651906 651920 . - . misc_feature unknown_564 ; colour "6" ; note "ctaatttctttgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 651967 651972 . - . misc_feature unknown_565 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 652608 652782 . + . mRNA SPCC5E4.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC5E4.06" ; systematic_id "SPCC5E4.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 652783 656311 . + . mRNA SPCC5E4.06 ; systematic_id "SPCC5E4.06" ; colour "2" ; gene "smc6 ||| rad18 ||| SPCC5E4.06" ; Alias "smc6" ; db_xref "SPD:48/48D06" ; synonym "rad18" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0006281; DNA repair
GO:0005634; nucleus
GO:0046982; protein heterodimerization activity
GO:0006974; response to DNA damage stimulus
GO:0000724; double-strand break repair via homologous recombination
GO:0005515; protein binding
GO:0005515; protein binding
GO:0048478; replication fork protection" ; controlled_curation "term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:8524274; date=20100727 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YLR383W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, sumoylated; cv=pt_mod; db_xref=PMID:15601841; date=19700101" ; primary_name "smc6" ; product "Smc5-6 complex SMC subunit Smc6" ;
chromosome3 GeneDB CDS 652783 652893 . + . mRNA SPCC5E4.06 ; colour "2" ;
chromosome3 GeneDB CDS 653000 656311 . + . mRNA SPCC5E4.06 ; colour "2" ;
chromosome3 GeneDB misc_feature 652894 652899 . + . misc_feature unknown_566 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 652979 652999 . + . misc_feature unknown_567 ; colour "6" ; note "ttaatattttatttttaatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 656312 656346 . + . mRNA SPCC5E4.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC5E4.06" ; systematic_id "SPCC5E4.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 656625 657071 . + . mRNA SPCC5E4.07 ; systematic_id "SPCC5E4.07" ; colour "2" ; gene "rpl2802 ||| rpl28-2 ||| rpl28 ||| SPCC5E4.07" ; Alias "rpl2802" ; db_xref "SPD:03/03H06" ; synonym "rpl28-2 ||| rpl28" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL103W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl2802" ; product "60S ribosomal protein L27/L28" ;
chromosome3 GeneDB CDS 656625 657071 . + . mRNA SPCC5E4.07 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 657500 657703 . + . mRNA SPCC16C4.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.19" ; systematic_id "SPCC16C4.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 657704 658258 . + . mRNA SPCC16C4.19 ; systematic_id "SPCC16C4.19" ; colour "7" ; gene "SPCC5E4.08 ||| SPCC16C4.19" ; Alias "SPCC5E4.08" ; db_xref "SPD:05/05G05" ; synonym "SPCC5E4.08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR478W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Bacteria; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Vertebrates; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=human RPP21 ortholog; date=20100919 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100824" ; GO "GO:0006379; mRNA cleavage
GO:0000172; ribonuclease MRP complex
GO:0007346; reglation of mitotic cell cycle" ; primary_name "SPCC5E4.08" ; product "RNase MRP subunit (predicted)" ;
chromosome3 GeneDB CDS 657704 658258 . + . mRNA SPCC16C4.19 ; colour "7" ;
chromosome3 GeneDB misc_feature 657833 659568 . + . misc_feature unknown_568 ; note "nominal overlap with cosmid SPCC5E4 and cosmid SPCC16C4" ;
chromosome3 GeneDB CDS_parts 658832 660321 . + . mRNA SPCC16C4.01 ; systematic_id "SPCC16C4.01" ; colour "7" ; gene "SPCC16C4.01 ||| SPCC5E4.09 ||| sif2" ; Alias "sif2" ; db_xref "SPD:45/45C03" ; synonym "SPCC5E4.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL001W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031965; nuclear membrane
GO:0005816; spindle pole body
GO:0007127; meiosis" ; primary_name "sif2" ; product "Sad1 interacting factor 2 (predicted)" ; reserved_name "sif2" ;
chromosome3 GeneDB CDS 658832 659139 . + . mRNA SPCC16C4.01 ; colour "7" ;
chromosome3 GeneDB CDS 659223 659488 . + . mRNA SPCC16C4.01 ; colour "7" ;
chromosome3 GeneDB CDS 659567 659628 . + . mRNA SPCC16C4.01 ; colour "7" ;
chromosome3 GeneDB CDS 659709 660197 . + . mRNA SPCC16C4.01 ; colour "7" ;
chromosome3 GeneDB CDS 660298 660321 . + . mRNA SPCC16C4.01 ; colour "7" ;
chromosome3 GeneDB misc_feature 659140 659145 . + . misc_feature unknown_569 ; colour "6" ; note "gttagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 659208 659222 . + . misc_feature unknown_570 ; colour "6" ; note "ctaacattataacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 659489 659494 . + . misc_feature unknown_571 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 659546 659566 . + . misc_feature unknown_572 ; colour "6" ; note "ttaacatttgtaatttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 659547 659566 . + . misc_feature unknown_573 ; colour "6" ; note "ttaacatttgtaatttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 659629 659634 . + . misc_feature unknown_574 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 659696 659708 . + . misc_feature unknown_575 ; colour "6" ; note "ctaacagatatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 660740 660850 . - . mRNA SPCC16C4.20c ; ID "SPCC16C4.20c" ; systematic_id "SPCC16C4.20c" ; note "mRNA from spc00707" ;
chromosome3 GeneDB CDS_parts 660851 661181 . - . mRNA SPCC16C4.20c ; db_xref "SPD:01/01H06" ; systematic_id "SPCC16C4.20c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100919 ||| term=species distribution, conserved in Eukaryotes; date=20100919 ||| term=species distribution, conserved in Eukaryotes only; date=20100919 ||| term=species distribution, conserved in Metazoa; date=20100919 ||| term=species distribution, conserved in Vertebrates; date=20100919 ||| term=orthologous to S. cerevisiae YDL002C date=20100919 ||| term=human TBGR1 ortholog; date=20100919 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20101011" ; GO "GO:0031011; Ino80 complex
GO:0045027; DNA end binding
GO:0000404; loop DNA binding
GO:0006302; double-strand break repair
GO:0042766; nucleosome mobilization" ; gene "SPCC16C4.20c" ; product "Ino80 complex subunit (predicted)" ;
chromosome3 GeneDB CDS 660851 661044 . - . mRNA SPCC16C4.20c ; colour "7" ;
chromosome3 GeneDB CDS 661097 661124 . - . mRNA SPCC16C4.20c ; colour "7" ;
chromosome3 GeneDB CDS 661170 661181 . - . mRNA SPCC16C4.20c ; colour "7" ;
chromosome3 GeneDB misc_feature 661045 661064 . - . misc_feature unknown_576 ; colour "6" ; note "ctaatgaactcgacgtatag, splice branch and acceptor" ;
chromosome3 GeneDB intron 661045 661096 . - . intron SPCC16C4.20c ; systematic_id "SPCC16C4.20c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 661091 661096 . - . misc_feature unknown_577 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 661125 661136 . - . misc_feature unknown_578 ; colour "6" ; note "ttgaccgcgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 661164 661169 . - . misc_feature unknown_579 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 661180 661188 . - . mRNA SPCC16C4.20c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.20c" ; systematic_id "SPCC16C4.20c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 662010 662341 . - . mRNA SPCC16C4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.02c" ; systematic_id "SPCC16C4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 662342 663988 . - . mRNA SPCC16C4.02c ; db_xref "SPD:34/34F05" ; systematic_id "SPCC16C4.02c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Metazoa; date=20100806 ||| term=species distribution, conserved in Vertebrates; date=20100806 ||| term=species distribution, conserved in Eukaryotes only; date=20100806 ||| term=human NCDN ortholog; date=20100806" ; colour "10" ; gene "SPCC16C4.02c" ; product "DUF1941 family protein" ;
chromosome3 GeneDB CDS 662342 663988 . - . mRNA SPCC16C4.02c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 663987 664321 . - . mRNA SPCC16C4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.02c" ; systematic_id "SPCC16C4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 664542 664667 . + . mRNA SPCC16C4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.03" ; systematic_id "SPCC16C4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 664668 665340 . + . mRNA SPCC16C4.03 ; systematic_id "SPCC16C4.03" ; colour "2" ; gene "pin1 ||| SPCC16C4.03" ; Alias "pin1" ; db_xref "SPD:07/07G06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11707530; date=19700101 ||| term=orthologous to S. cerevisiae YJR017C; date=19700101 ||| term=complementation, functionally complements S. cerevisiae ESS1; db_xref=PMID:11707530; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005634; nucleus
GO:0003755; peptidyl-prolyl cis-trans isomerase activity
GO:0031124; mRNA 3'-end processing
GO:0006457; protein folding
GO:0007346; regulation of progression through mitotic cell cycle
GO:0003711; transcription elongation regulator activity
GO:0000122; negative regulation of transcription form RNA polymerase II promoter
GO:0006369; termination of RNA polymerase II transcription" ; primary_name "pin1" ; product "peptidyl-prolyl cis-trans isomerase Pin1" ; EC_number "5.2.1.8" ;
chromosome3 GeneDB CDS 664668 665068 . + . mRNA SPCC16C4.03 ; colour "2" ;
chromosome3 GeneDB CDS 665214 665340 . + . mRNA SPCC16C4.03 ; colour "2" ;
chromosome3 GeneDB misc_feature 665069 665074 . + . misc_feature unknown_580 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 665198 665213 . + . misc_feature unknown_581 ; colour "6" ; note "ctaacactatgtgtag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 665341 665951 . + . mRNA SPCC16C4.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.03" ; systematic_id "SPCC16C4.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 667171 668069 . + . mRNA SPCC16C4.04 ; db_xref "SPD:12/12C10" ; systematic_id "SPCC16C4.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC16C4.04" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 667171 667433 . + . mRNA SPCC16C4.04 ; colour "8" ;
chromosome3 GeneDB CDS 667479 667683 . + . mRNA SPCC16C4.04 ; colour "8" ;
chromosome3 GeneDB CDS 667737 668069 . + . mRNA SPCC16C4.04 ; colour "8" ;
chromosome3 GeneDB misc_feature 667434 667439 . + . misc_feature unknown_582 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 667466 667478 . + . misc_feature unknown_583 ; colour "6" ; note "ttaacgtgaccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 667684 667689 . + . misc_feature unknown_584 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 667725 667736 . + . misc_feature unknown_585 ; colour "6" ; note "ctaactgtttag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 668586 669306 . + . mRNA SPCC16C4.05 ; db_xref "SPD:08/08E10" ; systematic_id "SPCC16C4.05" ; colour "7" ; GO "GO:0000171; ribonuclease MRP activity
GO:0004526; ribonuclease P activity
GO:0006364; rRNA processing
GO:0008033; tRNA processing
GO:0005655; nucleolar ribonuclease P complex
GO:0000172; ribonuclease MRP complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL282W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC16C4.05" ; product "RNase P and RNase MRP subunit (predicted)" ;
chromosome3 GeneDB CDS 668586 668656 . + . mRNA SPCC16C4.05 ; colour "7" ;
chromosome3 GeneDB CDS 668718 669063 . + . mRNA SPCC16C4.05 ; colour "7" ;
chromosome3 GeneDB CDS 669118 669306 . + . mRNA SPCC16C4.05 ; colour "7" ;
chromosome3 GeneDB misc_feature 668657 668662 . + . misc_feature unknown_586 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 668702 668717 . + . misc_feature unknown_587 ; colour "6" ; note "ctaaccataccgttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 669064 669069 . + . misc_feature unknown_588 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 669103 669117 . + . misc_feature unknown_589 ; colour "6" ; note "ttgactatattttag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 669467 670760 . - . mRNA SPCC16C4.06c ; db_xref "SPD:22/22E02" ; systematic_id "SPCC16C4.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL212C and YGL063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006400; tRNA modification
GO:0009982; pseudouridine synthase activity
GO:0005634; nucleus" ; gene "SPCC16C4.06c" ; product "tRNA pseudouridine synthase (predicted)" ; EC_number "4.2.1.70" ;
chromosome3 GeneDB CDS 669467 669584 . - . mRNA SPCC16C4.06c ; colour "7" ;
chromosome3 GeneDB CDS 669637 670760 . - . mRNA SPCC16C4.06c ; colour "7" ;
chromosome3 GeneDB misc_feature 669585 669596 . - . misc_feature unknown_590 ; colour "6" ; note "ttaatgtctcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 669631 669636 . - . misc_feature unknown_591 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 671287 673475 . - . misc_feature unknown_592 ; note "low complexity region" ;
chromosome3 GeneDB CDS_parts 671310 671555 . + . mRNA SPCC16C4.21 ; systematic_id "SPCC16C4.21" ; colour "6" ; gene "SPCC16C4.21" ; product "dubious" ; note "previously predicted protein TR:Q09185, on the 54/1 promoter fragment, but this is 5' of the promoter there is no evidence that it is coding, as it has short length, very low coding potential and no homology" ;
chromosome3 GeneDB CDS 671310 671555 . + . mRNA SPCC16C4.21 ; colour "6" ;
chromosome3 GeneDB CDS_parts 673476 675161 . + . mRNA SPCC16C4.07 ; systematic_id "SPCC16C4.07" ; colour "2" ; gene "scw1 ||| SPCC16C4.07" ; db_xref "SPD:35/35C03" ; Alias "scw1" ; GO "GO:0005737; cytoplasm
GO:0032955; barrier septum formation involved in cell cycle cytokinesis
; regulation of fungal type cell wall biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12242222; date=19700101 ||| term=orthologous to S. cerevisiae YNL197C and YDL224C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "scw1" ; product "RNA-binding protein Scw1" ;
chromosome3 GeneDB CDS 673476 675161 . + . mRNA SPCC16C4.07 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 675162 675251 . + . mRNA SPCC16C4.07 ; ID "SPCC16C4.07" ; systematic_id "SPCC16C4.07" ; note "mRNA from AU011780" ;
chromosome3 GeneDB 3'-UTR 675369 675764 . - . mRNA SPCC16C4.08c ; ID "SPCC16C4.08c" ; systematic_id "SPCC16C4.08c" ; note "mRNA from spc06443 1 147" ;
chromosome3 GeneDB CDS_parts 675765 677026 . - . mRNA SPCC16C4.08c ; systematic_id "SPCC16C4.08c" ; colour "2" ; gene "skb15 ||| SPCC16C4.08c" ; Alias "skb15" ; db_xref "SPD:20/20B08" ; GO "GO:0005515; protein binding
GO:0070507; regulation of microtubule cytoskeleton organization
GO:0071775; regulation of cell cycle cytokinesis
GO:0005634; nucleus
GO:0030685; nucleolar preribosome
GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL021C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Shk1 Kinase Binding protein; date=20101101 ||| term=human PAK1IP1 ortholog; date=20110113" ; primary_name "skb15" ; product "p21 activated protein kinase inhibitor Skb15" ;
chromosome3 GeneDB CDS 675765 676068 . - . mRNA SPCC16C4.08c ; colour "2" ;
chromosome3 GeneDB CDS 676133 676290 . - . mRNA SPCC16C4.08c ; colour "2" ;
chromosome3 GeneDB CDS 676360 676750 . - . mRNA SPCC16C4.08c ; colour "2" ;
chromosome3 GeneDB CDS 676854 677026 . - . mRNA SPCC16C4.08c ; colour "2" ;
chromosome3 GeneDB misc_feature 676069 676081 . - . misc_feature unknown_593 ; colour "6" ; note "ctaatcaagttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 676127 676132 . - . misc_feature unknown_594 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 676291 676305 . - . misc_feature unknown_595 ; colour "6" ; note "ctaatacatttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 676354 676359 . - . misc_feature unknown_596 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 676751 676765 . - . misc_feature unknown_597 ; colour "6" ; note "ctaacatcgtttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 676848 676853 . - . misc_feature unknown_598 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 677025 677136 . - . mRNA SPCC16C4.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.08c" ; systematic_id "SPCC16C4.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 677382 678918 . + . misc_RNA SPNCRNA.469 ; db_xref "PMID:18488015" ; synonym "SPNG2183" ; systematic_id "SPNCRNA.469" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 679277 680361 . + . mRNA SPCC16C4.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.09" ; systematic_id "SPCC16C4.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 680362 683562 . + . mRNA SPCC16C4.09 ; systematic_id "SPCC16C4.09" ; colour "2" ; gene "sts5 ||| orb4 ||| SPCC16C4.09" ; Alias "sts5" ; db_xref "SPD:48/48A05" ; synonym "orb4" ; GO "GO:0005737; cytoplasm
GO:0003723; RNA binding
GO:0004540; ribonuclease activity
GO:0006401; RNA catabolic process
GO:0034613; cellular protein localization
; regulation of maintenance of bipolar cell polarity during cell shaping" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8886983; date=19700101 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:8886983; date=20100731 ||| term=phenotype, cell morphology, stubby cells; qualifier=at_low_temperature; db_xref=PMID:8886983; date=20100731 ||| term=pathway, distinct from protein kinase C pathway and osmosensing MAP-kinase pathway; cv=pathway; db_xref=PMID:8886983; date=19700101 ||| term=target of staurosporine; date=19700101 ||| term=orthologous to S. cerevisiae YDR293C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sts5" ; product "RNB-like protein" ;
chromosome3 GeneDB CDS 680362 683562 . + . mRNA SPCC16C4.09 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 683563 684083 . + . mRNA SPCC16C4.09 ; ID "SPCC16C4.09" ; systematic_id "SPCC16C4.09" ; note "mRNA from AU013491" ;
chromosome3 GeneDB 5'-UTR 684621 684827 . + . mRNA SPCC16C4.22 ; ID "SPCC16C4.22" ; db_xref "PMID:18488015" ; systematic_id "SPCC16C4.22" ;
chromosome3 GeneDB CDS_parts 684828 685192 . + . mRNA SPCC16C4.22 ; obsolete_name "SPNCRNA.470 ||| SPNG2185" ; db_xref "PMID:18488015" ; systematic_id "SPCC16C4.22" ; controlled_curation "term=histone fold; date=20080102 ||| term=species distribution, orthologs cannot be distinguished; date=20080102 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "10" ; GO "GO:0030528; transcription regulator activity
GO:0006350; transcription" ; gene "SPCC16C4.22" ; product "histone-like transcription factor family (CBF/NF- Y)" ;
chromosome3 GeneDB CDS 684828 684947 . + . mRNA SPCC16C4.22 ; colour "10" ;
chromosome3 GeneDB CDS 685049 685192 . + . mRNA SPCC16C4.22 ; colour "10" ;
chromosome3 GeneDB intron 684948 685048 . + . intron SPCC16C4.22 ; systematic_id "SPCC16C4.22" ; note "confirmed by Solexa transread data PMID:18488015" ;
chromosome3 GeneDB 3'-UTR 685193 685496 . + . mRNA SPCC16C4.22 ; ID "SPCC16C4.22" ; obsolete_name "SPNCRNA.470" ; systematic_id "SPCC16C4.22" ; synonym "SPNG2185" ; note "mRNA from spc06428 is contained within this feature" ;
chromosome3 GeneDB 5'-UTR 685880 685900 . + . mRNA SPCC16C4.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.10" ; systematic_id "SPCC16C4.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 685901 686792 . + . mRNA SPCC16C4.10 ; systematic_id "SPCC16C4.10" ; colour "7" ; gene "SPCC16C4.10" ; note "Pentose phosphate shunt enzymes are cytoplasmic (Bohringer metabolic pathways)" ; db_xref "KEGG:MAP00030; ||| SPD:12/12B06" ; GO "GO:0009051; pentose-phosphate shunt, oxidative branch
GO:0017057; 6-phosphogluconolactonase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR034W and YCR073W-A and YHR163W and YGR248W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "6-phosphogluconolactonase (predicted)" ; EC_number "3.1.1.31" ;
chromosome3 GeneDB CDS 685901 686085 . + . mRNA SPCC16C4.10 ; colour "7" ;
chromosome3 GeneDB CDS 686204 686792 . + . mRNA SPCC16C4.10 ; colour "7" ;
chromosome3 GeneDB misc_feature 686086 686091 . + . misc_feature unknown_599 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 686187 686203 . + . misc_feature unknown_600 ; colour "6" ; note "ttaacagctctatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 686793 687201 . + . mRNA SPCC16C4.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.10" ; systematic_id "SPCC16C4.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 687754 688671 . + . mRNA SPCC16C4.11 ; systematic_id "SPCC16C4.11" ; colour "2" ; gene "pef1 ||| SPCC16C4.11" ; Alias "pef1" ; db_xref "SPD:12/12G05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YPL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=CDK family kinase; date=20090122 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0004693; cyclin-dependent protein kinase activity
GO:0005515; protein binding
GO:0000083; positive regulation of transcription involved in G1/S-phase of mitotic cell cycle
GO:0007165; signal transduction
GO:0007089; traversing start control point of mitotic cell cycle" ; primary_name "pef1" ; product "Pho85/PhoA-like cyclin-dependent kinase Pef1" ; EC_number "2.7.1.-" ;
chromosome3 GeneDB CDS 687754 687781 . + . mRNA SPCC16C4.11 ; colour "2" ;
chromosome3 GeneDB CDS 687833 688671 . + . mRNA SPCC16C4.11 ; colour "2" ;
chromosome3 GeneDB misc_feature 687782 687787 . + . misc_feature unknown_601 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 687820 687832 . + . misc_feature unknown_602 ; colour "6" ; note "ttaacttaagtag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 689568 690167 . + . mRNA SPCC16C4.12 ; systematic_id "SPCC16C4.12" ; colour "7" ; gene "SPCC16C4.12 ||| naa20" ; Alias "naa20" ; db_xref "SPD:06/06F08" ; synonym "nat3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR131C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; GO "GO:0031416; NatB complex
GO:0005737; cytoplasm
GO:0004596; peptide alpha-N-acetyltransferase activity
GO:0017196; N-terminal peptidyl-methionine acetylation
GO:0007010; cytoskeleton organization and biogenesis
GO:0006897; endocytosis
GO:0007005; mitochondrion organization and biogenesis" ; primary_name "naa20" ; product "NatB N-acetyltransferase complex catalytic subunit Naa20 (predicted)" ;
chromosome3 GeneDB CDS 689568 689645 . + . mRNA SPCC16C4.12 ; colour "7" ;
chromosome3 GeneDB CDS 689703 690167 . + . mRNA SPCC16C4.12 ; colour "7" ;
chromosome3 GeneDB misc_feature 689646 689651 . + . misc_feature unknown_603 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 689683 689702 . + . misc_feature unknown_604 ; colour "6" ; note "ttaactcgaacaacttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 690168 690283 . + . mRNA SPCC16C4.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.12" ; systematic_id "SPCC16C4.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 690505 691071 . + . misc_RNA SPNCRNA.471 ; db_xref "PMID:18488015" ; synonym "SPNG2186" ; systematic_id "SPNCRNA.471" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 3'-UTR 691105 691134 . - . mRNA SPCC16C4.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.13c" ; systematic_id "SPCC16C4.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 691135 691632 . - . mRNA SPCC16C4.13c ; systematic_id "SPCC16C4.13c" ; colour "2" ; gene "rpl1201 ||| rpl12-1 ||| rpl12.1 ||| SPCC16C4.13c" ; Alias "rpl1201" ; db_xref "SPD:04/04G12" ; synonym "rpl12-1 ||| rpl12.1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000027; ribosomal large subunit assembly and maintenance" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL054C and YDR418W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=target of Set11; db_xref=PMID:18195021; date=20100629 ||| term=modification, methylated; cv=pt_mod; db_xref=PMID:18195021; date=20100629" ; primary_name "rpl1201" ; product "60S ribosomal protein L12.1/L12A" ;
chromosome3 GeneDB CDS 691135 691632 . - . mRNA SPCC16C4.13c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 691631 691657 . - . mRNA SPCC16C4.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.13c" ; systematic_id "SPCC16C4.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 691825 694845 . - . mRNA SPCC16C4.14c ; systematic_id "SPCC16C4.14c" ; colour "2" ; gene "sfc4 ||| SPCC16C4.14c" ; Alias "sfc4" ; db_xref "SPD:47/47G04" ; GO "GO:0000127; transcription factor TFIIIC complex
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003709; RNA polymerase III transcription factor activity
GO:0043035; chromatin insulator sequence binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=20070216 ||| term=orthologous to S. cerevisiae YGR047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "sfc4" ; product "transcription factor TFIIIC complex subunit Sfc4" ;
chromosome3 GeneDB CDS 691825 694845 . - . mRNA SPCC16C4.14c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 694844 694903 . - . mRNA SPCC16C4.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.14c" ; systematic_id "SPCC16C4.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 695960 696053 . + . mRNA SPCC16C4.15 ; ID "SPCC16C4.15" ; systematic_id "SPCC16C4.15" ; note "mRNA from spc00261 235 112" ;
chromosome3 GeneDB CDS_parts 696054 697083 . + . mRNA SPCC16C4.15 ; systematic_id "SPCC16C4.15" ; colour "7" ; gene "SPCC16C4.15 ||| rml2" ; Alias "rml2" ; db_xref "SPD:15/15E12" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rml2" ; product "mitochondrial ribosomal protein subunit L2 (predicted)" ;
chromosome3 GeneDB CDS 696054 696083 . + . mRNA SPCC16C4.15 ; colour "7" ;
chromosome3 GeneDB CDS 696157 697083 . + . mRNA SPCC16C4.15 ; colour "7" ;
chromosome3 GeneDB misc_feature 696084 696089 . + . misc_feature unknown_605 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 696142 696156 . + . misc_feature unknown_606 ; colour "6" ; note "ctaattcttatcaag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 697084 697482 . + . mRNA SPCC16C4.15 ; ID "SPCC16C4.15" ; systematic_id "SPCC16C4.15" ; note "mRNA from spc09468 331 7" ;
chromosome3 GeneDB CDS_parts 697605 698399 . - . mRNA SPCC16C4.16c ; db_xref "SPD:05/05D11" ; systematic_id "SPCC16C4.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Metazoa; date=20100806 ||| term=species distribution, conserved in Vertebrates; date=20100806 ||| term=species distribution, conserved in Eukaryotes only; date=20100806 ||| term=human c17orf85 ortholog; date=20100806" ; colour "10" ; gene "SPCC16C4.16c" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 697605 697752 . - . mRNA SPCC16C4.16c ; colour "10" ;
chromosome3 GeneDB CDS 697875 698127 . - . mRNA SPCC16C4.16c ; colour "10" ;
chromosome3 GeneDB CDS 698180 698399 . - . mRNA SPCC16C4.16c ; colour "10" ;
chromosome3 GeneDB misc_feature 698128 698149 . - . misc_feature unknown_607 ; colour "6" ; note "ctaactctataaccgcgtatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 698174 698179 . - . misc_feature unknown_608 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 698400 698599 . - . mRNA SPCC16C4.16c ; ID "SPCC16C4.16c" ; systematic_id "SPCC16C4.16c" ; note "mRNA from spc06556 275 451" ;
chromosome3 GeneDB 5'-UTR 698807 699037 . + . mRNA SPCC16C4.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.17" ; systematic_id "SPCC16C4.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 699038 699745 . + . mRNA SPCC16C4.17 ; systematic_id "SPCC16C4.17" ; colour "2" ; gene "mug123 ||| SPCC16C4.17" ; Alias "mug123" ; db_xref "SPD:08/08D06" ; GO "GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug123" ; product "meiotically upregulated gene Mug123" ;
chromosome3 GeneDB CDS 699038 699745 . + . mRNA SPCC16C4.17 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 699746 699908 . + . mRNA SPCC16C4.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.17" ; systematic_id "SPCC16C4.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 700016 700164 . - . mRNA SPCC16C4.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.18c" ; systematic_id "SPCC16C4.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 700165 701681 . - . mRNA SPCC16C4.18c ; systematic_id "SPCC16C4.18c" ; colour "2" ; gene "taf50 ||| SPCC16C4.18c ||| taf6" ; Alias "taf6" ; db_xref "SPD:24/24F04" ; synonym "taf50" ; GO "GO:0000124; SAGA complex
GO:0005669; transcription factor TFIID complex
GO:0005515; protein binding
GO:0006338; chromatin remodeling
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016573; histone acetylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; db_xref=PMID:11972332; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11972332; date=19700101 ||| term=orthologous to S. cerevisiae YGL112C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "taf6" ; product "histone H4-like TAF Taf6, SAGA complex subunit" ;
chromosome3 GeneDB CDS 700165 701391 . - . mRNA SPCC16C4.18c ; colour "2" ;
chromosome3 GeneDB CDS 701550 701681 . - . mRNA SPCC16C4.18c ; colour "2" ;
chromosome3 GeneDB misc_feature 701392 701410 . - . misc_feature unknown_609 ; colour "6" ; note "ctaacagtatttgatttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 701392 701549 . - . intron SPCC16C4.18c ; systematic_id "SPCC16C4.18c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 701544 701549 . - . misc_feature unknown_610 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 701680 701721 . - . mRNA SPCC16C4.18c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16C4.18c" ; systematic_id "SPCC16C4.18c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 701782 702130 . + . LTR unknown_611 ; note "Tf2-type LTR" ;
chromosome3 GeneDB LTR 702136 702501 . + . LTR unknown_612 ; note "degraded tf1-type LTR" ;
chromosome3 GeneDB misc_feature 702468 702583 . + . misc_feature unknown_613 ; note "nominal overlap with SPCC16C4 S. pombe chromosome 3" ;
chromosome3 GeneDB CDS_parts 702607 704337 . + . mRNA SPCPJ732.01 ; systematic_id "SPCPJ732.01" ; colour "2" ; gene "vps5 ||| SPCPJ732.01" ; Alias "vps5" ; db_xref "SPD:49/49B09" ; GO "GO:0005768; endosome
GO:0005768; endosome
GO:0031965; nuclear membrane
GO:0005628; prospore membrane
GO:0030904; retromer complex
GO:0030904; retromer complex
GO:0035091; phosphoinositide binding
GO:0006886; intracellular protein transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0030437; sporulation (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR069W; date=19700101 ||| term=localization dependent on Pik3; db_xref=PMID:15189449; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "vps5" ; product "retromer complex subunit Vps5" ;
chromosome3 GeneDB CDS 702607 704337 . + . mRNA SPCPJ732.01 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 704853 704972 . - . mRNA SPCPJ732.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPJ732.02c" ; systematic_id "SPCPJ732.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 704973 706776 . - . mRNA SPCPJ732.02c ; db_xref "SPD:49/49C07" ; systematic_id "SPCPJ732.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR194C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004856; xylulokinase activity
GO:0005998; xylulose catabolic process" ; gene "SPCPJ732.02c" ; product "xylulose kinase (predicted)" ; EC_number "2.7.1.17" ;
chromosome3 GeneDB CDS 704973 705176 . - . mRNA SPCPJ732.02c ; colour "7" ;
chromosome3 GeneDB CDS 705228 705722 . - . mRNA SPCPJ732.02c ; colour "7" ;
chromosome3 GeneDB CDS 705808 706776 . - . mRNA SPCPJ732.02c ; colour "7" ;
chromosome3 GeneDB misc_feature 705177 705192 . - . misc_feature unknown_614 ; colour "6" ; note "ctgaccatcaatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 705222 705227 . - . misc_feature unknown_615 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 705723 705738 . - . misc_feature unknown_616 ; colour "6" ; note "ctaacatggactttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 705802 705807 . - . misc_feature unknown_617 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 706775 706946 . - . mRNA SPCPJ732.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPJ732.02c" ; systematic_id "SPCPJ732.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 708064 708196 . + . mRNA SPCPJ732.03 ; ID "SPCPJ732.03" ; systematic_id "SPCPJ732.03" ; note "mRNA from AB054299" ;
chromosome3 GeneDB intron 708197 708329 . + . intron unknown_618 ; note "intron in 5'UTR confirmed by mRNA from AB054299" ;
chromosome3 GeneDB CDS_parts 708340 708890 . + . mRNA SPCPJ732.03 ; systematic_id "SPCPJ732.03" ; colour "8" ; gene "meu15 ||| SPCPJ732.03" ; db_xref "SPD:41/41D03" ; Alias "meu15" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; qualifier=predicted; db_xref=PMID:11376151; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu15" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 708340 708616 . + . mRNA SPCPJ732.03 ; colour "8" ;
chromosome3 GeneDB CDS 708675 708728 . + . mRNA SPCPJ732.03 ; colour "8" ;
chromosome3 GeneDB CDS 708769 708890 . + . mRNA SPCPJ732.03 ; colour "8" ;
chromosome3 GeneDB misc_feature 708493 708498 . + . misc_feature unknown_619 ; colour "6" ; note "gtactg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 708617 708622 . + . misc_feature unknown_620 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 708617 708674 . + . intron SPCPJ732.03 ; systematic_id "SPCPJ732.03" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 708663 708674 . + . misc_feature unknown_621 ; colour "6" ; note "ctaatcgtctag, splice branch and acceptor" ;
chromosome3 GeneDB intron 708729 708768 . + . intron SPCPJ732.03 ; systematic_id "SPCPJ732.03" ; note "confirmed" ;
chromosome3 GeneDB 3'-UTR 708891 709145 . + . mRNA SPCPJ732.03 ; ID "SPCPJ732.03" ; systematic_id "SPCPJ732.03" ; note "mRNA from AB054299" ;
chromosome3 GeneDB 3'-UTR 709302 709414 . - . mRNA SPCC18B5.01c ; ID "SPCC18B5.01c" ; systematic_id "SPCC18B5.01c" ; note "mRNA from AU011775" ;
chromosome3 GeneDB CDS_parts 709415 714007 . - . mRNA SPCC18B5.01c ; systematic_id "SPCC18B5.01c" ; colour "2" ; db_xref "SPD:49/49H06" ; Alias "bfr1" ; synonym "hba2 ||| SPCPJ732.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20060721 ||| term=ABC transporter family; date=19700101 ||| term=PDR subfamily; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR011W and YNR070W and YPL058C and YOR328W and YOR153W and YDR406W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005886; plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport
GO:0042626; ATPase activity, coupled to transmembrane movement of substances" ; primary_name "bfr1" ; product "brefeldin A efflux transporter Bfr1" ;
chromosome3 GeneDB CDS 709415 714007 . - . mRNA SPCC18B5.01c ; colour "2" ;
chromosome3 GeneDB misc_feature 712139 712237 . + . misc_feature unknown_622 ; note "nominal overlap with SPCC18B5 S. pombe chromosome 3" ;
chromosome3 GeneDB 5'-UTR 714006 715415 . - . mRNA SPCC18B5.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18B5.01c" ; systematic_id "SPCC18B5.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 715986 717312 . + . misc_RNA SPNCRNA.472 ; db_xref "PMID:18488015" ; synonym "SPNG2192-93" ; systematic_id "SPNCRNA.472" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 717851 718869 . - . mRNA SPCC18B5.02c ; systematic_id "SPCC18B5.02c" ; pseudo "_no_value" ; colour "13" ; controlled_curation "term=gene expression, transcriptionally induced by stress; cv=gene_ex; date=19700101 ||| term=warning, frameshifted; cv=warning; date=20091230" ; gene "SPCC18B5.02c" ; product "cinnamoyl-CoA reductase pseudogene" ; note "Three independent preps were newly prepared from the original clone and all three were the same as previously reported sequence" ;
chromosome3 GeneDB CDS 717851 718869 . - . mRNA SPCC18B5.02c ; colour "13" ;
chromosome3 GeneDB 5'-UTR 722016 722233 . + . mRNA SPCC18B5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18B5.03" ; systematic_id "SPCC18B5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 722234 724867 . + . mRNA SPCC18B5.03 ; systematic_id "SPCC18B5.03" ; colour "2" ; db_xref "SPD:47/47A06" ; Alias "wee1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:872890; date=19700101 ||| term=orthologous to S. cerevisiae YJL187C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Cdc2; qualifier=phosphorylates|inhibits; db_xref=PMID:1372994; date=20090826 ||| term=localization dependent on Cdr2; db_xref=PMID:19474789; date=20090826 ||| term=phenotype, cell morpology, small cells; db_xref=PMID:1165770; qualifier=deletion; date=20101124" ; GO "GO:0071341; medial cortical node
GO:0005654; nucleoplasm
GO:0005634; nucleus
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0004715; non-membrane spanning protein tyrosine kinase activity
; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0000077; DNA damage checkpoint
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0031660; negative regulation of cyclin- dependent protein kinase activity during G2/M
GO:0018108; peptidyl-tyrosine phosphorylation
GO:0008361; regulation of cell size
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "wee1" ; product "M phase inhibitor protein kinase Wee1" ;
chromosome3 GeneDB CDS 722234 724867 . + . mRNA SPCC18B5.03 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 724868 725590 . + . mRNA SPCC18B5.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18B5.03" ; systematic_id "SPCC18B5.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 725979 726009 . + . mRNA SPCC18B5.04 ; ID "SPCC18B5.04" ; systematic_id "SPCC18B5.04" ; note "mRNA from AU013007" ;
chromosome3 GeneDB CDS_parts 726010 726510 . + . mRNA SPCC18B5.04 ; systematic_id "SPCC18B5.04" ; colour "7" ; gene "SPCC18B5.04 ||| rsm18" ; Alias "rsm18" ; db_xref "SPD:42/42B11" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rsm18" ; product "mitochondrial ribosomal protein subunit S18 (predicted)" ;
chromosome3 GeneDB CDS 726010 726510 . + . mRNA SPCC18B5.04 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 726511 726792 . + . mRNA SPCC18B5.04 ; ID "SPCC18B5.04" ; systematic_id "SPCC18B5.04" ; note "mRNA from AU011585" ;
chromosome3 GeneDB CDS_parts 727030 728013 . - . mRNA SPCC18B5.05c ; systematic_id "SPCC18B5.05c" ; colour "7" ; gene "SPCC18B5.05c" ; note "Other S. pombe and S. cerevisiae phosphomethylpyrimidine kinases have additional TENA/THI domain" ; db_xref "SPD:14/14C05" ; GO "GO:0009228; thiamin biosynthesis
GO:0008972; phosphomethylpyrimidine kinase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101" ; product "phosphomethylpyrimidine kinase (predicted)" ; EC_number "2.7.4.7" ;
chromosome3 GeneDB CDS 727030 728013 . - . mRNA SPCC18B5.05c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 729112 729132 . + . mRNA SPCC18B5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18B5.06" ; systematic_id "SPCC18B5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 729133 730522 . + . mRNA SPCC18B5.06 ; systematic_id "SPCC18B5.06" ; colour "7" ; gene "SPCC18B5.06" ; obsolete_name "erf1 ||| sup45" ; db_xref "SPD:44/44D11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL001W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0006412; translation
GO:0000294; nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay
GO:0070317; negative regulation of G1 to G0 transition" ; product "translation release factor eRF1 family protein (predicted)" ;
chromosome3 GeneDB CDS 729133 729212 . + . mRNA SPCC18B5.06 ; colour "7" ;
chromosome3 GeneDB CDS 729266 729319 . + . mRNA SPCC18B5.06 ; colour "7" ;
chromosome3 GeneDB CDS 729380 729678 . + . mRNA SPCC18B5.06 ; colour "7" ;
chromosome3 GeneDB CDS 729735 729841 . + . mRNA SPCC18B5.06 ; colour "7" ;
chromosome3 GeneDB CDS 729890 730522 . + . mRNA SPCC18B5.06 ; colour "7" ;
chromosome3 GeneDB misc_feature 729213 729218 . + . misc_feature unknown_623 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 729252 729265 . + . misc_feature unknown_624 ; colour "6" ; note "ctaacttagtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 729320 729325 . + . misc_feature unknown_625 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 729353 729379 . + . misc_feature unknown_626 ; colour "6" ; note "ataacacctgttttttctgttgtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 729679 729684 . + . misc_feature unknown_627 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 729724 729734 . + . misc_feature unknown_628 ; colour "6" ; note "ctgacttgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 729842 729847 . + . misc_feature unknown_629 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 729874 729889 . + . misc_feature unknown_630 ; colour "6" ; note "ctgatcaattttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 730523 730708 . + . mRNA SPCC18B5.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18B5.06" ; systematic_id "SPCC18B5.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 730982 731471 . - . mRNA SPCC18B5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18B5.07c" ; systematic_id "SPCC18B5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 731472 733221 . - . mRNA SPCC18B5.07c ; systematic_id "SPCC18B5.07c" ; colour "2" ; gene "nup61 ||| SPCC18B5.07c" ; Alias "nup61" ; db_xref "SPD:45/45G06" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0031965; nuclear membrane
GO:0007094; mitotic spindle checkpoint" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=FG repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YLR335W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nup61" ; product "nucleoporin Nup61" ;
chromosome3 GeneDB CDS 731472 733050 . - . mRNA SPCC18B5.07c ; colour "2" ;
chromosome3 GeneDB CDS 733103 733221 . - . mRNA SPCC18B5.07c ; colour "2" ;
chromosome3 GeneDB misc_feature 733051 733062 . - . misc_feature unknown_631 ; colour "6" ; note "ctaatgtattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 733097 733102 . - . misc_feature unknown_632 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 733220 733235 . - . mRNA SPCC18B5.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18B5.07c" ; systematic_id "SPCC18B5.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 733403 733420 . - . mRNA SPCC18B5.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18B5.08c" ; systematic_id "SPCC18B5.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 733421 736342 . - . mRNA SPCC18B5.08c ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:47/47E04" ; systematic_id "SPCC18B5.08c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004822; isoleucine-tRNA ligase activity
GO:0006428; isoleucyl-tRNA aminoacylation" ; gene "SPCC18B5.08c" ; product "mitochondrial isoleucine-tRNA ligase (predicted)" ; EC_number "6.1.1.5" ;
chromosome3 GeneDB CDS 733421 736342 . - . mRNA SPCC18B5.08c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 736341 736374 . - . mRNA SPCC18B5.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18B5.08c" ; systematic_id "SPCC18B5.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 737089 737519 . - . mRNA SPCC18B5.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18B5.09c" ; systematic_id "SPCC18B5.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 737520 737870 . - . mRNA SPCC18B5.09c ; db_xref "SPD:02/02C04" ; systematic_id "SPCC18B5.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPCC18B5.09c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 737520 737870 . - . mRNA SPCC18B5.09c ; colour "8" ;
chromosome3 GeneDB CDS_parts 738016 739255 . - . mRNA SPCC18B5.10c ; db_xref "SPD:19/19G10" ; systematic_id "SPCC18B5.10c" ; colour "7" ; GO "GO:0000346; transcription export complex
GO:0006406; mRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL253W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC18B5.10c" ; product "TREX complex subunit Tex1 (predicted)" ;
chromosome3 GeneDB CDS 738016 738159 . - . mRNA SPCC18B5.10c ; colour "7" ;
chromosome3 GeneDB CDS 738226 738304 . - . mRNA SPCC18B5.10c ; colour "7" ;
chromosome3 GeneDB CDS 738350 738594 . - . mRNA SPCC18B5.10c ; colour "7" ;
chromosome3 GeneDB CDS 738637 738705 . - . mRNA SPCC18B5.10c ; colour "7" ;
chromosome3 GeneDB CDS 738758 738849 . - . mRNA SPCC18B5.10c ; colour "7" ;
chromosome3 GeneDB CDS 738893 739166 . - . mRNA SPCC18B5.10c ; colour "7" ;
chromosome3 GeneDB CDS 739229 739255 . - . mRNA SPCC18B5.10c ; colour "7" ;
chromosome3 GeneDB misc_feature 738344 738349 . - . misc_feature unknown_633 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 738595 738608 . - . misc_feature unknown_634 ; colour "6" ; note "cttacgattaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 738631 738636 . - . misc_feature unknown_635 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 738706 738720 . - . misc_feature unknown_636 ; colour "6" ; note "ctaattgaatgctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 738752 738757 . - . misc_feature unknown_637 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 738850 738865 . - . misc_feature unknown_638 ; colour "6" ; note "ttaactatttattcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 738887 738892 . - . misc_feature unknown_639 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 739167 739191 . - . misc_feature unknown_640 ; colour "6" ; note "ctaaaactttcttttttctttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 739223 739228 . - . misc_feature unknown_641 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 739356 739401 . - . mRNA SPCC18B5.11c ; Alias "cds1" ; ID "SPCC18B5.11c" ; db_xref "EMBL:X85040" ; systematic_id "SPCC18B5.11c" ; primary_name "cds1" ;
chromosome3 GeneDB CDS_parts 739402 741230 . - . mRNA SPCC18B5.11c ; systematic_id "SPCC18B5.11c" ; colour "2" ; gene "cds1 ||| SPCC18B5.11c" ; db_xref "SPD:36/36F11" ; Alias "cds1" ; GO "GO:0005524; ATP binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0031573; intra-S DNA damage checkpoint
GO:0031573; intra-S DNA damage checkpoint
GO:0006468; protein amino acid phosphorylation
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, DNA damage checkpoint defects, S-phase; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=orthologous to S. cerevisiae YPL153C; date=19700101 ||| term=gene expression, alternative transcripts; cv=gene_ex; db_xref=EMBL:AJ783838; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:14668484; date=20090110 ||| term=name description, Checking DNA Synthesis; cv=name_description; date=20090605 ||| term=human CHEK2 ortholog; date=20100217 ||| term=disease associated, cancer; date=20100217 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:11313465; date=19700101 ||| term=target of Rad3; qualifier=phosphorylated_by|activates; residue=Thr11; db_xref=PMID:11313465; date=19700101" ; primary_name "cds1" ; product "replication checkpoint kinase Cds1" ;
chromosome3 GeneDB CDS 739402 739681 . - . mRNA SPCC18B5.11c ; colour "2" ;
chromosome3 GeneDB CDS 739754 739962 . - . mRNA SPCC18B5.11c ; colour "2" ;
chromosome3 GeneDB CDS 740001 740210 . - . mRNA SPCC18B5.11c ; colour "2" ;
chromosome3 GeneDB CDS 740276 740535 . - . mRNA SPCC18B5.11c ; colour "2" ;
chromosome3 GeneDB CDS 740604 740688 . - . mRNA SPCC18B5.11c ; colour "2" ;
chromosome3 GeneDB CDS 740734 740765 . - . mRNA SPCC18B5.11c ; colour "2" ;
chromosome3 GeneDB CDS 740833 740881 . - . mRNA SPCC18B5.11c ; colour "2" ;
chromosome3 GeneDB CDS 740973 741230 . - . mRNA SPCC18B5.11c ; colour "2" ;
chromosome3 GeneDB misc_feature 739682 739692 . - . misc_feature unknown_642 ; colour "6" ; note "ctaattcacag, splice branch and acceptor" ;
chromosome3 GeneDB intron 739682 739753 . - . intron SPCC18B5.11c ; Alias "cds1" ; db_xref "EMBL:X85040" ; systematic_id "SPCC18B5.11c" ; primary_name "cds1" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 739748 739753 . - . misc_feature unknown_643 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 739963 739973 . - . misc_feature unknown_644 ; colour "6" ; note "ctaacttgtag, splice branch and acceptor" ;
chromosome3 GeneDB intron 739963 740000 . - . intron SPCC18B5.11c ; Alias "cds1" ; db_xref "EMBL:X85040" ; systematic_id "SPCC18B5.11c" ; primary_name "cds1" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 739995 740000 . - . misc_feature unknown_645 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 740211 740228 . - . misc_feature unknown_646 ; colour "6" ; note "ctaacacttatcttttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 740211 740275 . - . intron SPCC18B5.11c ; Alias "cds1" ; db_xref "EMBL:X85040" ; systematic_id "SPCC18B5.11c" ; primary_name "cds1" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 740270 740275 . - . misc_feature unknown_647 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 740536 740550 . - . misc_feature unknown_648 ; colour "6" ; note "cttacagtcttatag, splice branch and acceptor" ;
chromosome3 GeneDB intron 740536 740603 . - . intron SPCC18B5.11c ; Alias "cds1" ; db_xref "EMBL:X85040" ; systematic_id "SPCC18B5.11c" ; primary_name "cds1" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 740598 740603 . - . misc_feature unknown_649 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 740689 740702 . - . misc_feature unknown_650 ; colour "6" ; note "ctgacgtcatttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 740689 740733 . - . intron SPCC18B5.11c ; Alias "cds1" ; db_xref "EMBL:X85040" ; systematic_id "SPCC18B5.11c" ; primary_name "cds1" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 740728 740733 . - . misc_feature unknown_651 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 740766 740778 . - . misc_feature unknown_652 ; colour "6" ; note "ctaacaatttcag, splice branch and acceptor" ;
chromosome3 GeneDB intron 740766 740832 . - . intron SPCC18B5.11c ; Alias "cds1" ; systematic_id "SPCC18B5.11c" ; primary_name "cds1" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 740827 740832 . - . misc_feature unknown_653 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 740882 740898 . - . misc_feature unknown_654 ; colour "6" ; note "ctaacgaaatgacccag, splice branch and acceptor" ;
chromosome3 GeneDB intron 740882 740972 . - . intron SPCC18B5.11c ; Alias "cds1" ; systematic_id "SPCC18B5.11c" ; primary_name "cds1" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 740967 740972 . - . misc_feature unknown_655 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 741231 741314 . - . mRNA SPCC18B5.11c ; Alias "cds1" ; ID "SPCC18B5.11c" ; db_xref "EMBL:X85040" ; systematic_id "SPCC18B5.11c" ; primary_name "cds1" ;
chromosome3 GeneDB 5'-UTR 741542 741744 . + . mRNA SPCC14G10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC14G10.01" ; systematic_id "SPCC14G10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 741681 744137 . + . misc_feature unknown_656 ; note "nominal overlap with cosmid SPCC14G10 and SPCC14G10" ;
chromosome3 GeneDB CDS_parts 741745 742503 . + . mRNA SPCC14G10.01 ; systematic_id "SPCC14G10.01" ; colour "7" ; gene "SPCC18B5.12 ||| SPCC14G10.01" ; note "SPBC18B5.12 was a typo" ; Alias "SPCC18B5.12" ; obsolete_name "SPBC18B5.12" ; db_xref "SPD:09/09D01" ; synonym "SPCC18B5.12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR196C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004140; dephospho-CoA kinase activity
GO:0015937; coenzyme A biosynthesis
GO:0005524; ATP binding
GO:0031965; nuclear membrane
GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane" ; primary_name "SPCC18B5.12" ; product "dephospho-CoA kinase (predicted)" ; EC_number "2.7.1.24" ;
chromosome3 GeneDB CDS 741745 741781 . + . mRNA SPCC14G10.01 ; colour "7" ;
chromosome3 GeneDB CDS 741830 742503 . + . mRNA SPCC14G10.01 ; colour "7" ;
chromosome3 GeneDB misc_feature 741782 741787 . + . misc_feature unknown_657 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 741816 741829 . + . misc_feature unknown_658 ; colour "6" ; note "ttaacctagttaag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 742504 742530 . + . mRNA SPCC14G10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC14G10.01" ; systematic_id "SPCC14G10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 742971 743003 . + . mRNA SPCC14G10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC14G10.02" ; systematic_id "SPCC14G10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 743004 747752 . + . mRNA SPCC14G10.02 ; systematic_id "SPCC14G10.02" ; colour "7" ; gene "SPCC18B5.13 ||| SPCC14G10.02" ; Alias "SPCC18B5.13" ; db_xref "SPD:31/31A03" ; synonym "SPCC18B5.13" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL014C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPCC18B5.13" ; product "ribosome biogenesis protein Urb1 (predicted)" ;
chromosome3 GeneDB CDS 743004 743034 . + . mRNA SPCC14G10.02 ; colour "7" ;
chromosome3 GeneDB CDS 743077 747752 . + . mRNA SPCC14G10.02 ; colour "7" ;
chromosome3 GeneDB misc_feature 743035 743040 . + . misc_feature unknown_659 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 743063 743076 . + . misc_feature unknown_660 ; colour "6" ; note "ctaactccatgtag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 747753 747813 . + . mRNA SPCC14G10.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC14G10.02" ; systematic_id "SPCC14G10.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 747865 748036 . - . mRNA SPCC14G10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC14G10.03c" ; systematic_id "SPCC14G10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 748037 748530 . - . mRNA SPCC14G10.03c ; systematic_id "SPCC14G10.03c" ; colour "7" ; gene "SPCC14G10.03c ||| ump1" ; Alias "ump1" ; db_xref "SPD:04/04G05" ; GO "GO:0043248; proteasome assembly
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR173C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ump1" ; product "proteasome maturation factor Ump1 (predicted)" ;
chromosome3 GeneDB CDS 748037 748192 . - . mRNA SPCC14G10.03c ; colour "7" ;
chromosome3 GeneDB CDS 748297 748530 . - . mRNA SPCC14G10.03c ; colour "7" ;
chromosome3 GeneDB misc_feature 748193 748207 . - . misc_feature unknown_661 ; colour "6" ; note "ctgactcaagcatag, splice branch and acceptor" ;
chromosome3 GeneDB intron 748193 748296 . - . intron SPCC14G10.03c ; systematic_id "SPCC14G10.03c" ; note "confirmed Intron: intron confirmed by EST" ;
chromosome3 GeneDB misc_feature 748291 748296 . - . misc_feature unknown_662 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 748529 748582 . - . mRNA SPCC14G10.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC14G10.03c" ; systematic_id "SPCC14G10.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 748747 748811 . + . mRNA SPCC14G10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC14G10.04" ; systematic_id "SPCC14G10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 748812 750764 . + . mRNA SPCC14G10.04 ; db_xref "SPD:27/27A03" ; systematic_id "SPCC14G10.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=20080318 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC14G10.04" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 748812 748906 . + . mRNA SPCC14G10.04 ; colour "8" ;
chromosome3 GeneDB CDS 748990 749049 . + . mRNA SPCC14G10.04 ; colour "8" ;
chromosome3 GeneDB CDS 749160 749212 . + . mRNA SPCC14G10.04 ; colour "8" ;
chromosome3 GeneDB CDS 749479 750764 . + . mRNA SPCC14G10.04 ; colour "8" ;
chromosome3 GeneDB misc_feature 748907 748912 . + . misc_feature unknown_663 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 748976 748989 . + . misc_feature unknown_664 ; colour "6" ; note "ctaacgttttacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 749050 749055 . + . misc_feature unknown_665 ; colour "6" ; note "gtaggg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 749141 749159 . + . misc_feature unknown_666 ; colour "6" ; note "ctaacaaatttttgtatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 749213 749218 . + . misc_feature unknown_667 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 749466 749478 . + . misc_feature unknown_668 ; colour "6" ; note "ctaacgtttgtag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 750765 751551 . + . mRNA SPCC14G10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC14G10.04" ; systematic_id "SPCC14G10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 751519 751603 . + . misc_feature unknown_669 ; note "407 (+1) 1 85 dbj|AU007705|AU007705 Schizosaccharomy ces pombe cDNA, clone spc02407" ;
chromosome3 GeneDB misc_feature 752439 755680 . - . misc_feature unknown_670 ; note "nominal overlap with cosmid SPCC1020, EM:AL023518 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 752439 755680 . + . misc_feature unknown_671 ; note "nominal overlap with cosmid SPCC14G10, EM:AL031518 S. pombe chromosome 3" ;
chromosome3 GeneDB CDS_parts 752474 754631 . + . mRNA SPCC1020.13c ; systematic_id "SPCC1020.13c" ; colour "7" ; gene "SPCC14G10.05 ||| SPCC1020.13c" ; Alias "SPCC14G10.05" ; db_xref "SPD:37/37F09" ; synonym "SPCC14G10.05" ; GO "GO:0004620; phospholipase activity
GO:0044242; cellular lipid catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "SPCC14G10.05" ; product "DDHD family phospholipase (predicted)" ;
chromosome3 GeneDB CDS 752474 752680 . + . mRNA SPCC1020.13c ; colour "7" ;
chromosome3 GeneDB CDS 752725 753289 . + . mRNA SPCC1020.13c ; colour "7" ;
chromosome3 GeneDB CDS 753353 754093 . + . mRNA SPCC1020.13c ; colour "7" ;
chromosome3 GeneDB CDS 754135 754631 . + . mRNA SPCC1020.13c ; colour "7" ;
chromosome3 GeneDB misc_feature 752681 752686 . + . misc_feature unknown_672 ; colour "6" ; note "gtaact, splice donor sequence" ;
chromosome3 GeneDB misc_feature 752714 752724 . + . misc_feature unknown_673 ; colour "6" ; note "ctaacgagcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 753290 753295 . + . misc_feature unknown_674 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 753335 753352 . + . misc_feature unknown_675 ; colour "6" ; note "ctaatgttgacaatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 754094 754099 . + . misc_feature unknown_676 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 754123 754134 . + . misc_feature unknown_677 ; colour "6" ; note "ctaacaaattag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 754632 754798 . + . mRNA SPCC1020.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.13c" ; systematic_id "SPCC1020.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 755257 756186 . + . mRNA SPCC1020.12c ; systematic_id "SPCC1020.12c" ; colour "10" ; db_xref "SPD:13/13A07" ; Alias "xap5" ; synonym "SPCC14G10.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, candidate disease gene for Armfield syndrome ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005634; nucleus" ; primary_name "xap5" ; product "xap-5-like protein" ; reserved_name "xap5" ;
chromosome3 GeneDB CDS 755257 755405 . + . mRNA SPCC1020.12c ; colour "10" ;
chromosome3 GeneDB CDS 755469 756186 . + . mRNA SPCC1020.12c ; colour "10" ;
chromosome3 GeneDB misc_feature 755406 755411 . + . misc_feature unknown_678 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 755451 755468 . + . misc_feature unknown_679 ; colour "6" ; note "ctgacaattcaattttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 756187 756225 . + . mRNA SPCC1020.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.12c" ; systematic_id "SPCC1020.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 756719 757024 . + . misc_RNA SPNCRNA.473 ; db_xref "PMID:18488015" ; synonym "SPNG2201" ; systematic_id "SPNCRNA.473" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 757344 757364 . + . mRNA SPCC1020.11c ; ID "SPCC1020.11c" ; db_xref "PMID:18488015" ; systematic_id "SPCC1020.11c" ; synonym "UTR predicted from transcriptome data SPNG2202" ;
chromosome3 GeneDB CDS_parts 757365 757861 . + . mRNA SPCC1020.11c ; db_xref "SPD:01/01E12" ; systematic_id "SPCC1020.11c" ; GO "GO:0005783; ER membrane protein complex
GO:0034975; protein folding in the endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL014W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPCC1020.11c" ; product "ER membrane protein complex subunit 6 (predicted)" ;
chromosome3 GeneDB CDS 757365 757424 . + . mRNA SPCC1020.11c ; colour "7" ;
chromosome3 GeneDB CDS 757506 757761 . + . mRNA SPCC1020.11c ; colour "7" ;
chromosome3 GeneDB CDS 757851 757861 . + . mRNA SPCC1020.11c ; colour "7" ;
chromosome3 GeneDB intron 757425 757505 . + . intron SPCC1020.11c ; systematic_id "SPCC1020.11c" ; note "predicted from transcriptome data" ;
chromosome3 GeneDB 3'-UTR 758590 758900 . - . mRNA SPCC1020.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.10" ; systematic_id "SPCC1020.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 758901 760853 . - . mRNA SPCC1020.10 ; systematic_id "SPCC1020.10" ; colour "2" ; db_xref "SPD:27/27A04" ; Alias "oca2" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0006808; regulation of nitrogen utilization
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034763; negative regulation of transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=phenotype, cell cycle defects; qualifier=overexpression; db_xref=PMID:12237855; cv=phenotype; date=20080728 ||| term=phenotype, growth defect, slow growth in minimal media; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=phenotype, resistance to rapamycin; qualifier=in_minimal_media; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=orthologous to S. cerevisiae YNL183C and YOR267C and YDL025C and YDL214C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, transcriptionally represses per1; db_xref=PMID:20404084; date=20100504 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:20404084; date=20100504" ; primary_name "oca2" ; product "serine/threonine protein kinase Oca2" ;
chromosome3 GeneDB CDS 758901 760853 . - . mRNA SPCC1020.10 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 760852 762606 . - . mRNA SPCC1020.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.10" ; systematic_id "SPCC1020.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 760853 766173 . - . misc_feature unknown_680 ; note "low-complexity gene free region" ;
chromosome3 GeneDB CDS_parts 766170 767369 . - . mRNA SPCC1020.09 ; systematic_id "SPCC1020.09" ; colour "2" ; gene "SPCC1020.09 ||| gnr1" ; Alias "gnr1" ; db_xref "SPD:44/44A05" ; GO "GO:0005834; heterotrimeric G-protein complex
GO:0005515; protein binding
GO:0004871; signal transducer activity
GO:0007186; G-protein coupled receptor protein signaling pathway
GO:0090029; negative regulation of pheromone- dependent signal transduction during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, G protein Negative Regulator; date=20090715 ||| term=human WDR79 ortholog; db_xref=PMID:16884933; date=20090715" ; primary_name "gnr1" ; product "heterotrimeric G protein beta subunit Gnr1" ;
chromosome3 GeneDB CDS 766170 767369 . - . mRNA SPCC1020.09 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 767887 767985 . - . mRNA SPCC1020.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.08" ; systematic_id "SPCC1020.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 767986 770052 . - . mRNA SPCC1020.08 ; db_xref "SPD:27/27F11" ; systematic_id "SPCC1020.08" ; colour "7" ; GO "GO:0031591; wybutosine biosynthesis
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL207W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1020.08" ; product "wybutosine biosynthesis protein Tyw1 (predicted)" ;
chromosome3 GeneDB CDS 767986 770052 . - . mRNA SPCC1020.08 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 770051 770085 . - . mRNA SPCC1020.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.08" ; systematic_id "SPCC1020.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 770722 771725 . - . mRNA SPCC1020.07 ; db_xref "SPD:14/14G07" ; systematic_id "SPCC1020.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL033W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC1020.07" ; product "haloacid dehalogenase-like hydrolase" ;
chromosome3 GeneDB CDS 770722 771293 . - . mRNA SPCC1020.07 ; colour "10" ;
chromosome3 GeneDB CDS 771351 771413 . - . mRNA SPCC1020.07 ; colour "10" ;
chromosome3 GeneDB CDS 771479 771521 . - . mRNA SPCC1020.07 ; colour "10" ;
chromosome3 GeneDB CDS 771693 771725 . - . mRNA SPCC1020.07 ; colour "10" ;
chromosome3 GeneDB misc_feature 771294 771312 . - . misc_feature unknown_681 ; colour "6" ; note "ctaatcattcatgctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 771345 771350 . - . misc_feature unknown_682 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 771414 771429 . - . misc_feature unknown_683 ; colour "6" ; note "ctaacggtgcgtctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 771473 771478 . - . misc_feature unknown_684 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 771522 771534 . - . misc_feature unknown_685 ; colour "6" ; note "ctaacgaatacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 771687 771692 . - . misc_feature unknown_686 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 771724 771957 . - . mRNA SPCC1020.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.07" ; systematic_id "SPCC1020.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 773389 773497 . + . mRNA SPCC1020.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.06c" ; systematic_id "SPCC1020.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 773498 774466 . + . mRNA SPCC1020.06c ; systematic_id "SPCC1020.06c" ; colour "7" ; gene "tal1 ||| SPCC1020.06c" ; Alias "tal1" ; db_xref "KEGG:MAP00030; ||| SPD:13/13G10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR354C and YGR043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0009052; pentose-phosphate shunt, non-oxidative branch
GO:0004801; transaldolase activity
GO:0005737; cytoplasm" ; primary_name "tal1" ; product "transaldolase (predicted)" ; EC_number "2.2.1.2" ;
chromosome3 GeneDB CDS 773498 774466 . + . mRNA SPCC1020.06c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 774467 774764 . + . mRNA SPCC1020.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.06c" ; systematic_id "SPCC1020.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 774760 775040 . - . mRNA SPCC1020.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.05" ; systematic_id "SPCC1020.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 775041 776570 . - . mRNA SPCC1020.05 ; db_xref "SPD:24/24H03" ; systematic_id "SPCC1020.05" ; colour "7" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0030968; unfolded protein response
GO:0006470; protein amino acid dephosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR361C and YOR137C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPCC1020.05" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome3 GeneDB CDS 775041 776570 . - . mRNA SPCC1020.05 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 776569 776740 . - . mRNA SPCC1020.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.05" ; systematic_id "SPCC1020.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 777729 782654 . - . misc_feature unknown_687 ; db_xref "SO:0000186" ; note "LTR-retrotransposon" ;
chromosome3 GeneDB LTR 777734 778082 . - . LTR unknown_688 ; colour "4" ; note "Tf2 type" ;
chromosome3 GeneDB CDS_parts 778133 782134 . - . mRNA SPCC1020.14 ; Alias "Tf2-12" ; systematic_id "SPCC1020.14" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "Tf2-12 ||| SPCC1020.14" ; primary_name "Tf2-12" ; product "retrotransposable element" ;
chromosome3 GeneDB CDS 778133 782134 . - . mRNA SPCC1020.14 ; colour "4" ;
chromosome3 GeneDB LTR 782301 782649 . - . LTR unknown_689 ; colour "4" ; note "Tf2 type" ;
chromosome3 GeneDB 5'-UTR 783066 783100 . + . mRNA SPCC1020.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.04c" ; systematic_id "SPCC1020.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 783101 783747 . + . mRNA SPCC1020.04c ; systematic_id "SPCC1020.04c" ; colour "2" ; gene "rpb6 ||| rpo15 ||| SPCC1020.04c" ; Alias "rpb6" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:07/07D07" ; synonym "rpo15" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006354; RNA elongation
GO:0006360; transcription from RNA polymerase I promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0006383; transcription from RNA polymerase III promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YPR187W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpb6" ; product "DNA-directed RNA polymerase I, II and III subunit Rpb6" ;
chromosome3 GeneDB CDS 783101 783375 . + . mRNA SPCC1020.04c ; colour "2" ;
chromosome3 GeneDB CDS 783594 783747 . + . mRNA SPCC1020.04c ; colour "2" ;
chromosome3 GeneDB misc_feature 783376 783381 . + . misc_feature unknown_690 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB intron 783376 783593 . + . intron SPCC1020.04c ; systematic_id "SPCC1020.04c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 783577 783593 . + . misc_feature unknown_691 ; colour "6" ; note "ctaactctttattttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 783748 784000 . + . mRNA SPCC1020.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.04c" ; systematic_id "SPCC1020.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 784250 785705 . - . mRNA SPCC1020.03 ; db_xref "SPD:23/23E03" ; systematic_id "SPCC1020.03" ; colour "7" ; GO "GO:0005381; iron ion transporter activity
GO:0048250; mitochondrial iron ion transport
GO:0005739; mitochondrion
GO:0006880; intracellular sequestering of iron ion
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR177W and YPL224C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; gene "SPCC1020.03" ; product "mitochondrial iron ion transporter (predicted)" ;
chromosome3 GeneDB CDS 784250 784788 . - . mRNA SPCC1020.03 ; colour "7" ;
chromosome3 GeneDB CDS 784832 785244 . - . mRNA SPCC1020.03 ; colour "7" ;
chromosome3 GeneDB CDS 785464 785705 . - . mRNA SPCC1020.03 ; colour "7" ;
chromosome3 GeneDB misc_feature 784789 784804 . - . misc_feature unknown_692 ; colour "6" ; note "ctaatagtatatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 784826 784831 . - . misc_feature unknown_693 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 785245 785260 . - . misc_feature unknown_694 ; colour "6" ; note "ttaacactttttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 785458 785463 . - . misc_feature unknown_695 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 786422 786519 . - . mRNA SPCC1020.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1020.02" ; systematic_id "SPCC1020.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 786520 790614 . - . mRNA SPCC1020.02 ; systematic_id "SPCC1020.02" ; colour "2" ; gene "spc7 ||| SPCC1020.02" ; db_xref "SPD:30/30F05" ; Alias "spc7" ; GO "GO:0000941; inner kinetochore of condensed nuclear chromosome
GO:0005515; protein binding
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0051010; microtubule plus-end binding
GO:0000070; mitotic sister chromatid segregation
GO:0031617; NMS complex
GO:0034613; cellular protein localization
GO:0000779; condensed chromosome, pericentric region
GO:0019236; response to pheromone" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15371542; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=region; date=19700101 ||| term=orthologous to S. cerevisiae YGL093W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, S. Pombe Centromere; date=20100909" ; primary_name "spc7" ; product "kinetochore protein Spc7" ;
chromosome3 GeneDB CDS 786520 790614 . - . mRNA SPCC1020.02 ; colour "2" ;
chromosome3 GeneDB CDS_parts 793179 796211 . + . mRNA SPCC1020.01c ; systematic_id "SPCC1020.01c" ; colour "2" ; gene "pma2 ||| SPCC1020.01c ||| SPCC1393.01" ; Alias "pma2" ; db_xref "SPD:29/29H03" ; synonym "SPCC1393.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL036W; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005886; plasma membrane
GO:0006885; regulation of pH
GO:0015992; proton transport
GO:0008553; hydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0005524; ATP binding" ; primary_name "pma2" ; product "P-type proton ATPase, P3-type Pma2" ;
chromosome3 GeneDB CDS 793179 796211 . + . mRNA SPCC1020.01c ; colour "2" ;
chromosome3 GeneDB misc_feature 794572 794898 . + . misc_feature unknown_696 ; note "nominal overlap with cosmid SPCC1393, EM:AL035592 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 794572 794898 . - . misc_feature unknown_697 ; note "nominal overlap with cosmid SPCC1020, EM:AL023518 S. pombe chromosome 3" ;
chromosome3 GeneDB CDS_parts 796749 797969 . - . mRNA SPCC1393.02c ; systematic_id "SPCC1393.02c" ; colour "7" ; gene "SPCC1393.02c ||| spt2" ; Alias "spt2" ; db_xref "SPD:19/19D10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER161C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0030528; transcription regulator activity
GO:0005720; nuclear heterochromatin
GO:0006338; chromatin remodeling" ; primary_name "spt2" ; product "non-specific DNA binding protein Spt2 (predicted)" ; reserved_name "spt2" ;
chromosome3 GeneDB CDS 796749 797969 . - . mRNA SPCC1393.02c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 798248 798281 . + . mRNA SPCC1393.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.03" ; systematic_id "SPCC1393.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 798282 798743 . + . mRNA SPCC1393.03 ; systematic_id "SPCC1393.03" ; colour "7" ; gene "rps1501 ||| rps15-1 ||| SPCC1393.03" ; Alias "rps1501" ; db_xref "SPD:04/04B10" ; synonym "rps15-1" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000056; ribosomal small subunit export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rps1501" ; product "40S ribosomal protein S15 (predicted)" ;
chromosome3 GeneDB CDS 798282 798743 . + . mRNA SPCC1393.03 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 798744 798850 . + . mRNA SPCC1393.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.03" ; systematic_id "SPCC1393.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 799456 799842 . + . mRNA SPCC1393.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.04" ; systematic_id "SPCC1393.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 799843 800618 . + . mRNA SPCC1393.04 ; systematic_id "SPCC1393.04" ; colour "2" ; gene "SPCC1393.04" ; Alias "fta4" ; db_xref "SPD:09/09F06" ; synonym "sma4" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000776; kinetochore" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106 ||| term=species distribution, conserved in Fungi; date=20100723 ||| term=species distribution, conserved in Eukaryotes; date=20100723 ||| term=species distribution, conserved in Fungi only; date=20100723 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100723" ; primary_name "fta4" ; product "Sim4 and Mal2 associated (4 and 2 associated) protein 4" ;
chromosome3 GeneDB CDS 799843 799984 . + . mRNA SPCC1393.04 ; colour "2" ;
chromosome3 GeneDB CDS 800059 800618 . + . mRNA SPCC1393.04 ; colour "2" ;
chromosome3 GeneDB misc_feature 799985 799990 . + . misc_feature unknown_698 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 800046 800058 . + . misc_feature unknown_699 ; colour "6" ; note "ttaaccaaaacag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 800619 800885 . + . mRNA SPCC1393.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.04" ; systematic_id "SPCC1393.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 801197 804501 . + . mRNA SPCC1393.05 ; systematic_id "SPCC1393.05" ; colour "2" ; gene "SPCC1393.05 ||| ers1" ; Alias "ers1" ; db_xref "SPD:30/30C12" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Essential for RNA Silencing; cv=name_description; db_xref=PMID:18658154; date=20080729 ||| term=cystinosin family; date=20080905 ||| term=PQ loop; qualifier=inferred from context; date=20080905 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0034630; RITS complex localization
GO:0030422; RNA interference, production of siRNA
GO:0030702; chromatin silencing at centromere
GO:0051570; regulation of histone H3-K9 methylation
GO:0030148; chromatin silencing by small RNA" ; primary_name "ers1" ; product "RNA-silencing factor Ers1" ; reserved_name "rsh1" ;
chromosome3 GeneDB CDS 801197 801227 . + . mRNA SPCC1393.05 ; colour "2" ;
chromosome3 GeneDB CDS 801264 801339 . + . mRNA SPCC1393.05 ; colour "2" ;
chromosome3 GeneDB CDS 801379 801427 . + . mRNA SPCC1393.05 ; colour "2" ;
chromosome3 GeneDB CDS 801467 801516 . + . mRNA SPCC1393.05 ; colour "2" ;
chromosome3 GeneDB CDS 801572 801986 . + . mRNA SPCC1393.05 ; colour "2" ;
chromosome3 GeneDB CDS 802032 803311 . + . mRNA SPCC1393.05 ; colour "2" ;
chromosome3 GeneDB CDS 803362 803409 . + . mRNA SPCC1393.05 ; colour "2" ;
chromosome3 GeneDB CDS 803447 803557 . + . mRNA SPCC1393.05 ; colour "2" ;
chromosome3 GeneDB CDS 803600 803881 . + . mRNA SPCC1393.05 ; colour "2" ;
chromosome3 GeneDB CDS 803932 804018 . + . mRNA SPCC1393.05 ; colour "2" ;
chromosome3 GeneDB CDS 804060 804501 . + . mRNA SPCC1393.05 ; colour "2" ;
chromosome3 GeneDB misc_feature 801228 801233 . + . misc_feature unknown_700 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 801254 801263 . + . misc_feature unknown_701 ; colour "6" ; note "ctaatattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 801340 801345 . + . misc_feature unknown_702 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 801367 801378 . + . misc_feature unknown_703 ; colour "6" ; note "ctgatgatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 801428 801433 . + . misc_feature unknown_704 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 801455 801466 . + . misc_feature unknown_705 ; colour "6" ; note "ctaataattcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 801517 801522 . + . misc_feature unknown_706 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 801560 801571 . + . misc_feature unknown_707 ; colour "6" ; note "ttaacatgctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 801987 801992 . + . misc_feature unknown_708 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 802017 802031 . + . misc_feature unknown_709 ; colour "6" ; note "ctaacttttgactag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 803312 803317 . + . misc_feature unknown_710 ; colour "6" ; note "gtctgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 803346 803361 . + . misc_feature unknown_711 ; colour "6" ; note "ctaacactttgtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 803410 803415 . + . misc_feature unknown_712 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 803435 803446 . + . misc_feature unknown_713 ; colour "6" ; note "ttaatccaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 803558 803563 . + . misc_feature unknown_714 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 803583 803599 . + . misc_feature unknown_715 ; colour "6" ; note "ttaacctttttataaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 803882 803887 . + . misc_feature unknown_716 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 803915 803931 . + . misc_feature unknown_717 ; colour "6" ; note "ctaatcatgacttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 804019 804024 . + . misc_feature unknown_718 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 804044 804059 . + . misc_feature unknown_719 ; colour "6" ; note "ctaatcagttgactag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 804518 804626 . - . mRNA SPCC1393.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.06c" ; systematic_id "SPCC1393.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 804627 806009 . - . mRNA SPCC1393.06c ; db_xref "SPD:21/21D08" ; systematic_id "SPCC1393.06c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1393.06c" ; product "rRNA processing protein Ipi1 (predicted)" ;
chromosome3 GeneDB CDS 804627 805627 . - . mRNA SPCC1393.06c ; colour "7" ;
chromosome3 GeneDB CDS 805678 805800 . - . mRNA SPCC1393.06c ; colour "7" ;
chromosome3 GeneDB CDS 805849 805921 . - . mRNA SPCC1393.06c ; colour "7" ;
chromosome3 GeneDB CDS 805965 806009 . - . mRNA SPCC1393.06c ; colour "7" ;
chromosome3 GeneDB misc_feature 805628 805641 . - . misc_feature unknown_720 ; colour "6" ; note "ctaacatgttaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 805672 805677 . - . misc_feature unknown_721 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 805801 805817 . - . misc_feature unknown_722 ; colour "6" ; note "ctaacctaaacatctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 805901 805906 . - . misc_feature unknown_723 ; colour "6" ; note "gtggga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 806008 806059 . - . mRNA SPCC1393.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.06c" ; systematic_id "SPCC1393.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 806262 808855 . - . mRNA SPCC1393.07c ; systematic_id "SPCC1393.07c" ; colour "8" ; gene "SPCC1393.07c ||| mug4" ; note "possibly a glycoprotein" ; Alias "mug4" ; db_xref "SPD:38/38E08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug4" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 806262 807577 . - . mRNA SPCC1393.07c ; colour "8" ;
chromosome3 GeneDB CDS 807634 808855 . - . mRNA SPCC1393.07c ; colour "8" ;
chromosome3 GeneDB misc_feature 807578 807596 . - . misc_feature unknown_724 ; colour "6" ; note "ctaacacttttcccgatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 807628 807633 . - . misc_feature unknown_725 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 808856 812654 . - . misc_feature unknown_726 ; note "low complexity gene-free region" ;
chromosome3 GeneDB 5'-UTR 811668 812654 . + . mRNA SPCC1393.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.08" ; systematic_id "SPCC1393.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 812655 814328 . + . mRNA SPCC1393.08 ; db_xref "SPD:35/35A09" ; systematic_id "SPCC1393.08" ; colour "7" ; GO "GO:0043565; sequence-specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-GATA type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC1393.08" ; product "transcription factor, zf-GATA type (predicted)" ;
chromosome3 GeneDB CDS 812655 814328 . + . mRNA SPCC1393.08 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 814329 814526 . + . mRNA SPCC1393.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.08" ; systematic_id "SPCC1393.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 814799 814896 . - . misc_feature unknown_727 ; note "small fragment of 25S rRNA EMBL:Z19136 previously annotated as SPRRNA.25" ;
chromosome3 GeneDB CDS_parts 815442 816457 . - . mRNA SPCC1393.09c ; db_xref "SPD:15/15B01" ; systematic_id "SPCC1393.09c" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RWDD1 ortholog; date=20100728" ; gene "SPCC1393.09c" ; product "RWD domain protein, implicated in translation" ;
chromosome3 GeneDB CDS 815442 815819 . - . mRNA SPCC1393.09c ; colour "10" ;
chromosome3 GeneDB CDS 815970 816106 . - . mRNA SPCC1393.09c ; colour "10" ;
chromosome3 GeneDB CDS 816179 816247 . - . mRNA SPCC1393.09c ; colour "10" ;
chromosome3 GeneDB CDS 816394 816457 . - . mRNA SPCC1393.09c ; colour "10" ;
chromosome3 GeneDB misc_feature 815820 815837 . - . misc_feature unknown_728 ; colour "6" ; note "ctaatcattcatatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 815964 815969 . - . misc_feature unknown_729 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 816107 816127 . - . misc_feature unknown_730 ; colour "6" ; note "ctaacttatacgatcaattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 816173 816178 . - . misc_feature unknown_731 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 816248 816261 . - . misc_feature unknown_732 ; colour "6" ; note "ttaacattagttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 816388 816393 . - . misc_feature unknown_733 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB tRNA 817425 817498 . + . tRNA SPCTRNAILE.09 ; systematic_id "SPCTRNAILE.09" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033441; AAT codon-amino acid adaptor activity" ; gene "SPCTRNAILE.09" ; product "tRNA Isoleucine" ; note "tRNA Ile anticodon AAT, Cove score 63.37" ;
chromosome3 GeneDB 5'-UTR 817990 818458 . + . mRNA SPCC1393.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.10" ; systematic_id "SPCC1393.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 818459 819328 . + . mRNA SPCC1393.10 ; systematic_id "SPCC1393.10" ; colour "2" ; gene "ctr4 ||| SPCC1393.10" ; Alias "ctr4" ; db_xref "SPD:11/11G05" ; GO "GO:0046982; protein heterodimerization activity
GO:0015679; plasma membrane copper ion transport
GO:0005886; plasma membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally induced by Cuf1; db_xref=PMID:11274192; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YLR411W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, promoter contains CuSE; date=20100103" ; primary_name "ctr4" ; product "copper transporter complex subunit Ctr4" ;
chromosome3 GeneDB CDS 818459 819328 . + . mRNA SPCC1393.10 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 819329 819698 . + . mRNA SPCC1393.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.10" ; systematic_id "SPCC1393.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 819849 820157 . - . mRNA SPCC1393.14 ; Alias "ten1" ; systematic_id "SPCC1393.14" ; colour "2" ; GO "GO:0000781; chromosome, telomeric region
GO:0070188; Stn1-Ten1 complex
GO:0005515; protein binding
GO:0043047; single-stranded telomeric DNA binding
GO:0016233; telomere capping" ; controlled_curation "term=OB fold; date=20070706 ||| term=orthologous to S. cerevisiae YLR010C; date=20070706 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; gene "ten1 ||| SPCC1393.14" ; primary_name "ten1" ; product "nuclear telomere cap complex subunit Ten1" ;
chromosome3 GeneDB CDS 819849 820157 . - . mRNA SPCC1393.14 ; colour "2" ;
chromosome3 GeneDB tRNA 820567 820637 . - . tRNA SPCTRNAGLY.11 ; systematic_id "SPCTRNAGLY.11" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033454; GCC codon-amino acid adaptor activity" ; gene "SPCTRNAGLY.11" ; product "tRNA Glycine" ; note "tRNA Gly anticodon GCC" ;
chromosome3 GeneDB 5'-UTR 821294 821643 . + . mRNA SPCC1393.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.11" ; systematic_id "SPCC1393.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 821644 822237 . + . mRNA SPCC1393.11 ; db_xref "SPD:06/06E07" ; systematic_id "SPCC1393.11" ; colour "7" ; GO "GO:0003735; structural constituent of ribosome
GO:0000002; mitochondrial genome maintenance
GO:0005762; mitochondrial large ribosomal subunit
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR085C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1393.11" ; product "mitochondrial ribosomal protein subunit L20 (predicted)" ;
chromosome3 GeneDB CDS 821644 822237 . + . mRNA SPCC1393.11 ; colour "7" ;
chromosome3 GeneDB CDS_parts 823679 824005 . + . mRNA SPCC1393.12 ; db_xref "SPD:01/01G11" ; systematic_id "SPCC1393.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1393.12" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 823679 824005 . + . mRNA SPCC1393.12 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 824006 824372 . + . mRNA SPCC1393.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.12" ; systematic_id "SPCC1393.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 825030 825104 . + . mRNA SPCC1393.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1393.13" ; systematic_id "SPCC1393.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 825105 826540 . + . mRNA SPCC1393.13 ; db_xref "SPD:23/23B08" ; systematic_id "SPCC1393.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c6orf211 ortholog; date=20100728" ; colour "10" ; gene "SPCC1393.13" ; product "DUF89 family protein" ;
chromosome3 GeneDB CDS 825105 825135 . + . mRNA SPCC1393.13 ; colour "10" ;
chromosome3 GeneDB CDS 825243 826540 . + . mRNA SPCC1393.13 ; colour "10" ;
chromosome3 GeneDB misc_feature 825136 825141 . + . misc_feature unknown_734 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 825229 825242 . + . misc_feature unknown_735 ; colour "6" ; note "ctaactttatacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 826756 827196 . + . misc_feature unknown_736 ; note "nominal overlap with cosmid SPCC1393 and cosmid SPCC2H8" ;
chromosome3 GeneDB misc_RNA 827254 827546 . + . misc_RNA SPNCRNA.64 ; Alias "prl64" ; db_xref "EMBL:AB084876 ||| PMID:12597277" ; systematic_id "SPNCRNA.64" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl64" ; gene "prl64" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB 5'-UTR 828003 828545 . + . mRNA SPCC2H8.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC2H8.02" ; systematic_id "SPCC2H8.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 828546 830297 . + . mRNA SPCC2H8.02 ; db_xref "SPD:36/36A09" ; systematic_id "SPCC2H8.02" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0005315; inorganic phosphate transporter activity
GO:0035435; phosphate transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML123C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827" ; gene "SPCC2H8.02" ; product "inorganic phosphate transporter (predicted)" ;
chromosome3 GeneDB CDS 828546 830297 . + . mRNA SPCC2H8.02 ; colour "7" ;
chromosome3 GeneDB misc_feature 830489 830777 . + . misc_feature SPCC2H8.03 ; db_xref "SPD:01/01D02" ; systematic_id "SPCC2H8.03" ; controlled_curation "term=dubious; date=19700101 ||| term=below 100 amino acid size threshold; date=19700101" ; colour "6" ; gene "SPCC2H8.03" ; product "dubious" ; note "intron unsupported by Solexa transcript data so deleted" ;
chromosome3 GeneDB CDS_parts 831178 832042 . + . mRNA SPCC2H8.04 ; db_xref "SPD:11/11F02" ; systematic_id "SPCC2H8.04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=ACN9 family; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Fungi only; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, orthologs cannot be distinguished; date=20100820" ; colour "10" ; gene "SPCC2H8.04" ; product "ACN9 family protein" ;
chromosome3 GeneDB CDS 831178 831384 . + . mRNA SPCC2H8.04 ; colour "10" ;
chromosome3 GeneDB CDS 831449 832042 . + . mRNA SPCC2H8.04 ; colour "10" ;
chromosome3 GeneDB misc_feature 831385 831390 . + . misc_feature unknown_737 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 831437 831448 . + . misc_feature unknown_738 ; colour "6" ; note "ctgatgacttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 832043 832070 . + . mRNA SPCC2H8.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC2H8.04" ; systematic_id "SPCC2H8.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 832236 832346 . - . mRNA SPCC2H8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC2H8.05c" ; systematic_id "SPCC2H8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 832347 833000 . - . mRNA SPCC2H8.05c ; db_xref "SPD:06/06D01" ; systematic_id "SPCC2H8.05c" ; synonym "SPCC63.01c" ; colour "8" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPCC2H8.05c ||| SPCC63.01c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 832347 833000 . - . mRNA SPCC2H8.05c ; colour "8" ;
chromosome3 GeneDB misc_feature 832361 832976 . + . misc_feature unknown_739 ; note "nominal overlap with cosmid SPCC63, EM:AL049522 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 832361 832976 . - . misc_feature unknown_740 ; note "nominal overlap with cosmid SPCC2H8, EM:AL049567 S. pombe chromosome 3" ;
chromosome3 GeneDB 5'-UTR 832999 833392 . - . mRNA SPCC2H8.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC2H8.05c" ; systematic_id "SPCC2H8.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 833721 833965 . - . mRNA SPCC63.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.02c" ; systematic_id "SPCC63.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 833966 835660 . - . mRNA SPCC63.02c ; systematic_id "SPCC63.02c" ; colour "2" ; gene "aah3 ||| SPCC63.02c" ; Alias "aah3" ; db_xref "SPD:45/45E11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, glycosylated; qualifier=N-linked; cv=pt_mod; db_xref=PMID:12845604; date=20060611 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060611 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0009986; cell surface
; cell wall
GO:0009897; external side of plasma membrane
GO:0005886; plasma membrane
GO:0004556; alpha-amylase activity
GO:0016798; hydrolase activity, acting on glycosyl bonds
GO:0008360; regulation of cell shape
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0044247; cellular polysaccharide catabolism
GO:0016192; vesicle-mediated transport
GO:0030476; spore wall assembly (sensu Fungi)
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "aah3" ; product "alpha-amylase homolog Aah3" ; EC_number "3.2.1.1" ;
chromosome3 GeneDB CDS 833966 835660 . - . mRNA SPCC63.02c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 835661 836015 . - . mRNA SPCC63.02c ; ID "SPCC63.02c" ; systematic_id "SPCC63.02c" ; note "mRNA from AU007495" ;
chromosome3 GeneDB 5'-UTR 837517 837604 . + . mRNA SPCC63.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.03" ; systematic_id "SPCC63.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 837605 839701 . + . mRNA SPCC63.03 ; db_xref "SPD:27/27H05" ; systematic_id "SPCC63.03" ; colour "10" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; gene "SPCC63.03" ; product "DNAJ domain protein, DNAJC11 family" ;
chromosome3 GeneDB CDS 837605 837658 . + . mRNA SPCC63.03 ; colour "10" ;
chromosome3 GeneDB CDS 837720 838933 . + . mRNA SPCC63.03 ; colour "10" ;
chromosome3 GeneDB CDS 838984 839404 . + . mRNA SPCC63.03 ; colour "10" ;
chromosome3 GeneDB CDS 839462 839701 . + . mRNA SPCC63.03 ; colour "10" ;
chromosome3 GeneDB misc_feature 837659 837664 . + . misc_feature unknown_741 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 837697 837719 . + . misc_feature unknown_742 ; colour "6" ; note "ttaacatttcctttaaactctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_RNA 838087 839594 . - . misc_RNA SPNCRNA.581 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.581" ; synonym "SPNG2AF59" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB misc_feature 838934 838939 . + . misc_feature unknown_743 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 838971 838983 . + . misc_feature unknown_744 ; colour "6" ; note "ctaatttttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 839405 839410 . + . misc_feature unknown_745 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome3 GeneDB misc_feature 839446 839461 . + . misc_feature unknown_746 ; colour "6" ; note "ctaactgttgatttag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 839962 844071 . + . mRNA SPCC63.04 ; systematic_id "SPCC63.04" ; colour "2" ; gene "mok14 ||| SPCC63.04" ; Alias "mok14" ; db_xref "SPD:48/48F12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20070309 ||| term=similar to S. pombe Mok1 and Mok11 and Mok13 and Mok12; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:16420355; date=20080430 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0030476; ascospore wall assembly
GO:0005619; fungal-type spore wall
GO:0005628; prospore membrane
GO:0030979; alpha-glucan biosynthetic process
GO:0033201; alpha-1,4-glucan synthase activity
GO:0070630; 1,4-alpha-glucan biosynthetic process" ; primary_name "mok14" ; product "alpha-1,4-glucan synthase Mok14" ; EC_number "2.4.1.183" ;
chromosome3 GeneDB CDS 839962 844071 . + . mRNA SPCC63.04 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 844394 844445 . + . mRNA SPCC63.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.05" ; systematic_id "SPCC63.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 844446 845417 . + . mRNA SPCC63.05 ; db_xref "SPD:13/13H06" ; systematic_id "SPCC63.05" ; colour "7" ; GO "GO:0031929; TOR signaling cascade" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR028W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC63.05" ; product "TAP42 family protein involved in TOR signalling (predicted)" ;
chromosome3 GeneDB CDS 844446 845417 . + . mRNA SPCC63.05 ; colour "7" ;
chromosome3 GeneDB CDS_parts 845924 846919 . + . mRNA SPCC63.06 ; db_xref "SPD:14/14E10" ; systematic_id "SPCC63.06" ; colour "10" ; GO "GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human WDR89 ortholog; date=20100728" ; gene "SPCC63.06" ; product "human WDR89 family WD repeat protein" ;
chromosome3 GeneDB CDS 845924 846919 . + . mRNA SPCC63.06 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 846920 847200 . + . mRNA SPCC63.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.06" ; systematic_id "SPCC63.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 847701 847782 . + . tRNA SPCTRNASER.08 ; systematic_id "SPCTRNASER.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033447; AGA codon-amino acid adaptor activity" ; gene "SPCTRNASER.08" ; product "tRNA Serine" ; note "tRNA Ser anticodon AGA, Cove score 59.19" ;
chromosome3 GeneDB 5'-UTR 848575 848633 . + . mRNA SPCC63.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.07" ; systematic_id "SPCC63.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 848634 849629 . + . mRNA SPCC63.07 ; db_xref "SPD:14/14E11" ; systematic_id "SPCC63.07" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006400; tRNA modification
GO:0008193; tRNA guanylyltransferase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPCC63.07" ; product "tRNA guanylyltransferase (predicted)" ; EC_number "2.7.7.-" ;
chromosome3 GeneDB CDS 848634 848869 . + . mRNA SPCC63.07 ; colour "7" ;
chromosome3 GeneDB CDS 848931 849231 . + . mRNA SPCC63.07 ; colour "7" ;
chromosome3 GeneDB CDS 849328 849432 . + . mRNA SPCC63.07 ; colour "7" ;
chromosome3 GeneDB CDS 849486 849629 . + . mRNA SPCC63.07 ; colour "7" ;
chromosome3 GeneDB misc_feature 848870 848875 . + . misc_feature unknown_747 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 848912 848930 . + . misc_feature unknown_748 ; colour "6" ; note "ctaacctttctgcttgaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 849232 849237 . + . misc_feature unknown_749 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 849433 849438 . + . misc_feature unknown_750 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 849468 849485 . + . misc_feature unknown_751 ; colour "6" ; note "cttacttatttaatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 849630 849837 . + . mRNA SPCC63.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.07" ; systematic_id "SPCC63.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 850000 850049 . - . mRNA SPCC63.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.08c" ; systematic_id "SPCC63.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 850050 852604 . - . mRNA SPCC63.08c ; systematic_id "SPCC63.08c" ; colour "2" ; gene "SPCC63.08c" ; Alias "atg1" ; db_xref "SPD:29/29D03" ; synonym "ppk36 ||| cvt10" ; GO "GO:0016239; positive regulation of macroautophagy
GO:0005829; cytosol
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0007165; signal transduction
GO:0032258; CVT pathway
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0000747; sexual reproduction
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YGL180W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "atg1" ; product "autophagy and CVT pathway serine/threonine protein kinase Atg1" ;
chromosome3 GeneDB CDS 850050 852440 . - . mRNA SPCC63.08c ; colour "2" ;
chromosome3 GeneDB CDS 852503 852604 . - . mRNA SPCC63.08c ; colour "2" ;
chromosome3 GeneDB misc_feature 852441 852455 . - . misc_feature unknown_752 ; colour "6" ; note "ctaatcgtgttgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 852497 852502 . - . misc_feature unknown_753 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 852603 852643 . - . mRNA SPCC63.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.08c" ; systematic_id "SPCC63.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB rRNA 853314 853428 . - . rRNA SPRRNA.55 ; obsolete_name "new23" ; systematic_id "SPRRNA.55" ; product "8S rRNA (predicted)" ; note "via Ensembl pipeline" ;
chromosome3 GeneDB 3'-UTR 854510 854650 . - . mRNA SPCC63.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.10c" ; systematic_id "SPCC63.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 854651 856213 . - . mRNA SPCC63.10c ; systematic_id "SPCC63.10c" ; colour "7" ; db_xref "SPD:25/25C01" ; Alias "sec59" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0004168; dolichol kinase activity
GO:0006487; protein amino acid N-linked glycosylation
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec59" ; product "dolichol kinase Sec59 (predicted)" ;
chromosome3 GeneDB CDS 854651 855926 . - . mRNA SPCC63.10c ; colour "7" ;
chromosome3 GeneDB CDS 855984 856213 . - . mRNA SPCC63.10c ; colour "7" ;
chromosome3 GeneDB misc_feature 855760 855765 . - . misc_feature unknown_754 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 855801 855811 . - . misc_feature unknown_755 ; colour "6" ; note "ttaacacaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 855833 855838 . - . misc_feature unknown_756 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 855927 855942 . - . misc_feature unknown_757 ; colour "6" ; note "ctaactcattatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 855978 855983 . - . misc_feature unknown_758 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 856212 856439 . - . mRNA SPCC63.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.10c" ; systematic_id "SPCC63.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 857041 857152 . + . mRNA SPCC63.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.11" ; systematic_id "SPCC63.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 857153 859141 . + . mRNA SPCC63.11 ; systematic_id "SPCC63.11" ; colour "7" ; gene "prp28 ||| SPCC63.11" ; Alias "prp28" ; db_xref "SPD:27/27C08" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0000354; cis assembly of pre-catalytic spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDR243C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp28" ; product "U5 snRNP-associated protein Prp28 (predicted)" ;
chromosome3 GeneDB CDS 857153 859141 . + . mRNA SPCC63.11 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 859142 859190 . + . mRNA SPCC63.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.11" ; systematic_id "SPCC63.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 859516 859778 . - . mRNA SPCC63.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC63.12c" ; systematic_id "SPCC63.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 859779 860393 . - . mRNA SPCC63.12c ; systematic_id "SPCC63.12c" ; colour "7" ; gene "pup3 ||| SPCC63.12c" ; Alias "pup3" ; db_xref "SPD:06/06H06" ; GO "GO:0004175; endopeptidase activity
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pup3" ; product "20S proteasome component beta 3, Pup3 (predicted)" ; EC_number "3.4.25.1" ;
chromosome3 GeneDB CDS 859779 860393 . - . mRNA SPCC63.12c ; colour "7" ;
chromosome3 GeneDB CDS_parts 861566 862192 . + . mRNA SPCC63.13 ; systematic_id "SPCC63.13" ; colour "10" ; gene "SPCC63.13" ; note "YMR161W same domain organization and single predicted tmm helix" ; db_xref "SPD:07/07B08" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "DNAJ domain protein" ;
chromosome3 GeneDB CDS 861566 862192 . + . mRNA SPCC63.13 ; colour "10" ;
chromosome3 GeneDB CDS_parts 862712 866266 . + . mRNA SPCC63.14 ; db_xref "SPD:30/30E07" ; systematic_id "SPCC63.14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YMR031C and YKL050C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC63.14" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 862712 866266 . + . mRNA SPCC63.14 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 866267 866807 . + . mRNA SPCC63.14 ; ID "SPCC63.14" ; systematic_id "SPCC63.14" ; note "mRNA from AU009885" ;
chromosome3 GeneDB misc_feature 867474 870279 . + . misc_feature unknown_759 ; note "nominal overlap with cosmid SPCC16A11 and cosmid SPCC63" ;
chromosome3 GeneDB conflict 867866 867875 . + . conflict unknown_760 ; citation "[1]" ; note "extra T added here, to match 10Ts in overlap with c63" ;
chromosome3 GeneDB CDS_parts 867996 868982 . + . mRNA SPCC16A11.01 ; systematic_id "SPCC16A11.01" ; colour "7" ; gene "SPCC63.15 ||| SPCC16A11.01" ; Alias "SPCC63.15" ; db_xref "SPD:14/14C12" ; synonym "SPCC63.15" ; GO "GO:0048017; inositol lipid-mediated signaling
GO:0007033; vacuole organization and biogenesis
GO:0030036; actin cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL051W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPCC63.15" ; product "plasma membrane protein involved in inositol lipid-mediated signaling (predicted)" ;
chromosome3 GeneDB CDS 867996 868982 . + . mRNA SPCC16A11.01 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 868983 869260 . + . mRNA SPCC16A11.01 ; ID "SPCC16A11.01" ; systematic_id "SPCC16A11.01" ; note "mRNA from AU012964" ;
chromosome3 GeneDB 5'-UTR 869690 869700 . + . mRNA SPCC16A11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.02" ; systematic_id "SPCC16A11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 869701 872071 . + . mRNA SPCC16A11.02 ; systematic_id "SPCC16A11.02" ; colour "7" ; gene "SPCC63.16 ||| SPCC16A11.02 ||| utp13" ; Alias "utp13" ; db_xref "SPD:28/28E02" ; synonym "SPCC63.16" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR222C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "utp13" ; product "U3 snoRNP-associated protein Utp13 (predicted)" ;
chromosome3 GeneDB CDS 869701 869726 . + . mRNA SPCC16A11.02 ; colour "7" ;
chromosome3 GeneDB CDS 869764 872071 . + . mRNA SPCC16A11.02 ; colour "7" ;
chromosome3 GeneDB misc_feature 869727 869732 . + . misc_feature unknown_761 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 869753 869763 . + . misc_feature unknown_762 ; colour "6" ; note "ctaataattag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 872072 872165 . + . mRNA SPCC16A11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.02" ; systematic_id "SPCC16A11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 872276 872347 . - . mRNA SPCC16A11.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.03c" ; systematic_id "SPCC16A11.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 872348 874056 . - . mRNA SPCC16A11.03c ; db_xref "SPD:35/35E06" ; systematic_id "SPCC16A11.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101" ; colour "10" ; gene "SPCC16A11.03c" ; product "DUF2009 protein" ;
chromosome3 GeneDB CDS 872348 873641 . - . mRNA SPCC16A11.03c ; colour "10" ;
chromosome3 GeneDB CDS 873950 874056 . - . mRNA SPCC16A11.03c ; colour "10" ;
chromosome3 GeneDB misc_feature 873642 873659 . - . misc_feature unknown_763 ; colour "6" ; note "ctaacaatgaaattatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 873944 873949 . - . misc_feature unknown_764 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 874608 877640 . + . mRNA SPCC16A11.04 ; systematic_id "SPCC16A11.04" ; colour "7" ; gene "SPCC16A11.04" ; Alias "snx12" ; db_xref "SPD:29/29H04" ; GO "GO:0005737; cytoplasm
GO:0035091; phosphoinositide binding
GO:0005200; structural constituent of cytoskeleton
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YML104C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snx12" ; product "sorting nexin Snx12 (predicted)" ;
chromosome3 GeneDB CDS 874608 877640 . + . mRNA SPCC16A11.04 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 877641 877803 . + . mRNA SPCC16A11.04 ; ID "SPCC16A11.04" ; systematic_id "SPCC16A11.04" ; note "mRNA from spc03900" ;
chromosome3 GeneDB 3'-UTR 877887 877938 . - . mRNA SPCC16A11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.05c" ; systematic_id "SPCC16A11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 877939 878634 . - . mRNA SPCC16A11.05c ; systematic_id "SPCC16A11.05c" ; colour "2" ; gene "dim1 ||| SPCC16A11.05c" ; Alias "dim1" ; db_xref "SPD:08/08B08" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0071780; mitotic cell cycle G2/M transition checkpoint" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9182666; date=19700101 ||| term=thioredoxin family; date=20070522 ||| term=orthologous to S. cerevisiae YPR082C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene name conflict; date=20100126 ||| term=phenotype, cut; allele=dim1-35; db_xref=PMID:9182666; date=20100726 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9182666; date=20100726" ; primary_name "dim1" ; product "U4/U6 x U5 tri-snRNP complex subunit Dim1" ;
chromosome3 GeneDB CDS 877939 878154 . - . mRNA SPCC16A11.05c ; colour "2" ;
chromosome3 GeneDB CDS 878208 878318 . - . mRNA SPCC16A11.05c ; colour "2" ;
chromosome3 GeneDB CDS 878402 878442 . - . mRNA SPCC16A11.05c ; colour "2" ;
chromosome3 GeneDB CDS 878524 878549 . - . mRNA SPCC16A11.05c ; colour "2" ;
chromosome3 GeneDB CDS 878600 878634 . - . mRNA SPCC16A11.05c ; colour "2" ;
chromosome3 GeneDB misc_feature 878155 878174 . - . misc_feature unknown_765 ; colour "6" ; note "ctaaccttattaccatctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 878202 878207 . - . misc_feature unknown_766 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 878319 878337 . - . misc_feature unknown_767 ; colour "6" ; note "ctaacgcgtaacggaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 878396 878401 . - . misc_feature unknown_768 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 878443 878465 . - . misc_feature unknown_769 ; colour "6" ; note "ttaacctttttttttataaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 878518 878523 . - . misc_feature unknown_770 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 878550 878566 . - . misc_feature unknown_771 ; colour "6" ; note "ctaacttatgtttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 878594 878599 . - . misc_feature unknown_772 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 878633 878655 . - . mRNA SPCC16A11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.05c" ; systematic_id "SPCC16A11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 879647 881167 . - . mRNA SPCC16A11.06c ; systematic_id "SPCC16A11.06c" ; colour "7" ; gene "gpi10 ||| SPCC16A11.06c" ; Alias "gpi10" ; db_xref "SPD:24/24F09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL142C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0004584; dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity
GO:0030176; integral to endoplasmic reticulum membrane" ; primary_name "gpi10" ; product "pig-B (predicted)" ; EC_number "2.4.1.-" ;
chromosome3 GeneDB CDS 879647 881167 . - . mRNA SPCC16A11.06c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 881131 881165 . + . mRNA SPCC16A11.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.07" ; systematic_id "SPCC16A11.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 881166 881660 . + . mRNA SPCC16A11.07 ; systematic_id "SPCC16A11.07" ; colour "2" ; gene "coq10 ||| SPCC16A11.07" ; Alias "coq10" ; db_xref "SPD:04/04G07" ; GO "GO:0048039; ubiquinone binding
GO:0045333; cellular respiration
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to H202; db_xref=PMID:19120452; date=20100624 ||| term=orthologous to S. cerevisiae YOL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complemented by human COQ10; db_xref=PMID:19120452; date=20100624 ||| term=human COQ10 ortholog; date=20100701" ; primary_name "coq10" ; product "mitochondrial ubiquinone binding protein Coq10" ;
chromosome3 GeneDB CDS 881166 881660 . + . mRNA SPCC16A11.07 ; colour "2" ;
chromosome3 GeneDB misc_RNA 882518 882834 . - . misc_RNA SPNCRNA.16 ; Alias "prl16" ; db_xref "PMID:12597277 ||| EMBL:AB084828" ; systematic_id "SPNCRNA.16" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl16" ; gene "prl16 ||| SPNCRNA.16" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB CDS_parts 883392 885173 . + . mRNA SPCC16A11.08 ; systematic_id "SPCC16A11.08" ; colour "7" ; gene "atg20 ||| SPCC16A11.08" ; Alias "atg20" ; db_xref "SPD:36/36C11" ; GO "GO:0006914; autophagy
GO:0042147; retrograde transport, endosome to Golgi
GO:0005768; endosome
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0032258; CVT pathway
GO:0034498; early endosome to Golgi transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL113C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atg20" ; product "sorting nexin Atg20 (predicted)" ;
chromosome3 GeneDB CDS 883392 883535 . + . mRNA SPCC16A11.08 ; colour "7" ;
chromosome3 GeneDB CDS 883594 883702 . + . mRNA SPCC16A11.08 ; colour "7" ;
chromosome3 GeneDB CDS 883822 885173 . + . mRNA SPCC16A11.08 ; colour "7" ;
chromosome3 GeneDB misc_feature 883536 883541 . + . misc_feature unknown_773 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 883576 883593 . + . misc_feature unknown_774 ; colour "6" ; note "ctaatttttatactgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 883703 883708 . + . misc_feature unknown_775 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 885750 886100 . - . mRNA SPCC16A11.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.09c" ; systematic_id "SPCC16A11.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 886101 886733 . - . mRNA SPCC16A11.09c ; systematic_id "SPCC16A11.09c" ; colour "7" ; gene "tim23 ||| SPCC16A11.09c" ; Alias "tim23" ; db_xref "SPD:42/42F01" ; GO "GO:0005744; mitochondrial inner membrane presequence translocase complex
GO:0030150; protein import into mitochondrial matrix
GO:0015450; protein translocase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tim23" ; product "TIM23 translocase complex subunit Tim23 (predicted)" ;
chromosome3 GeneDB CDS 886101 886733 . - . mRNA SPCC16A11.09c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 887180 887405 . - . mRNA SPCC16A11.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.10c" ; systematic_id "SPCC16A11.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 887406 888387 . - . mRNA SPCC16A11.10c ; systematic_id "SPCC16A11.10c" ; colour "2" ; gene "oca8 ||| SPCC16A11.10c" ; Alias "oca8" ; db_xref "SPD:14/14B11" ; GO "GO:0009055; electron carrier activity
GO:0006696; ergosterol biosynthetic process
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL111C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "oca8" ; product "cytochrome b5 (predicted)" ;
chromosome3 GeneDB CDS 887406 887555 . - . mRNA SPCC16A11.10c ; colour "2" ;
chromosome3 GeneDB CDS 887642 887733 . - . mRNA SPCC16A11.10c ; colour "2" ;
chromosome3 GeneDB CDS 888240 888387 . - . mRNA SPCC16A11.10c ; colour "2" ;
chromosome3 GeneDB misc_feature 887556 887569 . - . misc_feature unknown_776 ; colour "6" ; note "ctaacatattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 887636 887641 . - . misc_feature unknown_777 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 887734 887747 . - . misc_feature unknown_778 ; colour "6" ; note "ttaacttgttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 888234 888239 . - . misc_feature unknown_779 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 888388 888438 . - . mRNA SPCC16A11.10c ; ID "SPCC16A11.10c" ; systematic_id "SPCC16A11.10c" ; note "mRNA from SPO131354" ;
chromosome3 GeneDB 5'-UTR 888629 888857 . + . mRNA SPCC16A11.11 ; ID "SPCC16A11.11" ; systematic_id "SPCC16A11.11" ; note "mRNA from AF087833" ;
chromosome3 GeneDB CDS_parts 888858 889205 . + . mRNA SPCC16A11.11 ; systematic_id "SPCC16A11.11" ; colour "7" ; gene "mrpl31 ||| SPCC16A11.11" ; Alias "mrpl31" ; db_xref "SPD:02/02B10" ; GO "GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL138C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mrpl31" ; product "mitochondrial ribosomal protein subunit L31 (predicted)" ;
chromosome3 GeneDB CDS 888858 889205 . + . mRNA SPCC16A11.11 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 889206 889295 . + . mRNA SPCC16A11.11 ; ID "SPCC16A11.11" ; systematic_id "SPCC16A11.11" ; note "mRNA from AF087833" ;
chromosome3 GeneDB 3'-UTR 889327 889436 . - . mRNA SPCC16A11.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.12c" ; systematic_id "SPCC16A11.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 889437 892211 . - . mRNA SPCC16A11.12c ; systematic_id "SPCC16A11.12c" ; colour "2" ; gene "ubp1 ||| SPCC16A11.12c" ; db_xref "SPD:47/47C02" ; Alias "ubp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL197W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005783; endoplasmic reticulum" ; primary_name "ubp1" ; product "ubiquitin C-terminal hydrolase Ubp1" ;
chromosome3 GeneDB CDS 889437 891666 . - . mRNA SPCC16A11.12c ; colour "2" ;
chromosome3 GeneDB CDS 891892 892211 . - . mRNA SPCC16A11.12c ; colour "2" ;
chromosome3 GeneDB misc_feature 891667 891681 . - . misc_feature unknown_780 ; colour "6" ; note "ctaactcaaatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 891886 891891 . - . misc_feature unknown_781 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 892210 892295 . - . mRNA SPCC16A11.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.12c" ; systematic_id "SPCC16A11.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 892406 892719 . + . mRNA SPCC16A11.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.13" ; systematic_id "SPCC16A11.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 892720 893514 . + . mRNA SPCC16A11.13 ; systematic_id "SPCC16A11.13" ; colour "2" ; gene "usp106 ||| luc7 ||| SPCC16A11.13" ; Alias "usp106" ; db_xref "SPD:10/10A09" ; synonym "luc7" ; GO "GO:0005685; snRNP U1
GO:0003729; mRNA binding
GO:0006376; mRNA splice site selection
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YDL087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "usp106" ; product "U1 snRNP-associated protein Usp106" ;
chromosome3 GeneDB CDS 892720 893514 . + . mRNA SPCC16A11.13 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 893515 893836 . + . mRNA SPCC16A11.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.13" ; systematic_id "SPCC16A11.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 894166 894170 . + . mRNA SPCC16A11.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.14" ; systematic_id "SPCC16A11.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 894171 895427 . + . mRNA SPCC16A11.14 ; systematic_id "SPCC16A11.14" ; colour "2" ; gene "sfh1 ||| SPCC16A11.14" ; Alias "sfh1" ; db_xref "SPD:20/20B02" ; GO "GO:0016586; RSC complex
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0005515; protein binding
GO:0043044; ATP-dependent chromatin remodeling
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-GATA type; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14655046; date=19700101 ||| term=orthologous to S. cerevisiae YLR321C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=human SMARCB1 ortholog; date=20100218" ; primary_name "sfh1" ; product "RSC complex subunit Sfh1" ;
chromosome3 GeneDB CDS 894171 895427 . + . mRNA SPCC16A11.14 ; colour "2" ;
chromosome3 GeneDB misc_RNA 895569 895690 . + . misc_RNA SPNCRNA.125 ; systematic_id "SPNCRNA.125" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.125" ; product "non-coding RNA (predicted)" ; note "spc01175" ;
chromosome3 GeneDB misc_RNA 895866 895962 . - . misc_RNA SPNCRNA.126 ; db_xref "EMBL:AB084889" ; systematic_id "SPNCRNA.126" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AB084889; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AB084889; date=20050412" ; gene "SPNCRNA.126" ; product "non-coding RNA (predicted)" ; note "trans-spliced transcript ||| see also 28449..28527" ;
chromosome3 GeneDB misc_RNA 895922 896000 . + . misc_RNA SPNCRNA.127 ; db_xref "EMBL:AB084889" ; systematic_id "SPNCRNA.127" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AB084889; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AB084889; date=20050412" ; gene "SPNCRNA.127" ; product "non-coding RNA (predicted)" ; note "trans-spliced transcript ||| see also complement(28393..28489)" ;
chromosome3 GeneDB 3'-UTR 896090 896181 . - . mRNA SPCC16A11.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.15c" ; systematic_id "SPCC16A11.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 896182 896535 . - . mRNA SPCC16A11.15c ; db_xref "SPD:02/02D01" ; systematic_id "SPCC16A11.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC16A11.15c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 896182 896535 . - . mRNA SPCC16A11.15c ; colour "8" ;
chromosome3 GeneDB 5'-UTR 896534 896915 . - . mRNA SPCC16A11.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.15c" ; systematic_id "SPCC16A11.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 897682 899155 . - . mRNA SPCC16A11.16c ; systematic_id "SPCC16A11.16c" ; colour "2" ; gene "SPCC16A11.16c" ; Alias "rpn1302" ; db_xref "SPD:23/23G09" ; synonym "rpn13 ||| rpn13b" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR421C; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ADRM1 ortholog; date=20100908" ; GO "GO:0006511; ubiquitin-dependent protein catabolic process
GO:0008541; proteasome regulatory particle, lid subcomplex
GO:0000502; proteasome complex" ; primary_name "rpn1302" ; product "19S proteasome regulatory subunit Rpn13b" ;
chromosome3 GeneDB CDS 897682 898632 . - . mRNA SPCC16A11.16c ; colour "2" ;
chromosome3 GeneDB CDS 898743 898827 . - . mRNA SPCC16A11.16c ; colour "2" ;
chromosome3 GeneDB CDS 899025 899155 . - . mRNA SPCC16A11.16c ; colour "2" ;
chromosome3 GeneDB misc_feature 898633 898648 . - . misc_feature unknown_782 ; colour "6" ; note "ctaacatataatgaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 898737 898742 . - . misc_feature unknown_783 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 898828 898842 . - . misc_feature unknown_784 ; colour "6" ; note "ctgacatttgtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 899019 899024 . - . misc_feature unknown_785 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 899154 899226 . - . mRNA SPCC16A11.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.16c" ; systematic_id "SPCC16A11.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB intron 900128 900198 . + . intron unknown_786 ;
chromosome3 GeneDB 5'-UTR 900382 900401 . + . mRNA SPCC16A11.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.17" ; systematic_id "SPCC16A11.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 900402 903137 . + . mRNA SPCC16A11.17 ; systematic_id "SPCC16A11.17" ; colour "2" ; gene "cdc21 ||| mcm4 ||| SPCC16A11.17 ||| SPCC24B10.01" ; note "possibly spliced at C-term" ; Alias "cdc21" ; db_xref "SPD:47/47B07" ; synonym "mcm4 ||| SPCC24B10.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705 ||| term=orthologous to S. cerevisiae YPR019W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0042555; MCM complex
GO:0005656; pre-replicative complex
GO:0004003; ATP-dependent DNA helicase activity
GO:0006270; DNA replication initiation
GO:0006270; DNA replication initiation
GO:0006271; DNA strand elongation during DNA replication
GO:0007090; regulation of S-phase of mitotic cell cycle
GO:0031390; nuclear replication fork" ; primary_name "cdc21" ; product "MCM complex subunit Cdc21" ;
chromosome3 GeneDB CDS 900402 903137 . + . mRNA SPCC16A11.17 ; colour "2" ;
chromosome3 GeneDB misc_feature 901914 902040 . + . misc_feature unknown_787 ; note "nominal overlap with cosmid SPCC24B10 and cosmid SPCC16A11" ;
chromosome3 GeneDB intron 903111 903145 . + . intron SPCC16A11.17 ; systematic_id "SPCC16A11.17" ;
chromosome3 GeneDB 3'-UTR 903138 903350 . + . mRNA SPCC16A11.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC16A11.17" ; systematic_id "SPCC16A11.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 903461 903549 . - . mRNA SPCC24B10.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.02c" ; systematic_id "SPCC24B10.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 903550 904899 . - . mRNA SPCC24B10.02c ; db_xref "SPD:20/20H09" ; systematic_id "SPCC24B10.02c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL041W and YJR049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0019674; NAD metabolism
GO:0003951; NAD+ kinase activity" ; gene "SPCC24B10.02c" ; product "NAD/NADH kinase (predicted)" ; EC_number "2.7.1.23" ;
chromosome3 GeneDB CDS 903550 904899 . - . mRNA SPCC24B10.02c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 904898 905056 . - . mRNA SPCC24B10.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.02c" ; systematic_id "SPCC24B10.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 906321 906894 . + . mRNA SPCC24B10.03 ; db_xref "SPD:06/06B05" ; systematic_id "SPCC24B10.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC24B10.03" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 906321 906464 . + . mRNA SPCC24B10.03 ; colour "8" ;
chromosome3 GeneDB CDS 906652 906894 . + . mRNA SPCC24B10.03 ; colour "8" ;
chromosome3 GeneDB misc_feature 906465 906470 . + . misc_feature unknown_788 ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 906628 906651 . + . misc_feature unknown_789 ; note "ctaacccatttattatttttgtag, splice branch and acceptor" ;
chromosome3 GeneDB 5'-UTR 907642 907685 . + . mRNA SPCC24B10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.04" ; systematic_id "SPCC24B10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 907686 908285 . + . mRNA SPCC24B10.04 ; db_xref "SPD:06/06F09" ; systematic_id "SPCC24B10.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC24B10.04" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 907686 908285 . + . mRNA SPCC24B10.04 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 908286 908631 . + . mRNA SPCC24B10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.04" ; systematic_id "SPCC24B10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 908961 908976 . + . mRNA SPCC24B10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.05" ; systematic_id "SPCC24B10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 908977 909465 . + . mRNA SPCC24B10.05 ; systematic_id "SPCC24B10.05" ; colour "7" ; gene "SPCC24B10.05 ||| tim9" ; Alias "tim9" ; db_xref "SPD:04/04F07" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0005758; mitochondrial intermembrane space
GO:0042719; mitochondrial intermembrane space protein transporter complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-Tim10/DDP type; date=19700101 ||| term=orthologous to S. cerevisiae YEL020W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure may be incorrect; date=20100606" ; primary_name "tim9" ; product "Tim9-Tim10 complex subunit Tim9 (predicted)" ;
chromosome3 GeneDB CDS 908977 909054 . + . mRNA SPCC24B10.05 ; colour "7" ;
chromosome3 GeneDB CDS 909289 909465 . + . mRNA SPCC24B10.05 ; colour "7" ;
chromosome3 GeneDB misc_feature 909055 909060 . + . misc_feature unknown_790 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 909273 909288 . + . misc_feature unknown_791 ; note "ttaacatgaattatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 909466 909621 . + . mRNA SPCC24B10.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.05" ; systematic_id "SPCC24B10.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 910392 910509 . + . mRNA SPCC24B10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.06" ; systematic_id "SPCC24B10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 910510 911259 . + . mRNA SPCC24B10.06 ; db_xref "SPD:09/09C01" ; systematic_id "SPCC24B10.06" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; colour "8" ; GO "GO:0009986; cell surface" ; gene "SPCC24B10.06" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 910510 910633 . + . mRNA SPCC24B10.06 ; colour "8" ;
chromosome3 GeneDB CDS 910848 910998 . + . mRNA SPCC24B10.06 ; colour "8" ;
chromosome3 GeneDB CDS 911064 911259 . + . mRNA SPCC24B10.06 ; colour "8" ;
chromosome3 GeneDB misc_feature 910634 910639 . + . misc_feature unknown_792 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 910830 910847 . + . misc_feature unknown_793 ; note "ctaactcagtatatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 910999 911004 . + . misc_feature unknown_794 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 911048 911063 . + . misc_feature unknown_795 ; note "ctaatattatttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 911260 911931 . + . mRNA SPCC24B10.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.06" ; systematic_id "SPCC24B10.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 912536 913116 . + . mRNA SPCC24B10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.07" ; systematic_id "SPCC24B10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 913117 914897 . + . mRNA SPCC24B10.07 ; systematic_id "SPCC24B10.07" ; colour "2" ; gene "gad8 ||| SPCC24B10.07" ; Alias "gad8" ; db_xref "SPD:45/45G11" ; GO "GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0031929; TOR signaling pathway
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0006468; protein amino acid phosphorylation
GO:2000248; negative regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12805221; date=19700101 ||| term=phenotype, cell morphology, elongated cells; allele=gad2-1; cv=phenotype; db_xref=PMID:12805221; date=19700101 ||| term=orthologous to S. cerevisiae YKL126W and YMR104C; date=19700101 ||| term=C2 domain; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:12805221; cv=pt_mod; date=20090213 ||| term=target of Ksg1; qualifier=phosphorylated_by; db_xref=PMID:12805221; date=20100826" ; primary_name "gad8" ; product "AGC family protein kinase Gad8" ;
chromosome3 GeneDB CDS 913117 913138 . + . mRNA SPCC24B10.07 ; colour "2" ;
chromosome3 GeneDB CDS 913210 914897 . + . mRNA SPCC24B10.07 ; colour "2" ;
chromosome3 GeneDB misc_feature 913139 913144 . + . misc_feature unknown_796 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 913188 913209 . + . misc_feature unknown_797 ; note "ctaacagcttttcgctttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 914346 914348 . + . misc_feature unknown_798 ; note "phosphorylation site; by Ksg1p; (PMID 12805221)" ;
chromosome3 GeneDB misc_feature 914766 914768 . + . misc_feature unknown_799 ; note "phosphorylation site; by Tor1p; (PMID 12805221)" ;
chromosome3 GeneDB 3'-UTR 914898 915011 . + . mRNA SPCC24B10.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.07" ; systematic_id "SPCC24B10.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 915175 915381 . - . mRNA SPCC24B10.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.08c" ; systematic_id "SPCC24B10.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 915382 916695 . - . mRNA SPCC24B10.08c ; systematic_id "SPCC24B10.08c" ; colour "2" ; gene "ada2 ||| SPCC24B10.08c" ; Alias "ada2" ; db_xref "SPD:22/22H07" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0003713; transcription coactivator activity
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006366; transcription from RNA polymerase II promoter
GO:0044154; histone H3-K14 acetylation
GO:0043971; histone H3-K18 acetylation
GO:0043972; histone H3-K23 acetylation
GO:0043970; histone H3-K9 acetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR448W; date=19700101 ||| term=Myb family; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-ZZ type; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19056896; date=20090112" ; primary_name "ada2" ; product "SAGA complex subunit Ada2" ;
chromosome3 GeneDB CDS 915382 916695 . - . mRNA SPCC24B10.08c ; colour "2" ;
chromosome3 GeneDB CDS_parts 917864 918326 . + . mRNA SPCC24B10.09 ; systematic_id "SPCC24B10.09" ; colour "7" ; gene "rps1702 ||| rps17-2 ||| rps17 ||| SPCC24B10.09" ; Alias "rps1702" ; db_xref "SPD:04/04C01" ; synonym "rps17-2 ||| rps17" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML024W and YDR447C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1702" ; product "40S ribosomal protein S17 (predicted)" ;
chromosome3 GeneDB CDS 917864 917866 . + . mRNA SPCC24B10.09 ; colour "7" ;
chromosome3 GeneDB CDS 917931 918326 . + . mRNA SPCC24B10.09 ; colour "7" ;
chromosome3 GeneDB misc_feature 917867 917872 . + . misc_feature unknown_800 ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 917917 917930 . + . misc_feature unknown_801 ; note "ctgacaaaacatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 918327 918367 . + . mRNA SPCC24B10.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.09" ; systematic_id "SPCC24B10.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 918421 918771 . - . mRNA SPCC24B10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.10c" ; systematic_id "SPCC24B10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 918772 919839 . - . mRNA SPCC24B10.10c ; db_xref "SPD:16/16D08" ; systematic_id "SPCC24B10.10c" ; colour "7" ; GO "GO:0016887; ATPase activity
GO:0006626; protein targeting to mitochondrion
GO:0005741; mitochondrial outer membrane
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YGR028W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC24B10.10c" ; product "mitochondrial outer membrane ATPase Msp1 (predicted)" ;
chromosome3 GeneDB CDS 918772 919839 . - . mRNA SPCC24B10.10c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 919838 919906 . - . mRNA SPCC24B10.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.10c" ; systematic_id "SPCC24B10.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 920455 921221 . - . mRNA SPCC24B10.11c ; systematic_id "SPCC24B10.11c" ; colour "7" ; gene "SPCC24B10.11c ||| mft1" ; Alias "mft1" ; db_xref "SPD:43/43B09" ; GO "GO:0006406; mRNA export from nucleus
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0000347; THO complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; date=20061212 ||| term=orthologous to S. cerevisiae YMl062C; date=19700101 ||| term=human THOC7 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mft1" ; product "THO complex subunit 7 Mft1 (predicted)" ;
chromosome3 GeneDB CDS 920455 920686 . - . mRNA SPCC24B10.11c ; colour "7" ;
chromosome3 GeneDB CDS 920736 920886 . - . mRNA SPCC24B10.11c ; colour "7" ;
chromosome3 GeneDB CDS 920943 921161 . - . mRNA SPCC24B10.11c ; colour "7" ;
chromosome3 GeneDB CDS 921215 921221 . - . mRNA SPCC24B10.11c ; colour "7" ;
chromosome3 GeneDB misc_feature 920687 920702 . - . misc_feature unknown_802 ; note "ctgaccgggtttacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 920730 920735 . - . misc_feature unknown_803 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 920887 920942 . - . intron SPCC24B10.11c ; systematic_id "SPCC24B10.11c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 920911 920926 . - . misc_feature unknown_804 ; note "gtaactttaagtacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 920937 920942 . - . misc_feature unknown_805 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 921162 921177 . - . misc_feature unknown_806 ; note "ttaaccgatatgtcag, splice branch and acceptor" ;
chromosome3 GeneDB intron 921162 921214 . - . intron SPCC24B10.11c ; systematic_id "SPCC24B10.11c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 921209 921214 . - . misc_feature unknown_807 ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB intron 921345 921391 . + . intron unknown_808 ;
chromosome3 GeneDB 5'-UTR 921391 921421 . + . mRNA SPCC24B10.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.12" ; systematic_id "SPCC24B10.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 921422 921946 . + . mRNA SPCC24B10.12 ; systematic_id "SPCC24B10.12" ; colour "7" ; gene "SPCC24B10.12" ; Alias "cgi121" ; db_xref "SPD:05/05C05" ; GO "GO:0019901; protein kinase binding
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0000723; telomere maintenance
GO:0000408; EKC/KEOPS protein complex
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0000781; chromosome, telomeric region" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TPRKB ortholog; date=20100909" ; primary_name "cgi121" ; product "EKC/KEOPS complex subunit Cgi121 (predicted)" ;
chromosome3 GeneDB CDS 921422 921946 . + . mRNA SPCC24B10.12 ; colour "7" ;
chromosome3 GeneDB CDS_parts 923069 923491 . + . mRNA SPCC24B10.13 ; systematic_id "SPCC24B10.13" ; colour "2" ; gene "skb5 ||| SPCC24B10.13" ; Alias "skb5" ; db_xref "SPD:03/03D12" ; GO "GO:0019901; protein kinase binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR162C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Shk1; qualifier=activates; db_xref=PMID:10593886; date=20100427" ; primary_name "skb5" ; product "Shk1 kinase binding protein 5" ;
chromosome3 GeneDB CDS 923069 923491 . + . mRNA SPCC24B10.13 ; colour "2" ;
chromosome3 GeneDB snoRNA 923877 924086 . + . snoRNA SPSNORNA.46 ; Alias "snR94" ; db_xref "EMBL:AJ632012 ||| PMID:15716270" ; systematic_id "SPSNORNA.46" ; primary_name "snR94" ; product "small nucleolar RNA snR94" ;
chromosome3 GeneDB CDS_parts 924212 924936 . - . mRNA SPCC24B10.14c ; systematic_id "SPCC24B10.14c" ; colour "2" ; gene "xlf1 ||| nej1 ||| SPCC24B10.14c ||| mug104" ; Alias "xlf1" ; db_xref "SPD:08/08F04" ; synonym "nej1 ||| mug104" ; GO "GO:0032807; DNA ligase IV complex
GO:0006302; double-strand break repair
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0000724; double-strand break repair via homologous recombination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human NHEJ1 ortholog; date=20060627 ||| term=disease associated, cancer; date=20070104 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17151234; date=20070104 ||| term=orthologous to S. cerevisiae YLR265C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "xlf1" ; product "xrcc4 like factor, cernunnon" ;
chromosome3 GeneDB CDS 924212 924667 . - . mRNA SPCC24B10.14c ; colour "2" ;
chromosome3 GeneDB CDS 924781 924936 . - . mRNA SPCC24B10.14c ; colour "2" ;
chromosome3 GeneDB misc_feature 924668 924682 . - . misc_feature unknown_809 ; note "ttaacttttaaacag, splice branch and acceptor" ;
chromosome3 GeneDB intron 924668 924780 . - . intron SPCC24B10.14c ; systematic_id "SPCC24B10.14c" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 924775 924780 . - . misc_feature unknown_810 ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB tRNA 925852 925924 . + . tRNA SPCTRNAARG.09 ; systematic_id "SPCTRNAARG.09" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033440; ACG codon-amino acid adaptor activity" ; gene "SPCTRNAARG.09" ; product "tRNA Arginine" ; note "tRNA Arg anticodon ACG, Cove score 75.46" ;
chromosome3 GeneDB rRNA 926108 926294 . + . rRNA SPRRNA.26 ; systematic_id "SPRRNA.26" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.26" ; product "5S rRNA" ; note "SPRG5SC Yeast (s.pombe) 5S rRRNA gene and flanks" ;
chromosome3 GeneDB misc_RNA 926437 926624 . + . misc_RNA SPNCRNA.475 ; db_xref "PMID:18488015" ; synonym "SPNG2248" ; systematic_id "SPNCRNA.475" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB intron 926625 926671 . + . intron unknown_811 ; note "confirmed" ;
chromosome3 GeneDB misc_RNA 926672 926806 . + . misc_RNA SPNCRNA.526 ; db_xref "PMID:18488015" ; synonym "SPNG2248" ; systematic_id "SPNCRNA.526" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 927401 927624 . + . mRNA SPCC24B10.15 ; ID "SPCC24B10.15" ; systematic_id "SPCC24B10.15" ; note "UTR derived from CRUK ccg.O.743, may contain further splicing" ;
chromosome3 GeneDB CDS_parts 927999 929387 . + . mRNA SPCC24B10.15 ; db_xref "SPD:21/21E03" ; systematic_id "SPCC24B10.15" ; colour "7" ; GO "GO:0000166; nucleotide binding
GO:0004521; endoribonuclease activity
GO:0006351; transcription, DNA dependent
GO:0071032; nuclear mRNA surveillance of mRNP export" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=PINc domain; date=20091004" ; gene "SPCC24B10.15" ; product "RNA endoribonuclease involved in mRNP quality control (predicted)" ;
chromosome3 GeneDB CDS 927999 929387 . + . mRNA SPCC24B10.15 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 929475 929754 . - . mRNA SPCC24B10.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.16c" ; systematic_id "SPCC24B10.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 929755 930087 . - . mRNA SPCC24B10.16c ; db_xref "SPD:01/01H09" ; systematic_id "SPCC24B10.16c" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPCC24B10.16c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 929755 930087 . - . mRNA SPCC24B10.16c ; colour "8" ;
chromosome3 GeneDB 5'-UTR 930086 930246 . - . mRNA SPCC24B10.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.16c" ; systematic_id "SPCC24B10.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 930521 930590 . + . mRNA SPCC24B10.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.17" ; systematic_id "SPCC24B10.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 930591 931386 . + . mRNA SPCC24B10.17 ; systematic_id "SPCC24B10.17" ; colour "7" ; gene "emp24 ||| SPCC24B10.17" ; Alias "emp24" ; db_xref "SPD:10/10A11" ; GO "GO:0030134; ER to Golgi transport vesicle
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human TMED2 ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL200C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "emp24" ; product "COPII-coated vesicle component Emp24 (predicted)" ;
chromosome3 GeneDB CDS 930591 930684 . + . mRNA SPCC24B10.17 ; colour "7" ;
chromosome3 GeneDB CDS 930751 930947 . + . mRNA SPCC24B10.17 ; colour "7" ;
chromosome3 GeneDB CDS 931078 931386 . + . mRNA SPCC24B10.17 ; colour "7" ;
chromosome3 GeneDB misc_feature 930685 930690 . + . misc_feature unknown_812 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 930685 930750 . + . intron SPCC24B10.17 ; systematic_id "SPCC24B10.17" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 930733 930750 . + . misc_feature unknown_813 ; note "ctaatgaagcaaacttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 930948 930953 . + . misc_feature unknown_814 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 930948 931077 . + . intron SPCC24B10.17 ; systematic_id "SPCC24B10.17" ; note "Intron confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 931062 931077 . + . misc_feature unknown_815 ; note "ctaacaacatcaatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 931387 931841 . + . mRNA SPCC24B10.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.17" ; systematic_id "SPCC24B10.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 932007 932021 . + . mRNA SPCC24B10.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.18" ; systematic_id "SPCC24B10.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 932022 932638 . + . mRNA SPCC24B10.18 ; db_xref "SPD:06/06H09" ; systematic_id "SPCC24B10.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR363W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c19orf53 ortholog; date=20100728" ; colour "10" ; gene "SPCC24B10.18" ; product "human Leydig cell tumor 10 kDa protein homolog" ;
chromosome3 GeneDB CDS 932022 932112 . + . mRNA SPCC24B10.18 ; colour "10" ;
chromosome3 GeneDB CDS 932395 932450 . + . mRNA SPCC24B10.18 ; colour "10" ;
chromosome3 GeneDB CDS 932504 932638 . + . mRNA SPCC24B10.18 ; colour "10" ;
chromosome3 GeneDB misc_feature 932113 932118 . + . misc_feature unknown_816 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 932113 932394 . + . intron SPCC24B10.18 ; systematic_id "SPCC24B10.18" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 932384 932394 . + . misc_feature unknown_817 ; note "ttgacttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 932451 932456 . + . misc_feature unknown_818 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 932451 932503 . + . intron SPCC24B10.18 ; systematic_id "SPCC24B10.18" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 932489 932503 . + . misc_feature unknown_819 ; note "ctaatatctttaaag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 932639 932775 . + . mRNA SPCC24B10.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.18" ; systematic_id "SPCC24B10.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 932830 932962 . - . mRNA SPCC24B10.19c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.19c" ; systematic_id "SPCC24B10.19c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 932963 934446 . - . mRNA SPCC24B10.19c ; db_xref "SPD:23/23H10" ; systematic_id "SPCC24B10.19c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC24B10.19c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 932963 934284 . - . mRNA SPCC24B10.19c ; colour "8" ;
chromosome3 GeneDB CDS 934401 934446 . - . mRNA SPCC24B10.19c ; colour "8" ;
chromosome3 GeneDB misc_feature 934285 934300 . - . misc_feature unknown_820 ; note "ctaaccgttaatgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 934395 934400 . - . misc_feature unknown_821 ; note "gtataa, splice donor sequence" ;
chromosome3 GeneDB misc_RNA 934572 935182 . + . misc_RNA SPNCRNA.476 ; db_xref "PMID:18488015" ; synonym "SPNG2250" ; systematic_id "SPNCRNA.476" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 937803 938567 . + . mRNA SPCC24B10.20 ; db_xref "SPD:09/09E03" ; systematic_id "SPCC24B10.20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL071W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827" ; colour "10" ; gene "SPCC24B10.20" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB CDS 937803 938567 . + . mRNA SPCC24B10.20 ; colour "10" ;
chromosome3 GeneDB 5'-UTR 939926 939944 . + . mRNA SPCC24B10.21 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.21" ; systematic_id "SPCC24B10.21" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 939945 940694 . + . mRNA SPCC24B10.21 ; systematic_id "SPCC24B10.21" ; colour "2" ; gene "tpi1 ||| tpi ||| SPCC24B10.21" ; Alias "tpi1" ; db_xref "SPD:09/09C02" ; synonym "tpi" ; GO "GO:0005829; cytosol
GO:0004807; triose-phosphate isomerase activity
GO:0006094; gluconeogenesis
GO:0006096; glycolysis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hemolytic anemia; date=20060920 ||| term=orthologous to S. cerevisiae YDR050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tpi1" ; product "triosephosphate isomerase" ; EC_number "5.3.1.1" ;
chromosome3 GeneDB CDS 939945 940694 . + . mRNA SPCC24B10.21 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 940695 940750 . + . mRNA SPCC24B10.21 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.21" ; systematic_id "SPCC24B10.21" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 941416 944472 . + . mRNA SPCC24B10.22 ; systematic_id "SPCC24B10.22" ; colour "2" ; gene "pog1 ||| SPCC24B10.22 ||| SPCPB16A4.01" ; Alias "pog1" ; db_xref "SPD:49/49F06" ; synonym "SPCPB16A4.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR330C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17868468; date=20090107 ||| term=phenotype, adaptive expression responses; qualifier=deletion; cv=phenotype; db_xref=PMID:17868468; date=20090107 ||| term=phenotype, mononucleate; qualifier=low_penetrance|deletion; cv=phenotype; db_xref=PMID:17868468; date=20090107 ||| term=phenotype, septation defects; qualifier=low_penetrance|deletion; cv=phenotype; db_xref=PMID:17868468; date=20090107 ||| term=phenotype, cell morphology, bottle/skittle; qualifier=low_penetrance|deletion|weak; cv=phenotype; db_xref=PMID:17868468; date=20090107 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17868468; date=20090107 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human POLG ortholog; date=20100301 ||| term=disease associated, mitochondrial disorders; date=20100301" ; GO "GO:0003677; DNA binding
GO:0003887; DNA-directed DNA polymerase activity
GO:0006264; mitochondrial DNA replication
GO:0000002; mitochondrial genome maintenance
GO:0007005; mitochondrion organization" ; primary_name "pog1" ; product "mitochondrial DNA polymerase" ; EC_number "2.7.7.7" ;
chromosome3 GeneDB CDS 941416 944472 . + . mRNA SPCC24B10.22 ; colour "2" ;
chromosome3 GeneDB misc_feature 942546 942664 . + . misc_feature unknown_822 ; note "595 (+1) 40633 40751 SPCC24B10 S. pombe chromosome 3" ;
chromosome3 GeneDB 3'-UTR 944473 944601 . + . mRNA SPCC24B10.22 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC24B10.22" ; systematic_id "SPCC24B10.22" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 944545 944871 . - . mRNA SPCPB16A4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB16A4.02c" ; systematic_id "SPCPB16A4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 944872 946260 . - . mRNA SPCPB16A4.02c ; db_xref "SPD:50/50F08" ; systematic_id "SPCPB16A4.02c" ; colour "10" ; GO "GO:0035091; phosphoinositide binding
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YBR129C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCPB16A4.02c" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 944872 945632 . - . mRNA SPCPB16A4.02c ; colour "10" ;
chromosome3 GeneDB CDS 945671 945713 . - . mRNA SPCPB16A4.02c ; colour "10" ;
chromosome3 GeneDB CDS 945797 945859 . - . mRNA SPCPB16A4.02c ; colour "10" ;
chromosome3 GeneDB CDS 946141 946260 . - . mRNA SPCPB16A4.02c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 946259 946360 . - . mRNA SPCPB16A4.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB16A4.02c" ; systematic_id "SPCPB16A4.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 947262 947335 . + . tRNA SPCTRNAASN.05 ; systematic_id "SPCTRNAASN.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033449; GTT codon-amino acid adaptor activity" ; gene "SPCTRNAASN.05" ; product "tRNA Asparagine" ; note "tRNA Asn anticodon GTT, Cove score 86.64" ;
chromosome3 GeneDB 3'-UTR 947735 947831 . - . mRNA SPCPB16A4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB16A4.03c" ; systematic_id "SPCPB16A4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 947832 949589 . - . mRNA SPCPB16A4.03c ; systematic_id "SPCPB16A4.03c" ; colour "2" ; gene "ade10 ||| SPCPB16A4.03c" ; db_xref "SPD:49/49C01" ; Alias "ade10" ; GO "GO:0003937; IMP cyclohydrolase activity
GO:0004643; phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0006188; IMP biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR028C and YMR120C; date=19700101 ||| term=catalytic activity, bifunctional enzyme; cv=cat_act; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human ATIC ortholog; date=20100217" ; primary_name "ade10" ; product "IMPcyclohydrolase/phosphoribosylaminoimidazolecarboxamideformyltransferase" ; EC_number "3.5.4.10 ||| 2.1.2.3" ;
chromosome3 GeneDB CDS 947832 949589 . - . mRNA SPCPB16A4.03c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 949588 949606 . - . mRNA SPCPB16A4.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB16A4.03c" ; systematic_id "SPCPB16A4.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 949754 950750 . + . misc_RNA SPNCRNA.477 ; db_xref "PMID:18488015" ; synonym "SPNG2259-60" ; systematic_id "SPNCRNA.477" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 951193 952204 . - . mRNA SPCPB16A4.04c ; systematic_id "SPCPB16A4.04c" ; colour "7" ; gene "SPCPB16A4.04c ||| trm8" ; Alias "trm8" ; db_xref "SPD:41/41H09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL201W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008176; tRNA (guanine-N7-)-methyltransferase activity
GO:0030488; tRNA methylation
GO:0005634; nucleus
GO:0043234; protein complex
GO:0000049; tRNA binding" ; primary_name "trm8" ; product "tRNA (guanine-N7-)-methyltransferase catalytic subunit Trm8 (predicted)" ; EC_number "2.1.1.33" ;
chromosome3 GeneDB CDS 951193 951841 . - . mRNA SPCPB16A4.04c ; colour "7" ;
chromosome3 GeneDB CDS 951975 952033 . - . mRNA SPCPB16A4.04c ; colour "7" ;
chromosome3 GeneDB CDS 952091 952204 . - . mRNA SPCPB16A4.04c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 952203 952247 . - . mRNA SPCPB16A4.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB16A4.04c" ; systematic_id "SPCPB16A4.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 952577 952675 . - . mRNA SPCPB16A4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB16A4.05c" ; systematic_id "SPCPB16A4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 952676 953536 . - . mRNA SPCPB16A4.05c ; db_xref "SPD:41/41G01" ; systematic_id "SPCPB16A4.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0019627; urea metabolic process" ; colour "7" ; gene "SPCPB16A4.05c" ; product "urease accessory protein UREG (predicted)" ;
chromosome3 GeneDB CDS 952676 953536 . - . mRNA SPCPB16A4.05c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 953535 953786 . - . mRNA SPCPB16A4.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB16A4.05c" ; systematic_id "SPCPB16A4.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 953976 954331 . + . misc_RNA SPNCRNA.33 ; Alias "prl33" ; db_xref "PMID:12597277 ||| EMBL:AB084845" ; systematic_id "SPNCRNA.33" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl33" ; gene "prl33 ||| SPNCRNA.33" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB LTR 954537 954860 . + . LTR unknown_823 ; note "721 (+1) 26 358 Tf1-type LTR" ;
chromosome3 GeneDB misc_RNA 955413 955760 . + . misc_RNA SPNCRNA.44 ; Alias "prl44" ; db_xref "EMBL:AB084856 ||| PMID:12597277" ; systematic_id "SPNCRNA.44" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl44" ; gene "prl44 ||| SPNCRNA.44" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB CDS_parts 956424 956804 . - . mRNA SPCPB16A4.06c ; db_xref "SPD:41/41A04" ; systematic_id "SPCPB16A4.06c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPCPB16A4.06c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 956424 956804 . - . mRNA SPCPB16A4.06c ; colour "8" ;
chromosome3 GeneDB misc_RNA 957729 958657 . + . misc_RNA SPNCRNA.478 ; db_xref "PMID:18488015" ; synonym "SPNG2263" ; systematic_id "SPNCRNA.478" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB LTR 958713 958931 . - . LTR unknown_824 ; note "293 (-1) 130 349 Tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 959281 963972 . - . mRNA SPCC1742.01 ; systematic_id "SPCC1742.01" ; colour "8" ; gene "SPCPB16A4.07c ||| SPCC1742.01 ||| SPCC1795.13" ; Alias "SPCPB16A4.07c" ; db_xref "SPD:50/50A12" ; synonym "SPCC1795.13 ||| SPCPB16A4.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=protein sequence feature, repeat containing; date=20100731" ; GO "GO:0009986; cell surface" ; primary_name "SPCPB16A4.07c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 959281 963972 . - . mRNA SPCC1742.01 ; colour "8" ;
chromosome3 GeneDB misc_feature 962633 962870 . + . misc_feature unknown_825 ; note "3476 (+1) 1 706 SPCC1742 S. pombe chromosome 3; REPETATIVE REGION THIS MAY NOT BE THE TRUE OVERLAP" ;
chromosome3 GeneDB misc_feature 963335 963432 . + . misc_feature unknown_826 ; note "nominal overlap with cosmid SPCC1795, EM:AL022598 S. pombe chromosome 3" ;
chromosome3 GeneDB conflict 963343 963343 . + . conflict unknown_827 ; citation "[1]" ; note "discrepancy G->A to allow contiguation" ;
chromosome3 GeneDB misc_feature 963973 972823 . + . misc_feature unknown_828 ; note "low complexity gene free region" ;
chromosome3 GeneDB misc_RNA 968168 968477 . - . misc_RNA SPNCRNA.06 ; systematic_id "SPNCRNA.06" ; gene "prl06 ||| prl6 ||| SPNCRNA.06" ; db_xref "PMID:12597277 ||| EMBL:AB084818" ; Alias "prl6" ; synonym "prl06" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412 ||| term=genome organization, low complexity gene free region; qualifier=predicted; cv=genome_org; date=20050412" ; primary_name "prl6" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB CDS_parts 972824 973162 . + . mRNA SPCC1795.12c ; db_xref "SPD:02/02A05" ; systematic_id "SPCC1795.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPCC1795.12c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 972824 973162 . + . mRNA SPCC1795.12c ; colour "8" ;
chromosome3 GeneDB 3'-UTR 973163 973972 . + . mRNA SPCC1795.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.12c" ; systematic_id "SPCC1795.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 974081 974760 . - . mRNA SPCC1795.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.11" ; systematic_id "SPCC1795.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 974761 976671 . - . mRNA SPCC1795.11 ; systematic_id "SPCC1795.11" ; colour "2" ; gene "sum3 ||| ded1 ||| slh3 ||| moc2 ||| SPCC1795.11" ; Alias "sum3" ; db_xref "SPD:26/26F10" ; synonym "ded1 ||| slh3 ||| moc2" ; GO "GO:0005737; cytoplasm
GO:0004004; ATP-dependent RNA helicase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031137; regulation of conjugation with cellular fusion
GO:0006417; regulation of translation
GO:0071470; cellular response to osmotic stress" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9832516; date=19700101 ||| term=orthologous to S. cerevisiae YOR204W and YPL119C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Suppressor of Uncontrolled Mitosis; cv=name_description; date=20091004 ||| term=name description, Multicopy suppressor of Overexpressed Cyr1; cv=name_description; date=20091004 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sum3" ; product "ATP-dependent RNA helicase Sum3" ;
chromosome3 GeneDB CDS 974761 976671 . - . mRNA SPCC1795.11 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 976670 976722 . - . mRNA SPCC1795.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.11" ; systematic_id "SPCC1795.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 977216 977440 . + . mRNA SPCC1795.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.10c" ; systematic_id "SPCC1795.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 977441 978124 . + . mRNA SPCC1795.10c ; db_xref "SPD:07/07H11" ; systematic_id "SPCC1795.10c" ; colour "7" ; GO "GO:0030134; ER to Golgi transport vesicle
; cytoplasm
GO:0030173; integral to Golgi membrane
GO:0030176; integral to endoplasmic reticulum membrane
GO:0031965; nuclear membrane
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0045053; protein retention in Golgi" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR181W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1795.10c" ; product "Sed5 Vesicle Protein Svp26 (predicted)" ;
chromosome3 GeneDB CDS 977441 978124 . + . mRNA SPCC1795.10c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 978125 978482 . + . mRNA SPCC1795.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.10c" ; systematic_id "SPCC1795.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 978613 980178 . - . mRNA SPCC1795.09 ; systematic_id "SPCC1795.09" ; colour "2" ; gene "yps1 ||| SPCC1795.09" ; Alias "yps1" ; db_xref "SPD:25/25C08" ; GO "GO:0005618; cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=orthologous to S. cerevisiae YLR120C and YDR144C and YLR121C and YIR039C and YDR349C; date=19700101 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=modification, proteolytic cleavage; cv=pt_mod; qualifier=predicted; residue=SER17|ARG45; db_xref=PMID:11115118; date=20091119 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=protein sequence feature, cleavage site; cv=sequence_feature; qualifier=predicted; residue=SER17|ARG45; db_xref=PMID:11115118; date=20091119 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "yps1" ; product "aspartic protease, yapsin Yps1" ;
chromosome3 GeneDB CDS 978613 980178 . - . mRNA SPCC1795.09 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 981011 981119 . + . mRNA SPCC1795.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.08c" ; systematic_id "SPCC1795.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 981120 984243 . + . mRNA SPCC1795.08c ; systematic_id "SPCC1795.08c" ; colour "2" ; gene "SPCC1795.08c ||| vid21" ; Alias "vid21" ; db_xref "SPD:47/47H07" ; GO "GO:0003677; DNA binding
GO:0035267; NuA4 histone acetyltransferase complex
GO:0006281; DNA repair
GO:0016573; histone acetylation
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=Myb family; date=19700101 ||| term=SANT subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YDR359C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "vid21" ; product "NuA4 histone acetyltransferase complex subunit Vid21" ;
chromosome3 GeneDB CDS 981120 981128 . + . mRNA SPCC1795.08c ; colour "2" ;
chromosome3 GeneDB CDS 981211 981491 . + . mRNA SPCC1795.08c ; colour "2" ;
chromosome3 GeneDB CDS 981576 984243 . + . mRNA SPCC1795.08c ; colour "2" ;
chromosome3 GeneDB misc_feature 981129 981134 . + . misc_feature unknown_829 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 981190 981210 . + . misc_feature unknown_830 ; colour "6" ; note "ttaatatttttaattaaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 981492 981497 . + . misc_feature unknown_831 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 981560 981575 . + . misc_feature unknown_832 ; colour "6" ; note "ttaatctttcagctag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 984244 984422 . + . mRNA SPCC1795.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.08c" ; systematic_id "SPCC1795.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 984466 984991 . - . mRNA SPCC1795.07 ; db_xref "SPD:42/42C03" ; systematic_id "SPCC1795.07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation" ; gene "SPCC1795.07" ; product "mitochondrial ribosomal protein subunit S37 (predicted)" ;
chromosome3 GeneDB CDS 984466 984640 . - . mRNA SPCC1795.07 ; colour "7" ;
chromosome3 GeneDB CDS 984711 984991 . - . mRNA SPCC1795.07 ; colour "7" ;
chromosome3 GeneDB misc_feature 984641 984656 . - . misc_feature unknown_833 ; colour "6" ; note "ctaatgaatatttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 984705 984710 . - . misc_feature unknown_834 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 984990 985137 . - . mRNA SPCC1795.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.07" ; systematic_id "SPCC1795.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB conflict 985872 985902 . - . conflict unknown_835 ; colour "6" ; citation "[1]" ; note "run of 32 A's in c1795, but 31 A's in c895" ;
chromosome3 GeneDB CDS_parts 986079 986684 . - . mRNA SPCC1795.06 ; systematic_id "SPCC1795.06" ; colour "2" ; gene "map2 ||| SPCC1795.06" ; Alias "map2" ; db_xref "SPD:06/06G06" ; GO "GO:0032005; signal transduction during conjugation with cellular fusion
GO:0009986; cell surface
GO:0005576; extracellular region
GO:0000772; mating pheromone activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303" ; primary_name "map2" ; product "P-factor pheromone Map2" ;
chromosome3 GeneDB CDS 986079 986684 . - . mRNA SPCC1795.06 ; colour "2" ;
chromosome3 GeneDB CDS_parts 988847 989422 . + . mRNA SPCC1795.05c ; db_xref "SPD:06/06B11" ; systematic_id "SPCC1795.05c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hemolytic anemia; date=20060920 ||| term=orthologous to S. cerevisiae YKL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009041; uridylate kinase activity
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPCC1795.05c" ; product "uridylate kinase (predicted)" ; EC_number "2.7.4.-" ;
chromosome3 GeneDB CDS 988847 989422 . + . mRNA SPCC1795.05c ; colour "7" ;
chromosome3 GeneDB misc_RNA 989942 990834 . - . misc_RNA SPNCRNA.128 ; Alias "rrk1" ; db_xref "EMBL:X04013 ||| RFAM:RF00009" ; systematic_id "SPNCRNA.128" ; controlled_curation "term=orthologous to S. cerevisiae S000006490; date=20070206" ; GO "GO:0004526; ribonuclease P activity
GO:0006364; tRNA processing
GO:0005655; nucleolar ribonuclease P complex" ; primary_name "rrk1" ; product "RNase P K-RNA" ;
chromosome3 GeneDB 5'-UTR 990692 990712 . + . mRNA SPCC1795.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.04c" ; systematic_id "SPCC1795.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 990713 991628 . + . mRNA SPCC1795.04c ; systematic_id "SPCC1795.04c" ; colour "7" ; gene "pre10 ||| SPCC1795.04c" ; Alias "pre10" ; db_xref "SPD:12/12G02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR362C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; primary_name "pre10" ; product "20S proteasome component alpha 7, Pre10 (predicted)" ; EC_number "3.4.25.1" ;
chromosome3 GeneDB CDS 990713 990715 . + . mRNA SPCC1795.04c ; colour "7" ;
chromosome3 GeneDB CDS 990755 990852 . + . mRNA SPCC1795.04c ; colour "7" ;
chromosome3 GeneDB CDS 990902 991384 . + . mRNA SPCC1795.04c ; colour "7" ;
chromosome3 GeneDB CDS 991451 991628 . + . mRNA SPCC1795.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 990716 990721 . + . misc_feature unknown_836 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 990744 990754 . + . misc_feature unknown_837 ; colour "6" ; note "ttaacaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 990853 990858 . + . misc_feature unknown_838 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB intron 990853 990901 . + . intron SPCC1795.04c ; systematic_id "SPCC1795.04c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 990886 990901 . + . misc_feature unknown_839 ; colour "6" ; note "ttaacattgtatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 991385 991390 . + . misc_feature unknown_840 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 991429 991450 . + . misc_feature unknown_841 ; colour "6" ; note "ctaataattcactcttttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 991629 991955 . + . mRNA SPCC1795.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.04c" ; systematic_id "SPCC1795.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB snoRNA 992436 992602 . + . snoRNA SPSNORNA.37 ; Alias "snR10" ; db_xref "EMBL:AJ632002 ||| PMID:15716270" ; systematic_id "SPSNORNA.37" ; controlled_curation "term=orthologous to S. cerevisiae snR10; date=20070104" ; primary_name "snR10" ; product "small nucleolar RNA snR10" ;
chromosome3 GeneDB 3'-UTR 993001 993567 . - . mRNA SPCC1795.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.03" ; systematic_id "SPCC1795.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 993568 994804 . - . mRNA SPCC1795.03 ; systematic_id "SPCC1795.03" ; colour "2" ; gene "gms1 ||| SPCC1795.03" ; Alias "gms1" ; db_xref "SPD:19/19G06" ; GO "GO:0000139; Golgi membrane
GO:0005459; UDP-galactose transmembrane transporter activity
GO:0072334; UDP-galactose transmembrane transport
GO:0000747; conjugation with cellular fusion
GO:0051070; galactomannan biosynthesis
GO:0042125; protein amino acid galactosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8782411; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gms1" ; product "UDP-galactose transporter Gms1" ;
chromosome3 GeneDB CDS 993568 994533 . - . mRNA SPCC1795.03 ; colour "2" ;
chromosome3 GeneDB CDS 994709 994804 . - . mRNA SPCC1795.03 ; colour "2" ;
chromosome3 GeneDB misc_feature 994534 994548 . - . misc_feature unknown_842 ; colour "6" ; note "ctaatggttaaatag, splice branch and acceptor" ;
chromosome3 GeneDB intron 994534 994708 . - . intron SPCC1795.03 ; systematic_id "SPCC1795.03" ; note "confirmed by est" ;
chromosome3 GeneDB misc_feature 994703 994708 . - . misc_feature unknown_843 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 994803 994981 . - . mRNA SPCC1795.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.03" ; systematic_id "SPCC1795.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 995257 995521 . + . mRNA SPCC1795.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.02c" ; systematic_id "SPCC1795.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 995522 996816 . + . mRNA SPCC1795.02c ; systematic_id "SPCC1795.02c" ; colour "7" ; gene "SPCC1795.02c ||| SPCC895.01 ||| vcx1" ; Alias "vcx1" ; db_xref "SPD:22/22E03" ; synonym "SPCC895.01" ; GO "GO:0000324; vacuole (sensu Fungi)
GO:0006816; calcium ion transport
GO:0015085; calcium ion transporter activity
GO:0006874; cellular calcium ion homeostasis
GO:0070588; transmembrane calcium ion transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDL128W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "vcx1" ; product "CaCA proton/calcium exchanger (predicted)" ;
chromosome3 GeneDB CDS 995522 995886 . + . mRNA SPCC1795.02c ; colour "7" ;
chromosome3 GeneDB CDS 995943 996816 . + . mRNA SPCC1795.02c ; colour "7" ;
chromosome3 GeneDB misc_feature 995574 997898 . + . misc_feature unknown_844 ; note "nominal overlap with cosmid SPCC895 and cosmid SPCC1795" ;
chromosome3 GeneDB misc_feature 995887 995892 . + . misc_feature unknown_845 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 995925 995942 . + . misc_feature unknown_846 ; colour "6" ; note "ttaacacgttgtgtacag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 996817 997125 . + . mRNA SPCC1795.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.02c" ; systematic_id "SPCC1795.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 997511 997687 . + . mRNA SPCC1795.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1795.01c" ; systematic_id "SPCC1795.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 997688 998620 . + . mRNA SPCC1795.01c ; systematic_id "SPCC1795.01c" ; colour "2" ; db_xref "SPD:13/13A10" ; Alias "mad3" ; synonym "SPCC895.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11909965; date=19700101 ||| term=orthologous to S. cerevisiae YJL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human BUB1 and BUB1B ortholog; date=20100217 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0033597; mitotic checkpoint complex
GO:0010997; anaphase-promoting complex binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0060565; inhibition of anaphase promoting complex activity during mitotic cell cycle
GO:0007094; mitotic spindle checkpoint
GO:0007094; mitotic spindle checkpoint
GO:0045841; negative regulation of mitotic metaphase/anaphase transition
GO:0051444; negative regulation of ubiquitin ligase activity" ; primary_name "mad3" ; product "mitotic spindle checkpoint protein Mad3" ;
chromosome3 GeneDB CDS 997688 998620 . + . mRNA SPCC1795.01c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 998621 998839 . + . mRNA SPCC1795.01c ; ID "SPCC1795.01c" ; systematic_id "SPCC1795.01c" ; note "mRNA from AU008148" ;
chromosome3 GeneDB CDS_parts 998942 1000168 . - . mRNA SPCC895.03c ; db_xref "SPD:19/19E08" ; systematic_id "SPCC895.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL169W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006400; tRNA modification" ; gene "SPCC895.03c" ; product "SUA5/yciO/yrdC family protein Sua5 (predicted)" ;
chromosome3 GeneDB CDS 998942 1000168 . - . mRNA SPCC895.03c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1000167 1000316 . - . mRNA SPCC895.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.03c" ; systematic_id "SPCC895.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1000974 1001019 . - . mRNA SPCC895.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.04c" ; systematic_id "SPCC895.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1001020 1002264 . - . mRNA SPCC895.04c ; systematic_id "SPCC895.04c" ; colour "7" ; gene "ufe1 ||| SPCC895.04c" ; Alias "ufe1" ; db_xref "SPD:19/19H06" ; GO "GO:0005484; SNAP receptor activity
GO:0016192; vesicle-mediated transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR075W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ufe1" ; product "SNARE Ufe1 (predicted)" ;
chromosome3 GeneDB CDS 1001020 1001624 . - . mRNA SPCC895.04c ; colour "7" ;
chromosome3 GeneDB CDS 1001713 1001947 . - . mRNA SPCC895.04c ; colour "7" ;
chromosome3 GeneDB CDS 1002145 1002264 . - . mRNA SPCC895.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 1001625 1001640 . - . misc_feature unknown_847 ; colour "6" ; note "ctaattgcatgagtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1001707 1001712 . - . misc_feature unknown_848 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1001948 1001960 . - . misc_feature unknown_849 ; colour "6" ; note "ctaacgttagcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1002139 1002144 . - . misc_feature unknown_850 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1002263 1002296 . - . mRNA SPCC895.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.04c" ; systematic_id "SPCC895.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1002791 1003129 . + . mRNA SPCC895.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.05" ; systematic_id "SPCC895.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1003130 1007515 . + . mRNA SPCC895.05 ; systematic_id "SPCC895.05" ; colour "2" ; gene "for3 ||| SPCC895.05" ; Alias "for3" ; db_xref "SPD:30/30G10" ; GO "GO:0003779; actin binding
GO:0005515; protein binding
GO:0007163; establishment and/or maintenance of cell polarity
GO:0051017; actin cable formation
GO:0005515; protein binding
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0051285; cell cortex of cell tip
GO:0005515; protein binding
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL271C and YIL159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706" ; primary_name "for3" ; product "formin For3" ;
chromosome3 GeneDB CDS 1003130 1007515 . + . mRNA SPCC895.05 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1007516 1008125 . + . mRNA SPCC895.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.05" ; systematic_id "SPCC895.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1008455 1008472 . + . mRNA SPCC895.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.06" ; systematic_id "SPCC895.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1008473 1010876 . + . mRNA SPCC895.06 ; db_xref "SPD:28/28F05" ; systematic_id "SPCC895.06" ; colour "7" ; GO "GO:0006400; tRNA modification
GO:0033588; Elongator holoenzyme complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR200C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC895.06" ; product "elongator complex subunit Elp2 (predicted)" ;
chromosome3 GeneDB CDS 1008473 1008589 . + . mRNA SPCC895.06 ; colour "7" ;
chromosome3 GeneDB CDS 1008669 1010498 . + . mRNA SPCC895.06 ; colour "7" ;
chromosome3 GeneDB CDS 1010541 1010876 . + . mRNA SPCC895.06 ; colour "7" ;
chromosome3 GeneDB misc_feature 1008590 1008595 . + . misc_feature unknown_851 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1008654 1008668 . + . misc_feature unknown_852 ; colour "6" ; note "ttaaccaataattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1010499 1010504 . + . misc_feature unknown_853 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB intron 1010499 1010540 . + . intron SPCC895.06 ; systematic_id "SPCC895.06" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1010529 1010540 . + . misc_feature unknown_854 ; colour "6" ; note "ctaactatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1010877 1010986 . + . mRNA SPCC895.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.06" ; systematic_id "SPCC895.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1011480 1011761 . + . mRNA SPCC895.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.07" ; systematic_id "SPCC895.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1011762 1014191 . + . mRNA SPCC895.07 ; systematic_id "SPCC895.07" ; colour "2" ; gene "alp14 ||| mtc1 ||| SPCC895.07" ; Alias "alp14" ; db_xref "SPD:28/28G03" ; synonym "mtc1" ; GO "GO:0005816; spindle pole body
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0000778; condensed chromosome kinetochore
GO:0007094; mitotic spindle checkpoint
GO:0007163; establishment and/or maintenance of cell polarity
GO:0008017; microtubule binding
GO:0007017; microtubule-based process
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0090307; spindle assembly involved in mitosis
GO:0005515; protein binding
GO:0070850; TACC/TOG complex
GO:0005634; nucleus
GO:0000226; microtubule cytoskeleton organization
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=MAP215/Dis1 family; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:19606211; cv=localization; date=20090817 ||| term=phenotype, sensitive to high temperature; cv=phenotype; db_xref=PMID:19696784; date=20091127 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:19696784; date=20091127 ||| term=localization, undergoes nucleocytoplasmic shuttling; qualifier=during_mitosis; db_xref=PMID:19696784; cv=localization; date=20090817 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "alp14" ; product "TOG ortholog Alp14" ;
chromosome3 GeneDB CDS 1011762 1014191 . + . mRNA SPCC895.07 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1014192 1014287 . + . mRNA SPCC895.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.07" ; systematic_id "SPCC895.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1014396 1014647 . - . mRNA SPCC895.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.08c" ; systematic_id "SPCC895.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1014648 1016120 . - . mRNA SPCC895.08c ; db_xref "SPD:23/23G05" ; systematic_id "SPCC895.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to A. fumigatus Afu2g02260; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC895.08c" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 1014648 1016120 . - . mRNA SPCC895.08c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 1016119 1016211 . - . mRNA SPCC895.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.08c" ; systematic_id "SPCC895.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1016871 1017093 . - . mRNA SPCC895.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC895.09c" ; systematic_id "SPCC895.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1017094 1021291 . - . mRNA SPCC895.09c ; systematic_id "SPCC895.09c" ; colour "10" ; gene "ucp12 ||| SPCC895.09c" ; Alias "ucp12" ; db_xref "SPD:30/30G02" ; GO "GO:0043130; ubiquitin binding
GO:0004004; ATP-dependent RNA helicase
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RWD domain; date=19700101 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR419W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human DHX57 ortholog; date=20100728" ; primary_name "ucp12" ; product "ATP-dependent RNA helicase Ucp12 (predicted)" ;
chromosome3 GeneDB CDS 1017094 1018002 . - . mRNA SPCC895.09c ; colour "10" ;
chromosome3 GeneDB CDS 1018046 1020066 . - . mRNA SPCC895.09c ; colour "10" ;
chromosome3 GeneDB CDS 1020108 1020708 . - . mRNA SPCC895.09c ; colour "10" ;
chromosome3 GeneDB CDS 1020768 1020956 . - . mRNA SPCC895.09c ; colour "10" ;
chromosome3 GeneDB CDS 1021028 1021291 . - . mRNA SPCC895.09c ; colour "10" ;
chromosome3 GeneDB misc_feature 1018003 1018017 . - . misc_feature unknown_855 ; colour "6" ; note "ctaatataattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1018040 1018045 . - . misc_feature unknown_856 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1020067 1020080 . - . misc_feature unknown_857 ; colour "6" ; note "ctaactattaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1020102 1020107 . - . misc_feature unknown_858 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1020709 1020722 . - . misc_feature unknown_859 ; colour "6" ; note "ttaatttctaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1020762 1020767 . - . misc_feature unknown_860 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1020957 1020974 . - . misc_feature unknown_861 ; colour "6" ; note "ctaaaatcttctaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1021022 1021027 . - . misc_feature unknown_862 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1021502 1022026 . + . misc_feature unknown_863 ; note "nominal overlap with cosmid SPCC825 and cosmid SPCC895" ;
chromosome3 GeneDB 5'-UTR 1022480 1022680 . + . mRNA SPCC825.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC825.01" ; systematic_id "SPCC825.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1022681 1025149 . + . mRNA SPCC825.01 ; db_xref "SPD:28/28H04" ; systematic_id "SPCC825.01" ; colour "7" ; GO "GO:0016887; ATPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=human ABCF1 ortholog; date=20080313 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20110106" ; gene "SPCC825.01" ; product "ribosome biogenesis ATPase, Arb family ABCF1- like (predicted)" ;
chromosome3 GeneDB CDS 1022681 1025149 . + . mRNA SPCC825.01 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1025150 1025286 . + . mRNA SPCC825.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC825.01" ; systematic_id "SPCC825.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1025552 1027438 . + . mRNA SPCC825.02 ; db_xref "SPD:26/26D11" ; systematic_id "SPCC825.02" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0004573; mannosyl-oligosaccharide glucosidase activity
GO:0006487; protein amino acid N-linked glycosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, polycystic liver disease; date=19700101 ||| term=orthologous to S. cerevisiae YDR221W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPCC825.02" ; product "glucosidase II Gtb1 (predicted)" ;
chromosome3 GeneDB CDS 1025552 1025651 . + . mRNA SPCC825.02 ; colour "7" ;
chromosome3 GeneDB CDS 1025701 1025784 . + . mRNA SPCC825.02 ; colour "7" ;
chromosome3 GeneDB CDS 1025841 1025879 . + . mRNA SPCC825.02 ; colour "7" ;
chromosome3 GeneDB CDS 1025918 1026574 . + . mRNA SPCC825.02 ; colour "7" ;
chromosome3 GeneDB CDS 1026702 1026839 . + . mRNA SPCC825.02 ; colour "7" ;
chromosome3 GeneDB CDS 1026892 1027111 . + . mRNA SPCC825.02 ; colour "7" ;
chromosome3 GeneDB CDS 1027156 1027438 . + . mRNA SPCC825.02 ; colour "7" ;
chromosome3 GeneDB misc_feature 1025652 1025657 . + . misc_feature unknown_864 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 1025652 1025700 . + . intron SPCC825.02 ; systematic_id "SPCC825.02" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1025785 1025790 . + . misc_feature unknown_865 ; colour "6" ; note "gtagga, splice donor sequence" ;
chromosome3 GeneDB intron 1025785 1025840 . + . intron SPCC825.02 ; systematic_id "SPCC825.02" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1025827 1025840 . + . misc_feature unknown_866 ; colour "6" ; note "ctaacacattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1025880 1025885 . + . misc_feature unknown_867 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome3 GeneDB intron 1025880 1025917 . + . intron SPCC825.02 ; systematic_id "SPCC825.02" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1025905 1025917 . + . misc_feature unknown_868 ; colour "6" ; note "ctaatccacttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1026575 1026580 . + . misc_feature unknown_869 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB intron 1026617 1026701 . + . intron SPCC825.02 ; systematic_id "SPCC825.02" ; note "intron confirmed from EST" ;
chromosome3 GeneDB misc_feature 1026685 1026701 . + . misc_feature unknown_870 ; colour "6" ; note "ctgactttgagaattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1026840 1026845 . + . misc_feature unknown_871 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 1026840 1026891 . + . intron SPCC825.02 ; systematic_id "SPCC825.02" ; note "Intron confirmed by est" ;
chromosome3 GeneDB misc_feature 1026879 1026891 . + . misc_feature unknown_872 ; colour "6" ; note "ctaattcattaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1027112 1027117 . + . misc_feature unknown_873 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB intron 1027112 1027155 . + . intron SPCC825.02 ; systematic_id "SPCC825.02" ; note "intron confirmed from EST" ;
chromosome3 GeneDB misc_feature 1027143 1027155 . + . misc_feature unknown_874 ; colour "6" ; note "ctaacaactctag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1027439 1027596 . + . mRNA SPCC825.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC825.02" ; systematic_id "SPCC825.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1027542 1028291 . - . mRNA SPCC825.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC825.03c" ; systematic_id "SPCC825.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1028292 1029146 . - . mRNA SPCC825.03c ; systematic_id "SPCC825.03c" ; colour "2" ; gene "psy1 ||| sso1 ||| SPCC825.03c" ; Alias "psy1" ; db_xref "SPD:11/11C10" ; synonym "sso1" ; GO "GO:0005484; SNAP receptor activity
GO:0030437; sporulation (sensu Fungi)
GO:0005628; prospore membrane
GO:0005886; plasma membrane
GO:0016192; vesicle-mediated transport
GO:0032120; ascospore-type prospore membrane assembly" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11739793; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL232W and YMR183C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "psy1" ; product "SNARE Psy1" ;
chromosome3 GeneDB CDS 1028292 1029146 . - . mRNA SPCC825.03c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1029145 1029192 . - . mRNA SPCC825.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC825.03c" ; systematic_id "SPCC825.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1030256 1030870 . - . mRNA SPCC825.04c ; systematic_id "SPCC825.04c" ; colour "7" ; gene "SPCC825.04c" ; Alias "naa40" ; db_xref "SPD:06/06H07" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004402; histone acetyltransferase activity
GO:0016573; histone acetylation
GO:0017196; N-terminal peptidyl-methionine acetylation
GO:0004596; peptide alpha-N-acetyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR069W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; primary_name "naa40" ; product "histone N-acetyltransferase Naa40 (predicted)" ;
chromosome3 GeneDB CDS 1030256 1030870 . - . mRNA SPCC825.04c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1031060 1031433 . - . mRNA SPCC825.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC825.05c" ; systematic_id "SPCC825.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1031434 1032489 . - . mRNA SPCC825.05c ; db_xref "SPD:16/16B08" ; systematic_id "SPCC825.05c" ; colour "7" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC825.05c" ; product "splicing coactivator SRRM1 (predicted)" ;
chromosome3 GeneDB CDS 1031434 1031901 . - . mRNA SPCC825.05c ; colour "7" ;
chromosome3 GeneDB CDS 1031940 1032269 . - . mRNA SPCC825.05c ; colour "7" ;
chromosome3 GeneDB CDS 1032329 1032418 . - . mRNA SPCC825.05c ; colour "7" ;
chromosome3 GeneDB CDS 1032472 1032489 . - . mRNA SPCC825.05c ; colour "7" ;
chromosome3 GeneDB misc_feature 1031902 1031915 . - . misc_feature unknown_875 ; colour "6" ; note "ctgacatttaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1031934 1031939 . - . misc_feature unknown_876 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1032270 1032282 . - . misc_feature unknown_877 ; colour "6" ; note "ttaatttatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1032323 1032328 . - . misc_feature unknown_878 ; colour "6" ; note "gtacaa, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1032419 1032431 . - . misc_feature unknown_879 ; colour "6" ; note "ctaacattaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1032466 1032471 . - . misc_feature unknown_880 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1032488 1032601 . - . mRNA SPCC825.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC825.05c" ; systematic_id "SPCC825.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 1032753 1033188 . + . misc_feature unknown_881 ; note "nominal overlap with cosmid SPCC1259, EM: AL034564 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 1032753 1033190 . + . misc_feature unknown_882 ; note "nominal overlap with cosmid SPCC825, EM:AL122011 S. pombe chromosome 3" ;
chromosome3 GeneDB 3'-UTR 1032931 1032938 . - . mRNA SPCC1259.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.01c" ; systematic_id "SPCC1259.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1032939 1033456 . - . mRNA SPCC1259.01c ; systematic_id "SPCC1259.01c" ; colour "7" ; gene "rps1802 ||| rps18-2 ||| SPCC1259.01c ||| SPCC825.06c" ; Alias "rps1802" ; db_xref "SPD:05/05B04" ; synonym "rps18-2 ||| SPCC825.06c" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0019843; rRNA binding
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR450W and YML026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1802" ; product "40S ribosomal protein S18 (predicted)" ;
chromosome3 GeneDB CDS 1032939 1033373 . - . mRNA SPCC1259.01c ; colour "7" ;
chromosome3 GeneDB CDS 1033433 1033456 . - . mRNA SPCC1259.01c ; colour "7" ;
chromosome3 GeneDB misc_feature 1033374 1033388 . - . misc_feature unknown_883 ; colour "6" ; note "ctaattcttaaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1033427 1033432 . - . misc_feature unknown_884 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1033455 1033480 . - . mRNA SPCC1259.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.01c" ; systematic_id "SPCC1259.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1034252 1034411 . - . mRNA SPCC1259.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.02c" ; systematic_id "SPCC1259.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1034412 1036880 . - . mRNA SPCC1259.02c ; db_xref "SPD:28/28H05" ; systematic_id "SPCC1259.02c" ; colour "10" ; GO "GO:0008233; peptidase activity
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ERMP1 ortholog; date=20100728" ; gene "SPCC1259.02c" ; product "Endoplasmic Reticulum metallopeptidase 1 (predicted)" ;
chromosome3 GeneDB CDS 1034412 1036880 . - . mRNA SPCC1259.02c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 1036879 1037057 . - . mRNA SPCC1259.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.02c" ; systematic_id "SPCC1259.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 1038629 1039297 . + . misc_feature unknown_885 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=low-complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG2289" ;
chromosome3 GeneDB CDS_parts 1040133 1040737 . + . mRNA SPCC1259.03 ; systematic_id "SPCC1259.03" ; colour "2" ; gene "rpa12 ||| SPCC1259.03" ; Alias "rpa12" ; db_xref "SPD:42/42D06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11254133; date=19700101 ||| term=orthologous to S. cerevisiae YJR063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0006360; transcription from RNA polymerase I promoter
GO:0006353; transcription termination
GO:0005736; DNA-directed RNA polymerase I complex" ; primary_name "rpa12" ; product "DNA-directed RNA polymerase complex I subunit Rpa12" ; EC_number "2.7.7.6" ;
chromosome3 GeneDB CDS 1040133 1040357 . + . mRNA SPCC1259.03 ; colour "2" ;
chromosome3 GeneDB CDS 1040603 1040737 . + . mRNA SPCC1259.03 ; colour "2" ;
chromosome3 GeneDB misc_feature 1040358 1040363 . + . misc_feature unknown_886 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 1040358 1040602 . + . intron SPCC1259.03 ; systematic_id "SPCC1259.03" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1040586 1040602 . + . misc_feature unknown_887 ; colour "6" ; note "ctaacaaagttttgtag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1040738 1041016 . + . mRNA SPCC1259.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.03" ; systematic_id "SPCC1259.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1041347 1041373 . + . mRNA SPCC1259.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.04" ; systematic_id "SPCC1259.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1041374 1041934 . + . mRNA SPCC1259.04 ; systematic_id "SPCC1259.04" ; colour "2" ; gene "iec3 ||| SPCC1259.04" ; Alias "iec3" ; db_xref "SPD:05/05H01" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080729 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "iec3" ; product "Ino80 complex subunit Iec3" ;
chromosome3 GeneDB CDS 1041374 1041513 . + . mRNA SPCC1259.04 ; colour "2" ;
chromosome3 GeneDB CDS 1041568 1041934 . + . mRNA SPCC1259.04 ; colour "2" ;
chromosome3 GeneDB misc_feature 1041514 1041519 . + . misc_feature unknown_888 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1041552 1041567 . + . misc_feature unknown_889 ; colour "6" ; note "ttaacctcgttcgtag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1041935 1042115 . + . mRNA SPCC1259.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.04" ; systematic_id "SPCC1259.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1042502 1042638 . - . mRNA SPCC1259.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.05c" ; systematic_id "SPCC1259.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1042639 1042877 . - . mRNA SPCC1259.05c ; systematic_id "SPCC1259.05c" ; colour "7" ; gene "cox9 ||| SPCC1259.05c" ; Alias "cox9" ; db_xref "SPD:01/01B05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL067C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration
GO:0005751; respiratory chain complex IV (sensu Eukaryota)" ; primary_name "cox9" ; product "cytochrome c oxidase subunit VIIa (predicted)" ; EC_number "1.9.3.1" ;
chromosome3 GeneDB CDS 1042639 1042780 . - . mRNA SPCC1259.05c ; colour "7" ;
chromosome3 GeneDB CDS 1042843 1042877 . - . mRNA SPCC1259.05c ; colour "7" ;
chromosome3 GeneDB misc_feature 1042781 1042796 . - . misc_feature unknown_890 ; colour "6" ; note "ctgacgaatttattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1042837 1042842 . - . misc_feature unknown_891 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1042876 1042886 . - . mRNA SPCC1259.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.05c" ; systematic_id "SPCC1259.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1043602 1043830 . + . mRNA SPCC1259.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.06" ; systematic_id "SPCC1259.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1043831 1044555 . + . mRNA SPCC1259.06 ; systematic_id "SPCC1259.06" ; colour "7" ; gene "SPCC1259.06 ||| taf8" ; Alias "taf8" ; db_xref "SPD:08/08F05" ; synonym "taf8" ; GO "GO:0005669; transcription factor TFIID complex
GO:0003702; RNA polymerase II transcription factor activity
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML114C; date=19700101 ||| term=histone fold; date=20070726 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "taf8" ; product "transcription factor TFIID complex subunit 8 (predicted)" ;
chromosome3 GeneDB CDS 1043831 1043924 . + . mRNA SPCC1259.06 ; colour "7" ;
chromosome3 GeneDB CDS 1043981 1044555 . + . mRNA SPCC1259.06 ; colour "7" ;
chromosome3 GeneDB misc_feature 1043925 1043930 . + . misc_feature unknown_892 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1043965 1043980 . + . misc_feature unknown_893 ; colour "6" ; note "ctaatagcaataatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1044556 1044976 . + . mRNA SPCC1259.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.06" ; systematic_id "SPCC1259.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1045467 1046568 . + . mRNA SPCC1259.07 ; systematic_id "SPCC1259.07" ; colour "2" ; gene "SPCC1259.07 ||| rxt3" ; Alias "rxt3" ; db_xref "SPD:17/17C10" ; GO "GO:0016575; histone deacetylation
GO:0005634; nucleus
GO:0006342; chromatin silencing
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL076C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=human CRISPLD2 ortholog; qualifier=predicted; date=20100919 ||| term=species distribution, conserved in Eukaryotes only; date=20100919 ||| term=species distribution, conserved in Metazoa; date=20100919 ||| term=species distribution, conserved in Vertebrates; date=20100919" ; primary_name "rxt3" ; product "transcriptional regulatory protein Rxt3" ;
chromosome3 GeneDB CDS 1045467 1045498 . + . mRNA SPCC1259.07 ; colour "2" ;
chromosome3 GeneDB CDS 1045545 1046568 . + . mRNA SPCC1259.07 ; colour "2" ;
chromosome3 GeneDB misc_feature 1045499 1045504 . + . misc_feature unknown_894 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1045534 1045544 . + . misc_feature unknown_895 ; colour "6" ; note "ctaacttgtag, splice branch and acceptor" ;
chromosome3 GeneDB 5'-UTR 1047616 1048602 . + . mRNA SPCC1259.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.08" ; systematic_id "SPCC1259.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1048603 1049787 . + . mRNA SPCC1259.08 ; db_xref "SPD:18/18H02" ; systematic_id "SPCC1259.08" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1259.08" ; product "conserved fungal protein, DUF2457 family" ; note "N-terminal may need truncating" ;
chromosome3 GeneDB CDS 1048603 1049787 . + . mRNA SPCC1259.08 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 1049788 1049981 . + . mRNA SPCC1259.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.08" ; systematic_id "SPCC1259.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1050036 1050086 . - . mRNA SPCC1259.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.09c" ; systematic_id "SPCC1259.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1050087 1051713 . - . mRNA SPCC1259.09c ; systematic_id "SPCC1259.09c" ; colour "7" ; gene "SPCC1259.09c" ; Alias "pdx1" ; db_xref "KEGG:MAP00620; ||| SPD:45/45D10" ; GO "GO:0006086; acetyl-CoA biosynthesis from pyruvate
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, lipoylated; attribution=pers. comm. J. Stolz; date=20100304 ||| term=orthologous to S. cerevisiae YGR193C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pdx1" ; product "pyruvate dehydrogenase protein x component, Pdx1 (predicted)" ;
chromosome3 GeneDB CDS 1050087 1050372 . - . mRNA SPCC1259.09c ; colour "7" ;
chromosome3 GeneDB CDS 1050415 1050646 . - . mRNA SPCC1259.09c ; colour "7" ;
chromosome3 GeneDB CDS 1050695 1051324 . - . mRNA SPCC1259.09c ; colour "7" ;
chromosome3 GeneDB CDS 1051391 1051435 . - . mRNA SPCC1259.09c ; colour "7" ;
chromosome3 GeneDB CDS 1051477 1051581 . - . mRNA SPCC1259.09c ; colour "7" ;
chromosome3 GeneDB CDS 1051641 1051713 . - . mRNA SPCC1259.09c ; colour "7" ;
chromosome3 GeneDB misc_feature 1050373 1050384 . - . misc_feature unknown_896 ; colour "6" ; note "ttaaccgtacag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1050373 1050414 . - . intron SPCC1259.09c ; systematic_id "SPCC1259.09c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1050409 1050414 . - . misc_feature unknown_897 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1050647 1050662 . - . misc_feature unknown_898 ; colour "6" ; note "ctaatatctttttcag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1050647 1050694 . - . intron SPCC1259.09c ; systematic_id "SPCC1259.09c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1050689 1050694 . - . misc_feature unknown_899 ; colour "6" ; note "gtattg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1051325 1051339 . - . misc_feature unknown_900 ; colour "6" ; note "ctaacggtattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1051385 1051390 . - . misc_feature unknown_901 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1051436 1051451 . - . misc_feature unknown_902 ; colour "6" ; note "ctaattctttacgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1051471 1051476 . - . misc_feature unknown_903 ; colour "6" ; note "gttggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1051582 1051603 . - . misc_feature unknown_904 ; colour "6" ; note "ttaacagaataattttttgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1051635 1051640 . - . misc_feature unknown_905 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1051712 1051797 . - . mRNA SPCC1259.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.09c" ; systematic_id "SPCC1259.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1051907 1052317 . + . mRNA SPCC1259.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.10" ; systematic_id "SPCC1259.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1052318 1053649 . + . mRNA SPCC1259.10 ; systematic_id "SPCC1259.10" ; colour "2" ; gene "pgp1 ||| SPCC1259.10" ; db_xref "SPD:44/44C07" ; Alias "pgp1" ; GO "GO:0004252; serine-type endopeptidase activity
GO:0008270; zinc ion binding
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL104C; date=19700101 ||| term=name description, pombe glycoprotease; cv=name_description; db_xref=PMID:11115118; date=20070723 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Pombe GlycoProtease; date=20101215" ; primary_name "pgp1" ; product "mitochondrial metallopeptidase involved in genome maintenance Pgp1" ;
chromosome3 GeneDB CDS 1052318 1052481 . + . mRNA SPCC1259.10 ; colour "2" ;
chromosome3 GeneDB CDS 1052520 1052829 . + . mRNA SPCC1259.10 ; colour "2" ;
chromosome3 GeneDB CDS 1052885 1053649 . + . mRNA SPCC1259.10 ; colour "2" ;
chromosome3 GeneDB misc_feature 1052482 1052487 . + . misc_feature unknown_906 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1052506 1052519 . + . misc_feature unknown_907 ; colour "6" ; note "ctaatttattatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1052830 1052835 . + . misc_feature unknown_908 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1052867 1052884 . + . misc_feature unknown_909 ; colour "6" ; note "ttaatgaagagtttgtag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1053650 1053665 . + . mRNA SPCC1259.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.10" ; systematic_id "SPCC1259.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1053720 1053865 . - . mRNA SPCC1259.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.11c" ; systematic_id "SPCC1259.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1053866 1056028 . - . mRNA SPCC1259.11c ; systematic_id "SPCC1259.11c" ; colour "7" ; gene "SPCC1259.11c ||| gyp2" ; Alias "gyp2" ; db_xref "SPD:37/37G02" ; GO "GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GRAM domain; date=19700101 ||| term=orthologous to S. cerevisiae YGR100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gyp2" ; product "GTPase activating protein Gyp2 (predicted)" ; reserved_name "gyp2" ;
chromosome3 GeneDB CDS 1053866 1056028 . - . mRNA SPCC1259.11c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1056027 1056141 . - . mRNA SPCC1259.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.11c" ; systematic_id "SPCC1259.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1056471 1056494 . - . mRNA SPCC1259.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.12c" ; systematic_id "SPCC1259.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1056495 1058189 . - . mRNA SPCC1259.12c ; db_xref "SPD:45/45E12" ; systematic_id "SPCC1259.12c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008536; Ran GTPase binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007039; vacuolar protein catabolism
GO:0034657; GID complex
GO:0045721; negative regulation of gluconeogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CTLH domain; date=19700101 ||| term=orthologous to S. cerevisiae YGL227W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RANBP9 and RANBP10 ortholog; date=20100908" ; gene "SPCC1259.12c" ; product "Ran GTPase binding protein (predicted)" ;
chromosome3 GeneDB CDS 1056495 1056590 . - . mRNA SPCC1259.12c ; colour "7" ;
chromosome3 GeneDB CDS 1056685 1056737 . - . mRNA SPCC1259.12c ; colour "7" ;
chromosome3 GeneDB CDS 1056787 1057191 . - . mRNA SPCC1259.12c ; colour "7" ;
chromosome3 GeneDB CDS 1057239 1057880 . - . mRNA SPCC1259.12c ; colour "7" ;
chromosome3 GeneDB CDS 1057925 1058189 . - . mRNA SPCC1259.12c ; colour "7" ;
chromosome3 GeneDB misc_feature 1056591 1056601 . - . misc_feature unknown_910 ; colour "6" ; note "ctaaataaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1056679 1056684 . - . misc_feature unknown_911 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1056738 1056749 . - . misc_feature unknown_912 ; colour "6" ; note "ctaatgatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1056781 1056786 . - . misc_feature unknown_913 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1057192 1057205 . - . misc_feature unknown_914 ; colour "6" ; note "ttgacacttattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1057233 1057238 . - . misc_feature unknown_915 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1057881 1057894 . - . misc_feature unknown_916 ; colour "6" ; note "ctaatctttaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1057919 1057924 . - . misc_feature unknown_917 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 1058615 1058889 . - . mRNA SPCC1259.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.15c" ; systematic_id "SPCC1259.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1058890 1059737 . - . mRNA SPCC1259.15c ; systematic_id "SPCC1259.15c" ; colour "2" ; gene "ubc11 ||| ubcdp ||| ubcp4 ||| SPCC1259.15c" ; note "S. cerevisiae E2-C, is not a functional homolog of this E2 because it is not required for the degradation of mitotic cyclin" ; Alias "ubc11" ; db_xref "SPD:43/43D10" ; synonym "ubcdp ||| ubcp4" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9154838; date=19700101 ||| term=orthologous to S. cerevisiae YOR339C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Cdc13; db_xref=PMID:9154838; date=20100826" ; GO "GO:0005737; cytoplasm
GO:0004842; ubiquitin conjugating enzyme activity
GO:0000070; mitotic sister chromatid segregation
GO:0008054; cyclin catabolism
GO:0016567; protein ubiquitination
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0007346; regulation of progression through mitotic cell cycle" ; primary_name "ubc11" ; product "ubiquitin conjugating enzyme E2-C, Ubc11" ; EC_number "6.3.2.19" ;
chromosome3 GeneDB CDS 1058890 1058971 . - . mRNA SPCC1259.15c ; colour "2" ;
chromosome3 GeneDB CDS 1059022 1059257 . - . mRNA SPCC1259.15c ; colour "2" ;
chromosome3 GeneDB CDS 1059427 1059516 . - . mRNA SPCC1259.15c ; colour "2" ;
chromosome3 GeneDB CDS 1059567 1059594 . - . mRNA SPCC1259.15c ; colour "2" ;
chromosome3 GeneDB CDS 1059643 1059737 . - . mRNA SPCC1259.15c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1059736 1059770 . - . mRNA SPCC1259.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.15c" ; systematic_id "SPCC1259.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1059935 1060019 . + . mRNA SPCC1259.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1259.13" ; systematic_id "SPCC1259.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1060020 1061775 . + . mRNA SPCC1259.13 ; systematic_id "SPCC1259.13" ; colour "2" ; gene "chk1 ||| rad27 ||| SPCC1259.13" ; Alias "chk1" ; db_xref "SPD:45/45G09" ; synonym "rad27" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0000077; mitotic cell cycle G2-M transition DNA damage checkpoint
GO:0006468; protein amino acid phosphorylation
GO:0005654; nucleoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR274W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:14668484; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Cdc25; qualifier=phosphorylates|inhibits; db_xref=PMID:9278510; date=20100415 ||| term=target of Rad3; qualifier=phosphorylated_by; db_xref=PMID:10512862; date=20100415" ; primary_name "chk1" ; product "Chk1 protein kinase" ;
chromosome3 GeneDB CDS 1060020 1060087 . + . mRNA SPCC1259.13 ; colour "2" ;
chromosome3 GeneDB CDS 1060133 1060374 . + . mRNA SPCC1259.13 ; colour "2" ;
chromosome3 GeneDB CDS 1060421 1060849 . + . mRNA SPCC1259.13 ; colour "2" ;
chromosome3 GeneDB CDS 1060888 1061095 . + . mRNA SPCC1259.13 ; colour "2" ;
chromosome3 GeneDB CDS 1061142 1061331 . + . mRNA SPCC1259.13 ; colour "2" ;
chromosome3 GeneDB CDS 1061377 1061673 . + . mRNA SPCC1259.13 ; colour "2" ;
chromosome3 GeneDB CDS 1061719 1061775 . + . mRNA SPCC1259.13 ; colour "2" ;
chromosome3 GeneDB misc_feature 1060088 1060093 . + . misc_feature unknown_918 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB intron 1060088 1060132 . + . intron SPCC1259.13 ; systematic_id "SPCC1259.13" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1060119 1060132 . + . misc_feature unknown_919 ; colour "6" ; note "ctaacttaagcaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1060375 1060380 . + . misc_feature unknown_920 ; colour "6" ; note "gtgggt, splice donor sequence" ;
chromosome3 GeneDB intron 1060375 1060420 . + . intron SPCC1259.13 ; systematic_id "SPCC1259.13" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1060401 1060420 . + . misc_feature unknown_921 ; colour "6" ; note "ctaacggacttacaatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1060850 1060855 . + . misc_feature unknown_922 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 1060850 1060887 . + . intron SPCC1259.13 ; systematic_id "SPCC1259.13" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1060877 1060887 . + . misc_feature unknown_923 ; colour "6" ; note "ctaatgatcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1061096 1061101 . + . misc_feature unknown_924 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB intron 1061096 1061141 . + . intron SPCC1259.13 ; systematic_id "SPCC1259.13" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1061125 1061141 . + . misc_feature unknown_925 ; colour "6" ; note "ctaactctttcaattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1061227 1061229 . + . misc_feature unknown_926 ; note "phosphorylation site ||| phosphorylation:Rad3p:activates:PMID 11553781" ;
chromosome3 GeneDB misc_feature 1061332 1061337 . + . misc_feature unknown_927 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome3 GeneDB intron 1061332 1061376 . + . intron SPCC1259.13 ; systematic_id "SPCC1259.13" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1061360 1061376 . + . misc_feature unknown_928 ; colour "6" ; note "ctaactatatgaaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1061674 1061679 . + . misc_feature unknown_929 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 1061674 1061718 . + . intron SPCC1259.13 ; systematic_id "SPCC1259.13" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1061703 1061718 . + . misc_feature unknown_930 ; colour "6" ; note "ctaatccatgtgaaag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 1061985 1064195 . - . mRNA SPCC1259.14c ; systematic_id "SPCC1259.14c" ; colour "12" ; db_xref "SPD:37/37H10" ; obsolete_name "B8647-6" ; Alias "meu27" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, NLS; qualifier=predicted; db_xref=PMID:11376151; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu27" ; product "S. pombe specific UPF0300 family protein 5" ;
chromosome3 GeneDB CDS 1061985 1064195 . - . mRNA SPCC1259.14c ; colour "12" ;
chromosome3 GeneDB tRNA 1065044 1065117 . - . tRNA SPCTRNAALA.12 ; systematic_id "SPCTRNAALA.12" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033446; AGC codon-amino acid adaptor activity" ; gene "SPCTRNAALA.12" ; product "tRNA Alanine" ; note "tRNA Ala anticodon AGC, Cove score 56.39" ;
chromosome3 GeneDB tRNA 1065778 1065860 . - . tRNA SPCTRNAVAL.12 ; systematic_id "SPCTRNAVAL.12" ; pseudo "_no_value" ; product "tRNA_pseudo anticodon AAC" ; note "tRNA Pseudo anticodon AAC, Cove score 40.82" ;
chromosome3 GeneDB intron 1065814 1065822 . - . intron unknown_931 ; note "intron tRNA Val anticodon AAC" ;
chromosome3 GeneDB misc_RNA 1066011 1066485 . + . misc_RNA SPNCRNA.480 ; db_xref "PMID:18488015" ; synonym "SPNG2291" ; systematic_id "SPNCRNA.480" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB tRNA 1066628 1066709 . + . tRNA SPCTRNASER.09 ; systematic_id "SPCTRNASER.09" ; GO "GO:0005737; cytoplasm
GO:0033447; AGA codon-amino acid adaptor activity
GO:0006414; translational elongation" ; gene "SPCTRNASER.09" ; product "tRNA Serine" ; note "tRNA Ser anticodon AGA, Cove score 59.19" ;
chromosome3 GeneDB tRNA 1067092 1067164 . - . tRNA SPCTRNAARG.10 ; systematic_id "SPCTRNAARG.10" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033408; TCG codon-amino acid adaptor activity" ; gene "SPCTRNAARG.10" ; product "tRNA Arginine" ; note "tRNA Arg anticodon TCG, Cove score 59.66" ;
chromosome3 GeneDB tRNA 1068029 1068099 . + . tRNA SPCTRNAASP.05 ; systematic_id "SPCTRNAASP.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033450; GTC codon-amino acid adaptor activity" ; gene "SPCTRNAASP.05" ; product "tRNA Asparagine" ; note "tRNA Asp anticodon GTC, Cove score 57.96" ;
chromosome3 GeneDB tRNA 1068182 1068254 . - . tRNA SPCTRNAARG.11 ; systematic_id "SPCTRNAARG.11" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033440; ACG codon-amino acid adaptor activity" ; gene "SPCTRNAARG.11" ; product "tRNA Arginine" ; note "tRNA Arg anticodon ACG, Cove score 54.83" ;
chromosome3 GeneDB misc_RNA 1068658 1068746 . + . misc_RNA SPNCRNA.481 ; db_xref "PMID:18488015" ; synonym "SPNG2293" ; systematic_id "SPNCRNA.481" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB tRNA 1069166 1069244 . + . tRNA SPCTRNALEU.11 ; systematic_id "SPCTRNALEU.11" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033444; AAG codon-amino acid adaptor activity" ; gene "SPCTRNALEU.11" ; product "tRNA Leucine" ; note "tRNA Leu anticodon AAG, Cove score 46.56" ;
chromosome3 GeneDB misc_feature 1070904 1070999 . + . misc_feature unknown_932 ; note "nominal overlap with cosmid c1259" ;
chromosome3 GeneDB repeat_region 1070904 1072203 . + . repeat_region unknown_933 ; colour "1" ; note "centromeric region duplicated in SPCC4B3 S. pombe chromosome 3" ;
chromosome3 GeneDB tRNA 1071093 1071175 . + . tRNA SPCTRNALYS.10 ; systematic_id "SPCTRNALYS.10" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033417; CTT codon-amino acid adaptor activity" ; gene "SPCTRNALYS.10" ; product "tRNA Lysine" ; note "tRNA Lys anticodon CTT, Cove score 57.56" ;
chromosome3 GeneDB repeat_region 1073708 1075339 . + . repeat_region unknown_934 ; colour "2" ; note "dhI repeat" ;
chromosome3 GeneDB repeat_region 1076115 1078499 . + . repeat_region unknown_935 ; colour "3" ; note "cen3b dgIII repeat" ;
chromosome3 GeneDB repeat_region 1078494 1078884 . + . repeat_region unknown_936 ; colour "1" ; note "region between dg and dh repeat" ;
chromosome3 GeneDB repeat_region 1078934 1082875 . + . repeat_region unknown_937 ; colour "2" ; note "cen3a dhIII repeat" ;
chromosome3 GeneDB repeat_region 1082876 1083348 . + . repeat_region unknown_938 ; colour "3" ; note "dgIII repeat partial" ;
chromosome3 GeneDB repeat_region 1083449 1084747 . + . repeat_region unknown_939 ; colour "2" ; note "dhIII repeat partial" ;
chromosome3 GeneDB repeat_region 1084748 1087132 . + . repeat_region unknown_940 ; colour "3" ; note "dgIII repeat cen3b 250bp" ;
chromosome3 GeneDB repeat_region 1087127 1087517 . + . repeat_region unknown_941 ; colour "12" ; note "region between dg and dh repeat" ;
chromosome3 GeneDB repeat_region 1087567 1091508 . + . repeat_region unknown_942 ; colour "2" ; note "cen3a dhIII repeat" ;
chromosome3 GeneDB repeat_region 1090919 1091558 . + . repeat_region unknown_943 ; colour "2" ; note "dhIII repeat" ;
chromosome3 GeneDB misc_feature 1090919 1100585 . - . misc_feature unknown_944 ; note "nominal overlap with cosmid c1676" ;
chromosome3 GeneDB repeat_region 1091315 1091705 . + . repeat_region unknown_945 ; colour "11" ; note "cen3xc central region" ;
chromosome3 GeneDB misc_RNA 1091428 1091919 . + . misc_RNA SPNCRNA.482 ; db_xref "PMID:18488015" ; synonym "SPNG2323" ; systematic_id "SPNCRNA.482" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB repeat_region 1091700 1097063 . + . repeat_region unknown_946 ; colour "1" ; note "imr3L" ;
chromosome3 GeneDB tRNA 1092437 1092507 . + . tRNA SPCTRNAASP.06 ; systematic_id "SPCTRNAASP.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033450; GTC codon-amino acid adaptor activity" ; gene "SPCTRNAASP.06" ; product "tRNA Asparagine" ; note "tRNA Asp anticodon GTC, Cove score 70.49" ;
chromosome3 GeneDB tRNA 1092595 1092667 . - . tRNA SPCTRNAARG.12 ; systematic_id "SPCTRNAARG.12" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033440; ACG codon-amino acid adaptor activity" ; gene "SPCTRNAARG.12" ; product "tRNA Arginine" ; note "tRNA Arg anticodon ACG, Cove score 75.46" ;
chromosome3 GeneDB tRNA 1092934 1093016 . + . tRNA SPCTRNAVAL.09 ; systematic_id "SPCTRNAVAL.09" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033442; AAC codon-amino acid adaptor activity" ; gene "SPCTRNAVAL.09" ; product "tRNA Valine" ; note "tRNA Val anticodon AAC, Cove score 64.30" ;
chromosome3 GeneDB intron 1092972 1092980 . + . intron unknown_947 ; note "intron tRNA Val anticodon AAC" ;
chromosome3 GeneDB tRNA 1093083 1093154 . - . tRNA SPCTRNATHR.08 ; systematic_id "SPCTRNATHR.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033445; AGT codon-amino acid adaptor activity" ; gene "SPCTRNATHR.08" ; product "tRNA Threonine" ; note "tRNA Thr anticodon AGT, Cove score 75.01" ;
chromosome3 GeneDB misc_RNA 1093231 1093387 . + . misc_RNA SPNCRNA.483 ; db_xref "PMID:18488015" ; synonym "SPNG2325" ; systematic_id "SPNCRNA.483" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB tRNA 1096085 1096185 . - . tRNA SPCTRNALEU.12 ; systematic_id "SPCTRNALEU.12" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033427; CAA codon-amino acid adaptor activity" ; gene "SPCTRNALEU.12" ; product "tRNA Leucine" ; note "tRNA Leu anticodon CAA, Cove score 56.07" ;
chromosome3 GeneDB intron 1096129 1096147 . - . intron unknown_948 ; note "intron tRNA Leu anticodon CAA" ;
chromosome3 GeneDB repeat_region 1097064 1101930 . + . repeat_region unknown_949 ; colour "4" ; note "cnt3" ;
chromosome3 GeneDB tRNA 1097499 1097570 . - . tRNA SPCTRNAGLU.10 ; systematic_id "SPCTRNAGLU.10" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033418; CTC codon-amino acid adaptor activity" ; gene "SPCTRNAGLU.10" ; product "tRNA Glutamic acid" ; note "tRNA Glu anticodon CTC, Cove score 74.15" ;
chromosome3 GeneDB repeat_region 1101931 1107294 . + . repeat_region unknown_950 ; colour "1" ; note "imr3R" ;
chromosome3 GeneDB tRNA 1102809 1102909 . + . tRNA SPCTRNALEU.13 ; systematic_id "SPCTRNALEU.13" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033427; CAA codon-amino acid adaptor activity" ; gene "SPCTRNALEU.13" ; product "tRNA Leucine" ; note "tRNA Leu anticodon CAA, Cove score 56.07" ;
chromosome3 GeneDB intron 1102847 1102865 . + . intron unknown_951 ; note "intron tRNA Leu anticodon CAA" ;
chromosome3 GeneDB misc_RNA 1105609 1105766 . + . misc_RNA SPNCRNA.484 ; db_xref "PMID:18488015" ; synonym "SPNG2327" ; systematic_id "SPNCRNA.484" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB tRNA 1105840 1105911 . + . tRNA SPCTRNATHR.09 ; systematic_id "SPCTRNATHR.09" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033445; AGT codon-amino acid adaptor activity" ; gene "SPCTRNATHR.09" ; product "tRNA Threonine" ; note "tRNA Thr anticodon AGT, Cove score 75.01" ;
chromosome3 GeneDB tRNA 1105978 1106060 . - . tRNA SPCTRNAVAL.10 ; systematic_id "SPCTRNAVAL.10" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033442; AAC codon-amino acid adaptor activity" ; gene "SPCTRNAVAL.10" ; product "tRNA Valine" ; note "tRNA Val anticodon AAC, Cove score 64.30" ;
chromosome3 GeneDB intron 1106014 1106022 . - . intron unknown_952 ; note "intron tRNA Val anticodon AAC" ;
chromosome3 GeneDB tRNA 1106327 1106399 . + . tRNA SPCTRNAARG.13 ; systematic_id "SPCTRNAARG.13" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033440; ACG codon-amino acid adaptor activity" ; gene "SPCTRNAARG.13" ; product "tRNA Arginine" ; note "tRNA Arg anticodon ACG, Cove score 75.46" ;
chromosome3 GeneDB tRNA 1106487 1106557 . - . tRNA SPCTRNAASP.07 ; systematic_id "SPCTRNAASP.07" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033450; GTC codon-amino acid adaptor activity" ; gene "SPCTRNAASP.07" ; product "tRNA Asparagine" ; note "tRNA Asp anticodon GTC, Cove score 70.49" ;
chromosome3 GeneDB misc_RNA 1107075 1107575 . + . misc_RNA SPNCRNA.485 ; db_xref "PMID:18488015" ; synonym "SPNG2330" ; systematic_id "SPNCRNA.485" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=genome organization, centromeric transcript; cv=genome_org; db_xref=PMID:18488015; date=20071008" ; product "non-coding RNA, centromeric (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB repeat_region 1107289 1107679 . + . repeat_region unknown_953 ; colour "11" ; note "cen3xc central region" ;
chromosome3 GeneDB repeat_region 1107680 1111378 . + . repeat_region unknown_954 ; colour "2" ; note "cen3a dhIII repeat" ;
chromosome3 GeneDB repeat_region 1111428 1111728 . + . repeat_region unknown_955 ; colour "12" ; note "region between dg and dh repeat" ;
chromosome3 GeneDB misc_feature 1111813 1114198 . + . misc_feature unknown_956 ; colour "3" ; note "cen3b dgIII repeat" ;
chromosome3 GeneDB repeat_region 1114197 1118138 . + . repeat_region unknown_957 ; colour "2" ; note "cen3a dhIII repeat" ;
chromosome3 GeneDB repeat_region 1118188 1118578 . + . repeat_region unknown_958 ; colour "12" ; note "region between dg and dh repeat" ;
chromosome3 GeneDB repeat_region 1118573 1120957 . + . repeat_region unknown_959 ; colour "3" ; note "cen3b dgIII repeat" ;
chromosome3 GeneDB repeat_region 1120957 1124898 . + . repeat_region unknown_960 ; colour "2" ; note "cen3a dhIII repeat" ;
chromosome3 GeneDB repeat_region 1124948 1125338 . + . repeat_region unknown_961 ; colour "12" ; note "region between dg and dh repeat" ;
chromosome3 GeneDB repeat_region 1125333 1125582 . + . repeat_region unknown_962 ; colour "3" ; note "cen3b dgIII repeat" ;
chromosome3 GeneDB repeat_region 1127717 1131658 . + . repeat_region unknown_963 ; colour "2" ; note "cen3a dhIII repeat" ;
chromosome3 GeneDB repeat_region 1131708 1132098 . + . repeat_region unknown_964 ; colour "12" ; note "region between dg and dh repeat" ;
chromosome3 GeneDB repeat_region 1132093 1134478 . + . repeat_region unknown_965 ; colour "3" ; note "cen3b dgIII repeat" ;
chromosome3 GeneDB repeat_region 1135372 1137003 . + . repeat_region unknown_966 ; colour "2" ; note "dh repeat" ;
chromosome3 GeneDB misc_feature 1138508 1138704 . + . misc_feature unknown_967 ; note "nominal overlap with cosmid SPCC4B3 and pB5A12" ;
chromosome3 GeneDB tRNA 1139536 1139618 . - . tRNA SPCTRNALYS.11 ; systematic_id "SPCTRNALYS.11" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033417; CTT codon-amino acid adaptor activity" ; gene "SPCTRNALYS.11" ; product "tRNA Lysine" ; note "tRNA Lys anticodon CTT, Cove score 74.69" ;
chromosome3 GeneDB intron 1139572 1139579 . - . intron unknown_968 ; note "intron tRNA Lys anticodon CTT" ;
chromosome3 GeneDB tRNA 1142192 1142264 . - . tRNA SPCTRNAPHE.05 ; systematic_id "SPCTRNAPHE.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033459; GAA codon-amino acid adaptor activity" ; gene "SPCTRNAPHE.05" ; product "tRNA Phenylalanine" ; note "tRNA Phe anticodon GAA, Cove score 69.56" ;
chromosome3 GeneDB 3'-UTR 1142692 1143090 . - . mRNA SPCC4B3.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.18" ; systematic_id "SPCC4B3.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1143091 1144041 . - . mRNA SPCC4B3.18 ; db_xref "SPD:13/13D05" ; systematic_id "SPCC4B3.18" ; colour "7" ; GO "GO:0015937; coenzyme A biosynthesis
GO:0004632; phosphopantothenate--cysteine ligase activity
GO:0005634; nucleus
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL083C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC4B3.18" ; product "phosphopantothenate-cysteine ligase (predicted)" ;
chromosome3 GeneDB CDS 1143091 1144041 . - . mRNA SPCC4B3.18 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1144040 1144342 . - . mRNA SPCC4B3.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.18" ; systematic_id "SPCC4B3.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1144291 1144467 . + . mRNA SPCC4B3.20 ; db_xref "PMID:21270388" ; systematic_id "SPCC4B3.20" ;
chromosome3 GeneDB CDS_parts 1144468 1144799 . + . mRNA SPCC4B3.20 ; Alias "cmc2" ; synonym "new24" ; systematic_id "SPCC4B3.20" ; colour "7" ; GO "GO:0005507; copper ion binding
GO:0031314; extrinsic to mitochondrial inner membrane
GO:0033617; mitochondrial respiratory chain complex IV assembly" ; controlled_curation "term=orthologous to S. cerevisiae YKL137W; date=20090722 ||| term=conserved in Fungi; date=20090722 ||| term=conserved in Metazoa; date=20090722 ||| term=conserved in Vertebrates; date=20090722 ||| term=conserved in Eukaryotes; date=20090722 ||| term=conserved in Eukaryotes only; date=20090722 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "cmc2" ; product "copper binding protein of the mitchondrial inner membrane Cmc2" ;
chromosome3 GeneDB CDS 1144468 1144646 . + . mRNA SPCC4B3.20 ; colour "7" ;
chromosome3 GeneDB CDS 1144709 1144799 . + . mRNA SPCC4B3.20 ; colour "7" ;
chromosome3 GeneDB intron 1144647 1144708 . + . intron unknown_969 ; db_xref "PMID:21270388" ; note "confirmed" ;
chromosome3 GeneDB 3'-UTR 1144800 1144918 . + . mRNA SPCC4B3.20 ; db_xref "PMID:21270388" ; systematic_id "SPCC4B3.20" ;
chromosome3 GeneDB CDS_parts 1145056 1145907 . - . mRNA SPCC4B3.17 ; systematic_id "SPCC4B3.17" ; colour "7" ; gene "cbp3 ||| SPCC4B3.17" ; Alias "cbp3" ; db_xref "SPD:11/11C02" ; GO "GO:0005743; mitochondrial inner membrane
GO:0033108; mitochondrial respiratory chain complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL215W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cbp3" ; product "ubiquinol cytochrome-c reductase assembly protein Cbp3 (predicted)" ;
chromosome3 GeneDB CDS 1145056 1145907 . - . mRNA SPCC4B3.17 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1145906 1145990 . - . mRNA SPCC4B3.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.17" ; systematic_id "SPCC4B3.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1146375 1146382 . - . mRNA SPCC4B3.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.16" ; systematic_id "SPCC4B3.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1146383 1147141 . - . mRNA SPCC4B3.16 ; systematic_id "SPCC4B3.16" ; colour "2" ; gene "tip41 ||| SPCC4B3.16" ; Alias "tip41" ; db_xref "SPD:43/43B07" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008601; protein phosphatase type 2A regulator activity
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0031929; TOR signaling pathway
GO:0006995; cellular response to nitrogen starvation" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:16297994; date=19700101 ||| term=orthologous to S. cerevisiae YPR040W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tip41" ; product "TIP41-like type 2a phosphatase regulator Tip41" ;
chromosome3 GeneDB CDS 1146383 1147141 . - . mRNA SPCC4B3.16 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1147140 1147200 . - . mRNA SPCC4B3.16 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.16" ; systematic_id "SPCC4B3.16" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1147316 1147452 . - . mRNA SPCC4B3.15 ; ID "SPCC4B3.15" ; systematic_id "SPCC4B3.15" ; note "mRNA from SPDMF1" ;
chromosome3 GeneDB CDS_parts 1147453 1150215 . - . mRNA SPCC4B3.15 ; systematic_id "SPCC4B3.15" ; colour "2" ; gene "dmf1 ||| mid1 ||| SPCC4B3.15" ; Alias "mid1" ; db_xref "SPD:47/47B12" ; synonym "dmf1" ; GO "GO:0071341; medial cortical node
GO:0031097; medial ring
GO:0005634; nucleus
GO:0005515; protein binding
GO:0033205; cell cycle cytokinesis
GO:0034613; cellular protein localization
GO:0051260; protein homooligomerization
GO:0010687; site selection involved in cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=localization dependent on Cdr2; db_xref=PMID:19474789; date=20090826 ||| term=human ANLN ortholog; date=20110114" ; primary_name "mid1" ; product "medial ring protein Mid1" ;
chromosome3 GeneDB CDS 1147453 1150215 . - . mRNA SPCC4B3.15 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1150216 1151324 . - . mRNA SPCC4B3.15 ; ID "SPCC4B3.15" ; systematic_id "SPCC4B3.15" ; note "mRNA from SPDMF1" ;
chromosome3 GeneDB CDS_parts 1150842 1151714 . - . mRNA SPCC4B3.14 ; systematic_id "SPCC4B3.14" ; colour "2" ; gene "cwf20 ||| SPCC4B3.14" ; Alias "cwf20" ; db_xref "SPD:11/11G11" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "cwf20" ; product "complexed with Cdc5 protein Cwf20" ;
chromosome3 GeneDB CDS 1150842 1151714 . - . mRNA SPCC4B3.14 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1151713 1151766 . - . mRNA SPCC4B3.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.14" ; systematic_id "SPCC4B3.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1152150 1152242 . - . mRNA SPCC4B3.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.13" ; systematic_id "SPCC4B3.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1152243 1153862 . - . mRNA SPCC4B3.13 ; db_xref "SPD:25/25H10" ; systematic_id "SPCC4B3.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR338C and YHR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; gene "SPCC4B3.13" ; product "MatE family transporter (predicted)" ;
chromosome3 GeneDB CDS 1152243 1153862 . - . mRNA SPCC4B3.13 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1153861 1153911 . - . mRNA SPCC4B3.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.13" ; systematic_id "SPCC4B3.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1154076 1154280 . - . mRNA SPCC4B3.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.12" ; systematic_id "SPCC4B3.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1154281 1155606 . - . mRNA SPCC4B3.12 ; systematic_id "SPCC4B3.12" ; colour "2" ; gene "set9 ||| SPCC4B3.12" ; Alias "set9" ; db_xref "SPD:23/23A10" ; synonym "SPCC4B3.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=20070412 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15550243; date=20070412 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15550243; date=20090110 ||| term=human SUV42OH1 and SUV42OH2 ortholog; date=20100908" ; GO "GO:0000790; nuclear chromatin
GO:0042799; histone lysine N-methyltransferase activity (H4-K20 specific)
GO:0000077; DNA damage checkpoint
GO:0000077; DNA damage checkpoint
GO:0000077; DNA damage checkpoint
GO:0034613; cellular protein localization
GO:0006342; chromatin silencing
GO:0016571; histone methylation
GO:0006355; regulation of transcription, DNA- dependent" ; primary_name "set9" ; product "histone lysine methyltransferase Set9" ;
chromosome3 GeneDB CDS 1154281 1155606 . - . mRNA SPCC4B3.12 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1155605 1156055 . - . mRNA SPCC4B3.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.12" ; systematic_id "SPCC4B3.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1156111 1156205 . + . mRNA SPCC4B3.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.11c" ; systematic_id "SPCC4B3.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1156206 1156556 . + . mRNA SPCC4B3.11c ; db_xref "SPD:02/02C05" ; systematic_id "SPCC4B3.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL046C; date=19700101 ||| term=human BOLA3 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPCC4B3.11c" ; product "mitochondrial conserved eukaryotic protein" ;
chromosome3 GeneDB CDS 1156206 1156556 . + . mRNA SPCC4B3.11c ; colour "10" ;
chromosome3 GeneDB CDS_parts 1158148 1160126 . + . mRNA SPCC4B3.10c ; systematic_id "SPCC4B3.10c" ; colour "2" ; gene "ipk1 ||| SPCC4B3.10c" ; Alias "ipk1" ; db_xref "SPD:27/27C04" ; GO "GO:0005634; nucleus
GO:0004428; inositol or phosphatidylinositol kinase activity
GO:0032958; inositol phosphate biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR315C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "ipk1" ; product "inositol 1,3,4,5,6-pentakisphosphate (IP5) kinase" ;
chromosome3 GeneDB CDS 1158148 1158160 . + . mRNA SPCC4B3.10c ; colour "2" ;
chromosome3 GeneDB CDS 1158217 1160126 . + . mRNA SPCC4B3.10c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1160127 1160394 . + . mRNA SPCC4B3.10c ; ID "SPCC4B3.10c" ; systematic_id "SPCC4B3.10c" ; note "mRNA from SPD240" ;
chromosome3 GeneDB CDS_parts 1160411 1161080 . + . mRNA SPCC4B3.09c ; db_xref "SPD:07/07F11" ; systematic_id "SPCC4B3.09c" ; colour "7" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL068W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC4B3.09c" ; product "mitochondrial ribosomal protein subunit L12 (predicted)" ;
chromosome3 GeneDB CDS 1160411 1160544 . + . mRNA SPCC4B3.09c ; colour "7" ;
chromosome3 GeneDB CDS 1160594 1161080 . + . mRNA SPCC4B3.09c ; colour "7" ;
chromosome3 GeneDB CDS_parts 1161336 1161992 . - . mRNA SPCC4B3.08 ; systematic_id "SPCC4B3.08" ; colour "7" ; gene "SPCC4B3.08" ; Alias "lsg1" ; db_xref "SPD:07/07F01" ; GO "GO:0032806; carboxy-terminal domain protein kinase complex
GO:0005634; nucleus
GO:0005509; calcium ion binding
GO:0031124; mRNA 3' end processing
GO:0045903; positive regulation of translational fidelity
GO:0006468; protein amino acid phosphorylation
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible false positive domain; qualifier=EF_hand; cv=warning; date=19700101 ||| term=orthologous to S. cerevisiae YML112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsg1" ; product "Lsk1 complex gamma subunit (predicted)" ;
chromosome3 GeneDB CDS 1161336 1161992 . - . mRNA SPCC4B3.08 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1161991 1162216 . - . mRNA SPCC4B3.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.08" ; systematic_id "SPCC4B3.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1162657 1162868 . - . mRNA SPCC4B3.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.07" ; systematic_id "SPCC4B3.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1162869 1164050 . - . mRNA SPCC4B3.07 ; systematic_id "SPCC4B3.07" ; colour "2" ; gene "SPCC4B3.07" ; Alias "nro1" ; db_xref "SPD:18/18G04" ; GO "GO:0005643; nuclear pore
GO:0005634; nucleus
GO:0006913; nucleocytoplasmic transport
GO:0045893; positive regulation of transcription, DNA-dependent
GO:0005634; nucleus
GO:0006994; positive regulation of sterol regulatory element binding protein target gene transcription involved in sterol depletion response
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YOR051C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; cv=phenotype; qualifier=deletion; db_xref=PMID:19158663; date=20090428" ; primary_name "nro1" ; product "nuclear pore complex associated protein" ;
chromosome3 GeneDB CDS 1162869 1164050 . - . mRNA SPCC4B3.07 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1164049 1164086 . - . mRNA SPCC4B3.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.07" ; systematic_id "SPCC4B3.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 1164174 1164978 . + . misc_RNA SPNCRNA.486 ; db_xref "PMID:18488015" ; synonym "SPNG2370" ; systematic_id "SPNCRNA.486" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 1165188 1165790 . + . mRNA SPCC4B3.06c ; db_xref "SPD:06/06G01" ; systematic_id "SPCC4B3.06c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR011W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0008752; FMN reductase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPCC4B3.06c" ; product "NADPH-dependent FMN reductase (predicted)" ; EC_number "1.5.1.29" ;
chromosome3 GeneDB CDS 1165188 1165790 . + . mRNA SPCC4B3.06c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 1166506 1166570 . + . mRNA SPCC4B3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.05c" ; systematic_id "SPCC4B3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1166571 1167837 . + . mRNA SPCC4B3.05c ; systematic_id "SPCC4B3.05c" ; colour "7" ; gene "SPCC4B3.05c ||| hem12" ; Alias "hem12" ; db_xref "SPD:44/44B02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060721 ||| term=orthologous to S. cerevisiae YDR047W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004853; uroporphyrinogen decarboxylase activity
GO:0006783; heme biosynthesis" ; primary_name "hem12" ; product "uroporphyrinogen decarboxylase Hem12 (predicted)" ; EC_number "4.1.1.37" ; reserved_name "hem12" ;
chromosome3 GeneDB CDS 1166571 1166604 . + . mRNA SPCC4B3.05c ; colour "7" ;
chromosome3 GeneDB CDS 1166662 1166696 . + . mRNA SPCC4B3.05c ; colour "7" ;
chromosome3 GeneDB CDS 1166743 1166767 . + . mRNA SPCC4B3.05c ; colour "7" ;
chromosome3 GeneDB CDS 1166815 1167323 . + . mRNA SPCC4B3.05c ; colour "7" ;
chromosome3 GeneDB CDS 1167373 1167837 . + . mRNA SPCC4B3.05c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1167838 1167990 . + . mRNA SPCC4B3.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.05c" ; systematic_id "SPCC4B3.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1168540 1168729 . + . mRNA SPCC4B3.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.04c" ; systematic_id "SPCC4B3.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1168730 1172786 . + . mRNA SPCC4B3.04c ; systematic_id "SPCC4B3.04c" ; colour "7" ; gene "nte1 ||| SPCC4B3.04c" ; Alias "nte1" ; db_xref "SPD:30/30F02" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005783; endoplasmic reticulum
GO:0004091; carboxylesterase activity
GO:0004622; lysophospholipase activity
GO:0044242; cellular lipid catabolic process
GO:0034638; phosphatidylcholine catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nte1" ; product "lysophospholipase (predicted)" ;
chromosome3 GeneDB CDS 1168730 1168929 . + . mRNA SPCC4B3.04c ; colour "7" ;
chromosome3 GeneDB CDS 1168979 1169153 . + . mRNA SPCC4B3.04c ; colour "7" ;
chromosome3 GeneDB CDS 1169211 1172786 . + . mRNA SPCC4B3.04c ; colour "7" ;
chromosome3 GeneDB CDS_parts 1173490 1175529 . + . mRNA SPCC4B3.03c ; db_xref "SPD:46/46D05" ; systematic_id "SPCC4B3.03c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0007005; mitochondrion organization
GO:0030026; cellular manganese ion homeostasis" ; gene "SPCC4B3.03c" ; product "mitochondrial morphology protein (predicted)" ;
chromosome3 GeneDB CDS 1173490 1175529 . + . mRNA SPCC4B3.03c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1175530 1175650 . + . mRNA SPCC4B3.03c ; ID "SPCC4B3.03c" ; systematic_id "SPCC4B3.03c" ; note "mRNA from spc00429" ;
chromosome3 GeneDB misc_RNA 1175846 1175963 . - . misc_RNA SPNCRNA.120 ; systematic_id "SPNCRNA.120" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.120" ; product "non-coding RNA (predicted)" ; note "mRNA from spc06392" ;
chromosome3 GeneDB LTR 1176250 1176592 . - . LTR unknown_970 ; note "TF2 LTR" ;
chromosome3 GeneDB 5'-UTR 1176681 1176758 . + . mRNA SPCC4B3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.02c" ; systematic_id "SPCC4B3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1176759 1177404 . + . mRNA SPCC4B3.02c ; db_xref "SPD:07/07D06" ; systematic_id "SPCC4B3.02c" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006895; Golgi to endosome transport
GO:0006886; intracellular protein transport
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR292W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC4B3.02c" ; product "Golgi transport protein Got1 (predicted)" ;
chromosome3 GeneDB CDS 1176759 1176780 . + . mRNA SPCC4B3.02c ; colour "7" ;
chromosome3 GeneDB CDS 1176826 1176872 . + . mRNA SPCC4B3.02c ; colour "7" ;
chromosome3 GeneDB CDS 1176953 1176997 . + . mRNA SPCC4B3.02c ; colour "7" ;
chromosome3 GeneDB CDS 1177129 1177404 . + . mRNA SPCC4B3.02c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1177405 1177726 . + . mRNA SPCC4B3.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.02c" ; systematic_id "SPCC4B3.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1177837 1177871 . - . mRNA SPCC4B3.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4B3.01" ; systematic_id "SPCC4B3.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1177872 1178825 . - . mRNA SPCC4B3.01 ; systematic_id "SPCC4B3.01" ; colour "7" ; gene "SPCC4B3.01 ||| SPCP25A2.01c" ; Alias "tum1" ; db_xref "SPD:13/13E02" ; synonym "SPCP25A2.01c" ; controlled_curation "term=orthologous to S. cerevisiae YOR251C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=human TST and MTST ortholog; date=20100728" ; GO "GO:0004792; thiosulfate sulfurtransferase activity
GO:0005737; cytoplasm
GO:0002143; wobble position uridine thiolation" ; primary_name "tum1" ; product "thiosulfate sulfurtransferase, involved in tRNA wobble position thiolation Tum1 (predicted)" ;
chromosome3 GeneDB CDS 1177872 1178489 . - . mRNA SPCC4B3.01 ; colour "7" ;
chromosome3 GeneDB CDS 1178547 1178825 . - . mRNA SPCC4B3.01 ; colour "7" ;
chromosome3 GeneDB misc_feature 1178184 1178291 . + . misc_feature unknown_971 ; note "nominal overlap between plasmid p25A2 and c4B3" ;
chromosome3 GeneDB misc_feature 1178490 1178501 . - . misc_feature unknown_972 ; colour "6" ; note "ctaatattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1178541 1178546 . - . misc_feature unknown_973 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 1179636 1182557 . - . mRNA SPCP25A2.02c ; systematic_id "SPCP25A2.02c" ; colour "2" ; gene "rhp26 ||| SPCP25A2.02c" ; Alias "rhp26" ; db_xref "SPD:29/29G03" ; GO "GO:0008094; DNA-dependent ATPase activity
GO:0006283; transcription-coupled nucleotide- excision repair
GO:0005634; nucleus
GO:0004003; ATP-dependent DNA helicase activity
GO:0005524; ATP binding
GO:0006283; transcription-coupled nucleotide- excision repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=disease associated, Cockayne syndrome; date=19700101 ||| term=human ERCC6 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YJR035W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, ubiquitinated; cv=pt_mod; evidence=IDA; db_xref=PMID:18794354; date=20090909" ; primary_name "rhp26" ; product "SNF2 family helicase Rhp26" ;
chromosome3 GeneDB CDS 1179636 1182557 . - . mRNA SPCP25A2.02c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1182556 1182622 . - . mRNA SPCP25A2.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP25A2.02c" ; systematic_id "SPCP25A2.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1182787 1182795 . + . mRNA SPCP25A2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP25A2.03" ; systematic_id "SPCP25A2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1182796 1185168 . + . mRNA SPCP25A2.03 ; db_xref "SPD:28/28E03" ; systematic_id "SPCP25A2.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human THOC1 ortholog; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0000347; THO complex
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006406; mRNA export from nucleus" ; gene "SPCP25A2.03" ; product "THO complex subunit (predicted)" ;
chromosome3 GeneDB CDS 1182796 1182990 . + . mRNA SPCP25A2.03 ; colour "7" ;
chromosome3 GeneDB CDS 1183050 1183940 . + . mRNA SPCP25A2.03 ; colour "7" ;
chromosome3 GeneDB CDS 1183996 1185168 . + . mRNA SPCP25A2.03 ; colour "7" ;
chromosome3 GeneDB misc_feature 1182991 1182996 . + . misc_feature unknown_974 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1183029 1183049 . + . misc_feature unknown_975 ; colour "6" ; note "ctaattgttattttcgtgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1183941 1183946 . + . misc_feature unknown_976 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1183985 1183995 . + . misc_feature unknown_977 ; colour "6" ; note "ctaatatgtag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1185169 1185261 . + . mRNA SPCP25A2.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP25A2.03" ; systematic_id "SPCP25A2.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 1185495 1185593 . + . misc_feature unknown_978 ; note "nominal overlap with cosmid SPCC550, EM:AL023592 S.pombe chromosome 3" ;
chromosome3 GeneDB CDS_parts 1185888 1186167 . - . mRNA SPCC550.01c ; db_xref "SPD:42/42A02" ; systematic_id "SPCC550.01c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CHCH domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR218C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005758; mitochiondrial intermembrane space
GO:0033108; mitochondrial respiratory chain complex assembly" ; gene "SPCC550.01c" ; product "mitochondrial respiratory chain complex assembly protein (predicted)" ;
chromosome3 GeneDB CDS 1185888 1185971 . - . mRNA SPCC550.01c ; colour "7" ;
chromosome3 GeneDB CDS 1186018 1186167 . - . mRNA SPCC550.01c ; colour "7" ;
chromosome3 GeneDB misc_feature 1185972 1185990 . - . misc_feature unknown_979 ; colour "6" ; note "ctaattctgatatttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1186012 1186017 . - . misc_feature unknown_980 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 1186393 1187568 . - . mRNA SPCC550.02c ; systematic_id "SPCC550.02c" ; colour "2" ; gene "cwf5 ||| ecm2 ||| SPCC550.02c" ; Alias "cwf5" ; db_xref "SPD:18/18F08" ; synonym "ecm2" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YBR065C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf5" ; product "RNA-binding protein Cwf5" ;
chromosome3 GeneDB CDS 1186393 1186824 . - . mRNA SPCC550.02c ; colour "2" ;
chromosome3 GeneDB CDS 1186885 1187241 . - . mRNA SPCC550.02c ; colour "2" ;
chromosome3 GeneDB CDS 1187293 1187568 . - . mRNA SPCC550.02c ; colour "2" ;
chromosome3 GeneDB misc_feature 1186825 1186835 . - . misc_feature unknown_981 ; colour "6" ; note "ctaacatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1186879 1186884 . - . misc_feature unknown_982 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1187242 1187257 . - . misc_feature unknown_983 ; colour "6" ; note "ctaacgttccatgaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1187287 1187292 . - . misc_feature unknown_984 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 1187735 1191376 . - . mRNA SPCC550.03c ; db_xref "SPD:39/39B10" ; systematic_id "SPCC550.03c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005737; cytoplasm
GO:0006402; mRNA catabolism
GO:0006417; regulation of translation
GO:0003724; RNA helicase activity
GO:0055087; Ski complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YLR398C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC550.03c" ; product "Ski complex RNA helicase Ski2 (predicted)" ;
chromosome3 GeneDB CDS 1187735 1191376 . - . mRNA SPCC550.03c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1191695 1191936 . - . mRNA SPCC550.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.04c" ; systematic_id "SPCC550.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1191937 1193071 . - . mRNA SPCC550.04c ; systematic_id "SPCC550.04c" ; colour "7" ; gene "gpi2 ||| SPCC550.04c" ; Alias "gpi2" ; db_xref "SPD:17/17H05" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0000506; glycosylphosphatidylinositol-N- acetylglu cosaminyltransferase( GPI-GnT)complex
GO:0017176; phosphatidylinositol N- acetylglucosaminyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL076W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gpi2" ; product "pig-C (predicted)" ;
chromosome3 GeneDB CDS 1191937 1191994 . - . mRNA SPCC550.04c ; colour "7" ;
chromosome3 GeneDB CDS 1192051 1192220 . - . mRNA SPCC550.04c ; colour "7" ;
chromosome3 GeneDB CDS 1192267 1192414 . - . mRNA SPCC550.04c ; colour "7" ;
chromosome3 GeneDB CDS 1192473 1193071 . - . mRNA SPCC550.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 1191995 1192019 . - . misc_feature unknown_985 ; colour "6" ; note "ctaaattctcacatatatatcttag, splice branch and accepto r" ;
chromosome3 GeneDB misc_feature 1192045 1192050 . - . misc_feature unknown_986 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1192221 1192234 . - . misc_feature unknown_987 ; colour "6" ; note "ttaaccaattacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1192261 1192266 . - . misc_feature unknown_988 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1192415 1192434 . - . misc_feature unknown_989 ; colour "6" ; note "ctaattatttttctttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1192467 1192472 . - . misc_feature unknown_990 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1193070 1193182 . - . mRNA SPCC550.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.04c" ; systematic_id "SPCC550.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1194005 1194196 . + . mRNA SPCC550.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.05" ; systematic_id "SPCC550.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1194197 1194943 . + . mRNA SPCC550.05 ; systematic_id "SPCC550.05" ; colour "2" ; gene "nse1 ||| SPCC550.05" ; Alias "nse1" ; db_xref "SPD:06/06H04" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0006281; DNA repair
GO:0000724; double-strand break repair via homologous recombination
GO:0006311; meiotic gene conversion
GO:0007131; meiotic recombination
GO:0007131; meiotic recombination
GO:0016567; protein ubiquitination
GO:0048478; replication fork protection" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12966087; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:12966087; date=20100727 ||| term=zf-C3HC4 type (RING finger); evidence=TAS; db_xref=PMID:15331764; date=20060504 ||| term=ubiquitin-protein ligase E3; evidence=TAS; db_xref=PMID:15331764; date=20060504 ||| term=orthologous to S. cerevisiae YLR007W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:12966087; date=20050426" ; primary_name "nse1" ; product "Smc5-6 complex non-SMC subunit 1" ;
chromosome3 GeneDB CDS 1194197 1194775 . + . mRNA SPCC550.05 ; colour "2" ;
chromosome3 GeneDB CDS 1194824 1194943 . + . mRNA SPCC550.05 ; colour "2" ;
chromosome3 GeneDB intron 1194776 1194823 . + . intron SPCC550.05 ; db_xref "PMID:1296608" ; systematic_id "SPCC550.05" ; note "confirmed" ;
chromosome3 GeneDB 3'-UTR 1195051 1195417 . - . mRNA SPCC550.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.06c" ; systematic_id "SPCC550.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1195418 1195732 . - . mRNA SPCC550.06c ; systematic_id "SPCC550.06c" ; colour "7" ; gene "hsp10 ||| SPCC550.06c" ; Alias "hsp10" ; db_xref "SPD:01/01F06" ; GO "GO:0006457; protein folding
GO:0030150; protein import into mitochondrial matrix
GO:0005759; mitochondrial matrix
GO:0051082; unfolded protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hsp10" ; product "mitochondrial heat shock protein Hsp10 (predicted)" ;
chromosome3 GeneDB CDS 1195418 1195732 . - . mRNA SPCC550.06c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1195733 1195816 . - . mRNA SPCC550.06c ; ID "SPCC550.06c" ; systematic_id "SPCC550.06c" ; note "mRNA from AU009544" ;
chromosome3 GeneDB LTR 1195985 1196059 . - . LTR unknown_991 ; note "degraded Tf2-type LTR" ;
chromosome3 GeneDB misc_feature 1196131 1196481 . - . misc_feature Tf2-fragment5 ; systematic_id "Tf2-fragment5" ; note "LTR-retrotransposon, fragment" ;
chromosome3 GeneDB CDS_parts 1198190 1199791 . + . mRNA SPCC550.07 ; db_xref "SPD:25/25G01" ; systematic_id "SPCC550.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR242W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC550.07" ; product "acetamidase (predicted)" ;
chromosome3 GeneDB CDS 1198190 1199791 . + . mRNA SPCC550.07 ; colour "10" ;
chromosome3 GeneDB CDS_parts 1200989 1201732 . + . mRNA SPCC550.08 ; db_xref "SPD:09/09A09" ; systematic_id "SPCC550.08" ; colour "10" ; GO "GO:0008080; N-acetyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR012W and YDR391C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPCC550.08" ; product "N-acetyltransferase (predicted)" ;
chromosome3 GeneDB CDS 1200989 1201732 . + . mRNA SPCC550.08 ; colour "10" ;
chromosome3 GeneDB 5'-UTR 1202257 1202534 . + . mRNA SPCC550.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.09" ; systematic_id "SPCC550.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1202535 1204142 . + . mRNA SPCC550.09 ; db_xref "SPD:25/25G10" ; systematic_id "SPCC550.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR168W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "7" ; gene "SPCC550.09" ; product "peroxin Pex32 (predicted)" ;
chromosome3 GeneDB CDS 1202535 1204142 . + . mRNA SPCC550.09 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1204143 1204236 . + . mRNA SPCC550.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.09" ; systematic_id "SPCC550.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 1204464 1204881 . + . misc_RNA SPNCRNA.487 ; db_xref "PMID:18488015" ; synonym "SPNG2378" ; systematic_id "SPNCRNA.487" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 1205004 1206506 . + . mRNA SPCC550.10 ; systematic_id "SPCC550.10" ; colour "2" ; gene "meu8 ||| SPCC550.10" ; Alias "meu8" ; db_xref "SPD:24/24D05" ; GO "GO:0007126; meiosis
GO:0016620; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824" ; primary_name "meu8" ; product "aldehyde dehydrogenase Meu8 (predicted)" ;
chromosome3 GeneDB CDS 1205004 1206506 . + . mRNA SPCC550.10 ; colour "2" ;
chromosome3 GeneDB tRNA 1206747 1206819 . - . tRNA SPCTRNAVAL.11 ; systematic_id "SPCTRNAVAL.11" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033410; TAC codon-amino acid adaptor activity" ; gene "SPCTRNAVAL.11" ; product "tRNA Valine" ; note "tRNA Val anticodon TAC, Cove score 76.36" ;
chromosome3 GeneDB LTR 1207147 1207503 . + . LTR unknown_992 ; note "Tf1-type LTR" ;
chromosome3 GeneDB 5'-UTR 1207623 1207662 . + . mRNA SPCC550.11 ; ID "SPCC550.11" ; systematic_id "SPCC550.11" ; note "mRNA from AU010868" ;
chromosome3 GeneDB CDS_parts 1207663 1211089 . + . mRNA SPCC550.11 ; db_xref "SPD:48/48C05" ; systematic_id "SPCC550.11" ; colour "7" ; GO "GO:0006606; protein import into nucleus
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008565; protein transporter activity
GO:0006406; mRNA export from nucleus
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YJR132W and YDR395W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC550.11" ; product "karyopherin (predicted)" ;
chromosome3 GeneDB CDS 1207663 1207825 . + . mRNA SPCC550.11 ; colour "7" ;
chromosome3 GeneDB CDS 1208163 1211089 . + . mRNA SPCC550.11 ; colour "7" ;
chromosome3 GeneDB misc_feature 1207826 1207831 . + . misc_feature unknown_993 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 1207826 1208162 . + . intron SPCC550.11 ; systematic_id "SPCC550.11" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1208144 1208162 . + . misc_feature unknown_994 ; colour "6" ; note "ctaacattattgaatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1211090 1211442 . + . mRNA SPCC550.11 ; ID "SPCC550.11" ; systematic_id "SPCC550.11" ; note "mRNA from AU008058" ;
chromosome3 GeneDB 5'-UTR 1211990 1212007 . + . mRNA SPCC550.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.12" ; systematic_id "SPCC550.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1212008 1213356 . + . mRNA SPCC550.12 ; systematic_id "SPCC550.12" ; colour "2" ; gene "arp6 ||| SPCC550.12" ; Alias "arp6" ; db_xref "SPD:20/20H04" ; GO "GO:0000784; nuclear chromosome, telomeric region
GO:0006348; chromatin silencing at telomere
GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR085C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arp6" ; product "actin-like protein Arp6" ;
chromosome3 GeneDB CDS 1212008 1212087 . + . mRNA SPCC550.12 ; colour "2" ;
chromosome3 GeneDB CDS 1212159 1212273 . + . mRNA SPCC550.12 ; colour "2" ;
chromosome3 GeneDB CDS 1212346 1213356 . + . mRNA SPCC550.12 ; colour "2" ;
chromosome3 GeneDB misc_feature 1212088 1212093 . + . misc_feature unknown_995 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1212142 1212158 . + . misc_feature unknown_996 ; colour "6" ; note "ctaacgatagtttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1212274 1212279 . + . misc_feature unknown_997 ; colour "6" ; note "gtacag, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1212333 1212345 . + . misc_feature unknown_998 ; colour "6" ; note "ctaatactagtag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1213357 1213642 . + . mRNA SPCC550.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.12" ; systematic_id "SPCC550.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1214010 1214445 . + . mRNA SPCC550.13 ; ID "SPCC550.13" ; systematic_id "SPCC550.13" ; note "mRNA from AB028068" ;
chromosome3 GeneDB CDS_parts 1214446 1216083 . + . mRNA SPCC550.13 ; systematic_id "SPCC550.13" ; colour "2" ; gene "dfp1 ||| rad35 ||| him1 ||| SPCC550.13" ; Alias "dfp1" ; db_xref "SPD:26/26B07" ; synonym "rad35 ||| him1" ; GO "GO:0031431; Dbf4-dependent protein kinase complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0019887; protein kinase regulator activity
GO:0000077; DNA damage checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0045859; regulation of protein kinase activity
GO:0048478; replication fork protection
GO:0006974; response to DNA damage stimulus
GO:0007165; signal transduction
GO:0007064; mitotic sister chromatid cohesion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10409743; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|low_penetrance; db_xref=PMID:10409743; date=20100709 ||| term=phenotype, nuclear morphology defects; qualifier=deletion; db_xref=PMID:10409743; date=20100709 ||| term=phenotype, cut; db_xref=PMID:10409743; date=20100727 ||| term=BRCT domain; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-DBF type; date=19700101 ||| term=gene expression, expression cell cycle regulated; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDR052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; primary_name "dfp1" ; product "Hsk1-Dfp1 kinase complex regulatory subunit Dfp1" ;
chromosome3 GeneDB CDS 1214446 1216083 . + . mRNA SPCC550.13 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1216084 1216438 . + . mRNA SPCC550.13 ; ID "SPCC550.13" ; systematic_id "SPCC550.13" ; note "mRNA from AB028068" ;
chromosome3 GeneDB 5'-UTR 1216887 1217177 . + . mRNA SPCC550.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.14" ; systematic_id "SPCC550.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1217178 1221017 . + . mRNA SPCC550.14 ; systematic_id "SPCC550.14" ; colour "2" ; gene "SPCC550.14 ||| vgl1" ; db_xref "SPD:39/39D01" ; Alias "vgl1" ; GO "GO:0003677; DNA binding
GO:0003723; RNA binding
GO:0006342; chromatin silencing
GO:0008298; intracellular mRNA localization
GO:0005783; endoplasmic reticulum
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0034605; cellular response to heat
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=KH domain; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; evidence=ISS; qualifier=predicted; date=19700101 ||| term=protein sequence feature, NES; cv=sequence_feature; evidence=ISS; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YJL080C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human HDLBP ortholog; date=20100622" ; primary_name "vgl1" ; product "vigilin (predicted)" ;
chromosome3 GeneDB CDS 1217178 1221017 . + . mRNA SPCC550.14 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1221018 1221340 . + . mRNA SPCC550.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.14" ; systematic_id "SPCC550.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1221450 1221615 . - . mRNA SPCC550.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.15c" ; systematic_id "SPCC550.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1221616 1223007 . - . mRNA SPCC550.15c ; db_xref "SPD:44/44D12" ; systematic_id "SPCC550.15c" ; colour "7" ; GO "GO:0042273; ribosomal large subunit biogenesis and assembly
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YLR387C and YBR267W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC550.15c" ; product "ribosome biogenesis protein (predicted)" ;
chromosome3 GeneDB CDS 1221616 1223007 . - . mRNA SPCC550.15c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1223006 1223156 . - . mRNA SPCC550.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC550.15c" ; systematic_id "SPCC550.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1223686 1226925 . - . mRNA SPCC4E9.01c ; systematic_id "SPCC4E9.01c" ; colour "2" ; gene "rec11 ||| SPCC4E9.01c ||| SPCC550.16c" ; Alias "rec11" ; db_xref "SPD:48/48B04" ; synonym "SPCC550.16c" ; GO "GO:0007131; meiotic recombination
GO:0030893; meiotic cohesin complex
GO:0051177; meiotic sister chromatid cohesion
GO:0051177; meiotic sister chromatid cohesion
GO:0045143; homologous chromosome segregation
GO:0042138; meiotic DNA double-strand break formation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, region specific activator of recombination; db_xref=PMID:8299939; cv=misc; date=19700101 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=related to S. pombe psc3; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rec11" ; product "meiotic cohesin complex subunit Rec11" ;
chromosome3 GeneDB CDS 1223686 1224000 . - . mRNA SPCC4E9.01c ; colour "2" ;
chromosome3 GeneDB CDS 1224088 1224373 . - . mRNA SPCC4E9.01c ; colour "2" ;
chromosome3 GeneDB CDS 1224417 1224832 . - . mRNA SPCC4E9.01c ; colour "2" ;
chromosome3 GeneDB CDS 1224870 1225652 . - . mRNA SPCC4E9.01c ; colour "2" ;
chromosome3 GeneDB CDS 1225710 1225854 . - . mRNA SPCC4E9.01c ; colour "2" ;
chromosome3 GeneDB CDS 1225899 1226248 . - . mRNA SPCC4E9.01c ; colour "2" ;
chromosome3 GeneDB CDS 1226298 1226396 . - . mRNA SPCC4E9.01c ; colour "2" ;
chromosome3 GeneDB CDS 1226482 1226594 . - . mRNA SPCC4E9.01c ; colour "2" ;
chromosome3 GeneDB CDS 1226661 1226925 . - . mRNA SPCC4E9.01c ; colour "2" ;
chromosome3 GeneDB misc_feature 1223871 1223969 . + . misc_feature unknown_999 ; note "nominal overlap with cosmid SPCC4E9 and cosmid SPCC550" ;
chromosome3 GeneDB misc_feature 1224001 1224014 . - . misc_feature unknown_1000 ; colour "6" ; note "ctaactataagcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1224082 1224087 . - . misc_feature unknown_1001 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1224374 1224386 . - . misc_feature unknown_1002 ; colour "6" ; note "ctaactttacaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1224411 1224416 . - . misc_feature unknown_1003 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1224833 1224844 . - . misc_feature unknown_1004 ; colour "6" ; note "ctaaacctctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1224864 1224869 . - . misc_feature unknown_1005 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1225653 1225668 . - . misc_feature unknown_1006 ; colour "6" ; note "ctaactgaacgtatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1225704 1225709 . - . misc_feature unknown_1007 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1225855 1225870 . - . misc_feature unknown_1008 ; colour "6" ; note "ctaacctttttactag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1225893 1225898 . - . misc_feature unknown_1009 ; colour "6" ; note "gttggc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1226249 1226268 . - . misc_feature unknown_1010 ; colour "6" ; note "cttaccatacatatcgctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1226292 1226297 . - . misc_feature unknown_1011 ; colour "6" ; note "gtgtgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1226397 1226407 . - . misc_feature unknown_1012 ; colour "6" ; note "ctaattcatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1226476 1226481 . - . misc_feature unknown_1013 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1226595 1226613 . - . misc_feature unknown_1014 ; colour "6" ; note "ctaacaagcatacgaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1226655 1226660 . - . misc_feature unknown_1015 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1227227 1227544 . + . mRNA SPCC4E9.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4E9.02" ; systematic_id "SPCC4E9.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 1227435 1228475 . + . misc_feature unknown_1016 ; note "nominal overlap with cosmid SPCC645 and cosmid SPCC4E9" ;
chromosome3 GeneDB CDS_parts 1227545 1228792 . + . mRNA SPCC4E9.02 ; systematic_id "SPCC4E9.02" ; colour "2" ; gene "cig1 ||| SPCC4E9.02 ||| SPCC645.01" ; Alias "cig1" ; db_xref "SPD:19/19H11" ; synonym "SPCC645.01" ; GO "GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0007346; regulation of progression through mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=B-type cyclin; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YDL155W and YLR210W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cig1" ; product "cyclin Cig1" ;
chromosome3 GeneDB CDS 1227545 1228792 . + . mRNA SPCC4E9.02 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1228793 1229041 . + . mRNA SPCC4E9.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4E9.02" ; systematic_id "SPCC4E9.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1229646 1229723 . + . mRNA SPCC645.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.02" ; systematic_id "SPCC645.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1229724 1230290 . + . mRNA SPCC645.02 ; systematic_id "SPCC645.02" ; colour "7" ; gene "SPCC645.02 ||| gep4" ; Alias "gep4" ; db_xref "SPD:06/06A02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR100C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0032049; cardiolipin biosynthetic process
GO:0005759; mitochondrial matrix
GO:0006655; phosphatidylglycerol metabolism
GO:0008962; phosphatidylglycerolphosphate phosphatase activity" ; primary_name "gep4" ; product "mitochondrial matrix PGP phosphatase involved in cardiolipin biosynthesis Gep4 (predicted)" ;
chromosome3 GeneDB CDS 1229724 1230290 . + . mRNA SPCC645.02 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1230291 1230429 . + . mRNA SPCC645.02 ; ID "SPCC645.02" ; systematic_id "SPCC645.02" ; note "mRNA from AU006489" ;
chromosome3 GeneDB 3'-UTR 1230674 1231041 . - . mRNA SPCC645.03c ; ID "SPCC645.03c" ; systematic_id "SPCC645.03c" ; note "mRNA from SPD209" ;
chromosome3 GeneDB CDS_parts 1231042 1231702 . - . mRNA SPCC645.03c ; systematic_id "SPCC645.03c" ; colour "2" ; gene "isa1 ||| SPCC645.03c" ; Alias "isa1" ; db_xref "SPD:42/42G08" ; GO "GO:0005759; mitochondrial matrix
GO:0016226; iron-sulfur cluster assembly
GO:0006790; sulfur metabolism
GO:0006879; iron ion homeostasis
GO:0009102; biotin biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by CCAAT complex; db_xref=PMID:16963626; evidence=IMP; cv=gene_ex; date=20070516 ||| term=gene expression, promoter contains CCAAT element; db_xref=PMID:16963626; evidence=IMP; cv=gene_ex; date=20070516 ||| term=orthologous to S. cerevisiae YLL027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "isa1" ; product "mitochondrial iron-sulfur protein Isa1" ;
chromosome3 GeneDB CDS 1231042 1231359 . - . mRNA SPCC645.03c ; colour "2" ;
chromosome3 GeneDB CDS 1231448 1231702 . - . mRNA SPCC645.03c ; colour "2" ;
chromosome3 GeneDB misc_feature 1231360 1231376 . - . misc_feature unknown_1017 ; colour "6" ; note "ttaactagtttctttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1231360 1231447 . - . intron SPCC645.03c ; systematic_id "SPCC645.03c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1231442 1231447 . - . misc_feature unknown_1018 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1231703 1231827 . - . mRNA SPCC645.03c ; ID "SPCC645.03c" ; systematic_id "SPCC645.03c" ; note "mRNA from AU008368" ;
chromosome3 GeneDB 5'-UTR 1232122 1232184 . + . mRNA SPCC645.04 ; ID "SPCC645.04" ; systematic_id "SPCC645.04" ; note "mRNA from AU009867" ;
chromosome3 GeneDB CDS_parts 1232185 1233171 . + . mRNA SPCC645.04 ; systematic_id "SPCC645.04" ; colour "2" ; gene "nse3 ||| SPCC645.04" ; Alias "nse3" ; db_xref "SPD:14/14D01" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0000706; meiotic DNA double-strand break processing
GO:0000070; mitotic sister chromatid segregation
GO:0048478; replication fork protection" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15331764; date=19700101 ||| term=modification, sumoylated; cv=pt_mod; db_xref=PMID:15601841; date=19700101 ||| term=orthologous to S. cerevisiae YDR288W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:15331764; date=20100708" ; primary_name "nse3" ; product "Smc5-6 complex non-SMC subunit Nse3" ;
chromosome3 GeneDB CDS 1232185 1233171 . + . mRNA SPCC645.04 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1233172 1233221 . + . mRNA SPCC645.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.04" ; systematic_id "SPCC645.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1233276 1233449 . - . mRNA SPCC645.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.05c" ; systematic_id "SPCC645.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1233450 1238030 . - . mRNA SPCC645.05c ; systematic_id "SPCC645.05c" ; colour "2" ; db_xref "SPD:30/30H12" ; Alias "myo2" ; synonym "rng5" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:9415380; date=20100712 ||| term=phenotype, multinucleate; qualifier=overexpression; db_xref=PMID:9415380; date=20100712 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:9182664; date=20100712 ||| term=phenotype, multinucleate; qualifier=overexpression; db_xref=PMID:9182664; date=20100712 ||| term=phenotype, cell morphology, branched; qualifier=overexpression; db_xref=PMID:9182664; date=20100712 ||| term=phenotype, cell morphology, elongated dumbbell; qualifier=overexpression; db_xref=PMID:9182664; date=20100802 ||| term=IQ domain; date=19700101 ||| term=misc, functional septation initiation network required; db_xref=PMID:11739799; date=19700101 ||| term=orthologous to S. cerevisiae YHR023W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=human MYH9 and MYH11 ortholog; date=20100218 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:11739799; date=20090213 ||| term=modification, phosphorylated; residue=1444; cv=pt_mod; db_xref=PMID:15814401; date=20090213" ; GO "GO:0005826; contractile ring
GO:0016460; myosin II complex
GO:0005524; ATP binding
GO:0003779; actin binding
GO:0030899; calcium-dependent ATPase activity
GO:0000146; microfilament motor activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000915; cytokinesis, contractile ring formation
GO:0071520; actin filament bundle convergence involved in actomyosin contractile ring formation" ; primary_name "myo2" ; product "myosin II heavy chain" ;
chromosome3 GeneDB CDS 1233450 1238030 . - . mRNA SPCC645.05c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1238029 1238227 . - . mRNA SPCC645.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.05c" ; systematic_id "SPCC645.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1238885 1239384 . - . mRNA SPCC645.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.06c" ; systematic_id "SPCC645.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1239385 1243212 . - . mRNA SPCC645.06c ; systematic_id "SPCC645.06c" ; colour "2" ; db_xref "SPD:39/39C12" ; Alias "rgf3" ; synonym "lad1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15546915; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR425W; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; cv=gene_ex; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16291723; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=genome organization, divergently orientated to functionally related gene; date=20100427 ||| term=target is Rho1; qualifier=activates; db_xref=PMID:15546915; date=20100427" ; GO "; cell division site
; Rho guanyl-nucleotide exchange factor activity
GO:0005515; protein binding
GO:0051666; actin cortical patch localization
GO:0060624; regulation of ascospore wall 1,3-beta- glucan biosynthetic process
GO:0030994; primary cell septum catabolism
GO:0090334; regulation of 1,3-beta-glucan biosynthesis
GO:0035023; regulation of Rho protein signal transduction
GO:0035023; regulation of Rho protein signal transduction
GO:0010590; regulation of cell separation during cytokinesis
GO:0032319; regulation of Rho GTPase activity" ; primary_name "rgf3" ; product "RhoGEF Rgf3" ;
chromosome3 GeneDB CDS 1239385 1243212 . - . mRNA SPCC645.06c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1243211 1244000 . - . mRNA SPCC645.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.06c" ; systematic_id "SPCC645.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1245212 1245262 . + . mRNA SPCC645.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.07" ; systematic_id "SPCC645.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1245263 1249313 . + . mRNA SPCC645.07 ; systematic_id "SPCC645.07" ; colour "2" ; gene "rgf1 ||| SPCC645.07" ; Alias "rgf1" ; db_xref "SPD:30/30E12" ; GO "GO:0000935; barrier septum
GO:0051285; cell cortex of cell tip
GO:0030428; cell septum
GO:0051286; cell tip
GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0005515; protein binding
GO:0051666; actin cortical patch localization
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0035025; positive regulation of Rho protein signal transduction
GO:2000247; positive regulation of establishment or maintenance of bipolar cell polarity involved in cell shaping
GO:0090334; regulation of 1,3-beta-glucan biosynthesis
GO:0032319; regulation of Rho GTPase activity
GO:0008360; regulation of cell shape" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16291723; date=20061128 ||| term=pleckstrin homology domain; cv=protein_family; date=20061128 ||| term=orthologous to S. cerevisiae YGR070W and YLR371W; date=19700101 ||| term=human ARHGER12 ortholog; date=20100218 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Rho1; date=20100831 ||| term=genome organization, divergently orientated to functionally related gene; date=20100902" ; primary_name "rgf1" ; product "RhoGEF for Rho1, Rgf1" ;
chromosome3 GeneDB CDS 1245263 1247944 . + . mRNA SPCC645.07 ; colour "2" ;
chromosome3 GeneDB CDS 1247991 1249313 . + . mRNA SPCC645.07 ; colour "2" ;
chromosome3 GeneDB misc_feature 1247945 1247950 . + . misc_feature unknown_1019 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1247978 1247990 . + . misc_feature unknown_1020 ; colour "6" ; note "ctaactagtatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1249314 1249336 . + . mRNA SPCC645.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.07" ; systematic_id "SPCC645.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB polyA_site 1249494 1249494 . - . mRNA SPCC645.08c ; temporary_systematic_id "SPCC645.08c" ; note "EMBL:AB108422" ;
chromosome3 GeneDB 3'-UTR 1249494 1249556 . - . mRNA SPCC645.08c ; Alias "snd1" ; ID "SPCC645.08c" ; systematic_id "SPCC645.08c" ; primary_name "snd1" ; note "EMBL:AB108422" ;
chromosome3 GeneDB CDS_parts 1249557 1252193 . - . mRNA SPCC645.08c ; systematic_id "SPCC645.08c" ; colour "10" ; gene "SPCC645.08c ||| snd1" ; Alias "snd1" ; db_xref "SPD:38/38G02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=tudor domain; date=19700101 ||| term=human SND1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0030148; chromatin silencing by small RNA" ; primary_name "snd1" ; product "RNA-binding protein Snd1" ; reserved_name "snd1" ;
chromosome3 GeneDB CDS 1249557 1252193 . - . mRNA SPCC645.08c ; colour "10" ;
chromosome3 GeneDB tRNA 1253193 1253287 . + . tRNA SPCTRNASER.10 ; systematic_id "SPCTRNASER.10" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033453; GCT codon-amino acid adaptor activity" ; gene "SPCTRNASER.10" ; product "tRNA Serine" ; note "tRNA Ser anticodon GCT, Cove score 74.09" ;
chromosome3 GeneDB intron 1253232 1253242 . + . intron unknown_1021 ; note "intron tRNA Ser anticodon GCT" ;
chromosome3 GeneDB 5'-UTR 1254340 1254544 . + . mRNA SPCC645.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.09" ; systematic_id "SPCC645.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1254545 1254964 . + . mRNA SPCC645.09 ; systematic_id "SPCC645.09" ; colour "7" ; gene "SPCC645.09 ||| mrpl37" ; Alias "mrpl37" ; db_xref "SPD:03/03D04" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR268W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl37" ; product "mitochondrial ribosomal protein subunit L37 (predicted)" ;
chromosome3 GeneDB CDS 1254545 1254964 . + . mRNA SPCC645.09 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1254965 1255057 . + . mRNA SPCC645.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.09" ; systematic_id "SPCC645.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1255221 1255279 . + . mRNA SPCC645.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.10" ; systematic_id "SPCC645.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1255280 1256793 . + . mRNA SPCC645.10 ; db_xref "SPD:24/24E08" ; systematic_id "SPCC645.10" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER168C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004810; tRNA adenylyltransferase activity
GO:0006400; tRNA modification" ; gene "SPCC645.10" ; product "ATP(CTP) tRNA nucleotidyltransferase (predicted)" ; EC_number "2.7.7.25" ;
chromosome3 GeneDB CDS 1255280 1256590 . + . mRNA SPCC645.10 ; colour "7" ;
chromosome3 GeneDB CDS 1256650 1256793 . + . mRNA SPCC645.10 ; colour "7" ;
chromosome3 GeneDB misc_feature 1256591 1256596 . + . misc_feature unknown_1022 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1256635 1256649 . + . misc_feature unknown_1023 ; note "ctaacaattttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1256651 1256932 . - . mRNA SPCC645.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.11c" ; systematic_id "SPCC645.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1256794 1256816 . + . mRNA SPCC645.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.10" ; systematic_id "SPCC645.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1256933 1257493 . - . mRNA SPCC645.11c ; systematic_id "SPCC645.11c" ; colour "2" ; gene "mug117 ||| SPCC645.11c" ; note "possibly spliced to SPCC645.12c" ; Alias "mug117" ; db_xref "SPD:05/05H02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0045132; meiotic chromosome segregation
GO:0030437; sporulation (sensu Fungi)" ; primary_name "mug117" ; product "meiotically upregulated gene Mug117" ;
chromosome3 GeneDB CDS 1256933 1257493 . - . mRNA SPCC645.11c ; colour "2" ;
chromosome3 GeneDB CDS_parts 1257676 1258272 . - . mRNA SPCC645.12c ; db_xref "SPD:06/06F01" ; systematic_id "SPCC645.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=20101210 ||| term=species distribution, sequence orphan, uncharacterised; date=20101210 ||| term=species distribution, identified in S. pombe only; date=20101210 ||| term=species distribution, no apparnet orthologs; date=20101210 ||| term=warning, was previuosly annotated as Med9; date=20101210" ; colour "8" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1257676 1258272 . - . mRNA SPCC645.12c ; colour "8" ;
chromosome3 GeneDB 5'-UTR 1258271 1258411 . - . mRNA SPCC645.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.12c" ; systematic_id "SPCC645.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1258412 1258633 . + . mRNA SPCC645.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.13" ; systematic_id "SPCC645.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1258634 1260799 . + . mRNA SPCC645.13 ; db_xref "SPD:37/37G04" ; systematic_id "SPCC645.13" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003711; transcriptional elongation regulator activity
GO:0034244; negative regulation of transcription elongation from RNA polymerase II promoter
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-PHD finger; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC645.13" ; product "transcription elongation regulator (predicted)" ;
chromosome3 GeneDB CDS 1258634 1260799 . + . mRNA SPCC645.13 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1260800 1260995 . + . mRNA SPCC645.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.13" ; systematic_id "SPCC645.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1261338 1261605 . - . mRNA SPCC645.14c ; ID "SPCC645.14c" ; systematic_id "SPCC645.14c" ; note "mRNA from AU011299" ;
chromosome3 GeneDB CDS_parts 1261606 1263381 . - . mRNA SPCC645.14c ; systematic_id "SPCC645.14c" ; colour "2" ; gene "sti1 ||| SPCC645.14c" ; Alias "sti1" ; db_xref "SPD:36/36C06" ; GO "GO:0031072; heat shock protein binding
GO:0006457; protein folding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sti1" ; product "chaperone activator Sti1 (predicted)" ;
chromosome3 GeneDB CDS 1261606 1263381 . - . mRNA SPCC645.14c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1263380 1263525 . - . mRNA SPCC645.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC645.14c" ; systematic_id "SPCC645.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 1264067 1264170 . + . misc_feature unknown_1024 ; note "nominal overlap with cosmid SPCC645, EM:AL049498 S. pombe chromosome 3" ;
chromosome3 GeneDB 3'-UTR 1264462 1264729 . - . mRNA SPCC23B6.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC23B6.01c" ; systematic_id "SPCC23B6.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1264730 1266754 . - . mRNA SPCC23B6.01c ; db_xref "SPD:27/27E09" ; systematic_id "SPCC23B6.01c" ; colour "7" ; GO "GO:0008142; oxysterol binding
GO:0006696; ergosterol biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR001W and YKR003W and YOR237W and YPL145C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC23B6.01c" ; product "oxysterol binding protein (predicted)" ;
chromosome3 GeneDB CDS 1264730 1266005 . - . mRNA SPCC23B6.01c ; colour "7" ;
chromosome3 GeneDB CDS 1266340 1266417 . - . mRNA SPCC23B6.01c ; colour "7" ;
chromosome3 GeneDB CDS 1266512 1266543 . - . mRNA SPCC23B6.01c ; colour "7" ;
chromosome3 GeneDB CDS 1266671 1266754 . - . mRNA SPCC23B6.01c ; colour "7" ;
chromosome3 GeneDB misc_feature 1266006 1266026 . - . misc_feature unknown_1025 ; colour "6" ; note "ctaacctcttgaaaattctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1266334 1266339 . - . misc_feature unknown_1026 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1266418 1266435 . - . misc_feature unknown_1027 ; colour "6" ; note "ttgaccacatgttcgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1266506 1266511 . - . misc_feature unknown_1028 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1266544 1266562 . - . misc_feature unknown_1029 ; colour "6" ; note "ttaacgaatttttatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1266665 1266670 . - . misc_feature unknown_1030 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1266753 1266937 . - . mRNA SPCC23B6.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC23B6.01c" ; systematic_id "SPCC23B6.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1267982 1268068 . - . mRNA SPCC23B6.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC23B6.02c" ; systematic_id "SPCC23B6.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1268069 1268564 . - . mRNA SPCC23B6.02c ; db_xref "SPD:42/42B10" ; systematic_id "SPCC23B6.02c" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0030687; pre-ribosome large subunit precursor
GO:0000055; ribosomal large subunit export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization, undergoes nucleocytoplasmic shuttling; qualifier=predicted; date=20100608 ||| term=species distribution, conserved in Fungi; date=20100608 ||| term=orthologous to S. cerevisiae YAL059W; date=20100608" ; colour "7" ; gene "SPCC23B6.02c" ; product "pre-ribosomal factor (predicted)" ;
chromosome3 GeneDB CDS 1268069 1268172 . - . mRNA SPCC23B6.02c ; colour "7" ;
chromosome3 GeneDB CDS 1268249 1268564 . - . mRNA SPCC23B6.02c ; colour "7" ;
chromosome3 GeneDB misc_feature 1268173 1268192 . - . misc_feature unknown_1031 ; colour "6" ; note "ctaacggatcaccaacttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1268243 1268248 . - . misc_feature unknown_1032 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 1268750 1268996 . - . mRNA SPCC23B6.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC23B6.03c" ; systematic_id "SPCC23B6.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1268997 1277435 . - . mRNA SPCC23B6.03c ; systematic_id "SPCC23B6.03c" ; colour "2" ; gene "tel1 ||| SPCC23B6.03c" ; Alias "tel1" ; db_xref "SPD:34/34D04" ; GO "GO:0005515; protein binding
GO:0004672; protein kinase activity
GO:0016572; histone phosphorylation
GO:0000723; telomere maintenance
GO:0000077; DNA damage checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, ataxia- telangiectasia; date=20060801 ||| term=disease associated, cancer; date=20060801 ||| term=orthologous to S. cerevisiae YBL088C; date=19700101 ||| term=phosphoinositide 3-kinase family protein; date=20071228 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091123 ||| term=human ATM ortholog; date=20100217 ||| term=disease associated, cancer; date=20100217" ; primary_name "tel1" ; product "ATM checkpoint kinase" ;
chromosome3 GeneDB CDS 1268997 1277435 . - . mRNA SPCC23B6.03c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1277717 1277872 . - . mRNA SPCC23B6.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC23B6.04c" ; systematic_id "SPCC23B6.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1277873 1280899 . - . mRNA SPCC23B6.04c ; systematic_id "SPCC23B6.04c" ; colour "7" ; gene "SPCC23B6.04c" ; note "longer than orthologs, possibly a gene fusion" ; db_xref "SPD:29/29H01" ; GO "GO:0008526; phosphatidylinositol transporter activity
GO:0015914; phospholipid transport
GO:0006696; ergosterol biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL231C and YNL264C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824" ; product "sec14 cytosolic factor family (predicted)" ;
chromosome3 GeneDB CDS 1277873 1280899 . - . mRNA SPCC23B6.04c ; colour "7" ;
chromosome3 GeneDB CDS_parts 1281886 1282364 . - . mRNA SPCC23B6.05c ; systematic_id "SPCC23B6.05c" ; colour "2" ; gene "ssb3 ||| rpa3 ||| SPCC23B6.05c" ; Alias "ssb3" ; db_xref "SPD:04/04D10" ; synonym "rpa3" ; GO "GO:0003697; single-stranded DNA binding
GO:0006261; DNA replication
GO:0006310; DNA recombination
GO:0006281; DNA repair
GO:0005662; DNA replication factor A complex
GO:0000781; chromosome, telomeric region
GO:0006269; DNA replication, synthesis of RNA primer
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL173C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; primary_name "ssb3" ; product "DNA replication factor A subunit Ssb3" ;
chromosome3 GeneDB CDS 1281886 1281950 . - . mRNA SPCC23B6.05c ; colour "2" ;
chromosome3 GeneDB CDS 1282052 1282154 . - . mRNA SPCC23B6.05c ; colour "2" ;
chromosome3 GeneDB CDS 1282218 1282364 . - . mRNA SPCC23B6.05c ; colour "2" ;
chromosome3 GeneDB misc_feature 1281951 1281970 . - . misc_feature unknown_1033 ; colour "6" ; note "ctaatttcctgttcctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1282046 1282051 . - . misc_feature unknown_1034 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1282155 1282164 . - . misc_feature unknown_1035 ; colour "6" ; note "ctaattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1282212 1282217 . - . misc_feature unknown_1036 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1282363 1282392 . - . mRNA SPCC23B6.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC23B6.05c" ; systematic_id "SPCC23B6.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1283162 1286035 . + . mRNA SPCC1322.01 ; systematic_id "SPCC1322.01" ; colour "2" ; gene "SPCC23B6.06 ||| SPCC1322.01 ||| rpm1 ||| par1" ; Alias "rpm1" ; db_xref "SPD:47/47D03" ; synonym "SPCC23B6.06 ||| par1" ; GO "GO:0005759; mitochondrial matrix
GO:0003723; RNA binding
GO:0008859; exoribonuclease II activity
GO:0006401; RNA catabolic process
GO:0000965; mitochondrial RNA 3'-end processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR287C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, RNA Processosome Mitochondrial; cv=name_description; db_xref=PMID:18304578; date=20091002" ; primary_name "rpm1" ; product "3'-5' exonuclease for RNA 3' ss-tail" ;
chromosome3 GeneDB CDS 1283162 1286035 . + . mRNA SPCC1322.01 ; colour "2" ;
chromosome3 GeneDB misc_feature 1285074 1285176 . + . misc_feature unknown_1037 ; note "nominal overlap with cosmid SPCC1322 and cosmid SPCC23B6" ;
chromosome3 GeneDB CDS_parts 1286350 1287405 . + . mRNA SPCC1322.02 ; db_xref "SPD:16/16B09" ; systematic_id "SPCC1322.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1322.02" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1286350 1287405 . + . mRNA SPCC1322.02 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 1287406 1287451 . + . mRNA SPCC1322.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.02" ; systematic_id "SPCC1322.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1287891 1288136 . + . mRNA SPCC1322.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.03" ; systematic_id "SPCC1322.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1288137 1290725 . + . mRNA SPCC1322.03 ; db_xref "SPD:38/38E06" ; systematic_id "SPCC1322.03" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0022857; transmembrane transporter activity
GO:0006810; transport
GO:0055085; transmembrane transport" ; colour "7" ; gene "SPCC1322.03" ; product "TRP-like ion channel (predicted)" ;
chromosome3 GeneDB CDS 1288137 1290725 . + . mRNA SPCC1322.03 ; colour "7" ;
chromosome3 GeneDB misc_RNA 1291525 1291986 . + . misc_RNA SPNCRNA.122 ; db_xref "EMBL:AU011026" ; systematic_id "SPNCRNA.122" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU011026; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU011026; date=20050412" ; gene "SPNCRNA.122" ; product "non-coding RNA (predicted)" ;
chromosome3 GeneDB 5'-UTR 1292109 1292177 . + . mRNA SPCC1322.04 ; ID "SPCC1322.04" ; systematic_id "SPCC1322.04" ; note "mRNA from AU007747" ;
chromosome3 GeneDB CDS_parts 1292178 1293698 . + . mRNA SPCC1322.04 ; db_xref "SPD:24/24F10" ; systematic_id "SPCC1322.04" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL035W and YHL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0003983; UTP:glucose-1-phosphate uridylyltransferase activity
GO:0006011; UDP-glucose metabolism
GO:0005737; cytoplasm" ; gene "SPCC1322.04" ; product "UTP-glucose-1-phosphate uridylyltransferase (predicted)" ; EC_number "2.7.7.9" ;
chromosome3 GeneDB CDS 1292178 1293698 . + . mRNA SPCC1322.04 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1293699 1293774 . + . mRNA SPCC1322.04 ; ID "SPCC1322.04" ; db_xref "EMBL:D89160" ; systematic_id "SPCC1322.04" ;
chromosome3 GeneDB 3'-UTR 1293804 1294075 . - . mRNA SPCC1322.05c ; ID "SPCC1322.05c" ; systematic_id "SPCC1322.05c" ; note "mRNA from AU008495" ;
chromosome3 GeneDB CDS_parts 1294076 1295914 . - . mRNA SPCC1322.05c ; db_xref "SPD:36/36G11" ; systematic_id "SPCC1322.05c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL045W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004463; leukotriene-A4 hydrolase activity
GO:0006691; leukotriene metabolism
GO:0004177; aminopeptidase activity
GO:0006629; lipid metabolism
GO:0030163; protein catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004301; epoxide hydrolase activity" ; gene "SPCC1322.05c" ; product "leukotriene A-4 hydrolase (predicted)" ; EC_number "3.3.2.6 ||| 3.3.2.10" ;
chromosome3 GeneDB CDS 1294076 1295914 . - . mRNA SPCC1322.05c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1295913 1296086 . - . mRNA SPCC1322.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.05c" ; systematic_id "SPCC1322.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 1296337 1296666 . - . LTR unknown_1038 ; colour "4" ; note "putative degraded LTR" ;
chromosome3 GeneDB CDS_parts 1296958 1300186 . + . mRNA SPCC1322.06 ; systematic_id "SPCC1322.06" ; colour "2" ; gene "kap113 ||| SPCC1322.06" ; Alias "kap113" ; db_xref "SPD:48/48B01" ; GO "; nuclear pore
GO:0005634; nucleus
GO:0006406; mRNA export from nucleus
GO:0007094; mitotic spindle checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YPL125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "kap113" ; product "karyopherin Kap113" ;
chromosome3 GeneDB CDS 1296958 1297184 . + . mRNA SPCC1322.06 ; colour "2" ;
chromosome3 GeneDB CDS 1297262 1298294 . + . mRNA SPCC1322.06 ; colour "2" ;
chromosome3 GeneDB CDS 1298351 1299040 . + . mRNA SPCC1322.06 ; colour "2" ;
chromosome3 GeneDB CDS 1299091 1299930 . + . mRNA SPCC1322.06 ; colour "2" ;
chromosome3 GeneDB CDS 1300025 1300186 . + . mRNA SPCC1322.06 ; colour "2" ;
chromosome3 GeneDB misc_feature 1297185 1297190 . + . misc_feature unknown_1039 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1297240 1297261 . + . misc_feature unknown_1040 ; colour "6" ; note "ctaatgtatgattgtttggcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1298295 1298300 . + . misc_feature unknown_1041 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1298336 1298350 . + . misc_feature unknown_1042 ; colour "6" ; note "ttaacgataatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1299041 1299046 . + . misc_feature unknown_1043 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1299080 1299090 . + . misc_feature unknown_1044 ; colour "6" ; note "ctaatttctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1299931 1299936 . + . misc_feature unknown_1045 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1300009 1300024 . + . misc_feature unknown_1046 ; colour "6" ; note "ctaacttttattttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1300187 1300540 . + . mRNA SPCC1322.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.06" ; systematic_id "SPCC1322.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1300640 1300954 . - . mRNA SPCC1322.07c ; systematic_id "SPCC1322.07c" ; colour "8" ; gene "SPCC1322.07c ||| mug150" ; db_xref "SPD:01/01F07" ; Alias "mug150" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=gene expression, expressed during meiosis; db_xref=PMID:16303567; date=20100607" ; primary_name "mug150" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1300640 1300954 . - . mRNA SPCC1322.07c ; colour "8" ;
chromosome3 GeneDB 5'-UTR 1301970 1302899 . + . mRNA SPCC1322.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.08" ; systematic_id "SPCC1322.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1302900 1304865 . + . mRNA SPCC1322.08 ; systematic_id "SPCC1322.08" ; colour "2" ; db_xref "SPD:27/27B03" ; Alias "srk1" ; synonym "mkp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12080074; date=19700101 ||| term=orthologous to S. cerevisiae YGL158W and YLR248W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=name description, Sty1 Regulated Kinase; db_xref=PMID:12080074; date=20100122 ||| term=target is Cdc25; qualifier=phosphorylates; db_xref=PMID:156629716; date=20100224 ||| term=target of Sty1; qualifier=phosphorylated_by|during_anaphase; db_xref=PMID:12589433; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:15629716; date=20101215 ||| term=phenotype, cell morphology, small cells; db_xref=PMID:15629716; qualifier=deletion|at_high_temperature; date=20101215" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004683; calcium- and calmodulin-dependent protein kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0040020; regulation of meiosis
GO:0007088; regulation of mitosis
GO:0033554; cellular response to stress
GO:0031098; stress-activated protein kinase signaling pathway
GO:0010972; negative regulation of G2/M transition" ; primary_name "srk1" ; product "MAPK-activated protein kinase Srk1" ;
chromosome3 GeneDB CDS 1302900 1302911 . + . mRNA SPCC1322.08 ; colour "2" ;
chromosome3 GeneDB CDS 1303135 1304865 . + . mRNA SPCC1322.08 ; colour "2" ;
chromosome3 GeneDB misc_feature 1302912 1302917 . + . misc_feature unknown_1047 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1303117 1303134 . + . misc_feature unknown_1048 ; colour "6" ; note "ctaatttaatttatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1304866 1305436 . + . mRNA SPCC1322.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.08" ; systematic_id "SPCC1322.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1306150 1306193 . + . mRNA SPCC1322.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.09" ; systematic_id "SPCC1322.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1306194 1307773 . + . mRNA SPCC1322.09 ; db_xref "SPD:25/25D10" ; systematic_id "SPCC1322.09" ; colour "10" ; GO "GO:0005794; Golgi apparatus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL123C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1322.09" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 1306194 1306737 . + . mRNA SPCC1322.09 ; colour "10" ;
chromosome3 GeneDB CDS 1306796 1306974 . + . mRNA SPCC1322.09 ; colour "10" ;
chromosome3 GeneDB CDS 1307129 1307773 . + . mRNA SPCC1322.09 ; colour "10" ;
chromosome3 GeneDB misc_feature 1306738 1306743 . + . misc_feature unknown_1049 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1306778 1306795 . + . misc_feature unknown_1050 ; colour "6" ; note "ctaacaaatgtcttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1306975 1306980 . + . misc_feature unknown_1051 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1307114 1307128 . + . misc_feature unknown_1052 ; colour "6" ; note "ctgacatgttaccag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1307774 1307802 . + . mRNA SPCC1322.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.09" ; systematic_id "SPCC1322.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1309616 1309779 . + . mRNA SPCC1322.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.10" ; systematic_id "SPCC1322.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1309780 1310568 . + . mRNA SPCC1322.10 ; systematic_id "SPCC1322.10" ; colour "10" ; gene "SPCC1322.10" ; db_xref "SPD:09/09H11" ; synonym "pwp1" ; GO "GO:0009986; cell surface
GO:0009277; fungal-type cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa ncu05667.1; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=name description, Pombe Wall Protein; db_xref=PMID:17230583; date=20090615 ||| term=modification, GPI attachment site; cv=pt_mod; evidence=IDA; db_xref=PMID:17230583; date=20100104" ; product "cell wall protein Pwp1" ;
chromosome3 GeneDB CDS 1309780 1310568 . + . mRNA SPCC1322.10 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 1310569 1310947 . + . mRNA SPCC1322.10 ; ID "SPCC1322.10" ; systematic_id "SPCC1322.10" ; note "mRNA from spc04594" ;
chromosome3 GeneDB CDS_parts 1311652 1312336 . + . mRNA SPCC1322.11 ; systematic_id "SPCC1322.11" ; colour "2" ; gene "rpl2302 ||| rpl23-2 ||| SPCC1322.11" ; Alias "rpl2302" ; db_xref "SPD:41/41E03" ; synonym "rpl23-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL087C and YER117W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl2302" ; product "60S ribosomal protein L23" ;
chromosome3 GeneDB CDS 1311652 1311823 . + . mRNA SPCC1322.11 ; colour "2" ;
chromosome3 GeneDB CDS 1312089 1312336 . + . mRNA SPCC1322.11 ; colour "2" ;
chromosome3 GeneDB misc_feature 1311824 1311829 . + . misc_feature unknown_1053 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 1311824 1312088 . + . intron SPCC1322.11 ; systematic_id "SPCC1322.11" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1312071 1312088 . + . misc_feature unknown_1054 ; colour "6" ; note "ctaacgaaatttttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1312337 1312367 . + . mRNA SPCC1322.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.11" ; systematic_id "SPCC1322.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1312798 1315932 . - . mRNA SPCC1322.12c ; systematic_id "SPCC1322.12c" ; colour "2" ; gene "bub1 ||| SPCC1322.12c" ; Alias "bub1" ; db_xref "SPD:30/30A12" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0005634; nucleus
GO:0005515; protein binding
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0051754; meiotic sister chromatid cohesion, centromeric
GO:0007094; mitotic spindle checkpoint
GO:0034613; cellular protein localization
GO:0034501; protein localization to kinetochore
GO:0034613; cellular protein localization
GO:0072371; histone kinase (H2A-S121 specific) activity
GO:0072370; histone H2A-121 phosphorylation
GO:0034501; protein localization to kinetochore
GO:0051455; attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11331883; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=orthologous to S. cerevisiae YGR188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Hta1; qualifier=phosphorylates; db_xref=PMID:19965387; date=20101116 ||| term=target is Hta2; qualifier=phosphorylates; db_xref=PMID:19965387; date=20101116 ||| term=human BUB1 and BUB1B ortholog; date=20101116" ; primary_name "bub1" ; product "serine/threonine protein kinase Bub1" ;
chromosome3 GeneDB CDS 1312798 1315932 . - . mRNA SPCC1322.12c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1315931 1315996 . - . mRNA SPCC1322.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.12c" ; systematic_id "SPCC1322.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1316327 1316336 . + . mRNA SPCC1322.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.13" ; systematic_id "SPCC1322.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1316337 1317995 . + . mRNA SPCC1322.13 ; systematic_id "SPCC1322.13" ; colour "2" ; gene "ade6 ||| min1 ||| SPCC1322.13" ; Alias "ade6" ; db_xref "SPD:34/34G10" ; synonym "min1" ; GO "GO:0004638; phosphoribosylaminoimidazole carboxylase activity
GO:0006144; purine base metabolism
GO:0005737; cytoplasm
GO:0006189; 'de novo' IMP biosynthesis" ; controlled_curation "term=orthologous to S. cerevisiae YOR128C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ade6" ; product "phosphoribosylaminoimidazole carboxylase Ade6" ; EC_number "4.1.1.21" ;
chromosome3 GeneDB CDS 1316337 1317995 . + . mRNA SPCC1322.13 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1318375 1318424 . - . mRNA SPCC1322.14c ; ID "SPCC1322.14c" ; systematic_id "SPCC1322.14c" ; note "mRNA from SPD159" ;
chromosome3 GeneDB CDS_parts 1318425 1320590 . - . mRNA SPCC1322.14c ; systematic_id "SPCC1322.14c" ; colour "7" ; gene "vtc4 ||| SPCC1322.14c" ; Alias "vtc4" ; db_xref "SPD:37/37G05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL012C; date=19700101 ||| term=SPX domain protein; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000329; vacuolar membrane
GO:0007034; vacuolar transport
GO:0042144; vacuole fusion, non-autophagic" ; primary_name "vtc4" ; product "vacuolar transporter chaperone (VTC) complex subunit (predicted)" ; reserved_name "vtc4" ;
chromosome3 GeneDB CDS 1318425 1320590 . - . mRNA SPCC1322.14c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1320589 1321002 . - . mRNA SPCC1322.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.14c" ; systematic_id "SPCC1322.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1321392 1321586 . + . mRNA SPCC1322.15 ; ID "SPCC1322.15" ; systematic_id "SPCC1322.15" ; note "mRNA from AU014244" ;
chromosome3 GeneDB CDS_parts 1321587 1321922 . + . mRNA SPCC1322.15 ; systematic_id "SPCC1322.15" ; colour "2" ; gene "rpl3402 ||| rpl34-2 ||| rpl34 ||| SPCC1322.15" ; Alias "rpl3402" ; db_xref "SPD:01/01H10" ; synonym "rpl34 ||| rpl34-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER056C-A and YIL052C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl3402" ; product "60S ribosomal protein L34" ;
chromosome3 GeneDB CDS 1321587 1321922 . + . mRNA SPCC1322.15 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1321923 1322155 . + . mRNA SPCC1322.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1322.15" ; systematic_id "SPCC1322.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1323844 1325022 . + . mRNA SPCC1322.16 ; systematic_id "SPCC1322.16" ; colour "7" ; gene "SPCC1322.16 ||| phb2" ; note "may use Met at upstream MNRQ" ; Alias "phb2" ; db_xref "SPD:43/43H06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR231C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006457; protein folding" ; primary_name "phb2" ; product "prohibitin Phb2 (predicted)" ;
chromosome3 GeneDB CDS 1323844 1324147 . + . mRNA SPCC1322.16 ; colour "7" ;
chromosome3 GeneDB CDS 1324355 1324621 . + . mRNA SPCC1322.16 ; colour "7" ;
chromosome3 GeneDB CDS 1324678 1324746 . + . mRNA SPCC1322.16 ; colour "7" ;
chromosome3 GeneDB CDS 1324796 1325022 . + . mRNA SPCC1322.16 ; colour "7" ;
chromosome3 GeneDB misc_feature 1324148 1324153 . + . misc_feature unknown_1055 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB intron 1324148 1324354 . + . intron SPCC1322.16 ; systematic_id "SPCC1322.16" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1324337 1324354 . + . misc_feature unknown_1056 ; colour "6" ; note "ttaaccatttttctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1324622 1324627 . + . misc_feature unknown_1057 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB intron 1324622 1324677 . + . intron SPCC1322.16 ; systematic_id "SPCC1322.16" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1324661 1324677 . + . misc_feature unknown_1058 ; colour "6" ; note "ctaactgcatccaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1324747 1324752 . + . misc_feature unknown_1059 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB intron 1324747 1324795 . + . intron SPCC1322.16 ; systematic_id "SPCC1322.16" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1324778 1324795 . + . misc_feature unknown_1060 ; colour "6" ; note "ttaacaataattttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1325023 1325076 . + . mRNA SPCC1322.16 ; ID "SPCC1322.16" ; systematic_id "SPCC1322.16" ; note "mRNA from AU013705" ;
chromosome3 GeneDB 3'-UTR 1325125 1325196 . - . mRNA SPCC132.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC132.01c" ; systematic_id "SPCC132.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1325197 1328307 . - . mRNA SPCC132.01c ; systematic_id "SPCC132.01c" ; colour "10" ; gene "SPCC1322.17c ||| SPCC132.01c" ; Alias "SPCC1322.17c" ; db_xref "SPD:47/47H01" ; synonym "SPCC1322.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SDCCAG1 ortholog; date=20100728" ; primary_name "SPCC1322.17c" ; product "DUF814 family protein" ;
chromosome3 GeneDB CDS 1325197 1328130 . - . mRNA SPCC132.01c ; colour "10" ;
chromosome3 GeneDB CDS 1328176 1328307 . - . mRNA SPCC132.01c ; colour "10" ;
chromosome3 GeneDB misc_feature 1326615 1327143 . + . misc_feature unknown_1061 ; note "nominal overlap with cosmid SPCC132 and cosmid SPCC1322" ;
chromosome3 GeneDB misc_feature 1328131 1328144 . - . misc_feature unknown_1062 ; colour "6" ; note "ctaacccgttaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1328170 1328175 . - . misc_feature unknown_1063 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1328306 1328370 . - . mRNA SPCC132.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC132.01c" ; systematic_id "SPCC132.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1328975 1329097 . + . mRNA SPCC132.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC132.02" ; systematic_id "SPCC132.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1329098 1330220 . + . mRNA SPCC132.02 ; systematic_id "SPCC132.02" ; colour "2" ; gene "hst2 ||| SPCC132.02" ; Alias "hst2" ; db_xref "SPD:43/43H01" ; GO "GO:0005721; centromeric heterochromatin
GO:0016585; chromatin remodeling complex
GO:0005737; cytoplasm
GO:0031934; mating-type region heterochromatin
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0033553; rDNA heterochromatin
GO:0031933; telomeric heterochromatin
GO:0017136; NAD-dependent histone deacetylase activity
GO:0016566; specific transcriptional repressor activity
GO:0003714; transcription corepressor activity
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0016575; histone deacetylation
GO:0060303; regulation of nucleosome density" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL015C; date=19700101 ||| term=gene expression, transcriptionally regulates genes involved in transport; qualifier=represses; cv=gene_ex; db_xref=PMID:17446861; date=20080721 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "hst2" ; product "Sir2 family histone deacetylase Hst2" ;
chromosome3 GeneDB CDS 1329098 1329176 . + . mRNA SPCC132.02 ; colour "2" ;
chromosome3 GeneDB CDS 1329234 1329610 . + . mRNA SPCC132.02 ; colour "2" ;
chromosome3 GeneDB CDS 1329678 1330220 . + . mRNA SPCC132.02 ; colour "2" ;
chromosome3 GeneDB misc_feature 1329177 1329182 . + . misc_feature unknown_1064 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1329210 1329233 . + . misc_feature unknown_1065 ; colour "6" ; note "ctaatgcgattttatcgaaaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1329611 1329616 . + . misc_feature unknown_1066 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1329662 1329677 . + . misc_feature unknown_1067 ; colour "6" ; note "ctgacggaaaacaaag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1330221 1330626 . + . mRNA SPCC132.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC132.02" ; systematic_id "SPCC132.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1331231 1331554 . + . mRNA SPCC132.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC132.03" ; systematic_id "SPCC132.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1331555 1332345 . + . mRNA SPCC132.03 ; db_xref "SPD:43/43C05" ; systematic_id "SPCC132.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC132.03" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1331555 1331791 . + . mRNA SPCC132.03 ; colour "8" ;
chromosome3 GeneDB CDS 1331986 1332209 . + . mRNA SPCC132.03 ; colour "8" ;
chromosome3 GeneDB CDS 1332276 1332345 . + . mRNA SPCC132.03 ; colour "8" ;
chromosome3 GeneDB misc_feature 1331792 1331797 . + . misc_feature unknown_1068 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1331965 1331985 . + . misc_feature unknown_1069 ; colour "6" ; note "ctaatcaactatttctgttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1332210 1332215 . + . misc_feature unknown_1070 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1332264 1332275 . + . misc_feature unknown_1071 ; colour "6" ; note "ttaacattttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1332346 1332550 . + . mRNA SPCC132.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC132.03" ; systematic_id "SPCC132.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1332716 1332763 . - . mRNA SPCC132.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC132.04c" ; systematic_id "SPCC132.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1332764 1336084 . - . mRNA SPCC132.04c ; systematic_id "SPCC132.04c" ; colour "7" ; gene "SPCC132.04c" ; note "S. cerevisiae ortholog YDL215C is not normally involved in glutamate biosynthesis (PMID:1975578) i.e reaction direction is toward 2-oxoglutarate in vitro" ; Alias "gdh2" ; db_xref "KEGG:MAP00251; ||| KEGG:MAP00910; ||| SPD:30/30D03" ; GO "GO:0006536; glutamate metabolism
GO:0004352; glutamate dehydrogenase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL215C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gdh2" ; product "NAD-dependent glutamate dehydrogenase Gdh2 (predicted)" ; EC_number "1.4.1.2" ;
chromosome3 GeneDB CDS 1332764 1336084 . - . mRNA SPCC132.04c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1336083 1336125 . - . mRNA SPCC132.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC132.04c" ; systematic_id "SPCC132.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 1337438 1337811 . + . misc_RNA SPNCRNA.488 ; db_xref "PMID:18488015" ; synonym "SPNG2399" ; systematic_id "SPNCRNA.488" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 3'-UTR 1338711 1338730 . - . mRNA SPCC132.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC132.05c" ; systematic_id "SPCC132.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1338731 1340098 . - . mRNA SPCC132.05c ; systematic_id "SPCC132.05c" ; synonym "SPCC338.19" ; pseudo "_no_value" ; colour "13" ; gene "SPCC132.05c ||| SPCC338.19" ; product "trichothecene 3-O-acetyltransferase pseudogene" ;
chromosome3 GeneDB CDS 1338731 1340098 . - . mRNA SPCC132.05c ; colour "13" ;
chromosome3 GeneDB misc_feature 1339069 1339617 . - . misc_feature unknown_1072 ; note "nominal overlap with cosmid SPCC338, EM:AL023781 S.pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 1339069 1339617 . + . misc_feature unknown_1073 ; note "nominal overlap with cosmid SPCC132, EM:AL121807 S. pombe chromosome 3" ;
chromosome3 GeneDB CDS_parts 1341269 1341622 . - . mRNA SPCC338.18 ; db_xref "SPD:02/02D02" ; systematic_id "SPCC338.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC338.18" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1341269 1341622 . - . mRNA SPCC338.18 ; colour "8" ;
chromosome3 GeneDB misc_RNA 1342276 1342801 . + . misc_RNA SPNCRNA.489 ; db_xref "PMID:18488015" ; synonym "SPNG2402" ; systematic_id "SPNCRNA.489" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 1342946 1343091 . + . mRNA SPCC338.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.17c" ; systematic_id "SPCC338.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1343092 1345058 . + . mRNA SPCC338.17c ; systematic_id "SPCC338.17c" ; colour "2" ; gene "rad21 ||| SPCC338.17c" ; Alias "rad21" ; db_xref "SPD:27/27B06" ; GO "GO:0000794; condensed nuclear chromosome
GO:0030892; mitotic cohesin complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0000724; double-strand break repair via homologous recombination
GO:0006302; double-strand break repair
GO:0007064; mitotic sister chromatid cohesion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, proteolytic cleavage; residue=179|231; db_xref=PMID:15329725; cv=pt_mod; date=20100125 ||| term=target of Cut1; date=20100128" ; primary_name "rad21" ; product "mitotic cohesin complex, non-SMC subunit Rad21 (kleisin)" ;
chromosome3 GeneDB CDS 1343092 1343124 . + . mRNA SPCC338.17c ; colour "2" ;
chromosome3 GeneDB CDS 1343205 1345058 . + . mRNA SPCC338.17c ; colour "2" ;
chromosome3 GeneDB misc_feature 1343125 1343130 . + . misc_feature unknown_1074 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1343188 1343204 . + . misc_feature unknown_1075 ; colour "6" ; note "ctaactgttcgcgttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1345059 1345475 . + . mRNA SPCC338.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.17c" ; systematic_id "SPCC338.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1345394 1347127 . - . mRNA SPCC338.16 ; systematic_id "SPCC338.16" ; colour "2" ; gene "pof3 ||| SPCC338.16" ; Alias "pof3" ; db_xref "SPD:35/35G10" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0000723; telomere maintenance
GO:0006511; ubiquitin-dependent protein catabolic process
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR080W; date=19700101 ||| term=human STIP1 ortholog; date=20080402 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11809834; date=20100708 ||| term=phenotype, sensitive to UV; qualifier=deletion; db_xref=PMID:11809834; date=20100708 ||| term=phenotype, chromosome segregation defects, lagging chromosomes; qualifier=deletion; db_xref=PMID:11809834; date=20100708 ||| term=phenotype, chromosome segregation defects, chromosome loss; qualifier=deletion; db_xref=PMID:11809834; date=20100708" ; primary_name "pof3" ; product "F-box protein Pof3" ;
chromosome3 GeneDB CDS 1345394 1347127 . - . mRNA SPCC338.16 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1347730 1347821 . - . mRNA SPCC338.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.15" ; systematic_id "SPCC338.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1347822 1349398 . - . mRNA SPCC338.15 ; systematic_id "SPCC338.15" ; colour "7" ; gene "SPCC338.15" ; Alias "wbp1" ; db_xref "SPD:25/25D06" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "wbp1" ; product "dolichyl-di-phosphooligosaccharide-protein glycotransferase subunit Wbp1 (predicted)" ;
chromosome3 GeneDB CDS 1347822 1348238 . - . mRNA SPCC338.15 ; colour "7" ;
chromosome3 GeneDB CDS 1348369 1349024 . - . mRNA SPCC338.15 ; colour "7" ;
chromosome3 GeneDB CDS 1349112 1349222 . - . mRNA SPCC338.15 ; colour "7" ;
chromosome3 GeneDB CDS 1349269 1349398 . - . mRNA SPCC338.15 ; colour "7" ;
chromosome3 GeneDB misc_feature 1348239 1348249 . - . misc_feature unknown_1076 ; colour "6" ; note "ctaacgtttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1348239 1348368 . - . intron SPCC338.15 ; systematic_id "SPCC338.15" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1348363 1348368 . - . misc_feature unknown_1077 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1349025 1349044 . - . misc_feature unknown_1078 ; colour "6" ; note "ctaacgcactttatgaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1349106 1349111 . - . misc_feature unknown_1079 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1349223 1349240 . - . misc_feature unknown_1080 ; colour "6" ; note "ctaactgttactatgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1349263 1349268 . - . misc_feature unknown_1081 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1349397 1349436 . - . mRNA SPCC338.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.15" ; systematic_id "SPCC338.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1349656 1350061 . - . mRNA SPCC338.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.14" ; systematic_id "SPCC338.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1350062 1351084 . - . mRNA SPCC338.14 ; db_xref "SPD:15/15D03" ; systematic_id "SPCC338.14" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR105W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004001; adenosine kinase activity
GO:0006144; purine base metabolism
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006169; adenosine salvage" ; gene "SPCC338.14" ; product "adenosine kinase (predicted)" ; EC_number "2.7.1.20" ;
chromosome3 GeneDB CDS 1350062 1351084 . - . mRNA SPCC338.14 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1351692 1351992 . - . mRNA SPCC338.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.13" ; systematic_id "SPCC338.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1351993 1354209 . - . mRNA SPCC338.13 ; systematic_id "SPCC338.13" ; colour "7" ; gene "SPCC338.13 ||| cog4" ; Alias "cog4" ; db_xref "SPD:38/38A07" ; GO "GO:0006886; intracellular protein transport
GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0000301; retrograde transport, vesicle recycling within Golgi" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cog4" ; product "Golgi transport complex subunit Cog4 (predicted)" ;
chromosome3 GeneDB CDS 1351993 1354209 . - . mRNA SPCC338.13 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1354208 1354440 . - . mRNA SPCC338.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.13" ; systematic_id "SPCC338.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 1354634 1354743 . + . misc_RNA SPNCRNA.490 ; db_xref "PMID:18488015" ; synonym "SPNG2404" ; systematic_id "SPNCRNA.490" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 3'-UTR 1355155 1355275 . - . mRNA SPCC338.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.12" ; systematic_id "SPCC338.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1355276 1355509 . - . mRNA SPCC338.12 ; systematic_id "SPCC338.12" ; colour "7" ; gene "SPCC338.12 ||| pbi2" ; Alias "pbi2" ; db_xref "SPD:01/01B03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL015W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0042144; vacuole fusion, non-autophagic
GO:0030162; regulation of proteolysis
GO:0004866; endopeptidase inhibitor activity
GO:0000324; fungal-type vacuole" ; primary_name "pbi2" ; product "proteinase B inhibitor Pbi2 (predicted)" ;
chromosome3 GeneDB CDS 1355276 1355509 . - . mRNA SPCC338.12 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1355508 1355596 . - . mRNA SPCC338.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.12" ; systematic_id "SPCC338.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1356162 1356325 . + . mRNA SPCC338.11c ; ID "SPCC338.11c" ; systematic_id "SPCC338.11c" ; note "mRNA from SPIUVI22R" ;
chromosome3 GeneDB CDS_parts 1356326 1357237 . + . mRNA SPCC338.11c ; systematic_id "SPCC338.11c" ; colour "2" ; gene "rrg1 ||| uvi22 ||| SPCC338.11c" ; Alias "rrg1" ; db_xref "SPD:12/12F06" ; synonym "uvi22" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12442907; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:12442907; date=20100712 ||| term=gene expression, expression induced by glucose; db_xref=PMID:11861905; date=19700101 ||| term=gene expression, regulated by mRNA stability; db_xref=PMID:11861905; cv=gene_ex; date=19700101 ||| term=target of SAPK pathway; db_xref=PMID:12521309; date=19700101 ||| term=orthologous to S. cerevisiae YBR271W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081124" ; primary_name "rrg1" ; product "methyltransferase Rrg1 (predicted)" ;
chromosome3 GeneDB CDS 1356326 1357237 . + . mRNA SPCC338.11c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1357238 1357371 . + . mRNA SPCC338.11c ; ID "SPCC338.11c" ; systematic_id "SPCC338.11c" ; note "mRNA from SPIUVI22R" ;
chromosome3 GeneDB 5'-UTR 1357796 1357901 . + . mRNA SPCC338.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.10c" ; systematic_id "SPCC338.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1357902 1358426 . + . mRNA SPCC338.10c ; systematic_id "SPCC338.10c" ; colour "7" ; gene "cox5 ||| SPCC338.10c" ; Alias "cox5" ; db_xref "SPD:05/05C06" ; GO "GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0004129; cytochrome-c oxidase activity
GO:0006123; mitochondrial electron transport, cytochrome c to oxygen" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL111W and YNL052W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cox5" ; product "cytochrome c oxidase subunit V (predicted)" ;
chromosome3 GeneDB CDS 1357902 1358426 . + . mRNA SPCC338.10c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1358427 1358622 . + . mRNA SPCC338.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.10c" ; systematic_id "SPCC338.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1358737 1358890 . - . mRNA SPCC338.08 ; ID "SPCC338.08" ; systematic_id "SPCC338.08" ; note "mRNA from spc01163" ;
chromosome3 GeneDB CDS_parts 1358891 1359819 . - . mRNA SPCC338.08 ; systematic_id "SPCC338.08" ; colour "2" ; gene "SPCC338.08 ||| ctp1 ||| mug38" ; Alias "ctp1" ; db_xref "SPD:11/11D10" ; synonym "nip1 ||| slr9 ||| mug38" ; GO "GO:0000228; chromosome
GO:0004519; endonuclease activity
GO:0042803; protein homodimerization activity
GO:0000729; DNA double-strand break processing
GO:0000729; DNA double-strand break processing
; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000706; meiotic DNA double-strand break processing
GO:0010212; response to ionizing radiation
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17936710; date=20071109 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to IR; db_xref=PMID:17936710; cv=phenotype; date=20100723 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:17936710; cv=phenotype; date=20100723 ||| term=phenotype, growth defect, slow growth; db_xref=PMID:17936710; cv=phenotype; date=20100723 ||| term=orthologous to S. cerevisiae YGL175C; date=20071109 ||| term=human CtIP homolog; db_xref=PMID:17936710; date=20071109 ||| term=localization, double-strand breaks; db_xref=PMID:17936710; date=20071109 ||| term=localization requires Mre11; db_xref=PMID:17936710; date=20071109 ||| term=gene expression, transcriptionally regulated by MBF complex; db_xref=PMID:17936710; cv=gene_ex; date=20071109 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=during_DNA_damage; db_xref=PMID:18378696; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:18378696; date=20090723 ||| term=name description, Synthetic Lethal with Rad2 mutant; cv=name_description; db_xref=PMID:18378696; date=20090723 ||| term=name description, Nbs1- Interacting Protein 1; cv=name_description; db_xref=PMID:18378696; date=20090723 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=target of Tel1; qualifier=phosphorylated_by; db_xref=PMID:18378696; date=20090903" ; primary_name "ctp1" ; product "CtIP-related endonuclease" ;
chromosome3 GeneDB CDS 1358891 1359082 . - . mRNA SPCC338.08 ; colour "2" ;
chromosome3 GeneDB CDS 1359127 1359819 . - . mRNA SPCC338.08 ; colour "2" ;
chromosome3 GeneDB misc_RNA 1360323 1360746 . + . misc_RNA SPNCRNA.491 ; db_xref "PMID:18488015" ; synonym "SPNG2405" ; systematic_id "SPNCRNA.491" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome3 GeneDB tRNA 1361090 1361161 . - . tRNA SPCTRNATHR.10 ; systematic_id "SPCTRNATHR.10" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033413; TGT codon-amino acid adaptor activity" ; gene "SPCTRNATHR.10" ; product "tRNA Threonine" ; note "tRNA Thr anticodon TGT, Cove score 68.01" ;
chromosome3 GeneDB CDS_parts 1362628 1364868 . + . mRNA SPCC338.07c ; systematic_id "SPCC338.07c" ; colour "7" ; gene "SPCC338.07c" ; Alias "naa15" ; db_xref "SPD:28/28A07" ; GO "GO:0031415; NatA complex
GO:0017196; N-terminal peptidyl-methionine acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; primary_name "naa15" ; product "NatA N-acetyltransferase complex regulatory subunit Naa15 (predicted)" ;
chromosome3 GeneDB CDS 1362628 1362681 . + . mRNA SPCC338.07c ; colour "7" ;
chromosome3 GeneDB CDS 1362733 1364868 . + . mRNA SPCC338.07c ; colour "7" ;
chromosome3 GeneDB misc_feature 1362682 1362687 . + . misc_feature unknown_1082 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1362721 1362732 . + . misc_feature unknown_1083 ; colour "6" ; note "ctaaccctgtag, splice branch and acceptor" ;
chromosome3 GeneDB 5'-UTR 1365112 1365221 . + . mRNA SPCC338.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.06c" ; systematic_id "SPCC338.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1365222 1365641 . + . mRNA SPCC338.06c ; db_xref "SPD:03/03D05" ; systematic_id "SPCC338.06c" ; colour "7" ; GO "GO:0034605; cellular response to heat
GO:0061077; chaperone-mediated protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, chaperone; qualifier=predicted; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YBR072W and YDR171W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC338.06c" ; product "heat shock protein Hsp20 family (predicted)" ;
chromosome3 GeneDB CDS 1365222 1365641 . + . mRNA SPCC338.06c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1366181 1366620 . + . mRNA SPCC338.05c ; ID "SPCC338.05c" ; systematic_id "SPCC338.05c" ; note "mRNA from spc06098" ;
chromosome3 GeneDB CDS_parts 1366621 1367477 . + . mRNA SPCC338.05c ; systematic_id "SPCC338.05c" ; colour "2" ; gene "mms2 ||| spm2 ||| SPCC338.05c" ; Alias "mms2" ; db_xref "SPD:11/11D03" ; synonym "spm2" ; GO "GO:0005515; protein binding
GO:0006301; postreplication repair
GO:0004842; ubiquitin conjugating enzyme activity
GO:0016567; protein ubiquitination
GO:0042803; protein homodimerization activity
GO:0006301; postreplication repair
GO:0006301; postreplication repair
GO:0006301; postreplication repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL087C; date=19700101 ||| term=complementation, functionally complements S. cerevisiae MMS2; db_xref=PMID:12531016; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mms2" ; product "ubiquitin conjugating enzyme Mms2" ;
chromosome3 GeneDB CDS 1366621 1366631 . + . mRNA SPCC338.05c ; colour "2" ;
chromosome3 GeneDB CDS 1366679 1366817 . + . mRNA SPCC338.05c ; colour "2" ;
chromosome3 GeneDB CDS 1366981 1367106 . + . mRNA SPCC338.05c ; colour "2" ;
chromosome3 GeneDB CDS 1367285 1367364 . + . mRNA SPCC338.05c ; colour "2" ;
chromosome3 GeneDB CDS 1367414 1367477 . + . mRNA SPCC338.05c ; colour "2" ;
chromosome3 GeneDB misc_feature 1366632 1366637 . + . misc_feature unknown_1084 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB intron 1366632 1366678 . + . intron SPCC338.05c ; systematic_id "SPCC338.05c" ; note "confirmed by mRNA AF470233" ;
chromosome3 GeneDB misc_feature 1366666 1366678 . + . misc_feature unknown_1085 ; colour "6" ; note "ctaattttgatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1366818 1366823 . + . misc_feature unknown_1086 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 1366818 1366980 . + . intron SPCC338.05c ; systematic_id "SPCC338.05c" ; note "confirmed by mRNA AF470233" ;
chromosome3 GeneDB misc_feature 1366961 1366980 . + . misc_feature unknown_1087 ; colour "6" ; note "ctaatttgttattaatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1367107 1367112 . + . misc_feature unknown_1088 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 1367107 1367284 . + . intron SPCC338.05c ; systematic_id "SPCC338.05c" ; note "confirmed by mRNA AF470233" ;
chromosome3 GeneDB misc_feature 1367271 1367284 . + . misc_feature unknown_1089 ; colour "6" ; note "ctaacgttaattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1367365 1367370 . + . misc_feature unknown_1090 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 1367365 1367413 . + . intron SPCC338.05c ; systematic_id "SPCC338.05c" ; note "confirmed by mRNA AF470233" ;
chromosome3 GeneDB misc_feature 1367398 1367413 . + . misc_feature unknown_1091 ; colour "6" ; note "ctaacttatgttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1367478 1367640 . + . mRNA SPCC338.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC338.05c" ; systematic_id "SPCC338.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1367724 1367792 . - . mRNA SPCC338.04 ; ID "SPCC338.04" ; systematic_id "SPCC338.04" ; note "mRNA from AF105077" ;
chromosome3 GeneDB CDS_parts 1367793 1368355 . - . mRNA SPCC338.04 ; systematic_id "SPCC338.04" ; colour "2" ; gene "cid2 ||| SPCC338.04" ; db_xref "SPD:05/05H07" ; Alias "cid2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cid2" ; product "caffeine induced death protein Cid2" ;
chromosome3 GeneDB CDS 1367793 1368247 . - . mRNA SPCC338.04 ; colour "2" ;
chromosome3 GeneDB CDS 1368307 1368355 . - . mRNA SPCC338.04 ; colour "2" ;
chromosome3 GeneDB misc_feature 1368248 1368263 . - . misc_feature unknown_1092 ; colour "6" ; note "ctaatcatacttttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1368248 1368306 . - . intron SPCC338.04 ; systematic_id "SPCC338.04" ; note "intron confirmed by EST" ;
chromosome3 GeneDB misc_feature 1368301 1368306 . - . misc_feature unknown_1093 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1368356 1368405 . - . mRNA SPCC338.04 ; ID "SPCC338.04" ; systematic_id "SPCC338.04" ; note "mRNA from AF105077" ;
chromosome3 GeneDB CDS_parts 1368882 1369259 . - . mRNA SPCC338.02 ; systematic_id "SPCC338.02" ; colour "6" ; gene "SPCC338.02 ||| mug112" ; db_xref "SPD:42/42A10" ; Alias "mug112" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=warning, localization could be overexpression artifact; cv=warning; date=20100127 ||| term=warning, appears to be part of transcript of adjacent gene; cv=warning; date=20100127" ; primary_name "mug112" ; product "dubious" ;
chromosome3 GeneDB CDS 1368882 1369259 . - . mRNA SPCC338.02 ; colour "6" ;
chromosome3 GeneDB CDS_parts 1368919 1369344 . + . mRNA SPCC338.03c ; systematic_id "SPCC338.03c" ; colour "6" ; gene "SPCC338.03c" ; product "dubious" ;
chromosome3 GeneDB CDS 1368919 1369344 . + . mRNA SPCC338.03c ; colour "6" ;
chromosome3 GeneDB rRNA 1369974 1370202 . - . rRNA SPRRNA.03 ; systematic_id "SPRRNA.03" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "5S rRNA" ;
chromosome3 GeneDB misc_feature 1370202 1374171 . + . misc_feature unknown_1094 ; note "low complexity gene-free region" ;
chromosome3 GeneDB misc_feature 1370780 1372721 . + . misc_feature unknown_1095 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG2407" ;
chromosome3 GeneDB 5'-UTR 1373086 1374171 . + . mRNA SPCC1281.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1281.01" ; systematic_id "SPCC1281.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1374172 1381404 . + . mRNA SPCC1281.01 ; systematic_id "SPCC1281.01" ; colour "2" ; gene "ags1 ||| mok1 ||| SPCC338.01c ||| SPCC17A7.01 ||| SPCC1281.01" ; Alias "ags1" ; db_xref "SPD:48/48H12" ; synonym "mok1 ||| SPCC338.01c ||| SPCC17A7.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20070309 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9689051; date=20070309 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0009897; external side of plasma membrane
GO:0005887; integral to plasma membrane
GO:0009898; internal side of plasma membrane
GO:0033201; alpha-1,4-glucan synthase activity
GO:0004556; alpha-amylase activity
GO:0030979; alpha-glucan biosynthesis
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "ags1" ; product "alpha-1,4-glucan synthase Ags1" ; EC_number "3.2.1.1 ||| 2.4.1.-" ;
chromosome3 GeneDB CDS 1374172 1381404 . + . mRNA SPCC1281.01 ; colour "2" ;
chromosome3 GeneDB misc_feature 1377640 1377802 . + . misc_feature unknown_1096 ; note "nominal overlap with cosmid SPCC17A7 and cosmid SPCC338" ;
chromosome3 GeneDB misc_feature 1378345 1378567 . + . misc_feature unknown_1097 ; note "nominal overlap with cosmid SPCC1281 and cosmid SPCC17A7" ;
chromosome3 GeneDB 3'-UTR 1381405 1381763 . + . mRNA SPCC1281.01 ; ID "SPCC1281.01" ; systematic_id "SPCC1281.01" ; note "mRNA from AU012903" ;
chromosome3 GeneDB CDS_parts 1382490 1383425 . - . mRNA SPCC1281.02c ; systematic_id "SPCC1281.02c" ; colour "2" ; gene "spf30 ||| SPCC1281.02c" ; Alias "spf30" ; db_xref "SPD:13/13B06" ; GO "GO:0000244; assembly of spliceosomal tri-snRNP
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=tudor domain; date=20060918 ||| term=disease associated, motor neurone disease; date=20060918 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091123" ; primary_name "spf30" ; product "splicing factor Spf30 (predicted)" ;
chromosome3 GeneDB CDS 1382490 1383425 . - . mRNA SPCC1281.02c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1383424 1383480 . - . mRNA SPCC1281.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1281.02c" ; systematic_id "SPCC1281.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1383701 1384031 . - . mRNA SPCC1281.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1281.03c" ; systematic_id "SPCC1281.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1384032 1384613 . - . mRNA SPCC1281.03c ; systematic_id "SPCC1281.03c" ; colour "7" ; gene "SPCC1281.03c ||| emc4" ; db_xref "SPD:42/42C11" ; Alias "emc4" ; GO "GO:0033554; cellular response to stress
GO:0034975; protein folding in the endoplasmic reticulum
GO:0072546; ER membrane protein complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL231C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "emc4" ; product "ER membrane protein complex subunit 4 (predicted)" ;
chromosome3 GeneDB CDS 1384032 1384613 . - . mRNA SPCC1281.03c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1384612 1384966 . - . mRNA SPCC1281.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1281.03c" ; systematic_id "SPCC1281.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1386802 1387803 . + . mRNA SPCC1281.04 ; db_xref "SPD:14/14G03" ; systematic_id "SPCC1281.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR127W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0050236; pyridoxine 4-dehydrogenase activity
GO:0042821; pyridoxal biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPCC1281.04" ; product "pyridoxal reductase (predicted)" ; EC_number "1.1.1.65" ;
chromosome3 GeneDB CDS 1386802 1387803 . + . mRNA SPCC1281.04 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1388762 1388797 . + . mRNA SPCC1281.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1281.05" ; systematic_id "SPCC1281.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1388798 1389970 . + . mRNA SPCC1281.05 ; systematic_id "SPCC1281.05" ; colour "2" ; gene "rsc7 ||| SPCC1281.05" ; Alias "rsc7" ; db_xref "SPD:18/18F02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=AT hook protein; qualifier=inferred from context; date=20070523 ||| term=orthologous to S. cerevisiae YMR091C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0016586; RSC complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0032569; specific transcription from RNA polymerase II promoter" ; primary_name "rsc7" ; product "RSC complex subunit Rsc7" ; reserved_name "rsc7" ;
chromosome3 GeneDB CDS 1388798 1389970 . + . mRNA SPCC1281.05 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1389971 1392061 . + . mRNA SPCC1281.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1281.05" ; systematic_id "SPCC1281.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1392611 1392689 . - . mRNA SPCC1281.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1281.06c" ; systematic_id "SPCC1281.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1392690 1394129 . - . mRNA SPCC1281.06c ; db_xref "SPD:23/23C01" ; systematic_id "SPCC1281.06c" ; colour "7" ; GO "GO:0006633; fatty acid biosynthesis
GO:0004768; stearoyl-CoA 9-desaturase activity
GO:0005789; endoplasmic reticulum membrane
GO:0006636; fatty acid desaturation
GO:0031227; intrinsic to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; date=20100406 ||| term=orthologous to S. cerevisiae YGL055W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, conserved in Vertebrates; date=20100824 ||| term=human SCD and SCD5 ortholog; date=20100824" ; gene "SPCC1281.06c" ; product "acyl-coA desaturase (predicted)" ;
chromosome3 GeneDB CDS 1392690 1394129 . - . mRNA SPCC1281.06c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1394128 1394865 . - . mRNA SPCC1281.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1281.06c" ; systematic_id "SPCC1281.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 1394166 1397588 . - . misc_feature unknown_1098 ; note "low complexity gene free region" ;
chromosome3 GeneDB 3'-UTR 1397232 1397624 . - . mRNA SPCC1281.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1281.07c" ; systematic_id "SPCC1281.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1397625 1398566 . - . mRNA SPCC1281.07c ; db_xref "SPD:13/13C01" ; systematic_id "SPCC1281.07c" ; colour "7" ; GO "GO:0004364; glutathione transferase activity
GO:0033554; cellular response to stress" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR251W and YGR154c and YKR076W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPCC1281.07c" ; product "glutathione S-transferase Gst3 (predicted)" ;
chromosome3 GeneDB CDS 1397625 1398566 . - . mRNA SPCC1281.07c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1398565 1398716 . - . mRNA SPCC1281.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1281.07c" ; systematic_id "SPCC1281.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1399379 1400476 . + . mRNA SPCC1281.08 ; systematic_id "SPCC1281.08" ; colour "12" ; db_xref "SPD:17/17C01" ; Alias "wtf11" ; synonym "meu24" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; db_xref=PMID:11376151; date=20100605" ; primary_name "wtf11" ; product "wtf element Wtf11" ;
chromosome3 GeneDB CDS 1399379 1399535 . + . mRNA SPCC1281.08 ; colour "12" ;
chromosome3 GeneDB CDS 1399698 1400018 . + . mRNA SPCC1281.08 ; colour "12" ;
chromosome3 GeneDB CDS 1400066 1400296 . + . mRNA SPCC1281.08 ; colour "12" ;
chromosome3 GeneDB CDS 1400335 1400387 . + . mRNA SPCC1281.08 ; colour "12" ;
chromosome3 GeneDB CDS 1400444 1400476 . + . mRNA SPCC1281.08 ; colour "12" ;
chromosome3 GeneDB misc_feature 1399536 1399541 . + . misc_feature unknown_1099 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1399684 1399697 . + . misc_feature unknown_1100 ; colour "6" ; note "ttaactattcgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1400019 1400024 . + . misc_feature unknown_1101 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1400054 1400065 . + . misc_feature unknown_1102 ; colour "6" ; note "ctaattcattag, splice branch and acceptor" ;
chromosome3 GeneDB LTR 1400870 1401218 . + . LTR unknown_1103 ; colour "4" ; note "wtf ||| partial lone tf2-type LTR" ;
chromosome3 GeneDB misc_feature 1401152 1402044 . + . misc_feature unknown_1104 ; note "nominal overlap with cosmid SPCC1281 and cosmid SPCC622" ;
chromosome3 GeneDB repeat_region 1401219 1403077 . + . repeat_region wtf12 ; systematic_id "wtf12" ; note "wtf element" ;
chromosome3 GeneDB CDS_parts 1401530 1402672 . + . mRNA SPCC622.21 ; systematic_id "SPCC622.21" ; colour "12" ; gene "wtf12 ||| SPCC622.21" ; note "was originally annotated as pseudo as original prediction had frameshift and stop codon" ; Alias "wtf12" ; obsolete_name "SPCC1281.09" ; db_xref "SPD:52/52B01" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; date=20070223 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100317" ; primary_name "wtf12" ; product "wtf element Wtf12" ;
chromosome3 GeneDB CDS 1401530 1401668 . + . mRNA SPCC622.21 ; colour "12" ;
chromosome3 GeneDB CDS 1401900 1402172 . + . mRNA SPCC622.21 ; colour "12" ;
chromosome3 GeneDB CDS 1402490 1402551 . + . mRNA SPCC622.21 ; colour "12" ;
chromosome3 GeneDB CDS 1402553 1402672 . + . mRNA SPCC622.21 ; colour "12" ;
chromosome3 GeneDB 3'-UTR 1403556 1404305 . - . mRNA SPCC622.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.01c" ; systematic_id "SPCC622.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1404306 1404755 . - . mRNA SPCC622.01c ; db_xref "SPD:03/03H09" ; systematic_id "SPCC622.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "6" ; gene "SPCC622.01c" ; product "dubious" ;
chromosome3 GeneDB CDS 1404306 1404755 . - . mRNA SPCC622.01c ; colour "6" ;
chromosome3 GeneDB 5'-UTR 1404754 1404877 . - . mRNA SPCC622.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.01c" ; systematic_id "SPCC622.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1404986 1405075 . + . mRNA SPCC622.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.02" ; systematic_id "SPCC622.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1405076 1405459 . + . mRNA SPCC622.02 ; db_xref "SPD:02/02H01" ; systematic_id "SPCC622.02" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC622.02" ; product "dubious" ;
chromosome3 GeneDB CDS 1405076 1405459 . + . mRNA SPCC622.02 ; colour "6" ;
chromosome3 GeneDB 3'-UTR 1405460 1405536 . + . mRNA SPCC622.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.02" ; systematic_id "SPCC622.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1405969 1406367 . - . mRNA SPCC622.03c ; db_xref "SPD:42/42A11" ; systematic_id "SPCC622.03c" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101 ||| term=similar to S. pombe SPCC622.06c; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101" ; colour "6" ; gene "SPCC622.03c" ; product "dubious" ;
chromosome3 GeneDB CDS 1405969 1406367 . - . mRNA SPCC622.03c ; colour "6" ;
chromosome3 GeneDB CDS_parts 1406677 1407099 . + . mRNA SPCC622.04 ; db_xref "SPD:03/03E01" ; systematic_id "SPCC622.04" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC622.04" ; product "dubious" ;
chromosome3 GeneDB CDS 1406677 1407099 . + . mRNA SPCC622.04 ; colour "6" ;
chromosome3 GeneDB CDS_parts 1408164 1408511 . + . mRNA SPCC622.05 ; db_xref "SPD:02/02B11" ; systematic_id "SPCC622.05" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC622.05" ; product "dubious" ;
chromosome3 GeneDB CDS 1408164 1408511 . + . mRNA SPCC622.05 ; colour "6" ;
chromosome3 GeneDB CDS_parts 1408816 1409184 . - . mRNA SPCC622.06c ; db_xref "SPD:02/02E12" ; systematic_id "SPCC622.06c" ; controlled_curation "term=similar to S. pombe SPCC622.03c; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC622.06c" ; product "dubious" ; note "low complexity gene free region" ;
chromosome3 GeneDB CDS 1408816 1409184 . - . mRNA SPCC622.06c ; colour "6" ;
chromosome3 GeneDB 5'-UTR 1409183 1409330 . - . mRNA SPCC622.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.06c" ; systematic_id "SPCC622.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1409385 1409496 . + . mRNA SPCC622.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.07" ; systematic_id "SPCC622.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1409497 1409883 . + . mRNA SPCC622.07 ; db_xref "SPD:02/02H04" ; systematic_id "SPCC622.07" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC622.07" ; product "dubious" ;
chromosome3 GeneDB CDS 1409497 1409883 . + . mRNA SPCC622.07 ; colour "6" ;
chromosome3 GeneDB 3'-UTR 1409884 1409992 . + . mRNA SPCC622.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.07" ; systematic_id "SPCC622.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1411257 1411523 . - . mRNA SPCC622.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.08c" ; systematic_id "SPCC622.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1411524 1411922 . - . mRNA SPCC622.08c ; Alias "hta1" ; systematic_id "SPCC622.08c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBL003C and YDR225W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; residue=S129; db_xref=PMID:15226425; date=20090213 ||| term=target of Bub1; qualifier=phosphorylated_by; db_xref=PMID:19965387; date=20101116" ; GO "GO:0042770; DNA damage response, signal transduction
GO:0006975; DNA damage induced protein phosphorylation
GO:0034501; protein localization to kinetochore
GO:0034501; protein localization to kinetochore" ; gene "hta1 ||| SPCC622.08c" ; primary_name "hta1" ; product "histone H2A alpha" ;
chromosome3 GeneDB CDS 1411524 1411922 . - . mRNA SPCC622.08c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1411921 1412137 . - . mRNA SPCC622.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.08c" ; systematic_id "SPCC622.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1412387 1412483 . + . mRNA SPCC622.09 ; ID "SPCC622.09" ; systematic_id "SPCC622.09" ; note "mRNA from AU010164" ;
chromosome3 GeneDB CDS_parts 1412484 1412864 . + . mRNA SPCC622.09 ; systematic_id "SPCC622.09" ; colour "2" ; gene "htb1 ||| SPCC622.09" ; db_xref "SPD:02/02G12" ; Alias "htb1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBL002W and YDR224C; date=19700101 ||| term=modification, ubiquitinated; residue=K119; cv=pt_mod; db_xref=PMID:17374714; evidence=IDA; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, ubiquitinated; cv=pt_mod; date=20100311" ; primary_name "htb1" ; product "histone H2B Htb1" ;
chromosome3 GeneDB CDS 1412484 1412864 . + . mRNA SPCC622.09 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1412865 1413621 . + . mRNA SPCC622.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.09" ; systematic_id "SPCC622.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1413637 1416150 . - . mRNA SPCC622.10c ; systematic_id "SPCC622.10c" ; colour "7" ; gene "SPCC622.10c" ; note "similar to A. gossypii AGL158C (fasta), A. gossypii AGL158C is syntentic ortholog of S. cerevisiae YDR166C, similarity also from PSI Blast with S. cerevisiae YDR166, but not detectable via Blast or Fasta" ; db_xref "SPD:29/29B08" ; GO "GO:0000145; exocyst
GO:0006887; exocytosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR166C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "exocyst complex subunit Sec5 (predicted)" ;
chromosome3 GeneDB CDS 1413637 1415911 . - . mRNA SPCC622.10c ; colour "7" ;
chromosome3 GeneDB CDS 1415978 1416150 . - . mRNA SPCC622.10c ; colour "7" ;
chromosome3 GeneDB misc_feature 1415912 1415924 . - . misc_feature unknown_1105 ; colour "6" ; note "ctaacgattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1415972 1415977 . - . misc_feature unknown_1106 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 1417100 1418983 . + . mRNA SPCC622.11 ; db_xref "SPD:26/26D08" ; systematic_id "SPCC622.11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPCC622.11" ; product "LMBR1-like membrane protein" ;
chromosome3 GeneDB CDS 1417100 1417438 . + . mRNA SPCC622.11 ; colour "10" ;
chromosome3 GeneDB CDS 1417634 1418983 . + . mRNA SPCC622.11 ; colour "10" ;
chromosome3 GeneDB misc_feature 1417439 1417444 . + . misc_feature unknown_1107 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1417619 1417633 . + . misc_feature unknown_1108 ; colour "6" ; note "ctaacttatttgtag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1419342 1419456 . - . mRNA SPCC622.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.12c" ; systematic_id "SPCC622.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1419457 1420812 . - . mRNA SPCC622.12c ; systematic_id "SPCC622.12c" ; colour "7" ; db_xref "KEGG:MAP00251; ||| KEGG:MAP00910; ||| SPD:21/21A10" ; Alias "gdh1" ; GO "GO:0006537; glutamate biosynthesis
GO:0004354; glutamate dehydrogenase (NADP+) activity
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0019676; ammonia assimilation cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR375C and YAL062W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "gdh1" ; product "NADP-specific glutamate dehydrogenase Gdh1 (predicted)" ; EC_number "1.4.1.4" ;
chromosome3 GeneDB CDS 1419457 1420812 . - . mRNA SPCC622.12c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1420813 1420939 . - . mRNA SPCC622.12c ; ID "SPCC622.12c" ; db_xref "EMBL:D89153" ; systematic_id "SPCC622.12c" ;
chromosome3 GeneDB CDS_parts 1422550 1425846 . - . mRNA SPCC622.13c ; systematic_id "SPCC622.13c" ; colour "2" ; gene "SPCC622.13c ||| tti1" ; Alias "tti1" ; db_xref "SPD:48/48B09" ; GO "GO:0005515; protein binding
GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=HEAT repeat; date=20091118" ; primary_name "tti1" ; product "Tel Two Interacting protein 1" ;
chromosome3 GeneDB CDS 1422550 1425846 . - . mRNA SPCC622.13c ; colour "2" ;
chromosome3 GeneDB misc_RNA 1426432 1426937 . + . misc_RNA SPNCRNA.493 ; db_xref "PMID:18488015" ; synonym "SPNG2419" ; systematic_id "SPNCRNA.493" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 1427096 1427097 . + . mRNA SPCC622.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.14" ; systematic_id "SPCC622.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1427098 1428522 . + . mRNA SPCC622.14 ; db_xref "SPD:44/44F04" ; systematic_id "SPCC622.14" ; colour "7" ; GO "GO:0005096; GTPase activator activity
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL204C and YDL226C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC622.14" ; product "GTPase activating protein (predicted)" ;
chromosome3 GeneDB CDS 1427098 1427310 . + . mRNA SPCC622.14 ; colour "7" ;
chromosome3 GeneDB CDS 1427632 1427709 . + . mRNA SPCC622.14 ; colour "7" ;
chromosome3 GeneDB CDS 1427788 1428216 . + . mRNA SPCC622.14 ; colour "7" ;
chromosome3 GeneDB CDS 1428277 1428522 . + . mRNA SPCC622.14 ; colour "7" ;
chromosome3 GeneDB misc_feature 1427311 1427316 . + . misc_feature unknown_1109 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1427617 1427631 . + . misc_feature unknown_1110 ; colour "6" ; note "ctaacttctatacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1427710 1427715 . + . misc_feature unknown_1111 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1427773 1427787 . + . misc_feature unknown_1112 ; colour "6" ; note "ctaacacattttaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1428261 1428276 . + . misc_feature unknown_1113 ; colour "6" ; note "ctgactctgtttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1428523 1429021 . + . mRNA SPCC622.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.14" ; systematic_id "SPCC622.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1428855 1429105 . - . mRNA SPCC622.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.15c" ; systematic_id "SPCC622.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1429106 1430779 . - . mRNA SPCC622.15c ; db_xref "SPD:35/35A10" ; systematic_id "SPCC622.15c" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan, uncharacterised; date=20090114 ||| term=species distribution, sequence orphan; date=20090114 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPCC622.15c" ; product "sequence orphan" ; note "this was previously annotated as the ortholog Sae2p but was incorrect prediction" ;
chromosome3 GeneDB CDS 1429106 1430779 . - . mRNA SPCC622.15c ; colour "8" ;
chromosome3 GeneDB 5'-UTR 1430778 1430837 . - . mRNA SPCC622.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.15c" ; systematic_id "SPCC622.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1431222 1431698 . - . mRNA SPCC622.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.16c" ; systematic_id "SPCC622.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1431699 1434545 . - . mRNA SPCC622.16c ; systematic_id "SPCC622.16c" ; colour "2" ; gene "epe1 ||| SPCC622.16c" ; Alias "epe1" ; db_xref "SPD:29/29E12" ; synonym "kdm2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=jmjC domain; date=19700101 ||| term=orthologous to S. cerevisiae YER051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005720; nuclear heterochromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0006338; chromatin remodeling
GO:0000070; mitotic sister chromatid segregation
GO:0001672; regulation of chromatin assembly or disassembly
GO:0090052; regulation of chromatin silencing at centromere
GO:0090054; regulation of chromatin silencing at silent mating-type cassette
GO:0031454; regulation of extent of heterochromatin formation
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "epe1" ; product "Jmjc domain chromatin associated protein Epe1" ;
chromosome3 GeneDB CDS 1431699 1434545 . - . mRNA SPCC622.16c ; colour "2" ;
chromosome3 GeneDB misc_RNA 1432003 1432625 . + . misc_RNA SPNCRNA.67 ; systematic_id "SPNCRNA.67" ; gene "prl67" ; note "antisense" ; db_xref "EMBL:AB084879 ||| PMID:12597277" ; Alias "prl67" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl67" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB 5'-UTR 1434544 1435016 . - . mRNA SPCC622.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.16c" ; systematic_id "SPCC622.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1435080 1435177 . + . mRNA SPCC622.17 ; Alias "apn1" ; ID "SPCC622.17" ; systematic_id "SPCC622.17" ; primary_name "apn1" ; note "mRNA from SP33625 ||| truncated to match gene structure update" ;
chromosome3 GeneDB CDS_parts 1435178 1436649 . + . mRNA SPCC622.17 ; systematic_id "SPCC622.17" ; colour "2" ; gene "apn1 ||| SPCC622.17" ; Alias "apn1" ; db_xref "SPD:17/17C08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16857169; date=20060823 ||| term=orthologous to S. cerevisiae YKL114C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:14704348; cv=warning; date=20040413 ||| term=warning, gene structure updated; db_xref=PMID:21193357; date=20110106" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0003906; DNA-(apurinic or apyrimidinic site) lyase activity
GO:0008311; double-stranded DNA specific 3'-5' exodeoxyribonuclease activity
GO:0006284; base-excision repair" ; primary_name "apn1" ; product "AP endonuclease Apn1" ; EC_number "4.2.99.18" ;
chromosome3 GeneDB CDS 1435178 1435181 . + . mRNA SPCC622.17 ; colour "2" ;
chromosome3 GeneDB CDS 1435272 1435335 . + . mRNA SPCC622.17 ; colour "2" ;
chromosome3 GeneDB CDS 1435596 1435850 . + . mRNA SPCC622.17 ; colour "2" ;
chromosome3 GeneDB CDS 1435923 1436649 . + . mRNA SPCC622.17 ; colour "2" ;
chromosome3 GeneDB intron 1435851 1435922 . + . intron SPCC622.17 ; Alias "apn1" ; systematic_id "SPCC622.17" ; primary_name "apn1" ; note "intron confirmed by EMBL:AY483157" ;
chromosome3 GeneDB CDS_parts 1437153 1437740 . + . mRNA SPCC622.18 ; systematic_id "SPCC622.18" ; colour "7" ; gene "rpl6 ||| SPCC622.18" ; Alias "rpl6" ; db_xref "SPD:06/06D11" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML073C and YLR448W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl6" ; product "60S ribosomal protein L6 (predicted)" ;
chromosome3 GeneDB CDS 1437153 1437740 . + . mRNA SPCC622.18 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1437741 1437930 . + . mRNA SPCC622.18 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.18" ; systematic_id "SPCC622.18" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1438206 1438374 . + . mRNA SPCC622.19 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC622.19" ; systematic_id "SPCC622.19" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1438375 1439839 . + . mRNA SPCC622.19 ; systematic_id "SPCC622.19" ; colour "7" ; gene "SPCC622.19 ||| jmj4 ||| mug149" ; Alias "jmj4" ; db_xref "SPD:23/23E12" ; synonym "mug149" ; GO "GO:0045449; regulation of transcription
GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0032452; histone demethylase activity
GO:0016577; histone demethylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=jmjC domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "jmj4" ; product "Jmj4 protein (predicted)" ; reserved_name "jmj4" ;
chromosome3 GeneDB CDS 1438375 1438399 . + . mRNA SPCC622.19 ; colour "7" ;
chromosome3 GeneDB CDS 1438443 1439839 . + . mRNA SPCC622.19 ; colour "7" ;
chromosome3 GeneDB misc_feature 1438400 1438405 . + . misc_feature unknown_1114 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1438430 1438442 . + . misc_feature unknown_1115 ; colour "6" ; note "ctaacgaaagcag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 1440089 1441994 . - . mRNA SPCC61.01c ; systematic_id "SPCC61.01c" ; colour "2" ; gene "str2 ||| SPCC61.01c ||| SPCC622.20c" ; Alias "str2" ; db_xref "SPD:26/26F03" ; synonym "SPCC622.20c" ; GO "GO:0016021; integral to membrane
GO:0015344; siderophore-iron (ferrioxamine) uptake transporter activity
GO:0033214; iron assimilation by chelation and transport
GO:0006879; iron ion homeostasis
GO:0015892; siderophore-iron transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL040C and YHL047C and YOL158C and YKR106W and YCL073C and YEL065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "str2" ; product "siderophore-iron transporter Str2" ;
chromosome3 GeneDB CDS 1440089 1441670 . - . mRNA SPCC61.01c ; colour "2" ;
chromosome3 GeneDB CDS 1441783 1441994 . - . mRNA SPCC61.01c ; colour "2" ;
chromosome3 GeneDB misc_feature 1441311 1442052 . + . misc_feature unknown_1116 ; note "nominal overlap with cosmid SPCC622 and cosmid SPCC61" ;
chromosome3 GeneDB misc_feature 1441671 1441694 . - . misc_feature unknown_1117 ; colour "6" ; note "ctaacacaatgtcttctcttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1441777 1441782 . - . misc_feature unknown_1118 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1441993 1442001 . - . mRNA SPCC61.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC61.01c" ; systematic_id "SPCC61.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1442991 1443001 . + . mRNA SPCC61.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC61.02" ; systematic_id "SPCC61.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1443002 1443925 . + . mRNA SPCC61.02 ; systematic_id "SPCC61.02" ; colour "2" ; gene "spt3 ||| SPCC61.02" ; Alias "spt3" ; db_xref "SPD:12/12H05" ; GO "GO:0003712; transcription cofactor activity
GO:0016573; histone acetylation
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YDR392W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spt3" ; product "SAGA complex subunit Spt3" ;
chromosome3 GeneDB CDS 1443002 1443925 . + . mRNA SPCC61.02 ; colour "2" ;
chromosome3 GeneDB CDS_parts 1444653 1445636 . + . mRNA SPCC61.03 ; db_xref "SPD:14/14C06" ; systematic_id "SPCC61.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL151C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CARKD ortholog; date=20100728" ; colour "10" ; gene "SPCC61.03" ; product "carbohydrate kinase domain family protein" ;
chromosome3 GeneDB CDS 1444653 1445636 . + . mRNA SPCC61.03 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 1445637 1445796 . + . mRNA SPCC61.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC61.03" ; systematic_id "SPCC61.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1446343 1447377 . - . mRNA SPCC61.04c ; db_xref "SPD:15/15F10" ; systematic_id "SPCC61.04c" ; colour "7" ; GO "GO:0000139; Golgi membrane
GO:0051020; GTPase binding
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0048280; vesicle fusion with Golgi apparatus
GO:0005789; endoplasmic reticulum membrane
GO:0017137; Rab GTPase binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Yip1 family; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR172C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC61.04c" ; product "Rab GTPase binding (predicted)" ;
chromosome3 GeneDB CDS 1446343 1446511 . - . mRNA SPCC61.04c ; colour "7" ;
chromosome3 GeneDB CDS 1446615 1446907 . - . mRNA SPCC61.04c ; colour "7" ;
chromosome3 GeneDB CDS 1447156 1447377 . - . mRNA SPCC61.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 1446512 1446529 . - . misc_feature unknown_1119 ; colour "6" ; note "ctaactgtatctttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1446609 1446614 . - . misc_feature unknown_1120 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1446908 1446923 . - . misc_feature unknown_1121 ; colour "6" ; note "ctaacttcttcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1447150 1447155 . - . misc_feature unknown_1122 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1447376 1447392 . - . mRNA SPCC61.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC61.04c" ; systematic_id "SPCC61.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1449606 1451015 . + . mRNA SPCC61.05 ; db_xref "SPD:21/21G07" ; systematic_id "SPCC61.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPCC61.05" ; product "S. pombe specific multicopy membrane protein family 1" ;
chromosome3 GeneDB CDS 1449606 1451015 . + . mRNA SPCC61.05 ; colour "12" ;
chromosome3 GeneDB 5'-UTR 1451790 1453241 . + . mRNA SPCC11E10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC11E10.01" ; systematic_id "SPCC11E10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1453242 1454414 . + . mRNA SPCC11E10.01 ; systematic_id "SPCC11E10.01" ; colour "7" ; gene "SPCC61.06 ||| SPCC11E10.01" ; Alias "SPCC61.06" ; db_xref "KEGG:MAP00271; ||| KEGG:MAP00272; ||| KEGG:MAP00920; ||| SPD:40/40D04" ; synonym "SPCC61.06" ; GO "GO:0019279; methionine biosynthesis from L- homoserine via cystathione
GO:0004121; cystathionine beta-lyase activity
GO:0005777; peroxisome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL184C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPCC61.06" ; product "cystathionine beta-lyase (predicted)" ; EC_number "4.4.1.8" ;
chromosome3 GeneDB CDS 1453242 1454414 . + . mRNA SPCC11E10.01 ; colour "7" ;
chromosome3 GeneDB misc_feature 1453542 1453545 . + . misc_feature unknown_1123 ; note "nominal overlap with cosmid SPCC61 and cosmid SPCC11E10" ;
chromosome3 GeneDB 3'-UTR 1454415 1454540 . + . mRNA SPCC11E10.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC11E10.01" ; systematic_id "SPCC11E10.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1454541 1454815 . - . mRNA SPCC11E10.02c ; ID "SPCC11E10.02c" ; systematic_id "SPCC11E10.02c" ; note "mRNA from SPO250428" ;
chromosome3 GeneDB CDS_parts 1454816 1455958 . - . mRNA SPCC11E10.02c ; systematic_id "SPCC11E10.02c" ; colour "2" ; gene "gpi8 ||| SPCC11E10.02c" ; Alias "gpi8" ; db_xref "SPD:18/18A12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11124699; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR331W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complements S. cerevisiae GPI8; db_xref=PMID:17072883; date=20101012" ; GO "GO:0042765; GPI-anchor transamidase complex
GO:0003923; GPI-anchor transamidase activity
GO:0004197; cysteine-type endopeptidase activity
GO:0016255; attachment of GPI anchor to protein" ; primary_name "gpi8" ; product "pig-K" ; EC_number "3.4.17.2" ;
chromosome3 GeneDB CDS 1454816 1455958 . - . mRNA SPCC11E10.02c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1455959 1456141 . - . mRNA SPCC11E10.02c ; ID "SPCC11E10.02c" ; systematic_id "SPCC11E10.02c" ; note "mRNA from SPO250428" ;
chromosome3 GeneDB CDS_parts 1456436 1457491 . + . mRNA SPCC11E10.03 ; systematic_id "SPCC11E10.03" ; colour "2" ; gene "mug1 ||| SPCC11E10.03" ; Alias "mug1" ; db_xref "SPD:16/16B10" ; GO "GO:0005869; dynactin complex
GO:0000132; establishment of mitotic spindle orientation
GO:0045132; meiotic chromosome segregation
GO:0007097; nuclear migration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; date=20060207 ||| term=orthologous to S. cerevisiae YMR294W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug1" ; product "dynactin complex subunit, dynamitin (predicted)" ;
chromosome3 GeneDB CDS 1456436 1457491 . + . mRNA SPCC11E10.03 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1457842 1457860 . + . mRNA SPCC11E10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC11E10.04" ; systematic_id "SPCC11E10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1457861 1459192 . + . mRNA SPCC11E10.04 ; db_xref "SPD:20/20F04" ; systematic_id "SPCC11E10.04" ; colour "7" ; GO "GO:0006412; protein biosynthesis
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR282C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC11E10.04" ; product "mitochondrial ATPase expression protein homolog (predicted)" ;
chromosome3 GeneDB CDS 1457861 1459192 . + . mRNA SPCC11E10.04 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1459193 1459437 . + . mRNA SPCC11E10.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC11E10.04" ; systematic_id "SPCC11E10.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1460261 1460508 . - . mRNA SPCC11E10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC11E10.05c" ; systematic_id "SPCC11E10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1460509 1462227 . - . mRNA SPCC11E10.05c ; systematic_id "SPCC11E10.05c" ; colour "2" ; gene "ynd1 ||| SPCC11E10.05c" ; Alias "ynd1" ; db_xref "SPD:35/35F03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER005W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12686557; date=19700101 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0017110; nucleoside-diphosphatase activity
GO:0005794; Golgi apparatus
GO:0035268; protein amino acid mannosylation
GO:0047429; nucleoside-triphosphate diphosphatase activity" ; primary_name "ynd1" ; product "nucleoside diphosphatase Ynd1" ; EC_number "3.6.1.6 ||| 3.6.1.5 ||| 3.6.1.19" ;
chromosome3 GeneDB CDS 1460509 1462227 . - . mRNA SPCC11E10.05c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1462226 1462351 . - . mRNA SPCC11E10.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC11E10.05c" ; systematic_id "SPCC11E10.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1463176 1463252 . - . mRNA SPCC11E10.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC11E10.06c" ; systematic_id "SPCC11E10.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1463253 1464338 . - . mRNA SPCC11E10.06c ; db_xref "SPD:16/16H10" ; systematic_id "SPCC11E10.06c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006400; tRNA modification
GO:0033588; Elongator holoenzyme complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL101W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC11E10.06c" ; product "elongator complex subunit Elp4 (predicted)" ;
chromosome3 GeneDB CDS 1463253 1464338 . - . mRNA SPCC11E10.06c ; colour "7" ;
chromosome3 GeneDB CDS_parts 1464773 1466006 . - . mRNA SPCC11E10.07c ; db_xref "SPD:19/19F10" ; systematic_id "SPCC11E10.07c" ; colour "7" ; GO "GO:0003743; translation initiation factor activity
GO:0006413; translational initiation
GO:0005851; eukaryotic translation initiation factor 2B complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, leukoencephalopathy; date=20060926 ||| term=orthologous to S. cerevisiae YKR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20060926" ; gene "SPCC11E10.07c" ; product "translation initiation factor eIF2B alpha subunit (predicted)" ;
chromosome3 GeneDB CDS 1464773 1465061 . - . mRNA SPCC11E10.07c ; colour "7" ;
chromosome3 GeneDB CDS 1465158 1465600 . - . mRNA SPCC11E10.07c ; colour "7" ;
chromosome3 GeneDB CDS 1465656 1465795 . - . mRNA SPCC11E10.07c ; colour "7" ;
chromosome3 GeneDB CDS 1465853 1466006 . - . mRNA SPCC11E10.07c ; colour "7" ;
chromosome3 GeneDB misc_feature 1465062 1465075 . - . misc_feature unknown_1124 ; colour "6" ; note "ctaacgttttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1465152 1465157 . - . misc_feature unknown_1125 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1465601 1465620 . - . misc_feature unknown_1126 ; colour "6" ; note "ctaattctccacggctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1465650 1465655 . - . misc_feature unknown_1127 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1465796 1465813 . - . misc_feature unknown_1128 ; colour "6" ; note "ctgatgtttttctattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1465847 1465852 . - . misc_feature unknown_1129 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB LTR 1466109 1466416 . - . LTR unknown_1130 ; note "TF2 type LTR" ;
chromosome3 GeneDB LTR 1466447 1466627 . + . LTR unknown_1131 ; note "LTR fragment" ;
chromosome3 GeneDB 5'-UTR 1467695 1468173 . + . mRNA SPCC11E10.08 ; ID "SPCC11E10.08" ; systematic_id "SPCC11E10.08" ; note "mRNA from AU006880" ;
chromosome3 GeneDB CDS_parts 1468174 1471296 . + . mRNA SPCC11E10.08 ; systematic_id "SPCC11E10.08" ; colour "2" ; gene "rik1 ||| SPCC11E10.08" ; Alias "rik1" ; db_xref "SPD:47/47H06" ; GO "GO:0043494; Rik1-E3 ubiquitin ligase complex
GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0007535; donor selection
GO:0030989; horsetail nuclear movement
GO:0051572; negative regulation of histone H3-K4 methylation
GO:0051574; positive regulation of histone H3-K9 methylation
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0045141; telomere clustering
GO:0000723; telomere maintenance
GO:0035391; maintenance of chromatin silencing at silent mating-type cassette" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=rik1/ddb1 subfamily; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rik1" ; product "silencing protein Rik1" ;
chromosome3 GeneDB CDS 1468174 1471296 . + . mRNA SPCC11E10.08 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1471297 1471426 . + . mRNA SPCC11E10.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC11E10.08" ; systematic_id "SPCC11E10.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1471480 1471780 . - . mRNA SPCC11E10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC11E10.09c" ; systematic_id "SPCC11E10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1471781 1473326 . - . mRNA SPCC11E10.09c ; systematic_id "SPCC11E10.09c" ; colour "7" ; gene "SPCC11E10.09c ||| SPCC188.01c" ; db_xref "SPD:51/51E01" ; synonym "SPCC188.01c" ; GO "GO:0009986; cell surface
GO:0004556; alpha-amylase activity
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; product "alpha-amylase homolog (predicted)" ; EC_number "3.2.1.1" ;
chromosome3 GeneDB CDS 1471781 1471813 . - . mRNA SPCC11E10.09c ; colour "7" ;
chromosome3 GeneDB CDS 1471857 1472300 . - . mRNA SPCC11E10.09c ; colour "7" ;
chromosome3 GeneDB CDS 1472367 1473326 . - . mRNA SPCC11E10.09c ; colour "7" ;
chromosome3 GeneDB misc_feature 1471814 1471828 . - . misc_feature unknown_1132 ; colour "6" ; note "ctaacaatttttaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1471851 1471856 . - . misc_feature unknown_1133 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1472301 1472315 . - . misc_feature unknown_1134 ; colour "6" ; note "ttaacatttatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1472361 1472366 . - . misc_feature unknown_1135 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1472717 1475275 . + . misc_feature unknown_1136 ; note "nominal overlap with cosmid SPCC188 and cosmid SPCC11E10" ;
chromosome3 GeneDB 5'-UTR 1473325 1473462 . - . mRNA SPCC11E10.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC11E10.09c" ; systematic_id "SPCC11E10.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB rRNA 1474219 1474427 . - . rRNA SPRRNA.04 ; systematic_id "SPRRNA.04" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.04" ; product "5S rRNA" ; note "and flanks" ;
chromosome3 GeneDB tRNA 1475034 1475116 . + . tRNA SPCTRNALYS.12 ; systematic_id "SPCTRNALYS.12" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033417; CTT codon-amino acid adaptor activity" ; gene "SPCTRNALYS.12" ; product "tRNA Lysine" ; note "tRNA Lys anticodon CTT, Cove score 74.69" ;
chromosome3 GeneDB intron 1475073 1475080 . + . intron unknown_1137 ; note "intron tRNA Lys anticodon CTT" ;
chromosome3 GeneDB 5'-UTR 1475605 1475776 . + . mRNA SPCC188.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC188.02" ; systematic_id "SPCC188.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1475777 1477978 . + . mRNA SPCC188.02 ; systematic_id "SPCC188.02" ; colour "2" ; gene "par1 ||| SPCC188.02" ; Alias "par1" ; db_xref "SPD:51/51E08" ; GO "GO:0000159; protein phosphatase type 2A complex
GO:0031029; regulation of septation initiation signaling
GO:0033554; cellular response to stress
GO:0031030; negative regulation of septation initiation signaling
GO:0031030; negative regulation of septation initiation signaling
GO:0031030; negative regulation of septation initiation signaling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "par1" ; product "protein phosphatase regulatory subunit Par1" ;
chromosome3 GeneDB CDS 1475777 1475800 . + . mRNA SPCC188.02 ; colour "2" ;
chromosome3 GeneDB CDS 1475844 1475939 . + . mRNA SPCC188.02 ; colour "2" ;
chromosome3 GeneDB CDS 1475980 1476193 . + . mRNA SPCC188.02 ; colour "2" ;
chromosome3 GeneDB CDS 1476525 1477279 . + . mRNA SPCC188.02 ; colour "2" ;
chromosome3 GeneDB CDS 1477332 1477630 . + . mRNA SPCC188.02 ; colour "2" ;
chromosome3 GeneDB CDS 1477720 1477978 . + . mRNA SPCC188.02 ; colour "2" ;
chromosome3 GeneDB misc_feature 1475801 1475806 . + . misc_feature unknown_1138 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1475829 1475843 . + . misc_feature unknown_1139 ; colour "6" ; note "ttaaccagaatctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1475940 1475945 . + . misc_feature unknown_1140 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1475965 1475979 . + . misc_feature unknown_1141 ; colour "6" ; note "ttaacattttcatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1476194 1476199 . + . misc_feature unknown_1142 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1476508 1476524 . + . misc_feature unknown_1143 ; colour "6" ; note "ctaacctgtctatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1477280 1477285 . + . misc_feature unknown_1144 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 1477280 1477331 . + . intron SPCC188.02 ; systematic_id "SPCC188.02" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1477314 1477331 . + . misc_feature unknown_1145 ; colour "6" ; note "ctaacgatgacaatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1477631 1477636 . + . misc_feature unknown_1146 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 1477631 1477719 . + . intron SPCC188.02 ; systematic_id "SPCC188.02" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1477705 1477719 . + . misc_feature unknown_1147 ; colour "6" ; note "ctgacgttttgttag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 1478304 1481141 . + . mRNA SPCC188.03 ; systematic_id "SPCC188.03" ; colour "2" ; gene "cnd3 ||| SPCC188.03" ; Alias "cnd3" ; db_xref "SPD:51/51E11" ; GO "GO:0000796; condensin complex
GO:0007076; mitotic chromosome condensation
GO:0005634; nucleus
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10485849; date=19700101 ||| term=phenotype, cut; qualifier=deletion; db_xref=PMID:10485849; date=20100917 ||| term=orthologous to S. cerevisiae YDR325W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=HEAT repeat; date=19700101 ||| term=human NCAPG ortholog; date=20091223" ; primary_name "cnd3" ; product "condensin complex non-SMC subunit Cnd3" ;
chromosome3 GeneDB CDS 1478304 1480217 . + . mRNA SPCC188.03 ; colour "2" ;
chromosome3 GeneDB CDS 1480258 1480389 . + . mRNA SPCC188.03 ; colour "2" ;
chromosome3 GeneDB CDS 1480450 1480678 . + . mRNA SPCC188.03 ; colour "2" ;
chromosome3 GeneDB CDS 1480727 1480836 . + . mRNA SPCC188.03 ; colour "2" ;
chromosome3 GeneDB CDS 1480899 1481141 . + . mRNA SPCC188.03 ; colour "2" ;
chromosome3 GeneDB misc_feature 1480218 1480223 . + . misc_feature unknown_1148 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1480244 1480257 . + . misc_feature unknown_1149 ; colour "6" ; note "cttacaacaactag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1480390 1480395 . + . misc_feature unknown_1150 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1480435 1480449 . + . misc_feature unknown_1151 ; colour "6" ; note "ttaacagcattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1480679 1480684 . + . misc_feature unknown_1152 ; colour "6" ; note "gtgggg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1480711 1480726 . + . misc_feature unknown_1153 ; colour "6" ; note "ctaacaacaaatgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1480837 1480842 . + . misc_feature unknown_1154 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1480885 1480898 . + . misc_feature unknown_1155 ; colour "6" ; note "ctaataatgtatag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 1481138 1481966 . - . mRNA SPCC188.04c ; systematic_id "SPCC188.04c" ; colour "2" ; gene "spc25 ||| SPCC188.04c" ; Alias "spc25" ; db_xref "SPD:51/51C02" ; GO "GO:0031617; NMS complex
GO:0031262; Ndc80 complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spc25" ; product "kinetochore protein Spc25" ;
chromosome3 GeneDB CDS 1481138 1481280 . - . mRNA SPCC188.04c ; colour "2" ;
chromosome3 GeneDB CDS 1481345 1481758 . - . mRNA SPCC188.04c ; colour "2" ;
chromosome3 GeneDB CDS 1481807 1481966 . - . mRNA SPCC188.04c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1481142 1481270 . + . mRNA SPCC188.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC188.03" ; systematic_id "SPCC188.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 1481281 1481293 . - . misc_feature unknown_1156 ; colour "6" ; note "ctaatcccttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1481339 1481344 . - . misc_feature unknown_1157 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1481759 1481773 . - . misc_feature unknown_1158 ; colour "6" ; note "ttaacattgatctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1481801 1481806 . - . misc_feature unknown_1159 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 1482007 1482273 . + . mRNA SPCC188.05 ; systematic_id "SPCC188.05" ; colour "6" ; gene "SPCC188.05" ; product "dubious" ;
chromosome3 GeneDB CDS 1482007 1482273 . + . mRNA SPCC188.05 ; colour "6" ;
chromosome3 GeneDB 3'-UTR 1483031 1483087 . - . mRNA SPCC188.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC188.06c" ; systematic_id "SPCC188.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1483088 1485136 . - . mRNA SPCC188.06c ; systematic_id "SPCC188.06c" ; colour "2" ; gene "srp54 ||| SPCC188.06c" ; Alias "srp54" ; db_xref "SPD:51/51E05" ; GO "GO:0005786; signal recognition particle (sensu Eukaryota)
GO:0003924; GTPase activity
GO:0006614; SRP-dependent cotranslational protein targeting to membrane
GO:0008312; 7S RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7969124; date=19700101 ||| term=orthologous to S. cerevisiae YPR088C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "srp54" ; product "signal recognition particle subunit Srp54" ;
chromosome3 GeneDB CDS 1483088 1484578 . - . mRNA SPCC188.06c ; colour "2" ;
chromosome3 GeneDB CDS 1485059 1485136 . - . mRNA SPCC188.06c ; colour "2" ;
chromosome3 GeneDB misc_feature 1484579 1484595 . - . misc_feature unknown_1160 ; colour "6" ; note "ctaataattttatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1485053 1485058 . - . misc_feature unknown_1161 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1485135 1485176 . - . mRNA SPCC188.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC188.06c" ; systematic_id "SPCC188.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1486167 1486302 . + . mRNA SPCC188.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC188.07" ; systematic_id "SPCC188.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1486303 1488510 . + . mRNA SPCC188.07 ; systematic_id "SPCC188.07" ; colour "2" ; db_xref "SPD:51/51E09" ; Alias "ccq1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=diploid; db_xref=PMID:15546621; date=20100727 ||| term=HEAT repeat; evidence=TAS; db_xref=PMID:15546621; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YDR295C and YPR179C; date=19700101 ||| term=name description, Coiled Coil protein Quantitatively enriched; date=20091112" ; GO "GO:0070188; Stn1-Ten1 complex
GO:0000781; chromosome, telomeric region
GO:0000781; chromosome, telomeric region
GO:0005654; nucleoplasm
GO:0005816; spindle pole body
GO:0031933; telomeric heterochromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0006348; chromatin silencing at telomere
GO:0045132; meiotic chromosome segregation
GO:0048239; negative regulation of DNA recombination at the telomeres
GO:0032206; positive regulation of telomere maintenance
GO:0045141; telomere clustering
GO:0016233; telomere end protection
GO:0000723; telomere maintenance" ; primary_name "ccq1" ; product "telomere maintenance protein Ccq1" ;
chromosome3 GeneDB CDS 1486303 1488510 . + . mRNA SPCC188.07 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1488511 1488586 . + . mRNA SPCC188.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC188.07" ; systematic_id "SPCC188.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1488861 1488933 . - . mRNA SPCC188.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC188.08c" ; systematic_id "SPCC188.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1488934 1492390 . - . mRNA SPCC188.08c ; systematic_id "SPCC188.08c" ; colour "2" ; gene "ubp22 ||| SPCC188.08c ||| ubp5" ; Alias "ubp5" ; obsolete_name "ubp22" ; db_xref "SPD:41/41A06" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0030133; transport vesicle
GO:0005794; Golgi apparatus
GO:0005515; protein binding
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR304W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human USP7 ortholog; date=20101001" ; primary_name "ubp5" ; product "ubiquitin C-terminal hydrolase Ubp5" ;
chromosome3 GeneDB CDS 1488934 1492154 . - . mRNA SPCC188.08c ; colour "2" ;
chromosome3 GeneDB CDS 1492234 1492336 . - . mRNA SPCC188.08c ; colour "2" ;
chromosome3 GeneDB CDS 1492388 1492390 . - . mRNA SPCC188.08c ; colour "2" ;
chromosome3 GeneDB misc_feature 1492155 1492168 . - . misc_feature unknown_1162 ; colour "6" ; note "ctaacgggtcatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1492228 1492233 . - . misc_feature unknown_1163 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1492337 1492354 . - . misc_feature unknown_1164 ; colour "6" ; note "ctaacttataatgtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1492382 1492387 . - . misc_feature unknown_1165 ; colour "6" ; note "gtattg, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1492389 1492436 . - . mRNA SPCC188.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC188.08c" ; systematic_id "SPCC188.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1492938 1494767 . - . mRNA SPCC188.09c ; db_xref "SPD:46/46A02" ; systematic_id "SPCC188.09c" ; colour "10" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=GLEYA domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; qualifier=predicted|O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106" ; gene "SPCC188.09c" ; product "cell surface glycoprotein (predicted)" ;
chromosome3 GeneDB CDS 1492938 1494767 . - . mRNA SPCC188.09c ; colour "10" ;
chromosome3 GeneDB misc_feature 1494963 1494972 . + . misc_feature unknown_1166 ; note "conflict with redundant cosmid c8A4: c188 has 10, c8 A4 only has9. Eventually c8A4 will be removed completely fr om the EMBL database" ;
chromosome3 GeneDB LTR 1496536 1496879 . + . LTR unknown_1167 ; colour "4" ; note "lone degraded Tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 1497980 1500664 . - . mRNA SPCC188.10c ; db_xref "SPD:40/40H12" ; systematic_id "SPCC188.10c" ; pseudo "_no_value" ; synonym "SPCC584.07c" ; colour "13" ; controlled_curation "term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100104" ; product "pseudogene" ; note "similar to S. pombe SPCC188.09c but has 2 stop codons so is probably a pseudogene; 36 aa repeat containing" ;
chromosome3 GeneDB CDS 1497980 1500664 . - . mRNA SPCC188.10c ; colour "13" ;
chromosome3 GeneDB misc_feature 1500016 1508128 . + . misc_feature unknown_1168 ; note "nominal overlap with cosmid SPCC584, EM:AL032824 S. pombe chromosome 3" ;
chromosome3 GeneDB 5'-UTR 1502610 1502691 . + . mRNA SPCC188.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC188.11" ; systematic_id "SPCC188.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1502692 1504456 . + . mRNA SPCC188.11 ; systematic_id "SPCC188.11" ; colour "2" ; gene "prp45 ||| cwf13 ||| snw1 ||| SPCC188.11 ||| SPCC584.08" ; Alias "prp45" ; db_xref "SPD:36/36B09" ; synonym "cwf13 ||| snw1 ||| SPCC584.08" ; GO "GO:0005681; spliceosome complex
GO:0005515; protein binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; date=19700101 ||| term=orthologous to S. cerevisiae YAL032C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "prp45" ; product "splicing factor Prp45" ;
chromosome3 GeneDB CDS 1502692 1502720 . + . mRNA SPCC188.11 ; colour "2" ;
chromosome3 GeneDB CDS 1502764 1504315 . + . mRNA SPCC188.11 ; colour "2" ;
chromosome3 GeneDB CDS 1504364 1504456 . + . mRNA SPCC188.11 ; colour "2" ;
chromosome3 GeneDB misc_feature 1502721 1502726 . + . misc_feature unknown_1169 ; colour "6" ; note "gtaaac, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1502749 1502763 . + . misc_feature unknown_1170 ; colour "6" ; note "ctaacaacgccgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1504316 1504321 . + . misc_feature unknown_1171 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1504350 1504363 . + . misc_feature unknown_1172 ; colour "6" ; note "ctaacttttcttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1504457 1504592 . + . mRNA SPCC188.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC188.11" ; systematic_id "SPCC188.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1504941 1506145 . + . mRNA SPCC188.12 ; systematic_id "SPCC188.12" ; colour "7" ; gene "spn6 ||| SPCC584.09 ||| SPCC188.12" ; Alias "spn6" ; db_xref "SPD:22/22B01" ; synonym "SPCC584.09" ; GO "GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during sporulation; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe Spn4; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spn6" ; product "septin Spn6 (predicted)" ;
chromosome3 GeneDB CDS 1504941 1504999 . + . mRNA SPCC188.12 ; colour "7" ;
chromosome3 GeneDB CDS 1505062 1506145 . + . mRNA SPCC188.12 ; colour "7" ;
chromosome3 GeneDB misc_feature 1505000 1505005 . + . misc_feature unknown_1173 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1505044 1505061 . + . misc_feature unknown_1174 ; colour "6" ; note "ttaacaaatataccacag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 1506166 1510290 . - . mRNA SPCC188.13c ; systematic_id "SPCC188.13c" ; colour "2" ; gene "dcr1 ||| SPCC188.13c ||| SPCC584.10c" ; Alias "dcr1" ; db_xref "SPD:30/30F09" ; synonym "SPCC584.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=PAZ domain; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=disease associated, cancer; date=20100217 ||| term=human DICER1 ortholog; date=20100217 ||| term=phenotype, accumulation of non- coding outer repeat transcripts; cv=phenotype; date=20100318 ||| term=phenotype, siRNAs homologous to outer repeats undetectable; cv=phenotype; date=20100318" ; GO "GO:0005720; nuclear heterochromatin
GO:0005524; ATP binding
GO:0008026; ATP-dependent helicase activity
GO:0003723; RNA binding
GO:0004540; ribonuclease activity
GO:0030422; RNA interference, production of siRNA
GO:0006396; RNA processing
GO:0034613; cellular protein localization
GO:0090052; regulation of chromatin silencing at centromere
GO:0051983; regulation of chromosome segregation
GO:0035196; miRNA-mediated gene silencing, production of miRNAs
GO:0051570; regulation of histone H3-K9 methylation
GO:0031048; small RNA-mediated chromatin silencing
GO:0035389; establishment of chromatin silencing at mating-type cassette" ; primary_name "dcr1" ; product "dicer" ;
chromosome3 GeneDB CDS 1506166 1510290 . - . mRNA SPCC188.13c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1510289 1510532 . - . mRNA SPCC188.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC188.13c" ; systematic_id "SPCC188.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1511522 1511582 . - . mRNA SPCC584.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.11c" ; systematic_id "SPCC584.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1511583 1513196 . - . mRNA SPCC584.11c ; db_xref "SPD:25/25H03" ; systematic_id "SPCC584.11c" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR346C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC584.11c" ; product "Svf1 family protein Svf1" ;
chromosome3 GeneDB CDS 1511583 1512702 . - . mRNA SPCC584.11c ; colour "10" ;
chromosome3 GeneDB CDS 1513174 1513196 . - . mRNA SPCC584.11c ; colour "10" ;
chromosome3 GeneDB misc_feature 1512703 1512717 . - . misc_feature unknown_1175 ; colour "6" ; note "ctaactcgattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1513168 1513173 . - . misc_feature unknown_1176 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1513195 1513282 . - . mRNA SPCC584.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.11c" ; systematic_id "SPCC584.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 1514062 1514343 . + . misc_RNA SPNCRNA.51 ; Alias "prl51" ; db_xref "EMBL:AB084863 ||| PMID:12597277" ; systematic_id "SPNCRNA.51" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl51" ; gene "prl51" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB CDS_parts 1514795 1515142 . + . mRNA SPCC584.12 ; systematic_id "SPCC584.12" ; colour "8" ; gene "SPCC584.12 ||| mug42" ; db_xref "SPD:02/02B12" ; Alias "mug42" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=gene expression, expressed during meiosis; db_xref=PMID:16303567; date=20100607" ; primary_name "mug42" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1514795 1515142 . + . mRNA SPCC584.12 ; colour "8" ;
chromosome3 GeneDB 5'-UTR 1516197 1516385 . + . mRNA SPCC584.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.13" ; systematic_id "SPCC584.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1516386 1518020 . + . mRNA SPCC584.13 ; db_xref "SPD:26/26B04" ; systematic_id "SPCC584.13" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPCC584.13" ; product "amino acid permease (predicted)" ;
chromosome3 GeneDB CDS 1516386 1518020 . + . mRNA SPCC584.13 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1518021 1518230 . + . mRNA SPCC584.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.13" ; systematic_id "SPCC584.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1518726 1518924 . + . mRNA SPCC584.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.14" ; systematic_id "SPCC584.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1518925 1520220 . + . mRNA SPCC584.14 ; systematic_id "SPCC584.14" ; colour "10" ; gene "SPCC584.14 ||| mug160" ; db_xref "SPD:22/22E06" ; Alias "mug160" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR054C; date=19700101 ||| term=disease associated, spinocerebellar ataxia; date=20080428 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091217 ||| term=human ATXN10 ortholog; date=20100728" ; primary_name "mug160" ; product "human ATXN10 ortholog, implicated in amino acid biosynthesis" ;
chromosome3 GeneDB CDS 1518925 1520220 . + . mRNA SPCC584.14 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 1520221 1520321 . + . mRNA SPCC584.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.14" ; systematic_id "SPCC584.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1520486 1520805 . - . mRNA SPCC584.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.15c" ; systematic_id "SPCC584.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1520806 1523191 . - . mRNA SPCC584.15c ; db_xref "SPD:28/28E08" ; systematic_id "SPCC584.15c" ; colour "10" ; GO "GO:0005509; calcium ion binding
GO:0009966; regulation of signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=PY motif; qualifier=predicted; db_xref=PMID:12163175; date=19700101 ||| term=orthologous to S. cerevisiae YOR018W and YFR022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC584.15c" ; product "arrestin/PY protein 2" ; note "first intron is unsupported, it may be incorrect, CDS may need trimming to exclude this intron, or there may be another but haven't been able to improve this prediction" ;
chromosome3 GeneDB CDS 1520806 1522384 . - . mRNA SPCC584.15c ; colour "10" ;
chromosome3 GeneDB CDS 1522446 1522595 . - . mRNA SPCC584.15c ; colour "10" ;
chromosome3 GeneDB CDS 1523136 1523191 . - . mRNA SPCC584.15c ; colour "10" ;
chromosome3 GeneDB misc_feature 1522385 1522402 . - . misc_feature unknown_1177 ; colour "6" ; note "ctaacactttttttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1522440 1522445 . - . misc_feature unknown_1178 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1522596 1522613 . - . misc_feature unknown_1179 ; colour "6" ; note "ctaacttctcgtttgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1523130 1523135 . - . misc_feature unknown_1180 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1523190 1523290 . - . mRNA SPCC584.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.15c" ; systematic_id "SPCC584.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1524517 1525212 . - . mRNA SPCC584.16c ; db_xref "SPD:08/08B09" ; systematic_id "SPCC584.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC584.16c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1524517 1525212 . - . mRNA SPCC584.16c ; colour "8" ;
chromosome3 GeneDB CDS_parts 1526472 1529492 . - . mRNA SPCC584.01c ; db_xref "SPD:47/47G05" ; systematic_id "SPCC584.01c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR030W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0004783; sulfite reductase (NADPH) activity
GO:0009337; sulfite reductase complex (NADPH)
GO:0000103; sulfate assimilation
GO:0005737; cytoplasm" ; gene "SPCC584.01c" ; product "sulfite reductase NADPH flavoprotein subunit (predicted)" ; EC_number "1.8.1.2" ;
chromosome3 GeneDB CDS 1526472 1529492 . - . mRNA SPCC584.01c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1529491 1529891 . - . mRNA SPCC584.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.01c" ; systematic_id "SPCC584.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 1530150 1530498 . + . LTR unknown_1181 ; note "tf2 type LTR" ;
chromosome3 GeneDB CDS_parts 1532126 1532753 . + . mRNA SPCC584.02 ; systematic_id "SPCC584.02" ; colour "7" ; gene "cuf2 ||| SPCC584.02" ; Alias "cuf2" ; db_xref "SPD:42/42E07" ; GO "GO:0050801; ion homeostasis
GO:0003677; DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005507; copper ion binding
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR021C and YGL166W and YPR008W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "cuf2" ; product "Cu metalloregulatory transcription factor Cuf2 (predicted)" ;
chromosome3 GeneDB CDS 1532126 1532157 . + . mRNA SPCC584.02 ; colour "7" ;
chromosome3 GeneDB CDS 1532208 1532300 . + . mRNA SPCC584.02 ; colour "7" ;
chromosome3 GeneDB CDS 1532345 1532753 . + . mRNA SPCC584.02 ; colour "7" ;
chromosome3 GeneDB misc_feature 1532158 1532163 . + . misc_feature unknown_1182 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1532192 1532207 . + . misc_feature unknown_1183 ; colour "6" ; note "ttaacacttactctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1532301 1532306 . + . misc_feature unknown_1184 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1532329 1532344 . + . misc_feature unknown_1185 ; colour "6" ; note "ttaacttgaaattcag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 1533022 1534677 . - . mRNA SPCC584.03c ; db_xref "SPD:34/34G05" ; systematic_id "SPCC584.03c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0007264; small GTPase mediated signal transduction
GO:0005525; GTP binding
GO:0030695; GTPase regulator activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL164C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC584.03c" ; product "Ran GTP-binding protein (predicted)" ;
chromosome3 GeneDB CDS 1533022 1534677 . - . mRNA SPCC584.03c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1535446 1535452 . + . mRNA SPCC584.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.04" ; systematic_id "SPCC584.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1535453 1537524 . + . mRNA SPCC584.04 ; systematic_id "SPCC584.04" ; colour "2" ; gene "sup35 ||| SPCC584.04 ||| erf3" ; Alias "sup35" ; db_xref "SPD:46/46E02" ; synonym "erf3" ; GO "GO:0005829; cytosol
GO:0005525; GTP binding
GO:0046982; protein heterodimerization activity
GO:0003747; translation release factor activity
GO:0006415; translational termination
GO:0018444; translation release factor complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=complementation, functionally complements S. cerevisiae SUP35; db_xref=PMID:9701287; date=20101012" ; primary_name "sup35" ; product "translation release factor class II eRF3" ;
chromosome3 GeneDB CDS 1535453 1535582 . + . mRNA SPCC584.04 ; colour "2" ;
chromosome3 GeneDB CDS 1535666 1537524 . + . mRNA SPCC584.04 ; colour "2" ;
chromosome3 GeneDB misc_feature 1535583 1535588 . + . misc_feature unknown_1186 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1535651 1535665 . + . misc_feature unknown_1187 ; colour "6" ; note "ttaacttcttgctag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1537525 1537866 . + . mRNA SPCC584.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.04" ; systematic_id "SPCC584.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1538085 1538206 . + . mRNA SPCC584.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC584.05" ; systematic_id "SPCC584.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1538207 1540542 . + . mRNA SPCC584.05 ; systematic_id "SPCC584.05" ; colour "7" ; gene "sec1 ||| SPCC584.05" ; Alias "sec1" ; db_xref "SPD:28/28D05" ; GO "GO:0000149; SNARE binding
GO:0006904; vesicle docking during exocytosis
GO:0006906; vesicle fusion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR164C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec1" ; product "SNARE binding protein Sec1 (predicted)" ;
chromosome3 GeneDB CDS 1538207 1538234 . + . mRNA SPCC584.05 ; colour "7" ;
chromosome3 GeneDB CDS 1538273 1538313 . + . mRNA SPCC584.05 ; colour "7" ;
chromosome3 GeneDB CDS 1538530 1540542 . + . mRNA SPCC584.05 ; colour "7" ;
chromosome3 GeneDB misc_feature 1538235 1538240 . + . misc_feature unknown_1188 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1538261 1538272 . + . misc_feature unknown_1189 ; colour "6" ; note "ctaacaaataag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1538314 1538319 . + . misc_feature unknown_1190 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1538515 1538529 . + . misc_feature unknown_1191 ; colour "6" ; note "ctaacagataaatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1540675 1540947 . - . mRNA SPCC1753.01c ; Alias "ssb2" ; ID "SPCC1753.01c" ; db_xref "EMBL:U59386" ; systematic_id "SPCC1753.01c" ; primary_name "ssb2" ;
chromosome3 GeneDB misc_feature 1540899 1541818 . + . misc_feature unknown_1192 ; note "nominal overlap with cosmid SPCC584 and cosmid SPCC1753" ;
chromosome3 GeneDB CDS_parts 1540948 1541914 . - . mRNA SPCC1753.01c ; systematic_id "SPCC1753.01c" ; colour "2" ; gene "ssb2 ||| SPCC584.06c ||| SPCC1753.01c ||| rpa2" ; Alias "ssb2" ; db_xref "SPD:13/13G07" ; synonym "SPCC584.06c ||| rpa2" ; GO "GO:0003697; single-stranded DNA binding
GO:0005662; DNA replication factor A complex
GO:0006310; DNA recombination
GO:0006269; DNA replication, synthesis of RNA primer
GO:0006281; DNA repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL312W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=OB fold; date=20091106" ; primary_name "ssb2" ; product "single-stranded DNA binding protein Ssb2" ;
chromosome3 GeneDB CDS 1540948 1541661 . - . mRNA SPCC1753.01c ; colour "2" ;
chromosome3 GeneDB CDS 1541789 1541914 . - . mRNA SPCC1753.01c ; colour "2" ;
chromosome3 GeneDB misc_feature 1541662 1541681 . - . misc_feature unknown_1193 ; colour "6" ; note "ctaatttttccaatgtttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1541662 1541788 . - . intron SPCC1753.01c ; Alias "ssb2" ; db_xref "EMBL:U59386" ; systematic_id "SPCC1753.01c" ; primary_name "ssb2" ; note "confirmed by mRNA U59386" ;
chromosome3 GeneDB misc_feature 1541783 1541788 . - . misc_feature unknown_1194 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1541915 1542075 . - . mRNA SPCC1753.01c ; Alias "ssb2" ; ID "SPCC1753.01c" ; db_xref "EMBL:U59386" ; systematic_id "SPCC1753.01c" ; primary_name "ssb2" ;
chromosome3 GeneDB 3'-UTR 1542376 1543180 . - . mRNA SPCC1753.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1753.02c" ; systematic_id "SPCC1753.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1543181 1544581 . - . mRNA SPCC1753.02c ; systematic_id "SPCC1753.02c" ; colour "2" ; gene "git3 ||| SPCC1753.02c" ; Alias "git3" ; db_xref "SPD:21/21F11" ; GO "GO:0005886; plasma membrane
GO:0045014; negative regulation of transcription by glucose
GO:0007186; G-protein coupled receptor protein signaling pathway
GO:0004930; G-protein coupled receptor activity
GO:0007190; adenylate cyclase activation
GO:0051594; detection of glucose" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDL035C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505" ; primary_name "git3" ; product "G-protein coupled receptor Git3" ;
chromosome3 GeneDB CDS 1543181 1544581 . - . mRNA SPCC1753.02c ; colour "2" ;
chromosome3 GeneDB misc_feature 1546765 1547180 . - . misc_feature unknown_1195 ; note "putative RNA gene as hits dbj|AU007386|AU007386 Schi zosaccharomyces pombe cDNA, clone spc01882 but no ORF in re gion" ;
chromosome3 GeneDB misc_RNA 1546777 1547989 . + . misc_RNA SPNCRNA.132 ; Alias "tos3" ; db_xref "PMID:11156975" ; systematic_id "SPNCRNA.132" ; controlled_curation "term=; qualifier=predicted; db_xref=PMID:11156975; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:11156975; date=20050412" ; primary_name "tos3" ; gene "tos3 ||| SPNCRNA.132" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB CDS_parts 1547888 1549069 . - . mRNA SPCC1753.03c ; systematic_id "SPCC1753.03c" ; colour "2" ; gene "rec7 ||| SPCC1753.03c" ; note "deletion mutant results in frequent occurrence of two-spored asci (PMID 11156975) ||| deletion mutant results in frequent nondisjunction of homologous chromosomes at the first meiotic division (PMID 11156975)" ; Alias "rec7" ; db_xref "SPD:18/18G05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:1339382; date=19700101 ||| term=gene expression, antisense transcript detected; db_xref=PMID:11156975; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YMR133W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0030998; linear element
GO:0005634; nucleus
GO:0045143; homologous chromosome segregation
GO:0007131; meiotic recombination" ; primary_name "rec7" ; product "meiotic recombination protein Rec7" ;
chromosome3 GeneDB CDS 1547888 1548640 . - . mRNA SPCC1753.03c ; colour "2" ;
chromosome3 GeneDB CDS 1548746 1548859 . - . mRNA SPCC1753.03c ; colour "2" ;
chromosome3 GeneDB CDS 1548917 1549069 . - . mRNA SPCC1753.03c ; colour "2" ;
chromosome3 GeneDB misc_RNA 1547928 1549537 . + . misc_RNA SPNCRNA.69 ; Alias "tos1" ; db_xref "PMID:11156975" ; systematic_id "SPNCRNA.69" ; controlled_curation "term=; qualifier=predicted; db_xref=PMID:11156975; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:11156975; date=20050412" ; primary_name "tos1" ; gene "tos1" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB misc_RNA 1548349 1548897 . + . misc_RNA SPNCRNA.131 ; Alias "tos2" ; db_xref "PMID:11156975" ; systematic_id "SPNCRNA.131" ; controlled_curation "term=; qualifier=predicted; db_xref=PMID:11156975; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:11156975; date=20050412" ; primary_name "tos2" ; gene "tos2 ||| SPNCRNA.131" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB misc_feature 1548641 1548653 . - . misc_feature unknown_1196 ; colour "6" ; note "ttaataaatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1548740 1548745 . - . misc_feature unknown_1197 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1548860 1548874 . - . misc_feature unknown_1198 ; colour "6" ; note "ttaacaaacaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1548911 1548916 . - . misc_feature unknown_1199 ; colour "6" ; note "gtacgc, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1549911 1550003 . + . mRNA SPCC1753.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1753.04" ; systematic_id "SPCC1753.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1550004 1551065 . + . mRNA SPCC1753.04 ; systematic_id "SPCC1753.04" ; colour "2" ; gene "tol1 ||| SPCC1753.04" ; Alias "tol1" ; db_xref "SPD:16/16C08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for sulfite; db_xref=PMID:10850973; date=20100812 ||| term=target of lithium; date=19700101 ||| term=orthologous to S. cerevisiae YOL064C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618 ||| term=species distribution, conserved in Vertebrates; date=20090618 ||| term=species distribution, conserved in Metazoa; date=20090618 ||| term=species distribution, conserved in Bacteria; date=20090618 ||| term=human IMPA1 and IMPA2 ortholog; date=20100821 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0008441; 3'(2'),5'-bisphosphate nucleotidase activity
GO:0004441; inositol-1,4-bisphosphate 1- phosphatase activity
GO:0006790; sulfur metabolism
GO:0006555; methionine biosynthetic process" ; primary_name "tol1" ; product "3'(2'),5'-bisphosphate nucleotidase/inositol-1,4- bisphosphate 1-phosphatase" ; EC_number "3.1.3.7 ||| 3.1.3.57" ;
chromosome3 GeneDB CDS 1550004 1551065 . + . mRNA SPCC1753.04 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1551066 1551232 . + . mRNA SPCC1753.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1753.04" ; systematic_id "SPCC1753.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1551562 1551693 . + . mRNA SPCC1753.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1753.05" ; systematic_id "SPCC1753.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1551694 1552584 . + . mRNA SPCC1753.05 ; systematic_id "SPCC1753.05" ; colour "2" ; gene "rsm1 ||| SPCC1753.05" ; Alias "rsm1" ; db_xref "SPD:12/12B04" ; GO "GO:0006406; mRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15357289; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rsm1" ; product "RNA export factor Rsm1" ;
chromosome3 GeneDB CDS 1551694 1552584 . + . mRNA SPCC1753.05 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1552585 1552607 . + . mRNA SPCC1753.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1753.05" ; systematic_id "SPCC1753.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1552715 1552780 . - . mRNA SPCC162.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.12" ; systematic_id "SPCC162.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1552781 1554195 . - . mRNA SPCC162.12 ; systematic_id "SPCC162.12" ; colour "2" ; gene "SPCC1753.06c ||| SPCC162.12 ||| tco89" ; Alias "tco89" ; db_xref "SPD:21/21G09" ; synonym "SPCC1753.06c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL180W; db_xref=PMID:18076573; date=19700101 ||| term=; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0031931; TORC 1 complex
GO:0031929; TOR signaling pathway" ; primary_name "tco89" ; product "TORC1 subunit Tco89" ;
chromosome3 GeneDB CDS 1552781 1553388 . - . mRNA SPCC162.12 ; colour "2" ;
chromosome3 GeneDB CDS 1553448 1554195 . - . mRNA SPCC162.12 ; colour "2" ;
chromosome3 GeneDB misc_feature 1553093 1554722 . + . misc_feature unknown_1200 ; note "nominal overlap with cosmid SPCC162 and cosmid SPCC1753" ;
chromosome3 GeneDB misc_feature 1553389 1553403 . - . misc_feature unknown_1201 ; colour "6" ; note "ttaacttacttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1553442 1553447 . - . misc_feature unknown_1202 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1554194 1554475 . - . mRNA SPCC162.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.12" ; systematic_id "SPCC162.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1555182 1556444 . + . mRNA SPCC162.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.11c" ; systematic_id "SPCC162.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1556445 1557809 . + . mRNA SPCC162.11c ; db_xref "SPD:21/21B07" ; systematic_id "SPCC162.11c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=catalytic activity, bifunctional enzyme; cv=cat_act; date=20090619" ; GO "GO:0004849; uridine kinase activity
GO:0008655; pyrimidine salvage
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004845; uracil phosphoribosyltransferase activity" ; gene "SPCC162.11c" ; product "uridine kinase/uracil phosphoribosyltransferase (predicted)" ; EC_number "2.7.1.48 ||| 2.4.2.9" ;
chromosome3 GeneDB CDS 1556445 1557809 . + . mRNA SPCC162.11c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1557810 1557913 . + . mRNA SPCC162.11c ; ID "SPCC162.11c" ; systematic_id "SPCC162.11c" ; note "mRNA from AU013303" ;
chromosome3 GeneDB CDS_parts 1558224 1559240 . - . mRNA SPCC162.10 ; systematic_id "SPCC162.10" ; colour "2" ; gene "ppk33 ||| SPCC162.10" ; Alias "ppk33" ; db_xref "SPD:15/15B09" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk33" ; product "serine/threonine protein kinase Ppk33 (predicted)" ;
chromosome3 GeneDB CDS 1558224 1559240 . - . mRNA SPCC162.10 ; colour "2" ;
chromosome3 GeneDB misc_RNA 1560068 1561109 . + . misc_RNA SPNCRNA.495 ; db_xref "PMID:18488015" ; synonym "SPNG2446" ; systematic_id "SPNCRNA.495" ; controlled_curation "term=; qualifier=dubious; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 1561240 1561985 . + . mRNA SPCC162.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.09c" ; systematic_id "SPCC162.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1561986 1565147 . + . mRNA SPCC162.09c ; systematic_id "SPCC162.09c" ; colour "2" ; db_xref "SPD:30/30B08" ; Alias "hmg1" ; synonym "its12" ; GO "GO:0004420; hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0004420; hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0006696; ergosterol biosynthetic process
GO:0005789; endoplasmic reticulum membrane
GO:0031965; nuclear membrane
GO:0010142; farnesyl diphosphate biosynthesis, mevalonate pathway
GO:0005515; protein binding
GO:0031505; fungal-type call wall organization
GO:0042175; nuclear envelope-endoplasmic reticulum network" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8896278; date=20091127 ||| term=phenotype, increased HMG-CoA reductase activity; db_xref=PMID:19041767; cv=phenotype; residue=F358A/F359A; qualifier=ts; date=20090206 ||| term=phenotype, resistance to lavostatin; cv=phenotype; db_xref=PMID:8896278; date=20091127 ||| term=phenotype, sensitive to pravastatin; qualifier=ts; residue=234W->opal; allele=hmg1- 1; db_xref=PMID:19486165; date=20091127 ||| term=phenotype, septation defects; qualifier=ts; residue=234W->opal; allele=hmg1-1; db_xref=PMID:19486165; date=20091127 ||| term=phenotype, cell wall defects; qualifier=ts; residue=234W->opal; allele=hmg1-1; db_xref=PMID:19486165; cv=phenotype; date=20091127 ||| term=phenotype, cell morphology, misshapen cells; qualifier=ts; residue=234W->opal; allele=hmg1-1; db_xref=PMID:19486165; cv=phenotype; date=20091127 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML075C and YLR450W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, hyperchlesterolemia; date=20091127 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19041767; residue=S1024|T1028; qualifier=during_nutrient_limitation; cv=pt_mod; date=20090206 ||| term=name description, Immunosuppressant and Temperature Sensitive; db_xref=PMID:19486165; date=20091127" ; primary_name "hmg1" ; product "3-hydroxy-3-methylglutaryl-CoA reductase Hmg1" ; EC_number "1.1.1.34" ;
chromosome3 GeneDB CDS 1561986 1565147 . + . mRNA SPCC162.09c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1565148 1565422 . + . mRNA SPCC162.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.09c" ; systematic_id "SPCC162.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1565587 1565641 . + . mRNA SPCC162.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.08c" ; systematic_id "SPCC162.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1565642 1571155 . + . mRNA SPCC162.08c ; systematic_id "SPCC162.08c" ; colour "2" ; gene "nup211 ||| SPCC162.08c" ; Alias "nup211" ; db_xref "SPD:31/31B06" ; GO "GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0043021; ribonucleoprotein binding
GO:0051301; cell division
GO:0006606; protein import into nucleus
GO:0006406; mRNA export from nucleus
GO:0034399; nuclear periphery
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; cv=phenotype; db_xref=PMID:19557351; date=20090628 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YKR095W and YIL149C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human TPR ortholog; date=20100217 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nup211" ; product "nucleoporin nup211" ;
chromosome3 GeneDB CDS 1565642 1571155 . + . mRNA SPCC162.08c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1571156 1571195 . + . mRNA SPCC162.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.08c" ; systematic_id "SPCC162.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1571465 1571647 . - . mRNA SPCC162.07 ; ID "SPCC162.07" ; systematic_id "SPCC162.07" ; note "mRNA from AU006593" ;
chromosome3 GeneDB CDS_parts 1571648 1574050 . - . mRNA SPCC162.07 ; systematic_id "SPCC162.07" ; colour "2" ; gene "SPCC162.07 ||| ent1" ; Alias "ent1" ; db_xref "SPD:46/46H04" ; GO "GO:0030479; actin cortical patch
GO:0006897; endocytosis
GO:0000147; actin cortical patch assembly
GO:0030276; clathrin binding
GO:0043130; ubiquitin binding
GO:0005546; phosphatidylinositol-4,5-bisphosphate binding
GO:0007015; actin filament organization
GO:0005096; GTPase activator activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15659877; date=19700101 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL161W and YLR206W and YLL038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ent1" ; product "epsin" ;
chromosome3 GeneDB CDS 1571648 1573733 . - . mRNA SPCC162.07 ; colour "2" ;
chromosome3 GeneDB CDS 1574016 1574050 . - . mRNA SPCC162.07 ; colour "2" ;
chromosome3 GeneDB misc_feature 1573734 1573746 . - . misc_feature unknown_1203 ; colour "6" ; note "ctaacattcgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1574010 1574015 . - . misc_feature unknown_1204 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1574049 1574440 . - . mRNA SPCC162.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.07" ; systematic_id "SPCC162.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 1574724 1575071 . + . LTR unknown_1205 ; note "Tf2 type LTR" ;
chromosome3 GeneDB conflict 1575952 1575974 . - . conflict unknown_1206 ; colour "4" ; citation "[1]" ; note "conflict with overlap in cosmid c13B11. Amiguity wr t number of As, c13B11has either 21 or 24. SPCC162 has 23" ;
chromosome3 GeneDB 5'-UTR 1577080 1577139 . + . mRNA SPCC162.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.06c" ; systematic_id "SPCC162.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1577140 1577886 . + . mRNA SPCC162.06c ; db_xref "SPD:09/09B04" ; systematic_id "SPCC162.06c" ; colour "7" ; GO "GO:0000329; vacuolar membrane (sensu Fungi)
GO:0032511; late endosome to vacuole transport vi multivesicular body sorting pathway
GO:0043162; ubiquitin-dependent protein catabolism via the multivesicular body pathway
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR486C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CHMP5 ortholog; date=20100802" ; gene "SPCC162.06c" ; product "vacuolar sorting protein Vps60 (predicted)" ;
chromosome3 GeneDB CDS 1577140 1577208 . + . mRNA SPCC162.06c ; colour "7" ;
chromosome3 GeneDB CDS 1577266 1577417 . + . mRNA SPCC162.06c ; colour "7" ;
chromosome3 GeneDB CDS 1577475 1577886 . + . mRNA SPCC162.06c ; colour "7" ;
chromosome3 GeneDB misc_feature 1577209 1577214 . + . misc_feature unknown_1207 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1577247 1577265 . + . misc_feature unknown_1208 ; colour "6" ; note "ctaatatcttttattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1577418 1577423 . + . misc_feature unknown_1209 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1577457 1577474 . + . misc_feature unknown_1210 ; colour "6" ; note "ctaacgacagcaatatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1577887 1577960 . + . mRNA SPCC162.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.06c" ; systematic_id "SPCC162.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1578125 1578219 . - . mRNA SPCC162.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.05" ; systematic_id "SPCC162.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1578220 1579035 . - . mRNA SPCC162.05 ; systematic_id "SPCC162.05" ; colour "2" ; gene "coq3 ||| SPCC162.05" ; Alias "coq3" ; db_xref "SPD:43/43D01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL096C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0004395; hexaprenyldihydroxybenzoate methyltransferase activity
GO:0006744; ubiquinone biosynthesis" ; primary_name "coq3" ; product "hexaprenyldihydroxybenzoate methyltransferase Coq3" ; EC_number "2.1.1.114" ;
chromosome3 GeneDB CDS 1578220 1579035 . - . mRNA SPCC162.05 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1579034 1579062 . - . mRNA SPCC162.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.05" ; systematic_id "SPCC162.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 1579176 1579526 . - . LTR unknown_1211 ; note "tf1 type LTR" ;
chromosome3 GeneDB repeat_region 1579527 1581981 . - . repeat_region wtf13 ; systematic_id "wtf13" ; note "wtf element" ;
chromosome3 GeneDB CDS_parts 1580123 1581694 . - . mRNA SPCC162.04c ; systematic_id "SPCC162.04c" ; colour "12" ; gene "wtf13 ||| SPCC162.04c" ; obsolete_name "wtf12" ; Alias "wtf13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf13" ; product "wtf element Wtf13" ;
chromosome3 GeneDB CDS 1580123 1580613 . - . mRNA SPCC162.04c ; colour "12" ;
chromosome3 GeneDB CDS 1580650 1581006 . - . mRNA SPCC162.04c ; colour "12" ;
chromosome3 GeneDB CDS 1581055 1581327 . - . mRNA SPCC162.04c ; colour "12" ;
chromosome3 GeneDB CDS 1581559 1581694 . - . mRNA SPCC162.04c ; colour "12" ;
chromosome3 GeneDB misc_feature 1580614 1580624 . - . misc_feature unknown_1212 ; colour "6" ; note "ctaacatacag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1580614 1580649 . - . intron SPCC162.04c ; systematic_id "SPCC162.04c" ; note "intron confirmed by EST" ;
chromosome3 GeneDB misc_feature 1580644 1580649 . - . misc_feature unknown_1213 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1581328 1581340 . - . misc_feature unknown_1214 ; colour "6" ; note "ttaatgctttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1581553 1581558 . - . misc_feature unknown_1215 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB LTR 1581982 1582318 . - . LTR unknown_1216 ; note "tf2 type LTR" ;
chromosome3 GeneDB CDS_parts 1582904 1583782 . - . mRNA SPCC162.03 ; db_xref "SPD:11/11H08" ; systematic_id "SPCC162.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC162.03" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB CDS 1582904 1583782 . - . mRNA SPCC162.03 ; colour "10" ;
chromosome3 GeneDB CDS_parts 1584480 1587425 . + . mRNA SPCC162.02c ; db_xref "SPD:29/29G05" ; systematic_id "SPCC162.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081113" ; colour "10" ; gene "SPCC162.02c" ; product "AMP-binding dehydrogenase (predicted)" ;
chromosome3 GeneDB CDS 1584480 1587425 . + . mRNA SPCC162.02c ; colour "10" ;
chromosome3 GeneDB 3'-UTR 1587426 1587560 . + . mRNA SPCC162.02c ; ID "SPCC162.02c" ; systematic_id "SPCC162.02c" ; note "mRNA from SPD124" ;
chromosome3 GeneDB 5'-UTR 1587696 1587868 . + . mRNA SPCC162.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC162.01c" ; systematic_id "SPCC162.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 1587755 1588838 . - . misc_RNA SPNCRNA.582 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.582" ; synonym "SPNG2AF60" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB CDS_parts 1587869 1588603 . + . mRNA SPCC162.01c ; db_xref "SPD:08/08H08" ; systematic_id "SPCC162.01c" ; colour "7" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human RY-1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC162.01c" ; product "U4/U6 x U5 tri-snRNP complex subunit (predicted)" ;
chromosome3 GeneDB CDS 1587869 1588603 . + . mRNA SPCC162.01c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1588604 1588649 . + . mRNA SPCC162.01c ; ID "SPCC162.01c" ; systematic_id "SPCC162.01c" ; note "mRNA from AU014221" ;
chromosome3 GeneDB misc_feature 1588816 1590896 . + . misc_feature unknown_1217 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low complexity region; date=20071120" ; note "warning, this transcript could be on either strand ||| SPNG2452-56" ;
chromosome3 GeneDB misc_feature 1588848 1591052 . - . misc_feature unknown_1218 ; note "nominal overlap between cosmid SPCC13B11 and SPCC162 S. pombe chromosome 3" ;
chromosome3 GeneDB 5'-UTR 1591327 1591358 . + . mRNA SPCC13B11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC13B11.01" ; systematic_id "SPCC13B11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1591359 1592411 . + . mRNA SPCC13B11.01 ; systematic_id "SPCC13B11.01" ; colour "2" ; gene "SPCC13B11.01" ; Alias "adh1" ; db_xref "SPD:16/16B03" ; synonym "adh" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR145W and YMR083W and YMR303C and YOL086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006116; NADH oxidation
GO:0000947; amino acid catabolic process to alcohol via Ehrlich pathway
GO:0043458; ethanol biosynthetic process during fermentation
GO:0004022; alcohol dehydrogenase (NAD) activity" ; primary_name "adh1" ; product "alcohol dehydrogenase Adh1" ; EC_number "1.1.1.1" ;
chromosome3 GeneDB CDS 1591359 1592411 . + . mRNA SPCC13B11.01 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1592412 1592889 . + . mRNA SPCC13B11.01 ; ID "SPCC13B11.01" ; systematic_id "SPCC13B11.01" ; note "mRNA from AU012388" ;
chromosome3 GeneDB CDS_parts 1593402 1593818 . - . mRNA SPCC13B11.02c ; db_xref "SPD:51/51H07" ; systematic_id "SPCC13B11.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPCC13B11.02c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1593402 1593818 . - . mRNA SPCC13B11.02c ; colour "8" ;
chromosome3 GeneDB CDS_parts 1595042 1596061 . - . mRNA SPCC13B11.03c ; db_xref "SPD:15/15C05" ; systematic_id "SPCC13B11.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR272W and YOR040W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004416; hydroxyacylglutathione hydrolase activity
GO:0019243; methylglyoxal catabolism to D-lactate
GO:0051595; response to methylglyoxal
GO:0044262; cellular carbohydrate metabolic process" ; gene "SPCC13B11.03c" ; product "hydroxyacylglutathione hydrolase (predicted)" ; EC_number "3.1.2.6" ;
chromosome3 GeneDB CDS 1595042 1595287 . - . mRNA SPCC13B11.03c ; colour "7" ;
chromosome3 GeneDB CDS 1595353 1595758 . - . mRNA SPCC13B11.03c ; colour "7" ;
chromosome3 GeneDB CDS 1595943 1596061 . - . mRNA SPCC13B11.03c ; colour "7" ;
chromosome3 GeneDB misc_feature 1595288 1595303 . - . misc_feature unknown_1219 ; colour "6" ; note "ctaacaagtttcctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1595347 1595352 . - . misc_feature unknown_1220 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1595759 1595773 . - . misc_feature unknown_1221 ; colour "6" ; note "ctgacaaagctccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1595937 1595942 . - . misc_feature unknown_1222 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 1597415 1598596 . - . mRNA SPCC13B11.04c ; systematic_id "SPCC13B11.04c" ; colour "7" ; gene "SPCC13B11.04c ||| SPCC777.01c" ; db_xref "SPD:18/18G06" ; synonym "SPCC777.01c" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0051903; S-(hydroxymethyl)glutathione dehydrogenase activity
GO:0046294; formaldehyde catabolism
GO:0000947; amino acid catabolic process to alcohol via Ehrlich pathway
GO:0004022; alcohol dehydrogenase activity
GO:0033833; hydroxymethylfurfural reductase (NADH) activity
GO:0033859; furaldehyde metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "glutathione-dependent formaldehyde dehydrogenase (predicted)" ; EC_number "1.1.1.284" ;
chromosome3 GeneDB CDS 1597415 1598530 . - . mRNA SPCC13B11.04c ; colour "7" ;
chromosome3 GeneDB CDS 1598570 1598596 . - . mRNA SPCC13B11.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 1598374 1598846 . + . misc_feature unknown_1223 ; note "nominal overlap with cosmid SPCC777 and cosmid SPCC13B11" ;
chromosome3 GeneDB misc_feature 1598531 1598543 . - . misc_feature unknown_1224 ; colour "6" ; note "cttattaaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1598564 1598569 . - . misc_feature unknown_1225 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 1598981 1601173 . + . mRNA SPCC777.02 ; systematic_id "SPCC777.02" ; colour "7" ; gene "SPCC777.02" ; note "09.07.02 added N-terminal exon to extend homology. perhaps pseudo ||| 28.10.03 replaced N terminal exon with 2 better exons, still not sure its correct but it looks better than before" ; db_xref "SPD:34/34H10" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR337W and YLR098C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB CDS 1598981 1599054 . + . mRNA SPCC777.02 ; colour "7" ;
chromosome3 GeneDB CDS 1599267 1599291 . + . mRNA SPCC777.02 ; colour "7" ;
chromosome3 GeneDB CDS 1599374 1601173 . + . mRNA SPCC777.02 ; colour "7" ;
chromosome3 GeneDB CDS_parts 1601512 1602702 . - . mRNA SPCC777.03c ; db_xref "SPD:44/44A03" ; systematic_id "SPCC777.03c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC11D3.10; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=warning, possible horizontal transfer; date=20100827" ; gene "SPCC777.03c" ; product "nifs homolog, possible cysteine desulfurase" ; note "region appears to be a duplication of a region of chromosome I cosmid c11D3, region encompasses SPCC777.02 & SPC777.03" ;
chromosome3 GeneDB CDS 1601512 1602702 . - . mRNA SPCC777.03c ; colour "10" ;
chromosome3 GeneDB CDS_parts 1602954 1604519 . + . mRNA SPCC777.04 ; db_xref "SPD:45/45B04" ; systematic_id "SPCC777.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPCC777.04" ; product "amino acid transporter (predicted)" ;
chromosome3 GeneDB CDS 1602954 1604519 . + . mRNA SPCC777.04 ; colour "7" ;
chromosome3 GeneDB CDS_parts 1605132 1606157 . + . mRNA SPCC777.05 ; systematic_id "SPCC777.05" ; colour "7" ; gene "gtr2 ||| SPCC777.05" ; Alias "gtr2" ; db_xref "SPD:15/15E02" ; GO "GO:0007264; small GTPase mediated signal transduction
GO:0005525; GTP binding
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR163W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gtr2" ; product "Gtr1/RagA G protein Gtr2 (predicted)" ;
chromosome3 GeneDB CDS 1605132 1605271 . + . mRNA SPCC777.05 ; colour "7" ;
chromosome3 GeneDB CDS 1605353 1606157 . + . mRNA SPCC777.05 ; colour "7" ;
chromosome3 GeneDB misc_feature 1605272 1605277 . + . misc_feature unknown_1226 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1605331 1605352 . + . misc_feature unknown_1227 ; colour "6" ; note "ctaataatttgtttgtatatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1606158 1606286 . + . mRNA SPCC777.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.05" ; systematic_id "SPCC777.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1606450 1606664 . - . mRNA SPCC777.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.06c" ; systematic_id "SPCC777.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1606665 1607732 . - . mRNA SPCC777.06c ; db_xref "SPD:16/16D09" ; systematic_id "SPCC777.06c" ; colour "10" ; GO "GO:0016787; hydrolase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC777.06c" ; product "hydrolase (predicted)" ;
chromosome3 GeneDB CDS 1606665 1607233 . - . mRNA SPCC777.06c ; colour "10" ;
chromosome3 GeneDB CDS 1607396 1607732 . - . mRNA SPCC777.06c ; colour "10" ;
chromosome3 GeneDB misc_feature 1607234 1607255 . - . misc_feature unknown_1228 ; colour "6" ; note "ctaaccgtttgttgcattgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1607390 1607395 . - . misc_feature unknown_1229 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1607731 1607825 . - . mRNA SPCC777.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.06c" ; systematic_id "SPCC777.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1609353 1609507 . + . mRNA SPCC777.07 ; ID "SPCC777.07" ; db_xref "PMID:18488015" ; systematic_id "SPCC777.07" ; note "UTR predicted from transcriptome data SPNG2461" ;
chromosome3 GeneDB CDS_parts 1609810 1611026 . + . mRNA SPCC777.07 ; systematic_id "SPCC777.07" ; colour "7" ; gene "SPCC777.07" ; Alias "omh3" ; db_xref "SPD:19/19D02" ; GO "GO:0000026; alpha-1,2-mannosyltransferase activity
GO:0000032; cell wall mannoprotein biosynthesis
GO:0035269; protein amino acid O-linked mannosylation
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR099W and YKR061W and YJL139C and YDR483W and YBR205W and YBR199W and YPL053C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100525" ; primary_name "omh3" ; product "alpha-1,2-mannosyltransferase Omh3 (predicted)" ; EC_number "2.4.1.-" ;
chromosome3 GeneDB CDS 1609810 1610414 . + . mRNA SPCC777.07 ; colour "7" ;
chromosome3 GeneDB CDS 1610495 1611026 . + . mRNA SPCC777.07 ; colour "7" ;
chromosome3 GeneDB misc_feature 1610415 1610420 . + . misc_feature unknown_1230 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1610478 1610494 . + . misc_feature unknown_1231 ; colour "6" ; note "ctaaccaattctttaag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1611027 1611126 . + . mRNA SPCC777.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.07" ; systematic_id "SPCC777.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1611127 1611295 . - . mRNA SPCC777.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.08c" ; systematic_id "SPCC777.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1611296 1612564 . - . mRNA SPCC777.08c ; systematic_id "SPCC777.08c" ; colour "2" ; gene "bit61 ||| SPCC777.08c" ; db_xref "SPD:20/20C11" ; Alias "bit61" ; GO "GO:0031929; TOR signaling pathway
GO:0031932; TORC 2 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR270C and YJL058C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Vertebrates; date=20091107 ||| term=species distribution, conserved in Metazoa; date=20091107 ||| term=species distribution, conserved in Eukaryotes only; date=20091107" ; primary_name "bit61" ; product "TORC2 subunit Bit61" ;
chromosome3 GeneDB CDS 1611296 1612564 . - . mRNA SPCC777.08c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1612563 1612667 . - . mRNA SPCC777.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.08c" ; systematic_id "SPCC777.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1613047 1613323 . - . mRNA SPCC777.09c ; Alias "arg1" ; ID "SPCC777.09c" ; db_xref "EMBL:D89114" ; systematic_id "SPCC777.09c" ; primary_name "arg1" ;
chromosome3 GeneDB CDS_parts 1613324 1614897 . - . mRNA SPCC777.09c ; systematic_id "SPCC777.09c" ; colour "2" ; gene "arg1 ||| SPCC777.09c" ; Alias "arg1" ; db_xref "KEGG:MAP00220; ||| SPD:45/45B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for arginine; db_xref=PMID:17622533; date=20100812 ||| term=orthologous to S. cerevisiae YOL140W; date=19700101 ||| term=experimental tools, selectable marker, amino acid auxotroph; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0006592; ornithine biosynthesis
GO:0042450; arginine biosynthesis via ornithine
GO:0006538; glutamate catabolism
GO:0003992; acetylornithine transaminase activity
GO:0005759; mitochondrial matrix" ; primary_name "arg1" ; product "acetylornithine aminotransferase" ; EC_number "2.6.1.11" ;
chromosome3 GeneDB CDS 1613324 1614577 . - . mRNA SPCC777.09c ; colour "2" ;
chromosome3 GeneDB CDS 1614826 1614897 . - . mRNA SPCC777.09c ; colour "2" ;
chromosome3 GeneDB misc_feature 1614578 1614591 . - . misc_feature unknown_1232 ; colour "6" ; note "ttaaccaagtttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1614578 1614825 . - . intron SPCC777.09c ; Alias "arg1" ; db_xref "EMBL:D89114" ; systematic_id "SPCC777.09c" ; primary_name "arg1" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1614820 1614825 . - . misc_feature unknown_1233 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1614898 1614950 . - . mRNA SPCC777.09c ; Alias "arg1" ; ID "SPCC777.09c" ; db_xref "EMBL:D89114" ; systematic_id "SPCC777.09c" ; primary_name "arg1" ;
chromosome3 GeneDB CDS_parts 1615079 1616118 . - . mRNA SPCC777.10c ; systematic_id "SPCC777.10c" ; colour "2" ; gene "ubc12 ||| SPCC777.10c" ; Alias "ubc12" ; db_xref "SPD:15/15G05" ; GO "GO:0045116; protein neddylation
GO:0019787; small conjugating protein ligase activity
GO:0019788; NEDD8 ligase activity
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10880460; date=20100708 ||| term=orthologous to S. cerevisiae YLR306W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ubc12" ; product "NEDD8-conjugating enzyme Ubc12" ;
chromosome3 GeneDB CDS 1615079 1615188 . - . mRNA SPCC777.10c ; colour "2" ;
chromosome3 GeneDB CDS 1615436 1615583 . - . mRNA SPCC777.10c ; colour "2" ;
chromosome3 GeneDB CDS 1615695 1615783 . - . mRNA SPCC777.10c ; colour "2" ;
chromosome3 GeneDB CDS 1615866 1615961 . - . mRNA SPCC777.10c ; colour "2" ;
chromosome3 GeneDB CDS 1616028 1616118 . - . mRNA SPCC777.10c ; colour "2" ;
chromosome3 GeneDB misc_feature 1615189 1615209 . - . misc_feature unknown_1234 ; colour "6" ; note "ctaacaaacgatatcttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1615430 1615435 . - . misc_feature unknown_1235 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1615584 1615598 . - . misc_feature unknown_1236 ; colour "6" ; note "ctgacctactgttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1615689 1615694 . - . misc_feature unknown_1237 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1615784 1615796 . - . misc_feature unknown_1238 ; colour "6" ; note "ttaacatgaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1615860 1615865 . - . misc_feature unknown_1239 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1615962 1615984 . - . misc_feature unknown_1240 ; colour "6" ; note "ctaaccattttcgatgaatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1616022 1616027 . - . misc_feature unknown_1241 ; colour "6" ; note "gtgcga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1616117 1616133 . - . mRNA SPCC777.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.10c" ; systematic_id "SPCC777.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1616463 1616662 . + . mRNA SPCC777.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.11" ; systematic_id "SPCC777.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1616663 1617049 . + . mRNA SPCC777.11 ; db_xref "SPD:34/34D10" ; systematic_id "SPCC777.11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC777.11" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1616663 1617049 . + . mRNA SPCC777.11 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 1617050 1617232 . + . mRNA SPCC777.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.11" ; systematic_id "SPCC777.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1617210 1618046 . - . mRNA SPCC777.12c ; db_xref "SPD:10/10H11" ; systematic_id "SPCC777.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=thioredoxin family; date=20081111" ; colour "10" ; gene "SPCC777.12c" ; product "thioredoxin family protein" ;
chromosome3 GeneDB CDS 1617210 1617647 . - . mRNA SPCC777.12c ; colour "10" ;
chromosome3 GeneDB CDS 1617768 1618046 . - . mRNA SPCC777.12c ; colour "10" ;
chromosome3 GeneDB misc_feature 1617648 1617661 . - . misc_feature unknown_1242 ; colour "6" ; note "ctaactaattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1617762 1617767 . - . misc_feature unknown_1243 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1618045 1618110 . - . mRNA SPCC777.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.12c" ; systematic_id "SPCC777.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1618441 1618573 . - . mRNA SPCC777.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.17c" ; systematic_id "SPCC777.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1618574 1619058 . - . mRNA SPCC777.17c ; db_xref "SPD:04/04E04" ; systematic_id "SPCC777.17c" ; colour "7" ; GO "GO:0005762; mitochondrial ribosome large subunit
GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC777.17c" ; product "mitochondrial ribosomal protein subunit L9 (predicted)" ;
chromosome3 GeneDB CDS 1618574 1618713 . - . mRNA SPCC777.17c ; colour "7" ;
chromosome3 GeneDB CDS 1618844 1618919 . - . mRNA SPCC777.17c ; colour "7" ;
chromosome3 GeneDB CDS 1618969 1619058 . - . mRNA SPCC777.17c ; colour "7" ;
chromosome3 GeneDB misc_feature 1618714 1618728 . - . misc_feature unknown_1244 ; colour "6" ; note "ctaactttacaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1618838 1618843 . - . misc_feature unknown_1245 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1618920 1618936 . - . misc_feature unknown_1246 ; colour "6" ; note "cttacacagttatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1618963 1618968 . - . misc_feature unknown_1247 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1619057 1619268 . - . mRNA SPCC777.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.17c" ; systematic_id "SPCC777.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1619525 1619708 . + . mRNA SPCC777.13 ; ID "SPCC777.13" ; systematic_id "SPCC777.13" ; note "mRNA from AU013533" ;
chromosome3 GeneDB CDS_parts 1619709 1622337 . + . mRNA SPCC777.13 ; systematic_id "SPCC777.13" ; colour "2" ; gene "vps35 ||| SPCC777.13" ; Alias "vps35" ; db_xref "SPD:47/47A03" ; GO "GO:0005768; endosome
GO:0030904; retromer complex
GO:0030904; retromer complex
GO:0006886; intracellular protein transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL154C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "vps35" ; product "retromer complex subunit Vps35" ;
chromosome3 GeneDB CDS 1619709 1621163 . + . mRNA SPCC777.13 ; colour "2" ;
chromosome3 GeneDB CDS 1621204 1621317 . + . mRNA SPCC777.13 ; colour "2" ;
chromosome3 GeneDB CDS 1621361 1621710 . + . mRNA SPCC777.13 ; colour "2" ;
chromosome3 GeneDB CDS 1621765 1621822 . + . mRNA SPCC777.13 ; colour "2" ;
chromosome3 GeneDB CDS 1621870 1621944 . + . mRNA SPCC777.13 ; colour "2" ;
chromosome3 GeneDB CDS 1622032 1622337 . + . mRNA SPCC777.13 ; colour "2" ;
chromosome3 GeneDB misc_feature 1621164 1621169 . + . misc_feature unknown_1248 ; colour "6" ; note "gtacta, splice donor sequence" ;
chromosome3 GeneDB intron 1621164 1621203 . + . intron SPCC777.13 ; systematic_id "SPCC777.13" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1621192 1621203 . + . misc_feature unknown_1249 ; colour "6" ; note "ctgacaacttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1621318 1621323 . + . misc_feature unknown_1250 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome3 GeneDB intron 1621318 1621360 . + . intron SPCC777.13 ; systematic_id "SPCC777.13" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1621345 1621360 . + . misc_feature unknown_1251 ; colour "6" ; note "ctaacaatacatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1621711 1621716 . + . misc_feature unknown_1252 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB intron 1621711 1621764 . + . intron SPCC777.13 ; systematic_id "SPCC777.13" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1621748 1621764 . + . misc_feature unknown_1253 ; colour "6" ; note "ctaattttttactttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1621823 1621828 . + . misc_feature unknown_1254 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB intron 1621823 1621869 . + . intron SPCC777.13 ; systematic_id "SPCC777.13" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1621855 1621869 . + . misc_feature unknown_1255 ; colour "6" ; note "ctaacattcctatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1621945 1621950 . + . misc_feature unknown_1256 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB intron 1621945 1622031 . + . intron SPCC777.13 ; systematic_id "SPCC777.13" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1622017 1622031 . + . misc_feature unknown_1257 ; colour "6" ; note "ttaacttttttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1622338 1622409 . + . mRNA SPCC777.13 ; ID "SPCC777.13" ; systematic_id "SPCC777.13" ; note "mRNA from spc06887" ;
chromosome3 GeneDB 5'-UTR 1622512 1622736 . + . mRNA SPCC777.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.14" ; systematic_id "SPCC777.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1622737 1624278 . + . mRNA SPCC777.14 ; systematic_id "SPCC777.14" ; colour "2" ; gene "prp4 ||| SPCC777.14" ; Alias "prp4" ; db_xref "SPD:25/25A06" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8371982; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:9102632; date=20100712 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "prp4" ; product "serine/threonine protein kinase Prp4" ;
chromosome3 GeneDB CDS 1622737 1623730 . + . mRNA SPCC777.14 ; colour "2" ;
chromosome3 GeneDB CDS 1623839 1624278 . + . mRNA SPCC777.14 ; colour "2" ;
chromosome3 GeneDB misc_feature 1623731 1623736 . + . misc_feature unknown_1258 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1623823 1623838 . + . misc_feature unknown_1259 ; colour "6" ; note "ctaacctttaaaatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1624279 1624327 . + . mRNA SPCC777.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.14" ; systematic_id "SPCC777.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1624658 1624701 . + . mRNA SPCC777.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC777.15" ; systematic_id "SPCC777.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1624702 1625682 . + . mRNA SPCC777.15 ; db_xref "SPD:14/14B08" ; systematic_id "SPCC777.15" ; colour "7" ; GO "GO:0017150; tRNA dihydrouridine synthase activity
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR405W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC777.15" ; product "tRNA dihydrouridine synthase Dus4 (predicted)" ;
chromosome3 GeneDB CDS 1624702 1625682 . + . mRNA SPCC777.15 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1626088 1626546 . - . mRNA SPCC663.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.01c" ; systematic_id "SPCC663.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1626547 1629120 . - . mRNA SPCC663.01c ; systematic_id "SPCC663.01c" ; colour "2" ; gene "ekc1 ||| SPCC777.16c ||| SPCC663.01c" ; Alias "ekc1" ; obsolete_name "eck1" ; db_xref "SPD:38/38D12" ; synonym "SPCC777.16c" ; GO "GO:0051983; regulation of chromosome segregation
GO:0005515; protein binding
GO:0005721; centric heterochromatin" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR040W and YGL229C and YKR028W and YJL098W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Extragenic suppressor of KinetoChore; cv=name_description; db_xref=PMID:12773390; date=20090427 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ekc1" ; product "protein phosphatase regulatory subunit Ekc1 (predicted)" ;
chromosome3 GeneDB CDS 1626547 1626561 . - . mRNA SPCC663.01c ; colour "2" ;
chromosome3 GeneDB CDS 1626619 1629120 . - . mRNA SPCC663.01c ; colour "2" ;
chromosome3 GeneDB misc_feature 1626562 1626575 . - . misc_feature unknown_1260 ; colour "6" ; note "ctaacagcatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1626613 1626618 . - . misc_feature unknown_1261 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1627527 1627628 . + . misc_feature unknown_1262 ; note "nominal overlap with cosmid SPCC777 and cosmid SPCC663" ;
chromosome3 GeneDB 5'-UTR 1629119 1629385 . - . mRNA SPCC663.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.01c" ; systematic_id "SPCC663.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 1629525 1629874 . - . LTR unknown_1263 ; note "Tf2-type degraded LTR" ;
chromosome3 GeneDB 5'-UTR 1630267 1630437 . + . mRNA SPCC663.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.02" ; systematic_id "SPCC663.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1630438 1631226 . + . mRNA SPCC663.02 ; systematic_id "SPCC663.02" ; colour "12" ; gene "wtf14 ||| SPCC663.02" ; db_xref "SPD:09/09H12" ; Alias "wtf14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223 ||| term=warning, appears to be truncated; cv=warning; date=20090613" ; primary_name "wtf14" ; product "wtf element Wtf14" ;
chromosome3 GeneDB CDS 1630438 1630567 . + . mRNA SPCC663.02 ; colour "12" ;
chromosome3 GeneDB CDS 1630639 1630863 . + . mRNA SPCC663.02 ; colour "12" ;
chromosome3 GeneDB CDS 1630913 1631226 . + . mRNA SPCC663.02 ; colour "12" ;
chromosome3 GeneDB misc_feature 1630568 1630573 . + . misc_feature unknown_1264 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1630627 1630638 . + . misc_feature unknown_1265 ; colour "6" ; note "ttaacgtaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1630864 1630869 . + . misc_feature unknown_1266 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1630901 1630912 . + . misc_feature unknown_1267 ; colour "6" ; note "ctaattctatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1631227 1632161 . + . mRNA SPCC663.02 ; ID "SPCC663.02" ; db_xref "PMID:18488015" ; systematic_id "SPCC663.02" ; note "UTR for wtf from SPNG2463" ;
chromosome3 GeneDB LTR 1632188 1632545 . - . LTR unknown_1268 ; colour "4" ; note "Lone Tf1 type LTR" ;
chromosome3 GeneDB CDS_parts 1632825 1633709 . + . mRNA SPCC663.17 ; Alias "wtf15" ; systematic_id "SPCC663.17" ; pseudo "_no_value" ; colour "13" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; gene "wtf15 ||| SPCC663.17" ; primary_name "wtf15" ; product "pseudogene wtf element Wtf15" ;
chromosome3 GeneDB CDS 1632825 1633709 . + . mRNA SPCC663.17 ; colour "13" ;
chromosome3 GeneDB 3'-UTR 1633710 1634461 . + . mRNA SPCC663.17 ; ID "SPCC663.17" ; db_xref "PMID:18488015" ; systematic_id "SPCC663.17" ; note "UTR for wtf from SPNG2464" ;
chromosome3 GeneDB 5'-UTR 1635107 1635973 . + . mRNA SPCC663.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.03" ; systematic_id "SPCC663.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1635974 1640062 . + . mRNA SPCC663.03 ; systematic_id "SPCC663.03" ; colour "2" ; gene "pmd1 ||| SPCC663.03" ; Alias "pmd1" ; db_xref "SPD:30/30F04" ; GO "GO:0005886; plasma membrane
GO:0042626; ATPase activity, coupled to transmembrane movement of substances
GO:0005524; ATP binding
GO:0006855; multidrug transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797|PMID:9037770; date=20070216 ||| term=orthologous to S. cerevisiae YKL209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "pmd1" ; product "leptomycin efflux transporter Pmd1" ;
chromosome3 GeneDB CDS 1635974 1640062 . + . mRNA SPCC663.03 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1640063 1640498 . + . mRNA SPCC663.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.03" ; systematic_id "SPCC663.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1641021 1641176 . + . mRNA SPCC663.04 ; systematic_id "SPCC663.04" ; colour "2" ; gene "rpl39 ||| SPCC663.04" ; Alias "rpl39" ; db_xref "SPD:01/01A05" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL189W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl39" ; product "60S ribosomal protein L39" ;
chromosome3 GeneDB CDS 1641021 1641176 . + . mRNA SPCC663.04 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1641177 1641180 . + . mRNA SPCC663.04 ; ID "SPCC663.04" ; systematic_id "SPCC663.04" ; note "mRNA from AU006903" ;
chromosome3 GeneDB intron 1641181 1641242 . + . intron unknown_1269 ; note "confirmed, in 3' UTR" ;
chromosome3 GeneDB misc_RNA 1641873 1642741 . - . misc_RNA SPNCRNA.548 ; db_xref "PMID:18488015" ; synonym "SPNGAF72" ; systematic_id "SPNCRNA.548" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ;
chromosome3 GeneDB misc_feature 1642576 1642953 . - . misc_feature unknown_1270 ; note "this my be the N-term of SPNGAF72" ;
chromosome3 GeneDB CDS_parts 1643767 1644555 . - . mRNA SPCC663.05c ; systematic_id "SPCC663.05c" ; colour "2" ; gene "cia1 ||| SPCC663.05c ||| asf1" ; Alias "cia1" ; db_xref "SPD:10/10A01" ; synonym "asf1" ; GO "GO:0005678; chromatin assembly complex
GO:0042393; histone binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030528; transcription regulator activity
GO:0006335; DNA replication-dependent nucleosome assembly
GO:0006336; DNA replication-independent nucleosome assembly
GO:0006342; chromatin silencing
GO:0016573; histone acetylation
GO:0043486; histone exchange
GO:0006337; nucleosome disassembly
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, histone chaperone; db_xref=PMID:11856374; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YJL115W; date=19700101 ||| term=Hir protein binding region; db_xref=PMID:14680630; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cia1" ; product "histone chaperone Cia1" ;
chromosome3 GeneDB CDS 1643767 1644555 . - . mRNA SPCC663.05c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1644554 1644565 . - . mRNA SPCC663.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.05c" ; systematic_id "SPCC663.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1645115 1645876 . - . mRNA SPCC663.06c ; db_xref "SPD:40/40A12" ; systematic_id "SPCC663.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YKL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC663.06c" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB CDS 1645115 1645876 . - . mRNA SPCC663.06c ; colour "10" ;
chromosome3 GeneDB CDS_parts 1646645 1647396 . - . mRNA SPCC663.07c ; systematic_id "SPCC663.07c" ; pseudo "_no_value" ; colour "13" ; gene "SPCC663.07c" ; product "short chain dehydrogenase pseudogene" ;
chromosome3 GeneDB CDS 1646645 1647396 . - . mRNA SPCC663.07c ; colour "13" ;
chromosome3 GeneDB CDS_parts 1648000 1648761 . - . mRNA SPCC663.08c ; db_xref "SPD:40/40B01" ; systematic_id "SPCC663.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YKL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC663.08c" ; product "short chain dehydrogenase" ;
chromosome3 GeneDB CDS 1648000 1648761 . - . mRNA SPCC663.08c ; colour "10" ;
chromosome3 GeneDB 3'-UTR 1649075 1649527 . - . mRNA SPCC663.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.09c" ; systematic_id "SPCC663.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1649528 1650289 . - . mRNA SPCC663.09c ; db_xref "SPD:40/40B02" ; systematic_id "SPCC663.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YKL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC663.09c" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB CDS 1649528 1650289 . - . mRNA SPCC663.09c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 1650288 1650396 . - . mRNA SPCC663.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.09c" ; systematic_id "SPCC663.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1651272 1652780 . + . mRNA SPCC663.10 ; db_xref "SPD:40/40E12" ; systematic_id "SPCC663.10" ; colour "7" ; GO "GO:0008168; methyltransferase activity
GO:0016300; tRNA (uracil) methyltransferase activity
GO:0030488; tRNA methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC663.10" ; product "tRNA (uracil) methyltransferase (predicted)" ;
chromosome3 GeneDB CDS 1651272 1652780 . + . mRNA SPCC663.10 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1652781 1653177 . + . mRNA SPCC663.10 ; ID "SPCC663.10" ; systematic_id "SPCC663.10" ; note "mRNA from AU010355" ;
chromosome3 GeneDB 5'-UTR 1653863 1653875 . + . mRNA SPCC663.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.11" ; systematic_id "SPCC663.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1653876 1654712 . + . mRNA SPCC663.11 ; systematic_id "SPCC663.11" ; colour "10" ; gene "SPCC663.11" ; Alias "saf1" ; db_xref "SPD:10/10H12" ; GO "GO:0006397; mRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human WBP-11 ortholog; date=20081105 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "saf1" ; product "ww domain binding protein 11 (wbp11) ortholog" ; reserved_name "saf1" ;
chromosome3 GeneDB CDS 1653876 1654712 . + . mRNA SPCC663.11 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 1654713 1655180 . + . mRNA SPCC663.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.11" ; systematic_id "SPCC663.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1655669 1656679 . + . mRNA SPCC663.12 ; systematic_id "SPCC663.12" ; colour "2" ; gene "cid12 ||| SPCC663.12" ; Alias "cid12" ; db_xref "SPD:15/15A07" ; GO "GO:0031379; RNA-directed RNA polymerase complex
GO:0031380; nuclear RNA-directed RNA polymerase complex
GO:0005634; nucleus
GO:0005681; spliceosome complex
GO:0004652; polynucleotide adenylyltransferase activity
GO:0000077; DNA damage checkpoint
GO:0000077; DNA damage checkpoint
GO:0043631; RNA polyadenylation
GO:0051315; attachment of spindle microtubules to kinetochore during mitosis
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0007094; mitotic spindle checkpoint
GO:0031134; sister chromatid biorientation
GO:0031048; small RNA-mediated chromatin silencing
GO:0031048; small RNA-mediated chromatin silencing
GO:0031048; small RNA-mediated chromatin silencing" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=phenotype, sensitive to caffeine; qualifier=deletion; cv=phenotype; date=20060207 ||| term=phenotype, sensitive to HU; qualifier=deletion; cv=phenotype; date=20060207 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cid12" ; product "poly(A) polymerase Cid12" ;
chromosome3 GeneDB CDS 1655669 1656679 . + . mRNA SPCC663.12 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1656998 1657081 . - . mRNA SPCC663.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.13c" ; systematic_id "SPCC663.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1657082 1657516 . - . mRNA SPCC663.13c ; systematic_id "SPCC663.13c" ; colour "7" ; gene "SPCC663.13c" ; Alias "naa50" ; db_xref "SPD:03/03F11" ; synonym "nat5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR253W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; GO "GO:0031415; NatA complex
GO:0005737; cytoplasm
GO:0034212; peptide N-acetyltransferase activity
GO:0017196; N-terminal peptidyl-methionine acetylation" ; primary_name "naa50" ; product "NatA N-acetyltransferase subunit Naa50 (predicted)" ;
chromosome3 GeneDB CDS 1657082 1657516 . - . mRNA SPCC663.13c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1657515 1657546 . - . mRNA SPCC663.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.13c" ; systematic_id "SPCC663.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1657631 1659783 . - . mRNA SPCC663.14c ; db_xref "SPD:37/37F04" ; systematic_id "SPCC663.14c" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL053W and YGL139W and YPL221W and YOR365C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC663.14c" ; product "TRP-like ion channel (predicted)" ;
chromosome3 GeneDB CDS 1657631 1658545 . - . mRNA SPCC663.14c ; colour "7" ;
chromosome3 GeneDB CDS 1658635 1659783 . - . mRNA SPCC663.14c ; colour "7" ;
chromosome3 GeneDB misc_feature 1658546 1658563 . - . misc_feature unknown_1271 ; colour "6" ; note "ctaatctggttgatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1658629 1658634 . - . misc_feature unknown_1272 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 1660188 1660281 . - . mRNA SPCC663.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC663.15c" ; systematic_id "SPCC663.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1660282 1662255 . - . mRNA SPCC663.15c ; db_xref "SPD:27/27B12" ; systematic_id "SPCC663.15c" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR097W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=PX domain protein; date=20091018" ; GO "GO:0035091; phophoinositide binding" ; gene "SPCC663.15c" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 1660282 1662255 . - . mRNA SPCC663.15c ; colour "10" ;
chromosome3 GeneDB 3'-UTR 1662552 1662894 . - . mRNA SPCC1902.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1902.02" ; systematic_id "SPCC1902.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 1662793 1662895 . + . misc_feature unknown_1273 ; note "nominal overlap between cosmid SPCC663 and SPCC1902" ;
chromosome3 GeneDB CDS_parts 1662895 1664798 . - . mRNA SPCC1902.02 ; systematic_id "SPCC1902.02" ; colour "10" ; gene "SPCC1902.02 ||| SPCC663.16c ||| mug72" ; Alias "mug72" ; db_xref "SPD:26/26F02" ; synonym "SPCC663.16c" ; GO "GO:0032153; cell division site
GO:0051286; cell tip" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR251W and YPL032C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "mug72" ; product "oxidoreductase (predicted)" ;
chromosome3 GeneDB CDS 1662895 1664417 . - . mRNA SPCC1902.02 ; colour "10" ;
chromosome3 GeneDB CDS 1664483 1664644 . - . mRNA SPCC1902.02 ; colour "10" ;
chromosome3 GeneDB CDS 1664759 1664798 . - . mRNA SPCC1902.02 ; colour "10" ;
chromosome3 GeneDB misc_feature 1664418 1664435 . - . misc_feature unknown_1274 ; colour "6" ; note "ctaatcgagtcattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1664477 1664482 . - . misc_feature unknown_1275 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1664645 1664658 . - . misc_feature unknown_1276 ; colour "6" ; note "ctaacgtgctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1664753 1664758 . - . misc_feature unknown_1277 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1664797 1665136 . - . mRNA SPCC1902.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1902.02" ; systematic_id "SPCC1902.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1665576 1666309 . - . mRNA SPCC1902.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1902.01" ; systematic_id "SPCC1902.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1666310 1668877 . - . mRNA SPCC1902.01 ; systematic_id "SPCC1902.01" ; colour "2" ; gene "gaf1 ||| SPCC1902.01 ||| SPCC417.01c" ; note "orthologous to S. cerevisiae YFL021W but missing conserved N-terminal domain" ; Alias "gaf1" ; db_xref "SPD:37/37H01" ; synonym "SPCC417.01c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-GATA type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulates genes involved in nitrogen metabolism; qualifier=predicted; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0003677; DNA binding
GO:0005634; nucleus
GO:0043193; positive regulation of gene-specific transcription" ; primary_name "gaf1" ; product "transcription factor Gaf1" ;
chromosome3 GeneDB CDS 1666310 1668877 . - . mRNA SPCC1902.01 ; colour "2" ;
chromosome3 GeneDB misc_feature 1668367 1668493 . - . misc_feature unknown_1278 ; note "nominal overlap with cosmid SPCC1902, EM:AL049521 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 1668367 1668493 . + . misc_feature unknown_1279 ; note "nominal overlap with cosmid SPCC417, EM:AL049512 S. pombe chromosome 3" ;
chromosome3 GeneDB 5'-UTR 1668876 1669701 . - . mRNA SPCC1902.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1902.01" ; systematic_id "SPCC1902.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1669944 1670320 . - . mRNA SPCC417.02 ; ID "SPCC417.02" ; systematic_id "SPCC417.02" ; note "mRNA from AB044536" ;
chromosome3 GeneDB CDS_parts 1670321 1670605 . - . mRNA SPCC417.02 ; systematic_id "SPCC417.02" ; colour "2" ; gene "dad5 ||| hsk3 ||| hos3 ||| SPCC417.02" ; Alias "dad5" ; db_xref "SPD:01/01C11" ; synonym "hsk3 ||| hos3" ; GO "GO:0071470; cellular response to osmotic stress
GO:0042729; DASH complex
GO:0031134; sister chromatid biorientation
GO:0007052; mitotic spindle organization and biogenesis" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, High Osmolarity Sensitive; cv=name_description; date=20060207 ||| term=orthologous to S. cerevisiae YKL138C-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "dad5" ; product "DASH complex subunit Dad5" ;
chromosome3 GeneDB CDS 1670321 1670605 . - . mRNA SPCC417.02 ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1670606 1671551 . - . mRNA SPCC417.02 ; ID "SPCC417.02" ; systematic_id "SPCC417.02" ; note "mRNA from AB044536" ;
chromosome3 GeneDB CDS_parts 1672003 1672364 . + . mRNA SPCC417.03 ; db_xref "SPD:02/02D12" ; systematic_id "SPCC417.03" ; colour "6" ; gene "SPCC417.03" ; product "dubious" ;
chromosome3 GeneDB CDS 1672003 1672051 . + . mRNA SPCC417.03 ; colour "6" ;
chromosome3 GeneDB CDS 1672111 1672364 . + . mRNA SPCC417.03 ; colour "6" ;
chromosome3 GeneDB misc_feature 1672052 1672057 . + . misc_feature unknown_1280 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1672083 1672110 . + . misc_feature unknown_1281 ; colour "6" ; note "ctaatcatataccccatttttattatag, splice branch and acce ptor" ;
chromosome3 GeneDB CDS_parts 1673314 1673856 . + . mRNA SPCC417.04 ; db_xref "SPD:05/05E07" ; systematic_id "SPCC417.04" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC417.04" ; product "dubious" ;
chromosome3 GeneDB CDS 1673314 1673856 . + . mRNA SPCC417.04 ; colour "6" ;
chromosome3 GeneDB 3'-UTR 1675090 1675417 . - . mRNA SPCC417.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC417.05c" ; systematic_id "SPCC417.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1675418 1676956 . - . mRNA SPCC417.05c ; systematic_id "SPCC417.05c" ; colour "7" ; gene "chr2 ||| SPCC417.05c ||| cfh2" ; Alias "chr2" ; db_xref "SPD:24/24H12" ; synonym "cfh2" ; GO "GO:0051278; fungal-type cell wall polysaccharide biosynthetic process
GO:0046658; anchored to plasma membrane" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:15449309; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Chs Four Homologue; cv=name_description; date=20060106 ||| term=SEL1 repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL061C and YDL203C and YER096W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "chr2" ; product "chitin synthase regulatory factor Chr2 (predicted)" ;
chromosome3 GeneDB CDS 1675418 1676956 . - . mRNA SPCC417.05c ; colour "7" ;
chromosome3 GeneDB misc_RNA 1676911 1679347 . + . misc_RNA SPNCRNA.583 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.583" ; synonym "SPNG2AF61" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB 5'-UTR 1676955 1677016 . - . mRNA SPCC417.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC417.05c" ; systematic_id "SPCC417.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1677471 1679436 . - . mRNA SPCC417.06c ; systematic_id "SPCC417.06c" ; colour "2" ; gene "ppk35 ||| mug27 ||| SPCC417.06c ||| slk1" ; Alias "mug27" ; db_xref "SPD:27/27B04" ; synonym "ppk35 ||| slk1" ; GO "GO:0005628; forespore membrane
GO:0005628; forespore membrane
; spindle pole body
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0031321; ascospore-type prospore formation
GO:0032120; ascospore-type prospore membrane formation
GO:0032120; ascospore-type prospore membrane formation
GO:0045132; meiotic chromosome segregation
GO:0006468; protein amino acid phosphorylation
GO:0032889; regulation of vacuole fusion, non- autophagic
GO:0031028; septation initiation signaling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YGR092W and YPR111W; date=19700101 ||| term=Ndr kinase/myotonic dystrophy kinase/cot1/warts family; db_xref=PMID:18411246|PMID:18397994; date=20080416 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:18411246|PMID:18397994; date=20080416 ||| term=localization dependent on a proper forespore membrane; db_xref=PMID:183411246; date=20080416 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "mug27" ; product "meiosis specific protein kinase Mug27/Slk1" ;
chromosome3 GeneDB CDS 1677471 1678286 . - . mRNA SPCC417.06c ; colour "2" ;
chromosome3 GeneDB CDS 1678329 1678778 . - . mRNA SPCC417.06c ; colour "2" ;
chromosome3 GeneDB CDS 1678828 1679436 . - . mRNA SPCC417.06c ; colour "2" ;
chromosome3 GeneDB misc_feature 1678287 1678301 . - . misc_feature unknown_1282 ; colour "6" ; note "ctaaaaaaaaattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1678323 1678328 . - . misc_feature unknown_1283 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1678779 1678793 . - . misc_feature unknown_1284 ; colour "6" ; note "ctaacaacggctcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1678822 1678827 . - . misc_feature unknown_1285 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 1679877 1679923 . - . mRNA SPCC417.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC417.07c" ; systematic_id "SPCC417.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1679924 1683271 . - . mRNA SPCC417.07c ; systematic_id "SPCC417.07c" ; colour "2" ; gene "mto1 ||| mbo1 ||| mod20 ||| SPCC417.07c" ; Alias "mto1" ; db_xref "SPD:30/30D06" ; synonym "mbo1 ||| mod20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15004232; date=19700101 ||| term=phenotype, cytoskeletal defects, cytoplasmic microtubule nucleation defects, Non- SPB; qualifier=deletion; cv=phenotype; db_xref=PMID:19001497; date=20090114 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, MT Organizer; date=20090418 ||| term=name description, MOrphology Defective; date=20090418 ||| term=name description, MicrotuBule Organizer; date=20090418 ||| term=warning, primary name changed; cv=warning; date=20051504" ; GO "GO:0000923; equatorial microtubule organizing center
GO:0000923; equatorial microtubule organizing center
GO:0015630; microtubule cytoskeleton
GO:0005816; spindle pole body
GO:0005816; spindle pole body
GO:0005516; calmodulin binding
GO:0043015; gamma-tubulin binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0040023; establishment of nucleus localization
GO:0033566; gamma-tubulin complex localization
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center
GO:0030953; spindle astral microtubule organisation" ; primary_name "mto1" ; product "MT organizer Mto1" ;
chromosome3 GeneDB CDS 1679924 1683271 . - . mRNA SPCC417.07c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1683270 1683450 . - . mRNA SPCC417.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC417.07c" ; systematic_id "SPCC417.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 1684578 1684917 . + . LTR unknown_1286 ; colour "4" ; note "tf2-type lone LTR" ;
chromosome3 GeneDB 5'-UTR 1685650 1685665 . + . mRNA SPCC417.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC417.08" ; systematic_id "SPCC417.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1685666 1688809 . + . mRNA SPCC417.08 ; systematic_id "SPCC417.08" ; colour "2" ; gene "SPCC417.08 ||| tef3" ; Alias "tef3" ; db_xref "SPD:30/30B04" ; GO "GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YNL014W and YLR249W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tef3" ; product "translation elongation factor eEF3" ;
chromosome3 GeneDB CDS 1685666 1688809 . + . mRNA SPCC417.08 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1688810 1688951 . + . mRNA SPCC417.08 ; ID "SPCC417.08" ; db_xref "EMBL:D82575" ; systematic_id "SPCC417.08" ; note "mRNA from AU008968" ;
chromosome3 GeneDB tRNA 1689713 1689809 . + . tRNA SPCTRNASER.11 ; systematic_id "SPCTRNASER.11" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033447; AGA codon-amino acid adaptor activity" ; gene "SPCTRNASER.11" ; product "tRNA Serine" ; note "tRNA Ser" ;
chromosome3 GeneDB tRNA 1689817 1689888 . + . tRNA SPCTRNAMET.07 ; systematic_id "SPCTRNAMET.07" ; GO "GO:0005737; cytoplasm
GO:0006412; translation
GO:0033425; CAT codon-amino acid adaptor activity" ; gene "SPCTRNAMET.07" ; product "tRNA Methionine" ; note "tRNA Met anticodon CAT" ;
chromosome3 GeneDB rRNA 1690945 1691075 . + . rRNA SPRRNA.05 ; systematic_id "SPRRNA.05" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.05" ; product "5S rRNA" ; note "5S rRNA gene and flanks" ;
chromosome3 GeneDB CDS_parts 1691782 1694432 . - . mRNA SPCC417.09c ; db_xref "SPD:38/38G10" ; systematic_id "SPCC417.09c" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPAC3C7.04 and SPAC1486.10 and SPBP8B7.30C (paralogs); date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC417.09c" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB CDS 1691782 1692727 . - . mRNA SPCC417.09c ; colour "7" ;
chromosome3 GeneDB CDS 1692827 1693416 . - . mRNA SPCC417.09c ; colour "7" ;
chromosome3 GeneDB CDS 1693516 1693936 . - . mRNA SPCC417.09c ; colour "7" ;
chromosome3 GeneDB CDS 1694086 1694432 . - . mRNA SPCC417.09c ; colour "7" ;
chromosome3 GeneDB misc_feature 1692728 1692745 . - . misc_feature unknown_1287 ; colour "6" ; note "ctaacgtttaacttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1692821 1692826 . - . misc_feature unknown_1288 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1693417 1693437 . - . misc_feature unknown_1289 ; colour "6" ; note "ctaacccgtttttctcaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1693510 1693515 . - . misc_feature unknown_1290 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1693937 1693946 . - . misc_feature unknown_1291 ; colour "6" ; note "ctaatattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1694080 1694085 . - . misc_feature unknown_1292 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 1695726 1697252 . + . mRNA SPCC417.10 ; db_xref "SPD:24/24G09" ; systematic_id "SPCC417.10" ; colour "7" ; GO "GO:0071916; dipeptide transmembrane transporter activity
GO:0006810; transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR152W and YLR004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC417.10" ; product "dipeptide transmembrane transporter (predicted)" ;
chromosome3 GeneDB CDS 1695726 1697252 . + . mRNA SPCC417.10 ; colour "7" ;
chromosome3 GeneDB CDS_parts 1698190 1699497 . - . mRNA SPCC417.11c ; db_xref "SPD:22/22G06" ; systematic_id "SPCC417.11c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0042286; glutamate-1-semialdehyde 2,1- aminomutase activity
GO:0006779; porphyrin biosynthesis" ; gene "SPCC417.11c" ; product "glutamate-1-semialdehyde 2,1- aminomutaseaminotransferase (predicted)" ; EC_number "5.4.3.8" ;
chromosome3 GeneDB CDS 1698190 1699497 . - . mRNA SPCC417.11c ; colour "7" ;
chromosome3 GeneDB CDS_parts 1699739 1701301 . + . mRNA SPCC417.12 ; db_xref "SPD:25/25C02" ; systematic_id "SPCC417.12" ; colour "10" ; GO "GO:0004091; carboxylesterase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC417.12" ; product "carboxylesterase-lipase family protein" ;
chromosome3 GeneDB CDS 1699739 1701301 . + . mRNA SPCC417.12 ; colour "10" ;
chromosome3 GeneDB tRNA 1701899 1701972 . + . tRNA SPCTRNAASN.06 ; systematic_id "SPCTRNAASN.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033449; GTT codon-amino acid adaptor activity" ; gene "SPCTRNAASN.06" ; product "tRNA Asparagine" ; note "tRNA Asn anticodon GTT" ;
chromosome3 GeneDB rRNA 1702123 1702252 . + . rRNA SPRRNA.06 ; systematic_id "SPRRNA.06" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; gene "SPRRNA.06" ; product "5S rRNA" ; note "5s rRNA gene and flanks" ;
chromosome3 GeneDB misc_RNA 1702505 1702934 . - . misc_RNA SPNCRNA.32 ; Alias "prl32" ; db_xref "PMID:12597277 ||| EMBL:AB084844" ; systematic_id "SPNCRNA.32" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl32" ; gene "prl32 ||| SPNCRNA.32" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB CDS_parts 1702711 1702842 . - . mRNA SPCC417.15 ; systematic_id "SPCC417.15" ; controlled_curation "term=warning, longest ORF in feature; cv=warning; date=20060721" ; colour "6" ; gene "SPCC417.15" ; product "dubious" ;
chromosome3 GeneDB CDS 1702711 1702842 . - . mRNA SPCC417.15 ; colour "6" ;
chromosome3 GeneDB misc_feature 1702935 1706460 . - . misc_feature unknown_1293 ; note "low complexity gene free region" ;
chromosome3 GeneDB misc_feature 1704194 1708749 . + . misc_feature unknown_1294 ; note "nominal overlap with cosmid SPCC191 and cosmid SPCC417" ;
chromosome3 GeneDB 5'-UTR 1705835 1706460 . + . mRNA SPCC191.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC191.01" ; systematic_id "SPCC191.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1706461 1706997 . + . mRNA SPCC191.01 ; systematic_id "SPCC191.01" ; colour "8" ; gene "SPCC417.13 ||| SPCC191.01" ; Alias "SPCC417.13" ; db_xref "SPD:05/05D10" ; synonym "SPCC417.13" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "SPCC417.13" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1706461 1706997 . + . mRNA SPCC191.01 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 1706998 1707650 . + . mRNA SPCC191.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC191.01" ; systematic_id "SPCC191.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1708073 1708233 . - . mRNA SPCC191.02c ; ID "SPCC191.02c" ; db_xref "EMBL:D89121" ; systematic_id "SPCC191.02c" ;
chromosome3 GeneDB CDS_parts 1708234 1710222 . - . mRNA SPCC191.02c ; systematic_id "SPCC191.02c" ; colour "7" ; gene "SPCC191.02c ||| SPCC417.14c" ; db_xref "SPD:27/27C09" ; synonym "SPCC417.14c" ; GO "GO:0003987; acetate-CoA ligase activity
GO:0006084; acetyl-CoA metabolism
GO:0016208; AMP binding
GO:0019654; acetate fermentation
GO:0005829; cytosol
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL054C and YLR153C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "acetyl-CoA ligase (predicted)" ; EC_number "6.2.1.1" ;
chromosome3 GeneDB CDS 1708234 1710222 . - . mRNA SPCC191.02c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1710221 1710511 . - . mRNA SPCC191.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC191.02c" ; systematic_id "SPCC191.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1710842 1710940 . - . mRNA SPCC191.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC191.03c" ; systematic_id "SPCC191.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1710941 1711294 . - . mRNA SPCC191.03c ; db_xref "SPD:02/02D03" ; systematic_id "SPCC191.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC191.03c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1710941 1711294 . - . mRNA SPCC191.03c ; colour "8" ;
chromosome3 GeneDB CDS_parts 1711522 1711824 . - . mRNA SPCC191.04c ; db_xref "SPD:01/01E01" ; systematic_id "SPCC191.04c" ; colour "6" ; gene "SPCC191.04c" ; product "dubious" ;
chromosome3 GeneDB CDS 1711522 1711824 . - . mRNA SPCC191.04c ; colour "6" ;
chromosome3 GeneDB 3'-UTR 1711998 1712318 . - . mRNA SPCC191.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC191.05c" ; systematic_id "SPCC191.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1712319 1712954 . - . mRNA SPCC191.05c ; db_xref "SPD:07/07C09" ; systematic_id "SPCC191.05c" ; colour "7" ; GO "GO:0050144; nucleoside deoxyribosyltransferase activity
GO:0009116; nucleoside metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20081203 ||| term=species distribution, conserved in Eukaryotes; date=20081203 ||| term=species distribution, conserved in Vertebrates; date=20081203 ||| term=species distribution, conserved in Metazoa; date=20081203 ||| term=human RCL ortholog; date=20100824" ; gene "SPCC191.05c" ; product "nucleoside 2-deoxyribosyltransferase (predicted)" ;
chromosome3 GeneDB CDS 1712319 1712954 . - . mRNA SPCC191.05c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1712953 1713536 . - . mRNA SPCC191.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC191.05c" ; systematic_id "SPCC191.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1714139 1714555 . + . mRNA SPCC191.06 ; db_xref "SPD:03/03C12" ; systematic_id "SPCC191.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC191.06" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1714139 1714555 . + . mRNA SPCC191.06 ; colour "8" ;
chromosome3 GeneDB 5'-UTR 1714660 1714734 . + . mRNA SPCC191.07 ; ID "SPCC191.07" ; systematic_id "SPCC191.07" ; note "mRNA from AU010442" ;
chromosome3 GeneDB CDS_parts 1714735 1715064 . + . mRNA SPCC191.07 ; systematic_id "SPCC191.07" ; colour "7" ; gene "cyc1 ||| SPCC191.07" ; Alias "cyc1" ; db_xref "SPD:01/01H05" ; GO "GO:0045155; electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity
GO:0005746; mitochondrial electron transport chain
GO:0006123; mitochondrial electron transport, cytochrome c to oxygen
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL039C and YJR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cyc1" ; product "cytochrome c (predicted)" ;
chromosome3 GeneDB CDS 1714735 1715064 . + . mRNA SPCC191.07 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1715065 1715798 . + . mRNA SPCC191.07 ; ID "SPCC191.07" ; systematic_id "SPCC191.07" ; note "mRNA from AU008446" ;
chromosome3 GeneDB LTR 1716281 1716629 . - . LTR unknown_1295 ; colour "4" ; note "tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 1716751 1717155 . + . mRNA SPCC191.08 ; db_xref "SPD:03/03B04" ; systematic_id "SPCC191.08" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL260C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ORAOV1 ortholog; date=20100223" ; gene "SPCC191.08" ; product "DUF1715 family protein" ;
chromosome3 GeneDB CDS 1716751 1717155 . + . mRNA SPCC191.08 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 1717156 1717605 . + . mRNA SPCC191.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC191.08" ; systematic_id "SPCC191.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB snoRNA 1717920 1718087 . + . snoRNA SPSNORNA.41 ; Alias "snR46" ; db_xref "EMBL:AJ632007 ||| PMID:15716270" ; systematic_id "SPSNORNA.41" ; controlled_curation "term=orthologous to S. cerevisiae snR46; date=20070104" ; primary_name "snR46" ; product "small nucleolar RNA snR46" ;
chromosome3 GeneDB CDS_parts 1719325 1720014 . - . mRNA SPCC191.09c ; systematic_id "SPCC191.09c" ; colour "2" ; gene "gst1 ||| SPCC191.09c" ; Alias "gst1" ; db_xref "SPD:08/08A06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL229C; date=19700101 ||| term=gene expression, transcriptionally regulated by Pap1; db_xref=PMID:15650694; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=thioredoxin family; date=20081111" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004364; glutathione transferase activity
GO:0046982; protein heterodimerization activity
GO:0042803; protein homodimerization activity
GO:0042493; response to drug
GO:0034599; cellular response to oxidative stress" ; primary_name "gst1" ; product "glutathione S-transferase Gst1" ; EC_number "2.5.1.18" ;
chromosome3 GeneDB CDS 1719325 1720014 . - . mRNA SPCC191.09c ; colour "2" ;
chromosome3 GeneDB CDS_parts 1721828 1722277 . + . mRNA SPCC191.10 ; db_xref "SPD:03/03H10" ; systematic_id "SPCC191.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC191.10" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1721828 1722277 . + . mRNA SPCC191.10 ; colour "8" ;
chromosome3 GeneDB CDS_parts 1724306 1726051 . + . mRNA SPCC191.11 ; systematic_id "SPCC191.11" ; colour "2" ; gene "inv1 ||| SPCC191.11" ; Alias "inv1" ; db_xref "SPD:45/45G05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, glycosylated; cv=pt_mod; qualifier=N-linked|predicted; db_xref=PMID:9535817; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL162W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005576; extracellular region
GO:0000324; vacuole
GO:0004564; beta-fructofuranosidase activity
GO:0034484; raffinose catabolic process
GO:0005987; sucrose catabolic process" ; primary_name "inv1" ; product "beta-fructofuranosidase" ; EC_number "3.2.1.26" ;
chromosome3 GeneDB CDS 1724306 1726051 . + . mRNA SPCC191.11 ; colour "2" ;
chromosome3 GeneDB CDS_parts 1726173 1727116 . - . mRNA SPCC1450.01c ; systematic_id "SPCC1450.01c" ; colour "13" ; gene "SPCC191.12c ||| SPCC1450.01c" ; Alias "SPCC191.12c" ; db_xref "SPD:13/13C04" ; pseudo "_no_value" ; synonym "SPCC191.12c" ; primary_name "SPCC191.12c" ; product "pseudogene" ;
chromosome3 GeneDB CDS 1726173 1727116 . - . mRNA SPCC1450.01c ; colour "13" ;
chromosome3 GeneDB misc_feature 1726651 1726656 . - . misc_feature unknown_1296 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1726855 1729193 . + . misc_feature unknown_1297 ; note "nominal overlap with cosmid SPCC191 and cosmid SPCC1450" ;
chromosome3 GeneDB misc_feature 1727065 1727070 . - . misc_feature unknown_1298 ; colour "6" ; note "gtatcc, splice donor sequence" ;
chromosome3 GeneDB misc_RNA 1728359 1728703 . + . misc_RNA SPNCRNA.500 ; db_xref "PMID:18488015" ; synonym "SPNG2489" ; systematic_id "SPNCRNA.500" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 1728823 1728860 . + . mRNA SPCC1450.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.02" ; systematic_id "SPCC1450.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1728861 1730597 . + . mRNA SPCC1450.02 ; systematic_id "SPCC1450.02" ; colour "2" ; gene "bdf1 ||| brf1 ||| SPCC191.13 ||| SPCC1450.02" ; Alias "bdf1" ; db_xref "SPD:35/35H03" ; synonym "brf1 ||| SPCC191.13" ; GO "GO:0006338; chromatin remodeling
GO:0000812; Swr1 complex
GO:0043486; histone exchange" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=orthologous to S. cerevisiae YLR399C and YDL070W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bdf1" ; product "Swr1 complex bromodomain subunit Brf1" ;
chromosome3 GeneDB CDS 1728861 1730597 . + . mRNA SPCC1450.02 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1730598 1731246 . + . mRNA SPCC1450.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.02" ; systematic_id "SPCC1450.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB intron 1731358 1731418 . + . intron unknown_1299 ; note "possible intron in UTR" ;
chromosome3 GeneDB 5'-UTR 1731409 1731428 . + . mRNA SPCC1450.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.03" ; systematic_id "SPCC1450.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1731429 1732151 . + . mRNA SPCC1450.03 ; db_xref "SPD:08/08F01" ; systematic_id "SPCC1450.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPAC20H4.01; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; gene "SPCC1450.03" ; product "ribonucleoprotein (RNP) complex (predicted)" ;
chromosome3 GeneDB CDS 1731429 1732151 . + . mRNA SPCC1450.03 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1732152 1732348 . + . mRNA SPCC1450.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.03" ; systematic_id "SPCC1450.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1732774 1733665 . + . mRNA SPCC1450.04 ; systematic_id "SPCC1450.04" ; colour "2" ; gene "SPCC1450.04 ||| tef5" ; Alias "tef5" ; db_xref "SPD:12/12B07" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation
GO:0005853; eukaryotic translation elongation factor 1 complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tef5" ; product "translation elongation factor EF-1 beta subunit (eEF1B)" ;
chromosome3 GeneDB CDS 1732774 1732853 . + . mRNA SPCC1450.04 ; colour "2" ;
chromosome3 GeneDB CDS 1733101 1733665 . + . mRNA SPCC1450.04 ; colour "2" ;
chromosome3 GeneDB misc_feature 1732854 1732859 . + . misc_feature unknown_1300 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 1732854 1733100 . + . intron SPCC1450.04 ; db_xref "EMBL:D82574" ; systematic_id "SPCC1450.04" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1733087 1733100 . + . misc_feature unknown_1301 ; colour "6" ; note "ctaacgttttatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1733666 1733845 . + . mRNA SPCC1450.04 ; ID "SPCC1450.04" ; db_xref "EMBL:D82574" ; systematic_id "SPCC1450.04" ;
chromosome3 GeneDB CDS_parts 1734767 1735183 . - . mRNA SPCC1450.05c ; systematic_id "SPCC1450.05c" ; colour "2" ; gene "rox3 ||| med19 ||| SPCC1450.05c" ; Alias "rox3" ; db_xref "SPD:03/03D01" ; synonym "med19" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0005634; nucleus
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL093C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rox3" ; product "mediator complex subunit Med19/Rox3" ;
chromosome3 GeneDB CDS 1734767 1735183 . - . mRNA SPCC1450.05c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1735272 1735426 . - . mRNA SPCC1450.06c ; Alias "grx3" ; ID "SPCC1450.06c" ; db_xref "EMBL:AY350733" ; systematic_id "SPCC1450.06c" ; primary_name "grx3" ;
chromosome3 GeneDB CDS_parts 1735427 1735927 . - . mRNA SPCC1450.06c ; systematic_id "SPCC1450.06c" ; colour "2" ; gene "grx3 ||| SPCC1450.06c" ; Alias "grx3" ; db_xref "SPD:04/04H09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=20070523 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15796926; date=19700101 ||| term=orthologous to S. cerevisiae YBR014C and YDL010W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0031965; nuclear membrane
GO:0008794; arsenate reductase (glutaredoxin) activity
GO:0015035; protein disulfide oxidoreductase activity
GO:0034599; cellular response to oxidative stress
GO:0033554; cellular response to stress
GO:0019430; removal of superoxide radicals" ; primary_name "grx3" ; product "monothiol glutaredoxin Grx3" ; EC_number "1.20.4.1" ;
chromosome3 GeneDB CDS 1735427 1735927 . - . mRNA SPCC1450.06c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1735928 1736538 . - . mRNA SPCC1450.06c ; Alias "grx3" ; ID "SPCC1450.06c" ; db_xref "EMBL:AY350733" ; systematic_id "SPCC1450.06c" ; primary_name "grx3" ;
chromosome3 GeneDB CDS_parts 1736606 1737652 . - . mRNA SPCC1450.07c ; db_xref "SPD:16/16A01" ; systematic_id "SPCC1450.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC1450.07c" ; product "D-amino acid oxidase (predicted)" ; EC_number "1.4.3.3" ;
chromosome3 GeneDB CDS 1736606 1737652 . - . mRNA SPCC1450.07c ; colour "7" ;
chromosome3 GeneDB LTR 1738418 1738761 . - . LTR unknown_1302 ; colour "4" ; note "tf2-type LTR" ;
chromosome3 GeneDB repeat_region 1738762 1740960 . - . repeat_region unknown_1303 ; note "wtf element" ;
chromosome3 GeneDB CDS_parts 1739338 1740648 . - . mRNA SPCC1450.08c ; systematic_id "SPCC1450.08c" ; colour "12" ; gene "wtf16 ||| SPCC1450.08c" ; db_xref "SPD:51/51F04" ; Alias "wtf16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf16" ; product "wtf element Wtf16" ;
chromosome3 GeneDB CDS 1739338 1739789 . - . mRNA SPCC1450.08c ; colour "12" ;
chromosome3 GeneDB CDS 1739835 1740047 . - . mRNA SPCC1450.08c ; colour "12" ;
chromosome3 GeneDB CDS 1740097 1740342 . - . mRNA SPCC1450.08c ; colour "12" ;
chromosome3 GeneDB CDS 1740510 1740648 . - . mRNA SPCC1450.08c ; colour "12" ;
chromosome3 GeneDB misc_feature 1739790 1739800 . - . misc_feature unknown_1304 ; colour "6" ; note "ctaacacgcag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1739790 1739834 . - . intron SPCC1450.08c ; systematic_id "SPCC1450.08c" ; note "confirmed intron: intron confirmed by EST hits" ;
chromosome3 GeneDB misc_feature 1739829 1739834 . - . misc_feature unknown_1305 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1740048 1740059 . - . misc_feature unknown_1306 ; colour "6" ; note "ctaactcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1740091 1740096 . - . misc_feature unknown_1307 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1740343 1740355 . - . misc_feature unknown_1308 ; colour "6" ; note "ttaatttaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1740504 1740509 . - . misc_feature unknown_1309 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB LTR 1740961 1741307 . - . LTR unknown_1310 ; colour "4" ; note "tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 1741588 1743459 . - . mRNA SPCC1450.09c ; db_xref "SPD:27/27D10" ; systematic_id "SPCC1450.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004620; phospholipase activity
GO:0046475; glycerophospholipid catabolism
GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region" ; gene "SPCC1450.09c" ; product "phospholipase (predicted)" ; EC_number "3.1.1.5" ;
chromosome3 GeneDB CDS 1741588 1743459 . - . mRNA SPCC1450.09c ; colour "7" ;
chromosome3 GeneDB misc_RNA 1744243 1745234 . + . misc_RNA SPNCRNA.501 ; db_xref "PMID:18488015" ; synonym "SPNG2491" ; systematic_id "SPNCRNA.501" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 3'-UTR 1746153 1746293 . - . mRNA SPCC1450.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.10c" ; systematic_id "SPCC1450.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1746294 1747988 . - . mRNA SPCC1450.10c ; db_xref "SPD:35/35D02" ; systematic_id "SPCC1450.10c" ; colour "7" ; GO "GO:0008901; ferredoxin hydrogenase activity
GO:0016226; iron-sulfur cluster assembly
GO:0005829; cytosol" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL240C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1450.10c" ; product "iron hydrogenase (predicted)" ;
chromosome3 GeneDB CDS 1746294 1747817 . - . mRNA SPCC1450.10c ; colour "7" ;
chromosome3 GeneDB CDS 1747896 1747988 . - . mRNA SPCC1450.10c ; colour "7" ;
chromosome3 GeneDB misc_feature 1747818 1747829 . - . misc_feature unknown_1311 ; colour "6" ; note "ctaacatgatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1747890 1747895 . - . misc_feature unknown_1312 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1747987 1748022 . - . mRNA SPCC1450.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.10c" ; systematic_id "SPCC1450.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1748297 1748632 . - . mRNA SPCC1450.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.11c" ; systematic_id "SPCC1450.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1748633 1752649 . - . mRNA SPCC1450.11c ; systematic_id "SPCC1450.11c" ; colour "2" ; gene "cek1 ||| SPCC1450.11c" ; Alias "cek1" ; db_xref "SPD:39/39E01" ; GO "GO:0007346; regulation of progression through mitotic cell cycle
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8065367; date=19700101 ||| term=orthologous to S. cerevisiae YFL033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cek1" ; product "serine/threonine protein kinase Cek1" ;
chromosome3 GeneDB CDS 1748633 1752649 . - . mRNA SPCC1450.11c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1752648 1752918 . - . mRNA SPCC1450.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.11c" ; systematic_id "SPCC1450.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1754236 1754286 . + . mRNA SPCC1450.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.12" ; systematic_id "SPCC1450.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1754287 1757207 . + . mRNA SPCC1450.12 ; db_xref "SPD:47/47E02" ; systematic_id "SPCC1450.12" ; colour "10" ; GO "GO:0035091; phosphoinositide binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR097W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1450.12" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 1754287 1754565 . + . mRNA SPCC1450.12 ; colour "10" ;
chromosome3 GeneDB CDS 1754634 1754927 . + . mRNA SPCC1450.12 ; colour "10" ;
chromosome3 GeneDB CDS 1755051 1755558 . + . mRNA SPCC1450.12 ; colour "10" ;
chromosome3 GeneDB CDS 1755636 1756369 . + . mRNA SPCC1450.12 ; colour "10" ;
chromosome3 GeneDB CDS 1756557 1757207 . + . mRNA SPCC1450.12 ; colour "10" ;
chromosome3 GeneDB misc_feature 1754566 1754571 . + . misc_feature unknown_1313 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1754612 1754633 . + . misc_feature unknown_1314 ; colour "6" ; note "ctaaccagatattctttgttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1754928 1754933 . + . misc_feature unknown_1315 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1755035 1755050 . + . misc_feature unknown_1316 ; colour "6" ; note "ctaacgaatattccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1755559 1755564 . + . misc_feature unknown_1317 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1755622 1755635 . + . misc_feature unknown_1318 ; colour "6" ; note "ctaacactttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1756370 1756375 . + . misc_feature unknown_1319 ; colour "6" ; note "gtcatt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1756534 1756556 . + . misc_feature unknown_1320 ; colour "6" ; note "ttaacctcgttgaacatacccag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1757208 1757316 . + . mRNA SPCC1450.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.12" ; systematic_id "SPCC1450.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1757425 1757486 . - . mRNA SPCC1450.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.13c" ; systematic_id "SPCC1450.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1757487 1758113 . - . mRNA SPCC1450.13c ; db_xref "SPD:07/07B09" ; systematic_id "SPCC1450.13c" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=subunit composition, homotrimer; cv=subunit_composition; db_xref=PMID:14690539; date=19700101 ||| term=orthologous to S. cerevisiae YBR256C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009231; riboflavin biosynthesis
GO:0004746; riboflavin synthase activity" ; gene "SPCC1450.13c" ; product "riboflavin synthase" ; EC_number "2.5.1.9" ;
chromosome3 GeneDB CDS 1757487 1758113 . - . mRNA SPCC1450.13c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1758112 1758361 . - . mRNA SPCC1450.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.13c" ; systematic_id "SPCC1450.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1759295 1760998 . - . mRNA SPCC1450.14c ; systematic_id "SPCC1450.14c" ; colour "2" ; gene "ero12 ||| SPCC1450.14c" ; Alias "ero12" ; db_xref "SPD:36/36G03" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0015035; protein disulfide oxidoreductase activity
GO:0006467; protein thiol-disulfide exchange
GO:0034975; protein folding in the endoplasmic reticulum" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML130C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; primary_name "ero12" ; product "ER protein folding oxidoreductin Ero1b" ;
chromosome3 GeneDB CDS 1759295 1760998 . - . mRNA SPCC1450.14c ; colour "2" ;
chromosome3 GeneDB misc_feature 1760999 1761022 . - . misc_feature unknown_1321 ; colour "6" ; note "ctgacatttttaaaataataatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1761111 1761116 . - . misc_feature unknown_1322 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1761221 1761515 . + . mRNA SPCC1450.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.15" ; systematic_id "SPCC1450.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1761516 1763077 . + . mRNA SPCC1450.15 ; systematic_id "SPCC1450.15" ; colour "7" ; gene "SPCC1450.15" ; note "looks like a gene merge but was sequenced independently in redundant clone c1100" ; db_xref "SPD:45/45B01" ; GO "GO:0000234; phosphoethanolamine N- methyltransferase activity
GO:0006506; GPI anchor biosynthesis
GO:0005789; endoplasmic reticulum membrane
GO:0006666; 3-keto-sphinganine metabolism
GO:0005783; endoplasmic reticulum
GO:0016651; oxidoreductase activity, acting on NADH or NADPH
GO:0051377; mannose-ethanolamine phosphotransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20061012 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; date=20061012 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR302W (C-term); date=19700101 ||| term=orthologous to S. cerevisiae YBR265W (N-term); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human FVT1 ortholog; date=20100217" ; product "pig-F (predicted)" ;
chromosome3 GeneDB CDS 1761516 1761584 . + . mRNA SPCC1450.15 ; colour "7" ;
chromosome3 GeneDB CDS 1761635 1763077 . + . mRNA SPCC1450.15 ; colour "7" ;
chromosome3 GeneDB misc_feature 1761585 1761590 . + . misc_feature unknown_1323 ; colour "6" ; note "gtaact, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1761622 1761634 . + . misc_feature unknown_1324 ; colour "6" ; note "ctaacagtacaag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1763078 1763148 . + . mRNA SPCC1450.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.15" ; systematic_id "SPCC1450.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1763310 1763496 . - . mRNA SPCC1450.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.16c" ; systematic_id "SPCC1450.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1763497 1765038 . - . mRNA SPCC1450.16c ; systematic_id "SPCC1450.16c" ; colour "7" ; gene "SPCC1450.16c" ; db_xref "SPD:25/25A07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR313C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004806; triacylglycerol lipase activity
GO:0019433; triacylglycerol catabolic process" ; clustalx_file "clustalx/chromosome3.contig.seq.00001.out" ; product "triacylglycerol lipase (predicted)" ; EC_number "3.1.1.3" ;
chromosome3 GeneDB CDS 1763497 1765038 . - . mRNA SPCC1450.16c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1765037 1765237 . - . mRNA SPCC1450.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1450.16c" ; systematic_id "SPCC1450.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1766086 1768821 . + . mRNA SPCC1442.01 ; systematic_id "SPCC1442.01" ; colour "2" ; gene "ste6 ||| SPCC1450.17 ||| SPCC1442.01" ; Alias "ste6" ; db_xref "SPD:39/39A11" ; synonym "SPCC1450.17" ; GO "GO:0000747; conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Ste11; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YLR310C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sterile; db_xref=PMID:3185514; date=20101013 ||| term=name description, STErile; db_xref=PMID:3185514; date=20101013" ; primary_name "ste6" ; product "guanyl-nucleotide exchange factor Ste6" ;
chromosome3 GeneDB CDS 1766086 1768821 . + . mRNA SPCC1442.01 ; colour "2" ;
chromosome3 GeneDB misc_feature 1768033 1774235 . + . misc_feature unknown_1325 ; note "nominal overlap with cosmid SPCC1450 and cosmid SPCC1442" ;
chromosome3 GeneDB CDS_parts 1768993 1770738 . + . mRNA SPCC1442.02 ; systematic_id "SPCC1442.02" ; colour "10" ; gene "SPCC1450.18 ||| SPCC1442.02" ; Alias "SPCC1450.18" ; db_xref "SPD:36/36A01" ; synonym "SPCC1450.18" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL060W and YBR216C; attribution=pers. comm. E. Hartsuiker YGL060w; date=20080116 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20080202" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0007346; regulation of mitotic cell cycle" ; primary_name "SPCC1450.18" ; product "central kinetochore associated family protein (predicted)" ;
chromosome3 GeneDB CDS 1768993 1769166 . + . mRNA SPCC1442.02 ; colour "10" ;
chromosome3 GeneDB CDS 1769224 1770738 . + . mRNA SPCC1442.02 ; colour "10" ;
chromosome3 GeneDB misc_feature 1769167 1769172 . + . misc_feature unknown_1326 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1769205 1769223 . + . misc_feature unknown_1327 ; colour "6" ; note "ctaataatgttgcaattag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1770739 1771067 . + . mRNA SPCC1442.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.02" ; systematic_id "SPCC1442.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1771287 1771491 . + . mRNA SPCC1442.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.03" ; systematic_id "SPCC1442.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1771492 1772631 . + . mRNA SPCC1442.03 ; systematic_id "SPCC1442.03" ; colour "7" ; gene "SPCC1450.19 ||| SPCC1442.03" ; Alias "SPCC1450.19" ; db_xref "SPD:18/18A03" ; synonym "SPCC1450.19" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0005215; transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YMR166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; primary_name "SPCC1450.19" ; product "mitochondrial ATP-Mg/Pi carrier (predicted)" ;
chromosome3 GeneDB CDS 1771492 1771887 . + . mRNA SPCC1442.03 ; colour "7" ;
chromosome3 GeneDB CDS 1772011 1772631 . + . mRNA SPCC1442.03 ; colour "7" ;
chromosome3 GeneDB misc_feature 1771888 1771893 . + . misc_feature unknown_1328 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1771991 1772010 . + . misc_feature unknown_1329 ; colour "6" ; note "ctaacgagcgtttttcatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1772632 1773323 . + . mRNA SPCC1442.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.03" ; systematic_id "SPCC1442.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1773925 1775429 . - . mRNA SPCC1442.04c ; systematic_id "SPCC1442.04c" ; colour "7" ; gene "SPCC1442.04c" ; note "WARNING there are 4 bases missing from this sequence AACATCTTCCAAGTTCTCAT GATC CTTTAAAGATTCCTCAAGGT, which will change the C-terminal region slightly. This will be fixed in the next round of corrections" ; db_xref "SPD:19/19F02" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006311; meiotic gene conversion
GO:0007131; reciprocal meiotic recombination" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL250W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "meiotic recombination protein (predicted)" ;
chromosome3 GeneDB CDS 1773925 1774233 . - . mRNA SPCC1442.04c ; colour "7" ;
chromosome3 GeneDB CDS 1774236 1775429 . - . mRNA SPCC1442.04c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1774078 1774199 . - . mRNA SPCC1442.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.04c" ; systematic_id "SPCC1442.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1775428 1775522 . - . mRNA SPCC1442.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.04c" ; systematic_id "SPCC1442.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 1775992 1776073 . - . tRNA SPCTRNASER.12 ; systematic_id "SPCTRNASER.12" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033447; AGA codon-amino acid adaptor activity" ; gene "SPCTRNASER.12" ; product "tRNA Serine" ; note "tRNA Ser anticodon AGA" ;
chromosome3 GeneDB 3'-UTR 1776511 1776593 . - . mRNA SPCC1442.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.05c" ; systematic_id "SPCC1442.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1776594 1777127 . - . mRNA SPCC1442.05c ; db_xref "SPD:05/05D06" ; systematic_id "SPCC1442.05c" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR235C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1442.05c" ; product "mitochondrial protein" ;
chromosome3 GeneDB CDS 1776594 1777127 . - . mRNA SPCC1442.05c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 1778105 1778155 . + . mRNA SPCC1442.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.06" ; systematic_id "SPCC1442.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1778156 1779195 . + . mRNA SPCC1442.06 ; systematic_id "SPCC1442.06" ; colour "7" ; gene "pre8 ||| SPCC1442.06" ; Alias "pre8" ; db_xref "SPD:15/15G06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; GO "GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; primary_name "pre8" ; product "20S proteasome component alpha 2, Pre8 (predicted)" ; EC_number "3.4.25.1" ;
chromosome3 GeneDB CDS 1778156 1778270 . + . mRNA SPCC1442.06 ; colour "7" ;
chromosome3 GeneDB CDS 1778367 1778470 . + . mRNA SPCC1442.06 ; colour "7" ;
chromosome3 GeneDB CDS 1778540 1778694 . + . mRNA SPCC1442.06 ; colour "7" ;
chromosome3 GeneDB CDS 1778832 1779195 . + . mRNA SPCC1442.06 ; colour "7" ;
chromosome3 GeneDB misc_feature 1778271 1778276 . + . misc_feature unknown_1330 ; colour "6" ; note "gtacta, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1778352 1778366 . + . misc_feature unknown_1331 ; colour "6" ; note "ctaacataattatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1778471 1778476 . + . misc_feature unknown_1332 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1778521 1778539 . + . misc_feature unknown_1333 ; colour "6" ; note "ctaacggttttatgtacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1778695 1778700 . + . misc_feature unknown_1334 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1778815 1778831 . + . misc_feature unknown_1335 ; colour "6" ; note "ctaacttcattatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1779196 1779535 . + . mRNA SPCC1442.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.06" ; systematic_id "SPCC1442.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1779535 1779611 . - . mRNA SPCC1442.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.07c" ; systematic_id "SPCC1442.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1779612 1780460 . - . mRNA SPCC1442.07c ; db_xref "SPD:11/11B05" ; systematic_id "SPCC1442.07c" ; colour "7" ; GO "GO:0016925; protein sumoylation
GO:0006974; response to DNA damage stimulus
GO:0008270; zinc ion binding
GO:0008237; metallopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe SPAC521.02 and S. cerevisiae YHR134W, but has an additional N- terminal ubiquitin family domain; date=20060106 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20070523 ||| term=ubiquitin family protein; date=19700101" ; gene "SPCC1442.07c" ; product "ubiquitin/metalloprotease fusion protein (predicted)" ;
chromosome3 GeneDB CDS 1779612 1780460 . - . mRNA SPCC1442.07c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1780459 1780693 . - . mRNA SPCC1442.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.07c" ; systematic_id "SPCC1442.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1781505 1782032 . - . mRNA SPCC1442.08c ; systematic_id "SPCC1442.08c" ; colour "7" ; gene "cox12 ||| SPCC1442.08c" ; Alias "cox12" ; db_xref "SPD:03/03B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0033617; mitochondrial respiratory chain complex IV assembly
GO:0005751; mitochondrial respiratory chain complex IV
GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration" ; primary_name "cox12" ; product "cytochrome c oxidase subunit VIb (predicted)" ; EC_number "1.9.3.1" ;
chromosome3 GeneDB CDS 1781505 1781563 . - . mRNA SPCC1442.08c ; colour "7" ;
chromosome3 GeneDB CDS 1781637 1781744 . - . mRNA SPCC1442.08c ; colour "7" ;
chromosome3 GeneDB CDS 1781830 1781855 . - . mRNA SPCC1442.08c ; colour "7" ;
chromosome3 GeneDB CDS 1781920 1781935 . - . mRNA SPCC1442.08c ; colour "7" ;
chromosome3 GeneDB CDS 1781981 1782032 . - . mRNA SPCC1442.08c ; colour "7" ;
chromosome3 GeneDB misc_feature 1781564 1781581 . - . misc_feature unknown_1336 ; colour "6" ; note "ctaacaatgtttcgacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1781631 1781636 . - . misc_feature unknown_1337 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1781745 1781764 . - . misc_feature unknown_1338 ; colour "6" ; note "ttaacacattgctacgatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1781824 1781829 . - . misc_feature unknown_1339 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_RNA 1782127 1783070 . + . misc_RNA SPNCRNA.502 ; db_xref "PMID:18488015" ; synonym "SPNG2497" ; systematic_id "SPNCRNA.502" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=2007100" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 1783662 1783785 . + . mRNA SPCC1442.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.09" ; systematic_id "SPCC1442.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1783786 1785438 . + . mRNA SPCC1442.09 ; systematic_id "SPCC1442.09" ; colour "7" ; gene "trp3 ||| SPCC1442.09" ; Alias "trp3" ; db_xref "SPD:45/45E03" ; GO "GO:0004049; anthranilate synthase activity
GO:0000162; tryptophan biosynthetic process
GO:0005950; anthranilate synthase complex
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER090W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "trp3" ; product "anthranilate synthase component I (predicted)" ;
chromosome3 GeneDB CDS 1783786 1783791 . + . mRNA SPCC1442.09 ; colour "7" ;
chromosome3 GeneDB CDS 1783975 1785438 . + . mRNA SPCC1442.09 ; colour "7" ;
chromosome3 GeneDB misc_feature 1783792 1783797 . + . misc_feature unknown_1340 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1783960 1783974 . + . misc_feature unknown_1341 ; colour "6" ; note "ctaatactattttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1785439 1785552 . + . mRNA SPCC1442.09 ; ID "SPCC1442.09" ; systematic_id "SPCC1442.09" ; note "mRNA from SPD256" ;
chromosome3 GeneDB CDS_parts 1785998 1786979 . - . mRNA SPCC1442.10c ; systematic_id "SPCC1442.10c" ; colour "2" ; gene "rpb3 ||| SPCC1442.10c" ; note "The Rpb2-Rpb3-Rpb11 complex has DNA binding activity. Alone, Rpb3 exhibits virtually no DNA binding activity (PMID:9325316)" ; Alias "rpb3" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:14/14B12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006366; transcription from RNA polymerase II promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0003677; DNA binding
GO:0005665; DNA-directed RNA polymerase II, core complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding" ; primary_name "rpb3" ; product "RNA polymerase II subunit 3" ;
chromosome3 GeneDB CDS 1785998 1786761 . - . mRNA SPCC1442.10c ; colour "2" ;
chromosome3 GeneDB CDS 1786808 1786857 . - . mRNA SPCC1442.10c ; colour "2" ;
chromosome3 GeneDB CDS 1786900 1786979 . - . mRNA SPCC1442.10c ; colour "2" ;
chromosome3 GeneDB misc_feature 1786762 1786776 . - . misc_feature unknown_1342 ; colour "6" ; note "ctaatgatgttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1786802 1786807 . - . misc_feature unknown_1343 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1786858 1786871 . - . misc_feature unknown_1344 ; colour "6" ; note "ctaatagttgaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1786894 1786899 . - . misc_feature unknown_1345 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_RNA 1787163 1787440 . + . misc_RNA SPNCRNA.503 ; db_xref "PMID:18488015" ; synonym "SPNG2499" ; systematic_id "SPNCRNA.503" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 1787290 1787878 . + . mRNA SPCC1442.19 ; db_xref "PMID:18488015" ; systematic_id "SPCC1442.19" ; controlled_curation "term=orthologous to S. cerevisiae YKL167C; date=20080102 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0032543; mitochondrial translation" ; gene "SPCC1442.19" ; product "mitochondrial ribosomal protein Mrp49 (predicted)" ;
chromosome3 GeneDB CDS 1787290 1787429 . + . mRNA SPCC1442.19 ; colour "7" ;
chromosome3 GeneDB CDS 1787611 1787878 . + . mRNA SPCC1442.19 ; colour "7" ;
chromosome3 GeneDB CDS_parts 1788002 1788550 . - . mRNA SPCC1442.11c ; db_xref "SPD:05/05F06" ; systematic_id "SPCC1442.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1442.11c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 1788002 1788550 . - . mRNA SPCC1442.11c ; colour "8" ;
chromosome3 GeneDB tRNA 1788949 1789020 . + . tRNA SPCTRNAPRO.09 ; systematic_id "SPCTRNAPRO.09" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033448; AGG codon-amino acid adaptor activity" ; gene "SPCTRNAPRO.09" ; product "tRNA Proline" ; note "tRNA Pro anticodon AGG" ;
chromosome3 GeneDB 5'-UTR 1789586 1789595 . + . mRNA SPCC1442.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.12" ; systematic_id "SPCC1442.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1789596 1790718 . + . mRNA SPCC1442.12 ; systematic_id "SPCC1442.12" ; colour "2" ; gene "SPCC1442.12 ||| pps1" ; Alias "pps1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00561; ||| SPD:17/17F08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17905925; date=20080114 ||| term=orthologous to S. cerevisiae YER026C; date=19700101 ||| term=modification, phosphorylated; evidence=ISS; with=SGD:S000000828; cv=pt_mod; date=20100212 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Vertebrates; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; GO "GO:0005737; cytoplasm
GO:0005789; endoplasmic reticulum membrane
GO:0003882; CDP-diacylglycerol-serine O- phosphatidyltransferase activity
GO:0003882; CDP-diacylglycerol-serine O- phosphatidyltransferase activity
GO:0070317; maintenance of G0 arrest?
GO:0031505; cell wall organization and biogenesis
GO:0010512; negative regulation of phosphatidylinositol biosynthetic process
GO:0006646; phosphatidylethanolamine biosynthetic process
GO:0006659; phosphatidylserine biosynthesis
GO:0032956; regulation of actin cytoskeleton organization and biogenesis
GO:0071775; regulation of cell cycle cytokinesis
GO:0030176; integral to endoplasmic reticulum membrane
GO:0070317; negative regulation of G1 to G0 transition" ; primary_name "pps1" ; product "phosphatidylserine synthase Pps1" ; EC_number "2.7.8.8" ;
chromosome3 GeneDB CDS 1789596 1789717 . + . mRNA SPCC1442.12 ; colour "2" ;
chromosome3 GeneDB CDS 1789805 1790036 . + . mRNA SPCC1442.12 ; colour "2" ;
chromosome3 GeneDB CDS 1790320 1790718 . + . mRNA SPCC1442.12 ; colour "2" ;
chromosome3 GeneDB misc_feature 1789718 1789723 . + . misc_feature unknown_1346 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1789787 1789804 . + . misc_feature unknown_1347 ; colour "6" ; note "ctaactagaggattgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1790037 1790042 . + . misc_feature unknown_1348 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1790308 1790319 . + . misc_feature unknown_1349 ; colour "6" ; note "ctaacaaaatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1790719 1791195 . + . mRNA SPCC1442.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.12" ; systematic_id "SPCC1442.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1791346 1791909 . - . mRNA SPCC1442.13c ; db_xref "SPD:05/05H11" ; systematic_id "SPCC1442.13c" ; colour "10" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; date=20020415 ||| term=warning, gene structure updated; date=20010312" ; gene "SPCC1442.13c" ; product "RNA-binding protein, G-patch type" ;
chromosome3 GeneDB CDS 1791346 1791909 . - . mRNA SPCC1442.13c ; colour "10" ;
chromosome3 GeneDB 3'-UTR 1792660 1792836 . - . mRNA SPCC1442.14c ; ID "SPCC1442.14c" ; systematic_id "SPCC1442.14c" ; note "mRNA from AU014496" ;
chromosome3 GeneDB CDS_parts 1792837 1793238 . - . mRNA SPCC1442.14c ; db_xref "SPD:03/03A12" ; systematic_id "SPCC1442.14c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0009117; nucleotide metabolism
GO:0000166; nucleotide binding
GO:0016787; hydrolase activity
GO:0043530; adenosine 5'-monophosphoramidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HIT family; date=19700101 ||| term=orthologous to S. cerevisiae YDL125C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC1442.14c" ; product "adenosine 5'-monophosphoramidase (predicted)" ;
chromosome3 GeneDB CDS 1792837 1793238 . - . mRNA SPCC1442.14c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1793237 1793286 . - . mRNA SPCC1442.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.14c" ; systematic_id "SPCC1442.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1793562 1793765 . - . mRNA SPCC1442.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.15c" ; systematic_id "SPCC1442.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1793766 1794374 . - . mRNA SPCC1442.15c ; systematic_id "SPCC1442.15c" ; colour "2" ; gene "cox18 ||| SPCC1442.15c" ; Alias "cox18" ; db_xref "SPD:42/42D09" ; GO "GO:0031305; integral to mitochondrial inner membrane
GO:0008535; respiratory chain complex IV assembly
GO:0051204; protein insertion into mitochondrial membrane
GO:0032977; membrane insertase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:16911509; date=20070201 ||| term=orthologous to S. cerevisiae YGR062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complements S. cerevisiae COX18; db_xref=PMID:16911509; date=20101012" ; primary_name "cox18" ; product "mitochondrial inner membrane protein Cox18" ;
chromosome3 GeneDB CDS 1793766 1794374 . - . mRNA SPCC1442.15c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1794373 1794440 . - . mRNA SPCC1442.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.15c" ; systematic_id "SPCC1442.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1794883 1794978 . - . mRNA SPCC1442.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.16c" ; systematic_id "SPCC1442.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1794979 1795968 . - . mRNA SPCC1442.16c ; systematic_id "SPCC1442.16c" ; colour "7" ; gene "SPCC1442.16c ||| SPCC285.01c ||| zta1" ; Alias "zta1" ; db_xref "SPD:14/14D07" ; synonym "SPCC285.01c" ; GO "GO:0003960; NADPH:quinone reductase activity
GO:0017091; AU-specific RNA binding
GO:0016071; mRNA metabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR046C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "zta1" ; product "NADPH quinone oxidoreductase/ARE-binding protein (predicted)" ; EC_number "1.6.5.5" ;
chromosome3 GeneDB CDS 1794979 1795968 . - . mRNA SPCC1442.16c ; colour "7" ;
chromosome3 GeneDB misc_feature 1795618 1797532 . + . misc_feature unknown_1350 ; note "nominal overlap with cosmid SPCC1442 and cosmid SPCC285" ;
chromosome3 GeneDB 5'-UTR 1795967 1796037 . - . mRNA SPCC1442.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.16c" ; systematic_id "SPCC1442.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1796281 1797240 . - . mRNA SPCC1442.17c ; systematic_id "SPCC1442.17c" ; colour "7" ; gene "ist1 ||| SPCC285.02c ||| SPCC1442.17c" ; Alias "ist1" ; db_xref "SPD:13/13F03" ; synonym "SPCC285.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL265C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "; endosome
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; primary_name "ist1" ; product "MVB sorting pathway protein (predicted)" ;
chromosome3 GeneDB CDS 1796281 1796682 . - . mRNA SPCC1442.17c ; colour "7" ;
chromosome3 GeneDB CDS 1796758 1796838 . - . mRNA SPCC1442.17c ; colour "7" ;
chromosome3 GeneDB CDS 1796908 1797240 . - . mRNA SPCC1442.17c ; colour "7" ;
chromosome3 GeneDB misc_feature 1796683 1796696 . - . misc_feature unknown_1351 ; colour "6" ; note "ctaatcaattctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1796752 1796757 . - . misc_feature unknown_1352 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1796839 1796860 . - . misc_feature unknown_1353 ; colour "6" ; note "ctaacttgtttattatttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1796902 1796907 . - . misc_feature unknown_1354 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1797239 1797246 . - . mRNA SPCC1442.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1442.17c" ; systematic_id "SPCC1442.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1797992 1799806 . + . mRNA SPCC285.03 ; db_xref "SPD:36/36F06" ; systematic_id "SPCC285.03" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0004004; ATP-dependent RNA helicase activity
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YNR038W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC285.03" ; product "ATP-dependent RNA helicase Dbp6 (predicted)" ;
chromosome3 GeneDB CDS 1797992 1799806 . + . mRNA SPCC285.03 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1799807 1799933 . + . mRNA SPCC285.03 ; ID "SPCC285.03" ; systematic_id "SPCC285.03" ; note "mRNA from SPD259" ;
chromosome3 GeneDB 5'-UTR 1800821 1801070 . + . mRNA SPCC285.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.04" ; systematic_id "SPCC285.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1801071 1801445 . + . mRNA SPCC285.04 ; db_xref "SPD:02/02G02" ; systematic_id "SPCC285.04" ; colour "10" ; GO "GO:0005496; steroid binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC285.04" ; product "transthyretin (predicted)" ;
chromosome3 GeneDB CDS 1801071 1801445 . + . mRNA SPCC285.04 ; colour "10" ;
chromosome3 GeneDB 5'-UTR 1802140 1802661 . + . mRNA SPCC285.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.05" ; systematic_id "SPCC285.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1802662 1803708 . + . mRNA SPCC285.05 ; db_xref "SPD:16/16A02" ; systematic_id "SPCC285.05" ; colour "7" ; GO "GO:0015211; purine nucleoside transmembrane transporter activity
GO:0035427; purine nucleoside transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20100824" ; gene "SPCC285.05" ; product "purine nucleoside transmembrane transporter (predicted)" ;
chromosome3 GeneDB CDS 1802662 1803708 . + . mRNA SPCC285.05 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1803709 1803792 . + . mRNA SPCC285.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.05" ; systematic_id "SPCC285.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1805166 1806450 . - . mRNA SPCC285.06c ; systematic_id "SPCC285.06c" ; colour "12" ; gene "wtf17 ||| SPCC285.06c" ; Alias "wtf17" ; obsolete_name "wtf4-pseudo" ; synonym "SPCC285.06c" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf17" ; product "wtf element Wtf17" ;
chromosome3 GeneDB CDS 1805166 1805242 . - . mRNA SPCC285.06c ; colour "12" ;
chromosome3 GeneDB CDS 1805299 1805352 . - . mRNA SPCC285.06c ; colour "12" ;
chromosome3 GeneDB CDS 1805393 1805614 . - . mRNA SPCC285.06c ; colour "12" ;
chromosome3 GeneDB CDS 1805664 1805909 . - . mRNA SPCC285.06c ; colour "12" ;
chromosome3 GeneDB CDS 1806076 1806225 . - . mRNA SPCC285.06c ; colour "12" ;
chromosome3 GeneDB CDS 1806411 1806450 . - . mRNA SPCC285.06c ; colour "12" ;
chromosome3 GeneDB misc_feature 1805243 1805256 . - . misc_feature unknown_1355 ; colour "6" ; note "ctaattatttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1805293 1805298 . - . misc_feature unknown_1356 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1805353 1805364 . - . misc_feature unknown_1357 ; colour "6" ; note "ctaacgatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1805387 1805392 . - . misc_feature unknown_1358 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1805615 1805626 . - . misc_feature unknown_1359 ; colour "6" ; note "ctaactcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1805658 1805663 . - . misc_feature unknown_1360 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1805910 1805922 . - . misc_feature unknown_1361 ; colour "6" ; note "ttaatttaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1806070 1806075 . - . misc_feature unknown_1362 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1806226 1806251 . - . misc_feature unknown_1363 ; colour "6" ; note "ttcacttgctattattgaaaaaacag, splice branch and accept or" ;
chromosome3 GeneDB misc_feature 1806405 1806410 . - . misc_feature unknown_1364 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 1807004 1808534 . - . mRNA SPCC285.07c ; systematic_id "SPCC285.07c" ; colour "12" ; gene "wtf18 ||| SPCC285.07c" ; obsolete_name "wtf5" ; Alias "wtf18" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf18" ; product "wtf element Wtf18" ;
chromosome3 GeneDB CDS 1807004 1807476 . - . mRNA SPCC285.07c ; colour "12" ;
chromosome3 GeneDB CDS 1807513 1807836 . - . mRNA SPCC285.07c ; colour "12" ;
chromosome3 GeneDB CDS 1807885 1808157 . - . mRNA SPCC285.07c ; colour "12" ;
chromosome3 GeneDB CDS 1808396 1808534 . - . mRNA SPCC285.07c ; colour "12" ;
chromosome3 GeneDB misc_feature 1807477 1807487 . - . misc_feature unknown_1365 ; colour "6" ; note "ctaacatacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1807507 1807512 . - . misc_feature unknown_1366 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1807837 1807848 . - . misc_feature unknown_1367 ; colour "6" ; note "ctaactcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1807879 1807884 . - . misc_feature unknown_1368 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1808158 1808173 . - . misc_feature unknown_1369 ; colour "6" ; note "ctaactataaatgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1808390 1808395 . - . misc_feature unknown_1370 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB LTR 1808837 1809175 . - . LTR unknown_1371 ; colour "4" ; note "tf2-type lone LTR" ;
chromosome3 GeneDB 5'-UTR 1809346 1809364 . + . mRNA SPCC285.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.08" ; systematic_id "SPCC285.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1809365 1810259 . + . mRNA SPCC285.08 ; systematic_id "SPCC285.08" ; colour "7" ; gene "ret2 ||| SPCC285.08" ; db_xref "SPD:12/12C03" ; Alias "ret2" ; GO "GO:0030126; COPI vesicle coat
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, appears to be truncated; date=20100127" ; primary_name "ret2" ; product "coatomer delta subunit Ret2 (predicted)" ;
chromosome3 GeneDB CDS 1809365 1809367 . + . mRNA SPCC285.08 ; colour "7" ;
chromosome3 GeneDB CDS 1809412 1809451 . + . mRNA SPCC285.08 ; colour "7" ;
chromosome3 GeneDB CDS 1809510 1809913 . + . mRNA SPCC285.08 ; colour "7" ;
chromosome3 GeneDB CDS 1809984 1810259 . + . mRNA SPCC285.08 ; colour "7" ;
chromosome3 GeneDB misc_feature 1809368 1809373 . + . misc_feature unknown_1372 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1809398 1809411 . + . misc_feature unknown_1373 ; colour "6" ; note "ttaacaaagggtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1809452 1809457 . + . misc_feature unknown_1374 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1809490 1809509 . + . misc_feature unknown_1375 ; colour "6" ; note "cttacagtaaatttgtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1809914 1809919 . + . misc_feature unknown_1376 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1809968 1809983 . + . misc_feature unknown_1377 ; colour "6" ; note "ctaatgcactttctag splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1810260 1810336 . + . mRNA SPCC285.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.08" ; systematic_id "SPCC285.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1810337 1811031 . - . mRNA SPCC285.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.09c" ; systematic_id "SPCC285.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1811032 1812631 . - . mRNA SPCC285.09c ; systematic_id "SPCC285.09c" ; colour "2" ; gene "cgs2 ||| SPCC285.09c ||| pde1" ; Alias "cgs2" ; db_xref "SPD:25/25F07" ; synonym "pde1" ; GO "GO:0004115; 3',5'-cyclic-AMP phosphodiesterase activity
GO:0006198; cAMP catabolism
GO:0019933; cAMP-mediated signaling
GO:0031137; regulation of conjugation with cellular fusion
GO:0007194; negative regulation of adenylate cyclase activity
GO:0006995; cellular response to nitrogen starvation
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070523 ||| term=species distribution, conserved in Bacteria; date=20070523 ||| term=orthologous to S. cerevisiae YGL248W; date=19700101 ||| term=pathway, links stress-activated MAPK (Sty1) pathway to cAMP-dependent protein kinase (Pka1) pathway; db_xref=PMID:15448137; date=20090104 ||| term=gene expression, transcriptionally regulates Pka1 pathway genes; db_xref=PMID:15448137; cv=gene_ex; date=20090104" ; primary_name "cgs2" ; product "cAMP-specific phosphodiesterase Cgs2" ; EC_number "3.1.4.17" ;
chromosome3 GeneDB CDS 1811032 1811560 . - . mRNA SPCC285.09c ; colour "2" ;
chromosome3 GeneDB CDS 1812013 1812425 . - . mRNA SPCC285.09c ; colour "2" ;
chromosome3 GeneDB CDS 1812472 1812480 . - . mRNA SPCC285.09c ; colour "2" ;
chromosome3 GeneDB CDS 1812542 1812631 . - . mRNA SPCC285.09c ; colour "2" ;
chromosome3 GeneDB misc_feature 1811561 1811575 . - . misc_feature unknown_1378 ; colour "6" ; note "ctaacctctttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1812007 1812012 . - . misc_feature unknown_1379 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1812426 1812437 . - . misc_feature unknown_1380 ; colour "6" ; note "ctgacttattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1812466 1812471 . - . misc_feature unknown_1381 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1812481 1812499 . - . misc_feature unknown_1382 ; colour "6" ; note "ctaacgttaacgaaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1812536 1812541 . - . misc_feature unknown_1383 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1812630 1812646 . - . mRNA SPCC285.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.09c" ; systematic_id "SPCC285.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1814240 1814334 . - . mRNA SPCC285.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.10c" ; systematic_id "SPCC285.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1814335 1815483 . - . mRNA SPCC285.10c ; db_xref "SPD:18/18B08" ; systematic_id "SPCC285.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR171C and YKL124W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC285.10c" ; product "SPRY domain protein" ;
chromosome3 GeneDB CDS 1814335 1815483 . - . mRNA SPCC285.10c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 1815482 1816000 . - . mRNA SPCC285.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.10c" ; systematic_id "SPCC285.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1816102 1817572 . + . mRNA SPCC285.11 ; systematic_id "SPCC285.11" ; colour "7" ; gene "ucp10 ||| SPCC285.11" ; Alias "ucp10" ; db_xref "SPD:23/23F11" ; GO "GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ucp10" ; product "UBA/UAS domain protein Ucp10 (predicted)" ;
chromosome3 GeneDB CDS 1816102 1816209 . + . mRNA SPCC285.11 ; colour "7" ;
chromosome3 GeneDB CDS 1816397 1817572 . + . mRNA SPCC285.11 ; colour "7" ;
chromosome3 GeneDB misc_feature 1816210 1816215 . + . misc_feature unknown_1384 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1816378 1816396 . + . misc_feature unknown_1385 ; colour "6" ; note "ctaactgttttatgattag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1817573 1818035 . + . mRNA SPCC285.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.11" ; systematic_id "SPCC285.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1818365 1818423 . + . mRNA SPCC285.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.12" ; systematic_id "SPCC285.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1818424 1818819 . + . mRNA SPCC285.12 ; systematic_id "SPCC285.12" ; colour "7" ; gene "lsm7 ||| SPCC285.12" ; Alias "lsm7" ; db_xref "SPD:03/03A03" ; GO "GO:0003723; RNA binding
GO:0006402; mRNA catabolism
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005688; U6 snRNP
GO:0030490; maturation of SSU-rRNA" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL147W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "lsm7" ; product "U6 snRNP-associated protein Lsm7 (predicted)" ;
chromosome3 GeneDB CDS 1818424 1818473 . + . mRNA SPCC285.12 ; colour "7" ;
chromosome3 GeneDB CDS 1818528 1818819 . + . mRNA SPCC285.12 ; colour "7" ;
chromosome3 GeneDB misc_feature 1818474 1818479 . + . misc_feature unknown_1386 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 1818474 1818527 . + . intron SPCC285.12 ; systematic_id "SPCC285.12" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1818511 1818527 . + . misc_feature unknown_1387 ; colour "6" ; note "ctaactttcttaaatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1818820 1818924 . + . mRNA SPCC285.12 ; ID "SPCC285.12" ; systematic_id "SPCC285.12" ; note "mRNA from AU012395" ;
chromosome3 GeneDB 3'-UTR 1819027 1819116 . - . mRNA SPCC285.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.13c" ; systematic_id "SPCC285.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1819117 1821327 . - . mRNA SPCC285.13c ; db_xref "SPD:38/38A06" ; systematic_id "SPCC285.13c" ; colour "7" ; GO "GO:0017056; structural constituent of nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0000059; protein import into nucleus, docking
GO:0005643; nuclear pore" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAR002W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC285.13c" ; product "nucleoporin Nup60 (predicted)" ;
chromosome3 GeneDB CDS 1819117 1821327 . - . mRNA SPCC285.13c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1821326 1821448 . - . mRNA SPCC285.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.13c" ; systematic_id "SPCC285.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1823315 1823373 . + . mRNA SPCC285.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.14" ; systematic_id "SPCC285.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1823374 1827049 . + . mRNA SPCC285.14 ; systematic_id "SPCC285.14" ; colour "7" ; gene "SPCC285.14" ; Alias "trs130" ; db_xref "SPD:39/39C01" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030008; TRAPP complex
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR218C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trs130" ; product "TRAPP complex subunit Trs130 (predicted)" ;
chromosome3 GeneDB CDS 1823374 1823401 . + . mRNA SPCC285.14 ; colour "7" ;
chromosome3 GeneDB CDS 1823451 1823677 . + . mRNA SPCC285.14 ; colour "7" ;
chromosome3 GeneDB CDS 1823766 1825436 . + . mRNA SPCC285.14 ; colour "7" ;
chromosome3 GeneDB CDS 1825481 1825906 . + . mRNA SPCC285.14 ; colour "7" ;
chromosome3 GeneDB CDS 1825949 1827049 . + . mRNA SPCC285.14 ; colour "7" ;
chromosome3 GeneDB misc_feature 1823402 1823407 . + . misc_feature unknown_1388 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1823432 1823450 . + . misc_feature unknown_1389 ; colour "6" ; note "ctaatgaagtgctgtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1823678 1823683 . + . misc_feature unknown_1390 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1823748 1823765 . + . misc_feature unknown_1391 ; colour "6" ; note "ctaacattgtaaaaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1825437 1825442 . + . misc_feature unknown_1392 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1825465 1825480 . + . misc_feature unknown_1393 ; colour "6" ; note "ttaacaatggaaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1825907 1825912 . + . misc_feature unknown_1394 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1825935 1825948 . + . misc_feature unknown_1395 ; colour "6" ; note "ctaaccttatttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1826951 1827103 . - . mRNA SPCC285.15c ; Alias "rps2802" ; ID "SPCC285.15c" ; db_xref "EMBL:D85030" ; systematic_id "SPCC285.15c" ; primary_name "rps2802" ;
chromosome3 GeneDB CDS_parts 1827104 1827360 . - . mRNA SPCC285.15c ; systematic_id "SPCC285.15c" ; colour "2" ; gene "rps2802 ||| rps28-2 ||| rps28 ||| SPCC285.15c" ; Alias "rps2802" ; db_xref "SPD:01/01B10" ; synonym "rps28-2 ||| rps28" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000028; ribosomal small subunit assembly
GO:0030490; maturation of SSU-rRNA
GO:2000208; positive regulation of ribosomal small subunit export from nucleus
GO:0005730; nucleolus
GO:0000469; cleavage involved in rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR167C and YLR264W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps2802" ; product "40S ribosomal protein S28, Rps2802" ;
chromosome3 GeneDB CDS 1827104 1827242 . - . mRNA SPCC285.15c ; colour "2" ;
chromosome3 GeneDB CDS 1827293 1827360 . - . mRNA SPCC285.15c ; colour "2" ;
chromosome3 GeneDB misc_feature 1827243 1827257 . - . misc_feature unknown_1396 ; colour "6" ; note "ctaatattgatacag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1827243 1827292 . - . intron SPCC285.15c ; Alias "rps2802" ; db_xref "EMBL:D85030" ; systematic_id "SPCC285.15c" ; primary_name "rps2802" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1827287 1827292 . - . misc_feature unknown_1397 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 1827717 1827801 . - . mRNA SPCC285.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.16c" ; systematic_id "SPCC285.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1827802 1831681 . - . mRNA SPCC285.16c ; systematic_id "SPCC285.16c" ; colour "2" ; gene "msh6 ||| SPCC285.16c" ; Alias "msh6" ; db_xref "SPD:48/48F04" ; GO "GO:0005524; ATP binding
GO:0032137; guanine/thymine mispair binding
GO:0043570; maintenance of DNA repeat elements
GO:0006298; mismatch repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060926 ||| term=orthologous to S. cerevisiae YDR097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human MSH6 ortholog; date=20100217" ; primary_name "msh6" ; product "MutS protein homolog" ;
chromosome3 GeneDB CDS 1827802 1830972 . - . mRNA SPCC285.16c ; colour "2" ;
chromosome3 GeneDB CDS 1831088 1831681 . - . mRNA SPCC285.16c ; colour "2" ;
chromosome3 GeneDB misc_feature 1830973 1830987 . - . misc_feature unknown_1398 ; colour "6" ; note "ctaacaatatgctag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1830973 1831087 . - . intron SPCC285.16c ; systematic_id "SPCC285.16c" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1831082 1831087 . - . misc_feature unknown_1399 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1831952 1831982 . + . mRNA SPCC285.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.17" ; systematic_id "SPCC285.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1831983 1833060 . + . mRNA SPCC285.17 ; systematic_id "SPCC285.17" ; colour "2" ; gene "spp27 ||| uaf30 ||| SPCC285.17" ; Alias "spp27" ; db_xref "SPD:16/16F11" ; synonym "uaf30" ; GO "GO:0000500; RNA polymerase I upstream activating factor complex
GO:0003701; RNA polymerase I transcription factor activity
GO:0005515; protein binding
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR295W and YMR233W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; primary_name "spp27" ; product "RNA polymerase I upstream activation factor complex subunit Spp27" ;
chromosome3 GeneDB CDS 1831983 1832175 . + . mRNA SPCC285.17 ; colour "2" ;
chromosome3 GeneDB CDS 1832248 1832459 . + . mRNA SPCC285.17 ; colour "2" ;
chromosome3 GeneDB CDS 1832593 1832742 . + . mRNA SPCC285.17 ; colour "2" ;
chromosome3 GeneDB CDS 1832914 1833060 . + . mRNA SPCC285.17 ; colour "2" ;
chromosome3 GeneDB misc_feature 1832176 1832181 . + . misc_feature unknown_1400 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1832232 1832247 . + . misc_feature unknown_1401 ; colour "6" ; note "ttaaccaaacttgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1832460 1832465 . + . misc_feature unknown_1402 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1832580 1832592 . + . misc_feature unknown_1403 ; colour "6" ; note "ctaactaacgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1832743 1832748 . + . misc_feature unknown_1404 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1832898 1832913 . + . misc_feature unknown_1405 ; colour "6" ; note "ctaacttaattaatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1833061 1834097 . + . mRNA SPCC285.17 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC285.17" ; systematic_id "SPCC285.17" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 1833344 1835613 . + . misc_feature unknown_1406 ; note "nominal overlap with cosmid SPCC1223 and cosmid SPCC285" ;
chromosome3 GeneDB 5'-UTR 1834592 1834612 . + . mRNA SPCC1223.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1223.01" ; systematic_id "SPCC1223.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1834613 1836914 . + . mRNA SPCC1223.01 ; systematic_id "SPCC1223.01" ; colour "7" ; gene "SPCC285.18 ||| SPCC1223.01" ; Alias "SPCC285.18" ; db_xref "SPD:46/46G09" ; synonym "SPCC285.18" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C2H2 type; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDR266C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "SPCC285.18" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome3 GeneDB CDS 1834613 1834709 . + . mRNA SPCC1223.01 ; colour "7" ;
chromosome3 GeneDB CDS 1834755 1834952 . + . mRNA SPCC1223.01 ; colour "7" ;
chromosome3 GeneDB CDS 1835011 1836914 . + . mRNA SPCC1223.01 ; colour "7" ;
chromosome3 GeneDB misc_feature 1834710 1834715 . + . misc_feature unknown_1407 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1834740 1834754 . + . misc_feature unknown_1408 ; colour "6" ; note "ttaacacatttcaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1834741 1834754 . + . misc_feature unknown_1409 ; colour "6" ; note "ttaacacatttcaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1834953 1834958 . + . misc_feature unknown_1410 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1834998 1835010 . + . misc_feature unknown_1411 ; colour "6" ; note "ctaacttaattag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1836915 1837176 . + . mRNA SPCC1223.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1223.01" ; systematic_id "SPCC1223.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 1837689 1838380 . - . misc_RNA SPNCRNA.10 ; Alias "prl10" ; db_xref "PMID:12597277 ||| EMBL:AB084822" ; systematic_id "SPNCRNA.10" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl10" ; gene "prl10 ||| SPNCRNA.10" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB CDS_parts 1838485 1839525 . + . mRNA SPCC1223.02 ; systematic_id "SPCC1223.02" ; colour "2" ; gene "nmt1 ||| thi3 ||| SPCC1223.02" ; Alias "nmt1" ; db_xref "SPD:15/15G09" ; synonym "thi3" ; GO "; regulation of thiamin biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, repressed by thiamine; cv=gene_ex; date=20060804 ||| term=gene expression, transcriptionally regulated by Thi1; db_xref=PMID:8163491; cv=gene_ex; date=20060804 ||| term=gene expression, transcriptionally regulated by Thi5; db_xref=PMID:16874521; cv=gene_ex; date=20060804 ||| term=orthologous to S. cerevisiae YFL058W and YJR156C and YNL332W and YDL244W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "nmt1" ; product "no message in thiamine Nmt1" ;
chromosome3 GeneDB CDS 1838485 1839525 . + . mRNA SPCC1223.02 ; colour "2" ;
chromosome3 GeneDB misc_RNA 1839578 1840266 . + . misc_RNA SPNCRNA.504 ; db_xref "PMID:18488015" ; synonym "SPNG2511" ; systematic_id "SPNCRNA.504" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 3'-UTR 1840586 1840686 . - . mRNA SPCC1223.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1223.03c" ; systematic_id "SPCC1223.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1840687 1842636 . - . mRNA SPCC1223.03c ; systematic_id "SPCC1223.03c" ; colour "7" ; db_xref "SPD:26/26H12" ; Alias "gut2" ; GO "GO:0009331; glycerol-3-phosphate dehydrogenase complex
GO:0005739; mitochondrion
GO:0004368; glycerol-3-phosphate dehydrogenase activity
GO:0005975; carbohydrate metabolism
GO:0006072; glycerol-3-phosphate metabolism
GO:0006116; NADH oxidation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL155C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gut2" ; product "glycerol-3-phosphate dehydrogenase Gut2 (predicted)" ; EC_number "1.1.5.3" ;
chromosome3 GeneDB CDS 1840687 1842636 . - . mRNA SPCC1223.03c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1842635 1843228 . - . mRNA SPCC1223.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1223.03c" ; systematic_id "SPCC1223.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 1844639 1844710 . + . tRNA SPCTRNAHIS.04 ; systematic_id "SPCTRNAHIS.04" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033452; GTG codon-amino acid adaptor activity" ; gene "SPCTRNAHIS.04" ; product "tRNA Histidine" ; note "tRNA His anticodon GTG, Cove score 52.82" ;
chromosome3 GeneDB CDS_parts 1844960 1846194 . - . mRNA SPCC1223.04c ; systematic_id "SPCC1223.04c" ; colour "2" ; gene "SPCC1223.04c ||| mug76 ||| set11" ; Alias "set11" ; db_xref "SPD:19/19F12" ; synonym "mug76" ; GO "GO:0016279; protein-lysine N-methyltransferase activity
GO:0006479; protein amino acid methylation
GO:0005730; nucleolus
GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human SETD4 homolog; date=19700101 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YDR198C; date=19700101 ||| term=target is SPCC31H12.04c; db_xref=PMID:18195021; date=20080121 ||| term=target is SPCC16C4.13c; db_xref=PMID:18195021; date=20080121 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Rpl12; db_xref=PMID:18195021; date=20100629" ; primary_name "set11" ; product "ribosomal protein lysine methyltransferase Set11" ;
chromosome3 GeneDB CDS 1844960 1845973 . - . mRNA SPCC1223.04c ; colour "2" ;
chromosome3 GeneDB CDS 1846063 1846194 . - . mRNA SPCC1223.04c ; colour "2" ;
chromosome3 GeneDB misc_feature 1845974 1845986 . - . misc_feature unknown_1412 ; colour "6" ; note "ttaactatattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1846057 1846062 . - . misc_feature unknown_1413 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 1846215 1846762 . - . mRNA SPCC1223.15c ; systematic_id "SPCC1223.15c" ; colour "2" ; gene "spc19 ||| SPCC1223.15c" ; Alias "spc19" ; db_xref "SPD:52/52E04" ; GO "GO:0042729; DASH complex
GO:0007052; mitotic spindle organization and biogenesis
GO:0031134; sister chromatid biorientation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR201W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "spc19" ; product "DASH complex subunit Spc19" ;
chromosome3 GeneDB CDS 1846215 1846613 . - . mRNA SPCC1223.15c ; colour "2" ;
chromosome3 GeneDB CDS 1846663 1846705 . - . mRNA SPCC1223.15c ; colour "2" ;
chromosome3 GeneDB CDS 1846746 1846762 . - . mRNA SPCC1223.15c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1847514 1847517 . - . mRNA SPCC1223.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1223.05c" ; systematic_id "SPCC1223.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1847518 1847853 . - . mRNA SPCC1223.05c ; systematic_id "SPCC1223.05c" ; colour "7" ; gene "rpl3702 ||| rpl37-2 ||| rpl37 ||| SPCC1223.05c" ; Alias "rpl3702" ; db_xref "SPD:01/01H11" ; synonym "rpl37-2 ||| rpl37" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0019843; rRNA binding
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR185W and YDR500C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl3702" ; product "60S ribosomal protein L37 (predicted)" ;
chromosome3 GeneDB CDS 1847518 1847558 . - . mRNA SPCC1223.05c ; colour "7" ;
chromosome3 GeneDB CDS 1847619 1847853 . - . mRNA SPCC1223.05c ; colour "7" ;
chromosome3 GeneDB misc_feature 1847559 1847577 . - . misc_feature unknown_1414 ; colour "6" ; note "ctaacaaaattttatttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1847559 1847618 . - . intron SPCC1223.05c ; systematic_id "SPCC1223.05c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1847613 1847618 . - . misc_feature unknown_1415 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1848891 1849017 . + . mRNA SPCC1223.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1223.06" ; systematic_id "SPCC1223.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1849018 1852461 . + . mRNA SPCC1223.06 ; systematic_id "SPCC1223.06" ; colour "2" ; gene "tea1 ||| alp8 ||| SPCC1223.06" ; Alias "tea1" ; db_xref "SPD:48/48C11" ; synonym "alp8" ; GO "GO:0031500; Tea1 cell-end complex
GO:0051285; cell cortex of cell tip
GO:0005875; microtubule associated complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0007163; establishment and/or maintenance of cell polarity
GO:0071775; regulation of cell cycle cytokinesis
GO: SF 30778546; positive regulation of establishment of cell polarity resulting in cell shape
GO:0010570; regulation of filamentous growth
GO:0007017; microtubule-based process" ; controlled_curation "term=phenotype, viable; cv=phenotype; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, branched; qualifier=deletion|low_penetrance; db_xref=PMID:8522609; date=20100731 ||| term=phenotype, cell morphology, curved; qualifier=deletion; db_xref=PMID:8522609; date=20100731 ||| term=phenotype, filament morphology aberrant; qualifier=deletion; db_xref=PMID:19542312; date=20090706 ||| term=name description, Tip Elongation Aberrant; cv=name_description; date=19700101 ||| term=kelch repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR158C and YGR238C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Shk1; qualifier=phosphorylated_by; db_xref=PMID:12764130; date=20100826" ; primary_name "tea1" ; product "cell end marker Tea1" ;
chromosome3 GeneDB CDS 1849018 1852461 . + . mRNA SPCC1223.06 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1852462 1852520 . + . mRNA SPCC1223.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1223.06" ; systematic_id "SPCC1223.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1852712 1854512 . - . mRNA SPCC1223.07c ; systematic_id "SPCC1223.07c" ; colour "7" ; gene "SPCC1223.07c ||| drs1" ; Alias "drs1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:45/45H07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; GO "GO:0006422; aspartyl-tRNA aminoacylation
GO:0004815; aspartate-tRNA ligase activity
GO:0005737; cytoplasm
GO:0005524; ATP binding" ; primary_name "drs1" ; product "cytoplasmic aspartate-tRNA ligase Drs1 (predicted)" ; EC_number "6.1.1.12" ;
chromosome3 GeneDB CDS 1852712 1854377 . - . mRNA SPCC1223.07c ; colour "7" ;
chromosome3 GeneDB CDS 1854436 1854512 . - . mRNA SPCC1223.07c ; colour "7" ;
chromosome3 GeneDB misc_feature 1854378 1854396 . - . misc_feature unknown_1416 ; colour "6" ; note "ctaaccatcacatttgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1854430 1854435 . - . misc_feature unknown_1417 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1855307 1855468 . + . mRNA SPCC1223.08c ; ID "SPCC1223.08c" ; systematic_id "SPCC1223.08c" ; note "mRNA from SPDFR1A" ;
chromosome3 GeneDB CDS_parts 1855469 1857056 . + . mRNA SPCC1223.08c ; systematic_id "SPCC1223.08c" ; colour "2" ; gene "dfr1 ||| SPCC1223.08c" ; note "SPCC1223.08 has DUF341 N-terminal domain which is absent from other orthologs, and more similar to S. pombe SPAC22A12.06c than S. cerevisiae DUF341 domain proteins" ; Alias "dfr1" ; db_xref "SPD:25/25E11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR236W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004146; dihydrofolate reductase activity
GO:0009165; nucleotide biosynthesis
GO:0006545; glycine biosynthesis
GO:0006760; folic acid and derivative metabolism
GO:0005829; cytosol" ; primary_name "dfr1" ; product "dihydrofolate reductase Dfr1" ; EC_number "1.5.1.3" ;
chromosome3 GeneDB CDS 1855469 1855502 . + . mRNA SPCC1223.08c ; colour "2" ;
chromosome3 GeneDB CDS 1855705 1857056 . + . mRNA SPCC1223.08c ; colour "2" ;
chromosome3 GeneDB misc_feature 1855503 1855508 . + . misc_feature unknown_1418 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 1855503 1855704 . + . intron SPCC1223.08c ; systematic_id "SPCC1223.08c" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1855685 1855704 . + . misc_feature unknown_1419 ; colour "6" ; note "ttaactcgtgtcctatgtag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 1857343 1858233 . - . mRNA SPCC1223.09 ; db_xref "SPD:12/12B05" ; systematic_id "SPCC1223.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004846; urate oxidase activity" ; gene "SPCC1223.09" ; product "uricase (predicted)" ; EC_number "1.7.3.3" ;
chromosome3 GeneDB CDS 1857343 1858233 . - . mRNA SPCC1223.09 ; colour "7" ;
chromosome3 GeneDB polyA_site 1860467 1860467 . - . mRNA SPCC1223.10c ; temporary_systematic_id "SPCC1223.10c" ; db_xref "EMBL:EF192607" ;
chromosome3 GeneDB 3'-UTR 1860467 1860766 . - . mRNA SPCC1223.10c ; ID "SPCC1223.10c" ; db_xref "EMBL:EF192607" ; systematic_id "SPCC1223.10c" ;
chromosome3 GeneDB CDS_parts 1860767 1861913 . - . mRNA SPCC1223.10c ; systematic_id "SPCC1223.10c" ; colour "2" ; gene "eaf1 ||| SPCC1223.10c" ; Alias "eaf1" ; db_xref "EMBL:EF192607 ||| SPD:16/16H03" ; GO "GO:0032783; ELL-EFF RNA elongation complex
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0005515; protein binding
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0032968; positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045944; positive regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17150956; date=20061212 ||| term=species distribution, no apparent S. cerevisiae ortholog; db_xref=PMID:17150956; date=20061212 ||| term=name description, ELL Associated Factor; cv=name_description; date=20061213 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:17150956; date=20090903" ; primary_name "eaf1" ; product "RNA polymerase II transcription elongation factor SpEAF" ;
chromosome3 GeneDB CDS 1860767 1861258 . - . mRNA SPCC1223.10c ; colour "2" ;
chromosome3 GeneDB CDS 1861383 1861469 . - . mRNA SPCC1223.10c ; colour "2" ;
chromosome3 GeneDB CDS 1861635 1861726 . - . mRNA SPCC1223.10c ; colour "2" ;
chromosome3 GeneDB CDS 1861829 1861913 . - . mRNA SPCC1223.10c ; colour "2" ;
chromosome3 GeneDB misc_feature 1861259 1861275 . - . misc_feature unknown_1420 ; colour "6" ; note "ctaacattaggcattag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1861260 1861382 . - . intron SPCC1223.10c ; db_xref "PMID:17150956" ; systematic_id "SPCC1223.10c" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 1861377 1861382 . - . misc_feature unknown_1421 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1861470 1861492 . - . misc_feature unknown_1422 ; colour "6" ; note "ctaatgtatatcttcattggtag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1861470 1861634 . - . intron SPCC1223.10c ; db_xref "PMID:17150956" ; systematic_id "SPCC1223.10c" ; note "confirmed" ;
chromosome3 GeneDB intron 1861727 1861828 . - . intron SPCC1223.10c ; db_xref "PMID:17150956" ; systematic_id "SPCC1223.10c" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 1861823 1861828 . - . misc_feature unknown_1423 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1861914 1861935 . - . mRNA SPCC1223.10c ; ID "SPCC1223.10c" ; db_xref "EMBL:EF192607" ; systematic_id "SPCC1223.10c" ;
chromosome3 GeneDB LTR 1862027 1862384 . - . LTR unknown_1424 ; colour "4" ; note "lone tf1-type LTR" ;
chromosome3 GeneDB tRNA 1863131 1863202 . + . tRNA SPCTRNAGLN.05 ; systematic_id "SPCTRNAGLN.05" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033404; TTG codon-amino acid adaptor activity" ; gene "SPCTRNAGLN.05" ; product "tRNA Glutamine" ; note "tRNA Gln anticodon TTG, Cove score 54.89" ;
chromosome3 GeneDB 5'-UTR 1863685 1863756 . + . mRNA SPCC1223.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1223.11" ; systematic_id "SPCC1223.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1863757 1864869 . + . mRNA SPCC1223.11 ; systematic_id "SPCC1223.11" ; colour "2" ; gene "ptc2 ||| SPCC1223.11" ; Alias "ptc2" ; db_xref "SPD:17/17E08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER089C and YBL056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Protein Phosphatase 2C homolog; date=20101124" ; GO "GO:0006470; protein amino acid dephosphorylation
GO:0006970; response to osmotic stress
GO:0004722; protein phosphatase type 2C activity
GO:0000173; inactivation of MAPK activity during osmolarity sensing
GO:0030968; unfolded protein response" ; primary_name "ptc2" ; product "protein phosphatase 2C Ptc2" ; EC_number "3.1.3.16" ;
chromosome3 GeneDB CDS 1863757 1864869 . + . mRNA SPCC1223.11 ; colour "2" ;
chromosome3 GeneDB misc_RNA 1865286 1866421 . + . misc_RNA SPNCRNA.586 ; obsolete_name "SPNCRNA.136" ; systematic_id "SPNCRNA.586" ; controlled_curation "term=; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; product "non-coding RNA (predicted)" ; note "putative RNA gene, corresponds to previous entry EMBL:AB001021 mRNA encoding 37 a.a. protein (largest ORF)" ;
chromosome3 GeneDB CDS_parts 1868480 1869730 . - . mRNA SPCC1223.12c ; systematic_id "SPCC1223.12c" ; colour "2" ; gene "meu10 ||| SPCC1223.12c" ; db_xref "SPD:20/20A01" ; Alias "meu10" ; GO "GO:0030476; fungal-type spore wall assembly
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100317 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR078W and YDR055W and YDR522C and YCL048W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104 ||| term=phenotype, sporulation defects; cv=phenotype; db_xref=PMID:20410137; date=20100426 ||| term=phenotype, cell morphology, snowman during sporulation; cv=phenotype; db_xref=PMID:20410137; date=20100426 ||| term=name description, Meiotic Expression Upregulated; date=20100605" ; primary_name "meu10" ; product "GPI anchored cell surface protein involved in ascospore wall assembly Meu10" ;
chromosome3 GeneDB CDS 1868480 1869730 . - . mRNA SPCC1223.12c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1871388 1871749 . + . mRNA SPCC1223.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1223.13" ; systematic_id "SPCC1223.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1871750 1874641 . + . mRNA SPCC1223.13 ; systematic_id "SPCC1223.13" ; colour "2" ; gene "SPCC1223.13" ; Alias "cbf12" ; db_xref "SPD:47/47D06" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016563; transcriptional activator activity
GO:0022409; positive regulation of cell-cell adhesion
GO:0010811; positive regulation of cell-substrate adhesion
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0032955; regulation of barrier septum formation
GO:0010590; regulation of cell separation during cytokinesis
GO:0051783; regulation of nuclear division" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe SPCC736.08; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, C promoter element Binding Factor; cv=name_description; date=20070712 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, cytokinesis defects; cv=phenotype; qualifier=overexpression; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, adhesion defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19101542; date=20090108 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:19101542; date=20090108 ||| term=gene expression, expressed during stationary phase; cv=gene_ex; db_xref=PMID:19101542; date=20090108 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; residue=S264; date=20100308" ; primary_name "cbf12" ; product "CBF1/Su(H)/LAG-1 family transcription factor Cbf12" ;
chromosome3 GeneDB CDS 1871750 1874641 . + . mRNA SPCC1223.13 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1874642 1875620 . + . mRNA SPCC1223.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1223.13" ; systematic_id "SPCC1223.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1876173 1876298 . + . mRNA SPCC1223.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1223.14" ; systematic_id "SPCC1223.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1876299 1877486 . + . mRNA SPCC1223.14 ; systematic_id "SPCC1223.14" ; colour "7" ; gene "SPCC1223.14 ||| SPCC297.01" ; db_xref "SPD:18/18H11" ; synonym "SPCC297.01" ; GO "GO:0004107; chorismate synthase activity
GO:0009073; aromatic amino acid family biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL148W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "chorismate synthase (predicted)" ; EC_number "4.2.3.5" ;
chromosome3 GeneDB CDS 1876299 1877486 . + . mRNA SPCC1223.14 ; colour "7" ;
chromosome3 GeneDB misc_feature 1876569 1876669 . + . misc_feature unknown_1425 ; note "nominal overlap with cosmid SPCC1223 and cosmid SPCC297" ;
chromosome3 GeneDB 3'-UTR 1877487 1877661 . + . mRNA SPCC1223.14 ; ID "SPCC1223.14" ; systematic_id "SPCC1223.14" ; note "mRNA from AU011006" ;
chromosome3 GeneDB misc_feature 1878192 1878470 . + . misc_feature unknown_1426 ; product "previouly SPCC297.02 dubious, unlikely to be protein coding" ;
chromosome3 GeneDB 5'-UTR 1878472 1878713 . + . mRNA SPCC297.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC297.03" ; systematic_id "SPCC297.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1878714 1880672 . + . mRNA SPCC297.03 ; systematic_id "SPCC297.03" ; colour "2" ; gene "ssp1 ||| SPCC297.03" ; Alias "ssp1" ; db_xref "SPD:27/27A11" ; GO "GO:0007163; establishment and/or maintenance of cell polarity
GO:0033554; cellular response to stress
GO:0005737; cytoplasm
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0034613; cellular protein localization
GO:0030042; actin filament depolymerization
GO:0051285; cell cortex of cell tip
GO:0030428; cell division site
GO:0004674; protein serine/threonine kinase activity
GO:0061161;
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0007165; signal transduction
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:7628434; date=20100705 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=orthologous to S. cerevisiae YGL179C and YER129W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CAMKK1 and CAMKK2 ortholog; date=20100908" ; primary_name "ssp1" ; product "serine/threonine protein kinase Ssp1" ;
chromosome3 GeneDB CDS 1878714 1880672 . + . mRNA SPCC297.03 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1880992 1881315 . - . mRNA SPCC297.04c ; ID "SPCC297.04c" ; systematic_id "SPCC297.04c" ; note "mRNA from AU010261" ;
chromosome3 GeneDB CDS_parts 1881316 1882072 . - . mRNA SPCC297.04c ; systematic_id "SPCC297.04c" ; colour "7" ; gene "set7 ||| SPCC297.04c" ; Alias "set7" ; db_xref "SPD:09/09C11" ; GO "GO:0018024; histone-lysine N-methyltransferase activity
GO:0016571; histone methylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20071106 ||| term=similar to U. maydis UM00758.01; date=20071106 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "set7" ; product "histone lysine methyltransferase Set7 (predicted)" ;
chromosome3 GeneDB CDS 1881316 1881726 . - . mRNA SPCC297.04c ; colour "7" ;
chromosome3 GeneDB CDS 1882040 1882072 . - . mRNA SPCC297.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 1881727 1881738 . - . misc_feature unknown_1427 ; colour "6" ; note "ctaacgctttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1881727 1882039 . - . intron SPCC297.04c ; systematic_id "SPCC297.04c" ; note "confirmed" ;
chromosome3 GeneDB misc_feature 1882034 1882039 . - . misc_feature unknown_1428 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1882073 1882276 . - . mRNA SPCC297.04c ; ID "SPCC297.04c" ; systematic_id "SPCC297.04c" ; note "mRNA from AU010340" ;
chromosome3 GeneDB 5'-UTR 1882495 1882767 . + . mRNA SPCC297.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC297.05" ; systematic_id "SPCC297.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1882768 1885689 . + . mRNA SPCC297.05 ; db_xref "SPD:47/47E05" ; systematic_id "SPCC297.05" ; colour "7" ; GO "GO:0019992; diacylglycerol binding
GO:0007165; signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C1 domain; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC297.05" ; product "diacylglycerol binding protein (predicted)" ;
chromosome3 GeneDB CDS 1882768 1885689 . + . mRNA SPCC297.05 ; colour "7" ;
chromosome3 GeneDB misc_feature 1885540 1885689 . + . misc_feature unknown_1429 ; note "SPCC297.05; see c297 for full-length CDS" ;
chromosome3 GeneDB misc_feature 1885540 1886103 . + . misc_feature unknown_1430 ; note "nominal overlap with cosmid SPCC737 and cosmid SPCC297" ;
chromosome3 GeneDB 3'-UTR 1885690 1885740 . + . mRNA SPCC297.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC297.05" ; systematic_id "SPCC297.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1885787 1885961 . - . mRNA SPCC297.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC297.06c" ; systematic_id "SPCC297.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1885962 1886654 . - . mRNA SPCC297.06c ; systematic_id "SPCC297.06c" ; colour "10" ; gene "SPCC297.06c ||| SPCC737.01c" ; note "was previously annotated as ribosomal protein based on SGD Mrp8, but there is no evidence for this assignment from experimentation or sequence similarity" ; db_xref "SPD:08/08B02" ; synonym "SPCC737.01c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YKL142W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 1885962 1886654 . - . mRNA SPCC297.06c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 1886653 1886855 . - . mRNA SPCC297.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC297.06c" ; systematic_id "SPCC297.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1887224 1887541 . - . mRNA SPCC737.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC737.02c" ; systematic_id "SPCC737.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1887542 1887955 . - . mRNA SPCC737.02c ; systematic_id "SPCC737.02c" ; colour "7" ; gene "qcr7 ||| SPCC737.02c" ; Alias "qcr7" ; db_xref "SPD:03/03C05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR529C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0017062; cytochrome bc(1) complex assembly
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c" ; primary_name "qcr7" ; product "ubiquinol-cytochrome-c reductase complex subunit 6 (predicted)" ; EC_number "1.10.2.2" ;
chromosome3 GeneDB CDS 1887542 1887955 . - . mRNA SPCC737.02c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1887954 1887995 . - . mRNA SPCC737.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC737.02c" ; systematic_id "SPCC737.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1888625 1890472 . - . mRNA SPCC737.03c ; systematic_id "SPCC737.03c" ; colour "2" ; gene "SPCC737.03c" ; Alias "ima1" ; db_xref "SPD:46/46A04" ; GO "GO:0005639; integral to nuclear inner membrane
GO:0034992; microtubule organizing center attachment site
GO:0005637; nuclear inner membrane
GO:0034994; microtubule organizing center attachment site organization
GO:0051313; attachment of spindle microtubules to chromosome
GO:0006997; nuclear organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Inner MTOC Attachment site; date=20100806" ; primary_name "ima1" ; product "integral inner nuclear membrane protein Ima1" ;
chromosome3 GeneDB CDS 1888625 1890472 . - . mRNA SPCC737.03c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1890471 1890747 . - . mRNA SPCC737.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC737.03c" ; systematic_id "SPCC737.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1892097 1893362 . + . mRNA SPCC737.04 ; db_xref "SPD:20/20C07" ; systematic_id "SPCC737.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "12" ; gene "SPCC737.04" ; product "S. pombe specific UPF0300 family protein 6" ;
chromosome3 GeneDB CDS 1892097 1893362 . + . mRNA SPCC737.04 ; colour "12" ;
chromosome3 GeneDB LTR 1894223 1894553 . + . LTR unknown_1431 ; colour "4" ; note "Tf2-type LTR" ;
chromosome3 GeneDB 5'-UTR 1895035 1895064 . + . mRNA SPCC737.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC737.05" ; systematic_id "SPCC737.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1895065 1895859 . + . mRNA SPCC737.05 ; systematic_id "SPCC737.05" ; colour "7" ; gene "SPCC737.05" ; note "There may be problems with this gene prediction, it appears to be N terminal truncated in comparision to the S. cerevisiae orthologs, although is proximal to N terminal LTR so may have been N-terminally truncated deleted" ; db_xref "SPD:10/10A10" ; GO "GO:0005778; peroxisomal membrane
GO:0007031; peroxisome organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR150W and YDR479C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "peroxin Pex28/29 (predicted)" ;
chromosome3 GeneDB CDS 1895065 1895859 . + . mRNA SPCC737.05 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1895860 1895971 . + . mRNA SPCC737.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC737.05" ; systematic_id "SPCC737.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1896025 1896273 . - . mRNA SPCC737.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC737.06c" ; systematic_id "SPCC737.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1896274 1897428 . - . mRNA SPCC737.06c ; systematic_id "SPCC737.06c" ; colour "7" ; gene "SPCC737.06c" ; note "glutamate-cysteine ligase catalytic subunit has EC 6.3.2.2" ; db_xref "SPD:18/18C07" ; GO "GO:0017109; glutamate-cysteine ligase complex
GO:0004033; aldo-keto reductase activity
GO:0030234; enzyme regulator activity
GO:0035226; glutamate-cysteine ligase catalytic subunit binding
GO:0035229; positive regulation of glutamate- cysteine ligase activity
GO:0006750; glutathione biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "glutamate-cysteine ligase regulatory subunit (predicted)" ;
chromosome3 GeneDB CDS 1896274 1896304 . - . mRNA SPCC737.06c ; colour "7" ;
chromosome3 GeneDB CDS 1896346 1896928 . - . mRNA SPCC737.06c ; colour "7" ;
chromosome3 GeneDB CDS 1897071 1897215 . - . mRNA SPCC737.06c ; colour "7" ;
chromosome3 GeneDB CDS 1897324 1897428 . - . mRNA SPCC737.06c ; colour "7" ;
chromosome3 GeneDB misc_feature 1896929 1896942 . - . misc_feature unknown_1432 ; colour "6" ; note "ctaactttgcgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1897065 1897070 . - . misc_feature unknown_1433 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1897216 1897230 . - . misc_feature unknown_1434 ; colour "6" ; note "ctaacatatttctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1897318 1897323 . - . misc_feature unknown_1435 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1897427 1897513 . - . mRNA SPCC737.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC737.06c" ; systematic_id "SPCC737.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1898061 1898150 . - . mRNA SPCC737.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC737.07c" ; systematic_id "SPCC737.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1898151 1900289 . - . mRNA SPCC737.07c ; db_xref "SPD:37/37E07" ; systematic_id "SPCC737.07c" ; colour "7" ; GO "GO:0006273; lagging strand elongation
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005658; alpha DNA polymerase:primase complex
GO:0004003; ATP-dependent DNA helicase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YKL017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC737.07c" ; product "DNA polymerase alpha-associated DNA helicase A (predicted)" ;
chromosome3 GeneDB CDS 1898151 1899681 . - . mRNA SPCC737.07c ; colour "7" ;
chromosome3 GeneDB CDS 1899733 1899969 . - . mRNA SPCC737.07c ; colour "7" ;
chromosome3 GeneDB CDS 1900028 1900200 . - . mRNA SPCC737.07c ; colour "7" ;
chromosome3 GeneDB CDS 1900248 1900289 . - . mRNA SPCC737.07c ; colour "7" ;
chromosome3 GeneDB misc_feature 1899682 1899696 . - . misc_feature unknown_1436 ; colour "6" ; note "ctgacagttgaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1899727 1899732 . - . misc_feature unknown_1437 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1899970 1899989 . - . misc_feature unknown_1438 ; colour "6" ; note "ttaactcatttaatttgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1900022 1900027 . - . misc_feature unknown_1439 ; colour "6" ; note "gtacat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1900201 1900214 . - . misc_feature unknown_1440 ; colour "6" ; note "ttaataatggtcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1900242 1900247 . - . misc_feature unknown_1441 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1900288 1900427 . - . mRNA SPCC737.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC737.07c" ; systematic_id "SPCC737.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1900480 1900503 . + . mRNA SPCC737.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC737.08" ; systematic_id "SPCC737.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1900504 1914657 . + . mRNA SPCC737.08 ; db_xref "SPD:50/50A03" ; systematic_id "SPCC737.08" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0005509; calcium ion binding
GO:0006364; rRNA processing
GO:0000027; ribosomal large subunit assembly and maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YLR106C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC737.08" ; product "midasin (predicted)" ;
chromosome3 GeneDB CDS 1900504 1914657 . + . mRNA SPCC737.08 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1914658 1914727 . + . mRNA SPCC737.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC737.08" ; systematic_id "SPCC737.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1914768 1914927 . - . mRNA SPCC737.09c ; Alias "hmt1" ; ID "SPCC737.09c" ; db_xref "EMBL:Z14055" ; systematic_id "SPCC737.09c" ; primary_name "hmt1" ;
chromosome3 GeneDB CDS_parts 1914928 1917542 . - . mRNA SPCC737.09c ; systematic_id "SPCC737.09c" ; colour "2" ; gene "hmt1 ||| SPCC737.09c ||| SPCC74.08c" ; Alias "hmt1" ; db_xref "SPD:47/47A02" ; synonym "SPCC74.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=ABC transporter family; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000329; vacuolar membrane
GO:0005524; ATP binding
GO:0042626; ATPase activity, coupled to transmembrane movement of substances
GO:0034634; glutathione transmembrane transporter activity
GO:0071276; cellular response to cadmium ion
GO:0071276; cellular response to cadmium ion
GO:0071996; glutathione import into vacuole
GO:0071995; phytochelatin import into vacuole" ; primary_name "hmt1" ; product "ATP-binding cassette-type vacuolar membrane transporter Hmt1" ;
chromosome3 GeneDB CDS 1914928 1917222 . - . mRNA SPCC737.09c ; colour "2" ;
chromosome3 GeneDB CDS 1917345 1917542 . - . mRNA SPCC737.09c ; colour "2" ;
chromosome3 GeneDB misc_feature 1916208 1916447 . + . misc_feature unknown_1442 ; note "nominal overlap with cosmid SPCC737 and cosmid SPCC74" ;
chromosome3 GeneDB misc_feature 1917223 1917238 . - . misc_feature unknown_1443 ; colour "6" ; note "ctaatttcatttttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1917223 1917344 . - . intron SPCC737.09c ; Alias "hmt1" ; db_xref "EMBL:Z14055" ; systematic_id "SPCC737.09c" ; primary_name "hmt1" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 1917339 1917344 . - . misc_feature unknown_1444 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1917543 1917648 . - . mRNA SPCC737.09c ; Alias "hmt1" ; ID "SPCC737.09c" ; db_xref "EMBL:Z14055" ; systematic_id "SPCC737.09c" ; primary_name "hmt1" ;
chromosome3 GeneDB misc_RNA 1917692 1918556 . + . misc_RNA SPNCRNA.505 ; db_xref "PMID:18488015" ; synonym "SPNG2522" ; systematic_id "SPNCRNA.505" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "check strand,warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 1919282 1921246 . + . mRNA SPCC74.09 ; systematic_id "SPCC74.09" ; colour "10" ; gene "SPCC74.09 ||| mug24" ; Alias "mug24" ; db_xref "SPD:37/37B05" ; GO "GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=related to S. pombe Nrd1 (paralog); date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug24" ; product "RNA-binding protein, rrm type" ;
chromosome3 GeneDB CDS 1919282 1921246 . + . mRNA SPCC74.09 ; colour "10" ;
chromosome3 GeneDB 5'-UTR 1923140 1923196 . + . mRNA SPCC74.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC74.01" ; systematic_id "SPCC74.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1923197 1925375 . + . mRNA SPCC74.01 ; systematic_id "SPCC74.01" ; colour "7" ; gene "sly1 ||| SPCC74.01" ; Alias "sly1" ; db_xref "SPD:46/46F05" ; GO "GO:0000149; SNARE binding
GO:0006904; vesicle docking during exocytosis
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sly1" ; product "SNARE binding protein Sly1 (predicted)" ;
chromosome3 GeneDB CDS 1923197 1923248 . + . mRNA SPCC74.01 ; colour "7" ;
chromosome3 GeneDB CDS 1923312 1923580 . + . mRNA SPCC74.01 ; colour "7" ;
chromosome3 GeneDB CDS 1923682 1924769 . + . mRNA SPCC74.01 ; colour "7" ;
chromosome3 GeneDB CDS 1924812 1924920 . + . mRNA SPCC74.01 ; colour "7" ;
chromosome3 GeneDB CDS 1924974 1925375 . + . mRNA SPCC74.01 ; colour "7" ;
chromosome3 GeneDB misc_feature 1923249 1923254 . + . misc_feature unknown_1445 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1923295 1923311 . + . misc_feature unknown_1446 ; colour "6" ; note "ctaatatgaacctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1923581 1923586 . + . misc_feature unknown_1447 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1923666 1923681 . + . misc_feature unknown_1448 ; colour "6" ; note "ctaacatattttaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1924770 1924775 . + . misc_feature unknown_1449 ; colour "6" ; note "gtatac, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1924801 1924811 . + . misc_feature unknown_1450 ; colour "6" ; note "ctaacttatattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1924921 1924926 . + . misc_feature unknown_1451 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1924960 1924973 . + . misc_feature unknown_1452 ; colour "6" ; note "ttaattgtttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1925376 1925397 . + . mRNA SPCC74.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC74.01" ; systematic_id "SPCC74.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1925505 1925745 . - . mRNA SPCC74.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC74.02c" ; systematic_id "SPCC74.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1925746 1928207 . - . mRNA SPCC74.02c ; db_xref "SPD:38/38D08" ; systematic_id "SPCC74.02c" ; colour "2" ; GO "GO:0005847; mRNA cleavage and polyadenylation specificity factor complex
GO:0006379; mRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; gene "SPCC74.02c" ; product "mRNA cleavage and polyadenylation specificity factor complex associated protein" ;
chromosome3 GeneDB CDS 1925746 1927417 . - . mRNA SPCC74.02c ; colour "2" ;
chromosome3 GeneDB CDS 1927469 1927679 . - . mRNA SPCC74.02c ; colour "2" ;
chromosome3 GeneDB CDS 1927800 1927880 . - . mRNA SPCC74.02c ; colour "2" ;
chromosome3 GeneDB CDS 1928039 1928207 . - . mRNA SPCC74.02c ; colour "2" ;
chromosome3 GeneDB misc_feature 1927418 1927434 . - . misc_feature unknown_1453 ; colour "6" ; note "ctaacgaagcgccttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1927418 1927468 . - . intron SPCC74.02c ; systematic_id "SPCC74.02c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1927463 1927468 . - . misc_feature unknown_1454 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1927680 1927695 . - . misc_feature unknown_1455 ; colour "6" ; note "ctaatatttatcttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1927794 1927799 . - . misc_feature unknown_1456 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1927881 1927897 . - . misc_feature unknown_1457 ; colour "6" ; note "ctaattgttgcccttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1928033 1928038 . - . misc_feature unknown_1458 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1928206 1928311 . - . mRNA SPCC74.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC74.02c" ; systematic_id "SPCC74.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1929190 1929816 . - . mRNA SPCC74.03c ; ID "SPCC74.03c" ; systematic_id "SPCC74.03c" ; note "mRNA from AU006682" ;
chromosome3 GeneDB CDS_parts 1929817 1931857 . - . mRNA SPCC74.03c ; systematic_id "SPCC74.03c" ; colour "2" ; db_xref "SPD:27/27F02" ; Alias "ssp2" ; synonym "ucp9" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR477W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0031593; polyubiquitin binding
GO:0046015; regulation of transcription by glucose
GO:0007165; signal transduction
GO:0017148; negative regulation of translation
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "ssp2" ; product "serine/threonine protein kinase Ssp2" ;
chromosome3 GeneDB CDS 1929817 1930814 . - . mRNA SPCC74.03c ; colour "2" ;
chromosome3 GeneDB CDS 1930865 1931216 . - . mRNA SPCC74.03c ; colour "2" ;
chromosome3 GeneDB CDS 1931425 1931657 . - . mRNA SPCC74.03c ; colour "2" ;
chromosome3 GeneDB CDS 1931710 1931857 . - . mRNA SPCC74.03c ; colour "2" ;
chromosome3 GeneDB misc_feature 1930815 1930828 . - . misc_feature unknown_1459 ; colour "6" ; note "ctaaacgtatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1930859 1930864 . - . misc_feature unknown_1460 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1931217 1931232 . - . misc_feature unknown_1461 ; colour "6" ; note "ctgactgtttttaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1931419 1931424 . - . misc_feature unknown_1462 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1931658 1931672 . - . misc_feature unknown_1463 ; colour "6" ; note "ctaacgtacttgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1931704 1931709 . - . misc_feature unknown_1464 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1931856 1931942 . - . mRNA SPCC74.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC74.03c" ; systematic_id "SPCC74.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 1932092 1933051 . + . misc_RNA SPNCRNA.506 ; db_xref "PMID:18488015" ; synonym "SPNG2525" ; systematic_id "SPNCRNA.506" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB repeat_region 1932774 1932923 . - . repeat_region unknown_1465 ; note "duplicated region associated with LTR" ;
chromosome3 GeneDB LTR 1933057 1933398 . - . LTR unknown_1466 ; colour "4" ; note "partially degraded Tf2-type LTR" ;
chromosome3 GeneDB misc_feature 1933399 1936829 . - . misc_feature unknown_1467 ; note "low complexity gene free region; (G-C)/(G+C) strand switch" ;
chromosome3 GeneDB misc_feature 1935450 1936331 . + . misc_feature unknown_1468 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG2527" ;
chromosome3 GeneDB 5'-UTR 1936728 1936829 . + . mRNA SPCC74.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC74.04" ; systematic_id "SPCC74.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1936830 1938503 . + . mRNA SPCC74.04 ; db_xref "SPD:35/35A11" ; systematic_id "SPCC74.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPCC74.04" ; product "amino acid permease (predicted)" ;
chromosome3 GeneDB CDS 1936830 1938503 . + . mRNA SPCC74.04 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1938504 1938706 . + . mRNA SPCC74.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC74.04" ; systematic_id "SPCC74.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 1938961 1939133 . + . misc_RNA SPNCRNA.508 ; db_xref "PMID:18488015" ; synonym "SPNG2529" ; systematic_id "SPNCRNA.508" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 1939257 1939264 . + . mRNA SPCC74.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC74.05" ; systematic_id "SPCC74.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1939265 1939744 . + . mRNA SPCC74.05 ; systematic_id "SPCC74.05" ; colour "7" ; gene "rpl2702 ||| rpl27-2 ||| SPCC74.05" ; Alias "rpl2702" ; db_xref "SPD:04/04D12" ; synonym "rpl27-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR010W and YDR471W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl2702" ; product "60S ribosomal protein L27 (predicted)" ;
chromosome3 GeneDB CDS 1939265 1939291 . + . mRNA SPCC74.05 ; colour "7" ;
chromosome3 GeneDB CDS 1939361 1939744 . + . mRNA SPCC74.05 ; colour "7" ;
chromosome3 GeneDB misc_feature 1939292 1939297 . + . misc_feature unknown_1469 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 1939292 1939360 . + . intron SPCC74.05 ; systematic_id "SPCC74.05" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1939345 1939360 . + . misc_feature unknown_1470 ; colour "6" ; note "ctaacgaaacgttcag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1939745 1939805 . + . mRNA SPCC74.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC74.05" ; systematic_id "SPCC74.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1940302 1940448 . + . mRNA SPCC74.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC74.06" ; systematic_id "SPCC74.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1940449 1947483 . + . mRNA SPCC74.06 ; systematic_id "SPCC74.06" ; colour "2" ; gene "mak3 ||| SPCC74.06 ||| phk2" ; Alias "mak3" ; db_xref "SPD:34/34C10" ; synonym "phk2" ; GO "GO:0000160; two-component signal transduction system (phosphorelay)
GO:0000155; two-component sensor activity
GO:0031137; regulation of conjugation with cellular fusion
GO:0007346; regulation of progression through mitotic cell cycle
GO:0034599; cellular response to oxidative stress
GO:0031098; stress-activated protein kinase signaling pathway
GO:0006468; protein amino acid phosphorylation
GO:0004673; protein histidine kinase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11758939; date=19700101 ||| term=PAC domain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Sty1; qualifier=phosphorylates; db_xref=PMID:17072883; date=20100820" ; primary_name "mak3" ; product "histidine kinase Mak3" ;
chromosome3 GeneDB CDS 1940449 1947483 . + . mRNA SPCC74.06 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1947484 1947736 . + . mRNA SPCC74.06 ; ID "SPCC74.06" ; systematic_id "SPCC74.06" ; note "mRNA from AU010612" ;
chromosome3 GeneDB 3'-UTR 1947837 1948577 . - . mRNA SPCC18.01c ; ID "SPCC18.01c" ; systematic_id "SPCC18.01c" ; note "mRNA from SPD125" ;
chromosome3 GeneDB misc_feature 1948572 1951844 . + . misc_feature unknown_1471 ; note "nominal overlap with cosmid SPCC18 and cosmid SPCC74" ;
chromosome3 GeneDB CDS_parts 1948578 1951973 . - . mRNA SPCC18.01c ; systematic_id "SPCC18.01c" ; colour "7" ; gene "adg3 ||| SPCC74.07c ||| SPCC18.01c" ; Alias "adg3" ; db_xref "SPD:30/30E01" ; synonym "SPCC74.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Ace2 Dependent Gene; db_xref=PMID:15689498; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15689498; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YMR244W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; GO "GO:0009986; cell surface
GO:0008422; beta-glucosidase activity
GO:0000920; cell separation during cytokinesis" ; primary_name "adg3" ; product "beta-glucosidase Adg3 (predicted)" ;
chromosome3 GeneDB CDS 1948578 1951973 . - . mRNA SPCC18.01c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1951972 1952180 . - . mRNA SPCC18.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.01c" ; systematic_id "SPCC18.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1953336 1953654 . + . mRNA SPCC18.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.02" ; systematic_id "SPCC18.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1953655 1955001 . + . mRNA SPCC18.02 ; db_xref "SPD:20/20H01" ; systematic_id "SPCC18.02" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0022857; transmembrane transporter activity
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; gene "SPCC18.02" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB CDS 1953655 1955001 . + . mRNA SPCC18.02 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1955002 1955372 . + . mRNA SPCC18.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.02" ; systematic_id "SPCC18.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1955756 1955763 . + . mRNA SPCC18.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.03" ; systematic_id "SPCC18.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1955764 1958997 . + . mRNA SPCC18.03 ; db_xref "SPD:48/48B02" ; systematic_id "SPCC18.03" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=zf-NF-X1 zinc finger; date=19700101 ||| term=orthologous to S. cerevisiae YNL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC18.03" ; product "shuttle craft like transcriptional regulator (predicted)" ;
chromosome3 GeneDB CDS 1955764 1958997 . + . mRNA SPCC18.03 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1958998 1959168 . + . mRNA SPCC18.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.03" ; systematic_id "SPCC18.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1960130 1962798 . + . mRNA SPCC18.04 ; systematic_id "SPCC18.04" ; colour "2" ; gene "pof6 ||| SPCC18.04" ; Alias "pof6" ; db_xref "SPD:38/38H05" ; GO "GO:0000935; barrier septum
GO:0051286; cell tip
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0033205; cell cycle cytokinesis
GO:0006897; endocytosis
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12511573; date=19700101 ||| term=orthologous to S. cerevisiae YJL204C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "pof6" ; product "F-box protein Pof6" ;
chromosome3 GeneDB CDS 1960130 1962477 . + . mRNA SPCC18.04 ; colour "2" ;
chromosome3 GeneDB CDS 1962528 1962798 . + . mRNA SPCC18.04 ; colour "2" ;
chromosome3 GeneDB misc_feature 1962478 1962483 . + . misc_feature unknown_1472 ; colour "6" ; note "gtgaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1962514 1962527 . + . misc_feature unknown_1473 ; colour "6" ; note "ctgactcattttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1962799 1962906 . + . mRNA SPCC18.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.04" ; systematic_id "SPCC18.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1963016 1963107 . - . mRNA SPCC18.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.05c" ; systematic_id "SPCC18.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1963108 1964774 . - . mRNA SPCC18.05c ; db_xref "SPD:34/34H09" ; systematic_id "SPCC18.05c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCR072C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC18.05c" ; product "notchless-like protein (predicted)" ;
chromosome3 GeneDB CDS 1963108 1963719 . - . mRNA SPCC18.05c ; colour "7" ;
chromosome3 GeneDB CDS 1963770 1964066 . - . mRNA SPCC18.05c ; colour "7" ;
chromosome3 GeneDB CDS 1964125 1964520 . - . mRNA SPCC18.05c ; colour "7" ;
chromosome3 GeneDB CDS 1964571 1964774 . - . mRNA SPCC18.05c ; colour "7" ;
chromosome3 GeneDB misc_feature 1963720 1963731 . - . misc_feature unknown_1474 ; colour "6" ; note "ctaattttgaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1963764 1963769 . - . misc_feature unknown_1475 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1964067 1964079 . - . misc_feature unknown_1476 ; colour "6" ; note "ctaatatttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1964119 1964124 . - . misc_feature unknown_1477 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1964521 1964538 . - . misc_feature unknown_1478 ; colour "6" ; note "ctaacataatcctcacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1964565 1964570 . - . misc_feature unknown_1479 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 1965492 1965838 . - . mRNA SPCC18.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.06c" ; systematic_id "SPCC18.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1965839 1966837 . - . mRNA SPCC18.06c ; systematic_id "SPCC18.06c" ; colour "2" ; gene "caf1 ||| pop2 ||| SPCC18.06c" ; Alias "caf1" ; db_xref "SPD:14/14F07" ; synonym "pop2" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030015; CCR4-NOT core complex
GO:0005737; cytoplasm
GO:0004535; poly(A)-specific ribonuclease activity
GO:0003729; mRNA binding
GO:0046872; metal ion binding
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0000289; poly(A) tail shortening
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "caf1" ; product "CCR4-Not complex CAF1 family ribonuclease subunit Caf1" ;
chromosome3 GeneDB CDS 1965839 1966837 . - . mRNA SPCC18.06c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1966836 1966868 . - . mRNA SPCC18.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.06c" ; systematic_id "SPCC18.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1966855 1967345 . - . mRNA SPCC18.19c ; systematic_id "SPCC18.19c" ; colour "7" ; obsolete_name "SPNCRNA.509 ||| SPNG2532" ; Alias "ost5" ; controlled_curation "term=warning, new gene; db_xref=PMID:18022010; cv=warning; date=20100218 ||| term=warning, gene structure may be incorrect; cv=warning; date=20100218 ||| term=orthologous to S. cerevisiae YGL226C-A; date=20100218 ||| term=species distribution, conserved in Eukaryotes; date=20100218 ||| term=species distribution, conserved in Fungi; date=20100218 ||| term=species distribution, conserved in Fungi only; date=20100218 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100218" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation
GO:0004579; dolichyl-diphosphooligosaccharide- protein glycotransferase activity" ; primary_name "ost5" ; product "oligosaccharyltransferase complex zeta subunit Ost5 (predicted)" ;
chromosome3 GeneDB CDS 1966855 1967033 . - . mRNA SPCC18.19c ; colour "7" ;
chromosome3 GeneDB CDS 1967184 1967246 . - . mRNA SPCC18.19c ; colour "7" ;
chromosome3 GeneDB CDS 1967303 1967345 . - . mRNA SPCC18.19c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1969067 1969336 . + . mRNA SPCC18.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.07" ; systematic_id "SPCC18.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1969337 1970329 . + . mRNA SPCC18.07 ; systematic_id "SPCC18.07" ; colour "7" ; gene "rpc53 ||| SPCC18.07" ; Alias "rpc53" ; db_xref "SPD:14/14E04" ; GO "GO:0006383; transcription from RNA polymerase III promoter
GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL150W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpc53" ; product "DNA-directed RNA polymerase III complex subunit Rpc53 (predicted)" ;
chromosome3 GeneDB CDS 1969337 1970329 . + . mRNA SPCC18.07 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1970330 1970443 . + . mRNA SPCC18.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.07" ; systematic_id "SPCC18.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1970883 1971016 . + . mRNA SPCC18.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.08" ; systematic_id "SPCC18.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1971017 1972612 . + . mRNA SPCC18.08 ; systematic_id "SPCC18.08" ; colour "7" ; gene "SPCC18.08" ; note "YNL073W is not the top Blast hit for SPCC18.08 (top hit YDR037W). However, the domain structure of SPCC18.08 corresponds better to YNL073W than YDR037W" ; db_xref "KEGG:MAP00300; ||| KEGG:MAP00970; ||| SPD:25/25F05" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004824; lysine-tRNA ligase activity
GO:0003676; nucleic acid binding
GO:0006430; lysyl-tRNA aminoacylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; product "mitochondrial lysine-tRNA ligase (predicted)" ;
chromosome3 GeneDB CDS 1971017 1972612 . + . mRNA SPCC18.08 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 1972613 1972643 . + . mRNA SPCC18.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.08" ; systematic_id "SPCC18.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1972750 1972756 . - . mRNA SPCC18.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.09c" ; systematic_id "SPCC18.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1972757 1973690 . - . mRNA SPCC18.09c ; db_xref "SPD:13/13A12" ; systematic_id "SPCC18.09c" ; colour "7" ; GO "GO:0000166; nucleotide binding
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0016787; hydrolase activity
GO:0006281; DNA repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HIT family; date=19700101 ||| term=orthologous to S. cerevisiae YOR258W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC18.09c" ; product "human aprataxin homolog, involved in DNA repair (predicted)" ;
chromosome3 GeneDB CDS 1972757 1973427 . - . mRNA SPCC18.09c ; colour "7" ;
chromosome3 GeneDB CDS 1973663 1973690 . - . mRNA SPCC18.09c ; colour "7" ;
chromosome3 GeneDB misc_feature 1973428 1973447 . - . misc_feature unknown_1480 ; colour "6" ; note "ctaatcttgtttttgcatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1973657 1973662 . - . misc_feature unknown_1481 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1973689 1973795 . - . mRNA SPCC18.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.09c" ; systematic_id "SPCC18.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1974677 1974770 . + . mRNA SPCC18.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.10" ; systematic_id "SPCC18.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1974771 1976071 . + . mRNA SPCC18.10 ; db_xref "SPD:22/22F02" ; systematic_id "SPCC18.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR027W and YEL029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC18.10" ; product "pyridoxine-pyridoxal-pyridoxamine kinase (predicted)" ; EC_number "2.7.1.35" ;
chromosome3 GeneDB CDS 1974771 1974824 . + . mRNA SPCC18.10 ; colour "7" ;
chromosome3 GeneDB CDS 1974870 1974978 . + . mRNA SPCC18.10 ; colour "7" ;
chromosome3 GeneDB CDS 1975121 1975427 . + . mRNA SPCC18.10 ; colour "7" ;
chromosome3 GeneDB CDS 1975519 1976071 . + . mRNA SPCC18.10 ; colour "7" ;
chromosome3 GeneDB misc_feature 1974825 1974830 . + . misc_feature unknown_1482 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1974854 1974869 . + . misc_feature unknown_1483 ; colour "6" ; note "ctcacaattccaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1974979 1974984 . + . misc_feature unknown_1484 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1975105 1975120 . + . misc_feature unknown_1485 ; colour "6" ; note "ctaaccgaatgaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1975428 1975433 . + . misc_feature unknown_1486 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1975502 1975518 . + . misc_feature unknown_1487 ; colour "6" ; note "ctaacagtctctcatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1975555 1976022 . - . mRNA SPCC18.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.11c" ; systematic_id "SPCC18.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1976023 1976436 . - . mRNA SPCC18.11c ; systematic_id "SPCC18.11c" ; colour "2" ; gene "sdc1 ||| SPCC18.11c" ; Alias "sdc1" ; db_xref "SPD:03/03C06" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0016571; histone methylation
GO:0048189; Lid2 complex
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=orthologous to S. cerevisiae YDR469W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sdc1" ; product "Dpy-30 domain protein Sdc1" ;
chromosome3 GeneDB CDS 1976023 1976263 . - . mRNA SPCC18.11c ; colour "2" ;
chromosome3 GeneDB CDS 1976348 1976436 . - . mRNA SPCC18.11c ; colour "2" ;
chromosome3 GeneDB 3'-UTR 1976072 1976491 . + . mRNA SPCC18.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.10" ; systematic_id "SPCC18.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 1976264 1976279 . - . misc_feature unknown_1488 ; colour "6" ; note "ctaactgatggaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1976342 1976347 . - . misc_feature unknown_1489 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1976435 1976655 . - . mRNA SPCC18.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.11c" ; systematic_id "SPCC18.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1977207 1977222 . - . mRNA SPCC18.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.12c" ; systematic_id "SPCC18.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1977223 1978301 . - . mRNA SPCC18.12c ; db_xref "SPD:16/16G01" ; systematic_id "SPCC18.12c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=PINc domain; date=20091004" ; gene "SPCC18.12c" ; product "rRNA processing protein (predicted)" ;
chromosome3 GeneDB CDS 1977223 1977827 . - . mRNA SPCC18.12c ; colour "7" ;
chromosome3 GeneDB CDS 1978012 1978101 . - . mRNA SPCC18.12c ; colour "7" ;
chromosome3 GeneDB CDS 1978214 1978301 . - . mRNA SPCC18.12c ; colour "7" ;
chromosome3 GeneDB misc_feature 1977828 1977841 . - . misc_feature unknown_1490 ; colour "6" ; note "ctaactgactatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1978006 1978011 . - . misc_feature unknown_1491 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1978102 1978117 . - . misc_feature unknown_1492 ; colour "6" ; note "ctaacatgatttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1978208 1978213 . - . misc_feature unknown_1493 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1978300 1978528 . - . mRNA SPCC18.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.12c" ; systematic_id "SPCC18.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 1978526 1978894 . + . mRNA SPCC18.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.13" ; systematic_id "SPCC18.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1978895 1980233 . + . mRNA SPCC18.13 ; db_xref "SPD:20/20G02" ; systematic_id "SPCC18.13" ; colour "7" ; GO "GO:0005634; nucleus
GO:0043234; protein complex
GO:0030488; tRNA methylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR165W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC18.13" ; product "tRNA (guanine-N7-)-methyltransferase subunit Trm82 (predicted)" ;
chromosome3 GeneDB CDS 1978895 1979574 . + . mRNA SPCC18.13 ; colour "7" ;
chromosome3 GeneDB CDS 1979648 1980233 . + . mRNA SPCC18.13 ; colour "7" ;
chromosome3 GeneDB misc_feature 1979575 1979580 . + . misc_feature unknown_1494 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1979631 1979647 . + . misc_feature unknown_1495 ; colour "6" ; note "ctaacgccttttcctag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1980234 1980286 . + . mRNA SPCC18.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.13" ; systematic_id "SPCC18.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1980617 1980628 . - . mRNA SPCC18.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.14c" ; systematic_id "SPCC18.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1980629 1981891 . - . mRNA SPCC18.14c ; systematic_id "SPCC18.14c" ; colour "7" ; gene "rpp0 ||| SPCC18.14c" ; db_xref "SPD:20/20B11" ; Alias "rpp0" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR340W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpp0" ; product "60S acidic ribosomal protein Rpp0 (predicted)" ;
chromosome3 GeneDB CDS 1980629 1980781 . - . mRNA SPCC18.14c ; colour "7" ;
chromosome3 GeneDB CDS 1981106 1981891 . - . mRNA SPCC18.14c ; colour "7" ;
chromosome3 GeneDB misc_feature 1980782 1980796 . - . misc_feature unknown_1496 ; colour "6" ; note "ctaactttattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 1981100 1981105 . - . misc_feature unknown_1497 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1983366 1983371 . + . mRNA SPCC18.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.15" ; systematic_id "SPCC18.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1983372 1984882 . + . mRNA SPCC18.15 ; db_xref "SPD:24/24E02" ; systematic_id "SPCC18.15" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR246W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human WDR85 ortholog; date=20100728" ; GO "GO:0006360; transcription from RNA polymerase I promoter" ; gene "SPCC18.15" ; product "WD repeat protein, human WDR85 family, implicated in rRNA transcription" ;
chromosome3 GeneDB CDS 1983372 1983547 . + . mRNA SPCC18.15 ; colour "10" ;
chromosome3 GeneDB CDS 1984126 1984882 . + . mRNA SPCC18.15 ; colour "10" ;
chromosome3 GeneDB misc_feature 1983548 1983553 . + . misc_feature unknown_1498 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1984110 1984125 . + . misc_feature unknown_1499 ; colour "6" ; note "ctaattcatcttatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1984883 1985181 . + . mRNA SPCC18.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.15" ; systematic_id "SPCC18.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1985403 1985450 . - . mRNA SPCC18.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.16c" ; systematic_id "SPCC18.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1985451 1985942 . - . mRNA SPCC18.16c ; systematic_id "SPCC18.16c" ; colour "2" ; gene "fmn1 ||| SPCC18.16c" ; Alias "fmn1" ; db_xref "SPD:04/04G03" ; GO "GO:0008531; riboflavin kinase activity
GO:0009398; FMN biosynthesis
GO:0046443; FAD metabolism
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR236C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fmn1" ; product "riboflavin kinase Fmn1" ;
chromosome3 GeneDB CDS 1985451 1985942 . - . mRNA SPCC18.16c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 1985941 1985951 . - . mRNA SPCC18.16c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.16c" ; systematic_id "SPCC18.16c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1986390 1986672 . - . mRNA SPCC18.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.17c" ; systematic_id "SPCC18.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1986673 1988139 . - . mRNA SPCC18.17c ; db_xref "SPD:23/23F04" ; systematic_id "SPCC18.17c" ; colour "7" ; GO "GO:0000502; proteasome complex
GO:0031145; anaphase-promotong complex proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human PSMD5 ortholog; date=20091106 ||| term=species distribution, conserved in Eukaryotes; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20091106 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100805" ; gene "SPCC18.17c" ; product "26S proteasome non-ATPase regulatory subunit (predicted)" ;
chromosome3 GeneDB CDS 1986673 1988139 . - . mRNA SPCC18.17c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 1988138 1988150 . - . mRNA SPCC18.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC18.17c" ; systematic_id "SPCC18.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1988631 1990722 . - . mRNA SPCC18.18c ; systematic_id "SPCC18.18c" ; colour "7" ; gene "fum1 ||| SPCC18.18c ||| SPCC290.01c" ; Alias "fum1" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00720; ||| SPD:23/23D04" ; synonym "SPCC290.01c" ; GO "GO:0006106; fumarate metabolism
GO:0006099; tricarboxylic acid cycle
GO:0004333; fumarate hydratase activity
GO:0005759; mitochondrial matrix
GO:0005829; cytosol" ; controlled_curation "term=disease associated, hereditary leiomyomatosis; date=20060920 ||| term=disease associated, renal cell cancer; date=20060920 ||| term=orthologous to S. cerevisiae YPL262W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20091113" ; primary_name "fum1" ; product "fumarate hydratase (predicted)" ; EC_number "4.2.1.2" ;
chromosome3 GeneDB CDS 1988631 1990100 . - . mRNA SPCC18.18c ; colour "7" ;
chromosome3 GeneDB CDS 1990630 1990722 . - . mRNA SPCC18.18c ; colour "7" ;
chromosome3 GeneDB misc_feature 1988802 1988876 . + . misc_feature unknown_1500 ; note "nominal overlap with cosmid SPCC290 and cosmid SPCC18" ;
chromosome3 GeneDB intron 1990101 1990629 . - . intron SPCC18.18c ; db_xref "PMID:18488015" ; systematic_id "SPCC18.18c" ;
chromosome3 GeneDB 5'-UTR 1990723 1991055 . - . mRNA SPCC18.18c ; ID "SPCC18.18c" ; db_xref "PMID:18488015" ; systematic_id "SPCC18.18c" ; note "From Solexa transcript SPNG2537" ;
chromosome3 GeneDB 5'-UTR 1992605 1992765 . + . mRNA SPCC290.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC290.02" ; systematic_id "SPCC290.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1992766 1993845 . + . mRNA SPCC290.02 ; systematic_id "SPCC290.02" ; colour "7" ; gene "rpc34 ||| SPCC290.02" ; Alias "rpc34" ; db_xref "SPD:16/16G10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006383; transcription from RNA polymerase III promoter" ; primary_name "rpc34" ; product "DNA-directed RNA polymerase III complex subunit Rpc34 (predicted)" ; EC_number "2.7.7.6" ;
chromosome3 GeneDB CDS 1992766 1993001 . + . mRNA SPCC290.02 ; colour "7" ;
chromosome3 GeneDB CDS 1993176 1993845 . + . mRNA SPCC290.02 ; colour "7" ;
chromosome3 GeneDB misc_feature 1993002 1993007 . + . misc_feature unknown_1501 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 1993157 1993175 . + . misc_feature unknown_1502 ; colour "6" ; note "ctaacattcttctttttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 1993846 1994035 . + . mRNA SPCC290.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC290.02" ; systematic_id "SPCC290.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 1994202 1994321 . - . mRNA SPCC290.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC290.03c" ; systematic_id "SPCC290.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 1994322 1999316 . - . mRNA SPCC290.03c ; systematic_id "SPCC290.03c" ; colour "2" ; gene "nup186 ||| SPCC290.03c" ; Alias "nup186" ; db_xref "SPD:31/31A09" ; GO "GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0051301; cell division
GO:0006913; nucleocytoplasmic transport
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:15116432; date=20100729 ||| term=orthologous to S. cerevisiae YJL039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nup186" ; product "nucleoporin Nup186" ;
chromosome3 GeneDB CDS 1994322 1994581 . - . mRNA SPCC290.03c ; colour "2" ;
chromosome3 GeneDB CDS 1994633 1999316 . - . mRNA SPCC290.03c ; colour "2" ;
chromosome3 GeneDB misc_feature 1994582 1994596 . - . misc_feature unknown_1503 ; colour "6" ; note "ctaatcgcaatttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 1994582 1994632 . - . intron SPCC290.03c ; systematic_id "SPCC290.03c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 1994627 1994632 . - . misc_feature unknown_1504 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 1999315 1999428 . - . mRNA SPCC290.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC290.03c" ; systematic_id "SPCC290.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2001186 2001291 . + . mRNA SPCC290.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC290.04" ; systematic_id "SPCC290.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2001292 2003482 . + . mRNA SPCC290.04 ; systematic_id "SPCC290.04" ; colour "2" ; gene "ams2 ||| SPCC290.04 ||| SPCC4F11.01" ; Alias "ams2" ; db_xref "SPD:40/40H03" ; synonym "SPCC4F11.01" ; GO "GO:0000775; chromosome, pericentric region
GO:0019237; centromeric DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000070; mitotic sister chromatid segregation
GO:0034613; cellular protein localization
GO:0034080; DNA replication-independent nucleosome assembly at centromere
GO:0000790; nuclear chromatin" ; controlled_curation "term=gene expression, expression cell cycle regulated; db_xref=PMID:12535531; cv=gene_ex; date=20050415 ||| term=zinc finger protein; date=19700101 ||| term=zf-GATA type; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12535531; date=19700101 ||| term=orthologous to S. cerevisiae YJL110C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "ams2" ; product "cell cycle regulated GATA-type transcription factor Ams2" ;
chromosome3 GeneDB CDS 2001292 2001331 . + . mRNA SPCC290.04 ; colour "2" ;
chromosome3 GeneDB CDS 2001429 2003482 . + . mRNA SPCC290.04 ; colour "2" ;
chromosome3 GeneDB misc_feature 2001348 2001452 . + . misc_feature unknown_1505 ; note "nominal overlap with cosmid SPCC4F11 and cosmid SPCC290" ;
chromosome3 GeneDB misc_feature 2001408 2001428 . + . misc_feature unknown_1506 ; colour "6" ; note "ctaatgtttgtctgtgtttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2003483 2004268 . + . mRNA SPCC290.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC290.04" ; systematic_id "SPCC290.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2004552 2004678 . + . mRNA SPCC4F11.02 ; ID "SPCC4F11.02" ; systematic_id "SPCC4F11.02" ; note "mRNA from SPPTC1X" ;
chromosome3 GeneDB CDS_parts 2004679 2005722 . + . mRNA SPCC4F11.02 ; systematic_id "SPCC4F11.02" ; colour "2" ; gene "ptc1 ||| SPCC4F11.02" ; Alias "ptc1" ; db_xref "SPD:15/15H03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Protein Phosphatase 2C homolog; date=20101124" ; GO "GO:0006470; protein amino acid dephosphorylation
GO:0034605; cellular response to heat
GO:0004722; protein phosphatase type 2C activity
GO:0000173; inactivation of MAPK activity during osmolarity sensing" ; primary_name "ptc1" ; product "protein phosphatase 2C Ptc1" ; EC_number "3.1.3.16" ;
chromosome3 GeneDB CDS 2004679 2005722 . + . mRNA SPCC4F11.02 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 2005723 2006392 . + . mRNA SPCC4F11.02 ; ID "SPCC4F11.02" ; systematic_id "SPCC4F11.02" ; note "mRNA from SPPTC1X" ;
chromosome3 GeneDB 3'-UTR 2006651 2006731 . - . mRNA SPCC4F11.03c ; ID "SPCC4F11.03c" ; systematic_id "SPCC4F11.03c" ; note "mRNA from SPD233" ;
chromosome3 GeneDB CDS_parts 2006732 2007739 . - . mRNA SPCC4F11.03c ; db_xref "SPD:14/14H10" ; systematic_id "SPCC4F11.03c" ; colour "8" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPCC4F11.03c" ; product "sequence orphan" ; note "shows similar to FG repeat units of GLFG family of nucleoporins ||| possible alternative in frame intron at 5894..5962, does not improve homology" ;
chromosome3 GeneDB CDS 2006732 2007739 . - . mRNA SPCC4F11.03c ; colour "8" ;
chromosome3 GeneDB 5'-UTR 2007740 2008106 . - . mRNA SPCC4F11.03c ; ID "SPCC4F11.03c" ; systematic_id "SPCC4F11.03c" ; note "mRNA from SPD233" ;
chromosome3 GeneDB CDS_parts 2008159 2009196 . - . mRNA SPCC4F11.04c ; systematic_id "SPCC4F11.04c" ; colour "2" ; gene "SPCC4F11.04c" ; Alias "imt2" ; db_xref "SPD:15/15G04" ; GO "GO:0000030; mannosyltransferase activity
GO:0006688; glycosphingolipid biosynthesis
GO:0031501; mannosyltransferase complex
GO:0051999; mannose inositol phosphoceramide biosynthetic process
GO:0006675; mannose inositol phosphoceramide metabolic process
GO:0033106; cis-Golgi network membrane
GO:0032588; trans-Golgi network membrane
GO:0006897; endocytosis
GO:0007038; endocytosed protein transport to vacuole" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, pear shaped; db_xref=PMID:20388730; date=20100622 ||| term=phenotype, viable; qualifier=deletion; cv=phenotype; db_xref=PMID:20388730; date=20100622 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR161W and YPL057C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Ipc Mannosyl- Transferase homologue; db_xref=PMID:20388730; date=20100622 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Fungi only; date=20100827" ; primary_name "imt2" ; product "mannosyltransferase Imt2" ;
chromosome3 GeneDB CDS 2008159 2009196 . - . mRNA SPCC4F11.04c ; colour "2" ;
chromosome3 GeneDB misc_RNA 2009624 2010229 . - . misc_RNA SPNCRNA.587 ; systematic_id "SPNCRNA.587" ; gene "meu20 ||| prl30 ||| SPNCRNA.30" ; obsolete_name "SPNCRNA.30" ; db_xref "EMBL:AB084842 ||| PMID:12597277" ; Alias "meu20" ; synonym "prl30" ; controlled_curation "term=name description, Meiotic Expression Upregulated; cv=name_description; qualifier=predicted; db_xref=EMBL:AB084842; date=20050412 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100317 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "meu20" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB misc_RNA 2010261 2010800 . - . misc_RNA SPNCRNA.585 ; obsolete_name "SPNCRNA.124" ; systematic_id "SPNCRNA.585" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; db_xref=PMID:12597277; date=20050412" ; gene "SPNCRNA.585" ; product "non-coding RNA (predicted)" ; note "mRNA from spc02023, possibly an extension of meu20 (same signal on microarray); correct strand ||| microarray expression profile on this strand (pers comm. Jurg Bahler)" ;
chromosome3 GeneDB 5'-UTR 2010426 2010501 . + . mRNA SPCC4F11.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC4F11.05" ; systematic_id "SPCC4F11.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2010502 2010789 . + . mRNA SPCC4F11.05 ; db_xref "SPD:01/01D01" ; systematic_id "SPCC4F11.05" ; controlled_curation "term=warning, below 100 amino acid size threshold; cv=warning; date=19700101" ; colour "6" ; gene "SPCC4F11.05" ; product "dubious" ;
chromosome3 GeneDB CDS 2010502 2010601 . + . mRNA SPCC4F11.05 ; colour "6" ;
chromosome3 GeneDB CDS 2010647 2010789 . + . mRNA SPCC4F11.05 ; colour "6" ;
chromosome3 GeneDB misc_RNA 2011061 2012433 . + . misc_RNA SPNCRNA.511 ; db_xref "PMID:18488015" ; synonym "SPNG2542" ; systematic_id "SPNCRNA.511" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB misc_feature 2011574 2011725 . + . misc_feature unknown_1507 ; note "nominal overlap with cosmid SPCC4F11 and cosmid SPCC1906" ;
chromosome3 GeneDB 5'-UTR 2012545 2012613 . + . mRNA SPCC1906.01 ; ID "SPCC1906.01" ; systematic_id "SPCC1906.01" ; note "mRNA from SPD128" ;
chromosome3 GeneDB intron 2012614 2012829 . + . intron unknown_1508 ; note "confirmed intron" ;
chromosome3 GeneDB CDS_parts 2012842 2013933 . + . mRNA SPCC1906.01 ; systematic_id "SPCC1906.01" ; colour "2" ; gene "mpg1 ||| SPCC1906.01" ; note "deletion mutant results in G2/M arrest (cell size checkpoint) activation mediated be Wee1" ; Alias "mpg1" ; db_xref "SPD:17/17B05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16049679; date=19700101 ||| term=orthologous to S. cerevisiae YDL055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004475; mannose-1-phosphate guanylyltransferase activity
GO:0009298; GDP-mannose biosynthesis
GO:0000032; cell wall mannoprotein biosynthesis
GO:0006486; protein amino acid glycosylation
GO:0005737; cytoplasm
GO:0051286; cell tip
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0031567; cell size control checkpoint" ; primary_name "mpg1" ; product "mannose-1-phosphate guanyltransferase Mpg1" ; EC_number "2.7.7.13" ;
chromosome3 GeneDB CDS 2012842 2013933 . + . mRNA SPCC1906.01 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 2013934 2014000 . + . mRNA SPCC1906.01 ; ID "SPCC1906.01" ; systematic_id "SPCC1906.01" ; note "mRNA from SPD128" ;
chromosome3 GeneDB CDS_parts 2014833 2016578 . - . mRNA SPCC1906.02c ; db_xref "SPD:36/36A02" ; systematic_id "SPCC1906.02c" ; colour "7" ; GO "GO:0043130; ubiquitin binding
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CUE domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL110C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1906.02c" ; product "CUE domain protein Cue3 (predicted)" ;
chromosome3 GeneDB CDS 2014833 2016578 . - . mRNA SPCC1906.02c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2016577 2016585 . - . mRNA SPCC1906.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1906.02c" ; systematic_id "SPCC1906.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2017004 2017345 . - . LTR unknown_1509 ; colour "4" ; note "tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 2017717 2019288 . + . mRNA SPCC1906.03 ; systematic_id "SPCC1906.03" ; colour "12" ; gene "SPCC1906.03 ||| wtf19" ; db_xref "SPD:45/45B08" ; Alias "wtf19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf19" ; product "wtf element Wtf19" ;
chromosome3 GeneDB CDS 2017717 2017852 . + . mRNA SPCC1906.03 ; colour "12" ;
chromosome3 GeneDB CDS 2018068 2018397 . + . mRNA SPCC1906.03 ; colour "12" ;
chromosome3 GeneDB CDS 2018447 2018824 . + . mRNA SPCC1906.03 ; colour "12" ;
chromosome3 GeneDB CDS 2018861 2019052 . + . mRNA SPCC1906.03 ; colour "12" ;
chromosome3 GeneDB CDS 2019093 2019155 . + . mRNA SPCC1906.03 ; colour "12" ;
chromosome3 GeneDB CDS 2019206 2019288 . + . mRNA SPCC1906.03 ; colour "12" ;
chromosome3 GeneDB misc_feature 2017853 2017858 . + . misc_feature unknown_1510 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2018056 2018067 . + . misc_feature unknown_1511 ; colour "6" ; note "ctaacaatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2018398 2018403 . + . misc_feature unknown_1512 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 2018398 2018446 . + . intron SPCC1906.03 ; systematic_id "SPCC1906.03" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2018435 2018446 . + . misc_feature unknown_1513 ; colour "6" ; note "ctaactcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2018825 2018830 . + . misc_feature unknown_1514 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 2018825 2018860 . + . intron SPCC1906.03 ; systematic_id "SPCC1906.03" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2018850 2018860 . + . misc_feature unknown_1515 ; colour "6" ; note "ctgacaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2019053 2019058 . + . misc_feature unknown_1516 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome3 GeneDB intron 2019053 2019092 . + . intron SPCC1906.03 ; systematic_id "SPCC1906.03" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2019080 2019092 . + . misc_feature unknown_1517 ; colour "6" ; note "ctaaccatgccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2019156 2019161 . + . misc_feature unknown_1518 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB intron 2019156 2019205 . + . intron SPCC1906.03 ; systematic_id "SPCC1906.03" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2019193 2019205 . + . misc_feature unknown_1519 ; colour "6" ; note "cttacccgattag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 2020201 2021357 . + . mRNA SPCC1906.04 ; Alias "wtf20" ; systematic_id "SPCC1906.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; colour "12" ; gene "wtf20 ||| SPCC1906.04" ; primary_name "wtf20" ; product "wtf element Wtf20" ;
chromosome3 GeneDB CDS 2020201 2020339 . + . mRNA SPCC1906.04 ; colour "12" ;
chromosome3 GeneDB CDS 2020578 2020850 . + . mRNA SPCC1906.04 ; colour "12" ;
chromosome3 GeneDB CDS 2020899 2021132 . + . mRNA SPCC1906.04 ; colour "12" ;
chromosome3 GeneDB CDS 2021173 2021226 . + . mRNA SPCC1906.04 ; colour "12" ;
chromosome3 GeneDB CDS 2021281 2021357 . + . mRNA SPCC1906.04 ; colour "12" ;
chromosome3 GeneDB misc_feature 2020340 2020345 . + . misc_feature unknown_1520 ; colour "6" ; note "gtaaga, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2020562 2020577 . + . misc_feature unknown_1521 ; colour "6" ; note "ctaactataaatgcag, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2020851 2020856 . + . misc_feature unknown_1522 ; colour "6" ; note "gtaagc, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2020887 2020898 . + . misc_feature unknown_1523 ; colour "6" ; note "ctaactcatcag, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2021133 2021138 . + . misc_feature unknown_1524 ; colour "6" ; note "gtttgt, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2021161 2021172 . + . misc_feature unknown_1525 ; colour "6" ; note "ctaacgatatag, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2021227 2021232 . + . misc_feature unknown_1526 ; colour "6" ; note "gtaaat, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2021267 2021280 . + . misc_feature unknown_1527 ; colour "6" ; note "ctaatcatcattag, splice donor sequence" ;
chromosome3 GeneDB LTR 2021939 2022290 . - . LTR unknown_1528 ; colour "4" ; note "tf2-type LTR" ;
chromosome3 GeneDB 5'-UTR 2024451 2025578 . + . mRNA SPCC1739.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.01" ; systematic_id "SPCC1739.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2025579 2027330 . + . mRNA SPCC1739.01 ; systematic_id "SPCC1739.01" ; colour "10" ; gene "SPCC1906.05 ||| SPCC1739.01" ; Alias "SPCC1906.05" ; db_xref "SPD:36/36A10" ; synonym "SPCC1906.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YPL054W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPCC1906.05" ; product "zf-CCCH type zinc finger protein" ;
chromosome3 GeneDB CDS 2025579 2025699 . + . mRNA SPCC1739.01 ; colour "10" ;
chromosome3 GeneDB CDS 2025808 2027330 . + . mRNA SPCC1739.01 ; colour "10" ;
chromosome3 GeneDB misc_feature 2025700 2025705 . + . misc_feature unknown_1529 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2025793 2025807 . + . misc_feature unknown_1530 ; colour "6" ; note "ctaactttgatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2026644 2026825 . + . misc_feature unknown_1531 ; note "nominal overlap with cosmid SPCC1739 and cosmid SPCC1906" ;
chromosome3 GeneDB 3'-UTR 2027331 2027971 . + . mRNA SPCC1739.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.01" ; systematic_id "SPCC1739.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2028247 2028280 . - . mRNA SPCC1739.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.02c" ; systematic_id "SPCC1739.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2028281 2029030 . - . mRNA SPCC1739.02c ; systematic_id "SPCC1739.02c" ; colour "7" ; gene "SPCC1739.02c ||| mrpl22" ; Alias "mrpl22" ; db_xref "SPD:43/43B02" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL177C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl22" ; product "mitochondrial ribosomal protein subunit L22 (predicted)" ;
chromosome3 GeneDB CDS 2028281 2029030 . - . mRNA SPCC1739.02c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2029029 2029125 . - . mRNA SPCC1739.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.02c" ; systematic_id "SPCC1739.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2029511 2029654 . + . mRNA SPCC1739.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.03" ; systematic_id "SPCC1739.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2029655 2032785 . + . mRNA SPCC1739.03 ; systematic_id "SPCC1739.03" ; colour "2" ; gene "hrr1 ||| SPCC1739.03" ; Alias "hrr1" ; db_xref "SPD:30/30A11" ; GO "GO:0031048; small RNA-mediated chromatin silencing
GO:0030702; chromatin silencing at centromere
GO:0031379; RNA-directed RNA polymerase complex
GO:0005634; nucleus
GO:0004386; helicase activity
GO:0005515; protein binding
GO:0031380; nuclear RNA-directed RNA polymerase complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=DEAD/DEAH box helicase; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "hrr1" ; product "Helicase Required for RNAi-mediated heterochromatin assembly Hrr1" ;
chromosome3 GeneDB CDS 2029655 2031992 . + . mRNA SPCC1739.03 ; colour "2" ;
chromosome3 GeneDB CDS 2032034 2032495 . + . mRNA SPCC1739.03 ; colour "2" ;
chromosome3 GeneDB CDS 2032538 2032785 . + . mRNA SPCC1739.03 ; colour "2" ;
chromosome3 GeneDB misc_feature 2031993 2031998 . + . misc_feature unknown_1532 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2032020 2032033 . + . misc_feature unknown_1533 ; colour "6" ; note "ctaacagaccttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2032496 2032501 . + . misc_feature unknown_1534 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2032523 2032537 . + . misc_feature unknown_1535 ; colour "6" ; note "ttaacatattatcag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2032786 2033306 . + . mRNA SPCC1739.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.03" ; systematic_id "SPCC1739.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2032921 2033031 . - . mRNA SPCC1739.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.04c" ; systematic_id "SPCC1739.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2033032 2034006 . - . mRNA SPCC1739.04c ; db_xref "SPD:14/14A04" ; systematic_id "SPCC1739.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; gene "SPCC1739.04c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 2033032 2033545 . - . mRNA SPCC1739.04c ; colour "8" ;
chromosome3 GeneDB CDS 2033597 2033874 . - . mRNA SPCC1739.04c ; colour "8" ;
chromosome3 GeneDB CDS 2033932 2034006 . - . mRNA SPCC1739.04c ; colour "8" ;
chromosome3 GeneDB misc_feature 2033546 2033563 . - . misc_feature unknown_1536 ; colour "6" ; note "ctaaccctgttgatacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2033591 2033596 . - . misc_feature unknown_1537 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2033875 2033890 . - . misc_feature unknown_1538 ; colour "6" ; note "ctaacaatggttgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2033926 2033931 . - . misc_feature unknown_1539 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2034005 2034351 . - . mRNA SPCC1739.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.04c" ; systematic_id "SPCC1739.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2035726 2035760 . + . mRNA SPCC1739.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.05" ; systematic_id "SPCC1739.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2035761 2036720 . + . mRNA SPCC1739.05 ; systematic_id "SPCC1739.05" ; colour "7" ; gene "set5 ||| SPCC1739.05" ; Alias "set5" ; db_xref "SPD:13/13F04" ; GO "GO:0018024; histone-lysine N-methyltransferase activity
GO:0016571; histone methylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YHR207C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "set5" ; product "histone lysine methyltransferase Set5 (predicted)" ;
chromosome3 GeneDB CDS 2035761 2036720 . + . mRNA SPCC1739.05 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2036721 2036880 . + . mRNA SPCC1739.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.05" ; systematic_id "SPCC1739.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 2037352 2037422 . + . tRNA SPCTRNAGLY.12 ; systematic_id "SPCTRNAGLY.12" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033406; TCC codon-amino acid adaptor activity" ; gene "SPCTRNAGLY.12" ; product "tRNA Glycine" ; note "tRNA Gly anticodon TCC, Cove score 55.00" ;
chromosome3 GeneDB 3'-UTR 2037670 2037951 . - . mRNA SPCC1739.06c ; ID "SPCC1739.06c" ; systematic_id "SPCC1739.06c" ; note "mRNA from AB009602" ;
chromosome3 GeneDB CDS_parts 2037952 2039442 . - . mRNA SPCC1739.06c ; db_xref "SPD:24/24A12" ; systematic_id "SPCC1739.06c" ; colour "7" ; GO "GO:0006783; heme biosynthesis
GO:0009086; methionine biosynthesis
GO:0004851; uroporphyrin-III C-methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR069W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPCC1739.06c" ; product "uroporphyrin methyltransferase (predicted)" ;
chromosome3 GeneDB CDS 2037952 2039442 . - . mRNA SPCC1739.06c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2039441 2039961 . - . mRNA SPCC1739.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.06c" ; systematic_id "SPCC1739.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2040788 2041141 . + . LTR unknown_1540 ; colour "4" ; note "tf2-type LTR" ;
chromosome3 GeneDB 5'-UTR 2041225 2041283 . + . mRNA SPCC1739.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.07" ; systematic_id "SPCC1739.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2041284 2041685 . + . mRNA SPCC1739.07 ; systematic_id "SPCC1739.07" ; colour "2" ; db_xref "SPD:03/03B01" ; Alias "cti1" ; GO "GO:0000176; nuclear exosome (RNase complex)
GO:0031123; RNA 3'-end processing
GO:0000466; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0016180; snRNA processing
GO:0043144; snoRNA processing
GO:0005515; protein binding
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005730; nucleolus
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR081W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, condensin subunit CuT3 Interacting protein; db_xref=PMID:15148393; date=20100212 ||| term=human C1D ortholog; db_xref=PMID:15148393; date=20100212 ||| term=phenotype, inviable; db_xref=PMID:15148393; cv=phenotype; date=20100212" ; primary_name "cti1" ; product "Cut3 interacting protein Cti1, predicted exosome subunit" ;
chromosome3 GeneDB CDS 2041284 2041685 . + . mRNA SPCC1739.07 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 2041686 2042655 . + . mRNA SPCC1739.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.07" ; systematic_id "SPCC1739.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2043282 2044067 . - . mRNA SPCC1739.08c ; db_xref "SPD:09/09H02" ; systematic_id "SPCC1739.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe SPAC22A12.17C and SPAC8E11.10; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPCC1739.08c" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB CDS 2043282 2044067 . - . mRNA SPCC1739.08c ; colour "10" ;
chromosome3 GeneDB misc_RNA 2044977 2046024 . + . misc_RNA SPNCRNA.549 ; db_xref "PMID:18488015" ; synonym "SPNGAF24" ; systematic_id "SPNCRNA.549" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "non-coding RNA (predicted)" ; note "longest ORF with methionine is 57 amino acids" ;
chromosome3 GeneDB 3'-UTR 2046412 2046660 . - . mRNA SPCC1739.09c ; ID "SPCC1739.09c" ; systematic_id "SPCC1739.09c" ; note "mRNA from AU009395" ;
chromosome3 GeneDB CDS_parts 2046661 2047335 . - . mRNA SPCC1739.09c ; systematic_id "SPCC1739.09c" ; colour "7" ; gene "cox13 ||| SPCC1739.09c" ; Alias "cox13" ; db_xref "SPD:07/07G09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005751; mitochondrial respiratory chain complex IV
GO:0004129; cytochrome-c oxidase activity
GO:0030234; enzyme regulator activity
GO:0009060; aerobic respiration" ; primary_name "cox13" ; product "cytochrome c oxidase subunit VIa (predicted)" ; EC_number "1.9.3.1" ;
chromosome3 GeneDB CDS 2046661 2046700 . - . mRNA SPCC1739.09c ; colour "7" ;
chromosome3 GeneDB CDS 2046785 2046844 . - . mRNA SPCC1739.09c ; colour "7" ;
chromosome3 GeneDB CDS 2046897 2046951 . - . mRNA SPCC1739.09c ; colour "7" ;
chromosome3 GeneDB CDS 2047000 2047049 . - . mRNA SPCC1739.09c ; colour "7" ;
chromosome3 GeneDB CDS 2047100 2047124 . - . mRNA SPCC1739.09c ; colour "7" ;
chromosome3 GeneDB CDS 2047173 2047335 . - . mRNA SPCC1739.09c ; colour "7" ;
chromosome3 GeneDB misc_feature 2046701 2046714 . - . misc_feature unknown_1541 ; colour "6" ; note "ctaatgatatacag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2046701 2046784 . - . intron SPCC1739.09c ; systematic_id "SPCC1739.09c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2046779 2046784 . - . misc_feature unknown_1542 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2046845 2046860 . - . misc_feature unknown_1543 ; colour "6" ; note "ctaatgaatggtttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2046845 2046896 . - . intron SPCC1739.09c ; systematic_id "SPCC1739.09c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2046891 2046896 . - . misc_feature unknown_1544 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2046952 2046965 . - . misc_feature unknown_1545 ; colour "6" ; note "ctaacaagagatag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2046952 2046999 . - . intron SPCC1739.09c ; systematic_id "SPCC1739.09c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2046994 2046999 . - . misc_feature unknown_1546 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2047050 2047063 . - . misc_feature unknown_1547 ; colour "6" ; note "ctaacatttgccag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2047050 2047099 . - . intron SPCC1739.09c ; systematic_id "SPCC1739.09c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2047094 2047099 . - . misc_feature unknown_1548 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2047125 2047139 . - . misc_feature unknown_1549 ; colour "6" ; note "ctaacgggtttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2047167 2047172 . - . misc_feature unknown_1550 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2047334 2047388 . - . mRNA SPCC1739.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.09c" ; systematic_id "SPCC1739.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2047605 2047935 . + . mRNA SPCC1739.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.10" ; systematic_id "SPCC1739.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2047936 2048946 . + . mRNA SPCC1739.10 ; systematic_id "SPCC1739.10" ; colour "10" ; gene "SPCC1739.10 ||| mug33" ; Alias "mug33" ; db_xref "SPD:15/15A08" ; GO "GO:0005886; plasma membrane
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOL019W and YFR012W and YMR063W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; primary_name "mug33" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 2047936 2048946 . + . mRNA SPCC1739.10 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 2048947 2049147 . + . mRNA SPCC1739.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.10" ; systematic_id "SPCC1739.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2049201 2049414 . - . mRNA SPCC1739.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.11c" ; systematic_id "SPCC1739.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2049415 2052552 . - . mRNA SPCC1739.11c ; systematic_id "SPCC1739.11c" ; colour "2" ; gene "cdc11 ||| SPCC1739.11c" ; Alias "cdc11" ; db_xref "SPD:30/30B01" ; GO "GO:0005816; spindle pole body
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005198; structural molecule activity
GO:0031028; septation initiation signaling
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11676915; date=19700101 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, multinucleate; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR373W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:12546793; date=20090213 ||| term=human CEP1 and CEP110 ortholog; date=20100208 ||| term=disease associated, cancer; date=20100217 ||| term=target of Cdc7; qualifier=phosphorylated_by; db_xref=PMID:12546793; date=20100826 ||| term=target of Par1; qualifier=dephosphorylated_by; db_xref=PMID:12546793; date=20100826" ; primary_name "cdc11" ; product "SIN component scaffold protein, centriolin ortholog Cdc11" ;
chromosome3 GeneDB CDS 2049415 2052552 . - . mRNA SPCC1739.11c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 2052551 2052557 . - . mRNA SPCC1739.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.11c" ; systematic_id "SPCC1739.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2053548 2053617 . + . mRNA SPCC1739.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.12" ; systematic_id "SPCC1739.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2053618 2054535 . + . mRNA SPCC1739.12 ; systematic_id "SPCC1739.12" ; colour "2" ; gene "ppe1 ||| SPCC1739.12 ||| esp1 ||| ppx1" ; Alias "ppe1" ; db_xref "SPD:12/12G06" ; synonym "esp1 ||| ppx1" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0007346; regulation of mitotic cell cycle
GO:0051983; regulation of chromosome segregation
GO:0005634; nucleus
GO:0005515; protein binding
GO:0008360; regulation of cell shape
GO:0005515; protein binding
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL047W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Extragenic Suppressor of Pim; cv=name_description; date=20091204" ; primary_name "ppe1" ; product "serine/threonine protein phosphatase Ppe1" ; EC_number "3.1.3.16" ;
chromosome3 GeneDB CDS 2053618 2054535 . + . mRNA SPCC1739.12 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 2054536 2056571 . + . mRNA SPCC1739.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.12" ; systematic_id "SPCC1739.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2057084 2057242 . + . mRNA SPCC1739.13 ; ID "SPCC1739.13" ; systematic_id "SPCC1739.13" ; note "mRNA from AB012387" ;
chromosome3 GeneDB CDS_parts 2057243 2059186 . + . mRNA SPCC1739.13 ; systematic_id "SPCC1739.13" ; colour "7" ; gene "ssa2 ||| SPCC1739.13" ; Alias "ssa2" ; db_xref "SPD:26/26H10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, chaperone; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YAL005C and YBL075C and YER103W and YLL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016887; ATPase activity
GO:0051082; unfolded protein binding
GO:0006457; protein folding
GO:0042026; protein refolding
GO:0034605; cellular response to heat
GO:0061077; chaperone-mediated protein folding" ; primary_name "ssa2" ; product "heat shock protein Ssa2 (predicted)" ; reserved_name "ssa2" ;
chromosome3 GeneDB CDS 2057243 2059186 . + . mRNA SPCC1739.13 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2059187 2059331 . + . mRNA SPCC1739.13 ; ID "SPCC1739.13" ; systematic_id "SPCC1739.13" ; note "mRNA from AB012387" ;
chromosome3 GeneDB CDS_parts 2059929 2062892 . + . mRNA SPCC1739.14 ; systematic_id "SPCC1739.14" ; colour "2" ; gene "npp106 ||| SPCC1739.14" ; Alias "npp106" ; db_xref "SPD:29/29G07" ; GO "GO:0005643; nuclear pore
GO:0006406; mRNA export from nucleus
GO:0031965; nuclear membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9372936; date=19700101 ||| term=orthologous to S. cerevisiae YFR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "npp106" ; product "nucleoporin Npp106" ;
chromosome3 GeneDB CDS 2059929 2060152 . + . mRNA SPCC1739.14 ; colour "2" ;
chromosome3 GeneDB CDS 2060315 2062892 . + . mRNA SPCC1739.14 ; colour "2" ;
chromosome3 GeneDB misc_feature 2060153 2060158 . + . misc_feature unknown_1551 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2060301 2060314 . + . misc_feature unknown_1552 ; colour "6" ; note "ttaactcaatctag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2062893 2063005 . + . mRNA SPCC1739.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1739.14" ; systematic_id "SPCC1739.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2063791 2064140 . + . LTR unknown_1553 ; colour "4" ; note "tf1-type LTR" ;
chromosome3 GeneDB CDS_parts 2064452 2065781 . + . mRNA SPCC1739.15 ; systematic_id "SPCC1739.15" ; colour "12" ; gene "wtf21 ||| SPCC1739.15" ; Alias "wtf21" ; obsolete_name "wtf3" ; db_xref "SPD:51/51D06" ; synonym "SPCC1739.15" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf21" ; product "wtf element Wtf21" ;
chromosome3 GeneDB CDS 2064452 2064590 . + . mRNA SPCC1739.15 ; colour "12" ;
chromosome3 GeneDB CDS 2064758 2065003 . + . mRNA SPCC1739.15 ; colour "12" ;
chromosome3 GeneDB CDS 2065051 2065296 . + . mRNA SPCC1739.15 ; colour "12" ;
chromosome3 GeneDB CDS 2065333 2065524 . + . mRNA SPCC1739.15 ; colour "12" ;
chromosome3 GeneDB CDS 2065565 2065627 . + . mRNA SPCC1739.15 ; colour "12" ;
chromosome3 GeneDB CDS 2065678 2065781 . + . mRNA SPCC1739.15 ; colour "12" ;
chromosome3 GeneDB misc_feature 2064591 2064596 . + . misc_feature unknown_1554 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2064745 2064757 . + . misc_feature unknown_1555 ; colour "6" ; note "ttaatttaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2065004 2065009 . + . misc_feature unknown_1556 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2065039 2065050 . + . misc_feature unknown_1557 ; colour "6" ; note "ctaactcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2065297 2065302 . + . misc_feature unknown_1558 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 2065297 2065332 . + . intron SPCC1739.15 ; systematic_id "SPCC1739.15" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 2065322 2065332 . + . misc_feature unknown_1559 ; colour "6" ; note "ctgataaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2065525 2065530 . + . misc_feature unknown_1560 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome3 GeneDB intron 2065525 2065564 . + . intron SPCC1739.15 ; systematic_id "SPCC1739.15" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 2065552 2065564 . + . misc_feature unknown_1561 ; colour "6" ; note "ctaaccatgccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2065628 2065633 . + . misc_feature unknown_1562 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2065665 2065677 . + . misc_feature unknown_1563 ; colour "6" ; note "cttacccgactag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2067605 2068118 . + . misc_feature unknown_1564 ; note "region of G-C/(G+C) strandswitch" ;
chromosome3 GeneDB 5'-UTR 2069001 2069805 . + . mRNA SPCPB1C11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB1C11.01" ; systematic_id "SPCPB1C11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2069806 2071299 . + . mRNA SPCPB1C11.01 ; systematic_id "SPCPB1C11.01" ; colour "2" ; gene "amt1 ||| SPCPB1C11.01" ; Alias "amt1" ; db_xref "SPD:50/50G08" ; GO "GO:0005887; integral to plasma membrane
GO:0015398; high affinity ammonium transporter activity
GO:0015200; methylammonium transporter activity
GO:0072488; ammonium transmembrane transport
GO:0072499; methylammonium transmembrane transport
GO:0031670; cellular response to nutrient
GO:0001403; invasive growth (sensu Saccharomyces)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:16999738; date=20061024 ||| term=orthologous to S. cerevisiae YNL142W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; primary_name "amt1" ; product "ammonium transporter Amt1" ;
chromosome3 GeneDB CDS 2069806 2071299 . + . mRNA SPCPB1C11.01 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 2071300 2071640 . + . mRNA SPCPB1C11.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB1C11.01" ; systematic_id "SPCPB1C11.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 2072080 2072174 . + . tRNA SPCTRNASER.13 ; systematic_id "SPCTRNASER.13" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033453; GCT codon-amino acid adaptor activity" ; gene "SPCTRNASER.13" ; product "tRNA Serine" ; note "tRNA Ser anticodon GCT, Cove score 74.09" ;
chromosome3 GeneDB intron 2072119 2072129 . + . intron unknown_1565 ; note "intron tRNA Ser anticodon GCT" ;
chromosome3 GeneDB 5'-UTR 2072907 2072966 . + . mRNA SPCPB1C11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB1C11.02" ; systematic_id "SPCPB1C11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2072967 2074484 . + . mRNA SPCPB1C11.02 ; db_xref "SPD:50/50G10" ; systematic_id "SPCPB1C11.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL268W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPCPB1C11.02" ; product "amino acid permease (predicted)" ;
chromosome3 GeneDB CDS 2072967 2074484 . + . mRNA SPCPB1C11.02 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2074485 2074940 . + . mRNA SPCPB1C11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB1C11.02" ; systematic_id "SPCPB1C11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 2074991 2075062 . - . tRNA SPCTRNAGLN.06 ; systematic_id "SPCTRNAGLN.06" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033404; TTG codon-amino acid adaptor activity" ; gene "SPCTRNAGLN.06" ; product "tRNA Glutamine" ; note "tRNA Gln anticodon TTG, Cove score 69.22" ;
chromosome3 GeneDB 5'-UTR 2076868 2077082 . + . mRNA SPCPB1C11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB1C11.03" ; systematic_id "SPCPB1C11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2077083 2078795 . + . mRNA SPCPB1C11.03 ; db_xref "SPD:49/49B06" ; systematic_id "SPCPB1C11.03" ; colour "7" ; GO "GO:0042883; cysteine transport
GO:0033229; cysteine transmembrane transporter activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL055W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCPB1C11.03" ; product "cysteine transporter (predicted)" ;
chromosome3 GeneDB CDS 2077083 2078795 . + . mRNA SPCPB1C11.03 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2078796 2078958 . + . mRNA SPCPB1C11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCPB1C11.03" ; systematic_id "SPCPB1C11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2079421 2080662 . - . mRNA SPCC576.01c ; systematic_id "SPCC576.01c" ; colour "7" ; gene "SPCPB1C11.04c ||| SPCC576.01c" ; Alias "SPCPB1C11.04c" ; db_xref "SPD:50/50A05" ; synonym "SPCPB1C11.04c" ; GO "GO:0000907; sulfonate dioxygenase activity
GO:0044273; sulfur compound catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL057C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "SPCPB1C11.04c" ; product "sulfonate dioxygenase (predicted)" ; EC_number "1.14.11.-" ;
chromosome3 GeneDB CDS 2079421 2080662 . - . mRNA SPCC576.01c ; colour "7" ;
chromosome3 GeneDB misc_feature 2080170 2080260 . + . misc_feature unknown_1566 ; note "455 (+1) 1 91 SPCC576 S. pombe chromosome 3" ;
chromosome3 GeneDB CDS_parts 2081247 2081606 . - . mRNA SPCC576.19c ; db_xref "SPD:51/51H01" ; systematic_id "SPCC576.19c" ; colour "6" ; gene "SPCC576.19c" ; product "dubious" ;
chromosome3 GeneDB CDS 2081247 2081606 . - . mRNA SPCC576.19c ; colour "6" ;
chromosome3 GeneDB 5'-UTR 2082257 2082646 . + . mRNA SPCC576.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.02" ; systematic_id "SPCC576.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2082647 2083357 . + . mRNA SPCC576.02 ; db_xref "SPD:08/08D11" ; systematic_id "SPCC576.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR030C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPCC576.02" ; product "hydantoin racemase family (predicted)" ;
chromosome3 GeneDB CDS 2082647 2083357 . + . mRNA SPCC576.02 ; colour "10" ;
chromosome3 GeneDB LTR 2083919 2084275 . + . LTR unknown_1567 ; note "Tf1-type LTR" ;
chromosome3 GeneDB 3'-UTR 2084942 2085035 . - . mRNA SPCC576.03c ; ID "SPCC576.03c" ; systematic_id "SPCC576.03c" ; note "mRNA from AF083335" ;
chromosome3 GeneDB CDS_parts 2085036 2085614 . - . mRNA SPCC576.03c ; systematic_id "SPCC576.03c" ; colour "2" ; gene "tpx1 ||| SPCC576.03c" ; db_xref "SPD:06/06C07" ; Alias "tpx1" ; GO "GO:0005737; cytoplasm
GO:0004601; peroxidase activity
GO:0051920; peroxiredoxin activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0008379; thioredoxin peroxidase activity
GO:0045454; cell redox homeostasis
GO:0034599; cellular response to oxidative stress
GO:0061077; chaperone-mediated protein folding
GO:0042744; hydrogen peroxide catabolic process
GO:0006457; protein folding
GO:0010468; regulation of gene expression
GO:0006417; regulation of tanslation
GO:0019430; removal of superoxide radicals" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, aerobic growth defects; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=phenotype, accumulation of carbonylated proteins; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=target is Pap1; db_xref=PMID:15824112; date=20050419 ||| term=target is Sty1; db_xref=PMID:15225554; date=20050419 ||| term=orthologous to S. cerevisiae YML028W and YDR453C; date=19700101 ||| term=human PRDX2 ortholog; date=20080622 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111 ||| term=misc functional group, chaperone; evidence=ISS; cv=m_f_g; date=20100126 ||| term=modification, disulphide bond; residue=cys48|cys169; db_xref=PMID:17409354; cv=pt_mod; date=20100201 ||| term=modification, sulfinic acid formation; residue=cys48; db_xref=PMID:17409354; cv=pt_mod; date=20100201 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Pap1; db_xref=PMID:15824112; date=20050419 ||| term=target is Sty1; db_xref=PMID:15225554; date=20050419" ; primary_name "tpx1" ; product "thioredoxin peroxidase Tpx1" ;
chromosome3 GeneDB CDS 2085036 2085614 . - . mRNA SPCC576.03c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 2085615 2085706 . - . mRNA SPCC576.03c ; ID "SPCC576.03c" ; systematic_id "SPCC576.03c" ; note "mRNA from AF083335" ;
chromosome3 GeneDB 5'-UTR 2086711 2086876 . + . mRNA SPCC576.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.04" ; systematic_id "SPCC576.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2086877 2087677 . + . mRNA SPCC576.04 ; db_xref "SPD:10/10B07" ; systematic_id "SPCC576.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL305C; date=19700101 ||| term=human TMBIM4 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; colour "10" ; gene "SPCC576.04" ; product "conserved eukaryotic protein" ;
chromosome3 GeneDB CDS 2086877 2087677 . + . mRNA SPCC576.04 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 2087678 2088141 . + . mRNA SPCC576.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.04" ; systematic_id "SPCC576.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2088527 2088545 . + . mRNA SPCC576.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.05" ; systematic_id "SPCC576.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2088546 2091978 . + . mRNA SPCC576.05 ; db_xref "SPD:48/48C08" ; systematic_id "SPCC576.05" ; colour "7" ; GO "GO:0005643; nuclear pore
GO:0006406; mRNA export from nucleus
GO:0006611; protein export from nucleus
GO:0042274; ribosome small subunit biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC576.05" ; product "nucear export factor Sac3 (predicted)" ;
chromosome3 GeneDB CDS 2088546 2089052 . + . mRNA SPCC576.05 ; colour "7" ;
chromosome3 GeneDB CDS 2089274 2089517 . + . mRNA SPCC576.05 ; colour "7" ;
chromosome3 GeneDB CDS 2089619 2090158 . + . mRNA SPCC576.05 ; colour "7" ;
chromosome3 GeneDB CDS 2090195 2091978 . + . mRNA SPCC576.05 ; colour "7" ;
chromosome3 GeneDB misc_feature 2089053 2089058 . + . misc_feature unknown_1568 ; note "gtttga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2089258 2089273 . + . misc_feature unknown_1569 ; note "ttcacacatgacttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2089518 2089523 . + . misc_feature unknown_1570 ; note "gtaaac, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2089607 2089618 . + . misc_feature unknown_1571 ; note "ctaaccttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2090159 2090164 . + . misc_feature unknown_1572 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2090183 2090194 . + . misc_feature unknown_1573 ; note "ctaactcataag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2091979 2091991 . + . mRNA SPCC576.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.05" ; systematic_id "SPCC576.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2092100 2092201 . - . mRNA SPCC576.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.06c" ; systematic_id "SPCC576.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2092202 2093637 . - . mRNA SPCC576.06c ; db_xref "KEGG:MAP00400; ||| KEGG:MAP00970; ||| SPD:23/23B09" ; systematic_id "SPCC576.06c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL097W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004831; tyrosine-tRNA ligase activity
GO:0006437; tyrosyl-tRNA aminoacylation" ; gene "SPCC576.06c" ; product "mitochondrial tyrosine-tRNA ligase (predicted)" ; EC_number "6.1.1.1" ;
chromosome3 GeneDB CDS 2092202 2092735 . - . mRNA SPCC576.06c ; colour "7" ;
chromosome3 GeneDB CDS 2092786 2093524 . - . mRNA SPCC576.06c ; colour "7" ;
chromosome3 GeneDB CDS 2093573 2093637 . - . mRNA SPCC576.06c ; colour "7" ;
chromosome3 GeneDB misc_feature 2092736 2092752 . - . misc_feature unknown_1574 ; note "ctaacaaatccttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2092780 2092785 . - . misc_feature unknown_1575 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2093525 2093543 . - . misc_feature unknown_1576 ; note "ttaactgaactttgttaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2093567 2093572 . - . misc_feature unknown_1577 ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 2093841 2094413 . + . mRNA SPCC576.07 ; systematic_id "SPCC576.07" ; colour "7" ; gene "ret3 ||| SPCC576.07" ; Alias "ret3" ; db_xref "SPD:06/06B03" ; GO "GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0030126; COPI vesicle coat
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ret3" ; product "coatomer zeta subunit (predicted)" ;
chromosome3 GeneDB CDS 2093841 2094413 . + . mRNA SPCC576.07 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2094414 2094741 . + . mRNA SPCC576.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.07" ; systematic_id "SPCC576.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2095135 2095226 . - . mRNA SPCC576.08c ; ID "SPCC576.08c" ; systematic_id "SPCC576.08c" ; note "mRNA from AU012777" ;
chromosome3 GeneDB CDS_parts 2095227 2095988 . - . mRNA SPCC576.08c ; systematic_id "SPCC576.08c" ; colour "7" ; gene "rps2 ||| SPCC576.08c" ; Alias "rps2" ; db_xref "SPD:09/09D06" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, methylated; db_xref=PMID:15175657; date=20101021 ||| term=target of Rmt3; db_xref=PMID:15175657; date=20101021" ; primary_name "rps2" ; product "40S ribosomal protein S2 (predicted)" ;
chromosome3 GeneDB CDS 2095227 2095988 . - . mRNA SPCC576.08c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2095989 2096018 . - . mRNA SPCC576.08c ; ID "SPCC576.08c" ; systematic_id "SPCC576.08c" ; note "mRNA from AU010208" ;
chromosome3 GeneDB CDS_parts 2096558 2096914 . + . mRNA SPCC576.09 ; systematic_id "SPCC576.09" ; colour "7" ; gene "rps20 ||| SPCC576.09" ; Alias "rps20" ; db_xref "SPD:02/02D09" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps20" ; product "40S ribosomal protein S20 (predicted)" ;
chromosome3 GeneDB CDS 2096558 2096914 . + . mRNA SPCC576.09 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2096915 2096942 . + . mRNA SPCC576.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.09" ; systematic_id "SPCC576.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 2097286 2097395 . + . misc_RNA SPNCRNA.119 ; db_xref "EMBL:AU009118" ; systematic_id "SPNCRNA.119" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU009118; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted;db_xref= EMBL:AU009118; date=20050412" ; gene "SPNCRNA.119" ; product "non-coding RNA (predicted)" ; note "mRNA from AU009118; from EST not associated with an ORF" ;
chromosome3 GeneDB 3'-UTR 2097328 2097678 . - . mRNA SPCC576.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.10c" ; systematic_id "SPCC576.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2097679 2098848 . - . mRNA SPCC576.10c ; systematic_id "SPCC576.10c" ; colour "7" ; gene "rpt3 ||| SPCC576.10c" ; Alias "rpt3" ; db_xref "SPD:18/18E08" ; GO "GO:0016887; ATPase activity
GO:0004175; endopeptidase activity
GO:0006511; ubiquitin-dependent protein catabolism
GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDR394W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpt3" ; product "19S proteasome regulatory subunit Rpt3 (predicted)" ;
chromosome3 GeneDB CDS 2097679 2098848 . - . mRNA SPCC576.10c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2098847 2098866 . - . mRNA SPCC576.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.10c" ; systematic_id "SPCC576.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2099856 2099878 . + . mRNA SPCC576.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.11" ; systematic_id "SPCC576.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2099879 2100484 . + . mRNA SPCC576.11 ; systematic_id "SPCC576.11" ; colour "7" ; gene "rpl15 ||| SPCC576.11" ; Alias "rpl15" ; db_xref "SPD:41/41D07" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR029C and YMR121C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl15" ; product "60S ribosomal protein L15 (predicted)" ;
chromosome3 GeneDB CDS 2099879 2100484 . + . mRNA SPCC576.11 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2100485 2100517 . + . mRNA SPCC576.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.11" ; systematic_id "SPCC576.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2101432 2101743 . - . mRNA SPCC576.12c ; systematic_id "SPCC576.12c" ; colour "2" ; gene "SPCC576.12c ||| mhf2" ; Alias "mhf2" ; db_xref "SPD:01/01F04" ; GO "GO:0071821; FANCM-MHF complex
GO:0003690; double-stranded DNA binding
GO: SF 3024450 NTR remove parents; Rad51-dependent gene conversion at stalled replication forks
GO:0000712; double-strand break repair via homologous recombination
GO:0031297; replication fork processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL160C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human STRA13 ortholog; db_xref=PMID:20347432; date=20100702 ||| term=disease associated, Fanconi anemia; db_xref=PMID:20347432; date=20100702" ; primary_name "mhf2" ; product "FANCM-MHF complex subunit Mhf2" ;
chromosome3 GeneDB CDS 2101432 2101552 . - . mRNA SPCC576.12c ; colour "2" ;
chromosome3 GeneDB CDS 2101595 2101743 . - . mRNA SPCC576.12c ; colour "2" ;
chromosome3 GeneDB misc_feature 2101553 2101568 . - . misc_feature unknown_1578 ; note "ctaattattcgtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2101589 2101594 . - . misc_feature unknown_1579 ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2101742 2101836 . - . mRNA SPCC576.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.12c" ; systematic_id "SPCC576.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2101753 2102400 . + . mRNA SPCC576.13 ; systematic_id "SPCC576.13" ; colour "2" ; gene "SPCC576.13 ||| swc5" ; Alias "swc5" ; db_xref "SPD:07/07E02" ; GO "GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR231C; date=19700101 ||| term=disease associated, bucentaur or craniofacial development; date=20080622 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "swc5" ; product "Swr1 complex subunit Swc5" ;
chromosome3 GeneDB CDS 2101753 2102400 . + . mRNA SPCC576.13 ; colour "2" ;
chromosome3 GeneDB CDS_parts 2102587 2103814 . + . mRNA SPCC576.14 ; systematic_id "SPCC576.14" ; colour "7" ; db_xref "SPD:22/22B12" ; Alias "dph5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR172C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human DPH5 ortholog; date=20100120" ; GO "GO:0005737; cytoplasm
GO:0017183; peptidyl-diphthamide biosynthesis from peptidyl-histidine
GO:0004164; diphthine synthase activity
GO:0006417; regulation of translation" ; primary_name "dph5" ; product "diphthine synthase Dph5 (predicted)" ; EC_number "2.1.1.98" ;
chromosome3 GeneDB CDS 2102587 2102846 . + . mRNA SPCC576.14 ; colour "7" ;
chromosome3 GeneDB CDS 2103132 2103361 . + . mRNA SPCC576.14 ; colour "7" ;
chromosome3 GeneDB CDS 2103405 2103536 . + . mRNA SPCC576.14 ; colour "7" ;
chromosome3 GeneDB CDS 2103585 2103814 . + . mRNA SPCC576.14 ; colour "7" ;
chromosome3 GeneDB misc_feature 2102847 2102852 . + . misc_feature unknown_1580 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2103120 2103131 . + . misc_feature unknown_1581 ; note "ctaattgtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2103362 2103367 . + . misc_feature unknown_1582 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2103392 2103404 . + . misc_feature unknown_1583 ; note "ctgacaataaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2103537 2103542 . + . misc_feature unknown_1584 ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2103564 2103584 . + . misc_feature unknown_1585 ; note "ttaattgttaaccacccttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2103815 2103817 . + . mRNA SPCC576.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.14" ; systematic_id "SPCC576.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2103982 2104370 . - . mRNA SPCC576.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.15c" ; systematic_id "SPCC576.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2104371 2106258 . - . mRNA SPCC576.15c ; systematic_id "SPCC576.15c" ; colour "2" ; gene "ksg1 ||| SPCC576.15c" ; Alias "ksg1" ; db_xref "SPD:26/26E01" ; GO "GO:0004676; 3-phosphoinositide-dependent protein kinase activity
GO:0005515; protein binding
GO:0031505; cell wall organization and biogenesis
GO:0030437; regulation of ascospore formation
GO:0031137; regulation of conjugation with cellular fusion
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PKC subfamily; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10071224; date=19700101 ||| term=orthologous to S. cerevisiae YDR490C and YOL100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ksg1" ; product "serine/threonine protein kinase Ksg1" ;
chromosome3 GeneDB CDS 2104371 2105576 . - . mRNA SPCC576.15c ; colour "2" ;
chromosome3 GeneDB CDS 2105686 2106258 . - . mRNA SPCC576.15c ; colour "2" ;
chromosome3 GeneDB misc_feature 2105577 2105592 . - . misc_feature unknown_1586 ; note "cttacacataatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2105680 2105685 . - . misc_feature unknown_1587 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2106257 2106290 . - . mRNA SPCC576.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.15c" ; systematic_id "SPCC576.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 2107603 2107915 . + . misc_RNA SPNCRNA.512 ; db_xref "PMID:18488015" ; synonym "SPNG2571" ; systematic_id "SPNCRNA.512" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB LTR 2108288 2108631 . - . LTR unknown_1588 ; note "Tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 2109181 2110528 . - . mRNA SPCC576.16c ; Alias "wtf22" ; systematic_id "SPCC576.16c" ; pseudo "_no_value" ; colour "13" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; gene "wtf22 ||| SPCC576.16c" ; primary_name "wtf22" ; product "pseudogene wtf element Wtf22" ;
chromosome3 GeneDB CDS 2109181 2109395 . - . mRNA SPCC576.16c ; colour "13" ;
chromosome3 GeneDB CDS 2109432 2109608 . - . mRNA SPCC576.16c ; colour "13" ;
chromosome3 GeneDB CDS 2109645 2109923 . - . mRNA SPCC576.16c ; colour "13" ;
chromosome3 GeneDB CDS 2109973 2110221 . - . mRNA SPCC576.16c ; colour "13" ;
chromosome3 GeneDB CDS 2110391 2110528 . - . mRNA SPCC576.16c ; colour "13" ;
chromosome3 GeneDB misc_feature 2109396 2109408 . - . misc_feature unknown_1589 ; note "ctaaccatatcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2109458 2109463 . - . misc_feature unknown_1590 ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2109609 2109619 . - . misc_feature unknown_1591 ; note "ctaacatacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2109639 2109644 . - . misc_feature unknown_1592 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2109924 2109935 . - . misc_feature unknown_1593 ; note "ctaactcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2109967 2109972 . - . misc_feature unknown_1594 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2110185 2110205 . - . misc_feature unknown_1595 ; note "aatcctcctaacacacatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2110205 2110210 . - . misc_feature unknown_1596 ; note "gtaaat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2110222 2110242 . - . misc_feature unknown_1597 ; note "cattatattaattcaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2110376 2110381 . - . misc_feature unknown_1598 ; note "gtaaat, splice donor sequence" ;
chromosome3 GeneDB LTR 2110854 2111180 . - . LTR unknown_1599 ; note "Tf2-type LTR" ;
chromosome3 GeneDB 3'-UTR 2111240 2111637 . - . mRNA SPCC576.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.17c" ; systematic_id "SPCC576.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2111638 2113390 . - . mRNA SPCC576.17c ; db_xref "SPD:45/45G08" ; systematic_id "SPCC576.17c" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0005887; integral to plasma membrane
GO:0031923; pyridoxine transport
GO:0031928; pyridoxine transporter activity
GO:0031920; pyridoxal transport
GO:0031925; pyridoxal transporter activity
GO:0031922; pyridoxamine transport
GO:0031927; pyridoxamine transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPAC17A2.01 and SPCC965.13; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC576.17c" ; product "pyridoxamine/pyridoxine/pyridoxal transmembrane transporter (predicted)" ;
chromosome3 GeneDB CDS 2111638 2113158 . - . mRNA SPCC576.17c ; colour "7" ;
chromosome3 GeneDB CDS 2113334 2113390 . - . mRNA SPCC576.17c ; colour "7" ;
chromosome3 GeneDB misc_feature 2113159 2113179 . - . misc_feature unknown_1600 ; note "taacaaattcttttctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2113328 2113333 . - . misc_feature unknown_1601 ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2113389 2113660 . - . mRNA SPCC576.17c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC576.17c" ; systematic_id "SPCC576.17c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2115206 2115315 . - . mRNA SPCC126.01c ; ID "SPCC126.01c" ; systematic_id "SPCC126.01c" ; note "mRNA from AU007975" ;
chromosome3 GeneDB CDS_parts 2115316 2116425 . - . mRNA SPCC126.01c ; systematic_id "SPCC126.01c" ; colour "10" ; gene "SPCC576.18c ||| SPCC126.01c" ; Alias "SPCC576.18c" ; db_xref "SPD:17/17E03" ; synonym "SPCC576.18c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPCC576.18c" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 2115316 2116425 . - . mRNA SPCC126.01c ; colour "10" ;
chromosome3 GeneDB misc_feature 2115587 2115735 . - . misc_feature unknown_1602 ; note "nominal overlap with cosmid SPCC126, EM:AL034490 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 2115587 2115735 . + . misc_feature unknown_1603 ; note "nominal overlap with cosmid SPCC576, EM:AL031798 S. pombe chromosome 3" ;
chromosome3 GeneDB 5'-UTR 2116424 2116687 . - . mRNA SPCC126.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.01c" ; systematic_id "SPCC126.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2117128 2117286 . - . mRNA SPCC126.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.02c" ; systematic_id "SPCC126.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2117287 2119418 . - . mRNA SPCC126.02c ; systematic_id "SPCC126.02c" ; colour "2" ; gene "pku70 ||| SPCC126.02c" ; Alias "pku70" ; db_xref "SPD:37/37D11" ; GO "GO:0006303; double-strand break repair via nonhomologous end joining
GO:0000084; S phase of mitotic cell cycle
GO:0000781; chromosome, telomeric region
GO:0042162; telomeric DNA binding
GO:0000723; telomere maintenance
GO:0046982; protein heterodimerization activity
GO:0004003; ATP-dependent DNA helicase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SAP domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YMR284W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pku70" ; product "Ku domain protein Pku70" ;
chromosome3 GeneDB CDS 2117287 2117397 . - . mRNA SPCC126.02c ; colour "2" ;
chromosome3 GeneDB CDS 2117451 2117660 . - . mRNA SPCC126.02c ; colour "2" ;
chromosome3 GeneDB CDS 2117706 2118895 . - . mRNA SPCC126.02c ; colour "2" ;
chromosome3 GeneDB CDS 2118970 2119066 . - . mRNA SPCC126.02c ; colour "2" ;
chromosome3 GeneDB CDS 2119138 2119320 . - . mRNA SPCC126.02c ; colour "2" ;
chromosome3 GeneDB CDS 2119386 2119418 . - . mRNA SPCC126.02c ; colour "2" ;
chromosome3 GeneDB misc_feature 2117398 2117415 . - . misc_feature unknown_1604 ; colour "6" ; note "gtaacagttcatatgaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2117445 2117450 . - . misc_feature unknown_1605 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2117661 2117672 . - . misc_feature unknown_1606 ; colour "6" ; note "ttaacattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2117700 2117705 . - . misc_feature unknown_1607 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2118896 2118918 . - . misc_feature unknown_1608 ; colour "6" ; note "ctaattttgttcaattgtttaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2118964 2118969 . - . misc_feature unknown_1609 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2119067 2119081 . - . misc_feature unknown_1610 ; colour "6" ; note "ctaaccacagcgcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2119132 2119137 . - . misc_feature unknown_1611 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2119321 2119337 . - . misc_feature unknown_1612 ; colour "6" ; note "ctgacgattgtttaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2119380 2119385 . - . misc_feature unknown_1613 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2119417 2119548 . - . mRNA SPCC126.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.02c" ; systematic_id "SPCC126.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2119789 2120137 . - . LTR unknown_1614 ; note "1592 (-1) 1 349 Tf2-type LTR" ;
chromosome3 GeneDB 5'-UTR 2120626 2120664 . + . mRNA SPCC126.03 ; ID "SPCC126.03" ; systematic_id "SPCC126.03" ; note "mRNA from SPO251329" ;
chromosome3 GeneDB CDS_parts 2120665 2122373 . + . mRNA SPCC126.03 ; systematic_id "SPCC126.03" ; colour "2" ; gene "pus1 ||| SPCC126.03" ; Alias "pus1" ; obsolete_name "lps1" ; db_xref "SPD:35/35E07" ; synonym "SPCC126.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL212C and YGL063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006400; tRNA modification
GO:0009982; pseudouridine synthase activity
GO:0005634; nucleus" ; primary_name "pus1" ; product "tRNA pseudouridine synthase Lsp1" ; EC_number "5.4.99.-" ;
chromosome3 GeneDB CDS 2120665 2121741 . + . mRNA SPCC126.03 ; colour "2" ;
chromosome3 GeneDB CDS 2121807 2122162 . + . mRNA SPCC126.03 ; colour "2" ;
chromosome3 GeneDB CDS 2122202 2122373 . + . mRNA SPCC126.03 ; colour "2" ;
chromosome3 GeneDB misc_feature 2121742 2121747 . + . misc_feature unknown_1615 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 2121742 2121806 . + . intron SPCC126.03 ; systematic_id "SPCC126.03" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 2121795 2121806 . + . misc_feature unknown_1616 ; colour "6" ; note "ctaacattctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2122163 2122168 . + . misc_feature unknown_1617 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 2122163 2122201 . + . intron SPCC126.03 ; systematic_id "SPCC126.03" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 2122189 2122201 . + . misc_feature unknown_1618 ; colour "6" ; note "ctaaccggtttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2122374 2122630 . + . mRNA SPCC126.03 ; ID "SPCC126.03" ; systematic_id "SPCC126.03" ; note "mRNA from SPO251329" ;
chromosome3 GeneDB 3'-UTR 2122681 2122750 . - . mRNA SPCC126.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.04c" ; systematic_id "SPCC126.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2122751 2123856 . - . mRNA SPCC126.04c ; systematic_id "SPCC126.04c" ; colour "2" ; gene "SPCC126.04c ||| sgf73" ; Alias "sgf73" ; db_xref "SPD:17/17D04" ; GO "GO:0016568; chromatin modification
GO:0016573; histone acetylation
GO:0006338; chromatin remodeling
GO:0006366; transcription from RNA polymerase II promoter
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, spinocerebellar ataxia; date=19700101 ||| term=orthologous to S. cerevisiae YGL066W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706 ||| term=disease associated, neurological disorders; date=20091217" ; primary_name "sgf73" ; product "SAGA complex subunit Sgf73" ;
chromosome3 GeneDB CDS 2122751 2123202 . - . mRNA SPCC126.04c ; colour "2" ;
chromosome3 GeneDB CDS 2123274 2123856 . - . mRNA SPCC126.04c ; colour "2" ;
chromosome3 GeneDB misc_feature 2123203 2123218 . - . misc_feature unknown_1619 ; colour "6" ; note "ctaacattcaattaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2123268 2123273 . - . misc_feature unknown_1620 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2123855 2123893 . - . mRNA SPCC126.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.04c" ; systematic_id "SPCC126.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2124166 2124544 . - . mRNA SPCC126.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.05c" ; systematic_id "SPCC126.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2124545 2125660 . - . mRNA SPCC126.05c ; systematic_id "SPCC126.05c" ; colour "7" ; gene "SPCC126.05c ||| mrpl17" ; Alias "mrpl17" ; db_xref "SPD:17/17E12" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL252C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl17" ; product "mitochondrial ribosomal protein subunit L17 (predicted)" ;
chromosome3 GeneDB CDS 2124545 2124700 . - . mRNA SPCC126.05c ; colour "7" ;
chromosome3 GeneDB CDS 2124768 2124866 . - . mRNA SPCC126.05c ; colour "7" ;
chromosome3 GeneDB CDS 2125015 2125448 . - . mRNA SPCC126.05c ; colour "7" ;
chromosome3 GeneDB CDS 2125543 2125660 . - . mRNA SPCC126.05c ; colour "7" ;
chromosome3 GeneDB misc_feature 2124701 2124718 . - . misc_feature unknown_1621 ; colour "6" ; note "ttaaccagttatttctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2124762 2124767 . - . misc_feature unknown_1622 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2124867 2124880 . - . misc_feature unknown_1623 ; colour "6" ; note "ctaacaaactgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2125009 2125014 . - . misc_feature unknown_1624 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2125449 2125462 . - . misc_feature unknown_1625 ; colour "6" ; note "ctaacatatcttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2125537 2125542 . - . misc_feature unknown_1626 ; colour "6" ; note "gtacag, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2125659 2125706 . - . mRNA SPCC126.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.05c" ; systematic_id "SPCC126.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2125925 2125949 . + . mRNA SPCC126.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.06" ; systematic_id "SPCC126.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2125950 2127282 . + . mRNA SPCC126.06 ; systematic_id "SPCC126.06" ; colour "7" ; gene "twf1 ||| SPCC126.06" ; Alias "twf1" ; db_xref "SPD:20/20F05" ; GO "GO:0030479; actin cortical patch
GO:0003785; actin monomer binding
GO:0042989; sequestering of actin monomers" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cofilin/tropomyosin family; date=19700101 ||| term=orthologous to S. cerevisiae YGR080W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "twf1" ; product "twinfilin (predicted)" ;
chromosome3 GeneDB CDS 2125950 2125974 . + . mRNA SPCC126.06 ; colour "7" ;
chromosome3 GeneDB CDS 2126013 2126090 . + . mRNA SPCC126.06 ; colour "7" ;
chromosome3 GeneDB CDS 2126154 2126521 . + . mRNA SPCC126.06 ; colour "7" ;
chromosome3 GeneDB CDS 2126630 2126758 . + . mRNA SPCC126.06 ; colour "7" ;
chromosome3 GeneDB CDS 2126814 2126949 . + . mRNA SPCC126.06 ; colour "7" ;
chromosome3 GeneDB CDS 2126990 2127108 . + . mRNA SPCC126.06 ; colour "7" ;
chromosome3 GeneDB CDS 2127151 2127282 . + . mRNA SPCC126.06 ; colour "7" ;
chromosome3 GeneDB misc_feature 2125975 2125980 . + . misc_feature unknown_1627 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2125998 2126012 . + . misc_feature unknown_1628 ; colour "6" ; note "ctaacgtgtggatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2126091 2126096 . + . misc_feature unknown_1629 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2126141 2126153 . + . misc_feature unknown_1630 ; colour "6" ; note "ctaaatgatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2126522 2126527 . + . misc_feature unknown_1631 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2126615 2126629 . + . misc_feature unknown_1632 ; colour "6" ; note "ttaacaactatgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2126759 2126764 . + . misc_feature unknown_1633 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2126797 2126813 . + . misc_feature unknown_1634 ; colour "6" ; note "ctaacctcctttaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2126950 2126955 . + . misc_feature unknown_1635 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2126976 2126989 . + . misc_feature unknown_1636 ; colour "6" ; note "ttaacaaggtctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2127109 2127114 . + . misc_feature unknown_1637 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2127139 2127150 . + . misc_feature unknown_1638 ; colour "6" ; note "ctcacatgacag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2127283 2127454 . + . mRNA SPCC126.06 ; ID "SPCC126.06" ; systematic_id "SPCC126.06" ; note "mRNA from AU013023" ;
chromosome3 GeneDB 3'-UTR 2127578 2127733 . - . mRNA SPCC126.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.07c" ; systematic_id "SPCC126.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2127734 2129449 . - . mRNA SPCC126.07c ; db_xref "SPD:35/35E12" ; systematic_id "SPCC126.07c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=zf-PHD finger; date=20060726 ||| term=orthologous to S. cerevisiae YPR093C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC126.07c" ; product "human CTD-binding SR-like protein rA9 homolog (predicted)" ;
chromosome3 GeneDB CDS 2127734 2129449 . - . mRNA SPCC126.07c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2129448 2129500 . - . mRNA SPCC126.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.07c" ; systematic_id "SPCC126.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2129831 2130040 . - . mRNA SPCC126.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.08c" ; systematic_id "SPCC126.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2130041 2130979 . - . mRNA SPCC126.08c ; db_xref "SPD:43/43F04" ; systematic_id "SPCC126.08c" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC126.08c" ; product "lectin family glycoprotien receptor (predicted)" ;
chromosome3 GeneDB CDS 2130041 2130979 . - . mRNA SPCC126.08c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2130978 2131043 . - . mRNA SPCC126.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.08c" ; systematic_id "SPCC126.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2131757 2132201 . + . mRNA SPCC126.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.09" ; systematic_id "SPCC126.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2132202 2133458 . + . mRNA SPCC126.09 ; db_xref "SPD:20/20B03" ; systematic_id "SPCC126.09" ; colour "7" ; GO "GO:0006882; zinc ion homeostasis
GO:0000329; vacuolar membrane
GO:0006829; zinc ion transport
GO:0005385; zinc ion transporter activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC126.09" ; product "vacuolar membrane zinc transporter (predicted)" ;
chromosome3 GeneDB CDS 2132202 2133458 . + . mRNA SPCC126.09 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2133459 2134067 . + . mRNA SPCC126.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.09" ; systematic_id "SPCC126.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2134446 2134701 . + . mRNA SPCC126.10 ; ID "SPCC126.10" ; systematic_id "SPCC126.10" ; note "mRNA from AB017605" ;
chromosome3 GeneDB CDS_parts 2134702 2135442 . + . mRNA SPCC126.10 ; systematic_id "SPCC126.10" ; colour "7" ; gene "iah1 ||| SPCC126.10" ; Alias "iah1" ; db_xref "SPD:09/09A02" ; GO "GO:0006083; acetate metabolism
GO:0016788; hydrolase activity, acting on ester bonds" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR126C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "iah1" ; product "isoamyl acetate hydrolytic enzyme Iah1 (predicted)" ;
chromosome3 GeneDB CDS 2134702 2135442 . + . mRNA SPCC126.10 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2135443 2135714 . + . mRNA SPCC126.10 ; ID "SPCC126.10" ; systematic_id "SPCC126.10" ; note "mRNA from AB017605" ;
chromosome3 GeneDB 3'-UTR 2135880 2136200 . - . mRNA SPCC126.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.11c" ; systematic_id "SPCC126.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2136201 2136854 . - . mRNA SPCC126.11c ; db_xref "SPD:07/07E12" ; systematic_id "SPCC126.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC126.11c" ; product "RNA-binding protein, rrm type" ;
chromosome3 GeneDB CDS 2136201 2136653 . - . mRNA SPCC126.11c ; colour "10" ;
chromosome3 GeneDB CDS 2136704 2136768 . - . mRNA SPCC126.11c ; colour "10" ;
chromosome3 GeneDB CDS 2136821 2136854 . - . mRNA SPCC126.11c ; colour "10" ;
chromosome3 GeneDB misc_feature 2136654 2136669 . - . misc_feature unknown_1639 ; colour "6" ; note "ctaacaaattgtgaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2136698 2136703 . - . misc_feature unknown_1640 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2136769 2136787 . - . misc_feature unknown_1641 ; colour "6" ; note "ctaacatatttttacatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2136815 2136820 . - . misc_feature unknown_1642 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2136853 2136873 . - . mRNA SPCC126.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.11c" ; systematic_id "SPCC126.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2137595 2138120 . + . mRNA SPCC126.12 ; ID "SPCC126.12" ; systematic_id "SPCC126.12" ; note "mRNA from AU008770" ;
chromosome3 GeneDB CDS_parts 2138121 2139127 . + . mRNA SPCC126.12 ; db_xref "SPD:14/14H02" ; systematic_id "SPCC126.12" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0006350; transcription" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL221C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human NIF3LI ortholog; date=20100728" ; gene "SPCC126.12" ; product "NGG1 interacting factor 3 family, implicated in trancription" ;
chromosome3 GeneDB CDS 2138121 2138334 . + . mRNA SPCC126.12 ; colour "10" ;
chromosome3 GeneDB CDS 2138388 2138702 . + . mRNA SPCC126.12 ; colour "10" ;
chromosome3 GeneDB CDS 2138755 2138925 . + . mRNA SPCC126.12 ; colour "10" ;
chromosome3 GeneDB CDS 2138991 2139127 . + . mRNA SPCC126.12 ; colour "10" ;
chromosome3 GeneDB misc_feature 2138335 2138340 . + . misc_feature unknown_1643 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2138377 2138387 . + . misc_feature unknown_1644 ; colour "6" ; note "ctcacaactag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2138703 2138708 . + . misc_feature unknown_1645 ; colour "6" ; note "gtgagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2138745 2138754 . + . misc_feature unknown_1646 ; colour "6" ; note "ttgattgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2138926 2138931 . + . misc_feature unknown_1647 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2138976 2138990 . + . misc_feature unknown_1648 ; colour "6" ; note "ctaacaacaatgtag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2139128 2139128 . + . mRNA SPCC126.12 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.12" ; systematic_id "SPCC126.12" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB tRNA 2139408 2139478 . - . tRNA SPCTRNAASP.08 ; systematic_id "SPCTRNAASP.08" ; GO "GO:0005737; cytoplasm
GO:0006414; translational elongation
GO:0033450; GTC codon-amino acid adaptor activity" ; gene "SPCTRNAASP.08" ; product "tRNA Asparagine" ; note "tRNA Asp anticodon GTC, Cove score 57.96" ;
chromosome3 GeneDB 3'-UTR 2139883 2140569 . - . mRNA SPCC126.13c ; ID "SPCC126.13c" ; systematic_id "SPCC126.13c" ; note "mRNA from AU006812" ;
chromosome3 GeneDB CDS_parts 2140570 2141174 . - . mRNA SPCC126.13c ; db_xref "SPD:42/42D07" ; systematic_id "SPCC126.13c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SAP18 ortholog; date=20100614" ; GO "GO:0000118; histone deactylase complex
GO:0006350; transcription
GO:0016575; histone deactylation
GO:0000790; nuclear chromatin" ; gene "SPCC126.13c" ; product "histone deacetylase complex subunit, SAP128 family (predicted)" ;
chromosome3 GeneDB CDS 2140570 2140843 . - . mRNA SPCC126.13c ; colour "7" ;
chromosome3 GeneDB CDS 2141011 2141174 . - . mRNA SPCC126.13c ; colour "7" ;
chromosome3 GeneDB misc_feature 2140844 2140860 . - . misc_feature unknown_1649 ; colour "6" ; note "ctaacgattaatcttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2141005 2141010 . - . misc_feature unknown_1650 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2141162 2141189 . + . mRNA SPCC126.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.14" ; systematic_id "SPCC126.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2141173 2141271 . - . mRNA SPCC126.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.13c" ; systematic_id "SPCC126.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2141190 2142266 . + . mRNA SPCC126.14 ; systematic_id "SPCC126.14" ; colour "7" ; gene "prp18 ||| SPCC126.14" ; Alias "prp18" ; db_xref "SPD:16/16F08" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp18" ; product "U5 snRNP-associated protein Prp18 (predicted)" ;
chromosome3 GeneDB CDS 2141190 2142146 . + . mRNA SPCC126.14 ; colour "7" ;
chromosome3 GeneDB CDS 2142192 2142266 . + . mRNA SPCC126.14 ; colour "7" ;
chromosome3 GeneDB misc_feature 2142147 2142152 . + . misc_feature unknown_1651 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2142173 2142191 . + . misc_feature unknown_1652 ; colour "6" ; note "ctaacctttcacatgttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2142267 2143307 . + . mRNA SPCC126.14 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.14" ; systematic_id "SPCC126.14" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2142317 2142678 . - . mRNA SPCC126.15c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC126.15c" ; systematic_id "SPCC126.15c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2142679 2143331 . - . mRNA SPCC126.15c ; systematic_id "SPCC126.15c" ; colour "7" ; gene "sec65 ||| SPCC126.15c" ; Alias "sec65" ; db_xref "SPD:42/42G01" ; GO "GO:0005786; signal recognition particle (sensu Eukaryota)
GO:0006617; SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec65" ; product "signal recognition particle subunit Sec65 (predicted)" ;
chromosome3 GeneDB CDS 2142679 2143055 . - . mRNA SPCC126.15c ; colour "7" ;
chromosome3 GeneDB CDS 2143109 2143331 . - . mRNA SPCC126.15c ; colour "7" ;
chromosome3 GeneDB misc_feature 2143056 2143075 . - . misc_feature unknown_1653 ; colour "6" ; note "ctaactgactgtgaatgtag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2143056 2143108 . - . intron SPCC126.15c ; systematic_id "SPCC126.15c" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 2143103 2143108 . - . misc_feature unknown_1654 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2143332 2143550 . - . mRNA SPCC126.15c ; ID "SPCC126.15c" ; systematic_id "SPCC126.15c" ; note "mRNA from AU007445" ;
chromosome3 GeneDB misc_feature 2143715 2143910 . + . misc_feature unknown_1655 ; note "nominal overlap with cosmid SPCC1620, EM:AL034491 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 2143718 2143910 . + . misc_feature unknown_1656 ; note "nominal overlap with cosmid SPCC126, EM:AL034490 S. pombe chromosome 3" ;
chromosome3 GeneDB 3'-UTR 2143949 2144170 . - . mRNA SPCC1620.01c ; ID "SPCC1620.01c" ; systematic_id "SPCC1620.01c" ; note "mRNA from AU009400" ;
chromosome3 GeneDB CDS_parts 2144171 2144924 . - . mRNA SPCC1620.01c ; systematic_id "SPCC1620.01c" ; colour "7" ; gene "lsm2 ||| SPCC1620.01c" ; Alias "lsm2" ; db_xref "SPD:09/09C05" ; GO "GO:0003723; RNA binding
GO:0006402; mRNA catabolism
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0006364; rRNA processing
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005688; snRNP U6" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsm2" ; product "U6 snRNP-associated protein core protein (predicted)" ;
chromosome3 GeneDB CDS 2144171 2144196 . - . mRNA SPCC1620.01c ; colour "7" ;
chromosome3 GeneDB CDS 2144255 2144357 . - . mRNA SPCC1620.01c ; colour "7" ;
chromosome3 GeneDB CDS 2144710 2144811 . - . mRNA SPCC1620.01c ; colour "7" ;
chromosome3 GeneDB CDS 2144865 2144924 . - . mRNA SPCC1620.01c ; colour "7" ;
chromosome3 GeneDB misc_feature 2144197 2144215 . - . misc_feature unknown_1657 ; colour "6" ; note "ttaactcactggtttttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2144197 2144254 . - . intron SPCC1620.01c ; systematic_id "SPCC1620.01c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2144249 2144254 . - . misc_feature unknown_1658 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2144358 2144372 . - . misc_feature unknown_1659 ; colour "6" ; note "ctaataatttattag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2144358 2144709 . - . intron SPCC1620.01c ; systematic_id "SPCC1620.01c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2144704 2144709 . - . misc_feature unknown_1660 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2144812 2144826 . - . misc_feature unknown_1661 ; colour "6" ; note "ttaaccaaactatag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2144812 2144864 . - . intron SPCC1620.01c ; systematic_id "SPCC1620.01c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2144859 2144864 . - . misc_feature unknown_1662 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2144923 2144956 . - . mRNA SPCC1620.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.01c" ; systematic_id "SPCC1620.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2145096 2145433 . + . LTR unknown_1663 ; note "Tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 2145761 2147258 . + . mRNA SPCC1620.02 ; systematic_id "SPCC1620.02" ; colour "12" ; gene "SPCC1620.02 ||| wtf23" ; Alias "wtf23" ; obsolete_name "wtf10" ; db_xref "SPD:24/24C07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf23" ; product "wtf element Wtf23" ;
chromosome3 GeneDB CDS 2145761 2145896 . + . mRNA SPCC1620.02 ; colour "12" ;
chromosome3 GeneDB CDS 2146113 2146442 . + . mRNA SPCC1620.02 ; colour "12" ;
chromosome3 GeneDB CDS 2146492 2146770 . + . mRNA SPCC1620.02 ; colour "12" ;
chromosome3 GeneDB CDS 2146807 2146998 . + . mRNA SPCC1620.02 ; colour "12" ;
chromosome3 GeneDB CDS 2147039 2147101 . + . mRNA SPCC1620.02 ; colour "12" ;
chromosome3 GeneDB CDS 2147152 2147258 . + . mRNA SPCC1620.02 ; colour "12" ;
chromosome3 GeneDB misc_feature 2145897 2145902 . + . misc_feature unknown_1664 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2146101 2146112 . + . misc_feature unknown_1665 ; colour "6" ; note "ctaacaatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2146443 2146448 . + . misc_feature unknown_1666 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2146480 2146491 . + . misc_feature unknown_1667 ; colour "6" ; note "ctaactcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2146771 2146776 . + . misc_feature unknown_1668 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 2146771 2146806 . + . intron SPCC1620.02 ; systematic_id "SPCC1620.02" ; note "Intron confirmed by EST" ;
chromosome3 GeneDB misc_feature 2146796 2146806 . + . misc_feature unknown_1669 ; colour "6" ; note "ctgacaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2146999 2147004 . + . misc_feature unknown_1670 ; colour "6" ; note "gttcgt, splice donor sequence" ;
chromosome3 GeneDB intron 2146999 2147038 . + . intron SPCC1620.02 ; systematic_id "SPCC1620.02" ; note "Intron confirmed by EST" ;
chromosome3 GeneDB misc_feature 2147026 2147038 . + . misc_feature unknown_1671 ; colour "6" ; note "ctaaccatgccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2147102 2147107 . + . misc_feature unknown_1672 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2147139 2147151 . + . misc_feature unknown_1673 ; colour "6" ; note "cttacccgactag, splice branch and acceptor" ;
chromosome3 GeneDB LTR 2147834 2148179 . + . LTR unknown_1674 ; note "Tf1-type LTR" ;
chromosome3 GeneDB LTR 2148154 2148502 . - . LTR unknown_1675 ; note "Tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 2148728 2149288 . + . mRNA SPCC1620.03 ; systematic_id "SPCC1620.03" ; colour "8" ; gene "SPCC1620.03 ||| mug163" ; db_xref "SPD:05/05H03" ; Alias "mug163" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug163" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 2148728 2149288 . + . mRNA SPCC1620.03 ; colour "8" ;
chromosome3 GeneDB repeat_region 2149309 2149342 . + . repeat_region unknown_1676 ; note "(at)17" ;
chromosome3 GeneDB CDS_parts 2149379 2150908 . - . mRNA SPCC1620.04c ; systematic_id "SPCC1620.04c" ; colour "10" ; gene "SPCC1620.04c ||| mug55" ; db_xref "SPD:44/44H04" ; Alias "mug55" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Cdc20/Fizzy subfamily; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=similar to S. pombe SPAC13G6.08; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug55" ; product "Cdc20/Fizzy subfamily WD repeat protein" ;
chromosome3 GeneDB CDS 2149379 2150908 . - . mRNA SPCC1620.04c ; colour "10" ;
chromosome3 GeneDB 5'-UTR 2152161 2152188 . + . mRNA SPCC1620.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.05" ; systematic_id "SPCC1620.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2152189 2153637 . + . mRNA SPCC1620.05 ; db_xref "SPD:44/44F11" ; systematic_id "SPCC1620.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human FH ortholog; date=20100217" ; GO "GO:0005968; Rab-protein gerenylgerenyltransferase complex
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0004663; Rab gerenylgerenyltransferase activity
GO:0018344; protein amino acid gerenylgerenylation" ; colour "7" ; product "Rab geranylgeranyltransferase alpha subunit (predicted)" ;
chromosome3 GeneDB CDS 2152189 2152191 . + . mRNA SPCC1620.05 ; colour "7" ;
chromosome3 GeneDB CDS 2152234 2152344 . + . mRNA SPCC1620.05 ; colour "7" ;
chromosome3 GeneDB CDS 2152391 2152518 . + . mRNA SPCC1620.05 ; colour "7" ;
chromosome3 GeneDB CDS 2152561 2152748 . + . mRNA SPCC1620.05 ; colour "7" ;
chromosome3 GeneDB CDS 2152869 2153090 . + . mRNA SPCC1620.05 ; colour "7" ;
chromosome3 GeneDB CDS 2153164 2153367 . + . mRNA SPCC1620.05 ; colour "7" ;
chromosome3 GeneDB CDS 2153459 2153637 . + . mRNA SPCC1620.05 ; colour "7" ;
chromosome3 GeneDB misc_feature 2152192 2152197 . + . misc_feature unknown_1677 ; colour "6" ; note "gtgagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2152217 2152233 . + . misc_feature unknown_1678 ; colour "6" ; note "ctaacaagtgtgcgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2152345 2152350 . + . misc_feature unknown_1679 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2152381 2152390 . + . misc_feature unknown_1680 ; colour "6" ; note "ttaactttttaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2152519 2152524 . + . misc_feature unknown_1681 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2152550 2152560 . + . misc_feature unknown_1682 ; colour "6" ; note "ttaacaaagaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2152749 2152754 . + . misc_feature unknown_1683 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2152856 2152868 . + . misc_feature unknown_1684 ; colour "6" ; note "ctaactagcctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2153091 2153096 . + . misc_feature unknown_1685 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2153148 2153163 . + . misc_feature unknown_1686 ; colour "6" ; note "ttaactcaacctgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2153368 2153373 . + . misc_feature unknown_1687 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2153444 2153458 . + . misc_feature unknown_1688 ; colour "6" ; note "ctaatattgtaccag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2153638 2153811 . + . mRNA SPCC1620.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.05" ; systematic_id "SPCC1620.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2153648 2153884 . - . mRNA SPCC1620.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.06c" ; systematic_id "SPCC1620.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2153885 2155070 . - . mRNA SPCC1620.06c ; db_xref "SPD:18/18H04" ; systematic_id "SPCC1620.06c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL068W and YER099C and YHL011C and YKL181W and YOL061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004749; ribose phosphate diphosphokinase activity
GO:0006189; 'de novo' IMP biosynthesis
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0000105; histidine biosynthesis
GO:0006166; purine ribonucleoside salvage
GO:0000162; tryptophan biosynthesis
GO:0005737; cytoplasm" ; gene "SPCC1620.06c" ; product "ribose-phosphate pyrophosphokinase (predicted)" ; EC_number "2.7.6.1" ;
chromosome3 GeneDB CDS 2153885 2154412 . - . mRNA SPCC1620.06c ; colour "7" ;
chromosome3 GeneDB CDS 2154481 2154847 . - . mRNA SPCC1620.06c ; colour "7" ;
chromosome3 GeneDB CDS 2155000 2155070 . - . mRNA SPCC1620.06c ; colour "7" ;
chromosome3 GeneDB misc_feature 2154413 2154428 . - . misc_feature unknown_1689 ; colour "6" ; note "ctaacatactatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2154475 2154480 . - . misc_feature unknown_1690 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2154848 2154865 . - . misc_feature unknown_1691 ; colour "6" ; note "ctaaaaatttgtaaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2154994 2154999 . - . misc_feature unknown_1692 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2155069 2155298 . - . mRNA SPCC1620.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.06c" ; systematic_id "SPCC1620.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2155627 2156303 . - . mRNA SPCC1620.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.07c" ; systematic_id "SPCC1620.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2156304 2157450 . - . mRNA SPCC1620.07c ; db_xref "SPD:18/18B04" ; systematic_id "SPCC1620.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR192W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human LNP ortholog; date=20100728" ; colour "10" ; gene "SPCC1620.07c" ; product "lunapark homolog" ;
chromosome3 GeneDB CDS 2156304 2157045 . - . mRNA SPCC1620.07c ; colour "10" ;
chromosome3 GeneDB CDS 2157130 2157371 . - . mRNA SPCC1620.07c ; colour "10" ;
chromosome3 GeneDB CDS 2157430 2157450 . - . mRNA SPCC1620.07c ; colour "10" ;
chromosome3 GeneDB misc_feature 2157046 2157064 . - . misc_feature unknown_1693 ; colour "6" ; note "ctaatttttgtttgtttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2157124 2157129 . - . misc_feature unknown_1694 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2157372 2157386 . - . misc_feature unknown_1695 ; colour "6" ; note "ctaacatgtgattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2157424 2157429 . - . misc_feature unknown_1696 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2157449 2157496 . - . mRNA SPCC1620.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.07c" ; systematic_id "SPCC1620.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2158747 2159089 . - . LTR unknown_1697 ; note "Tf1-type LTR" ;
chromosome3 GeneDB 5'-UTR 2159421 2159598 . + . mRNA SPCC1620.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.08" ; systematic_id "SPCC1620.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2159599 2160900 . + . mRNA SPCC1620.08 ; db_xref "KEGG:MAP00020; ||| SPD:44/44C01" ; systematic_id "SPCC1620.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR244C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006104; succinyl-CoA metabolism
GO:0006099; tricarboxylic acid cycle
GO:0005739; mitochondrion
GO:0004774; succinate-CoA ligase activity
GO:0042709; succinate-CoA ligase complex" ; gene "SPCC1620.08" ; product "succinate-CoA ligase beta subunit (predicted)" ; EC_number "6.2.1.-" ;
chromosome3 GeneDB CDS 2159599 2160900 . + . mRNA SPCC1620.08 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2160901 2161236 . + . mRNA SPCC1620.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.08" ; systematic_id "SPCC1620.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2161331 2163123 . - . mRNA SPCC1620.09c ; systematic_id "SPCC1620.09c" ; colour "7" ; gene "tfg1 ||| SPCC1620.09c" ; Alias "tfg1" ; db_xref "SPD:45/45C08" ; GO "GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity
GO:0005674; transcription factor TFIIF complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR186W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tfg1" ; product "transcription factor TFIIF complex alpha subunit Tfg1 (predicted)" ;
chromosome3 GeneDB CDS 2161331 2161515 . - . mRNA SPCC1620.09c ; colour "7" ;
chromosome3 GeneDB CDS 2161565 2162363 . - . mRNA SPCC1620.09c ; colour "7" ;
chromosome3 GeneDB CDS 2162405 2162500 . - . mRNA SPCC1620.09c ; colour "7" ;
chromosome3 GeneDB CDS 2162584 2163123 . - . mRNA SPCC1620.09c ; colour "7" ;
chromosome3 GeneDB misc_feature 2162364 2162376 . - . misc_feature unknown_1698 ; colour "6" ; note "ctaacccatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2162399 2162404 . - . misc_feature unknown_1699 ; colour "6" ; note "gtcagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2162501 2162512 . - . misc_feature unknown_1700 ; colour "6" ; note "cttactctatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2162578 2162583 . - . misc_feature unknown_1701 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 2163205 2164165 . + . mRNA SPCC1620.10 ; systematic_id "SPCC1620.10" ; colour "2" ; gene "cwf26 ||| SPCC1620.10" ; Alias "cwf26" ; db_xref "SPD:12/12G07" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL174W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf26" ; product "complexed with Cdc5 protein Cwf26" ;
chromosome3 GeneDB CDS 2163205 2164118 . + . mRNA SPCC1620.10 ; colour "2" ;
chromosome3 GeneDB CDS 2164159 2164165 . + . mRNA SPCC1620.10 ; colour "2" ;
chromosome3 GeneDB CDS_parts 2165032 2167636 . + . mRNA SPCC1620.11 ; systematic_id "SPCC1620.11" ; colour "2" ; gene "SPCC1620.11 ||| mug87 ||| nup97" ; Alias "nup97" ; db_xref "SPD:38/38F01" ; synonym "mug87" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0005643; nuclear pore
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR002W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17846589; date=20080104 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nup97" ; product "nucleoporin Nic96 homolog" ;
chromosome3 GeneDB CDS 2165032 2165225 . + . mRNA SPCC1620.11 ; colour "2" ;
chromosome3 GeneDB CDS 2165275 2167636 . + . mRNA SPCC1620.11 ; colour "2" ;
chromosome3 GeneDB misc_feature 2165226 2165231 . + . misc_feature unknown_1702 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 2165226 2165274 . + . intron SPCC1620.11 ; db_xref "PMID:17846589" ; systematic_id "SPCC1620.11" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2165259 2165274 . + . misc_feature unknown_1703 ; colour "6" ; note "ctaatgaacgatatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2167637 2168772 . + . mRNA SPCC1620.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.11" ; systematic_id "SPCC1620.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2167673 2167798 . - . mRNA SPCC1620.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.12c" ; systematic_id "SPCC1620.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2167799 2169586 . - . mRNA SPCC1620.12c ; db_xref "SPD:45/45H04" ; systematic_id "SPCC1620.12c" ; colour "7" ; GO "GO:0005097; Rab GTPase activator activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005798; Golgi-associated vesicle
GO:0005886; plasma membrane
GO:0005829; cytosol" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL249C and YMR192W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC1620.12c" ; product "GTPase activating protein (predicted)" ;
chromosome3 GeneDB CDS 2167799 2169586 . - . mRNA SPCC1620.12c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2169585 2170036 . - . mRNA SPCC1620.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.12c" ; systematic_id "SPCC1620.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2171357 2171467 . + . mRNA SPCC1620.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.13" ; systematic_id "SPCC1620.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2171468 2172316 . + . mRNA SPCC1620.13 ; db_xref "SPD:11/11B06" ; systematic_id "SPCC1620.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; gene "SPCC1620.13" ; product "phosphoglycerate mutase family (predicted)" ;
chromosome3 GeneDB CDS 2171468 2172316 . + . mRNA SPCC1620.13 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2172317 2172403 . + . mRNA SPCC1620.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.13" ; systematic_id "SPCC1620.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2172510 2172622 . - . mRNA SPCC1620.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.14c" ; systematic_id "SPCC1620.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2172623 2177665 . - . mRNA SPCC1620.14c ; systematic_id "SPCC1620.14c" ; colour "2" ; gene "snf22 ||| SPCC1620.14c" ; Alias "snf22" ; db_xref "SPD:31/31B02" ; synonym "SPCC830.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to 2-DOG; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=AT hook protein; date=19700101 ||| term=bromodomain; date=19700101 ||| term=orthologous to S. cerevisiae YOR290C and YIL126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SMARCA4 ortholog; date=20100218 ||| term=disease associated, cancer; date=20100218 ||| term=gene expression, transcriptionally regulates genes involved in glucose uptake; qualifier=represses; db_xref=PMID:18622392; cv=gene_ex; date=20080729 ||| term=gene expression, transcriptionally regulates genes involved in iron uptake; qualifier=represses; db_xref=PMID:18622392; cv=gene_ex; date=20080729 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110" ; GO "GO:0016514; SWI/SNF complex
GO:0016585; chromatin remodeling complex
GO:0000790; nuclear chromatin
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0005524; ATP binding
GO:0004003; ATP dependent DNA helicase activity
GO:0003677; DNA binding
GO:0016251; general RNA polymerase II transcription factor activity
GO:0043044; ATP-dependent chromatin remodeling
GO:0007131; meiotic recombination
GO:0006338; chromatin remodeling" ; primary_name "snf22" ; product "ATP-dependent DNA helicase Snf22" ;
chromosome3 GeneDB CDS 2172623 2177665 . - . mRNA SPCC1620.14c ; colour "2" ;
chromosome3 GeneDB misc_feature 2173817 2173915 . + . misc_feature unknown_1704 ; note "nominal overlap with cosmid SPCC830 and cosmid SPCC1620" ;
chromosome3 GeneDB 5'-UTR 2177664 2178068 . - . mRNA SPCC1620.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1620.14c" ; systematic_id "SPCC1620.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 2178524 2178946 . + . misc_RNA SPNCRNA.123 ; systematic_id "SPNCRNA.123" ; controlled_curation "term=; qualifier=predicted; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; date=20050412" ; gene "SPNCRNA.123" ; product "non-coding RNA (predicted)" ; note "mRNA from spc07037; not associated with an ORF" ;
chromosome3 GeneDB LTR 2180475 2180832 . + . LTR unknown_1705 ; note "TF1 LTR" ;
chromosome3 GeneDB CDS_parts 2181204 2182504 . + . mRNA SPCC830.02 ; systematic_id "SPCC830.02" ; colour "13" ; gene "wtf24 ||| SPCC830.02" ; Alias "wtf24" ; db_xref "SPD:22/22F03" ; pseudo "_no_value" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf24" ; product "pseudogene wtf element Wtf24" ;
chromosome3 GeneDB CDS 2181204 2181342 . + . mRNA SPCC830.02 ; colour "13" ;
chromosome3 GeneDB CDS 2181510 2181758 . + . mRNA SPCC830.02 ; colour "13" ;
chromosome3 GeneDB CDS 2181808 2182031 . + . mRNA SPCC830.02 ; colour "13" ;
chromosome3 GeneDB CDS 2182077 2182371 . + . mRNA SPCC830.02 ; colour "13" ;
chromosome3 GeneDB CDS 2182422 2182504 . + . mRNA SPCC830.02 ; colour "13" ;
chromosome3 GeneDB misc_feature 2181343 2181348 . + . misc_feature unknown_1706 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2181759 2181764 . + . misc_feature unknown_1707 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2181796 2181807 . + . misc_feature unknown_1708 ; colour "6" ; note "ctaactcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2182032 2182037 . + . misc_feature unknown_1709 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2182066 2182076 . + . misc_feature unknown_1710 ; colour "6" ; note "ctaacacgcag, splice branch and acceptor" ;
chromosome3 GeneDB 5'-UTR 2183620 2183806 . + . mRNA SPCC830.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.03" ; systematic_id "SPCC830.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2183807 2186094 . + . mRNA SPCC830.03 ; db_xref "SPD:28/28C02" ; systematic_id "SPCC830.03" ; colour "7" ; GO "GO:0005634; nucleus
GO:0051731; polynucleotide kinase activity
GO:0006363; termination of RNA polymerase I transcription
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL035W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human NOL9 ortholog; date=20100906" ; gene "SPCC830.03" ; product "polynucleotide kinase Grc3 (predicted)" ;
chromosome3 GeneDB CDS 2183807 2183840 . + . mRNA SPCC830.03 ; colour "7" ;
chromosome3 GeneDB CDS 2183918 2186094 . + . mRNA SPCC830.03 ; colour "7" ;
chromosome3 GeneDB misc_feature 2183841 2183846 . + . misc_feature unknown_1711 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2183900 2183917 . + . misc_feature unknown_1712 ; colour "6" ; note "ctaacagttctatgacag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2186095 2187362 . + . mRNA SPCC830.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.03" ; systematic_id "SPCC830.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2186723 2187154 . - . mRNA SPCC830.04c ; systematic_id "SPCC830.04c" ; colour "8" ; gene "SPCC830.04c ||| mug128" ; db_xref "SPD:03/03F04" ; Alias "mug128" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug128" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 2186723 2187154 . - . mRNA SPCC830.04c ; colour "8" ;
chromosome3 GeneDB 3'-UTR 2188075 2188534 . - . mRNA SPCC830.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.05c" ; systematic_id "SPCC830.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2188535 2190729 . - . mRNA SPCC830.05c ; systematic_id "SPCC830.05c" ; colour "2" ; gene "SPCC830.05c ||| epl1" ; Alias "epl1" ; db_xref "SPD:37/37H06" ; GO "GO:0016573; histone acetylation
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0006281; DNA repair
GO:0035267; NuA4 histone acetyltransferase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "epl1" ; product "NuA4 histone acetyltransferase complex Epl1" ;
chromosome3 GeneDB CDS 2188535 2190040 . - . mRNA SPCC830.05c ; colour "2" ;
chromosome3 GeneDB CDS 2190562 2190729 . - . mRNA SPCC830.05c ; colour "2" ;
chromosome3 GeneDB misc_feature 2190041 2190054 . - . misc_feature unknown_1713 ; colour "6" ; note "ctaacaatttatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2190556 2190561 . - . misc_feature unknown_1714 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2190728 2190827 . - . mRNA SPCC830.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.05c" ; systematic_id "SPCC830.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2192091 2192203 . + . mRNA SPCC830.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.06" ; systematic_id "SPCC830.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2192204 2193036 . + . mRNA SPCC830.06 ; db_xref "SPD:10/10G10" ; systematic_id "SPCC830.06" ; colour "7" ; GO "GO:0005955; calcineurin complex
GO:0005737; cytoplasm
GO:0005509; calcium ion binding
GO:0008597; calcium-dependent protein serine/threonine phosphatase regulator activity
GO:0007165; signal transduction
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YKL190W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC830.06" ; product "calcineurin regulatory subunit (predicted)" ;
chromosome3 GeneDB CDS 2192204 2192255 . + . mRNA SPCC830.06 ; colour "7" ;
chromosome3 GeneDB CDS 2192449 2192685 . + . mRNA SPCC830.06 ; colour "7" ;
chromosome3 GeneDB CDS 2192748 2192860 . + . mRNA SPCC830.06 ; colour "7" ;
chromosome3 GeneDB CDS 2192914 2193036 . + . mRNA SPCC830.06 ; colour "7" ;
chromosome3 GeneDB misc_feature 2192256 2192261 . + . misc_feature unknown_1715 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2192429 2192448 . + . misc_feature unknown_1716 ; colour "6" ; note "ctaacgttcattgtatctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2192686 2192691 . + . misc_feature unknown_1717 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2192726 2192747 . + . misc_feature unknown_1718 ; colour "6" ; note "ctaacattattgttttatctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2192861 2192866 . + . misc_feature unknown_1719 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2192894 2192913 . + . misc_feature unknown_1720 ; colour "6" ; note "ctgactcctattataactag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2193037 2193303 . + . mRNA SPCC830.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.06" ; systematic_id "SPCC830.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2193575 2193952 . - . mRNA SPCC830.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.07c" ; systematic_id "SPCC830.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2193953 2195092 . - . mRNA SPCC830.07c ; systematic_id "SPCC830.07c" ; colour "2" ; gene "psi1 ||| psi ||| SPCC830.07c" ; Alias "psi1" ; db_xref "SPD:18/18A04" ; synonym "psi" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0030544; Hsp70 protein binding
GO:0051082; unfolded protein binding
GO:0006413; translational initiation
GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "psi1" ; product "DNAJ domain protein, involved in translation initiation Psi1" ;
chromosome3 GeneDB CDS 2193953 2195092 . - . mRNA SPCC830.07c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 2195091 2195500 . - . mRNA SPCC830.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.07c" ; systematic_id "SPCC830.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2195886 2196307 . - . mRNA SPCC830.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.08c" ; systematic_id "SPCC830.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2196308 2197112 . - . mRNA SPCC830.08c ; systematic_id "SPCC830.08c" ; colour "2" ; db_xref "SPD:10/10C03" ; Alias "yop1" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0005783; endoplasmic reticulum
GO:0032153; cell division site
GO:0034613; cellular protein localization
GO:0071786; endoplasmic reticulum tubular network organization
; site selection involved in cell cycle cytokinesis
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, familial adenomatous polyposis; date=20060801 ||| term=orthologous to S. cerevisiae YPR028W; date=19700101 ||| term=human REEP5/REEP6 ortholog; date=20080822 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cytokinesis defects; db_xref=PMID:20434336; cv=phenotype; date=20100517" ; primary_name "yop1" ; product "ER membrane protein DP1/Yop1" ;
chromosome3 GeneDB CDS 2196308 2196522 . - . mRNA SPCC830.08c ; colour "2" ;
chromosome3 GeneDB CDS 2196646 2196928 . - . mRNA SPCC830.08c ; colour "2" ;
chromosome3 GeneDB CDS 2197062 2197112 . - . mRNA SPCC830.08c ; colour "2" ;
chromosome3 GeneDB misc_feature 2196523 2196546 . - . misc_feature unknown_1721 ; colour "6" ; note "ctaactggggattttcctttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2196640 2196645 . - . misc_feature unknown_1722 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2196929 2196945 . - . misc_feature unknown_1723 ; colour "6" ; note "ctaacttttttttccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2197056 2197061 . - . misc_feature unknown_1724 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2197111 2197206 . - . mRNA SPCC830.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.08c" ; systematic_id "SPCC830.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2197811 2199273 . - . mRNA SPCC830.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.09c" ; systematic_id "SPCC830.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2199274 2199693 . - . mRNA SPCC830.09c ; db_xref "SPD:03/03D06" ; systematic_id "SPCC830.09c" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0008033; tRNA processing
GO:0005655; nucleolar ribonuclease P complex
GO:0000172; ribonuclease MRP complex
GO:0000171; ribonuclease MRP activity
GO:0004526; ribonuclease P activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC830.09c" ; product "RNase P and RNase MRP subunit (predicted)" ;
chromosome3 GeneDB CDS 2199274 2199693 . - . mRNA SPCC830.09c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2199692 2199846 . - . mRNA SPCC830.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.09c" ; systematic_id "SPCC830.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2201442 2201517 . + . mRNA SPCC830.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.10" ; systematic_id "SPCC830.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2201518 2202513 . + . mRNA SPCC830.10 ; db_xref "SPD:14/14E12" ; systematic_id "SPCC830.10" ; colour "7" ; GO "GO:0006974; response to DNA damage stimulus
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0047429; nucleoside-triphosphate pyrophosphatase activity
GO:0009204; deoxyribonucleoside triphosphate catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC830.10" ; product "nucleoside triphosphatase (predicted)" ;
chromosome3 GeneDB CDS 2201518 2201524 . + . mRNA SPCC830.10 ; colour "7" ;
chromosome3 GeneDB CDS 2201629 2201730 . + . mRNA SPCC830.10 ; colour "7" ;
chromosome3 GeneDB CDS 2201788 2201852 . + . mRNA SPCC830.10 ; colour "7" ;
chromosome3 GeneDB CDS 2201989 2202062 . + . mRNA SPCC830.10 ; colour "7" ;
chromosome3 GeneDB CDS 2202109 2202140 . + . mRNA SPCC830.10 ; colour "7" ;
chromosome3 GeneDB CDS 2202182 2202351 . + . mRNA SPCC830.10 ; colour "7" ;
chromosome3 GeneDB CDS 2202397 2202513 . + . mRNA SPCC830.10 ; colour "7" ;
chromosome3 GeneDB misc_feature 2201525 2201530 . + . misc_feature unknown_1725 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2201606 2201628 . + . misc_feature unknown_1726 ; colour "6" ; note "ctaacaagattgctgtcccatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2201731 2201736 . + . misc_feature unknown_1727 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2201769 2201787 . + . misc_feature unknown_1728 ; colour "6" ; note "ctaacatgatgttttaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2201853 2201858 . + . misc_feature unknown_1729 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2201976 2201988 . + . misc_feature unknown_1730 ; colour "6" ; note "ctaacgctaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2202063 2202068 . + . misc_feature unknown_1731 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2202096 2202108 . + . misc_feature unknown_1732 ; colour "6" ; note "ttaacaaaagtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2202141 2202146 . + . misc_feature unknown_1733 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2202168 2202181 . + . misc_feature unknown_1734 ; colour "6" ; note "ctaactagtataag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2202352 2202357 . + . misc_feature unknown_1735 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2202383 2202396 . + . misc_feature unknown_1736 ; colour "6" ; note "ttaatattccttag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2202514 2202763 . + . mRNA SPCC830.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.10" ; systematic_id "SPCC830.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2202815 2203183 . - . mRNA SPCC830.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.11c" ; systematic_id "SPCC830.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2203184 2203806 . - . mRNA SPCC830.11c ; db_xref "SPD:07/07A09" ; systematic_id "SPCC830.11c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005669; transcription factor TFIID complex
GO:0017111; nucleoside-triphosphatase activity
GO:0030490; processing of 20S pre-rRNA" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDL166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC830.11c" ; product "transcription factor TFIID complex nucleoside- triphosphatase (predicted)" ;
chromosome3 GeneDB CDS 2203184 2203658 . - . mRNA SPCC830.11c ; colour "7" ;
chromosome3 GeneDB CDS 2203754 2203806 . - . mRNA SPCC830.11c ; colour "7" ;
chromosome3 GeneDB misc_feature 2203659 2203674 . - . misc_feature unknown_1737 ; colour "6" ; note "ctaactttttccctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2203748 2203753 . - . misc_feature unknown_1738 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2203805 2203918 . - . mRNA SPCC830.11c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC830.11c" ; systematic_id "SPCC830.11c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2204136 2204297 . + . mRNA SPCC1919.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.01" ; systematic_id "SPCC1919.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2204298 2205735 . + . mRNA SPCC1919.01 ; systematic_id "SPCC1919.01" ; colour "2" ; gene "SPCC830.12 ||| SPCC1919.01 ||| ppk34" ; Alias "ppk34" ; db_xref "SPD:44/44H06" ; synonym "SPCC830.12" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0007165; signal transduction
GO:2000248; negative regulation of establishment or maintenence of bipolar cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe Ssp1; date=20070523 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk34" ; product "serine/threonine protein kinase Ppk34" ;
chromosome3 GeneDB CDS 2204298 2204495 . + . mRNA SPCC1919.01 ; colour "2" ;
chromosome3 GeneDB CDS 2204616 2204868 . + . mRNA SPCC1919.01 ; colour "2" ;
chromosome3 GeneDB CDS 2204966 2205085 . + . mRNA SPCC1919.01 ; colour "2" ;
chromosome3 GeneDB CDS 2205138 2205295 . + . mRNA SPCC1919.01 ; colour "2" ;
chromosome3 GeneDB CDS 2205336 2205484 . + . mRNA SPCC1919.01 ; colour "2" ;
chromosome3 GeneDB CDS 2205549 2205735 . + . mRNA SPCC1919.01 ; colour "2" ;
chromosome3 GeneDB misc_feature 2204496 2204501 . + . misc_feature unknown_1739 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2204869 2204874 . + . misc_feature unknown_1740 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2204931 2205030 . + . misc_feature unknown_1741 ; note "nominal overlap with cosmid SPCC830 and cosmid SPCC1919" ;
chromosome3 GeneDB misc_feature 2204952 2204965 . + . misc_feature unknown_1742 ; colour "6" ; note "ctaacaacaattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2205086 2205091 . + . misc_feature unknown_1743 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2205118 2205137 . + . misc_feature unknown_1744 ; colour "6" ; note "ttaatcttgttcccatatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2205296 2205301 . + . misc_feature unknown_1745 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2205323 2205335 . + . misc_feature unknown_1746 ; colour "6" ; note "ttaacctctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2205485 2205490 . + . misc_feature unknown_1747 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2205527 2205548 . + . misc_feature unknown_1748 ; colour "6" ; note "ctaatatatataacaattatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2205736 2206069 . + . mRNA SPCC1919.01 ; Alias "ppk34" ; ID "SPCC1919.01" ; systematic_id "SPCC1919.01" ; primary_name "ppk34" ; note "mRNA from AU007054" ;
chromosome3 GeneDB 5'-UTR 2206281 2206372 . + . mRNA SPCC1919.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.02" ; systematic_id "SPCC1919.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2206373 2207470 . + . mRNA SPCC1919.02 ; db_xref "SPD:17/17C02" ; systematic_id "SPCC1919.02" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0006506; GPI anchor biosynthesis
GO:0000030; mannosyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1919.02" ; product "pig-X (predicted)" ;
chromosome3 GeneDB CDS 2206373 2206497 . + . mRNA SPCC1919.02 ; colour "7" ;
chromosome3 GeneDB CDS 2206541 2206604 . + . mRNA SPCC1919.02 ; colour "7" ;
chromosome3 GeneDB CDS 2206661 2207470 . + . mRNA SPCC1919.02 ; colour "7" ;
chromosome3 GeneDB misc_feature 2206498 2206503 . + . misc_feature unknown_1749 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2206525 2206540 . + . misc_feature unknown_1750 ; colour "6" ; note "ctaataccatttcaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2206605 2206610 . + . misc_feature unknown_1751 ; colour "6" ; note "gtaata, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2206647 2206660 . + . misc_feature unknown_1752 ; colour "6" ; note "ctaatttgtactag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2207485 2207735 . - . mRNA SPCC1919.03c ; ID "SPCC1919.03c" ; systematic_id "SPCC1919.03c" ; note "mRNA from SPD138" ;
chromosome3 GeneDB CDS_parts 2207736 2208999 . - . mRNA SPCC1919.03c ; db_xref "SPD:20/20C01" ; systematic_id "SPCC1919.03c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005886; plasma membrane
GO:0019887; protein kinase regulator activity
GO:0042149; cellular response to glucose starvation
GO:0006468; protein amino acid phosphorylation
GO:0007165; signal transduction
GO:0005634; nucleus
GO:0031588; AMP-activated protein kinase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, N-myristoylated; cv=pt_mod; evidence=ISS; db_xref=PMID:12562756; date=19700101 ||| term=orthologous to S. cerevisiae YGL208W and YER027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1919.03c" ; product "AMP-activated protein kinase beta subunit (predicted)" ;
chromosome3 GeneDB CDS 2207736 2207774 . - . mRNA SPCC1919.03c ; colour "7" ;
chromosome3 GeneDB CDS 2207823 2208291 . - . mRNA SPCC1919.03c ; colour "7" ;
chromosome3 GeneDB CDS 2208388 2208490 . - . mRNA SPCC1919.03c ; colour "7" ;
chromosome3 GeneDB CDS 2208661 2208921 . - . mRNA SPCC1919.03c ; colour "7" ;
chromosome3 GeneDB CDS 2208975 2208999 . - . mRNA SPCC1919.03c ; colour "7" ;
chromosome3 GeneDB misc_feature 2207775 2207792 . - . misc_feature unknown_1753 ; colour "6" ; note "ctaactttgtttccccag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2207775 2207822 . - . intron SPCC1919.03c ; systematic_id "SPCC1919.03c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2207817 2207822 . - . misc_feature unknown_1754 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2208292 2208311 . - . misc_feature unknown_1755 ; colour "6" ; note "ctaactttttcgccaaatag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2208292 2208387 . - . intron SPCC1919.03c ; systematic_id "SPCC1919.03c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2208382 2208387 . - . misc_feature unknown_1756 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2208491 2208510 . - . misc_feature unknown_1757 ; colour "6" ; note "ttaattacttacacatatag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2208491 2208660 . - . intron SPCC1919.03c ; systematic_id "SPCC1919.03c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2208655 2208660 . - . misc_feature unknown_1758 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2208922 2208936 . - . misc_feature unknown_1759 ; colour "6" ; note "ctaatttaatgttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2208922 2208974 . - . intron SPCC1919.03c ; systematic_id "SPCC1919.03c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2208969 2208974 . - . misc_feature unknown_1760 ; colour "6" ; note "gtaatg, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2209000 2209022 . - . mRNA SPCC1919.03c ; ID "SPCC1919.03c" ; systematic_id "SPCC1919.03c" ; note "mRNA from SPD138" ;
chromosome3 GeneDB LTR 2210258 2210588 . - . LTR unknown_1761 ; colour "4" ; note "partially degraded lone tf2-typre LTR" ;
chromosome3 GeneDB LTR 2210640 2210988 . - . LTR unknown_1762 ; colour "4" ; note "Lone tf2-type LTR" ;
chromosome3 GeneDB CDS_parts 2211103 2211873 . + . mRNA SPCC1919.04 ; db_xref "SPD:09/09E09" ; systematic_id "SPCC1919.04" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1919.04" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 2211103 2211873 . + . mRNA SPCC1919.04 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 2211874 2212441 . + . mRNA SPCC1919.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.04" ; systematic_id "SPCC1919.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2212718 2212759 . + . mRNA SPCC1919.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.05" ; systematic_id "SPCC1919.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2212760 2216929 . + . mRNA SPCC1919.05 ; db_xref "SPD:30/30G01" ; systematic_id "SPCC1919.05" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0006402; mRNA catabolism
GO:0005737; cytoplasm
GO:0017148; negative regulation of translation
GO:0055087; Ski complex" ; gene "SPCC1919.05 ||| ski3" ; product "Ski complex TPR repeat subunit Ski3 (predicted)" ; reserved_name "ski3" ;
chromosome3 GeneDB CDS 2212760 2216929 . + . mRNA SPCC1919.05 ; colour "7" ;
chromosome3 GeneDB misc_RNA 2215633 2217861 . - . misc_RNA SPNCRNA.584 ; db_xref "PMID:18488015" ; systematic_id "SPNCRNA.584" ; synonym "SPNG2AF58" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430" ; product "antisense RNA (predicted)" ;
chromosome3 GeneDB 3'-UTR 2216930 2218217 . + . mRNA SPCC1919.05 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.05" ; systematic_id "SPCC1919.05" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2219127 2220191 . - . mRNA SPCC1919.06c ; systematic_id "SPCC1919.06c" ; colour "12" ; db_xref "SPD:51/51C11" ; obsolete_name "wtf9-pseudo" ; Alias "wtf25" ; synonym "SPCC1919.06c" ; primary_name "wtf25" ; product "wtf element" ;
chromosome3 GeneDB CDS 2219127 2219203 . - . mRNA SPCC1919.06c ; colour "12" ;
chromosome3 GeneDB CDS 2219264 2219317 . - . mRNA SPCC1919.06c ; colour "12" ;
chromosome3 GeneDB CDS 2219358 2219591 . - . mRNA SPCC1919.06c ; colour "12" ;
chromosome3 GeneDB CDS 2219641 2219886 . - . mRNA SPCC1919.06c ; colour "12" ;
chromosome3 GeneDB CDS 2220053 2220191 . - . mRNA SPCC1919.06c ; colour "12" ;
chromosome3 GeneDB misc_feature 2219204 2219217 . - . misc_feature unknown_1763 ; colour "6" ; note "ctaatcatcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2219258 2219263 . - . misc_feature unknown_1764 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2219318 2219329 . - . misc_feature unknown_1765 ; colour "6" ; note "ctgacaacatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2219352 2219357 . - . misc_feature unknown_1766 ; colour "6" ; note "gtttgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2219592 2219603 . - . misc_feature unknown_1767 ; colour "6" ; note "ctaactcatgag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2219635 2219640 . - . misc_feature unknown_1768 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2219887 2219899 . - . misc_feature unknown_1769 ; colour "6" ; note "ttaatttaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2220047 2220052 . - . misc_feature unknown_1770 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB LTR 2220430 2220754 . - . LTR unknown_1771 ; colour "4" ; note "lone partially degraded tf2-type LTR" ;
chromosome3 GeneDB 5'-UTR 2221570 2221582 . + . mRNA SPCC1919.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.07" ; systematic_id "SPCC1919.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2221583 2222203 . + . mRNA SPCC1919.07 ; db_xref "SPD:07/07A06" ; systematic_id "SPCC1919.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1919.07" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 2221583 2222203 . + . mRNA SPCC1919.07 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 2221979 2222222 . - . mRNA SPCC1919.08c ; Alias "mrpl33" ; ID "SPCC1919.08c" ; systematic_id "SPCC1919.08c" ; primary_name "mrpl33" ; note "mRNA from AU012440" ;
chromosome3 GeneDB CDS_parts 2222223 2222571 . - . mRNA SPCC1919.08c ; systematic_id "SPCC1919.08c" ; colour "7" ; gene "SPCC1919.08c ||| mrpl33" ; Alias "mrpl33" ; db_xref "SPD:02/02C01" ; GO "GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR286W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl33" ; product "mitochondrial ribosomal protein subunit YmL33 (predicted)" ;
chromosome3 GeneDB CDS 2222223 2222466 . - . mRNA SPCC1919.08c ; colour "7" ;
chromosome3 GeneDB CDS 2222522 2222571 . - . mRNA SPCC1919.08c ; colour "7" ;
chromosome3 GeneDB misc_feature 2222467 2222482 . - . misc_feature unknown_1772 ; colour "6" ; note "ctaaccaatattttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2222467 2222521 . - . intron SPCC1919.08c ; systematic_id "SPCC1919.08c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2222516 2222521 . - . misc_feature unknown_1773 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB LTR 2222680 2223022 . - . LTR unknown_1774 ; colour "4" ; note "partially degraded tf1-type LTR" ;
chromosome3 GeneDB CDS_parts 2223154 2224257 . + . mRNA SPCC1919.09 ; systematic_id "SPCC1919.09" ; colour "2" ; gene "tif6 ||| SPCC1919.09" ; db_xref "SPD:17/17D03" ; Alias "tif6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR016C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "tif6" ; product "translation initiation factor eIF6" ;
chromosome3 GeneDB CDS 2223154 2223188 . + . mRNA SPCC1919.09 ; colour "2" ;
chromosome3 GeneDB CDS 2223243 2223314 . + . mRNA SPCC1919.09 ; colour "2" ;
chromosome3 GeneDB CDS 2223630 2224257 . + . mRNA SPCC1919.09 ; colour "2" ;
chromosome3 GeneDB misc_feature 2223189 2223194 . + . misc_feature unknown_1775 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2223229 2223242 . + . misc_feature unknown_1776 ; colour "6" ; note "ttaacaaattatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2223315 2223320 . + . misc_feature unknown_1777 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2223614 2223629 . + . misc_feature unknown_1778 ; colour "6" ; note "ctaacttttataacag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2224258 2224470 . + . mRNA SPCC1919.09 ; Alias "tif6" ; ID "SPCC1919.09" ; systematic_id "SPCC1919.09" ; primary_name "tif6" ; note "mRNA from AU012714" ;
chromosome3 GeneDB 3'-UTR 2224882 2225047 . - . mRNA SPCC1919.10c ; Alias "myo52" ; ID "SPCC1919.10c" ; systematic_id "SPCC1919.10c" ; primary_name "myo52" ; note "mRNA from SPD250" ;
chromosome3 GeneDB CDS_parts 2225048 2229731 . - . mRNA SPCC1919.10c ; systematic_id "SPCC1919.10c" ; colour "2" ; gene "myo52 ||| SPCC1919.10c" ; Alias "myo52" ; db_xref "SPD:31/31A01" ; GO "GO:0033205; cell cycle cytokinesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0051285; cell cortex of cell tip
GO:0031097; medial ring
GO:0000146; microfilament motor activity
GO:0034613; cellular protein localization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=IQ domain; date=19700101 ||| term=orthologous to S. cerevisiae YAL029C and YOR326W; date=20070726 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "myo52" ; product "myosin type V" ;
chromosome3 GeneDB CDS 2225048 2229460 . - . mRNA SPCC1919.10c ; colour "2" ;
chromosome3 GeneDB CDS 2229535 2229643 . - . mRNA SPCC1919.10c ; colour "2" ;
chromosome3 GeneDB CDS 2229703 2229731 . - . mRNA SPCC1919.10c ; colour "2" ;
chromosome3 GeneDB misc_feature 2229461 2229478 . - . misc_feature unknown_1779 ; colour "6" ; note "ctaatgtgatcttgttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2229529 2229534 . - . misc_feature unknown_1780 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2229644 2229668 . - . misc_feature unknown_1781 ; colour "6" ; note "ctaatgttgttgttgcgaaatgtag, splice branch and accepto r" ;
chromosome3 GeneDB misc_feature 2229697 2229702 . - . misc_feature unknown_1782 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2229730 2229930 . - . mRNA SPCC1919.10c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.10c" ; systematic_id "SPCC1919.10c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2230367 2230688 . - . LTR unknown_1783 ; colour "4" ; note "tf2-type lone LTR" ;
chromosome3 GeneDB misc_RNA 2230868 2231410 . + . misc_RNA SPNCRNA.513 ; db_xref "PMID:18488015" ; synonym "SPNG2585" ; systematic_id "SPNCRNA.513" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 3'-UTR 2231583 2233447 . - . mRNA SPCC1919.12c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.12c" ; systematic_id "SPCC1919.12c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2231761 2233381 . + . mRNA SPCC1919.11 ; systematic_id "SPCC1919.11" ; colour "10" ; gene "SPCC1919.11 ||| mug137" ; Alias "mug137" ; db_xref "SPD:25/25H12" ; GO "GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=BAR domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human SH3GL1 and SH3GL2 and SH3GL3 ortholog; date=20100217" ; primary_name "mug137" ; product "BAR adaptor protein" ;
chromosome3 GeneDB CDS 2231761 2231786 . + . mRNA SPCC1919.11 ; colour "10" ;
chromosome3 GeneDB CDS 2231853 2231862 . + . mRNA SPCC1919.11 ; colour "10" ;
chromosome3 GeneDB CDS 2231970 2232045 . + . mRNA SPCC1919.11 ; colour "10" ;
chromosome3 GeneDB CDS 2232089 2232136 . + . mRNA SPCC1919.11 ; colour "10" ;
chromosome3 GeneDB CDS 2232194 2232298 . + . mRNA SPCC1919.11 ; colour "10" ;
chromosome3 GeneDB CDS 2232337 2232895 . + . mRNA SPCC1919.11 ; colour "10" ;
chromosome3 GeneDB CDS 2232943 2233381 . + . mRNA SPCC1919.11 ; colour "10" ;
chromosome3 GeneDB misc_feature 2231787 2231792 . + . misc_feature unknown_1784 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2231835 2231852 . + . misc_feature unknown_1785 ; colour "6" ; note "ttgaccccttttttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2231863 2231868 . + . misc_feature unknown_1786 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2231957 2231969 . + . misc_feature unknown_1787 ; colour "6" ; note "ctgaccttattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2232046 2232051 . + . misc_feature unknown_1788 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2232075 2232088 . + . misc_feature unknown_1789 ; colour "6" ; note "ttaacataatgtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2232137 2232142 . + . misc_feature unknown_1790 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2232178 2232193 . + . misc_feature unknown_1791 ; colour "6" ; note "ttaacaaaataattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2232299 2232304 . + . misc_feature unknown_1792 ; colour "6" ; note "gtaggt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2232326 2232336 . + . misc_feature unknown_1793 ; colour "6" ; note "ttaactcatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2232896 2232901 . + . misc_feature unknown_1794 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2232932 2232942 . + . misc_feature unknown_1795 ; colour "6" ; note "ctgaccaatag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 2233448 2235979 . - . mRNA SPCC1919.12c ; db_xref "SPD:29/29C07" ; systematic_id "SPCC1919.12c" ; colour "7" ; GO "GO:0006508; proteolysis
GO:0008237; metallopeptidase activity
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR074W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1919.12c" ; product "aminopeptidase (predicted)" ;
chromosome3 GeneDB CDS 2233448 2235979 . - . mRNA SPCC1919.12c ; colour "7" ;
chromosome3 GeneDB CDS_parts 2236152 2237123 . - . mRNA SPCC1919.13c ; db_xref "SPD:13/13H07" ; systematic_id "SPCC1919.13c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL096C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1919.13c" ; product "ribosome biogenesis protein (predicted)" ;
chromosome3 GeneDB CDS 2236152 2236513 . - . mRNA SPCC1919.13c ; colour "7" ;
chromosome3 GeneDB CDS 2236637 2237123 . - . mRNA SPCC1919.13c ; colour "7" ;
chromosome3 GeneDB misc_feature 2236514 2236527 . - . misc_feature unknown_1796 ; colour "6" ; note "ctaattaattctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2236631 2236636 . - . misc_feature unknown_1797 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2237122 2237138 . - . mRNA SPCC1919.13c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.13c" ; systematic_id "SPCC1919.13c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2237547 2239202 . - . mRNA SPCC1919.14c ; systematic_id "SPCC1919.14c" ; colour "7" ; gene "bdp1 ||| SPCC1919.14c" ; db_xref "SPD:34/34G06" ; Alias "bdp1" ; GO "GO:0003677; DNA binding
GO:0006383; transcription from RNA polymerase III promoter
GO:0000126; transcription factor TFIIIB complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YNL039W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "bdp1" ; product "transcription factor TFIIIB complex subunit Bdp1 (predicted)" ; reserved_name "bdp1" ;
chromosome3 GeneDB CDS 2237547 2237788 . - . mRNA SPCC1919.14c ; colour "7" ;
chromosome3 GeneDB CDS 2237833 2237980 . - . mRNA SPCC1919.14c ; colour "7" ;
chromosome3 GeneDB CDS 2238019 2238668 . - . mRNA SPCC1919.14c ; colour "7" ;
chromosome3 GeneDB CDS 2238719 2239202 . - . mRNA SPCC1919.14c ; colour "7" ;
chromosome3 GeneDB misc_feature 2237789 2237805 . - . misc_feature unknown_1798 ; colour "6" ; note "ataaccatttaaattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2237827 2237832 . - . misc_feature unknown_1799 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2237981 2237992 . - . misc_feature unknown_1800 ; colour "6" ; note "ctgacatggcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2238013 2238018 . - . misc_feature unknown_1801 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2238669 2238683 . - . misc_feature unknown_1802 ; colour "6" ; note "ttaataacatcatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2238713 2238718 . - . misc_feature unknown_1803 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB intron 2239048 2239255 . - . intron SPCC1919.14c ; systematic_id "SPCC1919.14c" ;
chromosome3 GeneDB 5'-UTR 2239201 2239335 . - . mRNA SPCC1919.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.14c" ; systematic_id "SPCC1919.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2239885 2239974 . + . mRNA SPCC1919.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.15" ; systematic_id "SPCC1919.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2239975 2242053 . + . mRNA SPCC1919.15 ; systematic_id "SPCC1919.15" ; colour "2" ; gene "brl1 ||| SPCC1919.15 ||| SPCC790.01 ||| rfp2" ; Alias "brl1" ; db_xref "SPD:37/37C09" ; synonym "SPCC790.01 ||| rfp2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=conditional; allele=htbK119R; db_xref=PMID:17363370; date=20100723 ||| term=zf-C3HC4 type (RING finger); date=20070212 ||| term=zinc finger protein; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YDL074C; date=19700101 ||| term=misc, the chromatin assembly function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17374714; date=20070716 ||| term=misc, chromatin silencing function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17363370; date=20070716 ||| term=name description, RING finger protein; cv=name_description; db_xref=PMID:17363370; date=20070716 ||| term=name description, BRE1-like; cv=name_description; db_xref=PMID:17374714; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0033503; HULC complex
GO:0033503; HULC complex
GO:0005721; centric heterochromatin
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006336; DNA replication-independent nucleosome assembly
GO:0031497; chromatin assembly
GO:0006342; chromatin silencing
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0051569; regulation of histone H3-K4 methylation
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "brl1" ; product "ubiquitin-protein ligase E3 Brl1" ;
chromosome3 GeneDB CDS 2239975 2242053 . + . mRNA SPCC1919.15 ; colour "2" ;
chromosome3 GeneDB misc_feature 2241753 2242062 . - . misc_feature unknown_1804 ; note "nominal overlap with cosmid SPCC1919, EM:AL035075 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 2241753 2242062 . + . misc_feature unknown_1805 ; note "nominal overlap with cosmid SPCC790, EM:AL031855 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 2242033 2242212 . - . misc_feature unknown_1806 ; note "low complexity region with similar to Rice, Mouse and human genomic sequence" ;
chromosome3 GeneDB 3'-UTR 2242054 2242143 . + . mRNA SPCC1919.15 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1919.15" ; systematic_id "SPCC1919.15" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2242362 2242504 . + . mRNA SPCC790.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC790.02" ; systematic_id "SPCC790.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2242505 2245354 . + . mRNA SPCC790.02 ; systematic_id "SPCC790.02" ; colour "7" ; gene "pep3 ||| SPCC790.02" ; Alias "pep3" ; db_xref "SPD:29/29F02" ; synonym "vps18" ; GO "GO:0030897; HOPS complex
GO:0042144; vacuole fusion, non-autophagic
GO:0048278; vesicle docking
GO:0007033; vacuole organization and biogenesis
GO:0045324; late endosome to vacuole transport
GO:0006895; Golgi to endosome transport
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YLR148W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pep3" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome3 GeneDB CDS 2242505 2242754 . + . mRNA SPCC790.02 ; colour "7" ;
chromosome3 GeneDB CDS 2242804 2243268 . + . mRNA SPCC790.02 ; colour "7" ;
chromosome3 GeneDB CDS 2243319 2243992 . + . mRNA SPCC790.02 ; colour "7" ;
chromosome3 GeneDB CDS 2244041 2245354 . + . mRNA SPCC790.02 ; colour "7" ;
chromosome3 GeneDB misc_feature 2242755 2242760 . + . misc_feature unknown_1807 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2242790 2242803 . + . misc_feature unknown_1808 ; colour "6" ; note "ctgaccttcgttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2243269 2243274 . + . misc_feature unknown_1809 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2243304 2243318 . + . misc_feature unknown_1810 ; colour "6" ; note "ttaacatgatttaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2243993 2243998 . + . misc_feature unknown_1811 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2244024 2244040 . + . misc_feature unknown_1812 ; colour "6" ; note "ctaacataatatattag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2245355 2245605 . + . mRNA SPCC790.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC790.02" ; systematic_id "SPCC790.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2245937 2245968 . + . mRNA SPCC790.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC790.03" ; systematic_id "SPCC790.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2245969 2246915 . + . mRNA SPCC790.03 ; db_xref "SPD:13/13C09" ; systematic_id "SPCC790.03" ; colour "10" ; GO "GO:0030137; COPI-coated vesicle
GO:0005794; Golgi apparatus
GO:0004252; serine-type endopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL246C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; gene "SPCC790.03" ; product "rhomboid family protease" ;
chromosome3 GeneDB CDS 2245969 2246125 . + . mRNA SPCC790.03 ; colour "10" ;
chromosome3 GeneDB CDS 2246172 2246448 . + . mRNA SPCC790.03 ; colour "10" ;
chromosome3 GeneDB CDS 2246603 2246915 . + . mRNA SPCC790.03 ; colour "10" ;
chromosome3 GeneDB misc_feature 2246126 2246131 . + . misc_feature unknown_1813 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2246153 2246171 . + . misc_feature unknown_1814 ; colour "6" ; note "ttaataacggagagagtag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2246449 2246454 . + . misc_feature unknown_1815 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2246587 2246602 . + . misc_feature unknown_1816 ; colour "6" ; note "ttaacttattttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2246826 2248752 . + . misc_feature unknown_1817 ; note "nominal overlap with cosmid SPCC790 and cosmid SPCC1840" ;
chromosome3 GeneDB 3'-UTR 2246916 2247145 . + . mRNA SPCC790.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC790.03" ; systematic_id "SPCC790.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2247366 2247591 . - . mRNA SPCC1840.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.01c" ; systematic_id "SPCC1840.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2247592 2248164 . - . mRNA SPCC1840.01c ; systematic_id "SPCC1840.01c" ; colour "2" ; gene "mog1 ||| SPCC1840.01c ||| SPCC790.04c" ; Alias "mog1" ; db_xref "SPD:06/06B04" ; synonym "SPCC790.04c" ; GO "GO:0005634; nucleus
GO:0008536; Ran GTPase binding
GO:0000216; M/G1 transition of mitotic cell cycle
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0007264; small GTPase mediated signal transduction
GO:0006606; protein import into nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11290708; date=19700101 ||| term=orthologous to S. cerevisiae YJR074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mog1" ; product "Ran GTPase binding protein Mog1" ;
chromosome3 GeneDB CDS 2247592 2248164 . - . mRNA SPCC1840.01c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 2248163 2248193 . - . mRNA SPCC1840.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.01c" ; systematic_id "SPCC1840.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2248859 2249278 . - . mRNA SPCC1840.02c ; Alias "bgs4" ; ID "SPCC1840.02c" ; systematic_id "SPCC1840.02c" ; primary_name "bgs4" ; note "mRNA from AU008494" ;
chromosome3 GeneDB CDS_parts 2249279 2255146 . - . mRNA SPCC1840.02c ; systematic_id "SPCC1840.02c" ; colour "2" ; gene "bgs4 ||| orb11 ||| cwg1 ||| SPCC1840.02c" ; Alias "bgs4" ; db_xref "SPD:34/34B11" ; synonym "orb11 ||| cwg1" ; GO "GO:0030428; cell septum
GO:0051286; cell tip
GO:0005826; contractile ring
GO:0005887; integral to plasma membrane
GO:0030427; site of polarized growth
GO:0003843; 1,3-beta-glucan synthase activity
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0008360; regulation of cell shape
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, round cells; qualifier=overexpression; db_xref=PMID:15615781; date=20100731 ||| term=phenotype, cell morphology, stubby cells; qualifier=overexpression; db_xref=PMID:15615781; date=20100731 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:15615781; date=20100731 ||| term=phenotype, cell morphology, misshapen cells; qualifier=overexpression; db_xref=PMID:15615781; date=20100731 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061117 ||| term=orthologous to S. cerevisiae YLR342W and YGR032W and YMR306W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "bgs4" ; product "1,3-beta-glucan synthase subunit Bgs4" ; EC_number "2.4.1.34" ;
chromosome3 GeneDB CDS 2249279 2255146 . - . mRNA SPCC1840.02c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 2255145 2256606 . - . mRNA SPCC1840.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.02c" ; systematic_id "SPCC1840.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 2255146 2260282 . + . misc_feature unknown_1818 ; note "low complexity gene free region" ;
chromosome3 GeneDB misc_feature 2258174 2259977 . + . misc_feature unknown_1819 ; db_xref "PMID:18488015" ; controlled_curation "term=warning, no detectable long open reading frame; date=20071008 ||| term=transcription in low-complexity region; date=20071008 ||| term=low complexity; date=20071008" ; note "warning, this transcript could be on either strand ||| SPNG2592" ;
chromosome3 GeneDB 5'-UTR 2260015 2260281 . + . mRNA SPCC1840.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.03" ; systematic_id "SPCC1840.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2260282 2263569 . + . mRNA SPCC1840.03 ; systematic_id "SPCC1840.03" ; colour "2" ; gene "sal3 ||| pse1 ||| SPCC1840.03" ; Alias "sal3" ; db_xref "SPD:30/30C10" ; synonym "pse1" ; GO "GO:0005737; cytoplasm
; nuclear membrane
GO:0005643; nuclear pore
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0008565; protein transporter activity
GO:0006606; protein import into nucleus
GO:0034613; cellular protein localization
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12399381; date=19700101 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:12399381; date=19700101 ||| term=importin family; db_xref=PMID:12399381; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YMR308C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sal3" ; product "karyopherin Sal3" ;
chromosome3 GeneDB CDS 2260282 2263569 . + . mRNA SPCC1840.03 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 2263570 2263701 . + . mRNA SPCC1840.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.03" ; systematic_id "SPCC1840.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2263967 2265456 . + . mRNA SPCC1840.04 ; systematic_id "SPCC1840.04" ; colour "2" ; gene "SPCC1840.04 ||| pca1" ; Alias "pca1" ; db_xref "SPD:24/24A08" ; GO "GO:0005634; nucleus
GO:0004197; cysteine-type endopeptidase activity
GO:0051603; proteolysis involved in cellular protein catabolic process
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR197W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pombe CAspase 1; cv=name_description; date=20091019 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "pca1" ; product "metacaspase Pca1" ;
chromosome3 GeneDB CDS 2263967 2264420 . + . mRNA SPCC1840.04 ; colour "2" ;
chromosome3 GeneDB CDS 2264467 2264526 . + . mRNA SPCC1840.04 ; colour "2" ;
chromosome3 GeneDB CDS 2264568 2264665 . + . mRNA SPCC1840.04 ; colour "2" ;
chromosome3 GeneDB CDS 2264712 2264735 . + . mRNA SPCC1840.04 ; colour "2" ;
chromosome3 GeneDB CDS 2264776 2264944 . + . mRNA SPCC1840.04 ; colour "2" ;
chromosome3 GeneDB CDS 2264984 2265456 . + . mRNA SPCC1840.04 ; colour "2" ;
chromosome3 GeneDB misc_feature 2264421 2264426 . + . misc_feature unknown_1820 ; colour "6" ; note "gtacgg, splice donor sequence" ;
chromosome3 GeneDB intron 2264421 2264466 . + . intron SPCC1840.04 ; systematic_id "SPCC1840.04" ; note "confirmed by AF316601" ;
chromosome3 GeneDB misc_feature 2264453 2264466 . + . misc_feature unknown_1821 ; colour "6" ; note "ttaacttgtttaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2264527 2264532 . + . misc_feature unknown_1822 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB intron 2264527 2264567 . + . intron SPCC1840.04 ; systematic_id "SPCC1840.04" ; note "confirmed by AF316601" ;
chromosome3 GeneDB misc_feature 2264553 2264567 . + . misc_feature unknown_1823 ; colour "6" ; note "ctaaaacttttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2264666 2264671 . + . misc_feature unknown_1824 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB intron 2264666 2264711 . + . intron SPCC1840.04 ; systematic_id "SPCC1840.04" ; note "confirmed by AF316601" ;
chromosome3 GeneDB misc_feature 2264700 2264711 . + . misc_feature unknown_1825 ; colour "6" ; note "ctaactatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2264736 2264741 . + . misc_feature unknown_1826 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB intron 2264736 2264775 . + . intron SPCC1840.04 ; systematic_id "SPCC1840.04" ; note "confirmed by AF316601" ;
chromosome3 GeneDB misc_feature 2264763 2264775 . + . misc_feature unknown_1827 ; colour "6" ; note "ctcacatgcatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2264945 2264950 . + . misc_feature unknown_1828 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2264970 2264983 . + . misc_feature unknown_1829 ; colour "6" ; note "ttaacaaaatatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2265570 2265657 . - . mRNA SPCC1840.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.05c" ; systematic_id "SPCC1840.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2265658 2267920 . - . mRNA SPCC1840.05c ; db_xref "SPD:28/28B04" ; systematic_id "SPCC1840.05c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006006; cellular glucose metabolic process
GO:0004614; phosphoglucomutase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR278W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; gene "SPCC1840.05c" ; product "phosphoglucomutase (predicted)" ;
chromosome3 GeneDB CDS 2265658 2267270 . - . mRNA SPCC1840.05c ; colour "7" ;
chromosome3 GeneDB CDS 2267708 2267807 . - . mRNA SPCC1840.05c ; colour "7" ;
chromosome3 GeneDB CDS 2267870 2267920 . - . mRNA SPCC1840.05c ; colour "7" ;
chromosome3 GeneDB misc_feature 2267271 2267285 . - . misc_feature unknown_1830 ; colour "6" ; note "ctaatgtttacaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2267702 2267707 . - . misc_feature unknown_1831 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2267808 2267828 . - . misc_feature unknown_1832 ; colour "6" ; note "ctaacagattgaacgcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2267864 2267869 . - . misc_feature unknown_1833 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2267919 2267937 . - . mRNA SPCC1840.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.05c" ; systematic_id "SPCC1840.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2268705 2268883 . - . mRNA SPCC1840.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.06" ; systematic_id "SPCC1840.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2268884 2269721 . - . mRNA SPCC1840.06 ; systematic_id "SPCC1840.06" ; colour "7" ; gene "atp5 ||| SPCC1840.06" ; Alias "atp5" ; db_xref "SPD:11/11A02" ; GO "GO:0000274; proton-transporting ATP synthase, stator stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0005198; structural molecule activity
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR298C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp5" ; product "F0-ATPase delta subunit (predicted)" ;
chromosome3 GeneDB CDS 2268884 2268894 . - . mRNA SPCC1840.06 ; colour "7" ;
chromosome3 GeneDB CDS 2268970 2269488 . - . mRNA SPCC1840.06 ; colour "7" ;
chromosome3 GeneDB CDS 2269601 2269721 . - . mRNA SPCC1840.06 ; colour "7" ;
chromosome3 GeneDB intron 2268895 2268969 . - . intron SPCC1840.06 ; systematic_id "SPCC1840.06" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2269489 2269510 . - . misc_feature unknown_1834 ; colour "6" ; note "ttaactcttttctcttatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2269595 2269600 . - . misc_feature unknown_1835 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2269720 2269751 . - . mRNA SPCC1840.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.06" ; systematic_id "SPCC1840.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2270193 2270636 . - . mRNA SPCC1840.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.07c" ; systematic_id "SPCC1840.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2270637 2271635 . - . mRNA SPCC1840.07c ; db_xref "SPD:14/14F08" ; systematic_id "SPCC1840.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; gene "SPCC1840.07c" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome3 GeneDB CDS 2270637 2271635 . - . mRNA SPCC1840.07c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2271785 2272158 . - . mRNA SPCC1840.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.08c" ; systematic_id "SPCC1840.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2272159 2273844 . - . mRNA SPCC1840.08c ; db_xref "SPD:35/35C04" ; systematic_id "SPCC1840.08c" ; colour "7" ; GO "GO:0003756; protein disulfide isomerase activity
GO:0005789; endoplasmic reticulum membrane
GO:0006621; protein retention in ER
GO:0030433; ER-associated protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC1840.08c" ; product "protein disulfide isomerase (predicted)" ;
chromosome3 GeneDB CDS 2272159 2273844 . - . mRNA SPCC1840.08c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2273843 2273930 . - . mRNA SPCC1840.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.08c" ; systematic_id "SPCC1840.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2274207 2274367 . - . mRNA SPCC1840.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.09" ; systematic_id "SPCC1840.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2274368 2275198 . - . mRNA SPCC1840.09 ; db_xref "SPD:10/10G04" ; systematic_id "SPCC1840.09" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR290C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1840.09" ; product "NAD dependent epimerase/dehydratase family protein" ;
chromosome3 GeneDB CDS 2274368 2275198 . - . mRNA SPCC1840.09 ; colour "10" ;
chromosome3 GeneDB 5'-UTR 2275197 2275471 . - . mRNA SPCC1840.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.09" ; systematic_id "SPCC1840.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 2275648 2277744 . + . misc_RNA SPNCRNA.516 ; db_xref "PMID:18488015" ; synonym "SPNG2596-97" ; systematic_id "SPNCRNA.516" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 5'-UTR 2277890 2277901 . + . mRNA SPCC1840.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1840.10" ; systematic_id "SPCC1840.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2277902 2278303 . + . mRNA SPCC1840.10 ; systematic_id "SPCC1840.10" ; colour "7" ; gene "lsm8 ||| SPCC1840.10" ; Alias "lsm8" ; db_xref "SPD:03/03B02" ; GO "GO:0030532; small nuclear ribonucleoprotein complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsm8" ; product "U6 snRNP-associated protein Lsm8 (predicted)" ;
chromosome3 GeneDB CDS 2277902 2277926 . + . mRNA SPCC1840.10 ; colour "7" ;
chromosome3 GeneDB CDS 2277981 2278149 . + . mRNA SPCC1840.10 ; colour "7" ;
chromosome3 GeneDB CDS 2278213 2278303 . + . mRNA SPCC1840.10 ; colour "7" ;
chromosome3 GeneDB misc_feature 2277927 2277932 . + . misc_feature unknown_1836 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2277961 2277980 . + . misc_feature unknown_1837 ; colour "6" ; note "ctaatatagatgttcgttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2278150 2278155 . + . misc_feature unknown_1838 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2278196 2278212 . + . misc_feature unknown_1839 ; colour "6" ; note "ctaatagttatttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2278671 2281825 . + . misc_feature unknown_1840 ; note "nominal overlap with cosmid SPCC1840 and cosmid SPCC965" ;
chromosome3 GeneDB CDS_parts 2279333 2279878 . + . mRNA SPCC1840.11 ; systematic_id "SPCC1840.11" ; colour "7" ; db_xref "SPD:05/05E11" ; Alias "csl4" ; synonym "SPCC965.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL232W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0005730; nucleolus
GO:0000175; 3'-5'-exoribonuclease activity
GO:0003723; RNA binding
GO:0006364; 35S primary transcript processing
GO:0061013; nuclear-transcribed mRNA catabolism" ; primary_name "csl4" ; product "exosome subunit Csl4 (predicted)" ;
chromosome3 GeneDB CDS 2279333 2279878 . + . mRNA SPCC1840.11 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2279879 2280286 . + . mRNA SPCC1840.11 ; Alias "csl4" ; ID "SPCC1840.11" ; systematic_id "SPCC1840.11" ; primary_name "csl4" ; note "mRNA from AU009422" ;
chromosome3 GeneDB CDS_parts 2281612 2284101 . + . mRNA SPCC1840.12 ; systematic_id "SPCC1840.12" ; colour "7" ; gene "SPCC965.02 ||| SPCC1840.12" ; Alias "SPCC965.02" ; db_xref "SPD:29/29A02" ; synonym "SPCC965.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL212C and YPR194C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005887; integral to plasma membrane
GO:0015198; oligopeptide transporter activity
GO:0022857; transmembrane transporter activity
GO:0006857; oligopeptide transport" ; primary_name "SPCC965.02" ; product "OPT oligopeptide transporter family protein (predicted)" ;
chromosome3 GeneDB CDS 2281612 2281912 . + . mRNA SPCC1840.12 ; colour "7" ;
chromosome3 GeneDB CDS 2282027 2284101 . + . mRNA SPCC1840.12 ; colour "7" ;
chromosome3 GeneDB misc_feature 2281913 2281918 . + . misc_feature unknown_1841 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2282004 2282026 . + . misc_feature unknown_1842 ; note "ttaacttctcactttctttgtag, splice branch and acceptor" ;
chromosome3 GeneDB 5'-UTR 2285041 2285072 . + . mRNA SPCC965.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.03" ; systematic_id "SPCC965.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2285073 2286229 . + . mRNA SPCC965.03 ; systematic_id "SPCC965.03" ; colour "7" ; gene "vma8 ||| SPCC965.03" ; Alias "vma8" ; db_xref "SPD:18/18C08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000221; vacuolar proton-transporting V-type ATPase, V1 domain
GO:0005524; ATP binding
GO:0046961; hydrogen ion transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; primary_name "vma8" ; product "V-type ATPase V1 subunit D (predicted)" ; EC_number "3.6.3.14" ;
chromosome3 GeneDB CDS 2285073 2285113 . + . mRNA SPCC965.03 ; colour "7" ;
chromosome3 GeneDB CDS 2285154 2285271 . + . mRNA SPCC965.03 ; colour "7" ;
chromosome3 GeneDB CDS 2285531 2286229 . + . mRNA SPCC965.03 ; colour "7" ;
chromosome3 GeneDB misc_feature 2285114 2285119 . + . misc_feature unknown_1843 ; note "gtacgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2285141 2285153 . + . misc_feature unknown_1844 ; note "ctaattttattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2285272 2285277 . + . misc_feature unknown_1845 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2285513 2285530 . + . misc_feature unknown_1846 ; note "ctaatgatatcttgatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2286230 2286690 . + . mRNA SPCC965.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.03" ; systematic_id "SPCC965.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2286857 2286996 . - . mRNA SPCC965.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.04c" ; systematic_id "SPCC965.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2286997 2289227 . - . mRNA SPCC965.04c ; db_xref "SPD:46/46G05" ; systematic_id "SPCC965.04c" ; colour "7" ; GO "GO:0004176; ATP-dependent peptidase activity
GO:0007005; mitochondrion organization and biogenesis
GO:0005743; mitochondrial inner membrane
GO:0006515; misfolded or incompletely synthesized protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YPR024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC965.04c" ; product "mitochondrial inner membrane i-AAA protease complex subunit Yme1 (predicted)" ;
chromosome3 GeneDB CDS 2286997 2289093 . - . mRNA SPCC965.04c ; colour "7" ;
chromosome3 GeneDB CDS 2289195 2289227 . - . mRNA SPCC965.04c ; colour "7" ;
chromosome3 GeneDB misc_feature 2289094 2289115 . - . misc_feature unknown_1847 ; note "ctaactcattacttgacgatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2289189 2289194 . - . misc_feature unknown_1848 ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2289226 2289278 . - . mRNA SPCC965.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.04c" ; systematic_id "SPCC965.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 2289566 2290607 . + . misc_RNA SPNCRNA.517 ; db_xref "PMID:18488015" ; synonym "SPNG2600-02" ; systematic_id "SPNCRNA.517" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB 3'-UTR 2290925 2291003 . - . mRNA SPCC965.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.05c" ; systematic_id "SPCC965.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2291004 2291981 . - . mRNA SPCC965.05c ; systematic_id "SPCC965.05c" ; colour "2" ; gene "thp1 ||| SPCC965.05c" ; Alias "thp1" ; db_xref "SPD:14/14A10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006281; DNA repair
GO:0004844; uracil DNA N-glycosylase activity" ; primary_name "thp1" ; product "uracil DNA N-glycosylase Thp1" ; EC_number "3.2.2.-" ;
chromosome3 GeneDB CDS 2291004 2291981 . - . mRNA SPCC965.05c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 2291980 2292136 . - . mRNA SPCC965.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.05c" ; systematic_id "SPCC965.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2292961 2293286 . + . mRNA SPCC965.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.06" ; systematic_id "SPCC965.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2293287 2294321 . + . mRNA SPCC965.06 ; db_xref "SPD:15/15F11" ; systematic_id "SPCC965.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; gene "SPCC965.06" ; product "potassium channel subunit (predicted)" ;
chromosome3 GeneDB CDS 2293287 2294321 . + . mRNA SPCC965.06 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2294322 2294448 . + . mRNA SPCC965.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.06" ; systematic_id "SPCC965.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2295052 2295374 . - . mRNA SPCC965.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.07c" ; systematic_id "SPCC965.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2295375 2296067 . - . mRNA SPCC965.07c ; systematic_id "SPCC965.07c" ; colour "2" ; gene "gst2 ||| SPCC965.07c" ; Alias "gst2" ; db_xref "SPD:08/08B03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL229C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=thioredoxin family; date=20081111" ; GO "GO:0034599; cellular response to oxidative stress
GO:0042493; response to drug
GO:0004364; glutathione transferase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0042803; protein homodimerization activity
GO:0046982; protein heterodimerization activity" ; primary_name "gst2" ; product "glutathione S-transferase Gst2" ; EC_number "2.5.1.18" ;
chromosome3 GeneDB CDS 2295375 2296067 . - . mRNA SPCC965.07c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 2296066 2296095 . - . mRNA SPCC965.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.07c" ; systematic_id "SPCC965.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2297563 2298690 . - . mRNA SPCC965.08c ; systematic_id "SPCC965.08c" ; colour "2" ; gene "alr1 ||| SPCC965.08c" ; Alias "alr1" ; db_xref "SPD:17/17G03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible horizontal transfer; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101" ; GO "GO:0008784; alanine racemase activity
GO:0030378; serine racemase activity
GO:0006522; alanine metabolism
GO:0034641; cellular ntirogen compound metabolic process" ; primary_name "alr1" ; product "alanine racemase Alr1" ; EC_number "5.1.1.1" ;
chromosome3 GeneDB CDS 2297563 2298690 . - . mRNA SPCC965.08c ; colour "2" ;
chromosome3 GeneDB misc_RNA 2299407 2300209 . - . misc_RNA SPNCRNA.45 ; Alias "prl45" ; db_xref "EMBL:AB084857 ||| PMID:12597277" ; systematic_id "SPNCRNA.45" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl45" ; gene "prl45 ||| SPNCRNA.45" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB 5'-UTR 2300660 2300695 . + . mRNA SPCC965.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.09" ; systematic_id "SPCC965.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2300696 2301514 . + . mRNA SPCC965.09 ; db_xref "SPD:10/10E10" ; systematic_id "SPCC965.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR351C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human NIT2 ortholog; date=20100728" ; colour "10" ; gene "SPCC965.09" ; product "nitrilase family protein, omega-amidase related (predicted)" ;
chromosome3 GeneDB CDS 2300696 2301514 . + . mRNA SPCC965.09 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 2301515 2301816 . + . mRNA SPCC965.09 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.09" ; systematic_id "SPCC965.09" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2302475 2302548 . + . mRNA SPCC965.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.10" ; systematic_id "SPCC965.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2302549 2304126 . + . mRNA SPCC965.10 ; db_xref "SPD:25/25D08" ; systematic_id "SPCC965.10" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0008270; zinc ion binding
GO:0006355; regulation of transcription, DNA- dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YDL170W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC965.10" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB CDS 2302549 2304126 . + . mRNA SPCC965.10 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2304127 2305171 . + . mRNA SPCC965.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.10" ; systematic_id "SPCC965.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2304137 2305750 . - . mRNA SPCC965.11c ; db_xref "SPD:25/25H04" ; systematic_id "SPCC965.11c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL055W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPCC965.11c" ; product "amino acid transporter (predicted)" ;
chromosome3 GeneDB CDS 2304137 2305750 . - . mRNA SPCC965.11c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2305902 2305992 . + . mRNA SPCC965.12 ; ID "SPCC965.12" ; systematic_id "SPCC965.12" ; note "mRNA from AU007527" ;
chromosome3 GeneDB intron 2305993 2306048 . + . intron unknown_1849 ; note "confirmed in 5'UTR" ;
chromosome3 GeneDB CDS_parts 2306292 2307542 . + . mRNA SPCC965.12 ; db_xref "SPD:20/20A02" ; systematic_id "SPCC965.12" ; colour "10" ; GO "GO:0008233; peptidase" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC965.12" ; product "dipeptidyl peptidase (predicted)" ;
chromosome3 GeneDB CDS 2306292 2307542 . + . mRNA SPCC965.12 ; colour "10" ;
chromosome3 GeneDB rRNA 2308122 2308319 . - . rRNA SPRRNA.07 ; systematic_id "SPRRNA.07" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "5S rRNA" ;
chromosome3 GeneDB misc_RNA 2308667 2308904 . + . misc_RNA SPNCRNA.121 ; db_xref "EMBL:AU007263" ; systematic_id "SPNCRNA.121" ; controlled_curation "term=; qualifier=predicted; db_xref=EMBL:AU007263; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=EMBL:AU007263; date=20050412" ; gene "SPNCRNA.121" ; product "non-coding RNA (predicted)" ; note "mRNA from AU007263; not associated with an ORF" ;
chromosome3 GeneDB misc_feature 2308905 2312480 . - . misc_feature unknown_1850 ; note "low complexity gene free region" ;
chromosome3 GeneDB misc_RNA 2309721 2310132 . + . misc_RNA SPNCRNA.550 ; db_xref "PMID:18488015" ; synonym "SPNGAF49" ; systematic_id "SPNCRNA.550" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB misc_RNA 2310377 2310786 . + . misc_RNA SPNCRNA.35 ; Alias "prl35" ; db_xref "PMID:12597277 ||| EMBL:AB084847" ; systematic_id "SPNCRNA.35" ; controlled_curation "term=genome organization, low complexity gene free region; qualifier=predicted; cv=genome_org; date=20050412 ||| term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl35" ; gene "prl35 ||| SPNCRNA.35" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB 5'-UTR 2311551 2312479 . + . mRNA SPCC965.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.13" ; systematic_id "SPCC965.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2312480 2314093 . + . mRNA SPCC965.13 ; db_xref "SPD:25/25H05" ; systematic_id "SPCC965.13" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0005887; integral to plasma membrane
GO:0031923; pyridoxine transport
GO:0031928; pyridoxine transporter activity
GO:0031920; pyridoxal transport
GO:0031925; pyridoxal transporter activity
GO:0031922; pyridoxamine transport
GO:0031927; pyridoxamine transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPAC17A2.01 and SPCC576.17c; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC965.13" ; product "pyradoxal family membrane transporter (predicted)" ;
chromosome3 GeneDB CDS 2312480 2314093 . + . mRNA SPCC965.13 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2314094 2314300 . + . mRNA SPCC965.13 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.13" ; systematic_id "SPCC965.13" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2314798 2314801 . + . mRNA SPCC965.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.14c" ; systematic_id "SPCC965.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2314802 2315290 . + . mRNA SPCC965.14c ; db_xref "SPD:04/04F08" ; systematic_id "SPCC965.14c" ; colour "7" ; GO "GO:0008270; zinc ion binding
GO:0004131; cytosine deaminase activity
GO:0019858; cytosine metabolism
GO:0008655; pyrimidine salvage
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR062W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC965.14c" ; product "cytosine deaminase (predicted)" ;
chromosome3 GeneDB CDS 2314802 2315290 . + . mRNA SPCC965.14c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2315291 2315402 . + . mRNA SPCC965.14c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC965.14c" ; systematic_id "SPCC965.14c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 2315395 2316760 . + . misc_feature unknown_1851 ; note "nominal overlap with cosmid SPCC1494 and cosmid SPCC965" ;
chromosome3 GeneDB 5'-UTR 2316172 2316441 . + . mRNA SPCC1494.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.01" ; systematic_id "SPCC1494.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2316442 2317448 . + . mRNA SPCC1494.01 ; systematic_id "SPCC1494.01" ; colour "10" ; gene "SPCC1494.01 ||| SPCC965.15" ; db_xref "SPD:14/14H03" ; synonym "SPCC965.15" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; product "iron/ascorbate oxidoreductase family" ;
chromosome3 GeneDB CDS 2316442 2317121 . + . mRNA SPCC1494.01 ; colour "10" ;
chromosome3 GeneDB CDS 2317163 2317448 . + . mRNA SPCC1494.01 ; colour "10" ;
chromosome3 GeneDB misc_feature 2317122 2317127 . + . misc_feature unknown_1852 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2317147 2317162 . + . misc_feature unknown_1853 ; colour "6" ; note "ctaaccatttacatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2317449 2317765 . + . mRNA SPCC1494.01 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.01" ; systematic_id "SPCC1494.01" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 2318069 2318082 . - . misc_feature unknown_1854 ; colour "6" ; note "ctaatgacctaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2318194 2318199 . - . misc_feature unknown_1855 ; colour "6" ; note "gtatga, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2318245 2318256 . - . misc_feature unknown_1856 ; colour "6" ; note "ttaattttaaag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 2318335 2318966 . - . mRNA SPCC1494.02c ; systematic_id "SPCC1494.02c" ; colour "7" ; gene "taf13 ||| SPCC1494.02c" ; note "splicing tentative, 1st exon may not be real - also last two exons" ; Alias "taf13" ; db_xref "SPD:43/43F07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YML098W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter" ; primary_name "taf13" ; product "transcription factor TFIID complex subunit Taf13 (predicted)" ;
chromosome3 GeneDB CDS 2318335 2318508 . - . mRNA SPCC1494.02c ; colour "7" ;
chromosome3 GeneDB CDS 2318579 2318676 . - . mRNA SPCC1494.02c ; colour "7" ;
chromosome3 GeneDB CDS 2318903 2318966 . - . mRNA SPCC1494.02c ; colour "7" ;
chromosome3 GeneDB misc_feature 2318392 2318397 . - . misc_feature unknown_1857 ; colour "6" ; note "gtatta, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2318509 2318523 . - . misc_feature unknown_1858 ; colour "6" ; note "ttaactagaatacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2318573 2318578 . - . misc_feature unknown_1859 ; colour "6" ; note "gtaggg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2318677 2318691 . - . misc_feature unknown_1860 ; colour "6" ; note "cttacttttctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2318897 2318902 . - . misc_feature unknown_1861 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2319916 2324840 . - . misc_feature Tf2-13-pseudo ; db_xref "SO:0000186" ; systematic_id "Tf2-13-pseudo" ; note "LTR-retrotransposon ||| 1 frameshift" ;
chromosome3 GeneDB LTR 2319921 2320269 . - . LTR unknown_1862 ; colour "4" ; note "tf2 type LTR" ;
chromosome3 GeneDB CDS_parts 2320320 2324320 . - . mRNA SPCC1494.11c ; systematic_id "SPCC1494.11c" ; colour "13" ; gene "SPCC1494.11c" ; note "LTR retrotransposon ||| tf2-type" ; Alias "Tf2-13-pseudo" ; obsolete_name "Tf-pseudoIII" ; pseudo "_no_value" ; controlled_curation "term=tf2-type transposon; date=19700101 ||| term=warning, frameshifted; cv=warning; date=19700101" ; primary_name "Tf2-13-pseudo" ; product "retrotransposable element: pseudo" ;
chromosome3 GeneDB CDS 2320320 2324320 . - . mRNA SPCC1494.11c ; colour "13" ;
chromosome3 GeneDB LTR 2324487 2324835 . - . LTR unknown_1863 ; colour "4" ; note "tf2 type LTR" ;
chromosome3 GeneDB 5'-UTR 2325028 2325171 . + . mRNA SPCC1494.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.03" ; systematic_id "SPCC1494.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2325172 2326650 . + . mRNA SPCC1494.03 ; systematic_id "SPCC1494.03" ; colour "2" ; gene "arz1 ||| SPCC1494.03" ; db_xref "SPD:23/23H04" ; Alias "arz1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=20071210 ||| term=target of Zfs1; db_xref=PMID:18042546; date=20071210 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "arz1" ; product "armadillo repeat containing, Zfs1 target number 1" ;
chromosome3 GeneDB CDS 2325172 2326650 . + . mRNA SPCC1494.03 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 2326651 2327006 . + . mRNA SPCC1494.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.03" ; systematic_id "SPCC1494.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2327116 2327153 . - . mRNA SPCC1494.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.04c" ; systematic_id "SPCC1494.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2327154 2328548 . - . mRNA SPCC1494.04c ; systematic_id "SPCC1494.04c" ; colour "2" ; gene "tyr1 ||| SPCC1494.04c" ; Alias "tyr1" ; db_xref "SPD:21/21F02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR166C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004665; prephenate dehydrogenase (NADP+) activity
GO:0005737; cytoplasm
GO:0006571; tyrosine biosynthesis
GO:0004665; prephenate dehydrogenase (NADP+) activity
GO:0006571; tyrosine biosynthesis" ; primary_name "tyr1" ; product "prephenate dehydrogenase [NADP+] Tyr1 (predicted)" ; EC_number "1.3.1.13" ;
chromosome3 GeneDB CDS 2327154 2328363 . - . mRNA SPCC1494.04c ; colour "2" ;
chromosome3 GeneDB CDS 2328463 2328548 . - . mRNA SPCC1494.04c ; colour "2" ;
chromosome3 GeneDB misc_feature 2328364 2328379 . - . misc_feature unknown_1864 ; colour "6" ; note "ctaacatcataaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2328457 2328462 . - . misc_feature unknown_1865 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2328547 2328656 . - . mRNA SPCC1494.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.04c" ; systematic_id "SPCC1494.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2329371 2329467 . - . mRNA SPCC1494.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.05c" ; systematic_id "SPCC1494.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2329468 2332407 . - . mRNA SPCC1494.05c ; systematic_id "SPCC1494.05c" ; colour "2" ; gene "ubp12 ||| SPCC1494.05c" ; db_xref "SPD:47/47E09" ; Alias "ubp12" ; GO "GO:0004221; ubiquitin thiolesterase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL197W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human USP4 and USP15 ortholog; date=20101001" ; primary_name "ubp12" ; product "CSN-associated deubiquitinating enzyme Ubp12" ;
chromosome3 GeneDB CDS 2329468 2332407 . - . mRNA SPCC1494.05c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 2332406 2332452 . - . mRNA SPCC1494.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.05c" ; systematic_id "SPCC1494.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2332780 2332928 . - . mRNA SPCC1494.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.06c" ; systematic_id "SPCC1494.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2332929 2334716 . - . mRNA SPCC1494.06c ; db_xref "SPD:45/45H05" ; systematic_id "SPCC1494.06c" ; colour "7" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; rRNA processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YLR276C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1494.06c" ; product "ATP-dependent RNA helicase Dbp9 (predicted)" ;
chromosome3 GeneDB CDS 2332929 2334716 . - . mRNA SPCC1494.06c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2334715 2334926 . - . mRNA SPCC1494.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.06c" ; systematic_id "SPCC1494.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2336577 2336789 . + . mRNA SPCC1494.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.07" ; systematic_id "SPCC1494.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2336790 2341298 . + . mRNA SPCC1494.07 ; db_xref "SPD:30/30H08" ; systematic_id "SPCC1494.07" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YMR259C; date=19700101 ||| term=human THADA ortholog; date=20080428 ||| term=disease associated, thyroid adenoma; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100204" ; gene "SPCC1494.07" ; product "human THADA ortholog" ;
chromosome3 GeneDB CDS 2336790 2341298 . + . mRNA SPCC1494.07 ; colour "10" ;
chromosome3 GeneDB CDS_parts 2341559 2342383 . - . mRNA SPCC1494.08c ; db_xref "SPD:10/10F11" ; systematic_id "SPCC1494.08c" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL086C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC1494.08c" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 2341559 2342383 . - . mRNA SPCC1494.08c ; colour "10" ;
chromosome3 GeneDB CDS_parts 2343056 2343597 . - . mRNA SPCC1494.09c ; db_xref "SPD:05/05E04" ; systematic_id "SPCC1494.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1494.09c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 2343056 2343437 . - . mRNA SPCC1494.09c ; colour "8" ;
chromosome3 GeneDB CDS 2343506 2343597 . - . mRNA SPCC1494.09c ; colour "8" ;
chromosome3 GeneDB misc_feature 2343438 2343456 . - . misc_feature unknown_1866 ; colour "6" ; note "ctaacattggtatcgttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2343500 2343505 . - . misc_feature unknown_1867 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2343596 2343890 . - . mRNA SPCC1494.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.09c" ; systematic_id "SPCC1494.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 5'-UTR 2344770 2345366 . + . mRNA SPCC1494.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.10" ; systematic_id "SPCC1494.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 2345066 2346903 . + . misc_feature unknown_1868 ; note "nominal overlap with cosmid SPCC1494, EM:AL023776 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_feature 2345066 2346904 . + . misc_feature unknown_1869 ; note "nominal overlap with cosmid SPCC70, EM:AL023794 S. pombe chromosome 3" ;
chromosome3 GeneDB CDS_parts 2345367 2348261 . + . mRNA SPCC1494.10 ; systematic_id "SPCC1494.10" ; colour "7" ; gene "SPCC1494.10 ||| SPCC70.01 ||| adn3" ; Alias "adn3" ; db_xref "SPD:47/47D07" ; synonym "SPCC70.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC1289.10c; date=19700101 ||| term=orthologous to S. cerevisiae YER109C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, ADhesioN defective; db_xref=PMID:19542312; date=20090629 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706 ||| term=phenotype, adhesion defects, cell-substrate adhesion, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706" ; GO "GO:0005634; nucleus
; DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0010811; positive regulation of cell substrate adhesion" ; primary_name "adn3" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB CDS 2345367 2348261 . + . mRNA SPCC1494.10 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2348262 2348565 . + . mRNA SPCC1494.10 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1494.10" ; systematic_id "SPCC1494.10" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2349117 2349364 . - . mRNA SPCC70.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC70.02c" ; systematic_id "SPCC70.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2349365 2349637 . - . mRNA SPCC70.02c ; db_xref "SPD:01/01C04" ; systematic_id "SPCC70.02c" ; colour "7" ; GO "GO:0005753; mitochondrial proton-transporting ATP synthase complex
GO:0004857; enzyme inhibitor activity
GO:0032780; negative regulation of ATPase activity
GO:0045978; negative regulation of nucleoside metabolism
GO:0006091; generation of precursor metabolites and energy" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL181W and YDL130W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC70.02c" ; product "mitochondrial ATPase inhibitor (predicted)" ;
chromosome3 GeneDB CDS 2349365 2349637 . - . mRNA SPCC70.02c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2349636 2349721 . - . mRNA SPCC70.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC70.02c" ; systematic_id "SPCC70.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2350436 2350727 . - . mRNA SPCC70.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC70.03c" ; systematic_id "SPCC70.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2350728 2352206 . - . mRNA SPCC70.03c ; db_xref "KEGG:MAP00330; ||| SPD:23/23H05" ; systematic_id "SPCC70.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR142W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006562; proline catabolism
GO:0006537; glutamate biosynthesis
GO:0004657; proline dehydrogenase activity
GO:0005759; mitochondrial matrix" ; gene "SPCC70.03c" ; product "proline dehydrogenase (predicted)" ; EC_number "1.5.99.8" ;
chromosome3 GeneDB CDS 2350728 2352206 . - . mRNA SPCC70.03c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2352205 2352580 . - . mRNA SPCC70.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC70.03c" ; systematic_id "SPCC70.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2353571 2354409 . - . mRNA SPCC70.04c ; db_xref "SPD:43/43D05" ; systematic_id "SPCC70.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC70.04c" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 2353571 2353701 . - . mRNA SPCC70.04c ; colour "8" ;
chromosome3 GeneDB CDS 2353746 2353913 . - . mRNA SPCC70.04c ; colour "8" ;
chromosome3 GeneDB CDS 2353974 2354409 . - . mRNA SPCC70.04c ; colour "8" ;
chromosome3 GeneDB misc_feature 2353702 2353717 . - . misc_feature unknown_1870 ; colour "6" ; note "ctaaccgtacttttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2353740 2353745 . - . misc_feature unknown_1871 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2353914 2353928 . - . misc_feature unknown_1872 ; colour "6" ; note "ctaatgaatgaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2353968 2353973 . - . misc_feature unknown_1873 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 2354785 2355544 . - . mRNA SPCC70.12c ; Alias "ecl1" ; ID "SPCC70.12c" ; systematic_id "SPCC70.12c" ; primary_name "ecl1" ;
chromosome3 GeneDB CDS_parts 2355545 2355787 . - . mRNA SPCC70.12c ; systematic_id "SPCC70.12c" ; colour "2" ; gene "SPCC70.12c ||| ecl1" ; Alias "ecl1" ; obsolete_name "SPNCRNA.518" ; synonym "SPNG2611" ; GO "GO:0005634; nucleus
GO:0001300; chronological cell aging" ; controlled_curation "term=orthologous to S. cerevisiae YGR146C; date=20080428 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, conserved in Fungi; date=20090410 ||| term=species distribution, conserved in Fungi only; date=20090410 ||| term=warning, previously annotated as ncRNA; cv=warning; date=20100227" ; primary_name "ecl1" ; product "extender of the chronological lifespan protein Ecl1" ;
chromosome3 GeneDB CDS 2355545 2355787 . - . mRNA SPCC70.12c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 2355788 2356058 . - . mRNA SPCC70.12c ; Alias "ecl1" ; ID "SPCC70.12c" ; systematic_id "SPCC70.12c" ; primary_name "ecl1" ;
chromosome3 GeneDB misc_feature 2356059 2359077 . - . misc_feature unknown_1874 ; note "low-complexity gene-free region" ;
chromosome3 GeneDB 3'-UTR 2358577 2359077 . - . mRNA SPCC70.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC70.05c" ; systematic_id "SPCC70.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2359078 2361423 . - . mRNA SPCC70.05c ; db_xref "SPD:28/28D09" ; systematic_id "SPCC70.05c" ; colour "7" ; GO "GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0007165; signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=similar to S. pombe SPBC21.07C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC70.05c" ; product "serine/threonine protein kinase (predicted)" ;
chromosome3 GeneDB CDS 2359078 2361423 . - . mRNA SPCC70.05c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2361422 2362482 . - . mRNA SPCC70.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC70.05c" ; systematic_id "SPCC70.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 2362248 2362743 . + . misc_RNA SPNCRNA.519 ; db_xref "PMID:18488015" ; synonym "SPNG2613" ; systematic_id "SPNCRNA.519" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB misc_RNA 2363184 2363761 . + . misc_RNA SPNCRNA.520 ; db_xref "PMID:18488015" ; synonym "SPNG2614" ; systematic_id "SPNCRNA.520" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB misc_RNA 2364166 2364826 . + . misc_RNA SPNCRNA.521 ; db_xref "PMID:18488015" ; synonym "SPNG2615" ; systematic_id "SPNCRNA.521" ; controlled_curation "term=; db_xref=PMID:18488015; date=20080430 ||| term=warning, no detectable long open reading frame; date=20071008" ; product "non-coding RNA (predicted)" ; note "warning, this transcript could be on either strand" ;
chromosome3 GeneDB CDS_parts 2364897 2366352 . + . mRNA SPCC70.06 ; db_xref "SPD:51/51D09" ; systematic_id "SPCC70.06" ; colour "7" ; GO "GO:0005643; nuclear pore
GO:0006406; mRNA export from nucleus
GO:0006611; protein export from nucleus
GO:0042274; ribosome small subunit biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC70.06" ; product "nuclear export factor (predicted)" ;
chromosome3 GeneDB CDS 2364897 2365548 . + . mRNA SPCC70.06 ; colour "7" ;
chromosome3 GeneDB CDS 2365585 2366151 . + . mRNA SPCC70.06 ; colour "7" ;
chromosome3 GeneDB CDS 2366195 2366352 . + . mRNA SPCC70.06 ; colour "7" ;
chromosome3 GeneDB misc_feature 2365549 2365554 . + . misc_feature unknown_1875 ; colour "6" ; note "gtaatt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2365574 2365584 . + . misc_feature unknown_1876 ; colour "6" ; note "ctaaccattag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2366353 2366442 . + . mRNA SPCC70.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC70.06" ; systematic_id "SPCC70.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2366517 2366563 . - . mRNA SPCC70.07c ; Alias "tmp1" ; ID "SPCC70.07c" ; db_xref "EMBL:X65868" ; systematic_id "SPCC70.07c" ; primary_name "tmp1" ;
chromosome3 GeneDB CDS_parts 2366564 2367341 . - . mRNA SPCC70.07c ; systematic_id "SPCC70.07c" ; colour "2" ; gene "tmp1 ||| tmp ||| SPCC70.07c" ; Alias "tmp1" ; db_xref "SPD:09/09F11" ; synonym "tmp" ; GO "GO:0004798; thymidylate kinase activity
GO:0006235; dTTP biosynthesis
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR057W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tmp1" ; product "thymidylate kinase Tmp1" ; EC_number "2.7.4.9" ;
chromosome3 GeneDB CDS 2366564 2366866 . - . mRNA SPCC70.07c ; colour "2" ;
chromosome3 GeneDB CDS 2366959 2367155 . - . mRNA SPCC70.07c ; colour "2" ;
chromosome3 GeneDB CDS 2367209 2367341 . - . mRNA SPCC70.07c ; colour "2" ;
chromosome3 GeneDB misc_feature 2366867 2366880 . - . misc_feature unknown_1877 ; colour "6" ; note "ctaacattaagtag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2366867 2366958 . - . intron SPCC70.07c ; Alias "tmp1" ; db_xref "EMBL:X65868" ; systematic_id "SPCC70.07c" ; primary_name "tmp1" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 2366953 2366958 . - . misc_feature unknown_1878 ; colour "6" ; note "gtatat, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2367156 2367180 . - . misc_feature unknown_1879 ; colour "6" ; note "ctaacttgttacgtttactcgatag, splice branch and accepto r" ;
chromosome3 GeneDB intron 2367156 2367208 . - . intron SPCC70.07c ; Alias "tmp1" ; db_xref "EMBL:X65868" ; systematic_id "SPCC70.07c" ; primary_name "tmp1" ; note "confirmed by mRNA" ;
chromosome3 GeneDB misc_feature 2367203 2367208 . - . misc_feature unknown_1880 ; colour "6" ; note "gtaaga, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2367342 2367367 . - . mRNA SPCC70.07c ; Alias "tmp1" ; ID "SPCC70.07c" ; db_xref "EMBL:X65868" ; systematic_id "SPCC70.07c" ; primary_name "tmp1" ;
chromosome3 GeneDB intron 2367368 2367426 . - . intron SPCC70.07c ; Alias "tmp1" ; db_xref "EMBL:X65868" ; systematic_id "SPCC70.07c" ; primary_name "tmp1" ; note "confirmed by mRNA" ;
chromosome3 GeneDB CDS_parts 2367804 2368636 . - . mRNA SPCC70.08c ; db_xref "SPD:10/10G11" ; systematic_id "SPCC70.08c" ; colour "10" ; GO "GO:0008168; methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC70.08c" ; product "methyltransferase (predicted)" ;
chromosome3 GeneDB CDS 2367804 2368569 . - . mRNA SPCC70.08c ; colour "10" ;
chromosome3 GeneDB CDS 2368620 2368636 . - . mRNA SPCC70.08c ; colour "10" ;
chromosome3 GeneDB misc_feature 2368570 2368590 . - . misc_feature unknown_1881 ; colour "6" ; note "ttaacgccagaattgaattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2368614 2368619 . - . misc_feature unknown_1882 ; colour "6" ; note "gtaagc, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 2369108 2369790 . - . mRNA SPCC70.09c ; systematic_id "SPCC70.09c" ; colour "10" ; gene "SPCC70.09c ||| mug9" ; db_xref "SPD:07/07H10" ; Alias "mug9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR295C and YGR273C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug9" ; product "conserved fungal protein" ;
chromosome3 GeneDB CDS 2369108 2369592 . - . mRNA SPCC70.09c ; colour "10" ;
chromosome3 GeneDB CDS 2369649 2369790 . - . mRNA SPCC70.09c ; colour "10" ;
chromosome3 GeneDB misc_feature 2369593 2369608 . - . misc_feature unknown_1883 ; colour "6" ; note "ctaacatcctttccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2369643 2369648 . - . misc_feature unknown_1884 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2370832 2370892 . + . mRNA SPCC70.10 ; ID "SPCC70.10" ; systematic_id "SPCC70.10" ; note "mRNA from SPD146" ;
chromosome3 GeneDB CDS_parts 2370893 2371360 . + . mRNA SPCC70.10 ; systematic_id "SPCC70.10" ; colour "8" ; gene "SPCC70.10" ; note "confirmed by mRNA" ; db_xref "SPD:04/04C08" ; GO "GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 2370893 2371360 . + . mRNA SPCC70.10 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 2371361 2371916 . + . mRNA SPCC70.10 ; ID "SPCC70.10" ; systematic_id "SPCC70.10" ; note "mRNA from SPD146; putative mRNA for SPCC70.10" ;
chromosome3 GeneDB CDS_parts 2371994 2373079 . - . mRNA SPCC1827.08c ; systematic_id "SPCC1827.08c" ; colour "2" ; gene "pof7 ||| SPCC70.11c ||| SPCC1827.08c" ; Alias "pof7" ; db_xref "SPD:16/16H11" ; synonym "SPCC70.11c" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pof7" ; product "F-box protein Pof7" ;
chromosome3 GeneDB CDS 2371994 2373079 . - . mRNA SPCC1827.08c ; colour "2" ;
chromosome3 GeneDB misc_feature 2372930 2373064 . + . misc_feature unknown_1885 ; note "nominal overlap with cosmid SPCC70 and cosmid SPCC1827" ;
chromosome3 GeneDB 5'-UTR 2373078 2373316 . - . mRNA SPCC1827.08c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.08c" ; systematic_id "SPCC1827.08c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2373975 2374119 . - . mRNA SPCC1827.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.01c" ; systematic_id "SPCC1827.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2374120 2376078 . - . mRNA SPCC1827.01c ; db_xref "SPD:27/27A12" ; systematic_id "SPCC1827.01c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0030490; maturation of SSU-rRNA
GO:0032040; small-subunit processome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1827.01c" ; product "U3 associated protein Utp25 (predicted)" ;
chromosome3 GeneDB CDS 2374120 2376078 . - . mRNA SPCC1827.01c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2376077 2376176 . - . mRNA SPCC1827.01c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.01c" ; systematic_id "SPCC1827.01c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2376397 2377038 . - . mRNA SPCC1827.02c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.02c" ; systematic_id "SPCC1827.02c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2377039 2378127 . - . mRNA SPCC1827.02c ; db_xref "SPD:18/18G07" ; systematic_id "SPCC1827.02c" ; colour "7" ; GO "GO:0046474; glycerophospholipid biosynthesis
GO:0004105; choline-phosphate cytidylyltransferase activity
GO:0006657; CDP-choline pathway
GO:0006656; phosphatidylcholine biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR202C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC1827.02c" ; product "cholinephosphate cytidylyltransferase (predicted)" ;
chromosome3 GeneDB CDS 2377039 2378127 . - . mRNA SPCC1827.02c ; colour "7" ;
chromosome3 GeneDB misc_feature 2378079 2378096 . - . misc_feature unknown_1886 ; colour "6" ; note "ctcacaaaagaagaatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2378191 2378196 . - . misc_feature unknown_1887 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB 3'-UTR 2378376 2378484 . - . mRNA SPCC1827.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.03c" ; systematic_id "SPCC1827.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2378485 2380023 . - . mRNA SPCC1827.03c ; db_xref "SPD:44/44H08" ; systematic_id "SPCC1827.03c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005778; peroxisomal membrane
GO:0006631; fatty acid metabolism
GO:0006084; acetyl-CoA metabolism
GO:0016878; acid-thiol ligase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR222C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081116 ||| term=species distribution, conserved in Bacteria; date=20081116 ||| term=species distribution, conserved in Fungi; date=20081116 ||| term=species distribution, conserved in Metazoa; date=20081116 ||| term=species distribution, conserved in Vertebrates; date=20081116 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPCC1827.03c" ; product "acetyl-CoA ligase (predicted)" ;
chromosome3 GeneDB CDS 2378485 2380023 . - . mRNA SPCC1827.03c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2380022 2380411 . - . mRNA SPCC1827.03c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.03c" ; systematic_id "SPCC1827.03c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2380886 2381185 . + . LTR unknown_1888 ; note "degraded TF1-type LTR" ;
chromosome3 GeneDB misc_RNA 2381299 2381802 . - . misc_RNA SPNCRNA.523 ; systematic_id "SPNCRNA.523" ; controlled_curation "term=warning, new gene; db_xref=PMID:18641648; date=20100426" ; product "non-coding RNA (predicted)" ; note "transfrag G" ;
chromosome3 GeneDB 5'-UTR 2382500 2382731 . + . mRNA SPCC1827.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.04" ; systematic_id "SPCC1827.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2382732 2384534 . + . mRNA SPCC1827.04 ; db_xref "SPD:36/36E03" ; systematic_id "SPCC1827.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR049W; date=19700101 ||| term=ankyrin repeat protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human ANKZF1 ortholog; date=20100728" ; colour "10" ; gene "SPCC1827.04" ; product "ankyrin repeat protein, unknown biological role" ;
chromosome3 GeneDB CDS 2382732 2384534 . + . mRNA SPCC1827.04 ; colour "10" ;
chromosome3 GeneDB 3'-UTR 2384535 2384592 . + . mRNA SPCC1827.04 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.04" ; systematic_id "SPCC1827.04" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2384697 2385659 . - . mRNA SPCC1827.05c ; db_xref "SPD:13/13F10" ; systematic_id "SPCC1827.05c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YNL110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1827.05c" ; product "nucleolar RNA-binding protein NIFK (predicted)" ;
chromosome3 GeneDB CDS 2384697 2385104 . - . mRNA SPCC1827.05c ; colour "7" ;
chromosome3 GeneDB CDS 2385182 2385567 . - . mRNA SPCC1827.05c ; colour "7" ;
chromosome3 GeneDB CDS 2385623 2385659 . - . mRNA SPCC1827.05c ; colour "7" ;
chromosome3 GeneDB misc_feature 2385105 2385121 . - . misc_feature unknown_1889 ; colour "6" ; note "ctaactttttgcattag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2385175 2385181 . - . misc_feature unknown_1890 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2385568 2385586 . - . misc_feature unknown_1891 ; colour "6" ; note "ttaactcaattgattttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2385617 2385622 . - . misc_feature unknown_1892 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2385658 2385693 . - . mRNA SPCC1827.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.05c" ; systematic_id "SPCC1827.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2386019 2386149 . - . mRNA SPCC1827.06c ; ID "SPCC1827.06c" ; systematic_id "SPCC1827.06c" ; note "mRNA from SPD129" ;
chromosome3 GeneDB CDS_parts 2386150 2387527 . - . mRNA SPCC1827.06c ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00300; ||| SPD:21/21C12" ; systematic_id "SPCC1827.06c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR158W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009088; threonine biosynthesis
GO:0009086; methionine biosynthesis
GO:0004073; aspartate-semialdehyde dehydrogenase activity" ; gene "SPCC1827.06c" ; product "aspartate semialdehyde dehydrogenase (predicted)" ; EC_number "1.2.1.11" ;
chromosome3 GeneDB CDS 2386150 2387186 . - . mRNA SPCC1827.06c ; colour "7" ;
chromosome3 GeneDB CDS 2387491 2387527 . - . mRNA SPCC1827.06c ; colour "7" ;
chromosome3 GeneDB misc_feature 2387187 2387200 . - . misc_feature unknown_1893 ; colour "6" ; note "ctaaccataaatag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2387187 2387490 . - . intron SPCC1827.06c ; systematic_id "SPCC1827.06c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2387224 2390529 . + . misc_feature unknown_1894 ; note "nominal overlap with cosmid SPCC1827 and plasmid SPCP1E11" ;
chromosome3 GeneDB misc_feature 2387485 2387490 . - . misc_feature unknown_1895 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2387491 2387527 . - . misc_feature unknown_1896 ; note "NB terminal exon of SPCC1827.06c, see c1827 for full length CDS" ;
chromosome3 GeneDB 5'-UTR 2387526 2387563 . - . mRNA SPCC1827.06c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.06c" ; systematic_id "SPCC1827.06c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2388388 2388626 . - . mRNA SPCC1827.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.07c" ; systematic_id "SPCC1827.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2388627 2391071 . - . mRNA SPCC1827.07c ; systematic_id "SPCC1827.07c" ; colour "7" ; gene "SPCP1E11.01c ||| SPCC1827.07c" ; Alias "SPCP1E11.01c" ; db_xref "SPD:28/28G06" ; synonym "SPCP1E11.01c" ; GO "GO:0005886; plasma membrane
GO:0007165; signal transduction
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SPX domain protein; date=19700101 ||| term=EXS family protein; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPCP1E11.01c" ; product "SPX/EXS domain protein (predicted)" ;
chromosome3 GeneDB CDS 2388627 2388785 . - . mRNA SPCC1827.07c ; colour "7" ;
chromosome3 GeneDB CDS 2388861 2389952 . - . mRNA SPCC1827.07c ; colour "7" ;
chromosome3 GeneDB CDS 2390018 2390290 . - . mRNA SPCC1827.07c ; colour "7" ;
chromosome3 GeneDB CDS 2390357 2390706 . - . mRNA SPCC1827.07c ; colour "7" ;
chromosome3 GeneDB CDS 2390759 2390763 . - . mRNA SPCC1827.07c ; colour "7" ;
chromosome3 GeneDB CDS 2390804 2390933 . - . mRNA SPCC1827.07c ; colour "7" ;
chromosome3 GeneDB CDS 2390990 2391015 . - . mRNA SPCC1827.07c ; colour "7" ;
chromosome3 GeneDB CDS 2391058 2391071 . - . mRNA SPCC1827.07c ; colour "7" ;
chromosome3 GeneDB misc_feature 2388786 2388800 . - . misc_feature unknown_1897 ; colour "6" ; note "ctaatttcattatag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2388855 2388860 . - . misc_feature unknown_1898 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2389953 2389970 . - . misc_feature unknown_1899 ; colour "6" ; note "ctaacttgggttatttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2390012 2390017 . - . misc_feature unknown_1900 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2390291 2390307 . - . misc_feature unknown_1901 ; colour "6" ; note "ctaattgtttcaactag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2390351 2390356 . - . misc_feature unknown_1902 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2390707 2390725 . - . misc_feature unknown_1903 ; colour "6" ; note "ctaactgcttttgacctag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2390753 2390758 . - . misc_feature unknown_1904 ; colour "6" ; note "gtacgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2390764 2390775 . - . misc_feature unknown_1905 ; colour "6" ; note "ctaataaaacag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2390798 2390803 . - . misc_feature unknown_1906 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2390934 2390946 . - . misc_feature unknown_1907 ; colour "6" ; note "ctaattcgagtag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2390934 2390989 . - . intron SPCC1827.07c ; systematic_id "SPCC1827.07c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2390984 2390989 . - . misc_feature unknown_1908 ; colour "6" ; note "gtatgc, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2391016 2391027 . - . misc_feature unknown_1909 ; colour "6" ; note "ctaactgtacag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2391016 2391057 . - . intron SPCC1827.07c ; systematic_id "SPCC1827.07c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2391052 2391057 . - . misc_feature unknown_1910 ; colour "6" ; note "gtaagg, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2391070 2391302 . - . mRNA SPCC1827.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC1827.07c" ; systematic_id "SPCC1827.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_RNA 2391631 2391821 . + . misc_RNA SPNCRNA.40 ; Alias "prl40" ; db_xref "EMBL:AB084852 ||| PMID:12597277" ; systematic_id "SPNCRNA.40" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412" ; primary_name "prl40" ; gene "prl40 ||| SPNCRNA.40" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB 5'-UTR 2392235 2392271 . + . mRNA SPCP1E11.02 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.02" ; systematic_id "SPCP1E11.02" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2392272 2394391 . + . mRNA SPCP1E11.02 ; systematic_id "SPCP1E11.02" ; colour "2" ; gene "ppk38 ||| SPCP1E11.02" ; Alias "ppk38" ; db_xref "SPD:37/37D07" ; GO "GO:0030479; actin cortical patch
GO:0004674; protein serine/threonine kinase activity
GO:0000147; actin cortical patch assembly
GO:0006468; protein amino acid phosphorylation
GO:0007015; actin filament organization
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0007165; signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNL020C and YIL095W and YBR059C; date=19700101 ||| term=modification, phosphorylated; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk38" ; product "Ark1/Prk1 family protein kinase Ppk38" ;
chromosome3 GeneDB CDS 2392272 2392395 . + . mRNA SPCP1E11.02 ; colour "2" ;
chromosome3 GeneDB CDS 2392441 2392571 . + . mRNA SPCP1E11.02 ; colour "2" ;
chromosome3 GeneDB CDS 2392640 2393087 . + . mRNA SPCP1E11.02 ; colour "2" ;
chromosome3 GeneDB CDS 2393142 2394391 . + . mRNA SPCP1E11.02 ; colour "2" ;
chromosome3 GeneDB misc_feature 2392396 2392401 . + . misc_feature unknown_1911 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2392423 2392440 . + . misc_feature unknown_1912 ; colour "6" ; note "ttaacagcgtatctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2392572 2392577 . + . misc_feature unknown_1913 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2392622 2392639 . + . misc_feature unknown_1914 ; colour "6" ; note "ctaacgacttgtctttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2393088 2393093 . + . misc_feature unknown_1915 ; colour "6" ; note "gtatgg, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2393125 2393141 . + . misc_feature unknown_1916 ; colour "6" ; note "ttaacactagcttttag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2394557 2394694 . + . intron SPCP1E11.03 ; systematic_id "SPCP1E11.03" ;
chromosome3 GeneDB CDS_parts 2394675 2396096 . + . mRNA SPCP1E11.03 ; systematic_id "SPCP1E11.03" ; colour "10" ; gene "SPCP1E11.03 ||| mug170" ; Alias "mug170" ; db_xref "SPD:23/23B05" ; GO "GO:0005737; cytoplasm
GO:0005509; calcium ion binding
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug170" ; product "arrestin" ;
chromosome3 GeneDB CDS 2394675 2395324 . + . mRNA SPCP1E11.03 ; colour "10" ;
chromosome3 GeneDB CDS 2395363 2395612 . + . mRNA SPCP1E11.03 ; colour "10" ;
chromosome3 GeneDB CDS 2395671 2396002 . + . mRNA SPCP1E11.03 ; colour "10" ;
chromosome3 GeneDB CDS 2396048 2396096 . + . mRNA SPCP1E11.03 ; colour "10" ;
chromosome3 GeneDB misc_feature 2395325 2395330 . + . misc_feature unknown_1917 ; colour "6" ; note "gtaaaa, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2395351 2395362 . + . misc_feature unknown_1918 ; colour "6" ; note "ctgacatcttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2395613 2395618 . + . misc_feature unknown_1919 ; colour "6" ; note "gtaaag, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2395657 2395670 . + . misc_feature unknown_1920 ; colour "6" ; note "ctaactctcaaaag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2396003 2396008 . + . misc_feature unknown_1921 ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2396036 2396047 . + . misc_feature unknown_1922 ; note "ctaacaagatag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2396097 2396196 . + . mRNA SPCP1E11.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.03" ; systematic_id "SPCP1E11.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2396250 2396624 . - . mRNA SPCP1E11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.04c" ; systematic_id "SPCP1E11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2396625 2398148 . - . mRNA SPCP1E11.04c ; systematic_id "SPCP1E11.04c" ; colour "2" ; gene "pal1 ||| SPCP1E11.04c" ; db_xref "SPD:24/24G04" ; Alias "pal1" ; GO "GO:0032153; cell division site
GO:0051286; cell tip
GO:0031097; medial ring
GO:0030427; site of polarized growth
GO:0005515; protein binding
GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0008360; regulation of cell shape" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR348C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, Pears And Lemons; db_xref=PMID:15975911; cv=name_description; date=20100126 ||| term=phenotype, cell morphology, pear shaped; db_xref=PMID:15975911; date=20100126 ||| term=phenotype, cell morphology, lemon shaped; db_xref=PMID:15975911; date=20100126" ; primary_name "pal1" ; product "membrane associated protein Pal1" ;
chromosome3 GeneDB CDS 2396625 2397737 . - . mRNA SPCP1E11.04c ; colour "2" ;
chromosome3 GeneDB CDS 2397984 2398148 . - . mRNA SPCP1E11.04c ; colour "2" ;
chromosome3 GeneDB misc_feature 2397738 2397752 . - . misc_feature unknown_1923 ; colour "6" ; note "ctaacattttaccag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2397978 2397983 . - . misc_feature unknown_1924 ; colour "6" ; note "gtaaat, splice donor sequence" ;
chromosome3 GeneDB 5'-UTR 2398147 2398232 . - . mRNA SPCP1E11.04c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.04c" ; systematic_id "SPCP1E11.04c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2398508 2398954 . - . mRNA SPCP1E11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.05c" ; systematic_id "SPCP1E11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2398955 2400373 . - . mRNA SPCP1E11.05c ; systematic_id "SPCP1E11.05c" ; colour "7" ; gene "SPCP1E11.05c" ; Alias "are2" ; db_xref "SPD:44/44E09" ; GO "GO:0005783; endoplasmic reticulum
GO:0034737; ergosterol O-acyltransferase activity
GO:0006696; ergosterol metabolic process
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR048W and YNR019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "are2" ; product "acyl-coA-sterol acyltransferase Are2 (predicted)" ; reserved_name "are2" ;
chromosome3 GeneDB CDS 2398955 2400373 . - . mRNA SPCP1E11.05c ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2400372 2400815 . - . mRNA SPCP1E11.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.05c" ; systematic_id "SPCP1E11.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2400868 2401095 . + . LTR unknown_1925 ; note "TF1 LTR" ;
chromosome3 GeneDB CDS_parts 2401980 2404577 . + . mRNA SPCP1E11.06 ; systematic_id "SPCP1E11.06" ; colour "2" ; gene "apl4 ||| SPCP1E11.06" ; Alias "apl4" ; db_xref "SPD:38/38E09" ; GO "GO:0030276; clathrin binding
GO:0016197; endosome transport
GO:0030121; AP-1 adaptor complex
GO:0005794; Golgi apparatus
GO:0005768; endosome
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YPR029C; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=phenotype, sensitive to FK605; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=warning, multiple translational start sites possible; date=20100715" ; primary_name "apl4" ; product "AP-1 adaptor complex gamma subunit Apl4" ;
chromosome3 GeneDB CDS 2401980 2404577 . + . mRNA SPCP1E11.06 ; colour "2" ;
chromosome3 GeneDB 3'-UTR 2404578 2404723 . + . mRNA SPCP1E11.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.06" ; systematic_id "SPCP1E11.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2404996 2405114 . - . mRNA SPCP1E11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.07c" ; systematic_id "SPCP1E11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2405115 2405543 . - . mRNA SPCP1E11.07c ; systematic_id "SPCP1E11.07c" ; colour "2" ; gene "cwf18 ||| SPCP1E11.07c" ; Alias "cwf18" ; db_xref "SPD:03/03E07" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf18" ; product "complexed with Cdc5 protein Cwf18" ;
chromosome3 GeneDB CDS 2405115 2405543 . - . mRNA SPCP1E11.07c ; colour "2" ;
chromosome3 GeneDB 5'-UTR 2405542 2405823 . - . mRNA SPCP1E11.07c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.07c" ; systematic_id "SPCP1E11.07c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2405874 2406228 . - . LTR unknown_1926 ; note "TF1 LTR" ;
chromosome3 GeneDB CDS_parts 2406373 2407346 . + . mRNA SPCP1E11.08 ; db_xref "SPD:13/13H10" ; systematic_id "SPCP1E11.08" ; colour "7" ; GO "GO:0042273; ribosomal large subunit biogenesis
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER126C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCP1E11.08" ; product "ribosome biogenesis protein Nsa2 (predicted)" ;
chromosome3 GeneDB CDS 2406373 2406443 . + . mRNA SPCP1E11.08 ; colour "7" ;
chromosome3 GeneDB CDS 2406504 2406623 . + . mRNA SPCP1E11.08 ; colour "7" ;
chromosome3 GeneDB CDS 2406755 2407346 . + . mRNA SPCP1E11.08 ; colour "7" ;
chromosome3 GeneDB misc_feature 2406444 2406449 . + . misc_feature unknown_1927 ; colour "6" ; note "gtgagt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2406486 2406503 . + . misc_feature unknown_1928 ; colour "6" ; note "ttaacacttctatttcag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2406624 2406629 . + . misc_feature unknown_1929 ; colour "6" ; note "gtatgt, splice donor sequence" ;
chromosome3 GeneDB misc_feature 2406742 2406754 . + . misc_feature unknown_1930 ; colour "6" ; note "ctaactctatcag, splice branch and acceptor" ;
chromosome3 GeneDB 3'-UTR 2407347 2407526 . + . mRNA SPCP1E11.08 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.08" ; systematic_id "SPCP1E11.08" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB 3'-UTR 2407803 2407808 . - . mRNA SPCP1E11.09c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.09c" ; systematic_id "SPCP1E11.09c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2407809 2408293 . - . mRNA SPCP1E11.09c ; systematic_id "SPCP1E11.09c" ; colour "2" ; gene "rpp103 ||| rpp1-3 ||| SPCP1E11.09c" ; Alias "rpp103" ; db_xref "SPD:04/04E05" ; synonym "rpp1-3" ; GO "GO:0006414; translational elongation
GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL081C and YDL130W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081203 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpp103" ; product "60S acidic ribosomal protein Rpp1-3" ;
chromosome3 GeneDB CDS 2407809 2408069 . - . mRNA SPCP1E11.09c ; colour "2" ;
chromosome3 GeneDB CDS 2408225 2408293 . - . mRNA SPCP1E11.09c ; colour "2" ;
chromosome3 GeneDB misc_feature 2408070 2408085 . - . misc_feature unknown_1931 ; colour "6" ; note "ctaacaaaacttctag, splice branch and acceptor" ;
chromosome3 GeneDB intron 2408070 2408224 . - . intron SPCP1E11.09c ; systematic_id "SPCP1E11.09c" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2408219 2408224 . - . misc_feature unknown_1932 ; colour "6" ; note "gtaagt, splice donor sequence" ;
chromosome3 GeneDB CDS_parts 2408742 2409461 . + . mRNA SPCP1E11.10 ; db_xref "SPD:08/08E08" ; systematic_id "SPCP1E11.10" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCR051W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCP1E11.10" ; product "ankyrin repeat protein, unknown biological role" ;
chromosome3 GeneDB CDS 2408742 2408804 . + . mRNA SPCP1E11.10 ; colour "10" ;
chromosome3 GeneDB CDS 2408859 2408937 . + . mRNA SPCP1E11.10 ; colour "10" ;
chromosome3 GeneDB CDS 2408980 2409461 . + . mRNA SPCP1E11.10 ; colour "10" ;
chromosome3 GeneDB misc_feature 2408805 2408810 . + . misc_feature unknown_1933 ; colour "6" ; note "gtacga, splice donor sequence" ;
chromosome3 GeneDB intron 2408805 2408858 . + . intron SPCP1E11.10 ; systematic_id "SPCP1E11.10" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2408844 2408858 . + . misc_feature unknown_1934 ; colour "6" ; note "ctaactattccttag, splice branch and acceptor" ;
chromosome3 GeneDB misc_feature 2408938 2408943 . + . misc_feature unknown_1935 ; colour "6" ; note "gtattt, splice donor sequence" ;
chromosome3 GeneDB intron 2408938 2408979 . + . intron SPCP1E11.10 ; systematic_id "SPCP1E11.10" ; note "confirmed intron" ;
chromosome3 GeneDB misc_feature 2408969 2408979 . + . misc_feature unknown_1936 ; colour "6" ; note "ctaactgtcag, splice branch and acceptor" ;
chromosome3 GeneDB CDS_parts 2409922 2411850 . + . mRNA SPCP1E11.11 ; systematic_id "SPCP1E11.11" ; colour "7" ; gene "SPCP1E11.11" ; Alias "puf6" ; db_xref "SPD:26/26H03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YDR496C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005730; nucleolus
GO:0042273; ribosomal large subunit biogenesis
GO:0017148; negative regulation of translation
GO:0000900; translation repressor activity, mRNA binding
GO:0003730; mRNA binding 3'-UTR binding" ; primary_name "puf6" ; product "Puf family RNA-binding protein Puf6 (predicted)" ; reserved_name "puf6" ;
chromosome3 GeneDB CDS 2409922 2411850 . + . mRNA SPCP1E11.11 ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2411851 2411871 . + . mRNA SPCP1E11.11 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCP1E11.11" ; systematic_id "SPCP1E11.11" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB misc_feature 2412156 2412280 . + . misc_feature unknown_1937 ; note "nominal overlap with plasmid SPCP1E11 and cosmid SPCC24E4" ;
chromosome3 GeneDB CDS_parts 2412365 2412988 . + . mRNA SPCC569.08c ; systematic_id "SPCC569.08c" ; colour "7" ; obsolete_name "ade8" ; db_xref "SPD:07/07B01" ; Alias "ade5" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0006189; 'de novo' IMP biosynthesis
GO:0004644; phosphoribosylglycinamide formyltransferase activity
GO:0046084; adenine biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR408C; date=19700101 ||| term=warning, named from map position ade5; cv=warning; date=20100326 ||| term=warning, gene name conflict; date=20100326 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "ade5" ; product "phosphoribosylglycinamide formyltransferase (predicted)" ; EC_number "2.1.2.2" ;
chromosome3 GeneDB CDS 2412365 2412988 . + . mRNA SPCC569.08c ; colour "7" ;
chromosome3 GeneDB misc_feature 2412395 2413154 . - . misc_feature unknown_1938 ; note "nominal overlap with cosmid SPCC569 S. pombe chromosome 3" ;
chromosome3 GeneDB CDS_parts 2414254 2414553 . + . mRNA SPCC569.09 ; db_xref "PMID:18488015" ; obsolete_name "SPNCRNA.522" ; systematic_id "SPCC569.09" ; synonym "SPNG2623" ; colour "8" ; controlled_curation "term=warning, new gene; cv=warning; db_xref=PMID:18488015; date=20080513 ||| term=species distribution, sequence orphan, uncharacterised; date=20090114 ||| term=species distribution, sequence orphan; date=20090114 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, this may be a none coding RNA; cv=warning; date=20100127" ; gene "SPCC569.09" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 2414254 2414553 . + . mRNA SPCC569.09 ; colour "8" ;
chromosome3 GeneDB 3'-UTR 2415061 2415648 . - . mRNA SPCC569.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC569.07" ; systematic_id "SPCC569.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2415649 2417061 . - . mRNA SPCC569.07 ; db_xref "SPD:44/44E06" ; systematic_id "SPCC569.07" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0009072; aromatic amino acid family metabolism
GO:0008793; aromatic-amino-acid transaminase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL202W and YHR137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC569.07" ; product "aromatic aminotransferase (predicted)" ;
chromosome3 GeneDB CDS 2415649 2417061 . - . mRNA SPCC569.07 ; colour "7" ;
chromosome3 GeneDB 5'-UTR 2417060 2417262 . - . mRNA SPCC569.07 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC569.07" ; systematic_id "SPCC569.07" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2418126 2418384 . + . LTR unknown_1939 ; note "Tf2-type LTR" ;
chromosome3 GeneDB repeat_region 2418712 2419547 . + . repeat_region unknown_1940 ; note "duplicated region in c1884 S. pombe chromosome 3" ;
chromosome3 GeneDB misc_RNA 2419051 2419799 . + . misc_RNA SPNCRNA.29 ; systematic_id "SPNCRNA.29" ; gene "meu19 ||| prl29 ||| SPNCRNA.29" ; note "duplicated in c1884" ; Alias "meu19" ; db_xref "EMBL:AB084841 ||| PMID:12597277" ; synonym "prl29" ; controlled_curation "term=warning, no detectable long open reading frame; qualifier=predicted; db_xref=PMID:12597277; date=20050412 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; qualifier=predicted; db_xref=EMBL:AB084841; date=20050412 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100317" ; primary_name "meu19" ; product "non-coding RNA, poly(A)-bearing (predicted)" ;
chromosome3 GeneDB misc_feature 2419718 2419800 . - . misc_feature unknown_1941 ; note "highly similar to region in SPCC1884 S. pombe chromosome 3" ;
chromosome3 GeneDB 3'-UTR 2420452 2420663 . - . mRNA SPCC569.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC569.06" ; systematic_id "SPCC569.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2420664 2422100 . - . mRNA SPCC569.06 ; db_xref "SPD:23/23B10" ; systematic_id "SPCC569.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPCC569.06" ; product "S. pombe specific multicopy membrane protein family 1" ;
chromosome3 GeneDB CDS 2420664 2422100 . - . mRNA SPCC569.06 ; colour "12" ;
chromosome3 GeneDB 5'-UTR 2422099 2422268 . - . mRNA SPCC569.06 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC569.06" ; systematic_id "SPCC569.06" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB LTR 2422329 2422687 . + . LTR unknown_1942 ; note "Tf1-type LTR" ;
chromosome3 GeneDB 5'-UTR 2424192 2424335 . + . mRNA SPCC569.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC569.05c" ; systematic_id "SPCC569.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2424336 2426066 . + . mRNA SPCC569.05c ; db_xref "SPD:35/35G04" ; systematic_id "SPCC569.05c" ; colour "7" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC569.05c" ; product "spermidine family transporter (predicted)" ;
chromosome3 GeneDB CDS 2424336 2426066 . + . mRNA SPCC569.05c ; colour "7" ;
chromosome3 GeneDB 3'-UTR 2426067 2426555 . + . mRNA SPCC569.05c ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC569.05c" ; systematic_id "SPCC569.05c" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2427219 2427584 . - . mRNA SPCC569.04 ; systematic_id "SPCC569.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC569.04" ; product "sequence orphan" ;
chromosome3 GeneDB CDS 2427219 2427584 . - . mRNA SPCC569.04 ; colour "8" ;
chromosome3 GeneDB misc_feature 2427222 2427476 . + . misc_feature unknown_1943 ;
chromosome3 GeneDB repeat_region 2427780 2430440 . + . repeat_region unknown_1944 ; note "duplicated region in c1884" ;
chromosome3 GeneDB 3'-UTR 2430297 2430333 . - . mRNA SPCC569.03 ; db_xref "PMID:18641648 ||| PMID:19233281" ; ID "SPCC569.03" ; systematic_id "SPCC569.03" ; note "This UTR was defined manually in PMID:19233281 from transcriptome data in PMID:18641648, transcription start or end may not be exact" ;
chromosome3 GeneDB CDS_parts 2430334 2431524 . - . mRNA SPCC569.03 ; db_xref "SPD:19/19A04" ; systematic_id "SPCC569.03" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20081212 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0070263; external side of fungal-type cell wall" ; gene "SPCC569.03" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 4" ;
chromosome3 GeneDB CDS 2430334 2431524 . - . mRNA SPCC569.03 ; colour "10" ;
chromosome3 GeneDB LTR 2432243 2432411 . + . LTR unknown_1945 ; note "Tf1-type LTR" ;
chromosome3 GeneDB CDS_parts 2432612 2432953 . + . mRNA SPCC569.02c ; db_xref "SPD:02/02A12" ; systematic_id "SPCC569.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20071122 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPCC569.02c" ; product "S. pombe specific UPF0321 family protein 2" ;
chromosome3 GeneDB CDS 2432612 2432953 . + . mRNA SPCC569.02c ; colour "12" ;
chromosome3 GeneDB repeat_region 2434116 2435862 . + . repeat_region unknown_1946 ; note "duplicated region in c337" ;
chromosome3 GeneDB CDS_parts 2434691 2435662 . + . mRNA SPCC569.01c ; db_xref "SPD:41/41H05" ; systematic_id "SPCC569.01c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20081212 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0010339; external side of cell wall" ; gene "SPCC569.01c" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 5" ;
chromosome3 GeneDB CDS 2434691 2435662 . + . mRNA SPCC569.01c ; colour "10" ;
chromosome3 GeneDB LTR 2437467 2437780 . + . LTR unknown_1947 ; note "Tf2-type LTR" ;
chromosome3 GeneDB misc_feature 2439540 2447392 . + . misc_feature unknown_1948 ; note "18S, 5.8S, and 28S ribosomal RNA" ;
chromosome3 GeneDB rRNA 2440994 2442835 . + . rRNA SPRRNA.46 ; synonym "SPRRNA.08" ; systematic_id "SPRRNA.46" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "18S ribosomal RNA" ;
chromosome3 GeneDB rRNA 2443248 2443412 . + . rRNA SPRRNA.52 ; synonym "SPRRNA.08" ; systematic_id "SPRRNA.52" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "5.8S ribosomal RNA" ;
chromosome3 GeneDB rRNA 2443713 2447197 . + . rRNA SPRRNA.49 ; synonym "SPRRNA.08" ; systematic_id "SPRRNA.49" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "28S ribosomal RNA" ;
chromosome3 GeneDB rep_origin 2448416 2449451 . + . rep_origin unknown_1949 ; note "region highly similar to ars3001, boundaries not exact" ;
chromosome3 GeneDB misc_feature 2450422 2452883 . + . misc_feature unknown_1950 ; note "18S, 5.8S, and 28S ribosomal RNA" ;
chromosome3 GeneDB rRNA 2451883 2452883 . + . rRNA SPRRNA.45 ; synonym "SPRRNA.09" ; systematic_id "SPRRNA.45" ; GO "GO:0003735; structural constituent of ribosome
GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0006412; translation" ; product "18S ribosomal RNA" ;
chromosome3 GeneDB RealContig 1 2452883 . . . RealContig chromosome3
chromosome3 GeneDB 5'-UTR 630838 631529 . - . mRNA SPCC31H12.05c ; systematic_id "SPCC31H12.05c" ;
chromosome3 GeneDB 5'-UTR 708330 708339 . + . mRNA SPCPJ732.03 ; systematic_id "SPCPJ732.03" ;
chromosome3 GeneDB 5'-UTR 927733 927998 . + . mRNA SPCC24B10.15 ; systematic_id "SPCC24B10.15" ;
chromosome3 GeneDB 5'-UTR 1609642 1609809 . + . mRNA SPCC777.07 ; systematic_id "SPCC777.07" ;
chromosome3 GeneDB 3'-UTR 1641243 1641395 . + . mRNA SPCC663.04 ; systematic_id "SPCC663.04" ;
chromosome3 GeneDB 5'-UTR 2012830 2012841 . + . mRNA SPCC1906.01 ; systematic_id "SPCC1906.01" ;
chromosome3 GeneDB 5'-UTR 2306049 2306291 . + . mRNA SPCC965.12 ; systematic_id "SPCC965.12" ;
chromosome3 GeneDB 5'-UTR 2367427 2367471 . - . mRNA SPCC70.07c ; systematic_id "SPCC70.07c" ;
chromosome3 GeneDB mRNA 459886 461756 . + . mRNA SPCC4G3.07c ; systematic_id "SPCC4G3.07c" ; colour "2" ; gene "phf1 ||| SPCC4G3.07c ||| swp1 ||| saf50" ; Alias "phf1" ; db_xref "SPD:44/44D07" ; synonym "swp1 ||| saf50" ; GO "GO:0033193; Lsd1/2 complex
GO:0031491; nucleosome binding
GO:0033169; histone H3-K9 demethylation
GO:0034605; cellular response to heat
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=20061218 ||| term=zf-PHD finger; date=20061218 ||| term=name description, SWm associated Phd1; cv=name_description; db_xref=PMID:17440621; date=20061218 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17434129; date=20070421 ||| term=human retinoblastoma binding protein 2-like; date=19700101 ||| term=similar to S. pombe SPAC30D11.08c (paralog); date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "phf1" ; product "PHD finger containing protein Phf1" ;
chromosome3 GeneDB mRNA 537326 539910 . + . mRNA SPCP31B10.07 ; systematic_id "SPCP31B10.07" ; colour "2" ; gene "eft202 ||| SPCP31B10.07" ; db_xref "SPD:29/29C06" ; Alias "eft202" ; GO "GO:0003746; translation elongation factor activity
GO:0005525; GTP binding
GO:0006414; translational elongation
GO:0005840; ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR133W and YDR385W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "eft202" ; product "translation elongation factor 2 (EF-2) Eft2,B" ;
chromosome3 GeneDB mRNA 281850 282411 . + . mRNA SPCC553.11c ; db_xref "SPD:05/05A06" ; systematic_id "SPCC553.11c" ; colour "7" ; GO "GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0005672; transcription factor TFIIA complex
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL058W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC553.11c" ; product "transcription factor TFIIA complex small subunit (predicted)" ;
chromosome3 GeneDB mRNA 118222 119002 . - . mRNA SPCC330.06c ; db_xref "SPD:04/04C12" ; systematic_id "SPCC330.06c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0008379; thioredoxin peroxidase activity
GO:0045454; cell redox homeostasis
GO:0034599; cellular response to oxidative stress
GO:0033554; cellular response to stress
GO:0019430; removal of superoxide radicals
GO:0042744; hydrogen peroxide catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR109W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111" ; gene "SPCC330.06c" ; product "thioredoxin peroxidase (predicted)" ;
chromosome3 GeneDB mRNA 2183620 2187362 . + . mRNA SPCC830.03 ; db_xref "SPD:28/28C02" ; systematic_id "SPCC830.03" ; colour "7" ; GO "GO:0005634; nucleus
GO:0051731; polynucleotide kinase activity
GO:0006363; termination of RNA polymerase I transcription
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL035W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human NOL9 ortholog; date=20100906" ; gene "SPCC830.03" ; product "polynucleotide kinase Grc3 (predicted)" ;
chromosome3 GeneDB mRNA 384207 385868 . + . mRNA SPCC1682.07 ; systematic_id "SPCC1682.07" ; colour "2" ; gene "ssl1 ||| SPCC1682.07" ; Alias "ssl1" ; obsolete_name "tfh47" ; db_xref "SPD:21/21F04" ; GO "GO:0005675; transcription factor TFIIH complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0006281; DNA repair
GO:0016251; general RNA polymerase II transcription factor activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YLR005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human GTF2H2 ortholog; date=20110113" ; primary_name "ssl1" ; product "transcription factor TFIIH complex subunit Ssl1" ;
chromosome3 GeneDB mRNA 310539 312816 . + . mRNA SPCC553.01c ; systematic_id "SPCC553.01c" ; colour "7" ; gene "SPCC553.01c ||| SPCC736.01c" ; db_xref "SPD:25/25C07" ; synonym "SPCC736.01c" ; GO "GO:0045132; meiotic chromosome segregation" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human FLJ11331 ortholog; date=20061212 ||| term=orthologous to S. cerevisiae YGR042W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "meiotic chromosome segregation protein (predicted)" ;
chromosome3 GeneDB mRNA 1542376 1544581 . - . mRNA SPCC1753.02c ; systematic_id "SPCC1753.02c" ; colour "2" ; gene "git3 ||| SPCC1753.02c" ; Alias "git3" ; db_xref "SPD:21/21F11" ; GO "GO:0005886; plasma membrane
GO:0045014; negative regulation of transcription by glucose
GO:0007186; G-protein coupled receptor protein signaling pathway
GO:0004930; G-protein coupled receptor activity
GO:0007190; adenylate cyclase activation
GO:0051594; detection of glucose" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDL035C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, Glucose Insensitive Transcription; cv=name_description; date=20090505 ||| term=phenotype, glucose repression defects; cv=phenotype; date=20090505" ; primary_name "git3" ; product "G-protein coupled receptor Git3" ;
chromosome3 GeneDB mRNA 340645 342076 . - . mRNA SPCC736.13 ; db_xref "SPD:15/15C04" ; systematic_id "SPCC736.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR246C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC736.13" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB mRNA 2053548 2056571 . + . mRNA SPCC1739.12 ; systematic_id "SPCC1739.12" ; colour "2" ; gene "ppe1 ||| SPCC1739.12 ||| esp1 ||| ppx1" ; Alias "ppe1" ; db_xref "SPD:12/12G06" ; synonym "esp1 ||| ppx1" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0006470; protein amino acid dephosphorylation
GO:0007346; regulation of mitotic cell cycle
GO:0051983; regulation of chromosome segregation
GO:0005634; nucleus
GO:0005515; protein binding
GO:0008360; regulation of cell shape
GO:0005515; protein binding
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL047W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Extragenic Suppressor of Pim; cv=name_description; date=20091204" ; primary_name "ppe1" ; product "serine/threonine protein phosphatase Ppe1" ; EC_number "3.1.3.16" ;
chromosome3 GeneDB mRNA 1571465 1574440 . - . mRNA SPCC162.07 ; systematic_id "SPCC162.07" ; colour "2" ; gene "SPCC162.07 ||| ent1" ; Alias "ent1" ; db_xref "SPD:46/46H04" ; GO "GO:0030479; actin cortical patch
GO:0006897; endocytosis
GO:0000147; actin cortical patch assembly
GO:0030276; clathrin binding
GO:0043130; ubiquitin binding
GO:0005546; phosphatidylinositol-4,5-bisphosphate binding
GO:0007015; actin filament organization
GO:0005096; GTPase activator activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15659877; date=19700101 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL161W and YLR206W and YLL038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ent1" ; product "epsin" ;
chromosome3 GeneDB mRNA 984466 985137 . - . mRNA SPCC1795.07 ; db_xref "SPD:42/42C03" ; systematic_id "SPCC1795.07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL081C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation" ; gene "SPCC1795.07" ; product "mitochondrial ribosomal protein subunit S37 (predicted)" ;
chromosome3 GeneDB mRNA 806262 808855 . - . mRNA SPCC1393.07c ; systematic_id "SPCC1393.07c" ; colour "8" ; gene "SPCC1393.07c ||| mug4" ; note "possibly a glycoprotein" ; Alias "mug4" ; db_xref "SPD:38/38E08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug4" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 124276 127050 . + . mRNA SPCC330.08 ; systematic_id "SPCC330.08" ; colour "2" ; gene "alg11 ||| gmd3 ||| SPCC330.08" ; Alias "alg11" ; db_xref "SPD:44/44E07" ; synonym "gmd3" ; GO "GO:0000026; alpha-1,2-mannosyltransferase activity
GO:0006486; protein amino acid glycosylation
GO:0005783; endoplasmic reticulum
GO:0006487; protein amino acid N-linked glycosylation
GO:0000136; mannosyltransferase complex subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "alg11" ; product "alpha-1,2-mannosyltransferase Alg11" ; EC_number "2.4.1.-" ;
chromosome3 GeneDB mRNA 1972750 1973795 . - . mRNA SPCC18.09c ; db_xref "SPD:13/13A12" ; systematic_id "SPCC18.09c" ; colour "7" ; GO "GO:0000166; nucleotide binding
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0016787; hydrolase activity
GO:0006281; DNA repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HIT family; date=19700101 ||| term=orthologous to S. cerevisiae YOR258W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC18.09c" ; product "human aprataxin homolog, involved in DNA repair (predicted)" ;
chromosome3 GeneDB mRNA 1698190 1699497 . - . mRNA SPCC417.11c ; db_xref "SPD:22/22G06" ; systematic_id "SPCC417.11c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0042286; glutamate-1-semialdehyde 2,1- aminomutase activity
GO:0006779; porphyrin biosynthesis" ; gene "SPCC417.11c" ; product "glutamate-1-semialdehyde 2,1- aminomutaseaminotransferase (predicted)" ; EC_number "5.4.3.8" ;
chromosome3 GeneDB mRNA 1185888 1186167 . - . mRNA SPCC550.01c ; db_xref "SPD:42/42A02" ; systematic_id "SPCC550.01c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CHCH domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR218C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005758; mitochiondrial intermembrane space
GO:0033108; mitochondrial respiratory chain complex assembly" ; gene "SPCC550.01c" ; product "mitochondrial respiratory chain complex assembly protein (predicted)" ;
chromosome3 GeneDB mRNA 511862 513785 . - . mRNA SPCC970.02 ; db_xref "SPD:24/24C06" ; systematic_id "SPCC970.02" ; colour "7" ; GO "GO:0031362; anchored to external side of plasma membrane
GO:0008496; mannan endo-1,6-alpha-mannosidase activity
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0051692; cellular oligosaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL046C and YMR238W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; gene "SPCC970.02" ; product "mannan endo-1,6-alpha-mannosidase (predicted)" ;
chromosome3 GeneDB mRNA 2378376 2380411 . - . mRNA SPCC1827.03c ; db_xref "SPD:44/44H08" ; systematic_id "SPCC1827.03c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005778; peroxisomal membrane
GO:0006631; fatty acid metabolism
GO:0006084; acetyl-CoA metabolism
GO:0016878; acid-thiol ligase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR222C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081116 ||| term=species distribution, conserved in Bacteria; date=20081116 ||| term=species distribution, conserved in Fungi; date=20081116 ||| term=species distribution, conserved in Metazoa; date=20081116 ||| term=species distribution, conserved in Vertebrates; date=20081116 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPCC1827.03c" ; product "acetyl-CoA ligase (predicted)" ;
chromosome3 GeneDB mRNA 872276 874056 . - . mRNA SPCC16A11.03c ; db_xref "SPD:35/35E06" ; systematic_id "SPCC16A11.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101" ; colour "10" ; gene "SPCC16A11.03c" ; product "DUF2009 protein" ;
chromosome3 GeneDB mRNA 473635 475615 . - . mRNA SPCC364.06 ; systematic_id "SPCC364.06" ; colour "2" ; gene "SPCC364.06" ; Alias "nap1" ; db_xref "SPD:43/43H11" ; synonym "nap11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18474252; date=20080827 ||| term=phenotype, resistance to benomyl; qualifier=deletion; cv=phenotype; db_xref=PMID:18474252; date=20080827 ||| term=phenotype, DNA replication checkpoint, activated; qualifier=required|deletion; cv=phenotype; db_xref=PMID:18474252; date=20080827 ||| term=orthologous to S. cerevisiae YKR048C; date=19700101 ||| term=misc functional group, histone chaperone; cv=m_f_g; date=20080827 ||| term=misc, overlapping genome wide occupancy in coding regions Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=misc, overlapping genome wide occupancy in promoters Nap1/Hrp1/Hrp3; db_xref=PMID:17510629; cv=misc; date=20080827 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; GO "GO:0000790; nuclear chromatin
GO:0042393; histone binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006336; DNA-replication independent nucleosome assembly
GO:0006334; nucleosome assembly
GO:0006606; protein import into nucleus
GO:0006366; transcription from RNA polymerase II promoter
GO:0007089; traversing start control point of mitotic cell cycle
GO:0007089; traversing start control point of mitotic cell cycle
GO:0006337; nucleosome disassembly" ; primary_name "nap1" ; product "nucleosome assembly protein Nap1" ;
chromosome3 GeneDB mRNA 2300660 2301816 . + . mRNA SPCC965.09 ; db_xref "SPD:10/10E10" ; systematic_id "SPCC965.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR351C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human NIT2 ortholog; date=20100728" ; colour "10" ; gene "SPCC965.09" ; product "nitrilase family protein, omega-amidase related (predicted)" ;
chromosome3 GeneDB mRNA 1778105 1779535 . + . mRNA SPCC1442.06 ; systematic_id "SPCC1442.06" ; colour "7" ; gene "pre8 ||| SPCC1442.06" ; Alias "pre8" ; db_xref "SPD:15/15G06" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML092C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116" ; GO "GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; primary_name "pre8" ; product "20S proteasome component alpha 2, Pre8 (predicted)" ; EC_number "3.4.25.1" ;
chromosome3 GeneDB mRNA 1162657 1164086 . - . mRNA SPCC4B3.07 ; systematic_id "SPCC4B3.07" ; colour "2" ; gene "SPCC4B3.07" ; Alias "nro1" ; db_xref "SPD:18/18G04" ; GO "GO:0005643; nuclear pore
GO:0005634; nucleus
GO:0006913; nucleocytoplasmic transport
GO:0045893; positive regulation of transcription, DNA-dependent
GO:0005634; nucleus
GO:0006994; positive regulation of sterol regulatory element binding protein target gene transcription involved in sterol depletion response
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YOR051C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; cv=phenotype; qualifier=deletion; db_xref=PMID:19158663; date=20090428" ; primary_name "nro1" ; product "nuclear pore complex associated protein" ;
chromosome3 GeneDB mRNA 2081247 2081606 . - . mRNA SPCC576.19c ; db_xref "SPD:51/51H01" ; systematic_id "SPCC576.19c" ; colour "6" ; gene "SPCC576.19c" ; product "dubious" ;
chromosome3 GeneDB mRNA 1630267 1632161 . + . mRNA SPCC663.02 ; systematic_id "SPCC663.02" ; colour "12" ; gene "wtf14 ||| SPCC663.02" ; db_xref "SPD:09/09H12" ; Alias "wtf14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223 ||| term=warning, appears to be truncated; cv=warning; date=20090613" ; primary_name "wtf14" ; product "wtf element Wtf14" ;
chromosome3 GeneDB mRNA 1844960 1846194 . - . mRNA SPCC1223.04c ; systematic_id "SPCC1223.04c" ; colour "2" ; gene "SPCC1223.04c ||| mug76 ||| set11" ; Alias "set11" ; db_xref "SPD:19/19F12" ; synonym "mug76" ; GO "GO:0016279; protein-lysine N-methyltransferase activity
GO:0006479; protein amino acid methylation
GO:0005730; nucleolus
GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human SETD4 homolog; date=19700101 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YDR198C; date=19700101 ||| term=target is SPCC31H12.04c; db_xref=PMID:18195021; date=20080121 ||| term=target is SPCC16C4.13c; db_xref=PMID:18195021; date=20080121 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Rpl12; db_xref=PMID:18195021; date=20100629" ; primary_name "set11" ; product "ribosomal protein lysine methyltransferase Set11" ;
chromosome3 GeneDB mRNA 275305 277232 . - . mRNA SPCC794.12c ; systematic_id "SPCC794.12c" ; colour "2" ; gene "mae2 ||| SPCC794.12c" ; Alias "mae2" ; db_xref "SPD:35/35D05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005739; mitochondrion
GO:0016619; malate dehydrogenase (oxaloacetate- decarboxylating) activity
GO:0006108; malate metabolic process
GO:0006090; pyruvate metabolism
GO:0006099; tricarboxylic acid cycle" ; primary_name "mae2" ; product "malic enzyme, malate dehydrogenase (oxaloacetate decarboxylating), Mae2" ; EC_number "1.1.1.38" ;
chromosome3 GeneDB mRNA 1826951 1827360 . - . mRNA SPCC285.15c ; systematic_id "SPCC285.15c" ; colour "2" ; gene "rps2802 ||| rps28-2 ||| rps28 ||| SPCC285.15c" ; Alias "rps2802" ; db_xref "SPD:01/01B10" ; synonym "rps28-2 ||| rps28" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000028; ribosomal small subunit assembly
GO:0030490; maturation of SSU-rRNA
GO:2000208; positive regulation of ribosomal small subunit export from nucleus
GO:0005730; nucleolus
GO:0000469; cleavage involved in rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR167C and YLR264W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps2802" ; product "40S ribosomal protein S28, Rps2802" ;
chromosome3 GeneDB mRNA 2008159 2009196 . - . mRNA SPCC4F11.04c ; systematic_id "SPCC4F11.04c" ; colour "2" ; gene "SPCC4F11.04c" ; Alias "imt2" ; db_xref "SPD:15/15G04" ; GO "GO:0000030; mannosyltransferase activity
GO:0006688; glycosphingolipid biosynthesis
GO:0031501; mannosyltransferase complex
GO:0051999; mannose inositol phosphoceramide biosynthetic process
GO:0006675; mannose inositol phosphoceramide metabolic process
GO:0033106; cis-Golgi network membrane
GO:0032588; trans-Golgi network membrane
GO:0006897; endocytosis
GO:0007038; endocytosed protein transport to vacuole" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, pear shaped; db_xref=PMID:20388730; date=20100622 ||| term=phenotype, viable; qualifier=deletion; cv=phenotype; db_xref=PMID:20388730; date=20100622 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR161W and YPL057C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Ipc Mannosyl- Transferase homologue; db_xref=PMID:20388730; date=20100622 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Fungi only; date=20100827" ; primary_name "imt2" ; product "mannosyltransferase Imt2" ;
chromosome3 GeneDB mRNA 907642 908631 . + . mRNA SPCC24B10.04 ; db_xref "SPD:06/06F09" ; systematic_id "SPCC24B10.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC24B10.04" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2239885 2242143 . + . mRNA SPCC1919.15 ; systematic_id "SPCC1919.15" ; colour "2" ; gene "brl1 ||| SPCC1919.15 ||| SPCC790.01 ||| rfp2" ; Alias "brl1" ; db_xref "SPD:37/37C09" ; synonym "SPCC790.01 ||| rfp2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=conditional; allele=htbK119R; db_xref=PMID:17363370; date=20100723 ||| term=zf-C3HC4 type (RING finger); date=20070212 ||| term=zinc finger protein; date=19700101 ||| term=ubiquitin-protein ligase E3; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YDL074C; date=19700101 ||| term=misc, the chromatin assembly function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17374714; date=20070716 ||| term=misc, chromatin silencing function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17363370; date=20070716 ||| term=name description, RING finger protein; cv=name_description; db_xref=PMID:17363370; date=20070716 ||| term=name description, BRE1-like; cv=name_description; db_xref=PMID:17374714; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0033503; HULC complex
GO:0033503; HULC complex
GO:0005721; centric heterochromatin
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006336; DNA replication-independent nucleosome assembly
GO:0031497; chromatin assembly
GO:0006342; chromatin silencing
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0051569; regulation of histone H3-K4 methylation
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "brl1" ; product "ubiquitin-protein ligase E3 Brl1" ;
chromosome3 GeneDB mRNA 45695 46912 . - . mRNA SPCC757.02c ; db_xref "SPD:19/19D05" ; systematic_id "SPCC757.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; colour "10" ; gene "SPCC757.02c" ; product "epimarase (predicted)" ;
chromosome3 GeneDB mRNA 237554 239381 . + . mRNA SPCC1529.01 ; systematic_id "SPCC1529.01" ; colour "7" ; gene "SPCC1529.01 ||| SPCC794.14" ; note "coordinates updated 12/Oct?07, pers. comm. Brian Wilhelm" ; db_xref "SPD:25/25B08" ; synonym "SPCC794.14" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPBC1348.05 and SPAPB1A11.01 and SPBPB2B2.16c and SPAC750.02c; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101" ; GO "GO:0006810; transport
GO:0022857; carrier activity
GO:0005886; plasma membrane" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 671310 671555 . + . mRNA SPCC16C4.21 ; systematic_id "SPCC16C4.21" ; colour "6" ; gene "SPCC16C4.21" ; product "dubious" ; note "previously predicted protein TR:Q09185, on the 54/1 promoter fragment, but this is 5' of the promoter there is no evidence that it is coding, as it has short length, very low coding potential and no homology" ;
chromosome3 GeneDB mRNA 62840 64027 . + . mRNA SPCC757.08 ; db_xref "SPD:15/15E10" ; systematic_id "SPCC757.08" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0000175; 3'-5'-exoribonuclease activity
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR280W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC757.08" ; product "exosome subunit Rrp45 (predicted)" ;
chromosome3 GeneDB mRNA 2408742 2409461 . + . mRNA SPCP1E11.10 ; db_xref "SPD:08/08E08" ; systematic_id "SPCP1E11.10" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ankyrin repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCR051W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCP1E11.10" ; product "ankyrin repeat protein, unknown biological role" ;
chromosome3 GeneDB mRNA 1616463 1617232 . + . mRNA SPCC777.11 ; db_xref "SPD:34/34D10" ; systematic_id "SPCC777.11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC777.11" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2354785 2356058 . - . mRNA SPCC70.12c ; systematic_id "SPCC70.12c" ; colour "2" ; gene "SPCC70.12c ||| ecl1" ; Alias "ecl1" ; obsolete_name "SPNCRNA.518" ; synonym "SPNG2611" ; GO "GO:0005634; nucleus
GO:0001300; chronological cell aging" ; controlled_curation "term=orthologous to S. cerevisiae YGR146C; date=20080428 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, conserved in Fungi; date=20090410 ||| term=species distribution, conserved in Fungi only; date=20090410 ||| term=warning, previously annotated as ncRNA; cv=warning; date=20100227" ; primary_name "ecl1" ; product "extender of the chronological lifespan protein Ecl1" ;
chromosome3 GeneDB mRNA 628570 630719 . - . mRNA SPCC31H12.05c ; systematic_id "SPCC31H12.05c" ; colour "2" ; gene "sds21 ||| SPCC31H12.05c" ; Alias "sds21" ; db_xref "SPD:23/23C11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER133W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0006364; rRNA processing" ; primary_name "sds21" ; product "serine/threonine protein phosphatase Sds21" ; EC_number "3.1.3.16" ;
chromosome3 GeneDB mRNA 1341269 1341622 . - . mRNA SPCC338.18 ; db_xref "SPD:02/02D02" ; systematic_id "SPCC338.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC338.18" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1283162 1286035 . + . mRNA SPCC1322.01 ; systematic_id "SPCC1322.01" ; colour "2" ; gene "SPCC23B6.06 ||| SPCC1322.01 ||| rpm1 ||| par1" ; Alias "rpm1" ; db_xref "SPD:47/47D03" ; synonym "SPCC23B6.06 ||| par1" ; GO "GO:0005759; mitochondrial matrix
GO:0003723; RNA binding
GO:0008859; exoribonuclease II activity
GO:0006401; RNA catabolic process
GO:0000965; mitochondrial RNA 3'-end processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR287C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, RNA Processosome Mitochondrial; cv=name_description; db_xref=PMID:18304578; date=20091002" ; primary_name "rpm1" ; product "3'-5' exonuclease for RNA 3' ss-tail" ;
chromosome3 GeneDB mRNA 105680 107419 . + . mRNA SPCC330.02 ; systematic_id "SPCC330.02" ; colour "2" ; gene "rhp7 ||| SPCC330.02 ||| SPCC613.14" ; Alias "rhp7" ; db_xref "SPD:35/35H08" ; synonym "SPCC613.14" ; GO "GO:0000109; nucleotide-excision repair complex
GO:0005515; protein binding
GO:0006289; nucleotide-excision repair
GO:0034644; cellular response to UV" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=leucine-rich repeat protein; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YJR052W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=genome organization, divergently orientated to functionally related gene; cv=genome_org; db_xref=PMID:10446227; date=20061027" ; primary_name "rhp7" ; product "Rad7 homolog Rhp7" ;
chromosome3 GeneDB mRNA 1437153 1437930 . + . mRNA SPCC622.18 ; systematic_id "SPCC622.18" ; colour "7" ; gene "rpl6 ||| SPCC622.18" ; Alias "rpl6" ; db_xref "SPD:06/06D11" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML073C and YLR448W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl6" ; product "60S ribosomal protein L6 (predicted)" ;
chromosome3 GeneDB mRNA 1419342 1420939 . - . mRNA SPCC622.12c ; systematic_id "SPCC622.12c" ; colour "7" ; db_xref "KEGG:MAP00251; ||| KEGG:MAP00910; ||| SPD:21/21A10" ; Alias "gdh1" ; GO "GO:0006537; glutamate biosynthesis
GO:0004354; glutamate dehydrogenase (NADP+) activity
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0019676; ammonia assimilation cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR375C and YAL062W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "gdh1" ; product "NADP-specific glutamate dehydrogenase Gdh1 (predicted)" ; EC_number "1.4.1.4" ;
chromosome3 GeneDB mRNA 937803 938567 . + . mRNA SPCC24B10.20 ; db_xref "SPD:09/09E03" ; systematic_id "SPCC24B10.20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL071W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827" ; colour "10" ; gene "SPCC24B10.20" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB mRNA 752474 754798 . + . mRNA SPCC1020.13c ; systematic_id "SPCC1020.13c" ; colour "7" ; gene "SPCC14G10.05 ||| SPCC1020.13c" ; Alias "SPCC14G10.05" ; db_xref "SPD:37/37F09" ; synonym "SPCC14G10.05" ; GO "GO:0004620; phospholipase activity
GO:0044242; cellular lipid catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR022C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "SPCC14G10.05" ; product "DDHD family phospholipase (predicted)" ;
chromosome3 GeneDB mRNA 689568 690283 . + . mRNA SPCC16C4.12 ; systematic_id "SPCC16C4.12" ; colour "7" ; gene "SPCC16C4.12 ||| naa20" ; Alias "naa20" ; db_xref "SPD:06/06F08" ; synonym "nat3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR131C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; GO "GO:0031416; NatB complex
GO:0005737; cytoplasm
GO:0004596; peptide alpha-N-acetyltransferase activity
GO:0017196; N-terminal peptidyl-methionine acetylation
GO:0007010; cytoskeleton organization and biogenesis
GO:0006897; endocytosis
GO:0007005; mitochondrion organization and biogenesis" ; primary_name "naa20" ; product "NatB N-acetyltransferase complex catalytic subunit Naa20 (predicted)" ;
chromosome3 GeneDB mRNA 738016 739255 . - . mRNA SPCC18B5.10c ; db_xref "SPD:19/19G10" ; systematic_id "SPCC18B5.10c" ; colour "7" ; GO "GO:0000346; transcription export complex
GO:0006406; mRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL253W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC18B5.10c" ; product "TREX complex subunit Tex1 (predicted)" ;
chromosome3 GeneDB mRNA 2274207 2275471 . - . mRNA SPCC1840.09 ; db_xref "SPD:10/10G04" ; systematic_id "SPCC1840.09" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR290C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1840.09" ; product "NAD dependent epimerase/dehydratase family protein" ;
chromosome3 GeneDB mRNA 114921 115256 . + . mRNA SPCC330.20 ; Alias "tam14" ; systematic_id "SPCC330.20" ; controlled_curation "term=conserved in Fungi; date=20100420 ||| term=conserved in Eukaryotes only; date=20100420 ||| term=no apparent S. cerevisiae ortholog; date=20100420 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=name description, Transcripts Altered in Meiosis; db_xref=PMID:21270388; date=20110131" ; colour "10" ; primary_name "tam14" ; gene "SPCC330.20" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 2014833 2016585 . - . mRNA SPCC1906.02c ; db_xref "SPD:36/36A02" ; systematic_id "SPCC1906.02c" ; colour "7" ; GO "GO:0043130; ubiquitin binding
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CUE domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL110C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1906.02c" ; product "CUE domain protein Cue3 (predicted)" ;
chromosome3 GeneDB mRNA 508053 510265 . + . mRNA SPCC970.04c ; systematic_id "SPCC970.04c" ; colour "2" ; gene "mob2 ||| SPCC970.04c" ; Alias "mob2" ; db_xref "SPD:44/44B01" ; GO "GO:0005938; cell cortex
GO:0032153; cell division site
GO:0005737; cytoplasm
GO:0005515; protein binding
GO:0030295; protein kinase activator activity
; regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO:0007346; regulation of mitotic cell cycle
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL034C-B; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12456722; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; primary_name "mob2" ; product "protein kinase activator Mob2" ;
chromosome3 GeneDB mRNA 1739338 1740648 . - . mRNA SPCC1450.08c ; systematic_id "SPCC1450.08c" ; colour "12" ; gene "wtf16 ||| SPCC1450.08c" ; db_xref "SPD:51/51F04" ; Alias "wtf16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf16" ; product "wtf element Wtf16" ;
chromosome3 GeneDB mRNA 640145 642542 . - . mRNA SPCC5E4.03c ; systematic_id "SPCC5E4.03c" ; colour "2" ; gene "taf72 ||| SPCC5E4.03c ||| taf5" ; Alias "taf5" ; db_xref "SPD:38/38B09" ; synonym "taf72" ; GO "GO:0000124; SAGA complex
GO:0005669; transcription factor TFIID complex
GO:0005515; protein binding
GO:0016986; transcription initiation factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11279037; date=19700101 ||| term=orthologous to S. cerevisiae YBR198C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "taf5" ; product "SAGA complex subunit/TATA-binding protein associated factor/transcription factor TFIID complex subunit Taf5" ;
chromosome3 GeneDB mRNA 1796281 1797246 . - . mRNA SPCC1442.17c ; systematic_id "SPCC1442.17c" ; colour "7" ; gene "ist1 ||| SPCC285.02c ||| SPCC1442.17c" ; Alias "ist1" ; db_xref "SPD:13/13F03" ; synonym "SPCC285.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL265C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "; endosome
GO:0032511; late endosome to vacuole transport via multivesicular body sorting pathway" ; primary_name "ist1" ; product "MVB sorting pathway protein (predicted)" ;
chromosome3 GeneDB mRNA 1142692 1144342 . - . mRNA SPCC4B3.18 ; db_xref "SPD:13/13D05" ; systematic_id "SPCC4B3.18" ; colour "7" ; GO "GO:0015937; coenzyme A biosynthesis
GO:0004632; phosphopantothenate--cysteine ligase activity
GO:0005634; nucleus
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL083C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC4B3.18" ; product "phosphopantothenate-cysteine ligase (predicted)" ;
chromosome3 GeneDB mRNA 881131 881660 . + . mRNA SPCC16A11.07 ; systematic_id "SPCC16A11.07" ; colour "2" ; gene "coq10 ||| SPCC16A11.07" ; Alias "coq10" ; db_xref "SPD:04/04G07" ; GO "GO:0048039; ubiquinone binding
GO:0045333; cellular respiration
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to H202; db_xref=PMID:19120452; date=20100624 ||| term=orthologous to S. cerevisiae YOL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complemented by human COQ10; db_xref=PMID:19120452; date=20100624 ||| term=human COQ10 ortholog; date=20100701" ; primary_name "coq10" ; product "mitochondrial ubiquinone binding protein Coq10" ;
chromosome3 GeneDB mRNA 1651272 1653177 . + . mRNA SPCC663.10 ; db_xref "SPD:40/40E12" ; systematic_id "SPCC663.10" ; colour "7" ; GO "GO:0008168; methyltransferase activity
GO:0016300; tRNA (uracil) methyltransferase activity
GO:0030488; tRNA methylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL030W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC663.10" ; product "tRNA (uracil) methyltransferase (predicted)" ;
chromosome3 GeneDB mRNA 981011 984422 . + . mRNA SPCC1795.08c ; systematic_id "SPCC1795.08c" ; colour "2" ; gene "SPCC1795.08c ||| vid21" ; Alias "vid21" ; db_xref "SPD:47/47H07" ; GO "GO:0003677; DNA binding
GO:0035267; NuA4 histone acetyltransferase complex
GO:0006281; DNA repair
GO:0016573; histone acetylation
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=Myb family; date=19700101 ||| term=SANT subfamily; date=19700101 ||| term=orthologous to S. cerevisiae YDR359C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "vid21" ; product "NuA4 histone acetyltransferase complex subunit Vid21" ;
chromosome3 GeneDB mRNA 300340 302227 . - . mRNA SPCC553.04 ; systematic_id "SPCC553.04" ; colour "7" ; gene "cyp9 ||| SPCC553.04" ; Alias "cyp9" ; db_xref "SPD:26/26D12" ; GO "GO:0006342; chromatin silencing
GO:0000790; nuclear chromatin
GO:0042393; histone binding
GO:0031060; regulation of histone methylation
GO:0003755; peptidyl-prolyl cis-trans isomerase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=WD repeat protein; date=20070822 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cyp9" ; product "WD repeat containing cyclophilin family peptidyl- prolyl cis-trans isomerase Cyp9 (predicted)" ;
chromosome3 GeneDB mRNA 1540675 1542075 . - . mRNA SPCC1753.01c ; systematic_id "SPCC1753.01c" ; colour "2" ; gene "ssb2 ||| SPCC584.06c ||| SPCC1753.01c ||| rpa2" ; Alias "ssb2" ; db_xref "SPD:13/13G07" ; synonym "SPCC584.06c ||| rpa2" ; GO "GO:0003697; single-stranded DNA binding
GO:0005662; DNA replication factor A complex
GO:0006310; DNA recombination
GO:0006269; DNA replication, synthesis of RNA primer
GO:0006281; DNA repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL312W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=OB fold; date=20091106" ; primary_name "ssb2" ; product "single-stranded DNA binding protein Ssb2" ;
chromosome3 GeneDB mRNA 1552715 1554475 . - . mRNA SPCC162.12 ; systematic_id "SPCC162.12" ; colour "2" ; gene "SPCC1753.06c ||| SPCC162.12 ||| tco89" ; Alias "tco89" ; db_xref "SPD:21/21G09" ; synonym "SPCC1753.06c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL180W; db_xref=PMID:18076573; date=19700101 ||| term=; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0031931; TORC 1 complex
GO:0031929; TOR signaling pathway" ; primary_name "tco89" ; product "TORC1 subunit Tco89" ;
chromosome3 GeneDB mRNA 643421 649471 . + . mRNA SPCC5E4.04 ; systematic_id "SPCC5E4.04" ; colour "2" ; gene "cut1 ||| SPCC5E4.04" ; Alias "cut1" ; db_xref "SPD:31/31B09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005819; spindle
GO:0004197; cysteine-type endopeptidase activity
GO:0005515; protein binding
GO:0006302; double-strand break repair
GO:0045143; homologous chromosome segregation
GO:0000070; mitotic sister chromatid segregation
GO:0051306; mitotic sister chromatid separation
GO:0051306; mitotic sister chromatid separation
GO:0045842; positive regulation of mitotic metaphase/anaphase transition
GO:0006508; proteolysis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YGR098C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Rec8; db_xref=PMID:14532136; date=20100826 ||| term=target is Rad21; db_xref=PMID:14532136; date=20100826" ; primary_name "cut1" ; product "separase/separin" ;
chromosome3 GeneDB mRNA 2265570 2267937 . - . mRNA SPCC1840.05c ; db_xref "SPD:28/28B04" ; systematic_id "SPCC1840.05c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006006; cellular glucose metabolic process
GO:0004614; phosphoglucomutase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR278W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; gene "SPCC1840.05c" ; product "phosphoglucomutase (predicted)" ;
chromosome3 GeneDB mRNA 1431222 1435016 . - . mRNA SPCC622.16c ; systematic_id "SPCC622.16c" ; colour "2" ; gene "epe1 ||| SPCC622.16c" ; Alias "epe1" ; db_xref "SPD:29/29E12" ; synonym "kdm2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=jmjC domain; date=19700101 ||| term=orthologous to S. cerevisiae YER051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005720; nuclear heterochromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0006338; chromatin remodeling
GO:0000070; mitotic sister chromatid segregation
GO:0001672; regulation of chromatin assembly or disassembly
GO:0090052; regulation of chromatin silencing at centromere
GO:0090054; regulation of chromatin silencing at silent mating-type cassette
GO:0031454; regulation of extent of heterochromatin formation
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "epe1" ; product "Jmjc domain chromatin associated protein Epe1" ;
chromosome3 GeneDB mRNA 68287 69387 . + . mRNA SPCC757.10 ; systematic_id "SPCC757.10" ; colour "7" ; gene "vph2 ||| SPCC757.10" ; Alias "vph2" ; db_xref "SPD:07/07A11" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0070070; proton-transporting V-type ATPase complex assembly
GO:0007035; vacuolar acidification" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL119C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "vph2" ; product "endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted)" ;
chromosome3 GeneDB mRNA 1809346 1810336 . + . mRNA SPCC285.08 ; systematic_id "SPCC285.08" ; colour "7" ; gene "ret2 ||| SPCC285.08" ; db_xref "SPD:12/12C03" ; Alias "ret2" ; GO "GO:0030126; COPI vesicle coat
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR051C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=warning, appears to be truncated; date=20100127" ; primary_name "ret2" ; product "coatomer delta subunit Ret2 (predicted)" ;
chromosome3 GeneDB mRNA 784250 785705 . - . mRNA SPCC1020.03 ; db_xref "SPD:23/23E03" ; systematic_id "SPCC1020.03" ; colour "7" ; GO "GO:0005381; iron ion transporter activity
GO:0048250; mitochondrial iron ion transport
GO:0005739; mitochondrion
GO:0006880; intracellular sequestering of iron ion
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR177W and YPL224C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; gene "SPCC1020.03" ; product "mitochondrial iron ion transporter (predicted)" ;
chromosome3 GeneDB mRNA 1819027 1821448 . - . mRNA SPCC285.13c ; db_xref "SPD:38/38A06" ; systematic_id "SPCC285.13c" ; colour "7" ; GO "GO:0017056; structural constituent of nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0000059; protein import into nucleus, docking
GO:0005643; nuclear pore" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAR002W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC285.13c" ; product "nucleoporin Nup60 (predicted)" ;
chromosome3 GeneDB mRNA 815442 816457 . - . mRNA SPCC1393.09c ; db_xref "SPD:15/15B01" ; systematic_id "SPCC1393.09c" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR152W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RWDD1 ortholog; date=20100728" ; gene "SPCC1393.09c" ; product "RWD domain protein, implicated in translation" ;
chromosome3 GeneDB mRNA 662010 664321 . - . mRNA SPCC16C4.02c ; db_xref "SPD:34/34F05" ; systematic_id "SPCC16C4.02c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Metazoa; date=20100806 ||| term=species distribution, conserved in Vertebrates; date=20100806 ||| term=species distribution, conserved in Eukaryotes only; date=20100806 ||| term=human NCDN ortholog; date=20100806" ; colour "10" ; gene "SPCC16C4.02c" ; product "DUF1941 family protein" ;
chromosome3 GeneDB mRNA 194400 196493 . + . mRNA SPCC1235.09 ; systematic_id "SPCC1235.09" ; colour "2" ; gene "hif2 ||| SPCC1235.09" ; Alias "hif2" ; db_xref "SPD:46/46A09" ; GO "GO:0006342; chromatin silencing
GO:0016575; histone deacetylation
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0034967; Set3 complex
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR103W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hif2" ; product "Set3 complex subunit Hif2" ;
chromosome3 GeneDB mRNA 176747 178673 . + . mRNA SPCC1235.02 ; systematic_id "SPCC1235.02" ; colour "2" ; gene "bio2 ||| SPCC320.01c ||| SPCC1235.02" ; note "vitamin metabolic process hardwired for analysis, temporary" ; Alias "bio2" ; db_xref "SPD:17/17B04" ; synonym "SPCC320.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR286C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004076; biotin synthase activity
GO:0009102; biotin biosynthesis
GO:0005739; mitochondrion
GO:0006766; vitamin metabolic process" ; primary_name "bio2" ; product "biotin synthase" ; EC_number "2.8.1.6" ;
chromosome3 GeneDB mRNA 1805166 1806450 . - . mRNA SPCC285.06c ; systematic_id "SPCC285.06c" ; colour "12" ; gene "wtf17 ||| SPCC285.06c" ; Alias "wtf17" ; obsolete_name "wtf4-pseudo" ; synonym "SPCC285.06c" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf17" ; product "wtf element Wtf17" ;
chromosome3 GeneDB mRNA 2281612 2284101 . + . mRNA SPCC1840.12 ; systematic_id "SPCC1840.12" ; colour "7" ; gene "SPCC965.02 ||| SPCC1840.12" ; Alias "SPCC965.02" ; db_xref "SPD:29/29A02" ; synonym "SPCC965.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL212C and YPR194C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005887; integral to plasma membrane
GO:0015198; oligopeptide transporter activity
GO:0022857; transmembrane transporter activity
GO:0006857; oligopeptide transport" ; primary_name "SPCC965.02" ; product "OPT oligopeptide transporter family protein (predicted)" ;
chromosome3 GeneDB mRNA 260437 262325 . + . mRNA SPCC794.06 ; db_xref "SPD:22/22E05" ; systematic_id "SPCC794.06" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPCC794.06" ; product "TDT malic acid transporter (predicted)" ;
chromosome3 GeneDB mRNA 2268705 2269751 . - . mRNA SPCC1840.06 ; systematic_id "SPCC1840.06" ; colour "7" ; gene "atp5 ||| SPCC1840.06" ; Alias "atp5" ; db_xref "SPD:11/11A02" ; GO "GO:0000274; proton-transporting ATP synthase, stator stalk (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0005198; structural molecule activity
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR298C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp5" ; product "F0-ATPase delta subunit (predicted)" ;
chromosome3 GeneDB mRNA 1254340 1255057 . + . mRNA SPCC645.09 ; systematic_id "SPCC645.09" ; colour "7" ; gene "SPCC645.09 ||| mrpl37" ; Alias "mrpl37" ; db_xref "SPD:03/03D04" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR268W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl37" ; product "mitochondrial ribosomal protein subunit L37 (predicted)" ;
chromosome3 GeneDB mRNA 2152161 2153811 . + . mRNA SPCC1620.05 ; db_xref "SPD:44/44F11" ; systematic_id "SPCC1620.05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human FH ortholog; date=20100217" ; GO "GO:0005968; Rab-protein gerenylgerenyltransferase complex
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0004663; Rab gerenylgerenyltransferase activity
GO:0018344; protein amino acid gerenylgerenylation" ; colour "7" ; product "Rab geranylgeranyltransferase alpha subunit (predicted)" ;
chromosome3 GeneDB mRNA 974081 976722 . - . mRNA SPCC1795.11 ; systematic_id "SPCC1795.11" ; colour "2" ; gene "sum3 ||| ded1 ||| slh3 ||| moc2 ||| SPCC1795.11" ; Alias "sum3" ; db_xref "SPD:26/26F10" ; synonym "ded1 ||| slh3 ||| moc2" ; GO "GO:0005737; cytoplasm
GO:0004004; ATP-dependent RNA helicase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0031137; regulation of conjugation with cellular fusion
GO:0006417; regulation of translation
GO:0071470; cellular response to osmotic stress" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9832516; date=19700101 ||| term=orthologous to S. cerevisiae YOR204W and YPL119C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Suppressor of Uncontrolled Mitosis; cv=name_description; date=20091004 ||| term=name description, Multicopy suppressor of Overexpressed Cyr1; cv=name_description; date=20091004 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sum3" ; product "ATP-dependent RNA helicase Sum3" ;
chromosome3 GeneDB mRNA 1444653 1445796 . + . mRNA SPCC61.03 ; db_xref "SPD:14/14C06" ; systematic_id "SPCC61.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL151C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CARKD ortholog; date=20100728" ; colour "10" ; gene "SPCC61.03" ; product "carbohydrate kinase domain family protein" ;
chromosome3 GeneDB mRNA 798248 798850 . + . mRNA SPCC1393.03 ; systematic_id "SPCC1393.03" ; colour "7" ; gene "rps1501 ||| rps15-1 ||| SPCC1393.03" ; Alias "rps1501" ; db_xref "SPD:04/04B10" ; synonym "rps15-1" ; GO "GO:0003735; structural constituent of ribosome
GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000056; ribosomal small subunit export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rps1501" ; product "40S ribosomal protein S15 (predicted)" ;
chromosome3 GeneDB mRNA 514122 514770 . - . mRNA SPCC970.12 ; systematic_id "SPCC970.12" ; colour "2" ; gene "mis18 ||| SPCC970.12" ; Alias "mis18" ; db_xref "SPD:07/07E03" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; condensed chromosome kinetochore
GO:0005634; nucleus
GO:0005515; protein binding
GO:0031055; chromatin remodeling at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0016575; histone deacetylation
GO:0051382; kinetochore assembly
GO:0034501; protein localization to kinetochore
GO:0031066; regulation of histone deacetylation at centromere
GO:0034080; DNA replication-independent nucleosome assembly at centromere" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15369671; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human hMis18 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221" ; primary_name "mis18" ; product "kinetochore protein Mis18" ;
chromosome3 GeneDB mRNA 445256 446357 . + . mRNA SPCC4G3.13c ; systematic_id "SPCC4G3.13c" ; colour "7" ; gene "SPCC4G3.13c" ; note "putative signal sequence at aa 1-20" ; db_xref "SPD:07/07E01" ; GO "GO:0030433; ER-associated protein catabolism
GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CUE domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YMR264W and YML101C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "CUE domain protein Cue1/4 family involved in ER associated protein catabolism (predicted)" ;
chromosome3 GeneDB mRNA 1497980 1500664 . - . mRNA SPCC188.10c ; db_xref "SPD:40/40H12" ; systematic_id "SPCC188.10c" ; pseudo "_no_value" ; synonym "SPCC584.07c" ; colour "13" ; controlled_curation "term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100104" ; product "pseudogene" ; note "similar to S. pombe SPCC188.09c but has 2 stop codons so is probably a pseudogene; 36 aa repeat containing" ;
chromosome3 GeneDB mRNA 839962 844071 . + . mRNA SPCC63.04 ; systematic_id "SPCC63.04" ; colour "2" ; gene "mok14 ||| SPCC63.04" ; Alias "mok14" ; db_xref "SPD:48/48F12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20070309 ||| term=similar to S. pombe Mok1 and Mok11 and Mok13 and Mok12; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; db_xref=PMID:16420355; date=20080430 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0030476; ascospore wall assembly
GO:0005619; fungal-type spore wall
GO:0005628; prospore membrane
GO:0030979; alpha-glucan biosynthetic process
GO:0033201; alpha-1,4-glucan synthase activity
GO:0070630; 1,4-alpha-glucan biosynthetic process" ; primary_name "mok14" ; product "alpha-1,4-glucan synthase Mok14" ; EC_number "2.4.1.183" ;
chromosome3 GeneDB mRNA 212160 214376 . + . mRNA SPCC1235.14 ; systematic_id "SPCC1235.14" ; colour "2" ; gene "ght5 ||| SPCC1235.14" ; Alias "ght5" ; db_xref "SPD:34/34E03" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "ght5" ; product "hexose transporter Ght5" ;
chromosome3 GeneDB mRNA 1923140 1925397 . + . mRNA SPCC74.01 ; systematic_id "SPCC74.01" ; colour "7" ; gene "sly1 ||| SPCC74.01" ; Alias "sly1" ; db_xref "SPD:46/46F05" ; GO "GO:0000149; SNARE binding
GO:0006904; vesicle docking during exocytosis
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sly1" ; product "SNARE binding protein Sly1 (predicted)" ;
chromosome3 GeneDB mRNA 1584480 1587560 . + . mRNA SPCC162.02c ; db_xref "SPD:29/29G05" ; systematic_id "SPCC162.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081113" ; colour "10" ; gene "SPCC162.02c" ; product "AMP-binding dehydrogenase (predicted)" ;
chromosome3 GeneDB mRNA 1401530 1402672 . + . mRNA SPCC622.21 ; systematic_id "SPCC622.21" ; colour "12" ; gene "wtf12 ||| SPCC622.21" ; note "was originally annotated as pseudo as original prediction had frameshift and stop codon" ; Alias "wtf12" ; obsolete_name "SPCC1281.09" ; db_xref "SPD:52/52B01" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; date=20070223 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100317" ; primary_name "wtf12" ; product "wtf element Wtf12" ;
chromosome3 GeneDB mRNA 1144291 1144918 . + . mRNA SPCC4B3.20 ; Alias "cmc2" ; synonym "new24" ; systematic_id "SPCC4B3.20" ; colour "7" ; GO "GO:0005507; copper ion binding
GO:0031314; extrinsic to mitochondrial inner membrane
GO:0033617; mitochondrial respiratory chain complex IV assembly" ; controlled_curation "term=orthologous to S. cerevisiae YKL137W; date=20090722 ||| term=conserved in Fungi; date=20090722 ||| term=conserved in Metazoa; date=20090722 ||| term=conserved in Vertebrates; date=20090722 ||| term=conserved in Eukaryotes; date=20090722 ||| term=conserved in Eukaryotes only; date=20090722 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; primary_name "cmc2" ; product "copper binding protein of the mitchondrial inner membrane Cmc2" ;
chromosome3 GeneDB mRNA 1293804 1296086 . - . mRNA SPCC1322.05c ; db_xref "SPD:36/36G11" ; systematic_id "SPCC1322.05c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL045W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004463; leukotriene-A4 hydrolase activity
GO:0006691; leukotriene metabolism
GO:0004177; aminopeptidase activity
GO:0006629; lipid metabolism
GO:0030163; protein catabolism
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004301; epoxide hydrolase activity" ; gene "SPCC1322.05c" ; product "leukotriene A-4 hydrolase (predicted)" ; EC_number "3.3.2.6 ||| 3.3.2.10" ;
chromosome3 GeneDB mRNA 869690 872165 . + . mRNA SPCC16A11.02 ; systematic_id "SPCC16A11.02" ; colour "7" ; gene "SPCC63.16 ||| SPCC16A11.02 ||| utp13" ; Alias "utp13" ; db_xref "SPD:28/28E02" ; synonym "SPCC63.16" ; GO "GO:0030490; processing of 20S pre-rRNA
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0030515; snoRNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR222C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "utp13" ; product "U3 snoRNP-associated protein Utp13 (predicted)" ;
chromosome3 GeneDB mRNA 2371994 2373316 . - . mRNA SPCC1827.08c ; systematic_id "SPCC1827.08c" ; colour "2" ; gene "pof7 ||| SPCC70.11c ||| SPCC1827.08c" ; Alias "pof7" ; db_xref "SPD:16/16H11" ; synonym "SPCC70.11c" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pof7" ; product "F-box protein Pof7" ;
chromosome3 GeneDB mRNA 918421 919906 . - . mRNA SPCC24B10.10c ; db_xref "SPD:16/16D08" ; systematic_id "SPCC24B10.10c" ; colour "7" ; GO "GO:0016887; ATPase activity
GO:0006626; protein targeting to mitochondrion
GO:0005741; mitochondrial outer membrane
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YGR028W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC24B10.10c" ; product "mitochondrial outer membrane ATPase Msp1 (predicted)" ;
chromosome3 GeneDB mRNA 596340 597111 . - . mRNA SPCC1183.03c ; db_xref "SPD:08/08D10" ; systematic_id "SPCC1183.03c" ; colour "7" ; GO "GO:0018283; iron incorporation into metallo-sulfur cluster
GO:0006879; iron ion homeostasis
GO:0005759; mitochondrial matrix
GO:0006800; oxygen and reactive oxygen species metabolism
GO:0030234; enzyme regulator activity
GO:0005506; iron ion binding
GO:0042592; homeostatic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, Friedreich's ataxia; date=20060724 ||| term=orthologous to S. cerevisiae YDL120W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091217" ; gene "SPCC1183.03c" ; product "frataxin (predicted)" ;
chromosome3 GeneDB mRNA 313147 314135 . + . mRNA SPCC736.02 ; db_xref "SPD:11/11E06" ; systematic_id "SPCC736.02" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC736.02" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1267982 1268564 . - . mRNA SPCC23B6.02c ; db_xref "SPD:42/42B10" ; systematic_id "SPCC23B6.02c" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0030687; pre-ribosome large subunit precursor
GO:0000055; ribosomal large subunit export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=localization, undergoes nucleocytoplasmic shuttling; qualifier=predicted; date=20100608 ||| term=species distribution, conserved in Fungi; date=20100608 ||| term=orthologous to S. cerevisiae YAL059W; date=20100608" ; colour "7" ; gene "SPCC23B6.02c" ; product "pre-ribosomal factor (predicted)" ;
chromosome3 GeneDB mRNA 725979 726792 . + . mRNA SPCC18B5.04 ; systematic_id "SPCC18B5.04" ; colour "7" ; gene "SPCC18B5.04 ||| rsm18" ; Alias "rsm18" ; db_xref "SPD:42/42B11" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rsm18" ; product "mitochondrial ribosomal protein subunit S18 (predicted)" ;
chromosome3 GeneDB mRNA 418140 419518 . - . mRNA SPCC306.06c ; db_xref "SPD:14/14F02" ; systematic_id "SPCC306.06c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR101C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; colour "7" ; GO "GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0030176; integral to endoplasmic reticulum membrane
GO:0006078; 1,6-beta-glucan biosynthesis" ; gene "SPCC306.06c" ; product "ER membrane protein, BIG1 family (predicted)" ;
chromosome3 GeneDB mRNA 2093841 2094741 . + . mRNA SPCC576.07 ; systematic_id "SPCC576.07" ; colour "7" ; gene "ret3 ||| SPCC576.07" ; Alias "ret3" ; db_xref "SPD:06/06B03" ; GO "GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0030126; COPI vesicle coat
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL010W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ret3" ; product "coatomer zeta subunit (predicted)" ;
chromosome3 GeneDB mRNA 479686 481751 . + . mRNA SPCC364.04c ; db_xref "SPD:46/46C10" ; systematic_id "SPCC364.04c" ; colour "7" ; GO "GO:0000139; Golgi membrane
GO:0048193; Golgi vesicle transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL179C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC364.04c" ; product "CASP family protein involved in Golgi vesicle transport (predicted)" ;
chromosome3 GeneDB mRNA 138083 138575 . - . mRNA SPCC330.14c ; systematic_id "SPCC330.14c" ; colour "7" ; gene "rpl2402 ||| rpl24-2 ||| SPCC330.14c" ; Alias "rpl2402" ; db_xref "SPD:03/03H08" ; synonym "rpl24-2" ; GO "GO:0006412; protein biosynthesis
GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu the Eukaryota research community)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL031C and YGR148C and YLR009W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl2402" ; product "60S ribosomal protein L24 (predicted)" ;
chromosome3 GeneDB mRNA 2297563 2298690 . - . mRNA SPCC965.08c ; systematic_id "SPCC965.08c" ; colour "2" ; gene "alr1 ||| SPCC965.08c" ; Alias "alr1" ; db_xref "SPD:17/17G03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible horizontal transfer; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101" ; GO "GO:0008784; alanine racemase activity
GO:0030378; serine racemase activity
GO:0006522; alanine metabolism
GO:0034641; cellular ntirogen compound metabolic process" ; primary_name "alr1" ; product "alanine racemase Alr1" ; EC_number "5.1.1.1" ;
chromosome3 GeneDB mRNA 2004552 2006392 . + . mRNA SPCC4F11.02 ; systematic_id "SPCC4F11.02" ; colour "2" ; gene "ptc1 ||| SPCC4F11.02" ; Alias "ptc1" ; db_xref "SPD:15/15H03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Protein Phosphatase 2C homolog; date=20101124" ; GO "GO:0006470; protein amino acid dephosphorylation
GO:0034605; cellular response to heat
GO:0004722; protein phosphatase type 2C activity
GO:0000173; inactivation of MAPK activity during osmolarity sensing" ; primary_name "ptc1" ; product "protein phosphatase 2C Ptc1" ; EC_number "3.1.3.16" ;
chromosome3 GeneDB mRNA 1045467 1046568 . + . mRNA SPCC1259.07 ; systematic_id "SPCC1259.07" ; colour "2" ; gene "SPCC1259.07 ||| rxt3" ; Alias "rxt3" ; db_xref "SPD:17/17C10" ; GO "GO:0016575; histone deacetylation
GO:0005634; nucleus
GO:0006342; chromatin silencing
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL076C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=human CRISPLD2 ortholog; qualifier=predicted; date=20100919 ||| term=species distribution, conserved in Eukaryotes only; date=20100919 ||| term=species distribution, conserved in Metazoa; date=20100919 ||| term=species distribution, conserved in Vertebrates; date=20100919" ; primary_name "rxt3" ; product "transcriptional regulatory protein Rxt3" ;
chromosome3 GeneDB mRNA 2325028 2327006 . + . mRNA SPCC1494.03 ; systematic_id "SPCC1494.03" ; colour "2" ; gene "arz1 ||| SPCC1494.03" ; db_xref "SPD:23/23H04" ; Alias "arz1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=20071210 ||| term=target of Zfs1; db_xref=PMID:18042546; date=20071210 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "arz1" ; product "armadillo repeat containing, Zfs1 target number 1" ;
chromosome3 GeneDB mRNA 392127 394270 . - . mRNA SPCC1682.11c ; systematic_id "SPCC1682.11c" ; colour "7" ; gene "SPCC1682.11c" ; note "PNS1 is not present in S288C" ; db_xref "SPD:26/26C04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=orthologous to S. cerevisiae PNS1; date=20100901" ; GO "GO:0055085; transmembrane transport
GO:0022857; transmembrane transporter activity" ; product "choline transmembrane transporter family protein (predicted)" ;
chromosome3 GeneDB mRNA 1702711 1702842 . - . mRNA SPCC417.15 ; systematic_id "SPCC417.15" ; controlled_curation "term=warning, longest ORF in feature; cv=warning; date=20060721" ; colour "6" ; gene "SPCC417.15" ; product "dubious" ;
chromosome3 GeneDB mRNA 201772 202707 . - . mRNA SPCC1235.12c ; systematic_id "SPCC1235.12c" ; colour "2" ; gene "mug146 ||| SPCC1235.12c" ; Alias "mug146" ; db_xref "SPD:13/13B05" ; GO "GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug146" ; product "meiotically upregulated gene Mug46" ;
chromosome3 GeneDB mRNA 112305 113378 . - . mRNA SPCC330.04c ; systematic_id "SPCC330.04c" ; colour "10" ; gene "SPCC330.04c ||| mug135" ; note "biased repeat containing protein - 6 copies of 'WKKAREEDKAE' repeat and 6 copies of a smaller 'WRNSMDE' repeat" ; Alias "mug135" ; db_xref "SPD:16/16F01" ; GO "GO:0070263; external side of fungal-type cell wall" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20081212 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100104" ; primary_name "mug135" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 3" ;
chromosome3 GeneDB mRNA 1211990 1213642 . + . mRNA SPCC550.12 ; systematic_id "SPCC550.12" ; colour "2" ; gene "arp6 ||| SPCC550.12" ; Alias "arp6" ; db_xref "SPD:20/20H04" ; GO "GO:0000784; nuclear chromosome, telomeric region
GO:0006348; chromatin silencing at telomere
GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR085C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "arp6" ; product "actin-like protein Arp6" ;
chromosome3 GeneDB mRNA 1483031 1485176 . - . mRNA SPCC188.06c ; systematic_id "SPCC188.06c" ; colour "2" ; gene "srp54 ||| SPCC188.06c" ; Alias "srp54" ; db_xref "SPD:51/51E05" ; GO "GO:0005786; signal recognition particle (sensu Eukaryota)
GO:0003924; GTPase activity
GO:0006614; SRP-dependent cotranslational protein targeting to membrane
GO:0008312; 7S RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:7969124; date=19700101 ||| term=orthologous to S. cerevisiae YPR088C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "srp54" ; product "signal recognition particle subunit Srp54" ;
chromosome3 GeneDB mRNA 1168540 1172786 . + . mRNA SPCC4B3.04c ; systematic_id "SPCC4B3.04c" ; colour "7" ; gene "nte1 ||| SPCC4B3.04c" ; Alias "nte1" ; db_xref "SPD:30/30F02" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0005783; endoplasmic reticulum
GO:0004091; carboxylesterase activity
GO:0004622; lysophospholipase activity
GO:0044242; cellular lipid catabolic process
GO:0034638; phosphatidylcholine catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML059C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nte1" ; product "lysophospholipase (predicted)" ;
chromosome3 GeneDB mRNA 466796 467839 . - . mRNA SPCC4G3.03 ; db_xref "SPD:15/15H02" ; systematic_id "SPCC4G3.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR149C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC4G3.03" ; product "WD40/YVTN repeat-like protein" ;
chromosome3 GeneDB mRNA 47606 48486 . - . mRNA SPCC757.03c ; db_xref "SPD:08/08H07" ; systematic_id "SPCC757.03c" ; colour "10" ; GO "GO:0034599; cellular response to oxidative stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR533C and YPL280W and YOR391C and YMR322C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC757.03c" ; product "ThiJ domain protein" ;
chromosome3 GeneDB mRNA 135724 136662 . - . mRNA SPCC330.12c ; systematic_id "SPCC330.12c" ; colour "7" ; gene "sdh3 ||| SPCC330.12c" ; Alias "sdh3" ; db_xref "SPD:05/05E06" ; GO "GO:0005749; respiratory chain complex II (sensu Eukaryota)
GO:0008177; succinate dehydrogenase (ubiquinone) activity
GO:0006121; mitochondrial electron transport, succinate to ubiquinone
GO:0006105; succinate metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL141W and YMR118C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, pheochromocytoma; date=20091120 ||| term=human SDHC ortholog; date=20091120 ||| term=disease associated, paraganglioma; date=20091120 ||| term=disease associated, cancer; date=20100217" ; primary_name "sdh3" ; product "succinate dehydrogenase (ubiquinone) cytochrome b subunit (predicted)" ;
chromosome3 GeneDB mRNA 879647 881167 . - . mRNA SPCC16A11.06c ; systematic_id "SPCC16A11.06c" ; colour "7" ; gene "gpi10 ||| SPCC16A11.06c" ; Alias "gpi10" ; db_xref "SPD:24/24F09" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL142C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0004584; dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity
GO:0030176; integral to endoplasmic reticulum membrane" ; primary_name "gpi10" ; product "pig-B (predicted)" ; EC_number "2.4.1.-" ;
chromosome3 GeneDB mRNA 817990 819698 . + . mRNA SPCC1393.10 ; systematic_id "SPCC1393.10" ; colour "2" ; gene "ctr4 ||| SPCC1393.10" ; Alias "ctr4" ; db_xref "SPD:11/11G05" ; GO "GO:0046982; protein heterodimerization activity
GO:0015679; plasma membrane copper ion transport
GO:0005886; plasma membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally induced by Cuf1; db_xref=PMID:11274192; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YLR411W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, promoter contains CuSE; date=20100103" ; primary_name "ctr4" ; product "copper transporter complex subunit Ctr4" ;
chromosome3 GeneDB mRNA 354398 357640 . + . mRNA SPCC594.01 ; db_xref "SPD:29/29D11" ; systematic_id "SPCC594.01" ; synonym "SPCC736.16" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC594.01 ||| SPCC736.16" ; product "DUF1769 family protein" ;
chromosome3 GeneDB mRNA 1597415 1598596 . - . mRNA SPCC13B11.04c ; systematic_id "SPCC13B11.04c" ; colour "7" ; gene "SPCC13B11.04c ||| SPCC777.01c" ; db_xref "SPD:18/18G06" ; synonym "SPCC777.01c" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0051903; S-(hydroxymethyl)glutathione dehydrogenase activity
GO:0046294; formaldehyde catabolism
GO:0000947; amino acid catabolic process to alcohol via Ehrlich pathway
GO:0004022; alcohol dehydrogenase activity
GO:0033833; hydroxymethylfurfural reductase (NADH) activity
GO:0033859; furaldehyde metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL168W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "glutathione-dependent formaldehyde dehydrogenase (predicted)" ; EC_number "1.1.1.284" ;
chromosome3 GeneDB mRNA 1256651 1257493 . - . mRNA SPCC645.11c ; systematic_id "SPCC645.11c" ; colour "2" ; gene "mug117 ||| SPCC645.11c" ; note "possibly spliced to SPCC645.12c" ; Alias "mug117" ; db_xref "SPD:05/05H02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; GO "GO:0045132; meiotic chromosome segregation
GO:0030437; sporulation (sensu Fungi)" ; primary_name "mug117" ; product "meiotically upregulated gene Mug117" ;
chromosome3 GeneDB mRNA 1160411 1161080 . + . mRNA SPCC4B3.09c ; db_xref "SPD:07/07F11" ; systematic_id "SPCC4B3.09c" ; colour "7" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL068W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC4B3.09c" ; product "mitochondrial ribosomal protein subunit L12 (predicted)" ;
chromosome3 GeneDB mRNA 2059929 2063005 . + . mRNA SPCC1739.14 ; systematic_id "SPCC1739.14" ; colour "2" ; gene "npp106 ||| SPCC1739.14" ; Alias "npp106" ; db_xref "SPD:29/29G07" ; GO "GO:0005643; nuclear pore
GO:0006406; mRNA export from nucleus
GO:0031965; nuclear membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:9372936; date=19700101 ||| term=orthologous to S. cerevisiae YFR002W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "npp106" ; product "nucleoporin Npp106" ;
chromosome3 GeneDB mRNA 1301970 1305436 . + . mRNA SPCC1322.08 ; systematic_id "SPCC1322.08" ; colour "2" ; db_xref "SPD:27/27B03" ; Alias "srk1" ; synonym "mkp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12080074; date=19700101 ||| term=orthologous to S. cerevisiae YGL158W and YLR248W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=name description, Sty1 Regulated Kinase; db_xref=PMID:12080074; date=20100122 ||| term=target is Cdc25; qualifier=phosphorylates; db_xref=PMID:156629716; date=20100224 ||| term=target of Sty1; qualifier=phosphorylated_by|during_anaphase; db_xref=PMID:12589433; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:15629716; date=20101215 ||| term=phenotype, cell morphology, small cells; db_xref=PMID:15629716; qualifier=deletion|at_high_temperature; date=20101215" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004683; calcium- and calmodulin-dependent protein kinase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0040020; regulation of meiosis
GO:0007088; regulation of mitosis
GO:0033554; cellular response to stress
GO:0031098; stress-activated protein kinase signaling pathway
GO:0010972; negative regulation of G2/M transition" ; primary_name "srk1" ; product "MAPK-activated protein kinase Srk1" ;
chromosome3 GeneDB mRNA 995257 997125 . + . mRNA SPCC1795.02c ; systematic_id "SPCC1795.02c" ; colour "7" ; gene "SPCC1795.02c ||| SPCC895.01 ||| vcx1" ; Alias "vcx1" ; db_xref "SPD:22/22E03" ; synonym "SPCC895.01" ; GO "GO:0000324; vacuole (sensu Fungi)
GO:0006816; calcium ion transport
GO:0015085; calcium ion transporter activity
GO:0006874; cellular calcium ion homeostasis
GO:0070588; transmembrane calcium ion transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDL128W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "vcx1" ; product "CaCA proton/calcium exchanger (predicted)" ;
chromosome3 GeneDB mRNA 1061985 1064195 . - . mRNA SPCC1259.14c ; systematic_id "SPCC1259.14c" ; colour "12" ; db_xref "SPD:37/37H10" ; obsolete_name "B8647-6" ; Alias "meu27" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, NLS; qualifier=predicted; db_xref=PMID:11376151; cv=sequence_feature; date=19700101 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu27" ; product "S. pombe specific UPF0300 family protein 5" ;
chromosome3 GeneDB mRNA 658832 660321 . + . mRNA SPCC16C4.01 ; systematic_id "SPCC16C4.01" ; colour "7" ; gene "SPCC16C4.01 ||| SPCC5E4.09 ||| sif2" ; Alias "sif2" ; db_xref "SPD:45/45C03" ; synonym "SPCC5E4.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL001W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031965; nuclear membrane
GO:0005816; spindle pole body
GO:0007127; meiosis" ; primary_name "sif2" ; product "Sad1 interacting factor 2 (predicted)" ; reserved_name "sif2" ;
chromosome3 GeneDB mRNA 941416 944601 . + . mRNA SPCC24B10.22 ; systematic_id "SPCC24B10.22" ; colour "2" ; gene "pog1 ||| SPCC24B10.22 ||| SPCPB16A4.01" ; Alias "pog1" ; db_xref "SPD:49/49F06" ; synonym "SPCPB16A4.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR330C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17868468; date=20090107 ||| term=phenotype, adaptive expression responses; qualifier=deletion; cv=phenotype; db_xref=PMID:17868468; date=20090107 ||| term=phenotype, mononucleate; qualifier=low_penetrance|deletion; cv=phenotype; db_xref=PMID:17868468; date=20090107 ||| term=phenotype, septation defects; qualifier=low_penetrance|deletion; cv=phenotype; db_xref=PMID:17868468; date=20090107 ||| term=phenotype, cell morphology, bottle/skittle; qualifier=low_penetrance|deletion|weak; cv=phenotype; db_xref=PMID:17868468; date=20090107 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17868468; date=20090107 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human POLG ortholog; date=20100301 ||| term=disease associated, mitochondrial disorders; date=20100301" ; GO "GO:0003677; DNA binding
GO:0003887; DNA-directed DNA polymerase activity
GO:0006264; mitochondrial DNA replication
GO:0000002; mitochondrial genome maintenance
GO:0007005; mitochondrion organization" ; primary_name "pog1" ; product "mitochondrial DNA polymerase" ; EC_number "2.7.7.7" ;
chromosome3 GeneDB mRNA 2349117 2349721 . - . mRNA SPCC70.02c ; db_xref "SPD:01/01C04" ; systematic_id "SPCC70.02c" ; colour "7" ; GO "GO:0005753; mitochondrial proton-transporting ATP synthase complex
GO:0004857; enzyme inhibitor activity
GO:0032780; negative regulation of ATPase activity
GO:0045978; negative regulation of nucleoside metabolism
GO:0006091; generation of precursor metabolites and energy" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL181W and YDL130W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC70.02c" ; product "mitochondrial ATPase inhibitor (predicted)" ;
chromosome3 GeneDB mRNA 1202257 1204236 . + . mRNA SPCC550.09 ; db_xref "SPD:25/25G10" ; systematic_id "SPCC550.09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR168W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "7" ; gene "SPCC550.09" ; product "peroxin Pex32 (predicted)" ;
chromosome3 GeneDB mRNA 1975555 1976655 . - . mRNA SPCC18.11c ; systematic_id "SPCC18.11c" ; colour "2" ; gene "sdc1 ||| SPCC18.11c" ; Alias "sdc1" ; db_xref "SPD:03/03C06" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0016571; histone methylation
GO:0048189; Lid2 complex
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=orthologous to S. cerevisiae YDR469W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sdc1" ; product "Dpy-30 domain protein Sdc1" ;
chromosome3 GeneDB mRNA 861566 862192 . + . mRNA SPCC63.13 ; systematic_id "SPCC63.13" ; colour "10" ; gene "SPCC63.13" ; note "YMR161W same domain organization and single predicted tmm helix" ; db_xref "SPD:07/07B08" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; product "DNAJ domain protein" ;
chromosome3 GeneDB mRNA 1679877 1683450 . - . mRNA SPCC417.07c ; systematic_id "SPCC417.07c" ; colour "2" ; gene "mto1 ||| mbo1 ||| mod20 ||| SPCC417.07c" ; Alias "mto1" ; db_xref "SPD:30/30D06" ; synonym "mbo1 ||| mod20" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15004232; date=19700101 ||| term=phenotype, cytoskeletal defects, cytoplasmic microtubule nucleation defects, Non- SPB; qualifier=deletion; cv=phenotype; db_xref=PMID:19001497; date=20090114 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=name description, MT Organizer; date=20090418 ||| term=name description, MOrphology Defective; date=20090418 ||| term=name description, MicrotuBule Organizer; date=20090418 ||| term=warning, primary name changed; cv=warning; date=20051504" ; GO "GO:0000923; equatorial microtubule organizing center
GO:0000923; equatorial microtubule organizing center
GO:0015630; microtubule cytoskeleton
GO:0005816; spindle pole body
GO:0005816; spindle pole body
GO:0005516; calmodulin binding
GO:0043015; gamma-tubulin binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0040023; establishment of nucleus localization
GO:0033566; gamma-tubulin complex localization
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center
GO:0030953; spindle astral microtubule organisation" ; primary_name "mto1" ; product "MT organizer Mto1" ;
chromosome3 GeneDB mRNA 2211103 2212441 . + . mRNA SPCC1919.04 ; db_xref "SPD:09/09E09" ; systematic_id "SPCC1919.04" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1919.04" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 748747 751551 . + . mRNA SPCC14G10.04 ; db_xref "SPD:27/27A03" ; systematic_id "SPCC14G10.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=20080318 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC14G10.04" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2197811 2199846 . - . mRNA SPCC830.09c ; db_xref "SPD:03/03D06" ; systematic_id "SPCC830.09c" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0008033; tRNA processing
GO:0005655; nucleolar ribonuclease P complex
GO:0000172; ribonuclease MRP complex
GO:0000171; ribonuclease MRP activity
GO:0004526; ribonuclease P activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC830.09c" ; product "RNase P and RNase MRP subunit (predicted)" ;
chromosome3 GeneDB mRNA 2285041 2286690 . + . mRNA SPCC965.03 ; systematic_id "SPCC965.03" ; colour "7" ; gene "vma8 ||| SPCC965.03" ; Alias "vma8" ; db_xref "SPD:18/18C08" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL051W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000221; vacuolar proton-transporting V-type ATPase, V1 domain
GO:0005524; ATP binding
GO:0046961; hydrogen ion transporting ATPase activity, rotational mechanism
GO:0015991; ATP hydrolysis coupled proton transport
GO:0007035; vacuolar acidification" ; primary_name "vma8" ; product "V-type ATPase V1 subunit D (predicted)" ; EC_number "3.6.3.14" ;
chromosome3 GeneDB mRNA 986079 986684 . - . mRNA SPCC1795.06 ; systematic_id "SPCC1795.06" ; colour "2" ; gene "map2 ||| SPCC1795.06" ; Alias "map2" ; db_xref "SPD:06/06G06" ; GO "GO:0032005; signal transduction during conjugation with cellular fusion
GO:0009986; cell surface
GO:0005576; extracellular region
GO:0000772; mating pheromone activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303" ; primary_name "map2" ; product "P-factor pheromone Map2" ;
chromosome3 GeneDB mRNA 951193 952247 . - . mRNA SPCPB16A4.04c ; systematic_id "SPCPB16A4.04c" ; colour "7" ; gene "SPCPB16A4.04c ||| trm8" ; Alias "trm8" ; db_xref "SPD:41/41H09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL201W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008176; tRNA (guanine-N7-)-methyltransferase activity
GO:0030488; tRNA methylation
GO:0005634; nucleus
GO:0043234; protein complex
GO:0000049; tRNA binding" ; primary_name "trm8" ; product "tRNA (guanine-N7-)-methyltransferase catalytic subunit Trm8 (predicted)" ; EC_number "2.1.1.33" ;
chromosome3 GeneDB mRNA 859516 860393 . - . mRNA SPCC63.12c ; systematic_id "SPCC63.12c" ; colour "7" ; gene "pup3 ||| SPCC63.12c" ; Alias "pup3" ; db_xref "SPD:06/06H06" ; GO "GO:0004175; endopeptidase activity
GO:0019774; proteasome core complex, beta-subunit complex (sensu Eukaryota)
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER094C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pup3" ; product "20S proteasome component beta 3, Pup3 (predicted)" ; EC_number "3.4.25.1" ;
chromosome3 GeneDB mRNA 939926 940750 . + . mRNA SPCC24B10.21 ; systematic_id "SPCC24B10.21" ; colour "2" ; gene "tpi1 ||| tpi ||| SPCC24B10.21" ; Alias "tpi1" ; db_xref "SPD:09/09C02" ; synonym "tpi" ; GO "GO:0005829; cytosol
GO:0004807; triose-phosphate isomerase activity
GO:0006094; gluconeogenesis
GO:0006096; glycolysis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hemolytic anemia; date=20060920 ||| term=orthologous to S. cerevisiae YDR050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tpi1" ; product "triosephosphate isomerase" ; EC_number "5.3.1.1" ;
chromosome3 GeneDB mRNA 1457842 1459437 . + . mRNA SPCC11E10.04 ; db_xref "SPD:20/20F04" ; systematic_id "SPCC11E10.04" ; colour "7" ; GO "GO:0006412; protein biosynthesis
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR282C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC11E10.04" ; product "mitochondrial ATPase expression protein homolog (predicted)" ;
chromosome3 GeneDB mRNA 1726173 1727116 . - . mRNA SPCC1450.01c ; systematic_id "SPCC1450.01c" ; colour "13" ; gene "SPCC191.12c ||| SPCC1450.01c" ; Alias "SPCC191.12c" ; db_xref "SPD:13/13C04" ; pseudo "_no_value" ; synonym "SPCC191.12c" ; primary_name "SPCC191.12c" ; product "pseudogene" ;
chromosome3 GeneDB mRNA 2270193 2271635 . - . mRNA SPCC1840.07c ; db_xref "SPD:14/14F08" ; systematic_id "SPCC1840.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; gene "SPCC1840.07c" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome3 GeneDB mRNA 1454541 1456141 . - . mRNA SPCC11E10.02c ; systematic_id "SPCC11E10.02c" ; colour "2" ; gene "gpi8 ||| SPCC11E10.02c" ; Alias "gpi8" ; db_xref "SPD:18/18A12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11124699; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR331W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complements S. cerevisiae GPI8; db_xref=PMID:17072883; date=20101012" ; GO "GO:0042765; GPI-anchor transamidase complex
GO:0003923; GPI-anchor transamidase activity
GO:0004197; cysteine-type endopeptidase activity
GO:0016255; attachment of GPI anchor to protein" ; primary_name "gpi8" ; product "pig-K" ; EC_number "3.4.17.2" ;
chromosome3 GeneDB mRNA 660740 661188 . - . mRNA SPCC16C4.20c ; db_xref "SPD:01/01H06" ; systematic_id "SPCC16C4.20c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100919 ||| term=species distribution, conserved in Eukaryotes; date=20100919 ||| term=species distribution, conserved in Eukaryotes only; date=20100919 ||| term=species distribution, conserved in Metazoa; date=20100919 ||| term=species distribution, conserved in Vertebrates; date=20100919 ||| term=orthologous to S. cerevisiae YDL002C date=20100919 ||| term=human TBGR1 ortholog; date=20100919 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20101011" ; GO "GO:0031011; Ino80 complex
GO:0045027; DNA end binding
GO:0000404; loop DNA binding
GO:0006302; double-strand break repair
GO:0042766; nucleosome mobilization" ; gene "SPCC16C4.20c" ; product "Ino80 complex subunit (predicted)" ;
chromosome3 GeneDB mRNA 165855 170750 . - . mRNA SPCC320.03 ; db_xref "SPD:38/38E12" ; systematic_id "SPCC320.03" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YBR033W and YKL038W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC320.03" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB mRNA 489970 492280 . + . mRNA SPCC970.10c ; systematic_id "SPCC970.10c" ; colour "2" ; gene "SPCC970.10c ||| brl2 ||| rfp1" ; Alias "brl2" ; db_xref "SPD:37/37D01" ; synonym "rfp1" ; GO "GO:0033503; HULC complex
GO:0033503; HULC complex
GO:0005721; centric heterochromatin
GO:0005634; nucleus
GO:0004842; ubiquitin-protein ligase activity
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0006336; DNA replication-independent nucleosome assembly
GO:0031497; chromatin assembly
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0071894; histone H2B conserved C-terminal lysine ubiquitination
GO:0051569; regulation of histone H3-K4 methylation
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:17363370; date=20100727 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDL074C; date=19700101 ||| term=misc, chromatin assembly function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17374714; date=20070716 ||| term=misc, the chromatin silencing function of H2Bub is independent of H3K4 methylation; db_xref=PMID:17363370; date=20070716 ||| term=name description, RING finger protein; cv=name_description; db_xref=PMID:17363370; date=20070716 ||| term=name description, BRE1-like; cv=name_description; db_xref=PMID:17374714; date=20070716 ||| term=ubiquitin-protein ligase E3; date=20080528 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=orthologous to human RNF20 and RNF40; date=20110113" ; primary_name "brl2" ; product "ubiquitin-protein ligase E3 Brl2" ;
chromosome3 GeneDB mRNA 532541 537053 . + . mRNA SPCP31B10.06 ; systematic_id "SPCP31B10.06" ; colour "10" ; gene "SPCP31B10.06 ||| mug190" ; Alias "mug190" ; db_xref "SPD:48/48D09" ; GO "GO:0016020; membrane
GO:0008289; lipid binding
GO:0005543; phospholipid binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YML072C and YNL087W and YOR086C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug190" ; product "C2 domain protein" ;
chromosome3 GeneDB mRNA 1030256 1030870 . - . mRNA SPCC825.04c ; systematic_id "SPCC825.04c" ; colour "7" ; gene "SPCC825.04c" ; Alias "naa40" ; db_xref "SPD:06/06H07" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004402; histone acetyltransferase activity
GO:0016573; histone acetylation
GO:0017196; N-terminal peptidyl-methionine acetylation
GO:0004596; peptide alpha-N-acetyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR069W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; primary_name "naa40" ; product "histone N-acetyltransferase Naa40 (predicted)" ;
chromosome3 GeneDB mRNA 302352 305280 . - . mRNA SPCC553.03 ; systematic_id "SPCC553.03" ; colour "7" ; gene "pex1 ||| SPCC553.03" ; Alias "pex1" ; db_xref "SPD:47/47D01" ; GO "GO:0005777; peroxisome
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0007031; peroxisome organization and biogenesis
GO:0006996; organelle organization" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YKL197C; date=19700101 ||| term=disease associated, peroxisomal defects; date=20070627 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pex1" ; product "AAA family ATPase Pex1 (predicted)" ;
chromosome3 GeneDB mRNA 1974677 1976491 . + . mRNA SPCC18.10 ; db_xref "SPD:22/22F02" ; systematic_id "SPCC18.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR027W and YEL029C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC18.10" ; product "pyridoxine-pyridoxal-pyridoxamine kinase (predicted)" ; EC_number "2.7.1.35" ;
chromosome3 GeneDB mRNA 1042502 1042886 . - . mRNA SPCC1259.05c ; systematic_id "SPCC1259.05c" ; colour "7" ; gene "cox9 ||| SPCC1259.05c" ; Alias "cox9" ; db_xref "SPD:01/01B05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL067C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration
GO:0005751; respiratory chain complex IV (sensu Eukaryota)" ; primary_name "cox9" ; product "cytochrome c oxidase subunit VIIa (predicted)" ; EC_number "1.9.3.1" ;
chromosome3 GeneDB mRNA 947735 949606 . - . mRNA SPCPB16A4.03c ; systematic_id "SPCPB16A4.03c" ; colour "2" ; gene "ade10 ||| SPCPB16A4.03c" ; db_xref "SPD:49/49C01" ; Alias "ade10" ; GO "GO:0003937; IMP cyclohydrolase activity
GO:0004643; phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0006188; IMP biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR028C and YMR120C; date=19700101 ||| term=catalytic activity, bifunctional enzyme; cv=cat_act; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human ATIC ortholog; date=20100217" ; primary_name "ade10" ; product "IMPcyclohydrolase/phosphoribosylaminoimidazolecarboxamideformyltransferase" ; EC_number "3.5.4.10 ||| 2.1.2.3" ;
chromosome3 GeneDB mRNA 923069 923491 . + . mRNA SPCC24B10.13 ; systematic_id "SPCC24B10.13" ; colour "2" ; gene "skb5 ||| SPCC24B10.13" ; Alias "skb5" ; db_xref "SPD:03/03D12" ; GO "GO:0019901; protein kinase binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR162C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Shk1; qualifier=activates; db_xref=PMID:10593886; date=20100427" ; primary_name "skb5" ; product "Shk1 kinase binding protein 5" ;
chromosome3 GeneDB mRNA 98575 99485 . - . mRNA SPCC613.11c ; systematic_id "SPCC613.11c" ; colour "10" ; db_xref "SPD:09/09E01" ; Alias "meu23" ; synonym "B13958-2" ; GO "GO:0070263; external side of fungal-type cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=protein sequence feature, repeat containing; date=20100426 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20081212 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20100104 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu23" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 2" ;
chromosome3 GeneDB mRNA 2414254 2414553 . + . mRNA SPCC569.09 ; db_xref "PMID:18488015" ; obsolete_name "SPNCRNA.522" ; systematic_id "SPCC569.09" ; synonym "SPNG2623" ; colour "8" ; controlled_curation "term=warning, new gene; cv=warning; db_xref=PMID:18488015; date=20080513 ||| term=species distribution, sequence orphan, uncharacterised; date=20090114 ||| term=species distribution, sequence orphan; date=20090114 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, this may be a none coding RNA; cv=warning; date=20100127" ; gene "SPCC569.09" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 283181 285040 . - . mRNA SPCC553.10 ; db_xref "SPD:16/16A08" ; systematic_id "SPCC553.10" ; colour "10" ; GO "GO:0009986; cell surface" ; controlled_curation "term=; date=19700101 ||| term=similar to N. crassa ncu05667; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; gene "SPCC553.10" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 2102587 2103817 . + . mRNA SPCC576.14 ; systematic_id "SPCC576.14" ; colour "7" ; db_xref "SPD:22/22B12" ; Alias "dph5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR172C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human DPH5 ortholog; date=20100120" ; GO "GO:0005737; cytoplasm
GO:0017183; peptidyl-diphthamide biosynthesis from peptidyl-histidine
GO:0004164; diphthine synthase activity
GO:0006417; regulation of translation" ; primary_name "dph5" ; product "diphthine synthase Dph5 (predicted)" ; EC_number "2.1.1.98" ;
chromosome3 GeneDB mRNA 796749 797969 . - . mRNA SPCC1393.02c ; systematic_id "SPCC1393.02c" ; colour "7" ; gene "SPCC1393.02c ||| spt2" ; Alias "spt2" ; db_xref "SPD:19/19D10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER161C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000122; negative regulation of transcription from RNA polymerase II promoter
GO:0030528; transcription regulator activity
GO:0005720; nuclear heterochromatin
GO:0006338; chromatin remodeling" ; primary_name "spt2" ; product "non-specific DNA binding protein Spt2 (predicted)" ; reserved_name "spt2" ;
chromosome3 GeneDB mRNA 1735272 1736538 . - . mRNA SPCC1450.06c ; systematic_id "SPCC1450.06c" ; colour "2" ; gene "grx3 ||| SPCC1450.06c" ; Alias "grx3" ; db_xref "SPD:04/04H09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=20070523 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15796926; date=19700101 ||| term=orthologous to S. cerevisiae YBR014C and YDL010W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0031965; nuclear membrane
GO:0008794; arsenate reductase (glutaredoxin) activity
GO:0015035; protein disulfide oxidoreductase activity
GO:0034599; cellular response to oxidative stress
GO:0033554; cellular response to stress
GO:0019430; removal of superoxide radicals" ; primary_name "grx3" ; product "monothiol glutaredoxin Grx3" ; EC_number "1.20.4.1" ;
chromosome3 GeneDB mRNA 1878472 1880672 . + . mRNA SPCC297.03 ; systematic_id "SPCC297.03" ; colour "2" ; gene "ssp1 ||| SPCC297.03" ; Alias "ssp1" ; db_xref "SPD:27/27A11" ; GO "GO:0007163; establishment and/or maintenance of cell polarity
GO:0033554; cellular response to stress
GO:0005737; cytoplasm
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0034613; cellular protein localization
GO:0030042; actin filament depolymerization
GO:0051285; cell cortex of cell tip
GO:0030428; cell division site
GO:0004674; protein serine/threonine kinase activity
GO:0061161;
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0007165; signal transduction
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; db_xref=PMID:7628434; date=20100705 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=orthologous to S. cerevisiae YGL179C and YER129W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human CAMKK1 and CAMKK2 ortholog; date=20100908" ; primary_name "ssp1" ; product "serine/threonine protein kinase Ssp1" ;
chromosome3 GeneDB mRNA 2245937 2247145 . + . mRNA SPCC790.03 ; db_xref "SPD:13/13C09" ; systematic_id "SPCC790.03" ; colour "10" ; GO "GO:0030137; COPI-coated vesicle
GO:0005794; Golgi apparatus
GO:0004252; serine-type endopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL246C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; gene "SPCC790.03" ; product "rhomboid family protease" ;
chromosome3 GeneDB mRNA 1478304 1481270 . + . mRNA SPCC188.03 ; systematic_id "SPCC188.03" ; colour "2" ; gene "cnd3 ||| SPCC188.03" ; Alias "cnd3" ; db_xref "SPD:51/51E11" ; GO "GO:0000796; condensin complex
GO:0007076; mitotic chromosome condensation
GO:0005634; nucleus
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10485849; date=19700101 ||| term=phenotype, cut; qualifier=deletion; db_xref=PMID:10485849; date=20100917 ||| term=orthologous to S. cerevisiae YDR325W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=HEAT repeat; date=19700101 ||| term=human NCAPG ortholog; date=20091223" ; primary_name "cnd3" ; product "condensin complex non-SMC subunit Cnd3" ;
chromosome3 GeneDB mRNA 908961 909621 . + . mRNA SPCC24B10.05 ; systematic_id "SPCC24B10.05" ; colour "7" ; gene "SPCC24B10.05 ||| tim9" ; Alias "tim9" ; db_xref "SPD:04/04F07" ; GO "GO:0008565; protein transporter activity
GO:0045039; protein import into mitochondrial inner membrane
GO:0005758; mitochondrial intermembrane space
GO:0042719; mitochondrial intermembrane space protein transporter complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-Tim10/DDP type; date=19700101 ||| term=orthologous to S. cerevisiae YEL020W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure may be incorrect; date=20100606" ; primary_name "tim9" ; product "Tim9-Tim10 complex subunit Tim9 (predicted)" ;
chromosome3 GeneDB mRNA 451857 454770 . + . mRNA SPCC4G3.10c ; systematic_id "SPCC4G3.10c" ; colour "2" ; gene "rhp42 ||| rhp4b ||| SPCC4G3.10c" ; Alias "rhp42" ; db_xref "SPD:37/37C07" ; synonym "rhp4b" ; GO "GO:0006289; nucleotide-excision repair
GO:0006298; mismatch repair
GO:0000109; nucleotide-excision repair complex
GO:0003684; damaged DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060721 ||| term=orthologous to S. cerevisiae YER162C and YDR314C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human XPC ortholog; date=20100217 ||| term=XP-C family; date=20100217" ; primary_name "rhp42" ; product "DNA repair protein Rhp42" ;
chromosome3 GeneDB mRNA 1919282 1921246 . + . mRNA SPCC74.09 ; systematic_id "SPCC74.09" ; colour "10" ; gene "SPCC74.09 ||| mug24" ; Alias "mug24" ; db_xref "SPD:37/37B05" ; GO "GO:0003723; RNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=related to S. pombe Nrd1 (paralog); date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug24" ; product "RNA-binding protein, rrm type" ;
chromosome3 GeneDB mRNA 1383701 1384966 . - . mRNA SPCC1281.03c ; systematic_id "SPCC1281.03c" ; colour "7" ; gene "SPCC1281.03c ||| emc4" ; db_xref "SPD:42/42C11" ; Alias "emc4" ; GO "GO:0033554; cellular response to stress
GO:0034975; protein folding in the endoplasmic reticulum
GO:0072546; ER membrane protein complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL231C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "emc4" ; product "ER membrane protein complex subunit 4 (predicted)" ;
chromosome3 GeneDB mRNA 1186393 1187568 . - . mRNA SPCC550.02c ; systematic_id "SPCC550.02c" ; colour "2" ; gene "cwf5 ||| ecm2 ||| SPCC550.02c" ; Alias "cwf5" ; db_xref "SPD:18/18F08" ; synonym "ecm2" ; GO "GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YBR065C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf5" ; product "RNA-binding protein Cwf5" ;
chromosome3 GeneDB mRNA 632090 634018 . + . mRNA SPCC31H12.06 ; systematic_id "SPCC31H12.06" ; colour "8" ; gene "SPCC31H12.06 ||| mug111" ; db_xref "SPD:23/23B02" ; Alias "mug111" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug111" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2398508 2400815 . - . mRNA SPCP1E11.05c ; systematic_id "SPCP1E11.05c" ; colour "7" ; gene "SPCP1E11.05c" ; Alias "are2" ; db_xref "SPD:44/44E09" ; GO "GO:0005783; endoplasmic reticulum
GO:0034737; ergosterol O-acyltransferase activity
GO:0006696; ergosterol metabolic process
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR048W and YNR019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "are2" ; product "acyl-coA-sterol acyltransferase Are2 (predicted)" ; reserved_name "are2" ;
chromosome3 GeneDB mRNA 2392235 2394391 . + . mRNA SPCP1E11.02 ; systematic_id "SPCP1E11.02" ; colour "2" ; gene "ppk38 ||| SPCP1E11.02" ; Alias "ppk38" ; db_xref "SPD:37/37D07" ; GO "GO:0030479; actin cortical patch
GO:0004674; protein serine/threonine kinase activity
GO:0000147; actin cortical patch assembly
GO:0006468; protein amino acid phosphorylation
GO:0007015; actin filament organization
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0007165; signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YNL020C and YIL095W and YBR059C; date=19700101 ||| term=modification, phosphorylated; qualifier=predicted; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk38" ; product "Ark1/Prk1 family protein kinase Ppk38" ;
chromosome3 GeneDB mRNA 1896025 1897513 . - . mRNA SPCC737.06c ; systematic_id "SPCC737.06c" ; colour "7" ; gene "SPCC737.06c" ; note "glutamate-cysteine ligase catalytic subunit has EC 6.3.2.2" ; db_xref "SPD:18/18C07" ; GO "GO:0017109; glutamate-cysteine ligase complex
GO:0004033; aldo-keto reductase activity
GO:0030234; enzyme regulator activity
GO:0035226; glutamate-cysteine ligase catalytic subunit binding
GO:0035229; positive regulation of glutamate- cysteine ligase activity
GO:0006750; glutathione biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "glutamate-cysteine ligase regulatory subunit (predicted)" ;
chromosome3 GeneDB mRNA 2242362 2245605 . + . mRNA SPCC790.02 ; systematic_id "SPCC790.02" ; colour "7" ; gene "pep3 ||| SPCC790.02" ; Alias "pep3" ; db_xref "SPD:29/29F02" ; synonym "vps18" ; GO "GO:0030897; HOPS complex
GO:0042144; vacuole fusion, non-autophagic
GO:0048278; vesicle docking
GO:0007033; vacuole organization and biogenesis
GO:0045324; late endosome to vacuole transport
GO:0006895; Golgi to endosome transport
GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YLR148W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pep3" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome3 GeneDB mRNA 2329371 2332452 . - . mRNA SPCC1494.05c ; systematic_id "SPCC1494.05c" ; colour "2" ; gene "ubp12 ||| SPCC1494.05c" ; db_xref "SPD:47/47E09" ; Alias "ubp12" ; GO "GO:0004221; ubiquitin thiolesterase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL197W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human USP4 and USP15 ortholog; date=20101001" ; primary_name "ubp12" ; product "CSN-associated deubiquitinating enzyme Ubp12" ;
chromosome3 GeneDB mRNA 1705835 1707650 . + . mRNA SPCC191.01 ; systematic_id "SPCC191.01" ; colour "8" ; gene "SPCC417.13 ||| SPCC191.01" ; Alias "SPCC417.13" ; db_xref "SPD:05/05D10" ; synonym "SPCC417.13" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "SPCC417.13" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 378595 381034 . - . mRNA SPCC1682.05c ; systematic_id "SPCC1682.05c" ; colour "7" ; gene "SPCC1682.05c ||| srp68" ; Alias "srp68" ; db_xref "SPD:27/27B11" ; GO "GO:0030942; endoplasmic reticulum signal peptide binding
GO:0006617; SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
GO:0005786; signal recognition particle (sensu Eukaryota)" ; controlled_curation "term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL243W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "srp68" ; product "signal recognition particle subunit (predicted)" ;
chromosome3 GeneDB mRNA 503006 504655 . - . mRNA SPCC970.06 ; db_xref "SPD:12/12E12" ; systematic_id "SPCC970.06" ; colour "7" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=surfeit locus (SURF40 family); date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR284C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC970.06" ; product "cargo receptor for soluble proteins (predicted)" ;
chromosome3 GeneDB mRNA 2186723 2187154 . - . mRNA SPCC830.04c ; systematic_id "SPCC830.04c" ; colour "8" ; gene "SPCC830.04c ||| mug128" ; db_xref "SPD:03/03F04" ; Alias "mug128" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug128" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 570105 571477 . - . mRNA SPCC1672.05c ; systematic_id "SPCC1672.05c" ; colour "7" ; gene "SPCC1672.05c ||| yrs1" ; Alias "yrs1" ; db_xref "KEGG:MAP00400; ||| KEGG:MAP00970; ||| SPD:34/34E02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR185C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006437; tyrosyl-tRNA aminoacylation
GO:0004831; tyrosine-tRNA ligase activity
GO:0005737; cytoplasm" ; primary_name "yrs1" ; product "cytoplasmic tyrosine-tRNA ligase Yrs1 (predicted)" ; EC_number "6.1.1.1" ;
chromosome3 GeneDB mRNA 1435080 1436649 . + . mRNA SPCC622.17 ; systematic_id "SPCC622.17" ; colour "2" ; gene "apn1 ||| SPCC622.17" ; Alias "apn1" ; db_xref "SPD:17/17C08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16857169; date=20060823 ||| term=orthologous to S. cerevisiae YKL114C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:14704348; cv=warning; date=20040413 ||| term=warning, gene structure updated; db_xref=PMID:21193357; date=20110106" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0003906; DNA-(apurinic or apyrimidinic site) lyase activity
GO:0008311; double-stranded DNA specific 3'-5' exodeoxyribonuclease activity
GO:0006284; base-excision repair" ; primary_name "apn1" ; product "AP endonuclease Apn1" ; EC_number "4.2.99.18" ;
chromosome3 GeneDB mRNA 144350 145562 . + . mRNA SPCC320.11c ; systematic_id "SPCC320.11c" ; colour "7" ; gene "SPCC330.18 ||| SPCC320.11c" ; Alias "SPCC330.18" ; db_xref "SPD:11/11D07" ; synonym "SPCC330.18" ; GO "GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PUA domain; date=19700101 ||| term=orthologous to S. cerevisiae YPL211W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPCC330.18" ; product "RNA-binding protein involved in ribosome biogenesis (predicted)" ;
chromosome3 GeneDB mRNA 1595042 1596061 . - . mRNA SPCC13B11.03c ; db_xref "SPD:15/15C05" ; systematic_id "SPCC13B11.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR272W and YOR040W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004416; hydroxyacylglutathione hydrolase activity
GO:0019243; methylglyoxal catabolism to D-lactate
GO:0051595; response to methylglyoxal
GO:0044262; cellular carbohydrate metabolic process" ; gene "SPCC13B11.03c" ; product "hydroxyacylglutathione hydrolase (predicted)" ; EC_number "3.1.2.6" ;
chromosome3 GeneDB mRNA 1449606 1451015 . + . mRNA SPCC61.05 ; db_xref "SPD:21/21G07" ; systematic_id "SPCC61.05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPCC61.05" ; product "S. pombe specific multicopy membrane protein family 1" ;
chromosome3 GeneDB mRNA 365836 366991 . - . mRNA SPCC594.06c ; db_xref "SPD:16/16C07" ; systematic_id "SPCC594.06c" ; colour "7" ; GO "GO:0035091; phosphoinositide binding
GO:0005484; SNAP receptor activity
GO:0006896; Golgi to vacuole transport
GO:0006906; vesicle fusion
GO:0000329; vacuolar membrane (sensu Fungi)
GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YGL212W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC594.06c" ; product "vacuolar SNARE Vam7 (predicted)" ;
chromosome3 GeneDB mRNA 833721 836015 . - . mRNA SPCC63.02c ; systematic_id "SPCC63.02c" ; colour "2" ; gene "aah3 ||| SPCC63.02c" ; Alias "aah3" ; db_xref "SPD:45/45E11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, glycosylated; qualifier=N-linked; cv=pt_mod; db_xref=PMID:12845604; date=20060611 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060611 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0009986; cell surface
; cell wall
GO:0009897; external side of plasma membrane
GO:0005886; plasma membrane
GO:0004556; alpha-amylase activity
GO:0016798; hydrolase activity, acting on glycosyl bonds
GO:0008360; regulation of cell shape
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0044247; cellular polysaccharide catabolism
GO:0016192; vesicle-mediated transport
GO:0030476; spore wall assembly (sensu Fungi)
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "aah3" ; product "alpha-amylase homolog Aah3" ; EC_number "3.2.1.1" ;
chromosome3 GeneDB mRNA 733403 736374 . - . mRNA SPCC18B5.08c ; db_xref "KEGG:MAP00290; ||| KEGG:MAP00970; ||| SPD:47/47E04" ; systematic_id "SPCC18B5.08c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004822; isoleucine-tRNA ligase activity
GO:0006428; isoleucyl-tRNA aminoacylation" ; gene "SPCC18B5.08c" ; product "mitochondrial isoleucine-tRNA ligase (predicted)" ; EC_number "6.1.1.5" ;
chromosome3 GeneDB mRNA 850000 852643 . - . mRNA SPCC63.08c ; systematic_id "SPCC63.08c" ; colour "2" ; gene "SPCC63.08c" ; Alias "atg1" ; db_xref "SPD:29/29D03" ; synonym "ppk36 ||| cvt10" ; GO "GO:0016239; positive regulation of macroautophagy
GO:0005829; cytosol
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0007165; signal transduction
GO:0032258; CVT pathway
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0000747; sexual reproduction
GO:0006914; autophagy
GO:0006995; cellular response to nitrogen starvation
GO:0016236; macroautophagy" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YGL180W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "atg1" ; product "autophagy and CVT pathway serine/threonine protein kinase Atg1" ;
chromosome3 GeneDB mRNA 2101753 2102400 . + . mRNA SPCC576.13 ; systematic_id "SPCC576.13" ; colour "2" ; gene "SPCC576.13 ||| swc5" ; Alias "swc5" ; db_xref "SPD:07/07E02" ; GO "GO:0000812; Swr1 complex
GO:0006338; chromatin remodeling
GO:0043486; histone exchange" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR231C; date=19700101 ||| term=disease associated, bucentaur or craniofacial development; date=20080622 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "swc5" ; product "Swr1 complex subunit Swc5" ;
chromosome3 GeneDB mRNA 382225 383138 . + . mRNA SPCC1682.06 ; systematic_id "SPCC1682.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=similar to S. pombe SPBC18H10.18C; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1682.06" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 399004 400433 . + . mRNA SPCC1682.13 ; systematic_id "SPCC1682.13" ; colour "2" ; gene "laf2 ||| SPCC1682.13" ; Alias "laf2" ; db_xref "SPD:10/10E09" ; GO "GO:0006338; chromatin remodeling
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0003677; DNA binding
GO:0032221; Clr6 histone deacetylase complex I/I
GO:0070210; Rpd3L-Expanded
GO:0016575; histone deacetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL034C and YOR338W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "laf2" ; product "Clr6 associated factor 2, Laf2" ;
chromosome3 GeneDB mRNA 1900480 1914727 . + . mRNA SPCC737.08 ; db_xref "SPD:50/50A03" ; systematic_id "SPCC737.08" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0005509; calcium ion binding
GO:0006364; rRNA processing
GO:0000027; ribosomal large subunit assembly and maintenance" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=AAA family ATPase; date=19700101 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YLR106C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC737.08" ; product "midasin (predicted)" ;
chromosome3 GeneDB mRNA 407598 408845 . - . mRNA SPCC306.02c ; db_xref "SPD:06/06C08" ; systematic_id "SPCC306.02c" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030134; ER to Golgi transport vesicle
GO:0017137; Rab GTPase binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL044W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC306.02c" ; product "Rab GTPase binding involved in ER to Golgi vesicle transport (predicted)" ;
chromosome3 GeneDB mRNA 139017 140447 . - . mRNA SPCC320.14 ; systematic_id "SPCC320.14" ; colour "7" ; gene "SPCC330.15c ||| SPCC320.14" ; note "annotations dervived from PMID:12951240, previously annotated as threonine dehydratase" ; Alias "SPCC330.15c" ; db_xref "KEGG:MAP00260; ||| SPD:13/13H05" ; synonym "SPCC330.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL218C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006567; threonine catabolism
GO:0030848; threo-3-hydroxyaspartate ammonia-lyase activity" ; primary_name "SPCC330.15c" ; product "threo-3-hydroxyaspartate ammonia-lyase (predicted)" ; EC_number "4.3.1.16" ;
chromosome3 GeneDB mRNA 1367724 1368405 . - . mRNA SPCC338.04 ; systematic_id "SPCC338.04" ; colour "2" ; gene "cid2 ||| SPCC338.04" ; db_xref "SPD:05/05H07" ; Alias "cid2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL107C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cid2" ; product "caffeine induced death protein Cid2" ;
chromosome3 GeneDB mRNA 1365112 1365641 . + . mRNA SPCC338.06c ; db_xref "SPD:03/03D05" ; systematic_id "SPCC338.06c" ; colour "7" ; GO "GO:0034605; cellular response to heat
GO:0061077; chaperone-mediated protein folding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, chaperone; qualifier=predicted; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YBR072W and YDR171W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC338.06c" ; product "heat shock protein Hsp20 family (predicted)" ;
chromosome3 GeneDB mRNA 1258412 1260995 . + . mRNA SPCC645.13 ; db_xref "SPD:37/37G04" ; systematic_id "SPCC645.13" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003711; transcriptional elongation regulator activity
GO:0034244; negative regulation of transcription elongation from RNA polymerase II promoter
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-PHD finger; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC645.13" ; product "transcription elongation regulator (predicted)" ;
chromosome3 GeneDB mRNA 2353571 2354409 . - . mRNA SPCC70.04c ; db_xref "SPD:43/43D05" ; systematic_id "SPCC70.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC70.04c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1710842 1711294 . - . mRNA SPCC191.03c ; db_xref "SPD:02/02D03" ; systematic_id "SPCC191.03c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC191.03c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1657631 1659783 . - . mRNA SPCC663.14c ; db_xref "SPD:37/37F04" ; systematic_id "SPCC663.14c" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL053W and YGL139W and YPL221W and YOR365C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC663.14c" ; product "TRP-like ion channel (predicted)" ;
chromosome3 GeneDB mRNA 2029511 2033306 . + . mRNA SPCC1739.03 ; systematic_id "SPCC1739.03" ; colour "2" ; gene "hrr1 ||| SPCC1739.03" ; Alias "hrr1" ; db_xref "SPD:30/30A11" ; GO "GO:0031048; small RNA-mediated chromatin silencing
GO:0030702; chromatin silencing at centromere
GO:0031379; RNA-directed RNA polymerase complex
GO:0005634; nucleus
GO:0004386; helicase activity
GO:0005515; protein binding
GO:0031380; nuclear RNA-directed RNA polymerase complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=DEAD/DEAH box helicase; qualifier=predicted; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "hrr1" ; product "Helicase Required for RNAi-mediated heterochromatin assembly Hrr1" ;
chromosome3 GeneDB mRNA 2386019 2387563 . - . mRNA SPCC1827.06c ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00300; ||| SPD:21/21C12" ; systematic_id "SPCC1827.06c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR158W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009088; threonine biosynthesis
GO:0009086; methionine biosynthesis
GO:0004073; aspartate-semialdehyde dehydrogenase activity" ; gene "SPCC1827.06c" ; product "aspartate semialdehyde dehydrogenase (predicted)" ; EC_number "1.2.1.11" ;
chromosome3 GeneDB mRNA 2012545 2014000 . + . mRNA SPCC1906.01 ; systematic_id "SPCC1906.01" ; colour "2" ; gene "mpg1 ||| SPCC1906.01" ; note "deletion mutant results in G2/M arrest (cell size checkpoint) activation mediated be Wee1" ; Alias "mpg1" ; db_xref "SPD:17/17B05" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16049679; date=19700101 ||| term=orthologous to S. cerevisiae YDL055C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004475; mannose-1-phosphate guanylyltransferase activity
GO:0009298; GDP-mannose biosynthesis
GO:0000032; cell wall mannoprotein biosynthesis
GO:0006486; protein amino acid glycosylation
GO:0005737; cytoplasm
GO:0051286; cell tip
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0031567; cell size control checkpoint" ; primary_name "mpg1" ; product "mannose-1-phosphate guanyltransferase Mpg1" ; EC_number "2.7.7.13" ;
chromosome3 GeneDB mRNA 1154076 1156055 . - . mRNA SPCC4B3.12 ; systematic_id "SPCC4B3.12" ; colour "2" ; gene "set9 ||| SPCC4B3.12" ; Alias "set9" ; db_xref "SPD:23/23A10" ; synonym "SPCC4B3.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=20070412 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15550243; date=20070412 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15550243; date=20090110 ||| term=human SUV42OH1 and SUV42OH2 ortholog; date=20100908" ; GO "GO:0000790; nuclear chromatin
GO:0042799; histone lysine N-methyltransferase activity (H4-K20 specific)
GO:0000077; DNA damage checkpoint
GO:0000077; DNA damage checkpoint
GO:0000077; DNA damage checkpoint
GO:0034613; cellular protein localization
GO:0006342; chromatin silencing
GO:0016571; histone methylation
GO:0006355; regulation of transcription, DNA- dependent" ; primary_name "set9" ; product "histone lysine methyltransferase Set9" ;
chromosome3 GeneDB mRNA 702607 704337 . + . mRNA SPCPJ732.01 ; systematic_id "SPCPJ732.01" ; colour "2" ; gene "vps5 ||| SPCPJ732.01" ; Alias "vps5" ; db_xref "SPD:49/49B09" ; GO "GO:0005768; endosome
GO:0005768; endosome
GO:0031965; nuclear membrane
GO:0005628; prospore membrane
GO:0030904; retromer complex
GO:0030904; retromer complex
GO:0035091; phosphoinositide binding
GO:0006886; intracellular protein transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0030437; sporulation (sensu Fungi)
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR069W; date=19700101 ||| term=localization dependent on Pik3; db_xref=PMID:15189449; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "vps5" ; product "retromer complex subunit Vps5" ;
chromosome3 GeneDB mRNA 270960 272777 . + . mRNA SPCC794.10 ; db_xref "SPD:24/24C12" ; systematic_id "SPCC794.10" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL035W and YHL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0003983; UTP:glucose-1-phosphate uridylyltransferase activity
GO:0006011; UDP-glucose metabolism
GO:0005737; cytoplasm" ; gene "SPCC794.10" ; product "UTP-glucose-1-phosphate uridylyltransferase (predicted)" ; EC_number "2.7.7.9" ;
chromosome3 GeneDB mRNA 1955756 1959168 . + . mRNA SPCC18.03 ; db_xref "SPD:48/48B02" ; systematic_id "SPCC18.03" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=zf-NF-X1 zinc finger; date=19700101 ||| term=orthologous to S. cerevisiae YNL023C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC18.03" ; product "shuttle craft like transcriptional regulator (predicted)" ;
chromosome3 GeneDB mRNA 279434 280999 . + . mRNA SPCC553.12c ; db_xref "SPD:45/45B03" ; systematic_id "SPCC553.12c" ; synonym "SPCC794.13" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC553.12c ||| SPCC794.13" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 1373086 1381763 . + . mRNA SPCC1281.01 ; systematic_id "SPCC1281.01" ; colour "2" ; gene "ags1 ||| mok1 ||| SPCC338.01c ||| SPCC17A7.01 ||| SPCC1281.01" ; Alias "ags1" ; db_xref "SPD:48/48H12" ; synonym "mok1 ||| SPCC338.01c ||| SPCC17A7.01" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070309 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20070309 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9689051; date=20070309 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0009897; external side of plasma membrane
GO:0005887; integral to plasma membrane
GO:0009898; internal side of plasma membrane
GO:0033201; alpha-1,4-glucan synthase activity
GO:0004556; alpha-amylase activity
GO:0030979; alpha-glucan biosynthesis
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; primary_name "ags1" ; product "alpha-1,4-glucan synthase Ags1" ; EC_number "3.2.1.1 ||| 2.4.1.-" ;
chromosome3 GeneDB mRNA 131517 135560 . + . mRNA SPCC330.11 ; systematic_id "SPCC330.11" ; colour "2" ; gene "btb1 ||| SPCC330.11" ; Alias "btb1" ; db_xref "SPD:30/30E11" ; GO "GO:0000151; ubiquitin ligase complex
GO:0005515; protein binding
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=regulator of condensation (RCC1) domains; qualifier=inferred from context; date=20060825 ||| term=BTB/POZ domain; date=19700101 ||| term=ankyrin repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "btb1" ; product "BTB/POZ domain protein Btb1" ;
chromosome3 GeneDB mRNA 1182787 1185261 . + . mRNA SPCP25A2.03 ; db_xref "SPD:28/28E03" ; systematic_id "SPCP25A2.03" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human THOC1 ortholog; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; GO "GO:0000347; THO complex
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006406; mRNA export from nucleus" ; gene "SPCP25A2.03" ; product "THO complex subunit (predicted)" ;
chromosome3 GeneDB mRNA 1602954 1604519 . + . mRNA SPCC777.04 ; db_xref "SPD:45/45B04" ; systematic_id "SPCC777.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL265W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPCC777.04" ; product "amino acid transporter (predicted)" ;
chromosome3 GeneDB mRNA 2376397 2378127 . - . mRNA SPCC1827.02c ; db_xref "SPD:18/18G07" ; systematic_id "SPCC1827.02c" ; colour "7" ; GO "GO:0046474; glycerophospholipid biosynthesis
GO:0004105; choline-phosphate cytidylyltransferase activity
GO:0006657; CDP-choline pathway
GO:0006656; phosphatidylcholine biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR202C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC1827.02c" ; product "cholinephosphate cytidylyltransferase (predicted)" ;
chromosome3 GeneDB mRNA 1504941 1506145 . + . mRNA SPCC188.12 ; systematic_id "SPCC188.12" ; colour "7" ; gene "spn6 ||| SPCC584.09 ||| SPCC188.12" ; Alias "spn6" ; db_xref "SPD:22/22B01" ; synonym "SPCC584.09" ; GO "GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during sporulation; cv=gene_ex; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe Spn4; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "spn6" ; product "septin Spn6 (predicted)" ;
chromosome3 GeneDB mRNA 409505 412067 . - . mRNA SPCC306.03c ; systematic_id "SPCC306.03c" ; colour "2" ; gene "cnd2 ||| SPCC306.03c" ; Alias "cnd2" ; db_xref "SPD:38/38A10" ; GO "GO:0000796; condensin complex
GO:0007076; mitotic chromosome condensation
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0006281; DNA repair" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, cut; qualifier=deletion; db_xref=PMID:10485849; date=20100917 ||| term=orthologous to S. cerevisiae YBL097W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human NCAPH ortholog; date=19700101" ; primary_name "cnd2" ; product "condensin complex non-SMC subunit Cnd2" ;
chromosome3 GeneDB mRNA 2248859 2256606 . - . mRNA SPCC1840.02c ; systematic_id "SPCC1840.02c" ; colour "2" ; gene "bgs4 ||| orb11 ||| cwg1 ||| SPCC1840.02c" ; Alias "bgs4" ; db_xref "SPD:34/34B11" ; synonym "orb11 ||| cwg1" ; GO "GO:0030428; cell septum
GO:0051286; cell tip
GO:0005826; contractile ring
GO:0005887; integral to plasma membrane
GO:0030427; site of polarized growth
GO:0003843; 1,3-beta-glucan synthase activity
GO:0034411; cellular 1,3-beta-glucan biosynthetic process
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0008360; regulation of cell shape
GO:0033205; cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, round cells; qualifier=overexpression; db_xref=PMID:15615781; date=20100731 ||| term=phenotype, cell morphology, stubby cells; qualifier=overexpression; db_xref=PMID:15615781; date=20100731 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:15615781; date=20100731 ||| term=phenotype, cell morphology, misshapen cells; qualifier=overexpression; db_xref=PMID:15615781; date=20100731 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20061117 ||| term=orthologous to S. cerevisiae YLR342W and YGR032W and YMR306W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "bgs4" ; product "1,3-beta-glucan synthase subunit Bgs4" ; EC_number "2.4.1.34" ;
chromosome3 GeneDB mRNA 1200989 1201732 . + . mRNA SPCC550.08 ; db_xref "SPD:09/09A09" ; systematic_id "SPCC550.08" ; colour "10" ; GO "GO:0008080; N-acetyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR012W and YDR391C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPCC550.08" ; product "N-acetyltransferase (predicted)" ;
chromosome3 GeneDB mRNA 2122681 2123893 . - . mRNA SPCC126.04c ; systematic_id "SPCC126.04c" ; colour "2" ; gene "SPCC126.04c ||| sgf73" ; Alias "sgf73" ; db_xref "SPD:17/17D04" ; GO "GO:0016568; chromatin modification
GO:0016573; histone acetylation
GO:0006338; chromatin remodeling
GO:0006366; transcription from RNA polymerase II promoter
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, spinocerebellar ataxia; date=19700101 ||| term=orthologous to S. cerevisiae YGL066W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706 ||| term=disease associated, neurological disorders; date=20091217" ; primary_name "sgf73" ; product "SAGA complex subunit Sgf73" ;
chromosome3 GeneDB mRNA 2366517 2367367 . - . mRNA SPCC70.07c ; systematic_id "SPCC70.07c" ; colour "2" ; gene "tmp1 ||| tmp ||| SPCC70.07c" ; Alias "tmp1" ; db_xref "SPD:09/09F11" ; synonym "tmp" ; GO "GO:0004798; thymidylate kinase activity
GO:0006235; dTTP biosynthesis
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR057W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tmp1" ; product "thymidylate kinase Tmp1" ; EC_number "2.7.4.9" ;
chromosome3 GeneDB mRNA 2109181 2110528 . - . mRNA SPCC576.16c ; Alias "wtf22" ; systematic_id "SPCC576.16c" ; pseudo "_no_value" ; colour "13" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; gene "wtf22 ||| SPCC576.16c" ; primary_name "wtf22" ; product "pseudogene wtf element Wtf22" ;
chromosome3 GeneDB mRNA 378213 378925 . + . mRNA SPCC1682.04 ; systematic_id "SPCC1682.04" ; colour "2" ; gene "cdc31 ||| SPCC1682.04" ; Alias "cdc31" ; db_xref "SPD:08/08B10" ; GO "GO:0005825; half bridge of spindle pole body
GO:0005509; calcium ion binding
GO:0005198; structural molecule activity
GO:0034613; cellular protein localization
GO:0030474; spindle pole body duplication
GO:0007096; regulation of exit from mitosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12857865; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance|deletion; db_xref=PMID:12857865; date=20100630 ||| term=phenotype, cut; qualifier=deletion; db_xref=PMID:12857865; date=20100630 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YOR257W; date=19700101 ||| term=human CETN3 ortholog; db_xref=UniProtKB:O15182; date=20080624 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100805" ; primary_name "cdc31" ; product "centrin" ;
chromosome3 GeneDB mRNA 1506166 1510532 . - . mRNA SPCC188.13c ; systematic_id "SPCC188.13c" ; colour "2" ; gene "dcr1 ||| SPCC188.13c ||| SPCC584.10c" ; Alias "dcr1" ; db_xref "SPD:30/30F09" ; synonym "SPCC584.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=PAZ domain; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=disease associated, cancer; date=20100217 ||| term=human DICER1 ortholog; date=20100217 ||| term=phenotype, accumulation of non- coding outer repeat transcripts; cv=phenotype; date=20100318 ||| term=phenotype, siRNAs homologous to outer repeats undetectable; cv=phenotype; date=20100318" ; GO "GO:0005720; nuclear heterochromatin
GO:0005524; ATP binding
GO:0008026; ATP-dependent helicase activity
GO:0003723; RNA binding
GO:0004540; ribonuclease activity
GO:0030422; RNA interference, production of siRNA
GO:0006396; RNA processing
GO:0034613; cellular protein localization
GO:0090052; regulation of chromatin silencing at centromere
GO:0051983; regulation of chromosome segregation
GO:0035196; miRNA-mediated gene silencing, production of miRNAs
GO:0051570; regulation of histone H3-K9 methylation
GO:0031048; small RNA-mediated chromatin silencing
GO:0035389; establishment of chromatin silencing at mating-type cassette" ; primary_name "dcr1" ; product "dicer" ;
chromosome3 GeneDB mRNA 1176681 1177726 . + . mRNA SPCC4B3.02c ; db_xref "SPD:07/07D06" ; systematic_id "SPCC4B3.02c" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006895; Golgi to endosome transport
GO:0006886; intracellular protein transport
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR292W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC4B3.02c" ; product "Golgi transport protein Got1 (predicted)" ;
chromosome3 GeneDB mRNA 1041347 1042115 . + . mRNA SPCC1259.04 ; systematic_id "SPCC1259.04" ; colour "2" ; gene "iec3 ||| SPCC1259.04" ; Alias "iec3" ; db_xref "SPD:05/05H01" ; GO "GO:0031011; Ino80 complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080729 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "iec3" ; product "Ino80 complex subunit Iec3" ;
chromosome3 GeneDB mRNA 595021 596054 . + . mRNA SPCC1183.02 ; db_xref "SPD:13/13C03" ; systematic_id "SPCC1183.02" ; colour "7" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR201C and YKL081W and YPL048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=thioredoxin family; date=20081111" ; gene "SPCC1183.02" ; product "glutathione S-transferase (predicted)" ;
chromosome3 GeneDB mRNA 1146375 1147200 . - . mRNA SPCC4B3.16 ; systematic_id "SPCC4B3.16" ; colour "2" ; gene "tip41 ||| SPCC4B3.16" ; Alias "tip41" ; db_xref "SPD:43/43B07" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008601; protein phosphatase type 2A regulator activity
GO:0010389; regulation of G2/M transition of mitotic cell cycle
GO:0031929; TOR signaling pathway
GO:0006995; cellular response to nitrogen starvation" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:16297994; date=19700101 ||| term=orthologous to S. cerevisiae YPR040W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tip41" ; product "TIP41-like type 2a phosphatase regulator Tip41" ;
chromosome3 GeneDB mRNA 932007 932775 . + . mRNA SPCC24B10.18 ; db_xref "SPD:06/06H09" ; systematic_id "SPCC24B10.18" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR363W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c19orf53 ortholog; date=20100728" ; colour "10" ; gene "SPCC24B10.18" ; product "human Leydig cell tumor 10 kDa protein homolog" ;
chromosome3 GeneDB mRNA 470119 472316 . - . mRNA SPCC364.07 ; systematic_id "SPCC364.07" ; colour "7" ; gene "SPCC4G3.01 ||| SPCC364.07" ; Alias "SPCC4G3.01" ; db_xref "KEGG:MAP00260; ||| SPD:21/21F10" ; synonym "SPCC4G3.01" ; GO "GO:0006564; L-serine biosynthesis
GO:0004617; phosphoglycerate dehydrogenase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER081W and YIL074C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPCC4G3.01" ; product "D-3 phosphoglycerate dehydrogenase (predicted)" ; EC_number "1.1.1.95" ;
chromosome3 GeneDB mRNA 1759295 1760998 . - . mRNA SPCC1450.14c ; systematic_id "SPCC1450.14c" ; colour "2" ; gene "ero12 ||| SPCC1450.14c" ; Alias "ero12" ; db_xref "SPD:36/36G03" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0015035; protein disulfide oxidoreductase activity
GO:0006467; protein thiol-disulfide exchange
GO:0034975; protein folding in the endoplasmic reticulum" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML130C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; primary_name "ero12" ; product "ER protein folding oxidoreductin Ero1b" ;
chromosome3 GeneDB mRNA 1207623 1211442 . + . mRNA SPCC550.11 ; db_xref "SPD:48/48C05" ; systematic_id "SPCC550.11" ; colour "7" ; GO "GO:0006606; protein import into nucleus
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008565; protein transporter activity
GO:0006406; mRNA export from nucleus
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YJR132W and YDR395W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC550.11" ; product "karyopherin (predicted)" ;
chromosome3 GeneDB mRNA 1000974 1002296 . - . mRNA SPCC895.04c ; systematic_id "SPCC895.04c" ; colour "7" ; gene "ufe1 ||| SPCC895.04c" ; Alias "ufe1" ; db_xref "SPD:19/19H06" ; GO "GO:0005484; SNAP receptor activity
GO:0016192; vesicle-mediated transport
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; qualifier=predicted; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR075W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ufe1" ; product "SNARE Ufe1 (predicted)" ;
chromosome3 GeneDB mRNA 559876 561277 . + . mRNA SPCC1672.01 ; db_xref "SPD:19/19C08" ; systematic_id "SPCC1672.01" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR025C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110" ; GO "GO:0004401; histidinol-phosphatase activity
GO:0000105; histidine biosynthesis" ; gene "SPCC1672.01" ; product "histidinol-phosphatase (predicted)" ; EC_number "3.1.3.15" ;
chromosome3 GeneDB mRNA 1708073 1710511 . - . mRNA SPCC191.02c ; systematic_id "SPCC191.02c" ; colour "7" ; gene "SPCC191.02c ||| SPCC417.14c" ; db_xref "SPD:27/27C09" ; synonym "SPCC417.14c" ; GO "GO:0003987; acetate-CoA ligase activity
GO:0006084; acetyl-CoA metabolism
GO:0016208; AMP binding
GO:0019654; acetate fermentation
GO:0005829; cytosol
GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL054C and YLR153C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "acetyl-CoA ligase (predicted)" ; EC_number "6.2.1.1" ;
chromosome3 GeneDB mRNA 85338 85932 . + . mRNA SPCC613.03 ; db_xref "SPD:06/06A08" ; systematic_id "SPCC613.03" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005509; calciom ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YLR250W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC613.03" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 1165188 1165790 . + . mRNA SPCC4B3.06c ; db_xref "SPD:06/06G01" ; systematic_id "SPCC4B3.06c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR011W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0008752; FMN reductase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPCC4B3.06c" ; product "NADPH-dependent FMN reductase (predicted)" ; EC_number "1.5.1.29" ;
chromosome3 GeneDB mRNA 944545 946360 . - . mRNA SPCPB16A4.02c ; db_xref "SPD:50/50F08" ; systematic_id "SPCPB16A4.02c" ; colour "10" ; GO "GO:0035091; phosphoinositide binding
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YBR129C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCPB16A4.02c" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 1888625 1890747 . - . mRNA SPCC737.03c ; systematic_id "SPCC737.03c" ; colour "2" ; gene "SPCC737.03c" ; Alias "ima1" ; db_xref "SPD:46/46A04" ; GO "GO:0005639; integral to nuclear inner membrane
GO:0034992; microtubule organizing center attachment site
GO:0005637; nuclear inner membrane
GO:0034994; microtubule organizing center attachment site organization
GO:0051313; attachment of spindle microtubules to chromosome
GO:0006997; nuclear organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Inner MTOC Attachment site; date=20100806" ; primary_name "ima1" ; product "integral inner nuclear membrane protein Ima1" ;
chromosome3 GeneDB mRNA 348692 351165 . + . mRNA SPCC736.15 ; db_xref "SPD:16/16B07" ; systematic_id "SPCC736.15" ; GO "GO:0006897; endocytosis
GO:0032126; eisosome
GO:0004860; protein kinase inhibitor activity
GO:0005737; cytoplasm
GO:0005741; mitochondrial outer membrane" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR086C and YPL004C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "7" ; gene "SPCC736.15" ; product "protein kinase inhibitor associated with endocytosis (predicted)" ;
chromosome3 GeneDB mRNA 440054 441462 . - . mRNA SPCC4G3.16 ; db_xref "SPD:19/19D06" ; systematic_id "SPCC4G3.16" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0009982; pseudouridine synthase activity
GO:0031119; tRNA pseudouridine synthesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL036C and YOL066C; qualifier=C_term; date=19700101 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20080326" ; gene "SPCC4G3.16" ; product "CMP deaminase family/ methyltransferase bifunctional enzyme involved in riboflavin biosynthesis and tRNA pseudouridine biosynthesis" ;
chromosome3 GeneDB mRNA 541065 545850 . + . mRNA SPCC962.01 ; systematic_id "SPCC962.01" ; colour "10" ; gene "SPCP31B10.09 ||| SPCC962.01" ; Alias "SPCP31B10.09" ; db_xref "SPD:30/30H05" ; synonym "SPCP31B10.09" ; GO "GO:0016020; membrane
GO:0008289; lipid binding
GO:0005543; phospholipid binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C2 domain; date=19700101 ||| term=orthologous to S. cerevisiae YML072C and YNL087W and YOR086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "SPCP31B10.09" ; product "C2 domain protein" ;
chromosome3 GeneDB mRNA 2047605 2049147 . + . mRNA SPCC1739.10 ; systematic_id "SPCC1739.10" ; colour "10" ; gene "SPCC1739.10 ||| mug33" ; Alias "mug33" ; db_xref "SPD:15/15A08" ; GO "GO:0005886; plasma membrane
GO:0007126; ascospore formation
GO:0007127; meiosis I" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOL019W and YFR012W and YMR063W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, sporulation defects, azygotic asci; db_xref=PMID:20404563; cv=phenotype; date=20100222 ||| term=phenotype, sporulation defects; db_xref=PMID:20404563; cv=phenotype; date=20100222" ; primary_name "mug33" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 2370832 2371916 . + . mRNA SPCC70.10 ; systematic_id "SPCC70.10" ; colour "8" ; gene "SPCC70.10" ; note "confirmed by mRNA" ; db_xref "SPD:04/04C08" ; GO "GO:0009986; cell surface" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 618894 623127 . + . mRNA SPCC1183.11 ; systematic_id "SPCC1183.11" ; colour "7" ; gene "SPCC1183.11 ||| SPCC31H12.01" ; db_xref "SPD:29/29H05" ; synonym "SPCC31H12.01" ; GO "GO:0008381; mechanically-gated ion channel activity
GO:0034220; ion transmembrane transport
GO:0016021; integral to membrane
GO:0005509; calcium ion binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; product "MS ion channel protein 1 (predicted)" ;
chromosome3 GeneDB mRNA 462720 464714 . + . mRNA SPCC4G3.05c ; systematic_id "SPCC4G3.05c" ; colour "2" ; gene "mus81 ||| SPCC4G3.05c" ; Alias "mus81" ; db_xref "SPD:35/35F02" ; synonym "slx3" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=low_penetrance|deletion; cv=phenotype; db_xref=PMID:17307401; date=20091215 ||| term=phenotype, DNA damage checkpoint defects, S-phase; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=human MUS81 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YDR386W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0008821; crossover junction endodeoxyribonuclease activity
GO:0006301; postreplication repair
GO:0007131; meiotic recombination
GO:0005515; protein binding
GO:0048476; Holliday junction resolvase complex
GO:0005634; nucleus
GO:0031297; collapsed replication fork processing
GO:0000709; meiotic joint molecule formation
GO:0000711; meiotic DNA repair synthesis
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0031573; intra-S DNA damage checkpoint" ; primary_name "mus81" ; product "Holliday junction resolvase subunit Mus81" ;
chromosome3 GeneDB mRNA 2163205 2164165 . + . mRNA SPCC1620.10 ; systematic_id "SPCC1620.10" ; colour "2" ; gene "cwf26 ||| SPCC1620.10" ; Alias "cwf26" ; db_xref "SPD:12/12G07" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL174W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf26" ; product "complexed with Cdc5 protein Cwf26" ;
chromosome3 GeneDB mRNA 190605 192090 . + . mRNA SPCC1235.07 ; systematic_id "SPCC1235.07" ; colour "2" ; db_xref "SPD:43/43G07" ; Alias "fta7" ; synonym "sma7 ||| cnl3" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106 ||| term=species distribution, conserved in Fungi; date=20100723 ||| term=species distribution, conserved in Eukaryotes; date=20100723 ||| term=species distribution, conserved in Metazoa; date=20100723 ||| term=species distribution, conserved in Eukaryotes only; date=20100723 ||| term=species distribution, conserved in Vertebrates; date=20100723 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100723" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000776; kinetochore
GO:0000779; condensed chromosome, pericentric region" ; primary_name "fta7" ; product "CENP-Q humolog Fta7" ;
chromosome3 GeneDB mRNA 2236152 2237138 . - . mRNA SPCC1919.13c ; db_xref "SPD:13/13H07" ; systematic_id "SPCC1919.13c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL096C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1919.13c" ; product "ribosome biogenesis protein (predicted)" ;
chromosome3 GeneDB mRNA 450209 451666 . - . mRNA SPCC4G3.11 ; systematic_id "SPCC4G3.11" ; colour "10" ; gene "SPCC4G3.11 ||| mug154" ; db_xref "SPD:13/13D04" ; Alias "mug154" ; controlled_curation "term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL089W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug154" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 189121 190221 . + . mRNA SPCC1235.06 ; systematic_id "SPCC1235.06" ; colour "2" ; gene "sif1 ||| SPCC1235.06" ; Alias "sif1" ; db_xref "SPD:10/10H02" ; GO "; spindle pole body
GO:0005515; protein binding
GO:0006890; retrograde vesicle-mediated transport, Golgi to ER
GO:0043529; GET complex
GO:0045048; protein insertion into ER membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER083C; date=20080409 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "sif1" ; product "Sad1 interacting factor 1" ;
chromosome3 GeneDB mRNA 1669944 1671551 . - . mRNA SPCC417.02 ; systematic_id "SPCC417.02" ; colour "2" ; gene "dad5 ||| hsk3 ||| hos3 ||| SPCC417.02" ; Alias "dad5" ; db_xref "SPD:01/01C11" ; synonym "hsk3 ||| hos3" ; GO "GO:0071470; cellular response to osmotic stress
GO:0042729; DASH complex
GO:0031134; sister chromatid biorientation
GO:0007052; mitotic spindle organization and biogenesis" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, High Osmolarity Sensitive; cv=name_description; date=20060207 ||| term=orthologous to S. cerevisiae YKL138C-A; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "dad5" ; product "DASH complex subunit Dad5" ;
chromosome3 GeneDB mRNA 1641021 1641180 . + . mRNA SPCC663.04 ; systematic_id "SPCC663.04" ; colour "2" ; gene "rpl39 ||| SPCC663.04" ; Alias "rpl39" ; db_xref "SPD:01/01A05" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL189W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl39" ; product "60S ribosomal protein L39" ;
chromosome3 GeneDB mRNA 2072907 2074940 . + . mRNA SPCPB1C11.02 ; db_xref "SPD:50/50G10" ; systematic_id "SPCPB1C11.02" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL268W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPCPB1C11.02" ; product "amino acid permease (predicted)" ;
chromosome3 GeneDB mRNA 1406677 1407099 . + . mRNA SPCC622.04 ; db_xref "SPD:03/03E01" ; systematic_id "SPCC622.04" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC622.04" ; product "dubious" ;
chromosome3 GeneDB mRNA 52887 54151 . - . mRNA SPCC757.05c ; db_xref "SPD:19/19C04" ; systematic_id "SPCC757.05c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=20100309 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0008237; peptidase activity" ; gene "SPCC757.05c" ; product "peptidase family M20 protein" ;
chromosome3 GeneDB mRNA 468839 469688 . - . mRNA SPCC4G3.02 ; systematic_id "SPCC4G3.02" ; colour "2" ; gene "aph1 ||| SPCC4G3.02" ; Alias "aph1" ; db_xref "SPD:11/11B07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060724 ||| term=HIT family; date=19700101 ||| term=orthologous to S. cerevisiae YDR305C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0005634; nucleus
GO:0004081; bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity
GO:0006154; adenosine catabolism" ; primary_name "aph1" ; product "bis(5'-nucleosidyl)-tetraphosphatase" ; EC_number "3.6.1.17" ;
chromosome3 GeneDB mRNA 2286857 2289278 . - . mRNA SPCC965.04c ; db_xref "SPD:46/46G05" ; systematic_id "SPCC965.04c" ; colour "7" ; GO "GO:0004176; ATP-dependent peptidase activity
GO:0007005; mitochondrion organization and biogenesis
GO:0005743; mitochondrial inner membrane
GO:0006515; misfolded or incompletely synthesized protein catabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YPR024W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC965.04c" ; product "mitochondrial inner membrane i-AAA protease complex subunit Yme1 (predicted)" ;
chromosome3 GeneDB mRNA 2212718 2218217 . + . mRNA SPCC1919.05 ; db_xref "SPD:30/30G01" ; systematic_id "SPCC1919.05" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0006402; mRNA catabolism
GO:0005737; cytoplasm
GO:0017148; negative regulation of translation
GO:0055087; Ski complex" ; gene "SPCC1919.05 ||| ski3" ; product "Ski complex TPR repeat subunit Ski3 (predicted)" ; reserved_name "ski3" ;
chromosome3 GeneDB mRNA 1345394 1347127 . - . mRNA SPCC338.16 ; systematic_id "SPCC338.16" ; colour "2" ; gene "pof3 ||| SPCC338.16" ; Alias "pof3" ; db_xref "SPD:35/35G10" ; GO "GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0000723; telomere maintenance
GO:0006511; ubiquitin-dependent protein catabolic process
GO:0010389; regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR080W; date=19700101 ||| term=human STIP1 ortholog; date=20080402 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11809834; date=20100708 ||| term=phenotype, sensitive to UV; qualifier=deletion; db_xref=PMID:11809834; date=20100708 ||| term=phenotype, chromosome segregation defects, lagging chromosomes; qualifier=deletion; db_xref=PMID:11809834; date=20100708 ||| term=phenotype, chromosome segregation defects, chromosome loss; qualifier=deletion; db_xref=PMID:11809834; date=20100708" ; primary_name "pof3" ; product "F-box protein Pof3" ;
chromosome3 GeneDB mRNA 50358 52722 . + . mRNA SPCC757.04 ; db_xref "SPD:46/46F06" ; systematic_id "SPCC757.04" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR337W and YLR098C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC757.04" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB mRNA 1776511 1777127 . - . mRNA SPCC1442.05c ; db_xref "SPD:05/05D06" ; systematic_id "SPCC1442.05c" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR235C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1442.05c" ; product "mitochondrial protein" ;
chromosome3 GeneDB mRNA 1792660 1793286 . - . mRNA SPCC1442.14c ; db_xref "SPD:03/03A12" ; systematic_id "SPCC1442.14c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0009117; nucleotide metabolism
GO:0000166; nucleotide binding
GO:0016787; hydrolase activity
GO:0043530; adenosine 5'-monophosphoramidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HIT family; date=19700101 ||| term=orthologous to S. cerevisiae YDL125C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC1442.14c" ; product "adenosine 5'-monophosphoramidase (predicted)" ;
chromosome3 GeneDB mRNA 1779535 1780693 . - . mRNA SPCC1442.07c ; db_xref "SPD:11/11B05" ; systematic_id "SPCC1442.07c" ; colour "7" ; GO "GO:0016925; protein sumoylation
GO:0006974; response to DNA damage stimulus
GO:0008270; zinc ion binding
GO:0008237; metallopeptidase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe SPAC521.02 and S. cerevisiae YHR134W, but has an additional N- terminal ubiquitin family domain; date=20060106 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20070523 ||| term=ubiquitin family protein; date=19700101" ; gene "SPCC1442.07c" ; product "ubiquitin/metalloprotease fusion protein (predicted)" ;
chromosome3 GeneDB mRNA 627062 627804 . - . mRNA SPCC31H12.04c ; systematic_id "SPCC31H12.04c" ; colour "2" ; gene "rpl1202 ||| rpl12 ||| rpl12-2 ||| SPCC31H12.04c" ; Alias "rpl1202" ; db_xref "SPD:06/06E04" ; synonym "rpl12-2 ||| rpl12" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000027; ribosomal large subunit assembly and maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL054C and YDR418W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=target of Set11; db_xref=PMID:18195021; date=20100629 ||| term=modification, methylated; cv=pt_mod; db_xref=PMID:18195021; date=20100629" ; primary_name "rpl1202" ; product "60S ribosomal protein L12.1/L12A" ;
chromosome3 GeneDB mRNA 1158148 1160394 . + . mRNA SPCC4B3.10c ; systematic_id "SPCC4B3.10c" ; colour "2" ; gene "ipk1 ||| SPCC4B3.10c" ; Alias "ipk1" ; db_xref "SPD:27/27C04" ; GO "GO:0005634; nucleus
GO:0004428; inositol or phosphatidylinositol kinase activity
GO:0032958; inositol phosphate biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR315C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110" ; primary_name "ipk1" ; product "inositol 1,3,4,5,6-pentakisphosphate (IP5) kinase" ;
chromosome3 GeneDB mRNA 972824 973972 . + . mRNA SPCC1795.12c ; db_xref "SPD:02/02A05" ; systematic_id "SPCC1795.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPCC1795.12c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 146165 148149 . - . mRNA SPCC320.10 ; systematic_id "SPCC320.10" ; colour "7" ; gene "srp72 ||| SPCC320.10" ; Alias "srp72" ; db_xref "SPD:26/26G04" ; GO "GO:0006614; SRP-dependent cotranslational protein targeting to membrane
GO:0005048; signal sequence binding
GO:0005786; signal recognition particle (sensu Eukaryota)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YPL210C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "srp72" ; product "signal recognition particle subunit Srp72 (predicted)" ;
chromosome3 GeneDB mRNA 1895035 1895971 . + . mRNA SPCC737.05 ; systematic_id "SPCC737.05" ; colour "7" ; gene "SPCC737.05" ; note "There may be problems with this gene prediction, it appears to be N terminal truncated in comparision to the S. cerevisiae orthologs, although is proximal to N terminal LTR so may have been N-terminally truncated deleted" ; db_xref "SPD:10/10A10" ; GO "GO:0005778; peroxisomal membrane
GO:0007031; peroxisome organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHR150W and YDR479C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "peroxin Pex28/29 (predicted)" ;
chromosome3 GeneDB mRNA 1027542 1029192 . - . mRNA SPCC825.03c ; systematic_id "SPCC825.03c" ; colour "2" ; gene "psy1 ||| sso1 ||| SPCC825.03c" ; Alias "psy1" ; db_xref "SPD:11/11C10" ; synonym "sso1" ; GO "GO:0005484; SNAP receptor activity
GO:0030437; sporulation (sensu Fungi)
GO:0005628; prospore membrane
GO:0005886; plasma membrane
GO:0016192; vesicle-mediated transport
GO:0032120; ascospore-type prospore membrane assembly" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SNARE; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11739793; date=19700101 ||| term=gene expression, expressed during sporulation; cv=gene_ex; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL232W and YMR183C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "psy1" ; product "SNARE Psy1" ;
chromosome3 GeneDB mRNA 2092100 2093637 . - . mRNA SPCC576.06c ; db_xref "KEGG:MAP00400; ||| KEGG:MAP00970; ||| SPD:23/23B09" ; systematic_id "SPCC576.06c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL097W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004831; tyrosine-tRNA ligase activity
GO:0006437; tyrosyl-tRNA aminoacylation" ; gene "SPCC576.06c" ; product "mitochondrial tyrosine-tRNA ligase (predicted)" ; EC_number "6.1.1.1" ;
chromosome3 GeneDB mRNA 2388388 2391302 . - . mRNA SPCC1827.07c ; systematic_id "SPCC1827.07c" ; colour "7" ; gene "SPCP1E11.01c ||| SPCC1827.07c" ; Alias "SPCP1E11.01c" ; db_xref "SPD:28/28G06" ; synonym "SPCP1E11.01c" ; GO "GO:0005886; plasma membrane
GO:0007165; signal transduction
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SPX domain protein; date=19700101 ||| term=EXS family protein; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPCP1E11.01c" ; product "SPX/EXS domain protein (predicted)" ;
chromosome3 GeneDB mRNA 219185 220283 . - . mRNA SPCC548.02c ; systematic_id "SPCC548.02c" ; colour "13" ; obsolete_name "wtf11-pseudo" ; Alias "wtf3" ; synonym "meu9 ||| SPCC548.02" ; pseudo "_no_value" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101" ; primary_name "wtf3" ; product "pseudogene wtf element Wtf3 (no methionine)" ;
chromosome3 GeneDB mRNA 2224882 2229930 . - . mRNA SPCC1919.10c ; systematic_id "SPCC1919.10c" ; colour "2" ; gene "myo52 ||| SPCC1919.10c" ; Alias "myo52" ; db_xref "SPD:31/31A01" ; GO "GO:0033205; cell cycle cytokinesis
GO:0007163; establishment and/or maintenance of cell polarity
GO:0051285; cell cortex of cell tip
GO:0031097; medial ring
GO:0000146; microfilament motor activity
GO:0034613; cellular protein localization" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=IQ domain; date=19700101 ||| term=orthologous to S. cerevisiae YAL029C and YOR326W; date=20070726 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "myo52" ; product "myosin type V" ;
chromosome3 GeneDB mRNA 837517 839701 . + . mRNA SPCC63.03 ; db_xref "SPD:27/27H05" ; systematic_id "SPCC63.03" ; colour "10" ; GO "GO:0030544; Hsp70 protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; gene "SPCC63.03" ; product "DNAJ domain protein, DNAJC11 family" ;
chromosome3 GeneDB mRNA 1754236 1757316 . + . mRNA SPCC1450.12 ; db_xref "SPD:47/47E02" ; systematic_id "SPCC1450.12" ; colour "10" ; GO "GO:0035091; phosphoinositide binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YPR097W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1450.12" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 525361 525831 . + . mRNA SPCP31B10.02 ; systematic_id "SPCP31B10.02" ; colour "10" ; gene "SPCP31B10.02" ; note "conserved VP.KP.EP.NCC.SGC..CVW.Y..DL" ; db_xref "SPD:03/03F03" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL107W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "mitochondrial conserved eukaryotic protein (predicted)" ;
chromosome3 GeneDB mRNA 1321392 1322155 . + . mRNA SPCC1322.15 ; systematic_id "SPCC1322.15" ; colour "2" ; gene "rpl3402 ||| rpl34-2 ||| rpl34 ||| SPCC1322.15" ; Alias "rpl3402" ; db_xref "SPD:01/01H10" ; synonym "rpl34 ||| rpl34-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER056C-A and YIL052C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl3402" ; product "60S ribosomal protein L34" ;
chromosome3 GeneDB mRNA 1047616 1049981 . + . mRNA SPCC1259.08 ; db_xref "SPD:18/18H02" ; systematic_id "SPCC1259.08" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1259.08" ; product "conserved fungal protein, DUF2457 family" ; note "N-terminal may need truncating" ;
chromosome3 GeneDB mRNA 1587696 1588649 . + . mRNA SPCC162.01c ; db_xref "SPD:08/08H08" ; systematic_id "SPCC162.01c" ; colour "7" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human RY-1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC162.01c" ; product "U4/U6 x U5 tri-snRNP complex subunit (predicted)" ;
chromosome3 GeneDB mRNA 2341559 2342383 . - . mRNA SPCC1494.08c ; db_xref "SPD:10/10F11" ; systematic_id "SPCC1494.08c" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL086C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC1494.08c" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 141657 142975 . + . mRNA SPCC320.13c ; systematic_id "SPCC320.13c" ; colour "2" ; obsolete_name "SPCC320.12c" ; db_xref "SPD:18/18C05" ; Alias "ark1" ; synonym "aim1 ||| SPCC330.16" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11792803; date=19700101 ||| term=phenotype, sensitive to latrunculin A; allele=ark1-T7; cv=phenotype; db_xref=PMID:19570910; date=20090707 ||| term=phenotype, cut; db_xref=PMID:11950927; date=20100705 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:11792803; date=20100709 ||| term=phenotype, chromosome condensation defects; qualifier=deletion; db_xref=PMID:11792803; date=20100709 ||| term=phenotype, spindle defects; qualifier=deletion|during_mitosis; db_xref=PMID:11792803; date=20100709 ||| term=phenotype, kinetochore defects; qualifier=deletion; db_xref=PMID:11792803; date=20100709 ||| term=disease associated, aneuploidy; date=20060920 ||| term=orthologous to S. cerevisiae YPL209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:12676091; date=20030801 ||| term=localization, location of Cdc14 phosphatase, Clp1 to contractile ring; db_xref=PMID:19570910; date=20090707 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=gene expression, transcriptionally regulated by Sep1; cv=gene_ex; date=19700101 ||| term=target is Hht1; qualifier=phosphorylates; db_xref=PMID:11792803; date=20100820 ||| term=target is Hht2; qualifier=phosphorylates; db_xref=PMID:11792803; date=20100820 ||| term=target is Hht3; qualifier=phosphorylates; db_xref=PMID:11792803; date=20100820" ; GO "GO:0032133; chromosome passenger complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005634; nucleus
GO:0051233; spindle midzone
GO:0043987; histone H3 S10 phosphorylation
GO:0005515; protein binding
GO:0005515; protein binding
; protein binding
; protein binding
; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0051315; attachment of spindle microtubules to kinetochore during mitosis
GO:0030261; chromosome condensation
GO:0034503; condensin localization to nucleolar rDNA repeats
GO:0033205; cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0007094; mitotic spindle checkpoint
GO:0034501; protein localization to kinetochore
GO:0031134; sister chromatid biorientation" ; primary_name "ark1" ; product "aurora-B kinase Ark1" ;
chromosome3 GeneDB mRNA 1741588 1743459 . - . mRNA SPCC1450.09c ; db_xref "SPD:27/27D10" ; systematic_id "SPCC1450.09c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR008C and YMR006C and YOL011W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004620; phospholipase activity
GO:0046475; glycerophospholipid catabolism
GO:0009277; cell wall (sensu Fungi)
GO:0009897; external side of plasma membrane
GO:0005576; extracellular region" ; gene "SPCC1450.09c" ; product "phospholipase (predicted)" ; EC_number "3.1.1.5" ;
chromosome3 GeneDB mRNA 597496 599237 . - . mRNA SPCC1183.04c ; systematic_id "SPCC1183.04c" ; colour "2" ; gene "pet127 ||| SPCC1183.04c" ; Alias "pet127" ; db_xref "SPD:45/45D07" ; GO "GO:0005740; mitochondrial envelope
GO:0006396; RNA processing
GO:0009061; anaerobic respiration
GO:0043488; regulation of mRNA stability
GO:0043488; regulation of mRNA stability
GO:0043488; regulation of mRNA stability
GO:0000962; positive regulation of mitochondrial RNA catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070522 ||| term=orthologous to S. cerevisiae YOR017W; date=19700101 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820 ||| term=complementation, functionally complements S. cerevisiae PET127; db_xref=PMID:17292401; date=20101012" ; primary_name "pet127" ; product "mitochondrial RNA metabolism pathway protein Pet127" ;
chromosome3 GeneDB mRNA 571591 574561 . - . mRNA SPCC1672.06c ; systematic_id "SPCC1672.06c" ; colour "2" ; gene "asp1 ||| SPCC1672.06c ||| vip1" ; Alias "asp1" ; db_xref "SPD:47/47B11" ; synonym "vip1" ; GO "GO:0005737; cytoplasm
GO:0000828; inositol heptakisphosphate kinase activity
GO:0033187; inositol hexakisphosphate 4-kinase or 6-kinase activity
GO:0030866; cortical actin cytoskeleton organization and biogenesis
GO:0030950; establishment and/or maintenance of actin cytoskeleton polarity
GO:0032958; inositol phosphate biosynthetic process
GO:0050848; regulation of calcium-mediated signaling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, rounded cells; db_xref=PMID:10388810; qualifier=deletion|at_high_temperature; cv=phenotype; date=20060601 ||| term=phenotype, growth defect, slow growth at high temperatures; db_xref=PMID:10388810; qualifier=deletion; cv=phenotype; date=20060601 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:10388810; date=19700101 ||| term=orthologous to S. cerevisiae YLR410W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "asp1" ; product "inositol hexakisphosphate kinase/inositol pyrophosphate synthase (predicted)" ;
chromosome3 GeneDB mRNA 2332780 2334926 . - . mRNA SPCC1494.06c ; db_xref "SPD:45/45H05" ; systematic_id "SPCC1494.06c" ; colour "7" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0006364; rRNA processing
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YLR276C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1494.06c" ; product "ATP-dependent RNA helicase Dbp9 (predicted)" ;
chromosome3 GeneDB mRNA 1040133 1041016 . + . mRNA SPCC1259.03 ; systematic_id "SPCC1259.03" ; colour "2" ; gene "rpa12 ||| SPCC1259.03" ; Alias "rpa12" ; db_xref "SPD:42/42D06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11254133; date=19700101 ||| term=orthologous to S. cerevisiae YJR063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0006360; transcription from RNA polymerase I promoter
GO:0006353; transcription termination
GO:0005736; DNA-directed RNA polymerase I complex" ; primary_name "rpa12" ; product "DNA-directed RNA polymerase complex I subunit Rpa12" ; EC_number "2.7.7.6" ;
chromosome3 GeneDB mRNA 1422550 1425846 . - . mRNA SPCC622.13c ; systematic_id "SPCC622.13c" ; colour "2" ; gene "SPCC622.13c ||| tti1" ; Alias "tti1" ; db_xref "SPD:48/48B09" ; GO "GO:0005515; protein binding
GO:0070209; ASTRA complex
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL033W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=HEAT repeat; date=20091118" ; primary_name "tti1" ; product "Tel Two Interacting protein 1" ;
chromosome3 GeneDB mRNA 1152150 1153911 . - . mRNA SPCC4B3.13 ; db_xref "SPD:25/25H10" ; systematic_id "SPCC4B3.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR338C and YHR032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; gene "SPCC4B3.13" ; product "MatE family transporter (predicted)" ;
chromosome3 GeneDB mRNA 883392 885173 . + . mRNA SPCC16A11.08 ; systematic_id "SPCC16A11.08" ; colour "7" ; gene "atg20 ||| SPCC16A11.08" ; Alias "atg20" ; db_xref "SPD:36/36C11" ; GO "GO:0006914; autophagy
GO:0042147; retrograde transport, endosome to Golgi
GO:0005768; endosome
GO:0032266; phosphatidylinositol 3-phosphate binding
GO:0032258; CVT pathway
GO:0034498; early endosome to Golgi transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL113C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "atg20" ; product "sorting nexin Atg20 (predicted)" ;
chromosome3 GeneDB mRNA 358025 361107 . - . mRNA SPCC594.02c ; db_xref "SPD:23/23F10" ; systematic_id "SPCC594.02c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL026C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC594.02c" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 305778 308635 . - . mRNA SPCC553.02 ; db_xref "SPD:29/29A04" ; systematic_id "SPCC553.02" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0003952; NAD+ synthase (glutamine-hydrolyzing) activity
GO:0009435; NAD biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016810; hydrolase activity, acting on carbon- nitrogen (but not peptide) bonds
GO:0034641; cellular ntirogen compound metabolic process
GO:0005524; ATP binding" ; gene "SPCC553.02" ; product "glutamine-dependent NAD(+) synthetase (predicted)" ; EC_number "6.3.5.1 ||| 3.5.-.-" ;
chromosome3 GeneDB mRNA 553165 553716 . + . mRNA SPCC962.04 ; systematic_id "SPCC962.04" ; colour "7" ; gene "rps1201 ||| rps12-1 ||| SPCC962.04 ||| rps12" ; Alias "rps1201" ; db_xref "SPD:05/05B09" ; synonym "rps12-1 ||| rps12" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR369C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1201" ; product "40S ribosomal protein S12 (predicted)" ;
chromosome3 GeneDB mRNA 2420452 2422268 . - . mRNA SPCC569.06 ; db_xref "SPD:23/23B10" ; systematic_id "SPCC569.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPCC569.06" ; product "S. pombe specific multicopy membrane protein family 1" ;
chromosome3 GeneDB mRNA 297140 298258 . - . mRNA SPCC553.05c ; systematic_id "SPCC553.05c" ; colour "13" ; gene "wtf6 ||| SPCC553.05c" ; Alias "wtf6" ; db_xref "SPD:51/51D01" ; obsolete_name "wtf2-pseudo" ; synonym "SPCC553.05" ; pseudo "_no_value" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf6" ; product "pseudogene wtf element Wtf6" ;
chromosome3 GeneDB mRNA 2202815 2203918 . - . mRNA SPCC830.11c ; db_xref "SPD:07/07A09" ; systematic_id "SPCC830.11c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005669; transcription factor TFIID complex
GO:0017111; nucleoside-triphosphatase activity
GO:0030490; processing of 20S pre-rRNA" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YDL166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC830.11c" ; product "transcription factor TFIID complex nucleoside- triphosphatase (predicted)" ;
chromosome3 GeneDB mRNA 1731409 1732348 . + . mRNA SPCC1450.03 ; db_xref "SPD:08/08F01" ; systematic_id "SPCC1450.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=related to S. pombe SPAC20H4.01; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "7" ; gene "SPCC1450.03" ; product "ribonucleoprotein (RNP) complex (predicted)" ;
chromosome3 GeneDB mRNA 978613 980178 . - . mRNA SPCC1795.09 ; systematic_id "SPCC1795.09" ; colour "2" ; gene "yps1 ||| SPCC1795.09" ; Alias "yps1" ; db_xref "SPD:25/25C08" ; GO "GO:0005618; cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=orthologous to S. cerevisiae YLR120C and YDR144C and YLR121C and YIR039C and YDR349C; date=19700101 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=modification, proteolytic cleavage; cv=pt_mod; qualifier=predicted; residue=SER17|ARG45; db_xref=PMID:11115118; date=20091119 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=protein sequence feature, cleavage site; cv=sequence_feature; qualifier=predicted; residue=SER17|ARG45; db_xref=PMID:11115118; date=20091119 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "yps1" ; product "aspartic protease, yapsin Yps1" ;
chromosome3 GeneDB mRNA 845924 847200 . + . mRNA SPCC63.06 ; db_xref "SPD:14/14E10" ; systematic_id "SPCC63.06" ; colour "10" ; GO "GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YNL035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human WDR89 ortholog; date=20100728" ; gene "SPCC63.06" ; product "human WDR89 family WD repeat protein" ;
chromosome3 GeneDB mRNA 2415061 2417262 . - . mRNA SPCC569.07 ; db_xref "SPD:44/44E06" ; systematic_id "SPCC569.07" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0009072; aromatic amino acid family metabolism
GO:0008793; aromatic-amino-acid transaminase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL202W and YHR137W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC569.07" ; product "aromatic aminotransferase (predicted)" ;
chromosome3 GeneDB mRNA 1857343 1858233 . - . mRNA SPCC1223.09 ; db_xref "SPD:12/12B05" ; systematic_id "SPCC1223.09" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004846; urate oxidase activity" ; gene "SPCC1223.09" ; product "uricase (predicted)" ; EC_number "1.7.3.3" ;
chromosome3 GeneDB mRNA 2172510 2178068 . - . mRNA SPCC1620.14c ; systematic_id "SPCC1620.14c" ; colour "2" ; gene "snf22 ||| SPCC1620.14c" ; Alias "snf22" ; db_xref "SPD:31/31B02" ; synonym "SPCC830.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=phenotype, resistance to 2-DOG; qualifier=deletion; cv=phenotype; db_xref=PMID:18622392; date=20080729 ||| term=AT hook protein; date=19700101 ||| term=bromodomain; date=19700101 ||| term=orthologous to S. cerevisiae YOR290C and YIL126W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human SMARCA4 ortholog; date=20100218 ||| term=disease associated, cancer; date=20100218 ||| term=gene expression, transcriptionally regulates genes involved in glucose uptake; qualifier=represses; db_xref=PMID:18622392; cv=gene_ex; date=20080729 ||| term=gene expression, transcriptionally regulates genes involved in iron uptake; qualifier=represses; db_xref=PMID:18622392; cv=gene_ex; date=20080729 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:18622392; date=20090110" ; GO "GO:0016514; SWI/SNF complex
GO:0016585; chromatin remodeling complex
GO:0000790; nuclear chromatin
GO:0010553; negative regulation of specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0005524; ATP binding
GO:0004003; ATP dependent DNA helicase activity
GO:0003677; DNA binding
GO:0016251; general RNA polymerase II transcription factor activity
GO:0043044; ATP-dependent chromatin remodeling
GO:0007131; meiotic recombination
GO:0006338; chromatin remodeling" ; primary_name "snf22" ; product "ATP-dependent DNA helicase Snf22" ;
chromosome3 GeneDB mRNA 441550 442914 . + . mRNA SPCC4G3.15c ; systematic_id "SPCC4G3.15c" ; colour "7" ; gene "SPCC4G3.15c ||| not2" ; Alias "not2" ; db_xref "SPD:42/42G05" ; GO "GO:0000175; 3'-5'-exoribonuclease activity
GO:0030015; CCR4-NOT core complex
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0000289; poly(A) tail shortening
GO:0006354; RNA elongation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL165W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; primary_name "not2" ; product "CCR4-Not complex subunit Not2 (predicted)" ;
chromosome3 GeneDB mRNA 634292 636930 . + . mRNA SPCC31H12.07 ; systematic_id "SPCC31H12.07" ; colour "7" ; db_xref "SPD:28/28G09" ; Alias "sec231" ; synonym "sec23a ||| SPCC5E4.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR181C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0005096; GTPase activator activity
GO:0008270; zinc ion binding
GO:0006886; intracellular protein transport
GO:0030127; COPII vesicle coat
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030433; ER-associated protein catabolism" ; primary_name "sec231" ; product "COPII cargo receptor subunit Sec23a (predicted)" ;
chromosome3 GeneDB mRNA 1970883 1972643 . + . mRNA SPCC18.08 ; systematic_id "SPCC18.08" ; colour "7" ; gene "SPCC18.08" ; note "YNL073W is not the top Blast hit for SPCC18.08 (top hit YDR037W). However, the domain structure of SPCC18.08 corresponds better to YNL073W than YDR037W" ; db_xref "KEGG:MAP00300; ||| KEGG:MAP00970; ||| SPD:25/25F05" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004824; lysine-tRNA ligase activity
GO:0003676; nucleic acid binding
GO:0006430; lysyl-tRNA aminoacylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL073W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; product "mitochondrial lysine-tRNA ligase (predicted)" ;
chromosome3 GeneDB mRNA 1847514 1847853 . - . mRNA SPCC1223.05c ; systematic_id "SPCC1223.05c" ; colour "7" ; gene "rpl3702 ||| rpl37-2 ||| rpl37 ||| SPCC1223.05c" ; Alias "rpl3702" ; db_xref "SPD:01/01H11" ; synonym "rpl37-2 ||| rpl37" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0019843; rRNA binding
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR185W and YDR500C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl3702" ; product "60S ribosomal protein L37 (predicted)" ;
chromosome3 GeneDB mRNA 1719325 1720014 . - . mRNA SPCC191.09c ; systematic_id "SPCC191.09c" ; colour "2" ; gene "gst1 ||| SPCC191.09c" ; Alias "gst1" ; db_xref "SPD:08/08A06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL229C; date=19700101 ||| term=gene expression, transcriptionally regulated by Pap1; db_xref=PMID:15650694; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=thioredoxin family; date=20081111" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004364; glutathione transferase activity
GO:0046982; protein heterodimerization activity
GO:0042803; protein homodimerization activity
GO:0042493; response to drug
GO:0034599; cellular response to oxidative stress" ; primary_name "gst1" ; product "glutathione S-transferase Gst1" ; EC_number "2.5.1.18" ;
chromosome3 GeneDB mRNA 1296958 1300540 . + . mRNA SPCC1322.06 ; systematic_id "SPCC1322.06" ; colour "2" ; gene "kap113 ||| SPCC1322.06" ; Alias "kap113" ; db_xref "SPD:48/48B01" ; GO "; nuclear pore
GO:0005634; nucleus
GO:0006406; mRNA export from nucleus
GO:0007094; mitotic spindle checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=orthologous to S. cerevisiae YPL125W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "kap113" ; product "karyopherin Kap113" ;
chromosome3 GeneDB mRNA 2135880 2136873 . - . mRNA SPCC126.11c ; db_xref "SPD:07/07E12" ; systematic_id "SPCC126.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC126.11c" ; product "RNA-binding protein, rrm type" ;
chromosome3 GeneDB mRNA 2350436 2352580 . - . mRNA SPCC70.03c ; db_xref "KEGG:MAP00330; ||| SPD:23/23H05" ; systematic_id "SPCC70.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR142W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006562; proline catabolism
GO:0006537; glutamate biosynthesis
GO:0004657; proline dehydrogenase activity
GO:0005759; mitochondrial matrix" ; gene "SPCC70.03c" ; product "proline dehydrogenase (predicted)" ; EC_number "1.5.99.8" ;
chromosome3 GeneDB mRNA 82697 84840 . + . mRNA SPCC613.02 ; db_xref "SPD:24/24B08" ; systematic_id "SPCC613.02" ; colour "7" ; GO "GO:0016021; integral to membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPCC613.01 and SPCC330.07c and SPCC757.11c (paralogs); date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC613.02" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 1768993 1771067 . + . mRNA SPCC1442.02 ; systematic_id "SPCC1442.02" ; colour "10" ; gene "SPCC1450.18 ||| SPCC1442.02" ; Alias "SPCC1450.18" ; db_xref "SPD:36/36A01" ; synonym "SPCC1450.18" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL060W and YBR216C; attribution=pers. comm. E. Hartsuiker YGL060w; date=20080116 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20080202" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0007346; regulation of mitotic cell cycle" ; primary_name "SPCC1450.18" ; product "central kinetochore associated family protein (predicted)" ;
chromosome3 GeneDB mRNA 1797992 1799933 . + . mRNA SPCC285.03 ; db_xref "SPD:36/36F06" ; systematic_id "SPCC285.03" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0004004; ATP-dependent RNA helicase activity
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YNR038W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC285.03" ; product "ATP-dependent RNA helicase Dbp6 (predicted)" ;
chromosome3 GeneDB mRNA 1173490 1175650 . + . mRNA SPCC4B3.03c ; db_xref "SPD:46/46D05" ; systematic_id "SPCC4B3.03c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL060C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0007005; mitochondrion organization
GO:0030026; cellular manganese ion homeostasis" ; gene "SPCC4B3.03c" ; product "mitochondrial morphology protein (predicted)" ;
chromosome3 GeneDB mRNA 1871388 1875620 . + . mRNA SPCC1223.13 ; systematic_id "SPCC1223.13" ; colour "2" ; gene "SPCC1223.13" ; Alias "cbf12" ; db_xref "SPD:47/47D06" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016563; transcriptional activator activity
GO:0022409; positive regulation of cell-cell adhesion
GO:0010811; positive regulation of cell-substrate adhesion
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0032955; regulation of barrier septum formation
GO:0010590; regulation of cell separation during cytokinesis
GO:0051783; regulation of nuclear division" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe SPCC736.08; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, C promoter element Binding Factor; cv=name_description; date=20070712 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, cytokinesis defects; cv=phenotype; qualifier=overexpression; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, adhesion defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19101542; date=20090108 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:19101542; date=20090108 ||| term=gene expression, expressed during stationary phase; cv=gene_ex; db_xref=PMID:19101542; date=20090108 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; residue=S264; date=20100308" ; primary_name "cbf12" ; product "CBF1/Su(H)/LAG-1 family transcription factor Cbf12" ;
chromosome3 GeneDB mRNA 1880992 1882276 . - . mRNA SPCC297.04c ; systematic_id "SPCC297.04c" ; colour "7" ; gene "set7 ||| SPCC297.04c" ; Alias "set7" ; db_xref "SPD:09/09C11" ; GO "GO:0018024; histone-lysine N-methyltransferase activity
GO:0016571; histone methylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20071106 ||| term=similar to U. maydis UM00758.01; date=20071106 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "set7" ; product "histone lysine methyltransferase Set7 (predicted)" ;
chromosome3 GeneDB mRNA 239781 241208 . - . mRNA SPCC794.01c ; db_xref "KEGG:MAP00030; ||| KEGG:MAP00480; ||| SPD:22/22A02" ; systematic_id "SPCC794.01c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, chronic non- spherocytic hemolytic anemia; date=20061122 ||| term=orthologous to S. cerevisiae YNL241C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009051; pentose-phosphate shunt, oxidative branch
GO:0051156; glucose 6-phosphate metabolic process
GO:0004345; glucose-6-phosphate 1-dehydrogenase activity
GO:0005737; cytoplasm" ; gene "SPCC794.01c" ; product "glucose-6-phosphate 1-dehydrogenase (predicted)" ; EC_number "1.1.1.49" ;
chromosome3 GeneDB mRNA 1591327 1592889 . + . mRNA SPCC13B11.01 ; systematic_id "SPCC13B11.01" ; colour "2" ; gene "SPCC13B11.01" ; Alias "adh1" ; db_xref "SPD:16/16B03" ; synonym "adh" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR145W and YMR083W and YMR303C and YOL086C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0006116; NADH oxidation
GO:0000947; amino acid catabolic process to alcohol via Ehrlich pathway
GO:0043458; ethanol biosynthetic process during fermentation
GO:0004022; alcohol dehydrogenase (NAD) activity" ; primary_name "adh1" ; product "alcohol dehydrogenase Adh1" ; EC_number "1.1.1.1" ;
chromosome3 GeneDB mRNA 737089 737870 . - . mRNA SPCC18B5.09c ; db_xref "SPD:02/02C04" ; systematic_id "SPCC18B5.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPCC18B5.09c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1810337 1812646 . - . mRNA SPCC285.09c ; systematic_id "SPCC285.09c" ; colour "2" ; gene "cgs2 ||| SPCC285.09c ||| pde1" ; Alias "cgs2" ; db_xref "SPD:25/25F07" ; synonym "pde1" ; GO "GO:0004115; 3',5'-cyclic-AMP phosphodiesterase activity
GO:0006198; cAMP catabolism
GO:0019933; cAMP-mediated signaling
GO:0031137; regulation of conjugation with cellular fusion
GO:0007194; negative regulation of adenylate cyclase activity
GO:0006995; cellular response to nitrogen starvation
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20070523 ||| term=species distribution, conserved in Bacteria; date=20070523 ||| term=orthologous to S. cerevisiae YGL248W; date=19700101 ||| term=pathway, links stress-activated MAPK (Sty1) pathway to cAMP-dependent protein kinase (Pka1) pathway; db_xref=PMID:15448137; date=20090104 ||| term=gene expression, transcriptionally regulates Pka1 pathway genes; db_xref=PMID:15448137; cv=gene_ex; date=20090104" ; primary_name "cgs2" ; product "cAMP-specific phosphodiesterase Cgs2" ; EC_number "3.1.4.17" ;
chromosome3 GeneDB mRNA 1577080 1577960 . + . mRNA SPCC162.06c ; db_xref "SPD:09/09B04" ; systematic_id "SPCC162.06c" ; colour "7" ; GO "GO:0000329; vacuolar membrane (sensu Fungi)
GO:0032511; late endosome to vacuole transport vi multivesicular body sorting pathway
GO:0043162; ubiquitin-dependent protein catabolism via the multivesicular body pathway
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR486C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human CHMP5 ortholog; date=20100802" ; gene "SPCC162.06c" ; product "vacuolar sorting protein Vps60 (predicted)" ;
chromosome3 GeneDB mRNA 1734767 1735183 . - . mRNA SPCC1450.05c ; systematic_id "SPCC1450.05c" ; colour "2" ; gene "rox3 ||| med19 ||| SPCC1450.05c" ; Alias "rox3" ; db_xref "SPD:03/03D01" ; synonym "med19" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0005634; nucleus
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL093C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "rox3" ; product "mediator complex subunit Med19/Rox3" ;
chromosome3 GeneDB mRNA 604405 604872 . - . mRNA SPCC1183.12 ; systematic_id "SPCC1183.12" ; colour "2" ; gene "spo13 ||| SPCC1183.12" ; Alias "spo13" ; obsolete_name "SPNCRNA.546" ; synonym "SPNGAF60" ; GO "GO:0005824; outer plaque of spindle pole body
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0030437; ascospore formation
GO:0031322; ascospore-type prospore-specific spindle pole body modification
GO:0005085; guanyl-nucleotide exchange factor activity
GO:0032120; ascospore-type prospore membrane assembly" ; controlled_curation "term=species distribution, orthologs cannot be distinguished; date=20080402 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:18367542; date=20080402 ||| term=orthologous to S. cerevisiae YKR092C; date=20101020 ||| term=gene expression, expressed during meiosis; qualifier=specifically; db_xref=PMID:1836754; date=20101020 ||| term=phenotype, sporulation defects; db_xref=PMID:18367542; date=20101020" ; primary_name "spo13" ; product "sporulation specific protein Spo13" ;
chromosome3 GeneDB mRNA 1977207 1978528 . - . mRNA SPCC18.12c ; db_xref "SPD:16/16G01" ; systematic_id "SPCC18.12c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR004W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=PINc domain; date=20091004" ; gene "SPCC18.12c" ; product "rRNA processing protein (predicted)" ;
chromosome3 GeneDB mRNA 924212 924936 . - . mRNA SPCC24B10.14c ; systematic_id "SPCC24B10.14c" ; colour "2" ; gene "xlf1 ||| nej1 ||| SPCC24B10.14c ||| mug104" ; Alias "xlf1" ; db_xref "SPD:08/08F04" ; synonym "nej1 ||| mug104" ; GO "GO:0032807; DNA ligase IV complex
GO:0006302; double-strand break repair
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0000724; double-strand break repair via homologous recombination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human NHEJ1 ortholog; date=20060627 ||| term=disease associated, cancer; date=20070104 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17151234; date=20070104 ||| term=orthologous to S. cerevisiae YLR265C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "xlf1" ; product "xrcc4 like factor, cernunnon" ;
chromosome3 GeneDB mRNA 739356 741314 . - . mRNA SPCC18B5.11c ; systematic_id "SPCC18B5.11c" ; colour "2" ; gene "cds1 ||| SPCC18B5.11c" ; db_xref "SPD:36/36F11" ; Alias "cds1" ; GO "GO:0005524; ATP binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0031573; intra-S DNA damage checkpoint
GO:0031573; intra-S DNA damage checkpoint
GO:0006468; protein amino acid phosphorylation
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=phenotype, sensitive to HU; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, DNA damage checkpoint defects, S-phase; db_xref=PMID:19037101; cv=phenotype; qualifier=deletion; date=20090206 ||| term=orthologous to S. cerevisiae YPL153C; date=19700101 ||| term=gene expression, alternative transcripts; cv=gene_ex; db_xref=EMBL:AJ783838; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:14668484; date=20090110 ||| term=name description, Checking DNA Synthesis; cv=name_description; date=20090605 ||| term=human CHEK2 ortholog; date=20100217 ||| term=disease associated, cancer; date=20100217 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:11313465; date=19700101 ||| term=target of Rad3; qualifier=phosphorylated_by|activates; residue=Thr11; db_xref=PMID:11313465; date=19700101" ; primary_name "cds1" ; product "replication checkpoint kinase Cds1" ;
chromosome3 GeneDB mRNA 804518 806059 . - . mRNA SPCC1393.06c ; db_xref "SPD:21/21D08" ; systematic_id "SPCC1393.06c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1393.06c" ; product "rRNA processing protein Ipi1 (predicted)" ;
chromosome3 GeneDB mRNA 492370 495926 . - . mRNA SPCC970.09 ; systematic_id "SPCC970.09" ; colour "2" ; gene "sec8 ||| SPCC970.09" ; Alias "sec8" ; db_xref "SPD:30/30E09" ; GO "GO:0051285; cell cortex of cell tip
GO:0032153; cell division site
GO:0000145; exocyst
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0006897; endocytosis
GO:0006887; exocytosis
GO:0006886; intracellular protein transport
GO:0006904; vesicle docking during exocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11854409; date=19700101 ||| term=orthologous to S. cerevisiae YPR055W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec8" ; product "exocyst complex subunit Sec8" ;
chromosome3 GeneDB mRNA 774760 776740 . - . mRNA SPCC1020.05 ; db_xref "SPD:24/24H03" ; systematic_id "SPCC1020.05" ; colour "7" ; GO "GO:0004721; phosphoprotein phosphatase activity
GO:0030968; unfolded protein response
GO:0006470; protein amino acid dephosphorylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR361C and YOR137C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPCC1020.05" ; product "phosphoprotein phosphatase (predicted)" ;
chromosome3 GeneDB mRNA 625104 626276 . - . mRNA SPCC31H12.03c ; db_xref "SPD:08/08H10" ; systematic_id "SPCC31H12.03c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0016973; poly(A)+ mRNA export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SAP domain; date=19700101 ||| term=orthologous to S. cerevisiae YER063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC31H12.03c" ; product "RNA binding protein (predicted)" ;
chromosome3 GeneDB mRNA 1605132 1606286 . + . mRNA SPCC777.05 ; systematic_id "SPCC777.05" ; colour "7" ; gene "gtr2 ||| SPCC777.05" ; Alias "gtr2" ; db_xref "SPD:15/15E02" ; GO "GO:0007264; small GTPase mediated signal transduction
GO:0005525; GTP binding
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR163W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gtr2" ; product "Gtr1/RagA G protein Gtr2 (predicted)" ;
chromosome3 GeneDB mRNA 2260015 2263701 . + . mRNA SPCC1840.03 ; systematic_id "SPCC1840.03" ; colour "2" ; gene "sal3 ||| pse1 ||| SPCC1840.03" ; Alias "sal3" ; db_xref "SPD:30/30C10" ; synonym "pse1" ; GO "GO:0005737; cytoplasm
; nuclear membrane
GO:0005643; nuclear pore
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0008565; protein transporter activity
GO:0006606; protein import into nucleus
GO:0034613; cellular protein localization
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12399381; date=19700101 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:12399381; date=19700101 ||| term=importin family; db_xref=PMID:12399381; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YMR308C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sal3" ; product "karyopherin Sal3" ;
chromosome3 GeneDB mRNA 1818365 1818924 . + . mRNA SPCC285.12 ; systematic_id "SPCC285.12" ; colour "7" ; gene "lsm7 ||| SPCC285.12" ; Alias "lsm7" ; db_xref "SPD:03/03A03" ; GO "GO:0003723; RNA binding
GO:0006402; mRNA catabolism
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005688; U6 snRNP
GO:0030490; maturation of SSU-rRNA" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL147W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "lsm7" ; product "U6 snRNP-associated protein Lsm7 (predicted)" ;
chromosome3 GeneDB mRNA 223882 225756 . - . mRNA SPCC548.05c ; db_xref "SPD:25/25B12" ; systematic_id "SPCC548.05c" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0005634; nucleus
GO:0034080; CenH3-containing nucleosome assembly at centromere" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YOL054W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC548.05c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome3 GeneDB mRNA 443001 445146 . - . mRNA SPCC4G3.14 ; systematic_id "SPCC4G3.14" ; colour "7" ; gene "SPCC4G3.14 ||| mdj1" ; Alias "mdj1" ; db_xref "SPD:25/25E10" ; GO "GO:0030544; Hsp70 protein binding
GO:0006508; proteolysis
GO:0006457; protein folding
GO:0005743; mitochondrial inner membrane
GO:0051082; unfolded protein binding
GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL016C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mdj1" ; product "mitochondrial DNAJ domain protein Mdj1 (predicted)" ;
chromosome3 GeneDB mRNA 575499 578410 . + . mRNA SPCC1672.07 ; db_xref "SPD:39/39B02" ; systematic_id "SPCC1672.07" ; colour "7" ; GO "GO:0005732; small nucleolar ribonucleoprotein complex
GO:0006364; 35S primary transcript processing" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR409C; date=19700101 ||| term=disease associated, primary open-angle glaucoma; date=20080916 ||| term=human WDR36 ortholog; date=20080916 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1672.07" ; product "U3 snoRNP-associated protein Utp21 (predicted)" ;
chromosome3 GeneDB mRNA 623607 624527 . - . mRNA SPCC31H12.02c ; systematic_id "SPCC31H12.02c" ; colour "7" ; gene "SPCC31H12.02c ||| mug73" ; note "no evidence for chaperone activity of YCR021C" ; Alias "mug73" ; db_xref "SPD:12/12H01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal anchor; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR054W and YCR021C and YDR033W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Fungi only; date=20100827" ; GO "GO:0016021; integral to membrane
GO:0005216; ion channel activity
GO:0055085; transmembrane transport" ; primary_name "mug73" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 1216887 1221340 . + . mRNA SPCC550.14 ; systematic_id "SPCC550.14" ; colour "2" ; gene "SPCC550.14 ||| vgl1" ; db_xref "SPD:39/39D01" ; Alias "vgl1" ; GO "GO:0003677; DNA binding
GO:0003723; RNA binding
GO:0006342; chromatin silencing
GO:0008298; intracellular mRNA localization
GO:0005783; endoplasmic reticulum
GO:0042175; nuclear envelope-endoplasmic reticulum network
GO:0034605; cellular response to heat
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=KH domain; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; evidence=ISS; qualifier=predicted; date=19700101 ||| term=protein sequence feature, NES; cv=sequence_feature; evidence=ISS; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YJL080C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human HDLBP ortholog; date=20100622" ; primary_name "vgl1" ; product "vigilin (predicted)" ;
chromosome3 GeneDB mRNA 1502610 1504592 . + . mRNA SPCC188.11 ; systematic_id "SPCC188.11" ; colour "2" ; gene "prp45 ||| cwf13 ||| snw1 ||| SPCC188.11 ||| SPCC584.08" ; Alias "prp45" ; db_xref "SPD:36/36B09" ; synonym "cwf13 ||| snw1 ||| SPCC584.08" ; GO "GO:0005681; spliceosome complex
GO:0005515; protein binding
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; date=19700101 ||| term=orthologous to S. cerevisiae YAL032C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "prp45" ; product "splicing factor Prp45" ;
chromosome3 GeneDB mRNA 1565587 1571195 . + . mRNA SPCC162.08c ; systematic_id "SPCC162.08c" ; colour "2" ; gene "nup211 ||| SPCC162.08c" ; Alias "nup211" ; db_xref "SPD:31/31B06" ; GO "GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0043021; ribonucleoprotein binding
GO:0051301; cell division
GO:0006606; protein import into nucleus
GO:0006406; mRNA export from nucleus
GO:0034399; nuclear periphery
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; cv=phenotype; db_xref=PMID:19557351; date=20090628 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YKR095W and YIL149C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human TPR ortholog; date=20100217 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nup211" ; product "nucleoporin nup211" ;
chromosome3 GeneDB mRNA 1382490 1383480 . - . mRNA SPCC1281.02c ; systematic_id "SPCC1281.02c" ; colour "2" ; gene "spf30 ||| SPCC1281.02c" ; Alias "spf30" ; db_xref "SPD:13/13B06" ; GO "GO:0000244; assembly of spliceosomal tri-snRNP
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=tudor domain; date=20060918 ||| term=disease associated, motor neurone disease; date=20060918 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091123" ; primary_name "spf30" ; product "splicing factor Spf30 (predicted)" ;
chromosome3 GeneDB mRNA 1838485 1839525 . + . mRNA SPCC1223.02 ; systematic_id "SPCC1223.02" ; colour "2" ; gene "nmt1 ||| thi3 ||| SPCC1223.02" ; Alias "nmt1" ; db_xref "SPD:15/15G09" ; synonym "thi3" ; GO "; regulation of thiamin biosynthetic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, repressed by thiamine; cv=gene_ex; date=20060804 ||| term=gene expression, transcriptionally regulated by Thi1; db_xref=PMID:8163491; cv=gene_ex; date=20060804 ||| term=gene expression, transcriptionally regulated by Thi5; db_xref=PMID:16874521; cv=gene_ex; date=20060804 ||| term=orthologous to S. cerevisiae YFL058W and YJR156C and YNL332W and YDL244W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "nmt1" ; product "no message in thiamine Nmt1" ;
chromosome3 GeneDB mRNA 342900 346256 . + . mRNA SPCC736.14 ; systematic_id "SPCC736.14" ; colour "2" ; gene "dis1 ||| SPCC736.14" ; Alias "dis1" ; db_xref "SPD:29/29G02" ; GO "GO:0005816; spindle pole body
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0000819; sister chromatid segregation
GO:0007017; microtubule-based process
GO:0015630; microtubule cytoskeleton
GO:0008017; microtubule binding
GO:0090307; spindle assembly involved in mitosis
GO:0000778; condensed chromosome kinetochore" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=MAP215/Dis1 family; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YLR045C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:7628693; date=20090213 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "dis1" ; product "microtubule-associated protein Dis1" ;
chromosome3 GeneDB mRNA 2148728 2149288 . + . mRNA SPCC1620.03 ; systematic_id "SPCC1620.03" ; colour "8" ; gene "SPCC1620.03 ||| mug163" ; db_xref "SPD:05/05H03" ; Alias "mug163" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; primary_name "mug163" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1578125 1579062 . - . mRNA SPCC162.05 ; systematic_id "SPCC162.05" ; colour "2" ; gene "coq3 ||| SPCC162.05" ; Alias "coq3" ; db_xref "SPD:43/43D01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL096C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0004395; hexaprenyldihydroxybenzoate methyltransferase activity
GO:0006744; ubiquinone biosynthesis" ; primary_name "coq3" ; product "hexaprenyldihydroxybenzoate methyltransferase Coq3" ; EC_number "2.1.1.114" ;
chromosome3 GeneDB mRNA 1281886 1282392 . - . mRNA SPCC23B6.05c ; systematic_id "SPCC23B6.05c" ; colour "2" ; gene "ssb3 ||| rpa3 ||| SPCC23B6.05c" ; Alias "ssb3" ; db_xref "SPD:04/04D10" ; synonym "rpa3" ; GO "GO:0003697; single-stranded DNA binding
GO:0006261; DNA replication
GO:0006310; DNA recombination
GO:0006281; DNA repair
GO:0005662; DNA replication factor A complex
GO:0000781; chromosome, telomeric region
GO:0006269; DNA replication, synthesis of RNA primer
GO:0000723; telomere maintenance" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL173C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; primary_name "ssb3" ; product "DNA replication factor A subunit Ssb3" ;
chromosome3 GeneDB mRNA 832236 833392 . - . mRNA SPCC2H8.05c ; db_xref "SPD:06/06D01" ; systematic_id "SPCC2H8.05c" ; synonym "SPCC63.01c" ; colour "8" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPCC2H8.05c ||| SPCC63.01c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1985403 1985951 . - . mRNA SPCC18.16c ; systematic_id "SPCC18.16c" ; colour "2" ; gene "fmn1 ||| SPCC18.16c" ; Alias "fmn1" ; db_xref "SPD:04/04G03" ; GO "GO:0008531; riboflavin kinase activity
GO:0009398; FMN biosynthesis
GO:0046443; FAD metabolism
GO:0005743; mitochondrial inner membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR236C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "fmn1" ; product "riboflavin kinase Fmn1" ;
chromosome3 GeneDB mRNA 1147316 1151324 . - . mRNA SPCC4B3.15 ; systematic_id "SPCC4B3.15" ; colour "2" ; gene "dmf1 ||| mid1 ||| SPCC4B3.15" ; Alias "mid1" ; db_xref "SPD:47/47B12" ; synonym "dmf1" ; GO "GO:0071341; medial cortical node
GO:0031097; medial ring
GO:0005634; nucleus
GO:0005515; protein binding
GO:0033205; cell cycle cytokinesis
GO:0034613; cellular protein localization
GO:0051260; protein homooligomerization
GO:0010687; site selection involved in cell cycle cytokinesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during M-G1 phase; cv=gene_ex; db_xref=PMID:7634333; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; date=19700101 ||| term=gene expression, transcriptionally regulated by PBF transcription complex; db_xref=PMID:12411492; cv=gene_ex; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=localization dependent on Cdr2; db_xref=PMID:19474789; date=20090826 ||| term=human ANLN ortholog; date=20110114" ; primary_name "mid1" ; product "medial ring protein Mid1" ;
chromosome3 GeneDB mRNA 1034252 1037057 . - . mRNA SPCC1259.02c ; db_xref "SPD:28/28H05" ; systematic_id "SPCC1259.02c" ; colour "10" ; GO "GO:0008233; peptidase activity
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ERMP1 ortholog; date=20100728" ; gene "SPCC1259.02c" ; product "Endoplasmic Reticulum metallopeptidase 1 (predicted)" ;
chromosome3 GeneDB mRNA 673476 675251 . + . mRNA SPCC16C4.07 ; systematic_id "SPCC16C4.07" ; colour "2" ; gene "scw1 ||| SPCC16C4.07" ; db_xref "SPD:35/35C03" ; Alias "scw1" ; GO "GO:0005737; cytoplasm
GO:0032955; barrier septum formation involved in cell cycle cytokinesis
; regulation of fungal type cell wall biosynthesis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12242222; date=19700101 ||| term=orthologous to S. cerevisiae YNL197C and YDL224C; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "scw1" ; product "RNA-binding protein Scw1" ;
chromosome3 GeneDB mRNA 2115206 2116687 . - . mRNA SPCC126.01c ; systematic_id "SPCC126.01c" ; colour "10" ; gene "SPCC576.18c ||| SPCC126.01c" ; Alias "SPCC576.18c" ; db_xref "SPD:17/17E03" ; synonym "SPCC576.18c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPCC576.18c" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 920455 921221 . - . mRNA SPCC24B10.11c ; systematic_id "SPCC24B10.11c" ; colour "7" ; gene "SPCC24B10.11c ||| mft1" ; Alias "mft1" ; db_xref "SPD:43/43B09" ; GO "GO:0006406; mRNA export from nucleus
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0000347; THO complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; date=20061212 ||| term=orthologous to S. cerevisiae YMl062C; date=19700101 ||| term=human THOC7 ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mft1" ; product "THO complex subunit 7 Mft1 (predicted)" ;
chromosome3 GeneDB mRNA 2188075 2190827 . - . mRNA SPCC830.05c ; systematic_id "SPCC830.05c" ; colour "2" ; gene "SPCC830.05c ||| epl1" ; Alias "epl1" ; db_xref "SPD:37/37H06" ; GO "GO:0016573; histone acetylation
GO:0006357; regulation of transcription from RNA polymerase II promoter
GO:0006281; DNA repair
GO:0035267; NuA4 histone acetyltransferase complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "epl1" ; product "NuA4 histone acetyltransferase complex Epl1" ;
chromosome3 GeneDB mRNA 565760 568015 . - . mRNA SPCC1672.03c ; db_xref "SPD:25/25E07" ; systematic_id "SPCC1672.03c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL238C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0046098; guanine metabolism
GO:0005737; cytoplasm
GO:0008892; guanine deaminase activity" ; gene "SPCC1672.03c" ; product "guanine deaminase (predicted)" ; EC_number "3.5.4.3" ;
chromosome3 GeneDB mRNA 1816102 1818035 . + . mRNA SPCC285.11 ; systematic_id "SPCC285.11" ; colour "7" ; gene "ucp10 ||| SPCC285.11" ; Alias "ucp10" ; db_xref "SPD:23/23F11" ; GO "GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0005783; endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML013W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ucp10" ; product "UBA/UAS domain protein Ucp10 (predicted)" ;
chromosome3 GeneDB mRNA 361356 361682 . + . mRNA SPCC594.03 ; db_xref "SPD:01/01G10" ; systematic_id "SPCC594.03" ; controlled_curation "term=warning, not detected in other Schizos; cv=warning; date=20100325 ||| term=species distribution, sequence orphan; date=20081211 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; colour "8" ; gene "SPCC594.03" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 192446 193126 . - . mRNA SPCC1235.08c ; systematic_id "SPCC1235.08c" ; colour "10" ; gene "pdh1 ||| SPCC1235.08c" ; Alias "pdh1" ; db_xref "SPD:07/07H07" ; GO "; COPI-coated vesicle
GO:0005794; Golgi apparatus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOL107W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TMEM115 ortholog; date=20100727" ; primary_name "pdh1" ; product "DUF1751 family protein" ;
chromosome3 GeneDB mRNA 2237547 2239335 . - . mRNA SPCC1919.14c ; systematic_id "SPCC1919.14c" ; colour "7" ; gene "bdp1 ||| SPCC1919.14c" ; db_xref "SPD:34/34G06" ; Alias "bdp1" ; GO "GO:0003677; DNA binding
GO:0006383; transcription from RNA polymerase III promoter
GO:0000126; transcription factor TFIIIB complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Myb family; date=19700101 ||| term=orthologous to S. cerevisiae YNL039W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "bdp1" ; product "transcription factor TFIIIB complex subunit Bdp1 (predicted)" ; reserved_name "bdp1" ;
chromosome3 GeneDB mRNA 31185 31520 . - . mRNA SPCP20C8.02c ; db_xref "SPD:41/41A03" ; systematic_id "SPCP20C8.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20071122 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPCP20C8.02c" ; product "S. pombe specific UPF0321 family protein 1" ;
chromosome3 GeneDB mRNA 265405 267936 . + . mRNA SPCC794.08 ; db_xref "SPD:28/28G05" ; systematic_id "SPCC794.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YMR212C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0090002; establishment of protein localization in plasma membrane
GO:0005739; mitochondrion
GO:0005886; plasma membrane" ; gene "SPCC794.08" ; product "HEAT repeat protein, involved in localization to plasma membrane (predicted)" ;
chromosome3 GeneDB mRNA 1653863 1655180 . + . mRNA SPCC663.11 ; systematic_id "SPCC663.11" ; colour "10" ; gene "SPCC663.11" ; Alias "saf1" ; db_xref "SPD:10/10H12" ; GO "GO:0006397; mRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=human WBP-11 ortholog; date=20081105 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "saf1" ; product "ww domain binding protein 11 (wbp11) ortholog" ; reserved_name "saf1" ;
chromosome3 GeneDB mRNA 1161336 1162216 . - . mRNA SPCC4B3.08 ; systematic_id "SPCC4B3.08" ; colour "7" ; gene "SPCC4B3.08" ; Alias "lsg1" ; db_xref "SPD:07/07F01" ; GO "GO:0032806; carboxy-terminal domain protein kinase complex
GO:0005634; nucleus
GO:0005509; calcium ion binding
GO:0031124; mRNA 3' end processing
GO:0045903; positive regulation of translational fidelity
GO:0006468; protein amino acid phosphorylation
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=warning, possible false positive domain; qualifier=EF_hand; cv=warning; date=19700101 ||| term=orthologous to S. cerevisiae YML112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsg1" ; product "Lsk1 complex gamma subunit (predicted)" ;
chromosome3 GeneDB mRNA 1983366 1985181 . + . mRNA SPCC18.15 ; db_xref "SPD:24/24E02" ; systematic_id "SPCC18.15" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBR246W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human WDR85 ortholog; date=20100728" ; GO "GO:0006360; transcription from RNA polymerase I promoter" ; gene "SPCC18.15" ; product "WD repeat protein, human WDR85 family, implicated in rRNA transcription" ;
chromosome3 GeneDB mRNA 2304137 2305750 . - . mRNA SPCC965.11c ; db_xref "SPD:25/25H04" ; systematic_id "SPCC965.11c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL055W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPCC965.11c" ; product "amino acid transporter (predicted)" ;
chromosome3 GeneDB mRNA 1785998 1786979 . - . mRNA SPCC1442.10c ; systematic_id "SPCC1442.10c" ; colour "2" ; gene "rpb3 ||| SPCC1442.10c" ; note "The Rpb2-Rpb3-Rpb11 complex has DNA binding activity. Alone, Rpb3 exhibits virtually no DNA binding activity (PMID:9325316)" ; Alias "rpb3" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:14/14B12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006366; transcription from RNA polymerase II promoter
GO:0003899; DNA-directed RNA polymerase activity
GO:0003677; DNA binding
GO:0005665; DNA-directed RNA polymerase II, core complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding" ; primary_name "rpb3" ; product "RNA polymerase II subunit 3" ;
chromosome3 GeneDB mRNA 1408816 1409330 . - . mRNA SPCC622.06c ; db_xref "SPD:02/02E12" ; systematic_id "SPCC622.06c" ; controlled_curation "term=similar to S. pombe SPCC622.03c; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC622.06c" ; product "dubious" ; note "low complexity gene free region" ;
chromosome3 GeneDB mRNA 455068 457576 . + . mRNA SPCC4G3.09c ; systematic_id "SPCC4G3.09c" ; colour "7" ; gene "SPCC4G3.09c ||| gyp3" ; Alias "gyp3" ; db_xref "SPD:26/26F05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL293W and YOL112W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0007015; actin filament organization
GO:0006887; exocytosis
GO:0005737; cytoplasm
GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; primary_name "gyp3" ; product "GTPase activating protein Gyp3 (predicted)" ; reserved_name "gyp3" ;
chromosome3 GeneDB mRNA 2247366 2248193 . - . mRNA SPCC1840.01c ; systematic_id "SPCC1840.01c" ; colour "2" ; gene "mog1 ||| SPCC1840.01c ||| SPCC790.04c" ; Alias "mog1" ; db_xref "SPD:06/06B04" ; synonym "SPCC790.04c" ; GO "GO:0005634; nucleus
GO:0008536; Ran GTPase binding
GO:0000216; M/G1 transition of mitotic cell cycle
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0007264; small GTPase mediated signal transduction
GO:0006606; protein import into nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11290708; date=19700101 ||| term=orthologous to S. cerevisiae YJR074W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mog1" ; product "Ran GTPase binding protein Mog1" ;
chromosome3 GeneDB mRNA 1255221 1256816 . + . mRNA SPCC645.10 ; db_xref "SPD:24/24E08" ; systematic_id "SPCC645.10" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER168C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004810; tRNA adenylyltransferase activity
GO:0006400; tRNA modification" ; gene "SPCC645.10" ; product "ATP(CTP) tRNA nucleotidyltransferase (predicted)" ; EC_number "2.7.7.25" ;
chromosome3 GeneDB mRNA 844394 845417 . + . mRNA SPCC63.05 ; db_xref "SPD:13/13H06" ; systematic_id "SPCC63.05" ; colour "7" ; GO "GO:0031929; TOR signaling cascade" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR028W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC63.05" ; product "TAP42 family protein involved in TOR signalling (predicted)" ;
chromosome3 GeneDB mRNA 461951 462470 . + . mRNA SPCC4G3.06c ; systematic_id "SPCC4G3.06c" ; colour "7" ; gene "SPCC4G3.06c ||| mrpl4" ; Alias "mrpl4" ; db_xref "SPD:03/03F10" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR439W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl4" ; product "mitochondrial ribosomal protein subunit L4 (predicted)" ;
chromosome3 GeneDB mRNA 116929 117847 . - . mRNA SPCC330.21 ; Alias "new25" ; systematic_id "SPCC330.21" ; controlled_curation "term=warning, new gene; db_xref=PMID:21270388; date=20110131 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; primary_name "new25" ; gene "SPCC330.21" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 906321 906894 . + . mRNA SPCC24B10.03 ; db_xref "SPD:06/06B05" ; systematic_id "SPCC24B10.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC24B10.03" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 180815 182136 . - . mRNA SPCC1235.04c ; db_xref "SPD:12/12C09" ; systematic_id "SPCC1235.04c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL045C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0046444; FMN metabolism
GO:0006747; FAD biosynthesis
GO:0003919; FMN adenylyltransferase activity
GO:0005737; cytoplasm" ; gene "SPCC1235.04c" ; product "FAD synthetase (predicted)" ; EC_number "2.7.7.2" ;
chromosome3 GeneDB mRNA 464890 466156 . + . mRNA SPCC4G3.04c ; systematic_id "SPCC4G3.04c" ; colour "7" ; gene "coq5 ||| SPCC4G3.04c" ; Alias "coq5" ; db_xref "SPD:15/15H12" ; GO "GO:0006744; ubiquinone biosynthesis
GO:0005739; mitochondrion
GO:0009060; aerobic respiration
GO:0043334; 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "coq5" ; product "C-methytransferase (predicted)" ;
chromosome3 GeneDB mRNA 885750 886733 . - . mRNA SPCC16A11.09c ; systematic_id "SPCC16A11.09c" ; colour "7" ; gene "tim23 ||| SPCC16A11.09c" ; Alias "tim23" ; db_xref "SPD:42/42F01" ; GO "GO:0005744; mitochondrial inner membrane presequence translocase complex
GO:0030150; protein import into mitochondrial matrix
GO:0015450; protein translocase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR017W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tim23" ; product "TIM23 translocase complex subunit Tim23 (predicted)" ;
chromosome3 GeneDB mRNA 173942 176360 . + . mRNA SPCC1235.01 ; systematic_id "SPCC1235.01" ; colour "8" ; gene "SPCC320.02c ||| SPCC1235.01" ; note "~37 copies of a 7-10 repeat consensus 'PMEEITTMTI' and a S/N rich C terminal region" ; Alias "SPCC320.02c" ; db_xref "SPD:27/27C03" ; synonym "SPCC320.02c" ; GO "GO:0070263; external side of fungal-type cell wall" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090410 ||| term=protein sequence feature, repeat containing; cv=sequence_feature; date=20090410" ; primary_name "SPCC320.02c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2145761 2147258 . + . mRNA SPCC1620.02 ; systematic_id "SPCC1620.02" ; colour "12" ; gene "SPCC1620.02 ||| wtf23" ; Alias "wtf23" ; obsolete_name "wtf10" ; db_xref "SPD:24/24C07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf23" ; product "wtf element Wtf23" ;
chromosome3 GeneDB mRNA 1714139 1714555 . + . mRNA SPCC191.06 ; db_xref "SPD:03/03C12" ; systematic_id "SPCC191.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC191.06" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1386802 1387803 . + . mRNA SPCC1281.04 ; db_xref "SPD:14/14G03" ; systematic_id "SPCC1281.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR127W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0050236; pyridoxine 4-dehydrogenase activity
GO:0042821; pyridoxal biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPCC1281.04" ; product "pyridoxal reductase (predicted)" ; EC_number "1.1.1.65" ;
chromosome3 GeneDB mRNA 2127578 2129500 . - . mRNA SPCC126.07c ; db_xref "SPD:35/35E12" ; systematic_id "SPCC126.07c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004842; ubiquitin-protein ligase activity
GO:0008270; zinc ion binding
GO:0016567; protein ubiquitination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=zf-PHD finger; date=20060726 ||| term=orthologous to S. cerevisiae YPR093C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC126.07c" ; product "human CTD-binding SR-like protein rA9 homolog (predicted)" ;
chromosome3 GeneDB mRNA 1787290 1787878 . + . mRNA SPCC1442.19 ; db_xref "PMID:18488015" ; systematic_id "SPCC1442.19" ; controlled_curation "term=orthologous to S. cerevisiae YKL167C; date=20080102 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0032543; mitochondrial translation" ; gene "SPCC1442.19" ; product "mitochondrial ribosomal protein Mrp49 (predicted)" ;
chromosome3 GeneDB mRNA 2231583 2235979 . - . mRNA SPCC1919.12c ; db_xref "SPD:29/29C07" ; systematic_id "SPCC1919.12c" ; colour "7" ; GO "GO:0006508; proteolysis
GO:0008237; metallopeptidase activity
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR074W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1919.12c" ; product "aminopeptidase (predicted)" ;
chromosome3 GeneDB mRNA 2219127 2220191 . - . mRNA SPCC1919.06c ; systematic_id "SPCC1919.06c" ; colour "12" ; db_xref "SPD:51/51C11" ; obsolete_name "wtf9-pseudo" ; Alias "wtf25" ; synonym "SPCC1919.06c" ; primary_name "wtf25" ; product "wtf element" ;
chromosome3 GeneDB mRNA 1794883 1796037 . - . mRNA SPCC1442.16c ; systematic_id "SPCC1442.16c" ; colour "7" ; gene "SPCC1442.16c ||| SPCC285.01c ||| zta1" ; Alias "zta1" ; db_xref "SPD:14/14D07" ; synonym "SPCC285.01c" ; GO "GO:0003960; NADPH:quinone reductase activity
GO:0017091; AU-specific RNA binding
GO:0016071; mRNA metabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR046C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "zta1" ; product "NADPH quinone oxidoreductase/ARE-binding protein (predicted)" ; EC_number "1.6.5.5" ;
chromosome3 GeneDB mRNA 1451790 1454540 . + . mRNA SPCC11E10.01 ; systematic_id "SPCC11E10.01" ; colour "7" ; gene "SPCC61.06 ||| SPCC11E10.01" ; Alias "SPCC61.06" ; db_xref "KEGG:MAP00271; ||| KEGG:MAP00272; ||| KEGG:MAP00920; ||| SPD:40/40D04" ; synonym "SPCC61.06" ; GO "GO:0019279; methionine biosynthesis from L- homoserine via cystathione
GO:0004121; cystathionine beta-lyase activity
GO:0005777; peroxisome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL184C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPCC61.06" ; product "cystathionine beta-lyase (predicted)" ; EC_number "4.4.1.8" ;
chromosome3 GeneDB mRNA 1475605 1477978 . + . mRNA SPCC188.02 ; systematic_id "SPCC188.02" ; colour "2" ; gene "par1 ||| SPCC188.02" ; Alias "par1" ; db_xref "SPD:51/51E08" ; GO "GO:0000159; protein phosphatase type 2A complex
GO:0031029; regulation of septation initiation signaling
GO:0033554; cellular response to stress
GO:0031030; negative regulation of septation initiation signaling
GO:0031030; negative regulation of septation initiation signaling
GO:0031030; negative regulation of septation initiation signaling" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR014W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "par1" ; product "protein phosphatase regulatory subunit Par1" ;
chromosome3 GeneDB mRNA 327391 329647 . + . mRNA SPCC736.08 ; literature "PMID:19101542" ; systematic_id "SPCC736.08" ; colour "2" ; gene "SPCC736.08" ; Alias "cbf11" ; db_xref "SPD:26/26G06" ; GO "GO:0005634; nucleus
GO:0043565; sequence-specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0016563; transcriptional activator activity
GO:0022408; negative regulation of cell-cell adhesion
GO:0010812; negative regulation of cell-substrate adhesion
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0032955; regulation of barrier septum formation
GO:0010590; regulation of cell separation during cytokinesis
GO:0051783; regulation of nuclear division" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=name description, C promoter element Binding Factor; cv=name_description; date=20070712 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=DNA binding specificity, binds CSL response element 5'-GTG[G/A]GAA-3'; qualifier=in_vitro; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, cut; qualifier=deletion; cv=phenotype; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, cytokinesis defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, sensitive to cold; db_xref=PMID:19101542; qualifier=deletion; cv=phenotype; date=20090108 ||| term=phenotype, adhesion defects; qualifier=deletion; cv=phenotype; db_xref=PMID:19101542; date=20090108 ||| term=phenotype, high-frequency diploidization in heterothallic strains; db_xref=PMID:19101542; qualifier=deletion; cv=phenotype; date=20090108 ||| term=phenotype, colony morphology defects; cv=phenotype; qualifier=deletion; db_xref=PMID:19101542; date=20090108" ; primary_name "cbf11" ; product "CBF1/Su(H)/LAG-1 family transcription factor Cbf11" ;
chromosome3 GeneDB mRNA 388550 389870 . - . mRNA SPCC1682.09c ; db_xref "SPD:43/43G12" ; systematic_id "SPCC1682.09c" ; colour "7" ; GO "GO:0005743; mitochondrial inner membrane
GO:0001409; guanine nucleotide transporter activity
GO:0001408; guanine nucleotide transport
GO:0000002; mitochondrial genome maintenance
GO:0006879; iron ion homeostasis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL198C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=mitochondrial carrier; date=20100901" ; gene "SPCC1682.09c" ; product "mitochondrial guanine nucleotide transporter (predicted)" ;
chromosome3 GeneDB mRNA 36972 38788 . + . mRNA SPCC1884.01 ; systematic_id "SPCC1884.01" ; controlled_curation "term=warning, non-consensus splice sites; cv=warning; date=20100227 ||| term=species distribution, sequence orphan; date=20100227 ||| term=species distribution, sequence orphan, uncharacterised; date=20100227 ||| term=species distribution, identified in S. pombe only; date=20100227 ||| term=species distribution, no apparent orthologs; date=20100227" ; colour "8" ; gene "SPCC1884.01" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 519505 522642 . + . mRNA SPCC10H11.01 ; systematic_id "SPCC10H11.01" ; colour "2" ; gene "prp11 ||| SPCC10H11.01" ; Alias "prp11" ; db_xref "SPD:29/29H07" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0005681; spliceosome complex
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YBR237W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:9003295; qualifier=ts; date=20100708" ; primary_name "prp11" ; product "ATP-dependent RNA helicase Prp11" ;
chromosome3 GeneDB mRNA 1649075 1650396 . - . mRNA SPCC663.09c ; db_xref "SPD:40/40B02" ; systematic_id "SPCC663.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YKL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC663.09c" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB mRNA 823679 824372 . + . mRNA SPCC1393.12 ; db_xref "SPD:01/01G11" ; systematic_id "SPCC1393.12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1393.12" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1388762 1392061 . + . mRNA SPCC1281.05 ; systematic_id "SPCC1281.05" ; colour "2" ; gene "rsc7 ||| SPCC1281.05" ; Alias "rsc7" ; db_xref "SPD:18/18F02" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=AT hook protein; qualifier=inferred from context; date=20070523 ||| term=orthologous to S. cerevisiae YMR091C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0016586; RSC complex
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0006338; chromatin remodeling
GO:0032569; specific transcription from RNA polymerase II promoter" ; primary_name "rsc7" ; product "RSC complex subunit Rsc7" ; reserved_name "rsc7" ;
chromosome3 GeneDB mRNA 1771287 1773323 . + . mRNA SPCC1442.03 ; systematic_id "SPCC1442.03" ; colour "7" ; gene "SPCC1450.19 ||| SPCC1442.03" ; Alias "SPCC1450.19" ; db_xref "SPD:18/18A03" ; synonym "SPCC1450.19" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006839; mitochondrial transport
GO:0005215; transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=mitochondrial carrier; date=19700101 ||| term=orthologous to S. cerevisiae YMR166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; primary_name "SPCC1450.19" ; product "mitochondrial ATP-Mg/Pi carrier (predicted)" ;
chromosome3 GeneDB mRNA 1032931 1033480 . - . mRNA SPCC1259.01c ; systematic_id "SPCC1259.01c" ; colour "7" ; gene "rps1802 ||| rps18-2 ||| SPCC1259.01c ||| SPCC825.06c" ; Alias "rps1802" ; db_xref "SPD:05/05B04" ; synonym "rps18-2 ||| SPCC825.06c" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0019843; rRNA binding
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR450W and YML026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1802" ; product "40S ribosomal protein S18 (predicted)" ;
chromosome3 GeneDB mRNA 2396250 2398232 . - . mRNA SPCP1E11.04c ; systematic_id "SPCP1E11.04c" ; colour "2" ; gene "pal1 ||| SPCP1E11.04c" ; db_xref "SPD:24/24G04" ; Alias "pal1" ; GO "GO:0032153; cell division site
GO:0051286; cell tip
GO:0031097; medial ring
GO:0030427; site of polarized growth
GO:0005515; protein binding
GO:0031505; cell wall organization and biogenesis (sensu Fungi)
GO:0008360; regulation of cell shape" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR348C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, Pears And Lemons; db_xref=PMID:15975911; cv=name_description; date=20100126 ||| term=phenotype, cell morphology, pear shaped; db_xref=PMID:15975911; date=20100126 ||| term=phenotype, cell morphology, lemon shaped; db_xref=PMID:15975911; date=20100126" ; primary_name "pal1" ; product "membrane associated protein Pal1" ;
chromosome3 GeneDB mRNA 1732774 1733845 . + . mRNA SPCC1450.04 ; systematic_id "SPCC1450.04" ; colour "2" ; gene "SPCC1450.04 ||| tef5" ; Alias "tef5" ; db_xref "SPD:12/12B07" ; GO "GO:0003746; translation elongation factor activity
GO:0006414; translational elongation
GO:0005853; eukaryotic translation elongation factor 1 complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tef5" ; product "translation elongation factor EF-1 beta subunit (eEF1B)" ;
chromosome3 GeneDB mRNA 684621 685496 . + . mRNA SPCC16C4.22 ; obsolete_name "SPNCRNA.470 ||| SPNG2185" ; db_xref "PMID:18488015" ; systematic_id "SPCC16C4.22" ; controlled_curation "term=histone fold; date=20080102 ||| term=species distribution, orthologs cannot be distinguished; date=20080102 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110" ; colour "10" ; GO "GO:0030528; transcription regulator activity
GO:0006350; transcription" ; gene "SPCC16C4.22" ; product "histone-like transcription factor family (CBF/NF- Y)" ;
chromosome3 GeneDB mRNA 708064 709145 . + . mRNA SPCPJ732.03 ; systematic_id "SPCPJ732.03" ; colour "8" ; gene "meu15 ||| SPCPJ732.03" ; db_xref "SPD:41/41D03" ; Alias "meu15" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; qualifier=predicted; db_xref=PMID:11376151; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103" ; primary_name "meu15" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2221979 2222571 . - . mRNA SPCC1919.08c ; systematic_id "SPCC1919.08c" ; colour "7" ; gene "SPCC1919.08c ||| mrpl33" ; Alias "mrpl33" ; db_xref "SPD:02/02C01" ; GO "GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR286W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl33" ; product "mitochondrial ribosomal protein subunit YmL33 (predicted)" ;
chromosome3 GeneDB mRNA 2069001 2071640 . + . mRNA SPCPB1C11.01 ; systematic_id "SPCPB1C11.01" ; colour "2" ; gene "amt1 ||| SPCPB1C11.01" ; Alias "amt1" ; db_xref "SPD:50/50G08" ; GO "GO:0005887; integral to plasma membrane
GO:0015398; high affinity ammonium transporter activity
GO:0015200; methylammonium transporter activity
GO:0072488; ammonium transmembrane transport
GO:0072499; methylammonium transmembrane transport
GO:0031670; cellular response to nutrient
GO:0001403; invasive growth (sensu Saccharomyces)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:16999738; date=20061024 ||| term=orthologous to S. cerevisiae YNL142W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; primary_name "amt1" ; product "ammonium transporter Amt1" ;
chromosome3 GeneDB mRNA 695960 697482 . + . mRNA SPCC16C4.15 ; systematic_id "SPCC16C4.15" ; colour "7" ; gene "SPCC16C4.15 ||| rml2" ; Alias "rml2" ; db_xref "SPD:15/15E12" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL050C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rml2" ; product "mitochondrial ribosomal protein subunit L2 (predicted)" ;
chromosome3 GeneDB mRNA 2064452 2065781 . + . mRNA SPCC1739.15 ; systematic_id "SPCC1739.15" ; colour "12" ; gene "wtf21 ||| SPCC1739.15" ; Alias "wtf21" ; obsolete_name "wtf3" ; db_xref "SPD:51/51D06" ; synonym "SPCC1739.15" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf21" ; product "wtf element Wtf21" ;
chromosome3 GeneDB mRNA 755257 756225 . + . mRNA SPCC1020.12c ; systematic_id "SPCC1020.12c" ; colour "10" ; db_xref "SPD:13/13A07" ; Alias "xap5" ; synonym "SPCC14G10.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, candidate disease gene for Armfield syndrome ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005634; nucleus" ; primary_name "xap5" ; product "xap-5-like protein" ; reserved_name "xap5" ;
chromosome3 GeneDB mRNA 1969067 1970443 . + . mRNA SPCC18.07 ; systematic_id "SPCC18.07" ; colour "7" ; gene "rpc53 ||| SPCC18.07" ; Alias "rpc53" ; db_xref "SPD:14/14E04" ; GO "GO:0006383; transcription from RNA polymerase III promoter
GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL150W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpc53" ; product "DNA-directed RNA polymerase III complex subunit Rpc53 (predicted)" ;
chromosome3 GeneDB mRNA 1655669 1656679 . + . mRNA SPCC663.12 ; systematic_id "SPCC663.12" ; colour "2" ; gene "cid12 ||| SPCC663.12" ; Alias "cid12" ; db_xref "SPD:15/15A07" ; GO "GO:0031379; RNA-directed RNA polymerase complex
GO:0031380; nuclear RNA-directed RNA polymerase complex
GO:0005634; nucleus
GO:0005681; spliceosome complex
GO:0004652; polynucleotide adenylyltransferase activity
GO:0000077; DNA damage checkpoint
GO:0000077; DNA damage checkpoint
GO:0043631; RNA polyadenylation
GO:0051315; attachment of spindle microtubules to kinetochore during mitosis
GO:0030702; chromatin silencing at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0007094; mitotic spindle checkpoint
GO:0031134; sister chromatid biorientation
GO:0031048; small RNA-mediated chromatin silencing
GO:0031048; small RNA-mediated chromatin silencing
GO:0031048; small RNA-mediated chromatin silencing" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=phenotype, sensitive to caffeine; qualifier=deletion; cv=phenotype; date=20060207 ||| term=phenotype, sensitive to HU; qualifier=deletion; cv=phenotype; date=20060207 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "cid12" ; product "poly(A) polymerase Cid12" ;
chromosome3 GeneDB mRNA 2076868 2078958 . + . mRNA SPCPB1C11.03 ; db_xref "SPD:49/49B06" ; systematic_id "SPCPB1C11.03" ; colour "7" ; GO "GO:0042883; cysteine transport
GO:0033229; cysteine transmembrane transporter activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL055W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCPB1C11.03" ; product "cysteine transporter (predicted)" ;
chromosome3 GeneDB mRNA 1892097 1893362 . + . mRNA SPCC737.04 ; db_xref "SPD:20/20C07" ; systematic_id "SPCC737.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "12" ; gene "SPCC737.04" ; product "S. pombe specific UPF0300 family protein 6" ;
chromosome3 GeneDB mRNA 2139883 2141271 . - . mRNA SPCC126.13c ; db_xref "SPD:42/42D07" ; systematic_id "SPCC126.13c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SAP18 ortholog; date=20100614" ; GO "GO:0000118; histone deactylase complex
GO:0006350; transcription
GO:0016575; histone deactylation
GO:0000790; nuclear chromatin" ; gene "SPCC126.13c" ; product "histone deacetylase complex subunit, SAP128 family (predicted)" ;
chromosome3 GeneDB mRNA 2041225 2042655 . + . mRNA SPCC1739.07 ; systematic_id "SPCC1739.07" ; colour "2" ; db_xref "SPD:03/03B01" ; Alias "cti1" ; GO "GO:0000176; nuclear exosome (RNase complex)
GO:0031123; RNA 3'-end processing
GO:0000466; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU- rRNA)
GO:0016180; snRNA processing
GO:0043144; snoRNA processing
GO:0005515; protein binding
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005730; nucleolus
GO:0061013; nuclear-transcribed mRNA catabolism" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR081W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, condensin subunit CuT3 Interacting protein; db_xref=PMID:15148393; date=20100212 ||| term=human C1D ortholog; db_xref=PMID:15148393; date=20100212 ||| term=phenotype, inviable; db_xref=PMID:15148393; cv=phenotype; date=20100212" ; primary_name "cti1" ; product "Cut3 interacting protein Cti1, predicted exosome subunit" ;
chromosome3 GeneDB mRNA 1214010 1216438 . + . mRNA SPCC550.13 ; systematic_id "SPCC550.13" ; colour "2" ; gene "dfp1 ||| rad35 ||| him1 ||| SPCC550.13" ; Alias "dfp1" ; db_xref "SPD:26/26B07" ; synonym "rad35 ||| him1" ; GO "GO:0031431; Dbf4-dependent protein kinase complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0046982; protein heterodimerization activity
GO:0019887; protein kinase regulator activity
GO:0000077; DNA damage checkpoint
GO:0033314; mitotic cell cycle DNA replication checkpoint
GO:0006270; DNA replication initiation
GO:0045859; regulation of protein kinase activity
GO:0048478; replication fork protection
GO:0006974; response to DNA damage stimulus
GO:0007165; signal transduction
GO:0007064; mitotic sister chromatid cohesion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10409743; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion|low_penetrance; db_xref=PMID:10409743; date=20100709 ||| term=phenotype, nuclear morphology defects; qualifier=deletion; db_xref=PMID:10409743; date=20100709 ||| term=phenotype, cut; db_xref=PMID:10409743; date=20100727 ||| term=BRCT domain; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-DBF type; date=19700101 ||| term=gene expression, expression cell cycle regulated; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YDR052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213" ; primary_name "dfp1" ; product "Hsk1-Dfp1 kinase complex regulatory subunit Dfp1" ;
chromosome3 GeneDB mRNA 1323844 1325076 . + . mRNA SPCC1322.16 ; systematic_id "SPCC1322.16" ; colour "7" ; gene "SPCC1322.16 ||| phb2" ; note "may use Met at upstream MNRQ" ; Alias "phb2" ; db_xref "SPD:43/43H06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR231C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; db_xref=PMID:21270388; date=20110131" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006457; protein folding" ; primary_name "phb2" ; product "prohibitin Phb2 (predicted)" ;
chromosome3 GeneDB mRNA 637461 639571 . - . mRNA SPCC31H12.08c ; systematic_id "SPCC31H12.08c" ; colour "2" ; gene "ccr4 ||| SPCC31H12.08c ||| SPCC5E4.02c" ; Alias "ccr4" ; db_xref "SPD:46/46E03" ; synonym "SPCC5E4.02c" ; GO "GO:0006354; RNA elongation
GO:0030015; CCR4-NOT core complex
GO:0000289; poly(A) tail shortening
GO:0000175; 3'-5'-exoribonuclease activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL021C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=leucine-rich repeat protein; date=20100727" ; primary_name "ccr4" ; product "CCR4-Not complex subunit Ccr4 (predicted)" ;
chromosome3 GeneDB mRNA 1626088 1629385 . - . mRNA SPCC663.01c ; systematic_id "SPCC663.01c" ; colour "2" ; gene "ekc1 ||| SPCC777.16c ||| SPCC663.01c" ; Alias "ekc1" ; obsolete_name "eck1" ; db_xref "SPD:38/38D12" ; synonym "SPCC777.16c" ; GO "GO:0051983; regulation of chromosome segregation
GO:0005515; protein binding
GO:0005721; centric heterochromatin" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR040W and YGL229C and YKR028W and YJL098W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Extragenic suppressor of KinetoChore; cv=name_description; db_xref=PMID:12773390; date=20090427 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "ekc1" ; product "protein phosphatase regulatory subunit Ekc1 (predicted)" ;
chromosome3 GeneDB mRNA 730982 733235 . - . mRNA SPCC18B5.07c ; systematic_id "SPCC18B5.07c" ; colour "2" ; gene "nup61 ||| SPCC18B5.07c" ; Alias "nup61" ; db_xref "SPD:45/45G06" ; GO "GO:0005643; nuclear pore
GO:0006913; nucleocytoplasmic transport
GO:0031965; nuclear membrane
GO:0007094; mitotic spindle checkpoint" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=FG repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YLR335W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "nup61" ; product "nucleoporin Nup61" ;
chromosome3 GeneDB mRNA 2161331 2163123 . - . mRNA SPCC1620.09c ; systematic_id "SPCC1620.09c" ; colour "7" ; gene "tfg1 ||| SPCC1620.09c" ; Alias "tfg1" ; db_xref "SPD:45/45C08" ; GO "GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity
GO:0005674; transcription factor TFIIF complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR186W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tfg1" ; product "transcription factor TFIIF complex alpha subunit Tfg1 (predicted)" ;
chromosome3 GeneDB mRNA 1699739 1701301 . + . mRNA SPCC417.12 ; db_xref "SPD:25/25C02" ; systematic_id "SPCC417.12" ; colour "10" ; GO "GO:0004091; carboxylesterase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC417.12" ; product "carboxylesterase-lipase family protein" ;
chromosome3 GeneDB mRNA 799456 800885 . + . mRNA SPCC1393.04 ; systematic_id "SPCC1393.04" ; colour "2" ; gene "SPCC1393.04" ; Alias "fta4" ; db_xref "SPD:09/09F06" ; synonym "sma4" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000776; kinetochore" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, sim Four and mal Two Associated protein; cv=name_description; db_xref=PMID:16079914; date=20091106 ||| term=species distribution, conserved in Fungi; date=20100723 ||| term=species distribution, conserved in Eukaryotes; date=20100723 ||| term=species distribution, conserved in Fungi only; date=20100723 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100723" ; primary_name "fta4" ; product "Sim4 and Mal2 associated (4 and 2 associated) protein 4" ;
chromosome3 GeneDB mRNA 510210 511531 . - . mRNA SPCC970.03 ; db_xref "SPD:12/12E03" ; systematic_id "SPCC970.03" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL043C and YML125C and YML087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0050660; FAD binding
GO:0051287; NAD binding
GO:0004128; cytochrome-b5 reductase activity
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport" ; gene "SPCC970.03" ; product "cytochrome b5 reductase (predicted)" ; EC_number "1.6.2.2" ;
chromosome3 GeneDB mRNA 1834592 1837176 . + . mRNA SPCC1223.01 ; systematic_id "SPCC1223.01" ; colour "7" ; gene "SPCC285.18 ||| SPCC1223.01" ; Alias "SPCC285.18" ; db_xref "SPD:46/46G09" ; synonym "SPCC285.18" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C2H2 type; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=orthologous to S. cerevisiae YDR266C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "SPCC285.18" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome3 GeneDB mRNA 324921 327225 . - . mRNA SPCC736.07c ; db_xref "SPD:37/37G09" ; systematic_id "SPCC736.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFL023W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0001731; formation of translation preinitiation complex" ; gene "SPCC736.07c" ; product "unconventional prefoldin involved in translation initiation (predicted)" ;
chromosome3 GeneDB mRNA 416164 417647 . - . mRNA SPCC306.05c ; systematic_id "SPCC306.05c" ; colour "2" ; gene "ins1 ||| SPCC306.05c" ; Alias "ins1" ; db_xref "SPD:18/18C02" ; GO "GO:0032936; SREBP-SCAP complex
GO:0071458; endoplasmic reticulum membrane, cytosolic_side
GO:0006994; activation of transcription in response to sterol depletion
GO:0071456; cellular response to hypoxia
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0006992; sterol depletion response, sterol regulatory element binding-protein cleavage
GO:0005515; protein binding
GO:0010895; negative regulation of ergosterol biosynthetic process
GO:0035437; maintenance of protein localization in endoplasmic reticulum" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, increased HMG-CoA reductase activity; db_xref=PMID:19041767; cv=phenotype; qualifier=deletion; date=20090206" ; primary_name "ins1" ; product "INSIG domain protein" ;
chromosome3 GeneDB mRNA 1802140 1803792 . + . mRNA SPCC285.05 ; db_xref "SPD:16/16A02" ; systematic_id "SPCC285.05" ; colour "7" ; GO "GO:0015211; purine nucleoside transmembrane transporter activity
GO:0035427; purine nucleoside transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi only; date=20100824" ; gene "SPCC285.05" ; product "purine nucleoside transmembrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 900382 903350 . + . mRNA SPCC16A11.17 ; systematic_id "SPCC16A11.17" ; colour "2" ; gene "cdc21 ||| mcm4 ||| SPCC16A11.17 ||| SPCC24B10.01" ; note "possibly spliced at C-term" ; Alias "cdc21" ; db_xref "SPD:47/47B07" ; synonym "mcm4 ||| SPCC24B10.01" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=ts; cv=phenotype; db_xref=PMID:6943408; date=20100705 ||| term=orthologous to S. cerevisiae YPR019W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0031261; DNA replication preinitiation complex
GO:0042555; MCM complex
GO:0005656; pre-replicative complex
GO:0004003; ATP-dependent DNA helicase activity
GO:0006270; DNA replication initiation
GO:0006270; DNA replication initiation
GO:0006271; DNA strand elongation during DNA replication
GO:0007090; regulation of S-phase of mitotic cell cycle
GO:0031390; nuclear replication fork" ; primary_name "cdc21" ; product "MCM complex subunit Cdc21" ;
chromosome3 GeneDB mRNA 2129831 2131043 . - . mRNA SPCC126.08c ; db_xref "SPD:43/43F04" ; systematic_id "SPCC126.08c" ; colour "7" ; GO "GO:0006888; ER to Golgi vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC126.08c" ; product "lectin family glycoprotien receptor (predicted)" ;
chromosome3 GeneDB mRNA 514906 518076 . - . mRNA SPCC970.01 ; systematic_id "SPCC970.01" ; colour "2" ; db_xref "SPD:47/47F11" ; Alias "rad16" ; synonym "rad10 ||| rad20 ||| swi9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:8769419; date=20100730 ||| term=orthologous to S. cerevisiae YPL022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20090908 ||| term=human ERCC4 ortholog; date=20100217" ; GO "GO:0000109; nucleotide-excision repair complex
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0046982; protein heterodimerization activity
GO:0000014; single-stranded DNA specific endodeoxyribonuclease activity
GO:0007534; gene conversion at mating-type locus
GO:0006311; meiotic gene conversion
GO:0006296; nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006289; nucleotide-excision repair" ; primary_name "rad16" ; product "DNA repair endonuclease XPF" ; EC_number "3.1.-.-" ;
chromosome3 GeneDB mRNA 997511 998839 . + . mRNA SPCC1795.01c ; systematic_id "SPCC1795.01c" ; colour "2" ; db_xref "SPD:13/13A10" ; Alias "mad3" ; synonym "SPCC895.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11909965; date=19700101 ||| term=orthologous to S. cerevisiae YJL013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=human BUB1 and BUB1B ortholog; date=20100217 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0033597; mitotic checkpoint complex
GO:0010997; anaphase-promoting complex binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0060565; inhibition of anaphase promoting complex activity during mitotic cell cycle
GO:0007094; mitotic spindle checkpoint
GO:0007094; mitotic spindle checkpoint
GO:0045841; negative regulation of mitotic metaphase/anaphase transition
GO:0051444; negative regulation of ubiquitin ligase activity" ; primary_name "mad3" ; product "mitotic spindle checkpoint protein Mad3" ;
chromosome3 GeneDB mRNA 757344 757861 . + . mRNA SPCC1020.11c ; db_xref "SPD:01/01E12" ; systematic_id "SPCC1020.11c" ; GO "GO:0005783; ER membrane protein complex
GO:0034975; protein folding in the endoplasmic reticulum" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL014W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; gene "SPCC1020.11c" ; product "ER membrane protein complex subunit 6 (predicted)" ;
chromosome3 GeneDB mRNA 742971 747813 . + . mRNA SPCC14G10.02 ; systematic_id "SPCC14G10.02" ; colour "7" ; gene "SPCC18B5.13 ||| SPCC14G10.02" ; Alias "SPCC18B5.13" ; db_xref "SPD:31/31A03" ; synonym "SPCC18B5.13" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL014C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "SPCC18B5.13" ; product "ribosome biogenesis protein Urb1 (predicted)" ;
chromosome3 GeneDB mRNA 854510 856439 . - . mRNA SPCC63.10c ; systematic_id "SPCC63.10c" ; colour "7" ; db_xref "SPD:25/25C01" ; Alias "sec59" ; GO "GO:0005789; endoplasmic reticulum membrane
GO:0004168; dolichol kinase activity
GO:0006487; protein amino acid N-linked glycosylation
GO:0030176; integral to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR013C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec59" ; product "dolichol kinase Sec59 (predicted)" ;
chromosome3 GeneDB mRNA 2316172 2317765 . + . mRNA SPCC1494.01 ; systematic_id "SPCC1494.01" ; colour "10" ; gene "SPCC1494.01 ||| SPCC965.15" ; db_xref "SPD:14/14H03" ; synonym "SPCC965.15" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; product "iron/ascorbate oxidoreductase family" ;
chromosome3 GeneDB mRNA 1230674 1231827 . - . mRNA SPCC645.03c ; systematic_id "SPCC645.03c" ; colour "2" ; gene "isa1 ||| SPCC645.03c" ; Alias "isa1" ; db_xref "SPD:42/42G08" ; GO "GO:0005759; mitochondrial matrix
GO:0016226; iron-sulfur cluster assembly
GO:0006790; sulfur metabolism
GO:0006879; iron ion homeostasis
GO:0009102; biotin biosynthetic process" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by CCAAT complex; db_xref=PMID:16963626; evidence=IMP; cv=gene_ex; date=20070516 ||| term=gene expression, promoter contains CCAAT element; db_xref=PMID:16963626; evidence=IMP; cv=gene_ex; date=20070516 ||| term=orthologous to S. cerevisiae YLL027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "isa1" ; product "mitochondrial iron-sulfur protein Isa1" ;
chromosome3 GeneDB mRNA 60428 60694 . - . mRNA SPCC757.15 ; db_xref "PMID:18488015" ; systematic_id "SPCC757.15" ; controlled_curation "term=species distribution, sequence orphan; date=20080102 ||| term=warning, new gene; db_xref=PMID:18488015; cv=warning; date=20080513 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC757.15" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2131757 2134067 . + . mRNA SPCC126.09 ; db_xref "SPD:20/20B03" ; systematic_id "SPCC126.09" ; colour "7" ; GO "GO:0006882; zinc ion homeostasis
GO:0000329; vacuolar membrane
GO:0006829; zinc ion transport
GO:0005385; zinc ion transporter activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL175W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC126.09" ; product "vacuolar membrane zinc transporter (predicted)" ;
chromosome3 GeneDB mRNA 1471480 1473462 . - . mRNA SPCC11E10.09c ; systematic_id "SPCC11E10.09c" ; colour "7" ; gene "SPCC11E10.09c ||| SPCC188.01c" ; db_xref "SPD:51/51E01" ; synonym "SPCC188.01c" ; GO "GO:0009986; cell surface
GO:0004556; alpha-amylase activity
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; product "alpha-amylase homolog (predicted)" ; EC_number "3.2.1.1" ;
chromosome3 GeneDB mRNA 1397232 1398716 . - . mRNA SPCC1281.07c ; db_xref "SPD:13/13C01" ; systematic_id "SPCC1281.07c" ; colour "7" ; GO "GO:0004364; glutathione transferase activity
GO:0033554; cellular response to stress" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR251W and YGR154c and YKR076W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPCC1281.07c" ; product "glutathione S-transferase Gst3 (predicted)" ;
chromosome3 GeneDB mRNA 2117128 2119548 . - . mRNA SPCC126.02c ; systematic_id "SPCC126.02c" ; colour "2" ; gene "pku70 ||| SPCC126.02c" ; Alias "pku70" ; db_xref "SPD:37/37D11" ; GO "GO:0006303; double-strand break repair via nonhomologous end joining
GO:0000084; S phase of mitotic cell cycle
GO:0000781; chromosome, telomeric region
GO:0042162; telomeric DNA binding
GO:0000723; telomere maintenance
GO:0046982; protein heterodimerization activity
GO:0004003; ATP-dependent DNA helicase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SAP domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YMR284W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pku70" ; product "Ku domain protein Pku70" ;
chromosome3 GeneDB mRNA 2314798 2315402 . + . mRNA SPCC965.14c ; db_xref "SPD:04/04F08" ; systematic_id "SPCC965.14c" ; colour "7" ; GO "GO:0008270; zinc ion binding
GO:0004131; cytosine deaminase activity
GO:0019858; cytosine metabolism
GO:0008655; pyrimidine salvage
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR062W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC965.14c" ; product "cytosine deaminase (predicted)" ;
chromosome3 GeneDB mRNA 1672003 1672364 . + . mRNA SPCC417.03 ; db_xref "SPD:02/02D12" ; systematic_id "SPCC417.03" ; colour "6" ; gene "SPCC417.03" ; product "dubious" ;
chromosome3 GeneDB mRNA 316061 318646 . - . mRNA SPCC736.04c ; systematic_id "SPCC736.04c" ; colour "2" ; gene "gma12 ||| SPCC736.04c" ; Alias "gma12" ; db_xref "SPD:17/17G02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:7522655; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR245W and YJL183W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0042125; protein amino acid galactosylation
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0006493; protein amino acid O-linked glycosylation
GO:0006487; protein amino acid N-linked glycosylation
GO:0000139; Golgi membrane
GO:0031278; alpha-1,2-galactosyltransferase activity" ; primary_name "gma12" ; product "alpha-1,2-galactosyltransferase Gma12" ; EC_number "2.4.1.-" ;
chromosome3 GeneDB mRNA 223333 223860 . + . mRNA SPCC548.04 ; systematic_id "SPCC548.04" ; colour "7" ; gene "SPCC548.04 ||| urm1" ; Alias "urm1" ; db_xref "SPD:04/04C07" ; GO "GO:0031386; protein tag
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0032447; protein urmylation" ; controlled_curation "term=ubiquitin family protein; date=19700101 ||| term=orthologous to S. cerevisiae YIL008W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090223" ; primary_name "urm1" ; product "ubiquitin family protein Urm1 (predicted)" ;
chromosome3 GeneDB mRNA 496130 499874 . - . mRNA SPCC970.08 ; db_xref "SPD:29/29G01" ; systematic_id "SPCC970.08" ; colour "7" ; GO "GO:0000827; inositol 1,3,4,5,6-pentakisphosphate kinase activity
GO:0000829; inositol heptakisphosphate kinase activity
GO:0046853; inositol and derivative phosphorylation
GO:0032958; inositol phosphate biosynthetic process
GO:0048016; inositol phosphate-mediated signaling
GO:0006797; polyphosphate metabolism" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC970.08" ; product "inositol polyphosphate kinase (predicted)" ;
chromosome3 GeneDB mRNA 1789586 1791195 . + . mRNA SPCC1442.12 ; systematic_id "SPCC1442.12" ; colour "2" ; gene "SPCC1442.12 ||| pps1" ; Alias "pps1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00561; ||| SPD:17/17F08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17905925; date=20080114 ||| term=orthologous to S. cerevisiae YER026C; date=19700101 ||| term=modification, phosphorylated; evidence=ISS; with=SGD:S000000828; cv=pt_mod; date=20100212 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Vertebrates; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; GO "GO:0005737; cytoplasm
GO:0005789; endoplasmic reticulum membrane
GO:0003882; CDP-diacylglycerol-serine O- phosphatidyltransferase activity
GO:0003882; CDP-diacylglycerol-serine O- phosphatidyltransferase activity
GO:0070317; maintenance of G0 arrest?
GO:0031505; cell wall organization and biogenesis
GO:0010512; negative regulation of phosphatidylinositol biosynthetic process
GO:0006646; phosphatidylethanolamine biosynthetic process
GO:0006659; phosphatidylserine biosynthesis
GO:0032956; regulation of actin cytoskeleton organization and biogenesis
GO:0071775; regulation of cell cycle cytokinesis
GO:0030176; integral to endoplasmic reticulum membrane
GO:0070317; negative regulation of G1 to G0 transition" ; primary_name "pps1" ; product "phosphatidylserine synthase Pps1" ; EC_number "2.7.8.8" ;
chromosome3 GeneDB mRNA 793179 796211 . + . mRNA SPCC1020.01c ; systematic_id "SPCC1020.01c" ; colour "2" ; gene "pma2 ||| SPCC1020.01c ||| SPCC1393.01" ; Alias "pma2" ; db_xref "SPD:29/29H03" ; synonym "SPCC1393.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL036W; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005886; plasma membrane
GO:0006885; regulation of pH
GO:0015992; proton transport
GO:0008553; hydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0005524; ATP binding" ; primary_name "pma2" ; product "P-type proton ATPase, P3-type Pma2" ;
chromosome3 GeneDB mRNA 127245 129392 . + . mRNA SPCC330.09 ; db_xref "SPD:46/46B05" ; systematic_id "SPCC330.09" ; colour "7" ; GO "GO:0006364; rRNA processing
GO:0005730; nucleolus
GO:0042274; ribosome small subunit biogenesis
GO:0030686; 90S preribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR145W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC330.09" ; product "rRNA processing protein Enp2 (predicted)" ;
chromosome3 GeneDB mRNA 2401980 2404723 . + . mRNA SPCP1E11.06 ; systematic_id "SPCP1E11.06" ; colour "2" ; gene "apl4 ||| SPCP1E11.06" ; Alias "apl4" ; db_xref "SPD:38/38E09" ; GO "GO:0030276; clathrin binding
GO:0016197; endosome transport
GO:0030121; AP-1 adaptor complex
GO:0005794; Golgi apparatus
GO:0005768; endosome
GO:0006886; intracellular protein transport
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=adaptin family; date=19700101 ||| term=orthologous to S. cerevisiae YPR029C; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, sensitive to valproic acid; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=phenotype, sensitive to FK605; db_xref=PMID:19624755; cv=phenotype; date=20090817 ||| term=warning, multiple translational start sites possible; date=20100715" ; primary_name "apl4" ; product "AP-1 adaptor complex gamma subunit Apl4" ;
chromosome3 GeneDB mRNA 1863685 1864869 . + . mRNA SPCC1223.11 ; systematic_id "SPCC1223.11" ; colour "2" ; gene "ptc2 ||| SPCC1223.11" ; Alias "ptc2" ; db_xref "SPD:17/17E08" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER089C and YBL056W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Protein Phosphatase 2C homolog; date=20101124" ; GO "GO:0006470; protein amino acid dephosphorylation
GO:0006970; response to osmotic stress
GO:0004722; protein phosphatase type 2C activity
GO:0000173; inactivation of MAPK activity during osmolarity sensing
GO:0030968; unfolded protein response" ; primary_name "ptc2" ; product "protein phosphatase 2C Ptc2" ; EC_number "3.1.3.16" ;
chromosome3 GeneDB mRNA 2336577 2341298 . + . mRNA SPCC1494.07 ; db_xref "SPD:30/30H08" ; systematic_id "SPCC1494.07" ; colour "10" ; GO "GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=HEAT repeat; date=19700101 ||| term=orthologous to S. cerevisiae YMR259C; date=19700101 ||| term=human THADA ortholog; date=20080428 ||| term=disease associated, thyroid adenoma; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100204" ; gene "SPCC1494.07" ; product "human THADA ortholog" ;
chromosome3 GeneDB mRNA 94686 96225 . + . mRNA SPCC613.09 ; systematic_id "SPCC613.09" ; colour "7" ; gene "sen54 ||| SPCC613.09" ; Alias "sen54" ; db_xref "SPD:22/22F01" ; GO "GO:0005741; mitochondrial outer membrane
GO:0000214; tRNA-intron endonuclease complex
GO:0000213; tRNA-intron endonuclease activity
GO:0000379; tRNA-type intron splice site recognition and cleavage" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL083C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sen54" ; product "tRNA-splicing endonuclease subunit Sen54 (predicted)" ;
chromosome3 GeneDB mRNA 1366181 1367640 . + . mRNA SPCC338.05c ; systematic_id "SPCC338.05c" ; colour "2" ; gene "mms2 ||| spm2 ||| SPCC338.05c" ; Alias "mms2" ; db_xref "SPD:11/11D03" ; synonym "spm2" ; GO "GO:0005515; protein binding
GO:0006301; postreplication repair
GO:0004842; ubiquitin conjugating enzyme activity
GO:0016567; protein ubiquitination
GO:0042803; protein homodimerization activity
GO:0006301; postreplication repair
GO:0006301; postreplication repair
GO:0006301; postreplication repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL087C; date=19700101 ||| term=complementation, functionally complements S. cerevisiae MMS2; db_xref=PMID:12531016; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mms2" ; product "ubiquitin conjugating enzyme Mms2" ;
chromosome3 GeneDB mRNA 1292109 1293774 . + . mRNA SPCC1322.04 ; db_xref "SPD:24/24F10" ; systematic_id "SPCC1322.04" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL035W and YHL012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; GO "GO:0003983; UTP:glucose-1-phosphate uridylyltransferase activity
GO:0006011; UDP-glucose metabolism
GO:0005737; cytoplasm" ; gene "SPCC1322.04" ; product "UTP-glucose-1-phosphate uridylyltransferase (predicted)" ; EC_number "2.7.7.9" ;
chromosome3 GeneDB mRNA 2024451 2027971 . + . mRNA SPCC1739.01 ; systematic_id "SPCC1739.01" ; colour "10" ; gene "SPCC1906.05 ||| SPCC1739.01" ; Alias "SPCC1906.05" ; db_xref "SPD:36/36A10" ; synonym "SPCC1906.05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCCH type; date=19700101 ||| term=orthologous to S. cerevisiae YPL054W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPCC1906.05" ; product "zf-CCCH type zinc finger protein" ;
chromosome3 GeneDB mRNA 421703 422870 . - . mRNA SPCC306.08c ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00620; ||| KEGG:MAP00630; ||| KEGG:MAP00710; ||| KEGG:MAP00720; ||| SPD:15/15E01" ; systematic_id "SPCC306.08c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL085W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006108; malate metabolism
GO:0006099; tricarboxylic acid cycle
GO:0030060; L-malate dehydrogenase activity
GO:0005759; mitochondrial matrix" ; gene "SPCC306.08c" ; product "malate dehydrogenase (predicted)" ; EC_number "1.1.1.37" ;
chromosome3 GeneDB mRNA 2302475 2305171 . + . mRNA SPCC965.10 ; db_xref "SPD:25/25D08" ; systematic_id "SPCC965.10" ; colour "7" ; GO "GO:0005634; nucleus
GO:0003677; DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0008270; zinc ion binding
GO:0006355; regulation of transcription, DNA- dependent" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YDL170W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC965.10" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB mRNA 1648000 1648761 . - . mRNA SPCC663.08c ; db_xref "SPD:40/40B01" ; systematic_id "SPCC663.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YKL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC663.08c" ; product "short chain dehydrogenase" ;
chromosome3 GeneDB mRNA 158577 159503 . - . mRNA SPCC320.06 ; db_xref "SPD:12/12H12" ; systematic_id "SPCC320.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20081110 ||| term=species distribution, conserved in Fungi; date=20090410 ||| term=species distribution, conserved in Fungi only; date=20090410" ; colour "10" ; gene "SPCC320.06" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 1516197 1518230 . + . mRNA SPCC584.13 ; db_xref "SPD:26/26B04" ; systematic_id "SPCC584.13" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPCC584.13" ; product "amino acid permease (predicted)" ;
chromosome3 GeneDB mRNA 651622 652455 . - . mRNA SPCC5E4.10c ; db_xref "SPD:02/02F05" ; systematic_id "SPCC5E4.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, conserved in Fungi; date=20100319 ||| term=human LENG1 ortholog; date=20100319 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20100319 ||| term=species distribution, conserved in Metazoa; date=20100319 ||| term=species distribution, conserved in Vertebrates; date=20100319 ||| term=species distribution, conserved in Eukaryotes only; date=20100319 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100319 ||| term=warning, gene structure updated; cv=warning; date=20100319" ; colour "10" ; gene "SPCC5E4.10c" ; product "human leukocyte receptor 1 ortholog" ;
chromosome3 GeneDB mRNA 1855307 1857056 . + . mRNA SPCC1223.08c ; systematic_id "SPCC1223.08c" ; colour "2" ; gene "dfr1 ||| SPCC1223.08c" ; note "SPCC1223.08 has DUF341 N-terminal domain which is absent from other orthologs, and more similar to S. pombe SPAC22A12.06c than S. cerevisiae DUF341 domain proteins" ; Alias "dfr1" ; db_xref "SPD:25/25E11" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR236W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004146; dihydrofolate reductase activity
GO:0009165; nucleotide biosynthesis
GO:0006545; glycine biosynthesis
GO:0006760; folic acid and derivative metabolism
GO:0005829; cytosol" ; primary_name "dfr1" ; product "dihydrofolate reductase Dfr1" ; EC_number "1.5.1.3" ;
chromosome3 GeneDB mRNA 386020 388386 . - . mRNA SPCC1682.08c ; systematic_id "SPCC1682.08c" ; colour "10" ; gene "mcp2 ||| SPCC1682.08c" ; Alias "mcp2" ; db_xref "SPD:27/27H11" ; GO "GO:0003723; RNA binding
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=similar to N. crassa B17C10.150; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mcp2" ; product "RNA-binding protein Mcp2" ; reserved_name "mcp2" ;
chromosome3 GeneDB mRNA 579220 580386 . - . mRNA SPCC1672.08c ; systematic_id "SPCC1672.08c" ; colour "2" ; gene "tfa2 ||| SPCC1672.08c" ; Alias "tfa2" ; db_xref "SPD:11/11D09" ; GO "GO:0005673; transcription factor TFIIE complex
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016251; general RNA polymerase II transcription factor activity
GO:0051290; protein heterotetramerization
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15743411; date=19700101 ||| term=fork head domain; db_xref=PMID:15743411; date=19700101 ||| term=orthologous to S. cerevisiae YKR062W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "tfa2" ; product "transcription factor TFIIE beta subunit, TFIIEB, Tfa2" ;
chromosome3 GeneDB mRNA 457795 459466 . - . mRNA SPCC4G3.08 ; systematic_id "SPCC4G3.08" ; colour "2" ; gene "psk1 ||| SPCC4G3.08" ; Alias "psk1" ; db_xref "SPD:50/50A06" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR028C; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "psk1" ; product "serine/threonine protein kinase Psk1" ;
chromosome3 GeneDB mRNA 1673314 1673856 . + . mRNA SPCC417.04 ; db_xref "SPD:05/05E07" ; systematic_id "SPCC417.04" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC417.04" ; product "dubious" ;
chromosome3 GeneDB mRNA 1412387 1413621 . + . mRNA SPCC622.09 ; systematic_id "SPCC622.09" ; colour "2" ; gene "htb1 ||| SPCC622.09" ; db_xref "SPD:02/02G12" ; Alias "htb1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBL002W and YDR224C; date=19700101 ||| term=modification, ubiquitinated; residue=K119; cv=pt_mod; db_xref=PMID:17374714; evidence=IDA; date=20070716 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, ubiquitinated; cv=pt_mod; date=20100311" ; primary_name "htb1" ; product "histone H2B Htb1" ;
chromosome3 GeneDB mRNA 1411257 1412137 . - . mRNA SPCC622.08c ; Alias "hta1" ; systematic_id "SPCC622.08c" ; colour "2" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YBL003C and YDR225W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; residue=S129; db_xref=PMID:15226425; date=20090213 ||| term=target of Bub1; qualifier=phosphorylated_by; db_xref=PMID:19965387; date=20101116" ; GO "GO:0042770; DNA damage response, signal transduction
GO:0006975; DNA damage induced protein phosphorylation
GO:0034501; protein localization to kinetochore
GO:0034501; protein localization to kinetochore" ; gene "hta1 ||| SPCC622.08c" ; primary_name "hta1" ; product "histone H2A alpha" ;
chromosome3 GeneDB mRNA 32624 33393 . + . mRNA SPCP20C8.03 ; systematic_id "SPCP20C8.03" ; pseudo "_no_value" ; controlled_curation "term=warning, frameshifted; date=20091230" ; colour "13" ; gene "SPCP20C8.03" ; product "pseudogene (predicted)" ;
chromosome3 GeneDB mRNA 262764 264691 . + . mRNA SPCC794.07 ; systematic_id "SPCC794.07" ; colour "7" ; gene "SPCC794.07" ; Alias "lat1" ; db_xref "KEGG:MAP00010; ||| KEGG:MAP00620; ||| SPD:25/25E12" ; GO "GO:0006086; acetyl-CoA biosynthesis from pyruvate
GO:0004742; dihydrolipoyllysine-residue acetyltransferase activity
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, lactic acidosis; date=20080101 ||| term=disease associated, maple syrup urine disease type II; date=20080101 ||| term=orthologous to S. cerevisiae YNL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, lipoylated; qualifier=predicted; evidence=ISS; cv=pt_mod; date=20100305" ; primary_name "lat1" ; product "dihydrolipoamide S-acetyltransferase E2, Lat1 (predicted)" ; EC_number "2.3.1.12" ;
chromosome3 GeneDB mRNA 155906 158191 . + . mRNA SPCC320.07c ; systematic_id "SPCC320.07c" ; colour "2" ; gene "mde7 ||| SPCC320.07c" ; Alias "mde7" ; db_xref "SPD:46/46G08" ; GO "GO:0003723; RNA binding
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YNL197C and YDL224C; date=19700101 ||| term=gene expression, transcriptionally regulated by Mei4; cv=gene_ex; date=20080612 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mde7" ; product "RNA-binding protein Mde7" ;
chromosome3 GeneDB mRNA 1311652 1312367 . + . mRNA SPCC1322.11 ; systematic_id "SPCC1322.11" ; colour "2" ; gene "rpl2302 ||| rpl23-2 ||| SPCC1322.11" ; Alias "rpl2302" ; db_xref "SPD:41/41E03" ; synonym "rpl23-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL087C and YER117W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl2302" ; product "60S ribosomal protein L23" ;
chromosome3 GeneDB mRNA 727030 728013 . - . mRNA SPCC18B5.05c ; systematic_id "SPCC18B5.05c" ; colour "7" ; gene "SPCC18B5.05c" ; note "Other S. pombe and S. cerevisiae phosphomethylpyrimidine kinases have additional TENA/THI domain" ; db_xref "SPD:14/14C05" ; GO "GO:0009228; thiamin biosynthesis
GO:0008972; phosphomethylpyrimidine kinase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101" ; product "phosphomethylpyrimidine kinase (predicted)" ; EC_number "2.7.4.7" ;
chromosome3 GeneDB mRNA 1728823 1731246 . + . mRNA SPCC1450.02 ; systematic_id "SPCC1450.02" ; colour "2" ; gene "bdf1 ||| brf1 ||| SPCC191.13 ||| SPCC1450.02" ; Alias "bdf1" ; db_xref "SPD:35/35H03" ; synonym "brf1 ||| SPCC191.13" ; GO "GO:0006338; chromatin remodeling
GO:0000812; Swr1 complex
GO:0043486; histone exchange" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=bromodomain; date=19700101 ||| term=orthologous to S. cerevisiae YLR399C and YDL070W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "bdf1" ; product "Swr1 complex bromodomain subunit Brf1" ;
chromosome3 GeneDB mRNA 1549911 1551232 . + . mRNA SPCC1753.04 ; systematic_id "SPCC1753.04" ; colour "2" ; gene "tol1 ||| SPCC1753.04" ; Alias "tol1" ; db_xref "SPD:16/16C08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for sulfite; db_xref=PMID:10850973; date=20100812 ||| term=target of lithium; date=19700101 ||| term=orthologous to S. cerevisiae YOL064C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20090618 ||| term=species distribution, conserved in Eukaryotes; date=20090618 ||| term=species distribution, conserved in Vertebrates; date=20090618 ||| term=species distribution, conserved in Metazoa; date=20090618 ||| term=species distribution, conserved in Bacteria; date=20090618 ||| term=human IMPA1 and IMPA2 ortholog; date=20100821 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; GO "GO:0008441; 3'(2'),5'-bisphosphate nucleotidase activity
GO:0004441; inositol-1,4-bisphosphate 1- phosphatase activity
GO:0006790; sulfur metabolism
GO:0006555; methionine biosynthetic process" ; primary_name "tol1" ; product "3'(2'),5'-bisphosphate nucleotidase/inositol-1,4- bisphosphate 1-phosphatase" ; EC_number "3.1.3.7 ||| 3.1.3.57" ;
chromosome3 GeneDB mRNA 1965492 1966868 . - . mRNA SPCC18.06c ; systematic_id "SPCC18.06c" ; colour "2" ; gene "caf1 ||| pop2 ||| SPCC18.06c" ; Alias "caf1" ; db_xref "SPD:14/14F07" ; synonym "pop2" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0030015; CCR4-NOT core complex
GO:0005737; cytoplasm
GO:0004535; poly(A)-specific ribonuclease activity
GO:0003729; mRNA binding
GO:0046872; metal ion binding
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0000289; poly(A) tail shortening
GO:0006357; regulation of transcription from RNA polymerase II promoter" ; primary_name "caf1" ; product "CCR4-Not complex CAF1 family ribonuclease subunit Caf1" ;
chromosome3 GeneDB mRNA 2207485 2209022 . - . mRNA SPCC1919.03c ; db_xref "SPD:20/20C01" ; systematic_id "SPCC1919.03c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005886; plasma membrane
GO:0019887; protein kinase regulator activity
GO:0042149; cellular response to glucose starvation
GO:0006468; protein amino acid phosphorylation
GO:0007165; signal transduction
GO:0005634; nucleus
GO:0031588; AMP-activated protein kinase complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, N-myristoylated; cv=pt_mod; evidence=ISS; db_xref=PMID:12562756; date=19700101 ||| term=orthologous to S. cerevisiae YGL208W and YER027C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1919.03c" ; product "AMP-activated protein kinase beta subunit (predicted)" ;
chromosome3 GeneDB mRNA 1524517 1525212 . - . mRNA SPCC584.16c ; db_xref "SPD:08/08B09" ; systematic_id "SPCC584.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC584.16c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1947837 1952180 . - . mRNA SPCC18.01c ; systematic_id "SPCC18.01c" ; colour "7" ; gene "adg3 ||| SPCC74.07c ||| SPCC18.01c" ; Alias "adg3" ; db_xref "SPD:30/30E01" ; synonym "SPCC74.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Ace2 Dependent Gene; db_xref=PMID:15689498; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; db_xref=PMID:15689498; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YMR244W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225" ; GO "GO:0009986; cell surface
GO:0008422; beta-glucosidase activity
GO:0000920; cell separation during cytokinesis" ; primary_name "adg3" ; product "beta-glucosidase Adg3 (predicted)" ;
chromosome3 GeneDB mRNA 1939257 1939805 . + . mRNA SPCC74.05 ; systematic_id "SPCC74.05" ; colour "7" ; gene "rpl2702 ||| rpl27-2 ||| SPCC74.05" ; Alias "rpl2702" ; db_xref "SPD:04/04D12" ; synonym "rpl27-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR010W and YDR471W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl2702" ; product "60S ribosomal protein L27 (predicted)" ;
chromosome3 GeneDB mRNA 700016 701721 . - . mRNA SPCC16C4.18c ; systematic_id "SPCC16C4.18c" ; colour "2" ; gene "taf50 ||| SPCC16C4.18c ||| taf6" ; Alias "taf6" ; db_xref "SPD:24/24F04" ; synonym "taf50" ; GO "GO:0000124; SAGA complex
GO:0005669; transcription factor TFIID complex
GO:0005515; protein binding
GO:0006338; chromatin remodeling
GO:0006367; transcription initiation from RNA polymerase II promoter
GO:0016573; histone acetylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; db_xref=PMID:11972332; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11972332; date=19700101 ||| term=orthologous to S. cerevisiae YGL112C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "taf6" ; product "histone H4-like TAF Taf6, SAGA complex subunit" ;
chromosome3 GeneDB mRNA 1721828 1722277 . + . mRNA SPCC191.10 ; db_xref "SPD:03/03H10" ; systematic_id "SPCC191.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC191.10" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1868480 1869730 . - . mRNA SPCC1223.12c ; systematic_id "SPCC1223.12c" ; colour "2" ; gene "meu10 ||| SPCC1223.12c" ; db_xref "SPD:20/20A01" ; Alias "meu10" ; GO "GO:0030476; fungal-type spore wall assembly
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; date=20100317 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR078W and YDR055W and YDR522C and YCL048W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20100104 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20100104 ||| term=phenotype, sporulation defects; cv=phenotype; db_xref=PMID:20410137; date=20100426 ||| term=phenotype, cell morphology, snowman during sporulation; cv=phenotype; db_xref=PMID:20410137; date=20100426 ||| term=name description, Meiotic Expression Upregulated; date=20100605" ; primary_name "meu10" ; product "GPI anchored cell surface protein involved in ascospore wall assembly Meu10" ;
chromosome3 GeneDB mRNA 1268750 1277435 . - . mRNA SPCC23B6.03c ; systematic_id "SPCC23B6.03c" ; colour "2" ; gene "tel1 ||| SPCC23B6.03c" ; Alias "tel1" ; db_xref "SPD:34/34D04" ; GO "GO:0005515; protein binding
GO:0004672; protein kinase activity
GO:0016572; histone phosphorylation
GO:0000723; telomere maintenance
GO:0000077; DNA damage checkpoint" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, ataxia- telangiectasia; date=20060801 ||| term=disease associated, cancer; date=20060801 ||| term=orthologous to S. cerevisiae YBL088C; date=19700101 ||| term=phosphoinositide 3-kinase family protein; date=20071228 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091123 ||| term=human ATM ortholog; date=20100217 ||| term=disease associated, cancer; date=20100217" ; primary_name "tel1" ; product "ATM checkpoint kinase" ;
chromosome3 GeneDB mRNA 102493 105601 . - . mRNA SPCC330.01c ; systematic_id "SPCC330.01c" ; colour "2" ; gene "rhp16 ||| SPCC613.13c ||| SPCC330.01c ||| rad16" ; Alias "rhp16" ; db_xref "SPD:47/47D05" ; synonym "SPCC613.13c ||| rad16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8879272; date=19700101 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:8765419; date=20100730 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=genome organization, divergently orientated to functionally related gene; cv=genome_org; db_xref=PMID:10446227; date=20061027 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=orthologous to S. cerevisiae YBR114W; date=19700101 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0004003; ATP-dependent DNA helicase activity
GO:0006289; nucleotide-excision repair
GO:0004842; ubiquitin-protein ligase activity
GO:0005634; nucleus
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding
GO:0000109; nucleotide-excision repair complex
GO:0006289; nucleotide-excision repair
GO:0005515; protein binding
GO:0034644; cellular response to UV
GO:0005524; ATP binding" ; primary_name "rhp16" ; product "Rad16 homolog Rhp16" ;
chromosome3 GeneDB mRNA 1150842 1151766 . - . mRNA SPCC4B3.14 ; systematic_id "SPCC4B3.14" ; colour "2" ; gene "cwf20 ||| SPCC4B3.14" ; Alias "cwf20" ; db_xref "SPD:11/11G11" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "cwf20" ; product "complexed with Cdc5 protein Cwf20" ;
chromosome3 GeneDB mRNA 1221450 1223156 . - . mRNA SPCC550.15c ; db_xref "SPD:44/44D12" ; systematic_id "SPCC550.15c" ; colour "7" ; GO "GO:0042273; ribosomal large subunit biogenesis and assembly
GO:0006913; nucleocytoplasmic transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-C2H2 type; date=19700101 ||| term=orthologous to S. cerevisiae YLR387C and YBR267W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC550.15c" ; product "ribosome biogenesis protein (predicted)" ;
chromosome3 GeneDB mRNA 1331231 1332550 . + . mRNA SPCC132.03 ; db_xref "SPD:43/43C05" ; systematic_id "SPCC132.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC132.03" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2101432 2101836 . - . mRNA SPCC576.12c ; systematic_id "SPCC576.12c" ; colour "2" ; gene "SPCC576.12c ||| mhf2" ; Alias "mhf2" ; db_xref "SPD:01/01F04" ; GO "GO:0071821; FANCM-MHF complex
GO:0003690; double-stranded DNA binding
GO: SF 3024450 NTR remove parents; Rad51-dependent gene conversion at stalled replication forks
GO:0000712; double-strand break repair via homologous recombination
GO:0031297; replication fork processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL160C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human STRA13 ortholog; db_xref=PMID:20347432; date=20100702 ||| term=disease associated, Fanconi anemia; db_xref=PMID:20347432; date=20100702" ; primary_name "mhf2" ; product "FANCM-MHF complex subunit Mhf2" ;
chromosome3 GeneDB mRNA 1898061 1900427 . - . mRNA SPCC737.07c ; db_xref "SPD:37/37E07" ; systematic_id "SPCC737.07c" ; colour "7" ; GO "GO:0006273; lagging strand elongation
GO:0000790; nuclear chromatin
GO:0043596; nuclear replication fork
GO:0005658; alpha DNA polymerase:primase complex
GO:0004003; ATP-dependent DNA helicase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YKL017C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC737.07c" ; product "DNA polymerase alpha-associated DNA helicase A (predicted)" ;
chromosome3 GeneDB mRNA 43573 45071 . + . mRNA SPCC1884.02 ; systematic_id "SPCC1884.02" ; colour "2" ; gene "nic1 ||| SPCC1884.02 ||| SPCC757.01" ; Alias "nic1" ; db_xref "SPD:19/19D04" ; synonym "SPCC757.01" ; GO "GO:0005887; integral to plasma membrane
GO:0015099; nickel ion transporter activity
GO:0035444; nickel ion transmembrane transport
GO:0034254; regulation of urea catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "nic1" ; product "NiCoT heavy metal ion transporter Nic1" ;
chromosome3 GeneDB mRNA 120575 122896 . - . mRNA SPCC330.07c ; db_xref "SPD:24/24D04" ; systematic_id "SPCC330.07c" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0006810; transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPCC613.02 and SPCC613.01 and SPCC757.11C; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC330.07c" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 2171357 2172403 . + . mRNA SPCC1620.13 ; db_xref "SPD:11/11B06" ; systematic_id "SPCC1620.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "7" ; gene "SPCC1620.13" ; product "phosphoglycerate mutase family (predicted)" ;
chromosome3 GeneDB mRNA 523960 525001 . + . mRNA SPCC10H11.02 ; systematic_id "SPCC10H11.02" ; colour "2" ; gene "cwf23 ||| SPCC10H11.02 ||| SPCP31B10.01" ; Alias "cwf23" ; db_xref "SPD:11/11G04" ; synonym "SPCP31B10.01" ; GO "GO:0005681; spliceosome complex
GO:0030544; Hsp70 protein binding
GO:0000398; nuclear mRNA splicing, via spliceosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, complexed with Cdc5; cv=name_description; db_xref=PMID:11884590; date=19700101 ||| term=orthologous to S. cerevisiae YGL128C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf23" ; product "DNAJ domain protein Cwf23" ;
chromosome3 GeneDB mRNA 691825 694903 . - . mRNA SPCC16C4.14c ; systematic_id "SPCC16C4.14c" ; colour "2" ; gene "sfc4 ||| SPCC16C4.14c" ; Alias "sfc4" ; db_xref "SPD:47/47G04" ; GO "GO:0000127; transcription factor TFIIIC complex
GO:0006384; transcription initiation from RNA polymerase III promoter
GO:0003709; RNA polymerase III transcription factor activity
GO:0043035; chromatin insulator sequence binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=20070216 ||| term=orthologous to S. cerevisiae YGR047C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "sfc4" ; product "transcription factor TFIIIC complex subunit Sfc4" ;
chromosome3 GeneDB mRNA 1051907 1053665 . + . mRNA SPCC1259.10 ; systematic_id "SPCC1259.10" ; colour "2" ; gene "pgp1 ||| SPCC1259.10" ; db_xref "SPD:44/44C07" ; Alias "pgp1" ; GO "GO:0004252; serine-type endopeptidase activity
GO:0008270; zinc ion binding
GO:0000002; mitochondrial genome maintenance" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL104C; date=19700101 ||| term=name description, pombe glycoprotease; cv=name_description; db_xref=PMID:11115118; date=20070723 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Pombe GlycoProtease; date=20101215" ; primary_name "pgp1" ; product "mitochondrial metallopeptidase involved in genome maintenance Pgp1" ;
chromosome3 GeneDB mRNA 1306150 1307802 . + . mRNA SPCC1322.09 ; db_xref "SPD:25/25D10" ; systematic_id "SPCC1322.09" ; colour "10" ; GO "GO:0005794; Golgi apparatus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL123C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1322.09" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 2195886 2197206 . - . mRNA SPCC830.08c ; systematic_id "SPCC830.08c" ; colour "2" ; db_xref "SPD:10/10C03" ; Alias "yop1" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0016192; vesicle-mediated transport
GO:0006886; intracellular protein transport
GO:0005783; endoplasmic reticulum
GO:0032153; cell division site
GO:0034613; cellular protein localization
GO:0071786; endoplasmic reticulum tubular network organization
; site selection involved in cell cycle cytokinesis
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, familial adenomatous polyposis; date=20060801 ||| term=orthologous to S. cerevisiae YPR028W; date=19700101 ||| term=human REEP5/REEP6 ortholog; date=20080822 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cytokinesis defects; db_xref=PMID:20434336; cv=phenotype; date=20100517" ; primary_name "yop1" ; product "ER membrane protein DP1/Yop1" ;
chromosome3 GeneDB mRNA 2231761 2233381 . + . mRNA SPCC1919.11 ; systematic_id "SPCC1919.11" ; colour "10" ; gene "SPCC1919.11 ||| mug137" ; Alias "mug137" ; db_xref "SPD:25/25H12" ; GO "GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, meiosis- specific splicing; db_xref=PMID:15893732; cv=gene_ex; date=20060601 ||| term=BAR domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human SH3GL1 and SH3GL2 and SH3GL3 ortholog; date=20100217" ; primary_name "mug137" ; product "BAR adaptor protein" ;
chromosome3 GeneDB mRNA 2424192 2426555 . + . mRNA SPCC569.05c ; db_xref "SPD:35/35G04" ; systematic_id "SPCC569.05c" ; colour "7" ; GO "GO:0015606; spermidine transporter activity
GO:0000297; spermine transporter activity
GO:0005886; plasma membrane
GO:0015848; spermidine transport
GO:0000296; spermine transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL028W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC569.05c" ; product "spermidine family transporter (predicted)" ;
chromosome3 GeneDB mRNA 1675090 1677016 . - . mRNA SPCC417.05c ; systematic_id "SPCC417.05c" ; colour "7" ; gene "chr2 ||| SPCC417.05c ||| cfh2" ; Alias "chr2" ; db_xref "SPD:24/24H12" ; synonym "cfh2" ; GO "GO:0051278; fungal-type cell wall polysaccharide biosynthetic process
GO:0046658; anchored to plasma membrane" ; controlled_curation "term=phenotype, viable; cv=phenotype; db_xref=PMID:15449309; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Chs Four Homologue; cv=name_description; date=20060106 ||| term=SEL1 repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YBL061C and YDL203C and YER096W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "chr2" ; product "chitin synthase regulatory factor Chr2 (predicted)" ;
chromosome3 GeneDB mRNA 1481138 1481966 . - . mRNA SPCC188.04c ; systematic_id "SPCC188.04c" ; colour "2" ; gene "spc25 ||| SPCC188.04c" ; Alias "spc25" ; db_xref "SPD:51/51C02" ; GO "GO:0031617; NMS complex
GO:0031262; Ndc80 complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005816; spindle pole body
GO:0005515; protein binding
GO:0051455; attachment of spindle microtubules to kinetochore during meiosis I
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spc25" ; product "kinetochore protein Spc25" ;
chromosome3 GeneDB mRNA 1885787 1886855 . - . mRNA SPCC297.06c ; systematic_id "SPCC297.06c" ; colour "10" ; gene "SPCC297.06c ||| SPCC737.01c" ; note "was previously annotated as ribosomal protein based on SGD Mrp8, but there is no evidence for this assignment from experimentation or sequence similarity" ; db_xref "SPD:08/08B02" ; synonym "SPCC737.01c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted; date=19700101 ||| term=orthologous to S. cerevisiae YKL142W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 481996 482821 . - . mRNA SPCC364.03 ; systematic_id "SPCC364.03" ; colour "7" ; gene "rpl1702 ||| rpl17-2 ||| rpl17 ||| SPCC364.03" ; Alias "rpl1702" ; db_xref "SPD:05/05H10" ; synonym "rpl17-2 ||| rpl17" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL180W and YJL177W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1702" ; product "60S ribosomal protein L17 (predicted)" ;
chromosome3 GeneDB mRNA 554379 556248 . + . mRNA SPCC962.05 ; systematic_id "SPCC962.05" ; colour "10" ; gene "SPCC962.05 ||| ast1" ; Alias "ast1" ; db_xref "SPD:35/35B08" ; GO "GO:0004518; nuclease activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20080519 ||| term=XP-G family; date=20080519 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ast1" ; product "asteroid homolog, XP-G family protein" ; reserved_name "ast1" ;
chromosome3 GeneDB mRNA 1624658 1625682 . + . mRNA SPCC777.15 ; db_xref "SPD:14/14B08" ; systematic_id "SPCC777.15" ; colour "7" ; GO "GO:0017150; tRNA dihydrouridine synthase activity
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR405W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC777.15" ; product "tRNA dihydrouridine synthase Dus4 (predicted)" ;
chromosome3 GeneDB mRNA 1257676 1258411 . - . mRNA SPCC645.12c ; db_xref "SPD:06/06F01" ; systematic_id "SPCC645.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=20101210 ||| term=species distribution, sequence orphan, uncharacterised; date=20101210 ||| term=species distribution, identified in S. pombe only; date=20101210 ||| term=species distribution, no apparnet orthologs; date=20101210 ||| term=warning, was previuosly annotated as Med9; date=20101210" ; colour "8" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1195051 1195816 . - . mRNA SPCC550.06c ; systematic_id "SPCC550.06c" ; colour "7" ; gene "hsp10 ||| SPCC550.06c" ; Alias "hsp10" ; db_xref "SPD:01/01F06" ; GO "GO:0006457; protein folding
GO:0030150; protein import into mitochondrial matrix
GO:0005759; mitochondrial matrix
GO:0051082; unfolded protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "hsp10" ; product "mitochondrial heat shock protein Hsp10 (predicted)" ;
chromosome3 GeneDB mRNA 821294 822237 . + . mRNA SPCC1393.11 ; db_xref "SPD:06/06E07" ; systematic_id "SPCC1393.11" ; colour "7" ; GO "GO:0003735; structural constituent of ribosome
GO:0000002; mitochondrial genome maintenance
GO:0005762; mitochondrial large ribosomal subunit
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR085C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC1393.11" ; product "mitochondrial ribosomal protein subunit L20 (predicted)" ;
chromosome3 GeneDB mRNA 500751 502840 . + . mRNA SPCC970.07c ; systematic_id "SPCC970.07c" ; colour "2" ; gene "raf2 ||| dos2 ||| cmc2 ||| clr7 ||| SPCC970.07c" ; Alias "raf2" ; db_xref "SPD:26/26F09" ; synonym "dos2 ||| cmc2 ||| clr7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zf-basic zinc finger; qualifier=predicted; db_xref=PMID:16024659; date=19700101 ||| term=zinc finger protein; qualifier=predicted; db_xref=PMID:16024659; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16040243; date=19700101 ||| term=name description, Rik1- Associated Factor; cv=name_description; date=20091106 ||| term=name description, Delocalization Of Swi6; cv=name_description; date=20091106 ||| term=name description, Cullin- associated Methyltransferase complex subunit; date=20100318 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=human ortholog DNMT1; date=20100318 ||| term=species distribution, conserved in Eukaryotes; date=20100318 ||| term=species distribution, conserved in Eukaryotes only; date=20100318 ||| term=species distribution, conserved in Metazoa; date=20100318 ||| term=species distribution, conserved in Vertebrates; date=20100318 ||| term=species distribution, conserved in Fungi; date=20100318 ||| term=name description, Cryptic Loci Regulator; date=20100727" ; GO "GO:0043494; Rik1-E3 ubiquitin ligase complex
GO:0005737; cytoplasm
GO:0031934; mating-type region heterochromatin
GO:0031618; nuclear centric heterochromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0045132; meiotic chromosome segregation
GO:0051754; meiotic sister chromatid cohesion, centromeric
GO:0000070; mitotic sister chromatid segregation
GO:0051572; negative regulation of histone H3-K4 methylation
GO:0051574; positive regulation of histone H3-K9 methylation
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0031494; regulation of mating type switching
GO:0031048; small RNA-mediated chromatin silencing
GO:0035391; maintenance of chromatin silencing at silent mating-type cassette" ; primary_name "raf2" ; product "Rik1-associated factor Raf2" ;
chromosome3 GeneDB mRNA 2364897 2366442 . + . mRNA SPCC70.06 ; db_xref "SPD:51/51D09" ; systematic_id "SPCC70.06" ; colour "7" ; GO "GO:0005643; nuclear pore
GO:0006406; mRNA export from nucleus
GO:0006611; protein export from nucleus
GO:0042274; ribosome small subunit biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC70.06" ; product "nuclear export factor (predicted)" ;
chromosome3 GeneDB mRNA 1526472 1529891 . - . mRNA SPCC584.01c ; db_xref "SPD:47/47G05" ; systematic_id "SPCC584.01c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR030W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0004783; sulfite reductase (NADPH) activity
GO:0009337; sulfite reductase complex (NADPH)
GO:0000103; sulfate assimilation
GO:0005737; cytoplasm" ; gene "SPCC584.01c" ; product "sulfite reductase NADPH flavoprotein subunit (predicted)" ; EC_number "1.8.1.2" ;
chromosome3 GeneDB mRNA 88905 89570 . - . mRNA SPCC613.05c ; systematic_id "SPCC613.05c" ; colour "2" ; gene "rpl35 ||| SPCC613.05c" ; Alias "rpl35" ; db_xref "SPD:42/42F12" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL191W and YDL136W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpl35" ; product "60S ribosomal protein L35" ;
chromosome3 GeneDB mRNA 372215 375297 . - . mRNA SPCC1682.02c ; systematic_id "SPCC1682.02c" ; colour "2" ; gene "mcm3 ||| SPCC1682.02c" ; Alias "mcm3" ; db_xref "SPD:38/38G03" ; GO "GO:0006270; DNA replication initiation
GO:0042555; MCM complex
GO:0000084; S phase of mitotic cell cycle
GO:0005656; pre-replicative complex
GO:0006271; DNA strand elongation during DNA replication
GO:0004003; ATP-dependent DNA helicase activity
GO:0031261; DNA replication preinitiation complex
GO:0031390; nuclear replication fork" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9705504; date=20100708 ||| term=species distribution, conserved in Archaea; date=20081109 ||| term=orthologous to S. cerevisiae YEL032W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mcm3" ; product "MCM complex subunit Mcm3" ;
chromosome3 GeneDB mRNA 1405969 1406367 . - . mRNA SPCC622.03c ; db_xref "SPD:42/42A11" ; systematic_id "SPCC622.03c" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101 ||| term=similar to S. pombe SPCC622.06c; date=19700101 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101" ; colour "6" ; gene "SPCC622.03c" ; product "dubious" ;
chromosome3 GeneDB mRNA 2204136 2206069 . + . mRNA SPCC1919.01 ; systematic_id "SPCC1919.01" ; colour "2" ; gene "SPCC830.12 ||| SPCC1919.01 ||| ppk34" ; Alias "ppk34" ; db_xref "SPD:44/44H06" ; synonym "SPCC830.12" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0007165; signal transduction
GO:2000248; negative regulation of establishment or maintenence of bipolar cell polarity resulting in cell shape" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe Ssp1; date=20070523 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk34" ; product "serine/threonine protein kinase Ppk34" ;
chromosome3 GeneDB mRNA 1325125 1328370 . - . mRNA SPCC132.01c ; systematic_id "SPCC132.01c" ; colour "10" ; gene "SPCC1322.17c ||| SPCC132.01c" ; Alias "SPCC1322.17c" ; db_xref "SPD:47/47H01" ; synonym "SPCC1322.17c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL009C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human SDCCAG1 ortholog; date=20100728" ; primary_name "SPCC1322.17c" ; product "DUF814 family protein" ;
chromosome3 GeneDB mRNA 1598981 1601173 . + . mRNA SPCC777.02 ; systematic_id "SPCC777.02" ; colour "7" ; gene "SPCC777.02" ; note "09.07.02 added N-terminal exon to extend homology. perhaps pseudo ||| 28.10.03 replaced N terminal exon with 2 better exons, still not sure its correct but it looks better than before" ; db_xref "SPD:34/34H10" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR337W and YLR098C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB mRNA 1008455 1010986 . + . mRNA SPCC895.06 ; db_xref "SPD:28/28F05" ; systematic_id "SPCC895.06" ; colour "7" ; GO "GO:0006400; tRNA modification
GO:0033588; Elongator holoenzyme complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YGR200C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC895.06" ; product "elongator complex subunit Elp2 (predicted)" ;
chromosome3 GeneDB mRNA 1179636 1182622 . - . mRNA SPCP25A2.02c ; systematic_id "SPCP25A2.02c" ; colour "2" ; gene "rhp26 ||| SPCP25A2.02c" ; Alias "rhp26" ; db_xref "SPD:29/29G03" ; GO "GO:0008094; DNA-dependent ATPase activity
GO:0006283; transcription-coupled nucleotide- excision repair
GO:0005634; nucleus
GO:0004003; ATP-dependent DNA helicase activity
GO:0005524; ATP binding
GO:0006283; transcription-coupled nucleotide- excision repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=helicase C-terminal domain; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=disease associated, Cockayne syndrome; date=19700101 ||| term=human ERCC6 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YJR035W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, ubiquitinated; cv=pt_mod; evidence=IDA; db_xref=PMID:18794354; date=20090909" ; primary_name "rhp26" ; product "SNF2 family helicase Rhp26" ;
chromosome3 GeneDB mRNA 2001186 2004268 . + . mRNA SPCC290.04 ; systematic_id "SPCC290.04" ; colour "2" ; gene "ams2 ||| SPCC290.04 ||| SPCC4F11.01" ; Alias "ams2" ; db_xref "SPD:40/40H03" ; synonym "SPCC4F11.01" ; GO "GO:0000775; chromosome, pericentric region
GO:0019237; centromeric DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0000070; mitotic sister chromatid segregation
GO:0034613; cellular protein localization
GO:0034080; DNA replication-independent nucleosome assembly at centromere
GO:0000790; nuclear chromatin" ; controlled_curation "term=gene expression, expression cell cycle regulated; db_xref=PMID:12535531; cv=gene_ex; date=20050415 ||| term=zinc finger protein; date=19700101 ||| term=zf-GATA type; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12535531; date=19700101 ||| term=orthologous to S. cerevisiae YJL110C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "ams2" ; product "cell cycle regulated GATA-type transcription factor Ams2" ;
chromosome3 GeneDB mRNA 320617 321523 . + . mRNA SPCC736.05 ; systematic_id "SPCC736.05" ; colour "12" ; gene "SPCC736.05 ||| wtf7" ; db_xref "SPD:13/13G05" ; Alias "wtf7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf7" ; product "wtf element Wtf7" ;
chromosome3 GeneDB mRNA 527392 528690 . + . mRNA SPCP31B10.04 ; db_xref "SPD:15/15H07" ; systematic_id "SPCP31B10.04" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL077W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCP31B10.04" ; product "conserved fungal protein" ; note "homology to YKL077W is low but has conserved residues by multiple alignment, conserved N-terminal signal peptide and C-terminal transmenbrane helix ||| confirmed intron" ;
chromosome3 GeneDB mRNA 1691782 1694432 . - . mRNA SPCC417.09c ; db_xref "SPD:38/38G10" ; systematic_id "SPCC417.09c" ; colour "7" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0005634; nucleus
GO:0008270; zinc ion binding
GO:0003677; DNA binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-fungal Zn(2)-Cys(6) binuclear cluster domain; date=19700101 ||| term=similar to S. pombe SPAC3C7.04 and SPAC1486.10 and SPBP8B7.30C (paralogs); date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC417.09c" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB mRNA 580593 582701 . + . mRNA SPCC1672.09 ; db_xref "SPD:25/25G03" ; systematic_id "SPCC1672.09" ; colour "7" ; GO "GO:0016298; lipase activity
GO:0004771; sterol esterase activity
GO:0006629; lipid metabolism
GO:0006696; ergosterol metabolic process
GO:0044242; cellular lipid catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL140W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1672.09" ; product "triglyceride lipase-cholesterol esterase (predicted)" ;
chromosome3 GeneDB mRNA 1781505 1782032 . - . mRNA SPCC1442.08c ; systematic_id "SPCC1442.08c" ; colour "7" ; gene "cox12 ||| SPCC1442.08c" ; Alias "cox12" ; db_xref "SPD:03/03B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR038C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0033617; mitochondrial respiratory chain complex IV assembly
GO:0005751; mitochondrial respiratory chain complex IV
GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration" ; primary_name "cox12" ; product "cytochrome c oxidase subunit VIb (predicted)" ; EC_number "1.9.3.1" ;
chromosome3 GeneDB mRNA 1561240 1565422 . + . mRNA SPCC162.09c ; systematic_id "SPCC162.09c" ; colour "2" ; db_xref "SPD:30/30B08" ; Alias "hmg1" ; synonym "its12" ; GO "GO:0004420; hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0004420; hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0006696; ergosterol biosynthetic process
GO:0005789; endoplasmic reticulum membrane
GO:0031965; nuclear membrane
GO:0010142; farnesyl diphosphate biosynthesis, mevalonate pathway
GO:0005515; protein binding
GO:0031505; fungal-type call wall organization
GO:0042175; nuclear envelope-endoplasmic reticulum network" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8896278; date=20091127 ||| term=phenotype, increased HMG-CoA reductase activity; db_xref=PMID:19041767; cv=phenotype; residue=F358A/F359A; qualifier=ts; date=20090206 ||| term=phenotype, resistance to lavostatin; cv=phenotype; db_xref=PMID:8896278; date=20091127 ||| term=phenotype, sensitive to pravastatin; qualifier=ts; residue=234W->opal; allele=hmg1- 1; db_xref=PMID:19486165; date=20091127 ||| term=phenotype, septation defects; qualifier=ts; residue=234W->opal; allele=hmg1-1; db_xref=PMID:19486165; date=20091127 ||| term=phenotype, cell wall defects; qualifier=ts; residue=234W->opal; allele=hmg1-1; db_xref=PMID:19486165; cv=phenotype; date=20091127 ||| term=phenotype, cell morphology, misshapen cells; qualifier=ts; residue=234W->opal; allele=hmg1-1; db_xref=PMID:19486165; cv=phenotype; date=20091127 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YML075C and YLR450W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, hyperchlesterolemia; date=20091127 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19041767; residue=S1024|T1028; qualifier=during_nutrient_limitation; cv=pt_mod; date=20090206 ||| term=name description, Immunosuppressant and Temperature Sensitive; db_xref=PMID:19486165; date=20091127" ; primary_name "hmg1" ; product "3-hydroxy-3-methylglutaryl-CoA reductase Hmg1" ; EC_number "1.1.1.34" ;
chromosome3 GeneDB mRNA 927401 929387 . + . mRNA SPCC24B10.15 ; db_xref "SPD:21/21E03" ; systematic_id "SPCC24B10.15" ; colour "7" ; GO "GO:0000166; nucleotide binding
GO:0004521; endoribonuclease activity
GO:0006351; transcription, DNA dependent
GO:0071032; nuclear mRNA surveillance of mRNP export" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR166C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=PINc domain; date=20091004" ; gene "SPCC24B10.15" ; product "RNA endoribonuclease involved in mRNP quality control (predicted)" ;
chromosome3 GeneDB mRNA 182768 186920 . - . mRNA SPCC1235.05c ; systematic_id "SPCC1235.05c" ; colour "7" ; gene "SPCC1235.05c ||| fft2" ; Alias "fft2" ; db_xref "SPD:39/39D02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YAL019W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016585; chromatin remodeling complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0004003; ATP-dependent DNA helicase activity
GO:0004003; ATP-dependent DNA helicase activity
GO:0006338; chromatin remodeling
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0000790; nuclear chromatin" ; primary_name "fft2" ; product "fun thirty related protein Fft2 (predicted)" ; reserved_name "fft2" ;
chromosome3 GeneDB mRNA 2367804 2368636 . - . mRNA SPCC70.08c ; db_xref "SPD:10/10G11" ; systematic_id "SPCC70.08c" ; colour "10" ; GO "GO:0008168; methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC70.08c" ; product "methyltransferase (predicted)" ;
chromosome3 GeneDB mRNA 2327116 2328656 . - . mRNA SPCC1494.04c ; systematic_id "SPCC1494.04c" ; colour "2" ; gene "tyr1 ||| SPCC1494.04c" ; Alias "tyr1" ; db_xref "SPD:21/21F02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR166C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004665; prephenate dehydrogenase (NADP+) activity
GO:0005737; cytoplasm
GO:0006571; tyrosine biosynthesis
GO:0004665; prephenate dehydrogenase (NADP+) activity
GO:0006571; tyrosine biosynthesis" ; primary_name "tyr1" ; product "prephenate dehydrogenase [NADP+] Tyr1 (predicted)" ; EC_number "1.3.1.13" ;
chromosome3 GeneDB mRNA 1848891 1852520 . + . mRNA SPCC1223.06 ; systematic_id "SPCC1223.06" ; colour "2" ; gene "tea1 ||| alp8 ||| SPCC1223.06" ; Alias "tea1" ; db_xref "SPD:48/48C11" ; synonym "alp8" ; GO "GO:0031500; Tea1 cell-end complex
GO:0051285; cell cortex of cell tip
GO:0005875; microtubule associated complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0007163; establishment and/or maintenance of cell polarity
GO:0071775; regulation of cell cycle cytokinesis
GO: SF 30778546; positive regulation of establishment of cell polarity resulting in cell shape
GO:0010570; regulation of filamentous growth
GO:0007017; microtubule-based process" ; controlled_curation "term=phenotype, viable; cv=phenotype; date=19700101 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, branched; qualifier=deletion|low_penetrance; db_xref=PMID:8522609; date=20100731 ||| term=phenotype, cell morphology, curved; qualifier=deletion; db_xref=PMID:8522609; date=20100731 ||| term=phenotype, filament morphology aberrant; qualifier=deletion; db_xref=PMID:19542312; date=20090706 ||| term=name description, Tip Elongation Aberrant; cv=name_description; date=19700101 ||| term=kelch repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR158C and YGR238C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target of Shk1; qualifier=phosphorylated_by; db_xref=PMID:12764130; date=20100826" ; primary_name "tea1" ; product "cell end marker Tea1" ;
chromosome3 GeneDB mRNA 1532126 1532753 . + . mRNA SPCC584.02 ; systematic_id "SPCC584.02" ; colour "7" ; gene "cuf2 ||| SPCC584.02" ; Alias "cuf2" ; db_xref "SPD:42/42E07" ; GO "GO:0050801; ion homeostasis
GO:0003677; DNA binding
GO:0006355; regulation of transcription, DNA- dependent
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0005507; copper ion binding
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR021C and YGL166W and YPR008W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "cuf2" ; product "Cu metalloregulatory transcription factor Cuf2 (predicted)" ;
chromosome3 GeneDB mRNA 1031060 1032601 . - . mRNA SPCC825.05c ; db_xref "SPD:16/16B08" ; systematic_id "SPCC825.05c" ; colour "7" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC825.05c" ; product "splicing coactivator SRRM1 (predicted)" ;
chromosome3 GeneDB mRNA 1656998 1657546 . - . mRNA SPCC663.13c ; systematic_id "SPCC663.13c" ; colour "7" ; gene "SPCC663.13c" ; Alias "naa50" ; db_xref "SPD:03/03F11" ; synonym "nat5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR253W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; GO "GO:0031415; NatA complex
GO:0005737; cytoplasm
GO:0034212; peptide N-acetyltransferase activity
GO:0017196; N-terminal peptidyl-methionine acetylation" ; primary_name "naa50" ; product "NatA N-acetyltransferase subunit Naa50 (predicted)" ;
chromosome3 GeneDB mRNA 568700 569072 . - . mRNA SPCC1672.04c ; db_xref "SPD:42/42A07" ; systematic_id "SPCC1672.04c" ; colour "7" ; GO "GO:0033617; mitochondrial respiratory chain complex IV assembly
GO:0005758; mitochondrial intermembrane space
GO:0016531; copper chaperone activity
GO:0005507; copper ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CHCH domain; date=19700101 ||| term=orthologous to S. cerevisiae YLL018C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1672.04c" ; product "mitochondrial copper chaperone (predicted)" ;
chromosome3 GeneDB mRNA 69495 71200 . - . mRNA SPCC757.11c ; db_xref "SPD:21/21G10" ; systematic_id "SPCC757.11c" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPCC613.02 and SPCC613.01 and SPCC330.07c; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPCC757.11c" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 2427219 2427584 . - . mRNA SPCC569.04 ; systematic_id "SPCC569.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC569.04" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2318335 2318966 . - . mRNA SPCC1494.02c ; systematic_id "SPCC1494.02c" ; colour "7" ; gene "taf13 ||| SPCC1494.02c" ; note "splicing tentative, 1st exon may not be real - also last two exons" ; Alias "taf13" ; db_xref "SPD:43/43F07" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YML098W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005669; transcription factor TFIID complex
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006367; transcription initiation from RNA polymerase II promoter" ; primary_name "taf13" ; product "transcription factor TFIID complex subunit Taf13 (predicted)" ;
chromosome3 GeneDB mRNA 2084942 2085706 . - . mRNA SPCC576.03c ; systematic_id "SPCC576.03c" ; colour "2" ; gene "tpx1 ||| SPCC576.03c" ; db_xref "SPD:06/06C07" ; Alias "tpx1" ; GO "GO:0005737; cytoplasm
GO:0004601; peroxidase activity
GO:0051920; peroxiredoxin activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0008379; thioredoxin peroxidase activity
GO:0045454; cell redox homeostasis
GO:0034599; cellular response to oxidative stress
GO:0061077; chaperone-mediated protein folding
GO:0042744; hydrogen peroxide catabolic process
GO:0006457; protein folding
GO:0010468; regulation of gene expression
GO:0006417; regulation of tanslation
GO:0019430; removal of superoxide radicals" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, aerobic growth defects; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=phenotype, accumulation of carbonylated proteins; db_xref=PMID:17409354; cv=phenotype; date=20100201 ||| term=target is Pap1; db_xref=PMID:15824112; date=20050419 ||| term=target is Sty1; db_xref=PMID:15225554; date=20050419 ||| term=orthologous to S. cerevisiae YML028W and YDR453C; date=19700101 ||| term=human PRDX2 ortholog; date=20080622 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=thioredoxin family; date=20081111 ||| term=misc functional group, chaperone; evidence=ISS; cv=m_f_g; date=20100126 ||| term=modification, disulphide bond; residue=cys48|cys169; db_xref=PMID:17409354; cv=pt_mod; date=20100201 ||| term=modification, sulfinic acid formation; residue=cys48; db_xref=PMID:17409354; cv=pt_mod; date=20100201 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Pap1; db_xref=PMID:15824112; date=20050419 ||| term=target is Sty1; db_xref=PMID:15225554; date=20050419" ; primary_name "tpx1" ; product "thioredoxin peroxidase Tpx1" ;
chromosome3 GeneDB mRNA 419790 421165 . - . mRNA SPCC306.07c ; db_xref "SPD:17/17H06" ; systematic_id "SPCC306.07c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0042273; ribosomal large subunit biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR052W and YKR060W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC306.07c" ; product "U3 snoRNP-associated protein Cic1/Utp30 family (predicted)" ;
chromosome3 GeneDB mRNA 1025552 1027596 . + . mRNA SPCC825.02 ; db_xref "SPD:26/26D11" ; systematic_id "SPCC825.02" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0004573; mannosyl-oligosaccharide glucosidase activity
GO:0006487; protein amino acid N-linked glycosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, polycystic liver disease; date=19700101 ||| term=orthologous to S. cerevisiae YDR221W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; gene "SPCC825.02" ; product "glucosidase II Gtb1 (predicted)" ;
chromosome3 GeneDB mRNA 1460261 1462351 . - . mRNA SPCC11E10.05c ; systematic_id "SPCC11E10.05c" ; colour "2" ; gene "ynd1 ||| SPCC11E10.05c" ; Alias "ynd1" ; db_xref "SPD:35/35F03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER005W; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12686557; date=19700101 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0017110; nucleoside-diphosphatase activity
GO:0005794; Golgi apparatus
GO:0035268; protein amino acid mannosylation
GO:0047429; nucleoside-triphosphate diphosphatase activity" ; primary_name "ynd1" ; product "nucleoside diphosphatase Ynd1" ; EC_number "3.6.1.6 ||| 3.6.1.5 ||| 3.6.1.19" ;
chromosome3 GeneDB mRNA 1823315 1827049 . + . mRNA SPCC285.14 ; systematic_id "SPCC285.14" ; colour "7" ; gene "SPCC285.14" ; Alias "trs130" ; db_xref "SPD:39/39C01" ; GO "GO:0006886; intracellular protein transport
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0030008; TRAPP complex
GO:0017112; Rab guanyl-nucleotide exchange factor activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR218C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "trs130" ; product "TRAPP complex subunit Trs130 (predicted)" ;
chromosome3 GeneDB mRNA 1349656 1351084 . - . mRNA SPCC338.14 ; db_xref "SPD:15/15D03" ; systematic_id "SPCC338.14" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR105W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004001; adenosine kinase activity
GO:0006144; purine base metabolism
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006169; adenosine salvage" ; gene "SPCC338.14" ; product "adenosine kinase (predicted)" ; EC_number "2.7.1.20" ;
chromosome3 GeneDB mRNA 2043282 2044067 . - . mRNA SPCC1739.08c ; db_xref "SPD:09/09H02" ; systematic_id "SPCC1739.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=related to S. pombe SPAC22A12.17C and SPAC8E11.10; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; colour "10" ; gene "SPCC1739.08c" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB mRNA 1438206 1439839 . + . mRNA SPCC622.19 ; systematic_id "SPCC622.19" ; colour "7" ; gene "SPCC622.19 ||| jmj4 ||| mug149" ; Alias "jmj4" ; db_xref "SPD:23/23E12" ; synonym "mug149" ; GO "GO:0045449; regulation of transcription
GO:0000790; nuclear chromatin
GO:0006338; chromatin remodeling
GO:0032452; histone demethylase activity
GO:0016577; histone demethylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=jmjC domain; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "jmj4" ; product "Jmj4 protein (predicted)" ; reserved_name "jmj4" ;
chromosome3 GeneDB mRNA 2079421 2080662 . - . mRNA SPCC576.01c ; systematic_id "SPCC576.01c" ; colour "7" ; gene "SPCPB1C11.04c ||| SPCC576.01c" ; Alias "SPCPB1C11.04c" ; db_xref "SPD:50/50A05" ; synonym "SPCPB1C11.04c" ; GO "GO:0000907; sulfonate dioxygenase activity
GO:0044273; sulfur compound catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL057C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; primary_name "SPCPB1C11.04c" ; product "sulfonate dioxygenase (predicted)" ; EC_number "1.14.11.-" ;
chromosome3 GeneDB mRNA 1988631 1991055 . - . mRNA SPCC18.18c ; systematic_id "SPCC18.18c" ; colour "7" ; gene "fum1 ||| SPCC18.18c ||| SPCC290.01c" ; Alias "fum1" ; db_xref "KEGG:MAP00020; ||| KEGG:MAP00720; ||| SPD:23/23D04" ; synonym "SPCC290.01c" ; GO "GO:0006106; fumarate metabolism
GO:0006099; tricarboxylic acid cycle
GO:0004333; fumarate hydratase activity
GO:0005759; mitochondrial matrix
GO:0005829; cytosol" ; controlled_curation "term=disease associated, hereditary leiomyomatosis; date=20060920 ||| term=disease associated, renal cell cancer; date=20060920 ||| term=orthologous to S. cerevisiae YPL262W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20091113" ; primary_name "fum1" ; product "fumarate hydratase (predicted)" ; EC_number "4.2.1.2" ;
chromosome3 GeneDB mRNA 1711998 1713536 . - . mRNA SPCC191.05c ; db_xref "SPD:07/07C09" ; systematic_id "SPCC191.05c" ; colour "7" ; GO "GO:0050144; nucleoside deoxyribosyltransferase activity
GO:0009116; nucleoside metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20081203 ||| term=species distribution, conserved in Eukaryotes; date=20081203 ||| term=species distribution, conserved in Vertebrates; date=20081203 ||| term=species distribution, conserved in Metazoa; date=20081203 ||| term=human RCL ortholog; date=20100824" ; gene "SPCC191.05c" ; product "nucleoside 2-deoxyribosyltransferase (predicted)" ;
chromosome3 GeneDB mRNA 1685650 1688951 . + . mRNA SPCC417.08 ; systematic_id "SPCC417.08" ; colour "2" ; gene "SPCC417.08 ||| tef3" ; Alias "tef3" ; db_xref "SPD:30/30B04" ; GO "GO:0022626; cytosolic ribosome (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=orthologous to S. cerevisiae YNL014W and YLR249W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "tef3" ; product "translation elongation factor eEF3" ;
chromosome3 GeneDB mRNA 2137595 2139128 . + . mRNA SPCC126.12 ; db_xref "SPD:14/14H02" ; systematic_id "SPCC126.12" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005739; mitochondrion
GO:0006350; transcription" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL221C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human NIF3LI ortholog; date=20100728" ; gene "SPCC126.12" ; product "NGG1 interacting factor 3 family, implicated in trancription" ;
chromosome3 GeneDB mRNA 657500 658258 . + . mRNA SPCC16C4.19 ; systematic_id "SPCC16C4.19" ; colour "7" ; gene "SPCC5E4.08 ||| SPCC16C4.19" ; Alias "SPCC5E4.08" ; db_xref "SPD:05/05G05" ; synonym "SPCC5E4.08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR478W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Bacteria; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Vertebrates; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=human RPP21 ortholog; date=20100919 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100824" ; GO "GO:0006379; mRNA cleavage
GO:0000172; ribonuclease MRP complex
GO:0007346; reglation of mitotic cell cycle" ; primary_name "SPCC5E4.08" ; product "RNase MRP subunit (predicted)" ;
chromosome3 GeneDB mRNA 729112 730708 . + . mRNA SPCC18B5.06 ; systematic_id "SPCC18B5.06" ; colour "7" ; gene "SPCC18B5.06" ; obsolete_name "erf1 ||| sup45" ; db_xref "SPD:44/44D11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL001W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0006412; translation
GO:0000294; nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay
GO:0070317; negative regulation of G1 to G0 transition" ; product "translation release factor eRF1 family protein (predicted)" ;
chromosome3 GeneDB mRNA 1233276 1238227 . - . mRNA SPCC645.05c ; systematic_id "SPCC645.05c" ; colour "2" ; db_xref "SPD:30/30H12" ; Alias "myo2" ; synonym "rng5" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:9415380; date=20100712 ||| term=phenotype, multinucleate; qualifier=overexpression; db_xref=PMID:9415380; date=20100712 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:9182664; date=20100712 ||| term=phenotype, multinucleate; qualifier=overexpression; db_xref=PMID:9182664; date=20100712 ||| term=phenotype, cell morphology, branched; qualifier=overexpression; db_xref=PMID:9182664; date=20100712 ||| term=phenotype, cell morphology, elongated dumbbell; qualifier=overexpression; db_xref=PMID:9182664; date=20100802 ||| term=IQ domain; date=19700101 ||| term=misc, functional septation initiation network required; db_xref=PMID:11739799; date=19700101 ||| term=orthologous to S. cerevisiae YHR023W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=human MYH9 and MYH11 ortholog; date=20100218 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:11739799; date=20090213 ||| term=modification, phosphorylated; residue=1444; cv=pt_mod; db_xref=PMID:15814401; date=20090213" ; GO "GO:0005826; contractile ring
GO:0016460; myosin II complex
GO:0005524; ATP binding
GO:0003779; actin binding
GO:0030899; calcium-dependent ATPase activity
GO:0000146; microfilament motor activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000915; cytokinesis, contractile ring formation
GO:0071520; actin filament bundle convergence involved in actomyosin contractile ring formation" ; primary_name "myo2" ; product "myosin II heavy chain" ;
chromosome3 GeneDB mRNA 142975 144130 . - . mRNA SPCC320.12 ; systematic_id "SPCC320.12" ; colour "7" ; gene "SPCC330.17c ||| SPCC320.12 ||| atp23" ; Alias "atp23" ; db_xref "SPD:07/07A12" ; synonym "SPCC330.17c" ; GO "GO:0004222; metalloendopeptidase activity
GO:0033615; mitochondrial proton-transporting ATP synthase complex assembly
GO:0005743; mitochondrial inner membrane
GO:0034982; mitochondrial protein processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR020C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "atp23" ; product "mitochondrial inner membrane peptidase Atp23 (predicted)" ;
chromosome3 GeneDB mRNA 394822 397130 . - . mRNA SPCC1682.12c ; systematic_id "SPCC1682.12c" ; colour "2" ; gene "SPCC1682.12c ||| ubp16" ; db_xref "SPD:21/21C10" ; Alias "ubp16" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL186W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20101004 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human USP36 and USP42 ortholog; date=2101004" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005730; nucleolus" ; primary_name "ubp16" ; product "ubiquitin C-terminal hydrolase Ubp16" ;
chromosome3 GeneDB mRNA 615605 616689 . + . mRNA SPCC1183.10 ; Alias "wtf10" ; systematic_id "SPCC1183.10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; colour "12" ; gene "wtf10 ||| SPCC1183.10" ; primary_name "wtf10" ; product "wtf element Wtf10" ;
chromosome3 GeneDB mRNA 685880 687201 . + . mRNA SPCC16C4.10 ; systematic_id "SPCC16C4.10" ; colour "7" ; gene "SPCC16C4.10" ; note "Pentose phosphate shunt enzymes are cytoplasmic (Bohringer metabolic pathways)" ; db_xref "KEGG:MAP00030; ||| SPD:12/12B06" ; GO "GO:0009051; pentose-phosphate shunt, oxidative branch
GO:0017057; 6-phosphogluconolactonase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR034W and YCR073W-A and YHR163W and YGR248W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; product "6-phosphogluconolactonase (predicted)" ; EC_number "3.1.1.31" ;
chromosome3 GeneDB mRNA 770722 771957 . - . mRNA SPCC1020.07 ; db_xref "SPD:14/14G07" ; systematic_id "SPCC1020.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL033W-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC1020.07" ; product "haloacid dehalogenase-like hydrolase" ;
chromosome3 GeneDB mRNA 1966855 1967345 . - . mRNA SPCC18.19c ; systematic_id "SPCC18.19c" ; colour "7" ; obsolete_name "SPNCRNA.509 ||| SPNG2532" ; Alias "ost5" ; controlled_curation "term=warning, new gene; db_xref=PMID:18022010; cv=warning; date=20100218 ||| term=warning, gene structure may be incorrect; cv=warning; date=20100218 ||| term=orthologous to S. cerevisiae YGL226C-A; date=20100218 ||| term=species distribution, conserved in Eukaryotes; date=20100218 ||| term=species distribution, conserved in Fungi; date=20100218 ||| term=species distribution, conserved in Fungi only; date=20100218 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100218" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation
GO:0004579; dolichyl-diphosphooligosaccharide- protein glycotransferase activity" ; primary_name "ost5" ; product "oligosaccharyltransferase complex zeta subunit Ost5 (predicted)" ;
chromosome3 GeneDB mRNA 1963016 1964774 . - . mRNA SPCC18.05c ; db_xref "SPD:34/34H09" ; systematic_id "SPCC18.05c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YCR072C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC18.05c" ; product "notchless-like protein (predicted)" ;
chromosome3 GeneDB mRNA 2155627 2157496 . - . mRNA SPCC1620.07c ; db_xref "SPD:18/18B04" ; systematic_id "SPCC1620.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR192W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human LNP ortholog; date=20100728" ; colour "10" ; gene "SPCC1620.07c" ; product "lunapark homolog" ;
chromosome3 GeneDB mRNA 1695726 1697252 . + . mRNA SPCC417.10 ; db_xref "SPD:24/24G09" ; systematic_id "SPCC417.10" ; colour "7" ; GO "GO:0071916; dipeptide transmembrane transporter activity
GO:0006810; transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR152W and YLR004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC417.10" ; product "dipeptide transmembrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 1814240 1816000 . - . mRNA SPCC285.10c ; db_xref "SPD:18/18B08" ; systematic_id "SPCC285.10c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR171C and YKL124W; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC285.10c" ; product "SPRY domain protein" ;
chromosome3 GeneDB mRNA 828003 830297 . + . mRNA SPCC2H8.02 ; db_xref "SPD:36/36A09" ; systematic_id "SPCC2H8.02" ; colour "7" ; GO "GO:0005887; integral to plasma membrane
GO:0005315; inorganic phosphate transporter activity
GO:0035435; phosphate transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML123C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827" ; gene "SPCC2H8.02" ; product "inorganic phosphate transporter (predicted)" ;
chromosome3 GeneDB mRNA 2181204 2182504 . + . mRNA SPCC830.02 ; systematic_id "SPCC830.02" ; colour "13" ; gene "wtf24 ||| SPCC830.02" ; Alias "wtf24" ; db_xref "SPD:22/22F03" ; pseudo "_no_value" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf24" ; product "pseudogene wtf element Wtf24" ;
chromosome3 GeneDB mRNA 1827717 1831681 . - . mRNA SPCC285.16c ; systematic_id "SPCC285.16c" ; colour "2" ; gene "msh6 ||| SPCC285.16c" ; Alias "msh6" ; db_xref "SPD:48/48F04" ; GO "GO:0005524; ATP binding
GO:0032137; guanine/thymine mispair binding
GO:0043570; maintenance of DNA repeat elements
GO:0006298; mismatch repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, cancer; date=20060926 ||| term=orthologous to S. cerevisiae YDR097C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human MSH6 ortholog; date=20100217" ; primary_name "msh6" ; product "MutS protein homolog" ;
chromosome3 GeneDB mRNA 1261338 1263525 . - . mRNA SPCC645.14c ; systematic_id "SPCC645.14c" ; colour "2" ; gene "sti1 ||| SPCC645.14c" ; Alias "sti1" ; db_xref "SPD:36/36C06" ; GO "GO:0031072; heat shock protein binding
GO:0006457; protein folding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sti1" ; product "chaperone activator Sti1 (predicted)" ;
chromosome3 GeneDB mRNA 2099856 2100517 . + . mRNA SPCC576.11 ; systematic_id "SPCC576.11" ; colour "7" ; gene "rpl15 ||| SPCC576.11" ; Alias "rpl15" ; db_xref "SPD:41/41D07" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR029C and YMR121C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl15" ; product "60S ribosomal protein L15 (predicted)" ;
chromosome3 GeneDB mRNA 293402 295218 . + . mRNA SPCC553.07c ; systematic_id "SPCC553.07c" ; colour "2" ; Alias "kpa1" ; db_xref "SPD:45/45B06" ; synonym "mug40 ||| pol(kappa) ||| pol-kappa" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; date=20090729 ||| term=human POLK ortholog; date=20100224" ; GO "GO:0000790; nuclear chromatin
GO:0003887; DNA-directed DNA polymerase activity
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006281; DNA repair
GO:0006974; response to DNA damage stimulus
GO:0019985; translesion synthesis
GO:0000077; DNA damage checkpoint" ; primary_name "kpa1" ; product "DinB translesion DNA repair polymerase, pol kappa" ; EC_number "2.7.7.7" ; reserved_name "kpa1" ;
chromosome3 GeneDB mRNA 1551562 1552607 . + . mRNA SPCC1753.05 ; systematic_id "SPCC1753.05" ; colour "2" ; gene "rsm1 ||| SPCC1753.05" ; Alias "rsm1" ; db_xref "SPD:12/12B04" ; GO "GO:0006406; mRNA export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15357289; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rsm1" ; product "RNA export factor Rsm1" ;
chromosome3 GeneDB mRNA 1978526 1980286 . + . mRNA SPCC18.13 ; db_xref "SPD:20/20G02" ; systematic_id "SPCC18.13" ; colour "7" ; GO "GO:0005634; nucleus
GO:0043234; protein complex
GO:0030488; tRNA methylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR165W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC18.13" ; product "tRNA (guanine-N7-)-methyltransferase subunit Trm82 (predicted)" ;
chromosome3 GeneDB mRNA 115589 116631 . - . mRNA SPCC330.05c ; systematic_id "SPCC330.05c" ; colour "2" ; gene "ura4 ||| SPCC330.05c" ; Alias "ura4" ; db_xref "SPD:10/10A08" ; controlled_curation "term=target of SAPK pathway; db_xref=PMID:12521309; date=19700101 ||| term=gene expression, expression induced by glucose; db_xref=PMID:12521309; date=19700101 ||| term=orthologous to S. cerevisiae YEL021W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004590; orotidine-5'-phosphate decarboxylase activity
GO:0006207; 'de novo' pyrimidine base biosynthesis" ; primary_name "ura4" ; product "orotidine 5'-phosphate decarboxylase Ura4" ; EC_number "4.1.1.23" ;
chromosome3 GeneDB mRNA 96647 98210 . + . mRNA SPCC613.10 ; systematic_id "SPCC613.10" ; colour "7" ; gene "qcr2 ||| SPCC613.10" ; Alias "qcr2" ; db_xref "SPD:20/20E06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005198; structural molecule activity
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0008121; ubiquinol-cytochrome-c reductase activity" ; primary_name "qcr2" ; product "ubiquinol-cytochrome-c reductase complex core protein Qcr2 (predicted)" ; EC_number "1.10.2.2" ;
chromosome3 GeneDB mRNA 1050036 1051797 . - . mRNA SPCC1259.09c ; systematic_id "SPCC1259.09c" ; colour "7" ; gene "SPCC1259.09c" ; Alias "pdx1" ; db_xref "KEGG:MAP00620; ||| SPD:45/45D10" ; GO "GO:0006086; acetyl-CoA biosynthesis from pyruvate
GO:0005967; pyruvate dehydrogenase complex (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, lipoylated; attribution=pers. comm. J. Stolz; date=20100304 ||| term=orthologous to S. cerevisiae YGR193C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "pdx1" ; product "pyruvate dehydrogenase protein x component, Pdx1 (predicted)" ;
chromosome3 GeneDB mRNA 2006651 2008106 . - . mRNA SPCC4F11.03c ; db_xref "SPD:14/14H10" ; systematic_id "SPCC4F11.03c" ; colour "8" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPCC4F11.03c" ; product "sequence orphan" ; note "shows similar to FG repeat units of GLFG family of nucleoporins ||| possible alternative in frame intron at 5894..5962, does not improve homology" ;
chromosome3 GeneDB mRNA 1788002 1788550 . - . mRNA SPCC1442.11c ; db_xref "SPD:05/05F06" ; systematic_id "SPCC1442.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1442.11c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1555182 1557913 . + . mRNA SPCC162.11c ; db_xref "SPD:21/21B07" ; systematic_id "SPCC162.11c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR012W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=catalytic activity, bifunctional enzyme; cv=cat_act; date=20090619" ; GO "GO:0004849; uridine kinase activity
GO:0008655; pyrimidine salvage
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004845; uracil phosphoribosyltransferase activity" ; gene "SPCC162.11c" ; product "uridine kinase/uracil phosphoribosyltransferase (predicted)" ; EC_number "2.7.1.48 ||| 2.4.2.9" ;
chromosome3 GeneDB mRNA 1766086 1768821 . + . mRNA SPCC1442.01 ; systematic_id "SPCC1442.01" ; colour "2" ; gene "ste6 ||| SPCC1450.17 ||| SPCC1442.01" ; Alias "ste6" ; db_xref "SPD:39/39A11" ; synonym "SPCC1450.17" ; GO "GO:0000747; conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, transcriptionally regulated by Ste11; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YLR310C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, sterile; db_xref=PMID:3185514; date=20101013 ||| term=name description, STErile; db_xref=PMID:3185514; date=20101013" ; primary_name "ste6" ; product "guanyl-nucleotide exchange factor Ste6" ;
chromosome3 GeneDB mRNA 1925505 1928311 . - . mRNA SPCC74.02c ; db_xref "SPD:38/38D08" ; systematic_id "SPCC74.02c" ; colour "2" ; GO "GO:0005847; mRNA cleavage and polyadenylation specificity factor complex
GO:0006379; mRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; gene "SPCC74.02c" ; product "mRNA cleavage and polyadenylation specificity factor complex associated protein" ;
chromosome3 GeneDB mRNA 1783662 1785552 . + . mRNA SPCC1442.09 ; systematic_id "SPCC1442.09" ; colour "7" ; gene "trp3 ||| SPCC1442.09" ; Alias "trp3" ; db_xref "SPD:45/45E03" ; GO "GO:0004049; anthranilate synthase activity
GO:0000162; tryptophan biosynthetic process
GO:0005950; anthranilate synthase complex
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER090W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "trp3" ; product "anthranilate synthase component I (predicted)" ;
chromosome3 GeneDB mRNA 159855 162280 . - . mRNA SPCC320.05 ; db_xref "SPD:27/27D07" ; systematic_id "SPCC320.05" ; colour "7" ; GO "GO:0015116; sulfate transmembrane transporter activity
GO:0008272; sulfate transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC320.05" ; product "sulphate transporter (predicted)" ;
chromosome3 GeneDB mRNA 1914768 1917648 . - . mRNA SPCC737.09c ; systematic_id "SPCC737.09c" ; colour "2" ; gene "hmt1 ||| SPCC737.09c ||| SPCC74.08c" ; Alias "hmt1" ; db_xref "SPD:47/47A02" ; synonym "SPCC74.08c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20070216 ||| term=ABC transporter family; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000329; vacuolar membrane
GO:0005524; ATP binding
GO:0042626; ATPase activity, coupled to transmembrane movement of substances
GO:0034634; glutathione transmembrane transporter activity
GO:0071276; cellular response to cadmium ion
GO:0071276; cellular response to cadmium ion
GO:0071996; glutathione import into vacuole
GO:0071995; phytochelatin import into vacuole" ; primary_name "hmt1" ; product "ATP-binding cassette-type vacuolar membrane transporter Hmt1" ;
chromosome3 GeneDB mRNA 584130 585840 . + . mRNA SPCC1672.10 ; systematic_id "SPCC1672.10" ; colour "2" ; gene "mis16 ||| SPCC1672.10" ; Alias "mis16" ; db_xref "SPD:23/23D08" ; GO "GO:0031511; Mis6-Sim4 complex
GO:0000778; condensed chromosome kinetochore
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0034080; DNA replication-independent nucleosome assembly at centromere
GO:0031055; chromatin remodeling at centromere
GO:0000070; mitotic sister chromatid segregation
GO:0016575; histone deacetylation
GO:0051382; kinetochore assembly
GO:0034501; protein localization to kinetochore
GO:0031066; regulation of histone deacetylation at centromere
GO:0005515; protein binding
GO:0070317; negative regulation of G1 to G0 transition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15369671; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RbAp46/RbAp48 ortholog; date=20090423 ||| term=name description, Minichromosome InStability; cv=name_description; date=20091221 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "mis16" ; product "kinetochore protein Mis16" ;
chromosome3 GeneDB mRNA 874608 877803 . + . mRNA SPCC16A11.04 ; systematic_id "SPCC16A11.04" ; colour "7" ; gene "SPCC16A11.04" ; Alias "snx12" ; db_xref "SPD:29/29H04" ; GO "GO:0005737; cytoplasm
GO:0035091; phosphoinositide binding
GO:0005200; structural constituent of cytoskeleton
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YML104C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "snx12" ; product "sorting nexin Snx12 (predicted)" ;
chromosome3 GeneDB mRNA 1716751 1717605 . + . mRNA SPCC191.08 ; db_xref "SPD:03/03B04" ; systematic_id "SPCC191.08" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL260C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ORAOV1 ortholog; date=20100223" ; gene "SPCC191.08" ; product "DUF1715 family protein" ;
chromosome3 GeneDB mRNA 1677471 1679436 . - . mRNA SPCC417.06c ; systematic_id "SPCC417.06c" ; colour "2" ; gene "ppk35 ||| mug27 ||| SPCC417.06c ||| slk1" ; Alias "mug27" ; db_xref "SPD:27/27B04" ; synonym "ppk35 ||| slk1" ; GO "GO:0005628; forespore membrane
GO:0005628; forespore membrane
; spindle pole body
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0004674; protein serine/threonine kinase activity
GO:0031321; ascospore-type prospore formation
GO:0032120; ascospore-type prospore membrane formation
GO:0032120; ascospore-type prospore membrane formation
GO:0045132; meiotic chromosome segregation
GO:0006468; protein amino acid phosphorylation
GO:0032889; regulation of vacuole fusion, non- autophagic
GO:0031028; septation initiation signaling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YGR092W and YPR111W; date=19700101 ||| term=Ndr kinase/myotonic dystrophy kinase/cot1/warts family; db_xref=PMID:18411246|PMID:18397994; date=20080416 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:18411246|PMID:18397994; date=20080416 ||| term=localization dependent on a proper forespore membrane; db_xref=PMID:183411246; date=20080416 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; primary_name "mug27" ; product "meiosis specific protein kinase Mug27/Slk1" ;
chromosome3 GeneDB mRNA 1417100 1418983 . + . mRNA SPCC622.11 ; db_xref "SPD:26/26D08" ; systematic_id "SPCC622.11" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPCC622.11" ; product "LMBR1-like membrane protein" ;
chromosome3 GeneDB mRNA 2292961 2294448 . + . mRNA SPCC965.06 ; db_xref "SPD:15/15F11" ; systematic_id "SPCC965.06" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; colour "7" ; gene "SPCC965.06" ; product "potassium channel subunit (predicted)" ;
chromosome3 GeneDB mRNA 783066 784000 . + . mRNA SPCC1020.04c ; systematic_id "SPCC1020.04c" ; colour "2" ; gene "rpb6 ||| rpo15 ||| SPCC1020.04c" ; Alias "rpb6" ; db_xref "KEGG:MAP00230; ||| KEGG:MAP00240; ||| KEGG:MAP03020; ||| SPD:07/07D07" ; synonym "rpo15" ; GO "GO:0005736; DNA-directed RNA polymerase I complex
GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006354; RNA elongation
GO:0006360; transcription from RNA polymerase I promoter
GO:0006366; transcription from RNA polymerase II promoter
GO:0006383; transcription from RNA polymerase III promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YPR187W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpb6" ; product "DNA-directed RNA polymerase I, II and III subunit Rpb6" ;
chromosome3 GeneDB mRNA 930521 931841 . + . mRNA SPCC24B10.17 ; systematic_id "SPCC24B10.17" ; colour "7" ; gene "emp24 ||| SPCC24B10.17" ; Alias "emp24" ; db_xref "SPD:10/10A11" ; GO "GO:0030134; ER to Golgi transport vesicle
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0006886; intracellular protein transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human TMED2 ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGL200C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "emp24" ; product "COPII-coated vesicle component Emp24 (predicted)" ;
chromosome3 GeneDB mRNA 2143949 2144956 . - . mRNA SPCC1620.01c ; systematic_id "SPCC1620.01c" ; colour "7" ; gene "lsm2 ||| SPCC1620.01c" ; Alias "lsm2" ; db_xref "SPD:09/09C05" ; GO "GO:0003723; RNA binding
GO:0006402; mRNA catabolism
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0006364; rRNA processing
GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0005730; nucleolus
GO:0005732; small nucleolar ribonucleoprotein complex
GO:0005688; snRNP U6" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL026W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsm2" ; product "U6 snRNP-associated protein core protein (predicted)" ;
chromosome3 GeneDB mRNA 2373975 2376176 . - . mRNA SPCC1827.01c ; db_xref "SPD:27/27A12" ; systematic_id "SPCC1827.01c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005634; nucleus
GO:0030490; maturation of SSU-rRNA
GO:0032040; small-subunit processome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL091C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1827.01c" ; product "U3 associated protein Utp25 (predicted)" ;
chromosome3 GeneDB mRNA 362699 363715 . - . mRNA SPCC594.04c ; db_xref "SPD:15/15B08" ; systematic_id "SPCC594.04c" ; colour "7" ; GO "GO:0016229; steroid dehydrogenase activity
GO:0008202; ergosterol metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC594.04c" ; product "steroid oxidoreductase superfamily protein (predicted)" ;
chromosome3 GeneDB mRNA 2369108 2369790 . - . mRNA SPCC70.09c ; systematic_id "SPCC70.09c" ; colour "10" ; gene "SPCC70.09c ||| mug9" ; db_xref "SPD:07/07H10" ; Alias "mug9" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR295C and YGR273C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug9" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 1761221 1763148 . + . mRNA SPCC1450.15 ; systematic_id "SPCC1450.15" ; colour "7" ; gene "SPCC1450.15" ; note "looks like a gene merge but was sequenced independently in redundant clone c1100" ; db_xref "SPD:45/45B01" ; GO "GO:0000234; phosphoethanolamine N- methyltransferase activity
GO:0006506; GPI anchor biosynthesis
GO:0005789; endoplasmic reticulum membrane
GO:0006666; 3-keto-sphinganine metabolism
GO:0005783; endoplasmic reticulum
GO:0016651; oxidoreductase activity, acting on NADH or NADPH
GO:0051377; mannose-ethanolamine phosphotransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem fusion protein; cv=genome_org; date=20061012 ||| term=genome organization, domain combination not observed in other organisms; cv=genome_org; date=20061012 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR302W (C-term); date=19700101 ||| term=orthologous to S. cerevisiae YBR265W (N-term); date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human FVT1 ortholog; date=20100217" ; product "pig-F (predicted)" ;
chromosome3 GeneDB mRNA 1618441 1619268 . - . mRNA SPCC777.17c ; db_xref "SPD:04/04E04" ; systematic_id "SPCC777.17c" ; colour "7" ; GO "GO:0005762; mitochondrial ribosome large subunit
GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC777.17c" ; product "mitochondrial ribosomal protein subunit L9 (predicted)" ;
chromosome3 GeneDB mRNA 1358737 1359819 . - . mRNA SPCC338.08 ; systematic_id "SPCC338.08" ; colour "2" ; gene "SPCC338.08 ||| ctp1 ||| mug38" ; Alias "ctp1" ; db_xref "SPD:11/11D10" ; synonym "nip1 ||| slr9 ||| mug38" ; GO "GO:0000228; chromosome
GO:0004519; endonuclease activity
GO:0042803; protein homodimerization activity
GO:0000729; DNA double-strand break processing
GO:0000729; DNA double-strand break processing
; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination
GO:0000706; meiotic DNA double-strand break processing
GO:0010212; response to ionizing radiation
GO:0000724; double-strand break repair via homologous recombination
GO:0000724; double-strand break repair via homologous recombination" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17936710; date=20071109 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to IR; db_xref=PMID:17936710; cv=phenotype; date=20100723 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:17936710; cv=phenotype; date=20100723 ||| term=phenotype, growth defect, slow growth; db_xref=PMID:17936710; cv=phenotype; date=20100723 ||| term=orthologous to S. cerevisiae YGL175C; date=20071109 ||| term=human CtIP homolog; db_xref=PMID:17936710; date=20071109 ||| term=localization, double-strand breaks; db_xref=PMID:17936710; date=20071109 ||| term=localization requires Mre11; db_xref=PMID:17936710; date=20071109 ||| term=gene expression, transcriptionally regulated by MBF complex; db_xref=PMID:17936710; cv=gene_ex; date=20071109 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=during_DNA_damage; db_xref=PMID:18378696; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:18378696; date=20090723 ||| term=name description, Synthetic Lethal with Rad2 mutant; cv=name_description; db_xref=PMID:18378696; date=20090723 ||| term=name description, Nbs1- Interacting Protein 1; cv=name_description; db_xref=PMID:18378696; date=20090723 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=target of Tel1; qualifier=phosphorylated_by; db_xref=PMID:18378696; date=20090903" ; primary_name "ctp1" ; product "CtIP-related endonuclease" ;
chromosome3 GeneDB mRNA 606295 611687 . + . mRNA SPCC1183.07 ; db_xref "SPD:31/31B04" ; systematic_id "SPCC1183.07" ; colour "7" ; GO "GO:0042134; rRNA primary transcript binding
GO:0030515; snoRNA binding
GO:0006364; rRNA processing
GO:0005732; small nucleolar ribonucleoprotein complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR229C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1183.07" ; product "U3 snoRNP-associated protein Rrp5 (predicted)" ;
chromosome3 GeneDB mRNA 679277 684083 . + . mRNA SPCC16C4.09 ; systematic_id "SPCC16C4.09" ; colour "2" ; gene "sts5 ||| orb4 ||| SPCC16C4.09" ; Alias "sts5" ; db_xref "SPD:48/48A05" ; synonym "orb4" ; GO "GO:0005737; cytoplasm
GO:0003723; RNA binding
GO:0004540; ribonuclease activity
GO:0006401; RNA catabolic process
GO:0034613; cellular protein localization
; regulation of maintenance of bipolar cell polarity during cell shaping" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8886983; date=19700101 ||| term=phenotype, cell morphology, round cells; db_xref=PMID:8886983; date=20100731 ||| term=phenotype, cell morphology, stubby cells; qualifier=at_low_temperature; db_xref=PMID:8886983; date=20100731 ||| term=pathway, distinct from protein kinase C pathway and osmosensing MAP-kinase pathway; cv=pathway; db_xref=PMID:8886983; date=19700101 ||| term=target of staurosporine; date=19700101 ||| term=orthologous to S. cerevisiae YDR293C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "sts5" ; product "RNB-like protein" ;
chromosome3 GeneDB mRNA 722016 725590 . + . mRNA SPCC18B5.03 ; systematic_id "SPCC18B5.03" ; colour "2" ; db_xref "SPD:47/47A06" ; Alias "wee1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:872890; date=19700101 ||| term=orthologous to S. cerevisiae YJL187C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Cdc2; qualifier=phosphorylates|inhibits; db_xref=PMID:1372994; date=20090826 ||| term=localization dependent on Cdr2; db_xref=PMID:19474789; date=20090826 ||| term=phenotype, cell morpology, small cells; db_xref=PMID:1165770; qualifier=deletion; date=20101124" ; GO "GO:0071341; medial cortical node
GO:0005654; nucleoplasm
GO:0005634; nucleus
GO:0005634; nucleus
GO:0005816; spindle pole body
GO:0005524; ATP binding
GO:0004715; non-membrane spanning protein tyrosine kinase activity
; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0000077; DNA damage checkpoint
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle
GO:0031660; negative regulation of cyclin- dependent protein kinase activity during G2/M
GO:0018108; peptidyl-tyrosine phosphorylation
GO:0008361; regulation of cell size
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "wee1" ; product "M phase inhibitor protein kinase Wee1" ;
chromosome3 GeneDB mRNA 903461 905056 . - . mRNA SPCC24B10.02c ; db_xref "SPD:20/20H09" ; systematic_id "SPCC24B10.02c" ; colour "7" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL041W and YJR049C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0019674; NAD metabolism
GO:0003951; NAD+ kinase activity" ; gene "SPCC24B10.02c" ; product "NAD/NADH kinase (predicted)" ; EC_number "2.7.1.23" ;
chromosome3 GeneDB mRNA 956424 956804 . - . mRNA SPCPB16A4.06c ; db_xref "SPD:41/41A04" ; systematic_id "SPCPB16A4.06c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPCPB16A4.06c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1249494 1252193 . - . mRNA SPCC645.08c ; systematic_id "SPCC645.08c" ; colour "10" ; gene "SPCC645.08c ||| snd1" ; Alias "snd1" ; db_xref "SPD:38/38G02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=tudor domain; date=19700101 ||| term=human SND1 ortholog; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0030148; chromatin silencing by small RNA" ; primary_name "snd1" ; product "RNA-binding protein Snd1" ; reserved_name "snd1" ;
chromosome3 GeneDB mRNA 80387 82092 . + . mRNA SPCC613.01 ; systematic_id "SPCC613.01" ; colour "7" ; gene "SPCC757.14 ||| SPCC613.01" ; Alias "SPCC757.14" ; db_xref "SPD:24/24B07" ; synonym "SPCC757.14" ; GO "GO:0016021; integral to membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPCC613.02 and SPCC330.07c and SPCC757.11c (paralogs); date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "SPCC757.14" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 1156111 1156556 . + . mRNA SPCC4B3.11c ; db_xref "SPD:02/02C05" ; systematic_id "SPCC4B3.11c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YAL046C; date=19700101 ||| term=human BOLA3 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "10" ; gene "SPCC4B3.11c" ; product "mitochondrial conserved eukaryotic protein" ;
chromosome3 GeneDB mRNA 917864 918367 . + . mRNA SPCC24B10.09 ; systematic_id "SPCC24B10.09" ; colour "7" ; gene "rps1702 ||| rps17-2 ||| rps17 ||| SPCC24B10.09" ; Alias "rps1702" ; db_xref "SPD:04/04C01" ; synonym "rps17-2 ||| rps17" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML024W and YDR447C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rps1702" ; product "40S ribosomal protein S17 (predicted)" ;
chromosome3 GeneDB mRNA 1711522 1711824 . - . mRNA SPCC191.04c ; db_xref "SPD:01/01E01" ; systematic_id "SPCC191.04c" ; colour "6" ; gene "SPCC191.04c" ; product "dubious" ;
chromosome3 GeneDB mRNA 747865 748582 . - . mRNA SPCC14G10.03c ; systematic_id "SPCC14G10.03c" ; colour "7" ; gene "SPCC14G10.03c ||| ump1" ; Alias "ump1" ; db_xref "SPD:04/04G05" ; GO "GO:0043248; proteasome assembly
GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR173C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ump1" ; product "proteasome maturation factor Ump1 (predicted)" ;
chromosome3 GeneDB mRNA 990692 991955 . + . mRNA SPCC1795.04c ; systematic_id "SPCC1795.04c" ; colour "7" ; gene "pre10 ||| SPCC1795.04c" ; Alias "pre10" ; db_xref "SPD:12/12G02" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR362C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081116 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005634; nucleus
GO:0019773; proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle" ; primary_name "pre10" ; product "20S proteasome component alpha 7, Pre10 (predicted)" ; EC_number "3.4.25.1" ;
chromosome3 GeneDB mRNA 2407803 2408293 . - . mRNA SPCP1E11.09c ; systematic_id "SPCP1E11.09c" ; colour "2" ; gene "rpp103 ||| rpp1-3 ||| SPCP1E11.09c" ; Alias "rpp103" ; db_xref "SPD:04/04E05" ; synonym "rpp1-3" ; GO "GO:0006414; translational elongation
GO:0003735; structural constituent of ribosome
GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL081C and YDL130W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081203 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpp103" ; product "60S acidic ribosomal protein Rpp1-3" ;
chromosome3 GeneDB mRNA 2028247 2029125 . - . mRNA SPCC1739.02c ; systematic_id "SPCC1739.02c" ; colour "7" ; gene "SPCC1739.02c ||| mrpl22" ; Alias "mrpl22" ; db_xref "SPD:43/43B02" ; GO "GO:0005762; mitochondrial large ribosomal subunit
GO:0003735; structural constituent of ribosome
GO:0006412; translation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL177C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl22" ; product "mitochondrial ribosomal protein subunit L22 (predicted)" ;
chromosome3 GeneDB mRNA 487167 488519 . + . mRNA SPCC970.11c ; systematic_id "SPCC970.11c" ; colour "12" ; gene "SPCC970.11c ||| wtf9" ; Alias "wtf9" ; obsolete_name "wtf2" ; db_xref "SPD:52/52B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf9" ; product "wtf element Wtf9" ;
chromosome3 GeneDB mRNA 1514795 1515142 . + . mRNA SPCC584.12 ; systematic_id "SPCC584.12" ; colour "8" ; gene "SPCC584.12 ||| mug42" ; db_xref "SPD:02/02B12" ; Alias "mug42" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=gene expression, expressed during meiosis; db_xref=PMID:16303567; date=20100607" ; primary_name "mug42" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 801197 804501 . + . mRNA SPCC1393.05 ; systematic_id "SPCC1393.05" ; colour "2" ; gene "SPCC1393.05 ||| ers1" ; Alias "ers1" ; db_xref "SPD:30/30C12" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Essential for RNA Silencing; cv=name_description; db_xref=PMID:18658154; date=20080729 ||| term=cystinosin family; date=20080905 ||| term=PQ loop; qualifier=inferred from context; date=20080905 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0034630; RITS complex localization
GO:0030422; RNA interference, production of siRNA
GO:0030702; chromatin silencing at centromere
GO:0051570; regulation of histone H3-K9 methylation
GO:0030148; chromatin silencing by small RNA" ; primary_name "ers1" ; product "RNA-silencing factor Ers1" ; reserved_name "rsh1" ;
chromosome3 GeneDB mRNA 888629 889295 . + . mRNA SPCC16A11.11 ; systematic_id "SPCC16A11.11" ; colour "7" ; gene "mrpl31 ||| SPCC16A11.11" ; Alias "mrpl31" ; db_xref "SPD:02/02B10" ; GO "GO:0003735; structural constituent of ribosome
GO:0032543; mitochondrial translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL138C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mrpl31" ; product "mitochondrial ribosomal protein subunit L31 (predicted)" ;
chromosome3 GeneDB mRNA 447034 450041 . + . mRNA SPCC4G3.12c ; db_xref "SPD:28/28G12" ; systematic_id "SPCC4G3.12c" ; colour "7" ; GO "GO:0004842; ubiquitin-protein ligase activity
GO:0016567; protein ubiquitination
GO:0008270; zinc ion binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ubiquitin-protein ligase E3; date=20060726 ||| term=zinc finger protein; date=20060726 ||| term=zf-C3HC4 type (RING finger); date=20060726 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC4G3.12c" ; product "ubiquitin-protein ligase E3 (predicted)" ;
chromosome3 GeneDB mRNA 2165032 2168772 . + . mRNA SPCC1620.11 ; systematic_id "SPCC1620.11" ; colour "2" ; gene "SPCC1620.11 ||| mug87 ||| nup97" ; Alias "nup97" ; db_xref "SPD:38/38F01" ; synonym "mug87" ; GO "GO:0006913; nucleocytoplasmic transport
GO:0005643; nuclear pore
GO:0016973; poly(A)+ mRNA export from nucleus
GO:0016973; poly(A)+ mRNA export from nucleus" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YFR002W; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:17846589; date=20080104 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nup97" ; product "nucleoporin Nic96 homolog" ;
chromosome3 GeneDB mRNA 1940302 1947736 . + . mRNA SPCC74.06 ; systematic_id "SPCC74.06" ; colour "2" ; gene "mak3 ||| SPCC74.06 ||| phk2" ; Alias "mak3" ; db_xref "SPD:34/34C10" ; synonym "phk2" ; GO "GO:0000160; two-component signal transduction system (phosphorelay)
GO:0000155; two-component sensor activity
GO:0031137; regulation of conjugation with cellular fusion
GO:0007346; regulation of progression through mitotic cell cycle
GO:0034599; cellular response to oxidative stress
GO:0031098; stress-activated protein kinase signaling pathway
GO:0006468; protein amino acid phosphorylation
GO:0004673; protein histidine kinase activity
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11758939; date=19700101 ||| term=PAC domain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Sty1; qualifier=phosphorylates; db_xref=PMID:17072883; date=20100820" ; primary_name "mak3" ; product "histidine kinase Mak3" ;
chromosome3 GeneDB mRNA 1194005 1194943 . + . mRNA SPCC550.05 ; systematic_id "SPCC550.05" ; colour "2" ; gene "nse1 ||| SPCC550.05" ; Alias "nse1" ; db_xref "SPD:06/06H04" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0004842; ubiquitin-protein ligase activity
GO:0006281; DNA repair
GO:0000724; double-strand break repair via homologous recombination
GO:0006311; meiotic gene conversion
GO:0007131; meiotic recombination
GO:0007131; meiotic recombination
GO:0016567; protein ubiquitination
GO:0048478; replication fork protection" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12966087; date=19700101 ||| term=phenotype, cell morphology, elongated cells; db_xref=PMID:12966087; date=20100727 ||| term=zf-C3HC4 type (RING finger); evidence=TAS; db_xref=PMID:15331764; date=20060504 ||| term=ubiquitin-protein ligase E3; evidence=TAS; db_xref=PMID:15331764; date=20060504 ||| term=orthologous to S. cerevisiae YLR007W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:12966087; date=20050426" ; primary_name "nse1" ; product "Smc5-6 complex non-SMC subunit 1" ;
chromosome3 GeneDB mRNA 1645115 1645876 . - . mRNA SPCC663.06c ; db_xref "SPD:40/40A12" ; systematic_id "SPCC663.06c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YKL071W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC663.06c" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB mRNA 287240 289704 . + . mRNA SPCC553.09c ; systematic_id "SPCC553.09c" ; colour "2" ; gene "spb70 ||| SPCC553.09c ||| pol12" ; Alias "spb70" ; db_xref "SPD:36/36H01" ; synonym "pol12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15314153; date=19700101 ||| term=orthologous to S. cerevisiae YBL035C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0005658; alpha DNA polymerase:primase complex
GO:0000790; nuclear chromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0006270; DNA replication initiation
GO:0006269; DNA replication, synthesis of RNA primer" ; primary_name "spb70" ; product "DNA polymerase alpha B-subunit" ;
chromosome3 GeneDB mRNA 857041 859190 . + . mRNA SPCC63.11 ; systematic_id "SPCC63.11" ; colour "7" ; gene "prp28 ||| SPCC63.11" ; Alias "prp28" ; db_xref "SPD:27/27C08" ; GO "GO:0004004; ATP-dependent RNA helicase activity
GO:0000354; cis assembly of pre-catalytic spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YDR243C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp28" ; product "U5 snRNP-associated protein Prp28 (predicted)" ;
chromosome3 GeneDB mRNA 668586 669306 . + . mRNA SPCC16C4.05 ; db_xref "SPD:08/08E10" ; systematic_id "SPCC16C4.05" ; colour "7" ; GO "GO:0000171; ribonuclease MRP activity
GO:0004526; ribonuclease P activity
GO:0006364; rRNA processing
GO:0008033; tRNA processing
GO:0005655; nucleolar ribonuclease P complex
GO:0000172; ribonuclease MRP complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL282W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC16C4.05" ; product "RNase P and RNase MRP subunit (predicted)" ;
chromosome3 GeneDB mRNA 669467 670760 . - . mRNA SPCC16C4.06c ; db_xref "SPD:22/22E02" ; systematic_id "SPCC16C4.06c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL212C and YGL063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006400; tRNA modification
GO:0009982; pseudouridine synthase activity
GO:0005634; nucleus" ; gene "SPCC16C4.06c" ; product "tRNA pseudouridine synthase (predicted)" ; EC_number "4.2.1.70" ;
chromosome3 GeneDB mRNA 2193575 2195500 . - . mRNA SPCC830.07c ; systematic_id "SPCC830.07c" ; colour "2" ; gene "psi1 ||| psi ||| SPCC830.07c" ; Alias "psi1" ; db_xref "SPD:18/18A04" ; synonym "psi" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0030544; Hsp70 protein binding
GO:0051082; unfolded protein binding
GO:0006413; translational initiation
GO:0034605; cellular response to heat" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL007C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "psi1" ; product "DNAJ domain protein, involved in translation initiation Psi1" ;
chromosome3 GeneDB mRNA 2096558 2096942 . + . mRNA SPCC576.09 ; systematic_id "SPCC576.09" ; colour "7" ; gene "rps20 ||| SPCC576.09" ; Alias "rps20" ; db_xref "SPD:02/02D09" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome
GO:0042254; ribosome biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHL015W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rps20" ; product "40S ribosomal protein S20 (predicted)" ;
chromosome3 GeneDB mRNA 897682 899226 . - . mRNA SPCC16A11.16c ; systematic_id "SPCC16A11.16c" ; colour "2" ; gene "SPCC16A11.16c" ; Alias "rpn1302" ; db_xref "SPD:23/23G09" ; synonym "rpn13 ||| rpn13b" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR421C; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human ADRM1 ortholog; date=20100908" ; GO "GO:0006511; ubiquitin-dependent protein catabolic process
GO:0008541; proteasome regulatory particle, lid subcomplex
GO:0000502; proteasome complex" ; primary_name "rpn1302" ; product "19S proteasome regulatory subunit Rpn13b" ;
chromosome3 GeneDB mRNA 1392611 1394865 . - . mRNA SPCC1281.06c ; db_xref "SPD:23/23C01" ; systematic_id "SPCC1281.06c" ; colour "7" ; GO "GO:0006633; fatty acid biosynthesis
GO:0004768; stearoyl-CoA 9-desaturase activity
GO:0005789; endoplasmic reticulum membrane
GO:0006636; fatty acid desaturation
GO:0031227; intrinsic to endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; date=20100406 ||| term=orthologous to S. cerevisiae YGL055W; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, conserved in Vertebrates; date=20100824 ||| term=human SCD and SCD5 ortholog; date=20100824" ; gene "SPCC1281.06c" ; product "acyl-coA desaturase (predicted)" ;
chromosome3 GeneDB mRNA 1660188 1662255 . - . mRNA SPCC663.15c ; db_xref "SPD:27/27B12" ; systematic_id "SPCC663.15c" ; colour "10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR097W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=PX domain protein; date=20091018" ; GO "GO:0035091; phophoinositide binding" ; gene "SPCC663.15c" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 1223686 1226925 . - . mRNA SPCC4E9.01c ; systematic_id "SPCC4E9.01c" ; colour "2" ; gene "rec11 ||| SPCC4E9.01c ||| SPCC550.16c" ; Alias "rec11" ; db_xref "SPD:48/48B04" ; synonym "SPCC550.16c" ; GO "GO:0007131; meiotic recombination
GO:0030893; meiotic cohesin complex
GO:0051177; meiotic sister chromatid cohesion
GO:0051177; meiotic sister chromatid cohesion
GO:0045143; homologous chromosome segregation
GO:0042138; meiotic DNA double-strand break formation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, region specific activator of recombination; db_xref=PMID:8299939; cv=misc; date=19700101 ||| term=HEAT repeat; qualifier=inferred from context; date=19700101 ||| term=related to S. pombe psc3; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rec11" ; product "meiotic cohesin complex subunit Rec11" ;
chromosome3 GeneDB mRNA 2035726 2036880 . + . mRNA SPCC1739.05 ; systematic_id "SPCC1739.05" ; colour "7" ; gene "set5 ||| SPCC1739.05" ; Alias "set5" ; db_xref "SPD:13/13F04" ; GO "GO:0018024; histone-lysine N-methyltransferase activity
GO:0016571; histone methylation
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=orthologous to S. cerevisiae YHR207C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "set5" ; product "histone lysine methyltransferase Set5 (predicted)" ;
chromosome3 GeneDB mRNA 1427096 1429021 . + . mRNA SPCC622.14 ; db_xref "SPD:44/44F04" ; systematic_id "SPCC622.14" ; colour "7" ; GO "GO:0005096; GTPase activator activity
GO:0016192; vesicle-mediated transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL204C and YDL226C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC622.14" ; product "GTPase activating protein (predicted)" ;
chromosome3 GeneDB mRNA 375517 378048 . - . mRNA SPCC1682.03c ; systematic_id "SPCC1682.03c" ; colour "8" ; gene "mug174 ||| SPCC1682.03c" ; Alias "mug174" ; db_xref "SPD:46/46B07" ; GO "GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan; date=20081211 ||| term=species distribution, sequence orphan, uncharacterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug174" ; product "meiotically upregulated gene Mug174" ;
chromosome3 GeneDB mRNA 932830 934446 . - . mRNA SPCC24B10.19c ; db_xref "SPD:23/23H10" ; systematic_id "SPCC24B10.19c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC24B10.19c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1601512 1602702 . - . mRNA SPCC777.03c ; db_xref "SPD:44/44A03" ; systematic_id "SPCC777.03c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC11D3.10; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=warning, possible horizontal transfer; date=20100827" ; gene "SPCC777.03c" ; product "nifs homolog, possible cysteine desulfurase" ; note "region appears to be a duplication of a region of chromosome I cosmid c11D3, region encompasses SPCC777.02 & SPC777.03" ;
chromosome3 GeneDB mRNA 2103982 2106290 . - . mRNA SPCC576.15c ; systematic_id "SPCC576.15c" ; colour "2" ; gene "ksg1 ||| SPCC576.15c" ; Alias "ksg1" ; db_xref "SPD:26/26E01" ; GO "GO:0004676; 3-phosphoinositide-dependent protein kinase activity
GO:0005515; protein binding
GO:0031505; cell wall organization and biogenesis
GO:0030437; regulation of ascospore formation
GO:0031137; regulation of conjugation with cellular fusion
GO:0007165; signal transduction" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PKC subfamily; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:10071224; date=19700101 ||| term=orthologous to S. cerevisiae YDR490C and YOL100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ksg1" ; product "serine/threonine protein kinase Ksg1" ;
chromosome3 GeneDB mRNA 819849 820157 . - . mRNA SPCC1393.14 ; Alias "ten1" ; systematic_id "SPCC1393.14" ; colour "2" ; GO "GO:0000781; chromosome, telomeric region
GO:0070188; Stn1-Ten1 complex
GO:0005515; protein binding
GO:0043047; single-stranded telomeric DNA binding
GO:0016233; telomere capping" ; controlled_curation "term=OB fold; date=20070706 ||| term=orthologous to S. cerevisiae YLR010C; date=20070706 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; gene "ten1 ||| SPCC1393.14" ; primary_name "ten1" ; product "nuclear telomere cap complex subunit Ten1" ;
chromosome3 GeneDB mRNA 1318375 1321002 . - . mRNA SPCC1322.14c ; systematic_id "SPCC1322.14c" ; colour "7" ; gene "vtc4 ||| SPCC1322.14c" ; Alias "vtc4" ; db_xref "SPD:37/37G05" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YJL012C; date=19700101 ||| term=SPX domain protein; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0000329; vacuolar membrane
GO:0007034; vacuolar transport
GO:0042144; vacuole fusion, non-autophagic" ; primary_name "vtc4" ; product "vacuolar transporter chaperone (VTC) complex subunit (predicted)" ; reserved_name "vtc4" ;
chromosome3 GeneDB mRNA 93017 94246 . + . mRNA SPCC613.08 ; db_xref "SPD:18/18C01" ; systematic_id "SPCC613.08" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006611; protein export from nucleus
GO:0000055; ribosomal large subunit export from nucleus" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human TOK1 ortholog; date=19700101 ||| term=orthologous to S. cerevisiae YDR361C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC613.08" ; product "CDK regulator, involved in ribosome export (predicted)" ;
chromosome3 GeneDB mRNA 2406373 2407526 . + . mRNA SPCP1E11.08 ; db_xref "SPD:13/13H10" ; systematic_id "SPCP1E11.08" ; colour "7" ; GO "GO:0042273; ribosomal large subunit biogenesis
GO:0005634; nucleus" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YER126C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCP1E11.08" ; product "ribosome biogenesis protein Nsa2 (predicted)" ;
chromosome3 GeneDB mRNA 1002791 1008125 . + . mRNA SPCC895.05 ; systematic_id "SPCC895.05" ; colour "2" ; gene "for3 ||| SPCC895.05" ; Alias "for3" ; db_xref "SPD:30/30G10" ; GO "GO:0003779; actin binding
GO:0005515; protein binding
GO:0007163; establishment and/or maintenance of cell polarity
GO:0051017; actin cable formation
GO:0005515; protein binding
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0051285; cell cortex of cell tip
GO:0005515; protein binding
GO:0061161; regulation of establishment of bipolar cell polarity
GO:0010570; regulation of filamentous growth" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL271C and YIL159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; cv=phenotype; db_xref=PMID:19542312; date=20090706" ; primary_name "for3" ; product "formin For3" ;
chromosome3 GeneDB mRNA 1929190 1931942 . - . mRNA SPCC74.03c ; systematic_id "SPCC74.03c" ; colour "2" ; db_xref "SPD:27/27F02" ; Alias "ssp2" ; synonym "ucp9" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YDR477W; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0031593; polyubiquitin binding
GO:0046015; regulation of transcription by glucose
GO:0007165; signal transduction
GO:0017148; negative regulation of translation
GO:0061161; regulation of establishment of bipolar cell polarity" ; primary_name "ssp2" ; product "serine/threonine protein kinase Ssp2" ;
chromosome3 GeneDB mRNA 2221570 2222203 . + . mRNA SPCC1919.07 ; db_xref "SPD:07/07A06" ; systematic_id "SPCC1919.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1919.07" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1456436 1457491 . + . mRNA SPCC11E10.03 ; systematic_id "SPCC11E10.03" ; colour "2" ; gene "mug1 ||| SPCC11E10.03" ; Alias "mug1" ; db_xref "SPD:16/16B10" ; GO "GO:0005869; dynactin complex
GO:0000132; establishment of mitotic spindle orientation
GO:0045132; meiotic chromosome segregation
GO:0007097; nuclear migration" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; date=20060207 ||| term=orthologous to S. cerevisiae YMR294W; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug1" ; product "dynactin complex subunit, dynamitin (predicted)" ;
chromosome3 GeneDB mRNA 2206281 2207470 . + . mRNA SPCC1919.02 ; db_xref "SPD:17/17C02" ; systematic_id "SPCC1919.02" ; colour "7" ; GO "GO:0005783; endoplasmic reticulum
GO:0006506; GPI anchor biosynthesis
GO:0000030; mannosyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCL052C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1919.02" ; product "pig-X (predicted)" ;
chromosome3 GeneDB mRNA 329593 330581 . - . mRNA SPCC736.09c ; db_xref "SPD:08/08B07" ; systematic_id "SPCC736.09c" ; colour "2" ; GO "GO:0005634; nucleus
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0006303; double-strand break repair via nonhomologous end joining
GO:0006259; DNA metabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=disease associated, cancer; db_xref=PMID:18062930; date=20080829 ||| term=misc, undergoes depletion in translin deficient cells via a translin-dependent proteasome independent pathway; db_xref=PMID:18062930; cv=misc; date=20080829 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TSNAX ortholog; date=20100227" ; gene "SPCC736.09c" ; product "TRAX" ;
chromosome3 GeneDB mRNA 331571 332618 . - . mRNA SPCC736.10c ; systematic_id "SPCC736.10c" ; colour "7" ; gene "SPCC736.10c ||| mrps8" ; Alias "mrps8" ; db_xref "SPD:04/04B02" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005763; mitochondrial small ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR158W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mrps8" ; product "mitochondrial ribosomal protein subunit S8 (predicted)" ;
chromosome3 GeneDB mRNA 1277717 1280899 . - . mRNA SPCC23B6.04c ; systematic_id "SPCC23B6.04c" ; colour "7" ; gene "SPCC23B6.04c" ; note "longer than orthologs, possibly a gene fusion" ; db_xref "SPD:29/29H01" ; GO "GO:0008526; phosphatidylinositol transporter activity
GO:0015914; phospholipid transport
GO:0006696; ergosterol biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL231C and YNL264C; date=19700101 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824" ; product "sec14 cytosolic factor family (predicted)" ;
chromosome3 GeneDB mRNA 2343056 2343890 . - . mRNA SPCC1494.09c ; db_xref "SPD:05/05E04" ; systematic_id "SPCC1494.09c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1494.09c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1238885 1244000 . - . mRNA SPCC645.06c ; systematic_id "SPCC645.06c" ; colour "2" ; db_xref "SPD:39/39C12" ; Alias "rgf3" ; synonym "lad1" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15546915; date=19700101 ||| term=pleckstrin homology domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR425W; date=19700101 ||| term=gene expression, transcriptionally regulated by Ace2; cv=gene_ex; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:16291723; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=genome organization, divergently orientated to functionally related gene; date=20100427 ||| term=target is Rho1; qualifier=activates; db_xref=PMID:15546915; date=20100427" ; GO "; cell division site
; Rho guanyl-nucleotide exchange factor activity
GO:0005515; protein binding
GO:0051666; actin cortical patch localization
GO:0060624; regulation of ascospore wall 1,3-beta- glucan biosynthetic process
GO:0030994; primary cell septum catabolism
GO:0090334; regulation of 1,3-beta-glucan biosynthesis
GO:0035023; regulation of Rho protein signal transduction
GO:0035023; regulation of Rho protein signal transduction
GO:0010590; regulation of cell separation during cytokinesis
GO:0032319; regulation of Rho GTPase activity" ; primary_name "rgf3" ; product "RhoGEF Rgf3" ;
chromosome3 GeneDB mRNA 1053720 1056141 . - . mRNA SPCC1259.11c ; systematic_id "SPCC1259.11c" ; colour "7" ; gene "SPCC1259.11c ||| gyp2" ; Alias "gyp2" ; db_xref "SPD:37/37G02" ; GO "GO:0005097; Rab GTPase activator activity
GO:0032313; regulation of Rab GTPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=GRAM domain; date=19700101 ||| term=orthologous to S. cerevisiae YGR100W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gyp2" ; product "GTPase activating protein Gyp2 (predicted)" ; reserved_name "gyp2" ;
chromosome3 GeneDB mRNA 602995 604260 . + . mRNA SPCC1183.06 ; systematic_id "SPCC1183.06" ; colour "2" ; gene "ung1 ||| SPCC1183.06" ; Alias "ung1" ; db_xref "SPD:17/17B07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML021C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004844; uracil DNA N-glycosylase activity
GO:0006281; DNA repair
GO:0005739; mitochondrion
GO:0005634; nucleus" ; primary_name "ung1" ; product "uracil DNA N-glycosylase Ung1" ; EC_number "3.2.2.-" ;
chromosome3 GeneDB mRNA 390696 391962 . + . mRNA SPCC1682.10 ; systematic_id "SPCC1682.10" ; colour "7" ; gene "rpn8 ||| SPCC1682.10" ; Alias "rpn8" ; db_xref "SPD:15/15B11" ; GO "GO:0005634; nucleus
GO:0008541; proteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0006511; ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle
GO:0004843; ubiquitin-specific protease activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR261C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "rpn8" ; product "19S proteasome regulatory subunit Rpn8 (predicted)" ;
chromosome3 GeneDB mRNA 2192091 2193303 . + . mRNA SPCC830.06 ; db_xref "SPD:10/10G10" ; systematic_id "SPCC830.06" ; colour "7" ; GO "GO:0005955; calcineurin complex
GO:0005737; cytoplasm
GO:0005509; calcium ion binding
GO:0008597; calcium-dependent protein serine/threonine phosphatase regulator activity
GO:0007165; signal transduction
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=EF hand; date=19700101 ||| term=orthologous to S. cerevisiae YKL190W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC830.06" ; product "calcineurin regulatory subunit (predicted)" ;
chromosome3 GeneDB mRNA 1748297 1752918 . - . mRNA SPCC1450.11c ; systematic_id "SPCC1450.11c" ; colour "2" ; gene "cek1 ||| SPCC1450.11c" ; Alias "cek1" ; db_xref "SPD:39/39E01" ; GO "GO:0007346; regulation of progression through mitotic cell cycle
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0061161; regulation of establishment of bipolar cell polarity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8065367; date=19700101 ||| term=orthologous to S. cerevisiae YFL033C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cek1" ; product "serine/threonine protein kinase Cek1" ;
chromosome3 GeneDB mRNA 1724306 1726051 . + . mRNA SPCC191.11 ; systematic_id "SPCC191.11" ; colour "2" ; gene "inv1 ||| SPCC191.11" ; Alias "inv1" ; db_xref "SPD:45/45G05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, glycosylated; cv=pt_mod; qualifier=N-linked|predicted; db_xref=PMID:9535817; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL162W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005576; extracellular region
GO:0000324; vacuole
GO:0004564; beta-fructofuranosidase activity
GO:0034484; raffinose catabolic process
GO:0005987; sucrose catabolic process" ; primary_name "inv1" ; product "beta-fructofuranosidase" ; EC_number "3.2.1.26" ;
chromosome3 GeneDB mRNA 2279333 2280286 . + . mRNA SPCC1840.11 ; systematic_id "SPCC1840.11" ; colour "7" ; db_xref "SPD:05/05E11" ; Alias "csl4" ; synonym "SPCC965.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL232W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0000177; cytoplasmic exosome (RNase complex)
GO:0000176; nuclear exosome (RNase complex)
GO:0005730; nucleolus
GO:0000175; 3'-5'-exoribonuclease activity
GO:0003723; RNA binding
GO:0006364; 35S primary transcript processing
GO:0061013; nuclear-transcribed mRNA catabolism" ; primary_name "csl4" ; product "exosome subunit Csl4 (predicted)" ;
chromosome3 GeneDB mRNA 2082257 2083357 . + . mRNA SPCC576.02 ; db_xref "SPD:08/08D11" ; systematic_id "SPCC576.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIR030C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110" ; colour "10" ; gene "SPCC576.02" ; product "hydantoin racemase family (predicted)" ;
chromosome3 GeneDB mRNA 322550 325081 . + . mRNA SPCC736.06 ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:46/46A03" ; systematic_id "SPCC736.06" ; colour "7" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004815; aspartate-tRNA ligase activity
GO:0000049; tRNA binding
GO:0006422; aspartyl-tRNA aminoacylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL104W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; gene "SPCC736.06" ; product "mitochondrial aspartate-tRNA ligase (predicted)" ;
chromosome3 GeneDB mRNA 2120626 2122630 . + . mRNA SPCC126.03 ; systematic_id "SPCC126.03" ; colour "2" ; gene "pus1 ||| SPCC126.03" ; Alias "pus1" ; obsolete_name "lps1" ; db_xref "SPD:35/35E07" ; synonym "SPCC126.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL212C and YGL063W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0006400; tRNA modification
GO:0009982; pseudouridine synthase activity
GO:0005634; nucleus" ; primary_name "pus1" ; product "tRNA pseudouridine synthase Lsp1" ; EC_number "5.4.99.-" ;
chromosome3 GeneDB mRNA 556303 558226 . - . mRNA SPCC962.06c ; systematic_id "SPCC962.06c" ; colour "2" ; gene "bpb1 ||| sf1 ||| SPCC962.06c" ; Alias "bpb1" ; db_xref "SPD:36/36E11" ; synonym "sf1" ; GO "GO:0000243; commitment complex
GO:0000349; generation of catalytic spliceosome for first transesterification step
GO:0003723; RNA binding" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-CCHC type (zinc knuckle); date=19700101 ||| term=KH domain; date=19700101 ||| term=orthologous to S. cerevisiae YLR116W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "bpb1" ; product "zinc finger protein Bpb1" ;
chromosome3 GeneDB mRNA 1166506 1167990 . + . mRNA SPCC4B3.05c ; systematic_id "SPCC4B3.05c" ; colour "7" ; gene "SPCC4B3.05c ||| hem12" ; Alias "hem12" ; db_xref "SPD:44/44B02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060721 ||| term=orthologous to S. cerevisiae YDR047W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0004853; uroporphyrinogen decarboxylase activity
GO:0006783; heme biosynthesis" ; primary_name "hem12" ; product "uroporphyrinogen decarboxylase Hem12 (predicted)" ; EC_number "4.1.1.37" ; reserved_name "hem12" ;
chromosome3 GeneDB mRNA 2032921 2034351 . - . mRNA SPCC1739.04c ; db_xref "SPD:14/14A04" ; systematic_id "SPCC1739.04c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; gene "SPCC1739.04c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 149153 150472 . - . mRNA SPCC320.09 ; systematic_id "SPCC320.09" ; colour "7" ; gene "hem15 ||| SPCC320.09" ; Alias "hem15" ; db_xref "SPD:23/23A04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, porphyria; date=20060725 ||| term=orthologous to S. cerevisiae YOR176W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0006783; heme biosynthesis
GO:0004325; ferrochelatase activity
GO:0051186; cofactor metabolic process" ; primary_name "hem15" ; product "ferrochelatase (predicted)" ; EC_number "4.99.1.1" ; reserved_name "hem15" ;
chromosome3 GeneDB mRNA 200020 201331 . + . mRNA SPCC1235.11 ; db_xref "SPD:11/11D08" ; systematic_id "SPCC1235.11" ; colour "10" ; GO "GO:0005739; mitochondrion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL080W; date=19700101 ||| term=human BRP44L ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1235.11" ; product "mitochondrial protein, human BRP44L ortholog" ;
chromosome3 GeneDB mRNA 2290925 2292136 . - . mRNA SPCC965.05c ; systematic_id "SPCC965.05c" ; colour "2" ; gene "thp1 ||| SPCC965.05c" ; Alias "thp1" ; db_xref "SPD:14/14A10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006281; DNA repair
GO:0004844; uracil DNA N-glycosylase activity" ; primary_name "thp1" ; product "uracil DNA N-glycosylase Thp1" ; EC_number "3.2.2.-" ;
chromosome3 GeneDB mRNA 2046412 2047388 . - . mRNA SPCC1739.09c ; systematic_id "SPCC1739.09c" ; colour "7" ; gene "cox13 ||| SPCC1739.09c" ; Alias "cox13" ; db_xref "SPD:07/07G09" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL191W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005751; mitochondrial respiratory chain complex IV
GO:0004129; cytochrome-c oxidase activity
GO:0030234; enzyme regulator activity
GO:0009060; aerobic respiration" ; primary_name "cox13" ; product "cytochrome c oxidase subunit VIa (predicted)" ; EC_number "1.9.3.1" ;
chromosome3 GeneDB mRNA 2384697 2385693 . - . mRNA SPCC1827.05c ; db_xref "SPD:13/13F10" ; systematic_id "SPCC1827.05c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005730; nucleolus
GO:0003723; RNA binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=rrm RNA recognition motif; date=19700101 ||| term=orthologous to S. cerevisiae YNL110C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1827.05c" ; product "nucleolar RNA-binding protein NIFK (predicted)" ;
chromosome3 GeneDB mRNA 2134446 2135714 . + . mRNA SPCC126.10 ; systematic_id "SPCC126.10" ; colour "7" ; gene "iah1 ||| SPCC126.10" ; Alias "iah1" ; db_xref "SPD:09/09A02" ; GO "GO:0006083; acetate metabolism
GO:0016788; hydrolase activity, acting on ester bonds" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR126C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "iah1" ; product "isoamyl acetate hydrolytic enzyme Iah1 (predicted)" ;
chromosome3 GeneDB mRNA 1547888 1549069 . - . mRNA SPCC1753.03c ; systematic_id "SPCC1753.03c" ; colour "2" ; gene "rec7 ||| SPCC1753.03c" ; note "deletion mutant results in frequent occurrence of two-spored asci (PMID 11156975) ||| deletion mutant results in frequent nondisjunction of homologous chromosomes at the first meiotic division (PMID 11156975)" ; Alias "rec7" ; db_xref "SPD:18/18G05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:1339382; date=19700101 ||| term=gene expression, antisense transcript detected; db_xref=PMID:11156975; cv=gene_ex; date=19700101 ||| term=orthologous to S. cerevisiae YMR133W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213" ; GO "GO:0030998; linear element
GO:0005634; nucleus
GO:0045143; homologous chromosome segregation
GO:0007131; meiotic recombination" ; primary_name "rec7" ; product "meiotic recombination protein Rec7" ;
chromosome3 GeneDB mRNA 599310 602886 . - . mRNA SPCC1183.05c ; systematic_id "SPCC1183.05c" ; colour "2" ; gene "lig4 ||| SPCC1183.05c" ; Alias "lig4" ; db_xref "SPD:30/30E05" ; GO "GO:0032807; DNA ligase IV complex
GO:0005634; nucleus
GO:0005524; ATP binding
GO:0003910; DNA ligase (ATP) activity
GO:0006303; double-strand break repair via nonhomologous end joining" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, LIG4 syndrome; date=20070104 ||| term=BRCT domain; date=19700101 ||| term=orthologous to S. cerevisiae YOR005C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lig4" ; product "DNA ligase Lig4" ;
chromosome3 GeneDB mRNA 1643767 1644565 . - . mRNA SPCC663.05c ; systematic_id "SPCC663.05c" ; colour "2" ; gene "cia1 ||| SPCC663.05c ||| asf1" ; Alias "cia1" ; db_xref "SPD:10/10A01" ; synonym "asf1" ; GO "GO:0005678; chromatin assembly complex
GO:0042393; histone binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030528; transcription regulator activity
GO:0006335; DNA replication-dependent nucleosome assembly
GO:0006336; DNA replication-independent nucleosome assembly
GO:0006342; chromatin silencing
GO:0016573; histone acetylation
GO:0043486; histone exchange
GO:0006337; nucleosome disassembly
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, histone chaperone; db_xref=PMID:11856374; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YJL115W; date=19700101 ||| term=Hir protein binding region; db_xref=PMID:14680630; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cia1" ; product "histone chaperone Cia1" ;
chromosome3 GeneDB mRNA 2320320 2324320 . - . mRNA SPCC1494.11c ; systematic_id "SPCC1494.11c" ; colour "13" ; gene "SPCC1494.11c" ; note "LTR retrotransposon ||| tf2-type" ; Alias "Tf2-13-pseudo" ; obsolete_name "Tf-pseudoIII" ; pseudo "_no_value" ; controlled_curation "term=tf2-type transposon; date=19700101 ||| term=warning, frameshifted; cv=warning; date=19700101" ; primary_name "Tf2-13-pseudo" ; product "retrotransposable element: pseudo" ;
chromosome3 GeneDB mRNA 1800821 1801445 . + . mRNA SPCC285.04 ; db_xref "SPD:02/02G02" ; systematic_id "SPCC285.04" ; colour "10" ; GO "GO:0005496; steroid binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC285.04" ; product "transthyretin (predicted)" ;
chromosome3 GeneDB mRNA 1580123 1581694 . - . mRNA SPCC162.04c ; systematic_id "SPCC162.04c" ; colour "12" ; gene "wtf13 ||| SPCC162.04c" ; obsolete_name "wtf12" ; Alias "wtf13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf13" ; product "wtf element Wtf13" ;
chromosome3 GeneDB mRNA 529075 531386 . + . mRNA SPCP31B10.05 ; systematic_id "SPCP31B10.05" ; colour "2" ; gene "SPCP31B10.05 ||| tdp1" ; Alias "tdp1" ; db_xref "SPD:45/45D01" ; GO "GO:0017005; tyrosyl-DNA phosphodiesterase activity
GO:0005634; nucleus
GO:0000012; single-strand break repair" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR223C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, spinocerebellar ataxia; date=20090209 ||| term=human SCAN1 ortholog; date=20090209 ||| term=phenotype, sensitive to CPT; cv=phenotype; qualifier=deletion; db_xref=PMID:19197239; date=20090216 ||| term=phenotype, sensitive to H202; qualifier=deletion; cv=phenotype;db_xref=PMID:19197239; date=20090216 ||| term=phenotype, die in G0 with an apoptotic-like phenotype; qualifier=deletion; db_xref=PMID:19197239; cv=phenotype; date=20090216 ||| term=phenotype, protects against physiological oxidative damage in G0; qualifier=deletion; db_xref=PMID:19197239; cv=phenotype; date=20090216 ||| term=gene expression, antisense transcript detected; cv=gene_ex; date=20091213 ||| term=disease associated, neurological disorders; date=20091217" ; primary_name "tdp1" ; product "tyrosyl-DNA phosphodiesterase Tdp1" ;
chromosome3 GeneDB mRNA 245964 247628 . + . mRNA SPCC794.03 ; db_xref "SPD:34/34H07" ; systematic_id "SPCC794.03" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0015171; amino acid transmembrane transporter activity
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; gene "SPCC794.03" ; product "amino acid permease (predicted)" ;
chromosome3 GeneDB mRNA 1463176 1464338 . - . mRNA SPCC11E10.06c ; db_xref "SPD:16/16H10" ; systematic_id "SPCC11E10.06c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006400; tRNA modification
GO:0033588; Elongator holoenzyme complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL101W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC11E10.06c" ; product "elongator complex subunit Elp4 (predicted)" ;
chromosome3 GeneDB mRNA 1446343 1447392 . - . mRNA SPCC61.04c ; db_xref "SPD:15/15F10" ; systematic_id "SPCC61.04c" ; colour "7" ; GO "GO:0000139; Golgi membrane
GO:0051020; GTPase binding
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0048280; vesicle fusion with Golgi apparatus
GO:0005789; endoplasmic reticulum membrane
GO:0017137; Rab GTPase binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Yip1 family; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YGR172C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC61.04c" ; product "Rab GTPase binding (predicted)" ;
chromosome3 GeneDB mRNA 1187735 1191376 . - . mRNA SPCC550.03c ; db_xref "SPD:39/39B10" ; systematic_id "SPCC550.03c" ; colour "7" ; GO "GO:0005730; nucleolus
GO:0005737; cytoplasm
GO:0006402; mRNA catabolism
GO:0006417; regulation of translation
GO:0003724; RNA helicase activity
GO:0055087; Ski complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=DEAD/DEAH box helicase; date=19700101 ||| term=orthologous to S. cerevisiae YLR398C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC550.03c" ; product "Ski complex RNA helicase Ski2 (predicted)" ;
chromosome3 GeneDB mRNA 337829 339567 . - . mRNA SPCC736.12c ; systematic_id "SPCC736.12c" ; colour "2" ; db_xref "SPD:44/44H11" ; Alias "mmi1" ; GO "GO:0033620; Mei2 nuclear dot
GO:0003723; RNA binding
GO:0003723; RNA binding
GO:0003729; mRNA binding
GO:0005515; protein binding
GO:0033621; mRNA catabolic process, meiosis- specific transcripts
GO:0045835; negative regulation of meiosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR374C; date=19700101 ||| term=name description, Meiotic mRNA Interception; cv=name_description; db_xref=PMID:16823445; date=20071011 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=target is meu26; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is crs1; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is mug9; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is rec8; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is bqt1; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is mug1; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is ssm4; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is mug1; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is spo5; qualifier=mRNA; db_xref=PMID:16823445; date=20100123 ||| term=target is rec25; qualifier=mRNA; db_xref=PMID:16823445; date=20100123" ; primary_name "mmi1" ; product "YTH family protein Mmi1" ;
chromosome3 GeneDB mRNA 1953336 1955372 . + . mRNA SPCC18.02 ; db_xref "SPD:20/20H01" ; systematic_id "SPCC18.02" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0022857; transmembrane transporter activity
GO:0016021; integral to membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824" ; gene "SPCC18.02" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 1582904 1583782 . - . mRNA SPCC162.03 ; db_xref "SPD:11/11H08" ; systematic_id "SPCC162.03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC162.03" ; product "short chain dehydrogenase (predicted)" ;
chromosome3 GeneDB mRNA 977216 978482 . + . mRNA SPCC1795.10c ; db_xref "SPD:07/07H11" ; systematic_id "SPCC1795.10c" ; colour "7" ; GO "GO:0030134; ER to Golgi transport vesicle
; cytoplasm
GO:0030173; integral to Golgi membrane
GO:0030176; integral to endoplasmic reticulum membrane
GO:0031965; nuclear membrane
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0045053; protein retention in Golgi" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR181W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1795.10c" ; product "Sed5 Vesicle Protein Svp26 (predicted)" ;
chromosome3 GeneDB mRNA 1338711 1340098 . - . mRNA SPCC132.05c ; systematic_id "SPCC132.05c" ; synonym "SPCC338.19" ; pseudo "_no_value" ; colour "13" ; gene "SPCC132.05c ||| SPCC338.19" ; product "trichothecene 3-O-acetyltransferase pseudogene" ;
chromosome3 GeneDB mRNA 1986390 1988150 . - . mRNA SPCC18.17c ; db_xref "SPD:23/23F04" ; systematic_id "SPCC18.17c" ; colour "7" ; GO "GO:0000502; proteasome complex
GO:0031145; anaphase-promotong complex proteasomal ubiquitin-dependent protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=human PSMD5 ortholog; date=20091106 ||| term=species distribution, conserved in Eukaryotes; date=20091106 ||| term=species distribution, conserved in Eukaryotes only; date=20091106 ||| term=species distribution, conserved in Vertebrates; date=20091106 ||| term=species distribution, conserved in Metazoa; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100805" ; gene "SPCC18.17c" ; product "26S proteasome non-ATPase regulatory subunit (predicted)" ;
chromosome3 GeneDB mRNA 1609353 1611126 . + . mRNA SPCC777.07 ; systematic_id "SPCC777.07" ; colour "7" ; gene "SPCC777.07" ; Alias "omh3" ; db_xref "SPD:19/19D02" ; GO "GO:0000026; alpha-1,2-mannosyltransferase activity
GO:0000032; cell wall mannoprotein biosynthesis
GO:0035269; protein amino acid O-linked mannosylation
GO:0000139; Golgi membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR099W and YKR061W and YJL139C and YDR483W and YBR205W and YBR199W and YPL053C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:19054127; cv=phenotype; date=20100525" ; primary_name "omh3" ; product "alpha-1,2-mannosyltransferase Omh3 (predicted)" ; EC_number "2.4.1.-" ;
chromosome3 GeneDB mRNA 1558224 1559240 . - . mRNA SPCC162.10 ; systematic_id "SPCC162.10" ; colour "2" ; gene "ppk33 ||| SPCC162.10" ; Alias "ppk33" ; db_xref "SPD:15/15B09" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0004674; protein serine/threonine kinase activity
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "ppk33" ; product "serine/threonine protein kinase Ppk33 (predicted)" ;
chromosome3 GeneDB mRNA 667171 668069 . + . mRNA SPCC16C4.04 ; db_xref "SPD:12/12C10" ; systematic_id "SPCC16C4.04" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC16C4.04" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 811668 814526 . + . mRNA SPCC1393.08 ; db_xref "SPD:35/35A09" ; systematic_id "SPCC1393.08" ; colour "7" ; GO "GO:0043565; sequence-specific DNA binding
GO:0000978; RNA polymerase II regulatory transcription factor site sequence specific DNA binding" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-GATA type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC1393.08" ; product "transcription factor, zf-GATA type (predicted)" ;
chromosome3 GeneDB mRNA 1876173 1877661 . + . mRNA SPCC1223.14 ; systematic_id "SPCC1223.14" ; colour "7" ; gene "SPCC1223.14 ||| SPCC297.01" ; db_xref "SPD:18/18H11" ; synonym "SPCC297.01" ; GO "GO:0004107; chorismate synthase activity
GO:0009073; aromatic amino acid family biosynthesis
GO:0005737; cytoplasm" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL148W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; product "chorismate synthase (predicted)" ; EC_number "4.2.3.5" ;
chromosome3 GeneDB mRNA 1232122 1233221 . + . mRNA SPCC645.04 ; systematic_id "SPCC645.04" ; colour "2" ; gene "nse3 ||| SPCC645.04" ; Alias "nse3" ; db_xref "SPD:14/14D01" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000724; double-strand break repair via homologous recombination
GO:0000706; meiotic DNA double-strand break processing
GO:0000070; mitotic sister chromatid segregation
GO:0048478; replication fork protection" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15331764; date=19700101 ||| term=modification, sumoylated; cv=pt_mod; db_xref=PMID:15601841; date=19700101 ||| term=orthologous to S. cerevisiae YDR288W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:15331764; date=20100708" ; primary_name "nse3" ; product "Smc5-6 complex non-SMC subunit Nse3" ;
chromosome3 GeneDB mRNA 2153648 2155298 . - . mRNA SPCC1620.06c ; db_xref "SPD:18/18H04" ; systematic_id "SPCC1620.06c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBL068W and YER099C and YHL011C and YKL181W and YOL061W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004749; ribose phosphate diphosphokinase activity
GO:0006189; 'de novo' IMP biosynthesis
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0000105; histidine biosynthesis
GO:0006166; purine ribonucleoside salvage
GO:0000162; tryptophan biosynthesis
GO:0005737; cytoplasm" ; gene "SPCC1620.06c" ; product "ribose-phosphate pyrophosphokinase (predicted)" ; EC_number "2.7.6.1" ;
chromosome3 GeneDB mRNA 1793562 1794440 . - . mRNA SPCC1442.15c ; systematic_id "SPCC1442.15c" ; colour "2" ; gene "cox18 ||| SPCC1442.15c" ; Alias "cox18" ; db_xref "SPD:42/42D09" ; GO "GO:0031305; integral to mitochondrial inner membrane
GO:0008535; respiratory chain complex IV assembly
GO:0051204; protein insertion into mitochondrial membrane
GO:0032977; membrane insertase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; db_xref=PMID:16911509; date=20070201 ||| term=orthologous to S. cerevisiae YGR062C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=complementation, functionally complements S. cerevisiae COX18; db_xref=PMID:16911509; date=20101012" ; primary_name "cox18" ; product "mitochondrial inner membrane protein Cox18" ;
chromosome3 GeneDB mRNA 2141162 2143307 . + . mRNA SPCC126.14 ; systematic_id "SPCC126.14" ; colour "7" ; gene "prp18 ||| SPCC126.14" ; Alias "prp18" ; db_xref "SPD:16/16F08" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR006W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "prp18" ; product "U5 snRNP-associated protein Prp18 (predicted)" ;
chromosome3 GeneDB mRNA 1665576 1669701 . - . mRNA SPCC1902.01 ; systematic_id "SPCC1902.01" ; colour "2" ; gene "gaf1 ||| SPCC1902.01 ||| SPCC417.01c" ; note "orthologous to S. cerevisiae YFL021W but missing conserved N-terminal domain" ; Alias "gaf1" ; db_xref "SPD:37/37H01" ; synonym "SPCC417.01c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-GATA type; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=gene expression, transcriptionally regulates genes involved in nitrogen metabolism; qualifier=predicted; cv=gene_ex; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0003677; DNA binding
GO:0005634; nucleus
GO:0043193; positive regulation of gene-specific transcription" ; primary_name "gaf1" ; product "transcription factor Gaf1" ;
chromosome3 GeneDB mRNA 430465 432221 . + . mRNA SPCC306.11 ; db_xref "SPD:11/11C01" ; systematic_id "SPCC306.11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC306.11" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1440089 1442001 . - . mRNA SPCC61.01c ; systematic_id "SPCC61.01c" ; colour "2" ; gene "str2 ||| SPCC61.01c ||| SPCC622.20c" ; Alias "str2" ; db_xref "SPD:26/26F03" ; synonym "SPCC622.20c" ; GO "GO:0016021; integral to membrane
GO:0015344; siderophore-iron (ferrioxamine) uptake transporter activity
GO:0033214; iron assimilation by chelation and transport
GO:0006879; iron ion homeostasis
GO:0015892; siderophore-iron transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YHL040C and YHL047C and YOL158C and YKR106W and YCL073C and YEL065W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "str2" ; product "siderophore-iron transporter Str2" ;
chromosome3 GeneDB mRNA 91663 92872 . + . mRNA SPCC613.07 ; db_xref "SPD:43/43G01" ; systematic_id "SPCC613.07" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0016074; snoRNA metabolism" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=orthologous to S. cerevisiae YHR040W; date=19700101 ||| term=zf-HIT; date=20080502 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC613.07" ; product "snoRNA biogenesis protein (predicted)" ;
chromosome3 GeneDB mRNA 848575 849837 . + . mRNA SPCC63.07 ; db_xref "SPD:14/14E11" ; systematic_id "SPCC63.07" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006400; tRNA modification
GO:0008193; tRNA guanylyltransferase activity
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPCC63.07" ; product "tRNA guanylyltransferase (predicted)" ; EC_number "2.7.7.-" ;
chromosome3 GeneDB mRNA 188100 188592 . + . mRNA SPCC1235.16 ; Alias "vma21" ; systematic_id "SPCC1235.16" ; colour "7" ; controlled_curation "term=orthologous to S. cerevisiae YGR105W; date=20090417 ||| term=species distribution, conserved in Vertebrates; date=20090417 ||| term=species distribution, conserved in Metazoa; date=20090417 ||| term=species distribution, conserved in Eukaryotes; date=20090417 ||| term=species distribution, conserved in Eukaryotes only; date=20090417 ||| term=warning, new gene; cv=warning; date=20090417 ||| term=disease associated, X-linked myopathy with excessive autophagy; date=20090511" ; GO "GO:0030176; integral to endoplasmic reticulum membrane
GO:0070070; proton-transporting V-type ATPase complex assembly" ; primary_name "vma21" ; gene "vma21 ||| SPCC1235.16" ; product "vacuolar H+-ATPase assembly protein Vma21 (predicted)" ;
chromosome3 GeneDB mRNA 2305902 2307542 . + . mRNA SPCC965.12 ; db_xref "SPD:20/20A02" ; systematic_id "SPCC965.12" ; colour "10" ; GO "GO:0008233; peptidase" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC965.12" ; product "dipeptidyl peptidase (predicted)" ;
chromosome3 GeneDB mRNA 1022480 1025286 . + . mRNA SPCC825.01 ; db_xref "SPD:28/28H04" ; systematic_id "SPCC825.01" ; colour "7" ; GO "GO:0016887; ATPase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=human ABCF1 ortholog; date=20080313 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20110106" ; gene "SPCC825.01" ; product "ribosome biogenesis ATPase, Arb family ABCF1- like (predicted)" ;
chromosome3 GeneDB mRNA 108005 108337 . - . mRNA SPCC330.19c ; db_xref "SPD:52/52B12" ; systematic_id "SPCC330.19c" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPCC330.19c" ; product "sequence orphan" ; note "added Sept 4 2002, confirmed by EST, val" ;
chromosome3 GeneDB mRNA 921391 921946 . + . mRNA SPCC24B10.12 ; systematic_id "SPCC24B10.12" ; colour "7" ; gene "SPCC24B10.12" ; Alias "cgi121" ; db_xref "SPD:05/05C05" ; GO "GO:0019901; protein kinase binding
GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0000723; telomere maintenance
GO:0000408; EKC/KEOPS protein complex
GO:0045944; positive regulation of transcription from RNA polymerase II promoter
GO:0000781; chromosome, telomeric region" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML036W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human TPRKB ortholog; date=20100909" ; primary_name "cgi121" ; product "EKC/KEOPS complex subunit Cgi121 (predicted)" ;
chromosome3 GeneDB mRNA 423752 426353 . - . mRNA SPCC306.09c ; systematic_id "SPCC306.09c" ; colour "2" ; gene "cap1 ||| cap ||| SPCC306.09c" ; Alias "cap1" ; db_xref "SPD:35/35G03" ; synonym "cap" ; GO "GO:0003779; actin binding
GO:0008092; cytoskeletal protein binding
GO:0007010; cytoskeleton organization and biogenesis
GO:0030437; sporulation (sensu Fungi)
GO:0000747; conjugation with cellular fusion
GO:0009267; cellular response to starvation
GO:0008179; adenylate cyclase binding
GO:0045761; regulation of adenylate cyclase activity
GO:0030479; actin cortical patch" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:1550959; date=19700101 ||| term=orthologous to S. cerevisiae YNL138W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:1550959; date=20100712" ; primary_name "cap1" ; product "adenylyl cyclase-associated protein Cap1" ;
chromosome3 GeneDB mRNA 400761 401421 . + . mRNA SPCC1682.14 ; systematic_id "SPCC1682.14" ; colour "2" ; gene "rpl1902 ||| rpl19-2 ||| SPCC1682.14" ; Alias "rpl1902" ; db_xref "SPD:06/06C10" ; synonym "rpl19-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR084C-A and YBL027W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl1902" ; product "60S ribosomal protein L19" ;
chromosome3 GeneDB mRNA 334103 337070 . + . mRNA SPCC736.11 ; systematic_id "SPCC736.11" ; colour "2" ; gene "ago1 ||| csp9 ||| SPCC736.11" ; Alias "ago1" ; db_xref "SPD:29/29F08" ; synonym "csp9" ; GO "GO:0033167; ARC complex
GO:0030958; RITS complex
GO:0005721; centric heterochromatin
GO:0031934; mating-type region heterochromatin
GO:0005724; nuclear telomeric heterochromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0090052; regulation of chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0000070; mitotic sister chromatid segregation
GO:0051570; regulation of histone H3-K9 methylation
GO:0031048; small RNA-mediated chromatin silencing
GO:0033168; RNA interference, conversion of ds siRNA to ss siRNA
GO:0005515; protein binding
GO:0006808; regulation of nitrogen utilization
GO:0010553; negative regulation of gene specific transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc, RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner; db_xref=PMID:15607976; cv=misc; date=20050322 ||| term=PAZ domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12733640; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=complementation, functionally complemented by human hAGO2; db_xref=PMID:14699070; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15632061; date=20090110 ||| term=phenotype, siRNAs homologous to outer repeats undetectable; cv=phenotype; date=20100318 ||| term=phenotype, growth defect, slow growth with ammonia nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=phenotype, growth defect, normal growth with proline nitrogen source; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=gene expression, transcriptionally represses per1; db_xref=PMID:20404084; date=20100504" ; primary_name "ago1" ; product "argonaute" ;
chromosome3 GeneDB mRNA 1227227 1229041 . + . mRNA SPCC4E9.02 ; systematic_id "SPCC4E9.02" ; colour "2" ; gene "cig1 ||| SPCC4E9.02 ||| SPCC645.01" ; Alias "cig1" ; db_xref "SPD:19/19H11" ; synonym "SPCC645.01" ; GO "GO:0000079; regulation of cyclin-dependent protein kinase activity
GO:0016538; cyclin-dependent protein kinase regulator activity
GO:0007346; regulation of progression through mitotic cell cycle" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cyclin; date=19700101 ||| term=B-type cyclin; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YDL155W and YLR210W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "cig1" ; product "cyclin Cig1" ;
chromosome3 GeneDB mRNA 709302 715415 . - . mRNA SPCC18B5.01c ; systematic_id "SPCC18B5.01c" ; colour "2" ; db_xref "SPD:49/49H06" ; Alias "bfr1" ; synonym "hba2 ||| SPCPJ732.04c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797; date=20060721 ||| term=ABC transporter family; date=19700101 ||| term=PDR subfamily; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YDR011W and YNR070W and YPL058C and YOR328W and YOR153W and YDR406W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0005886; plasma membrane
GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport
GO:0042626; ATPase activity, coupled to transmembrane movement of substances" ; primary_name "bfr1" ; product "brefeldin A efflux transporter Bfr1" ;
chromosome3 GeneDB mRNA 831178 832070 . + . mRNA SPCC2H8.04 ; db_xref "SPD:11/11F02" ; systematic_id "SPCC2H8.04" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=ACN9 family; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Fungi only; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, orthologs cannot be distinguished; date=20100820" ; colour "10" ; gene "SPCC2H8.04" ; product "ACN9 family protein" ;
chromosome3 GeneDB mRNA 1486167 1488586 . + . mRNA SPCC188.07 ; systematic_id "SPCC188.07" ; colour "2" ; db_xref "SPD:51/51E09" ; Alias "ccq1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=diploid; db_xref=PMID:15546621; date=20100727 ||| term=HEAT repeat; evidence=TAS; db_xref=PMID:15546621; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YDR295C and YPR179C; date=19700101 ||| term=name description, Coiled Coil protein Quantitatively enriched; date=20091112" ; GO "GO:0070188; Stn1-Ten1 complex
GO:0000781; chromosome, telomeric region
GO:0000781; chromosome, telomeric region
GO:0005654; nucleoplasm
GO:0005816; spindle pole body
GO:0031933; telomeric heterochromatin
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034613; cellular protein localization
GO:0006348; chromatin silencing at telomere
GO:0045132; meiotic chromosome segregation
GO:0048239; negative regulation of DNA recombination at the telomeres
GO:0032206; positive regulation of telomere maintenance
GO:0045141; telomere clustering
GO:0016233; telomere end protection
GO:0000723; telomere maintenance" ; primary_name "ccq1" ; product "telomere maintenance protein Ccq1" ;
chromosome3 GeneDB mRNA 506415 506875 . - . mRNA SPCC970.05 ; systematic_id "SPCC970.05" ; colour "2" ; gene "rpl3601 ||| rpl36-1 ||| SPCC970.05" ; Alias "rpl3601" ; db_xref "SPD:04/04B07" ; synonym "rpl36-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR194W and YPL249C-A; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rpl3601" ; product "60S ribosomal protein L36" ;
chromosome3 GeneDB mRNA 1409385 1409992 . + . mRNA SPCC622.07 ; db_xref "SPD:02/02H04" ; systematic_id "SPCC622.07" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC622.07" ; product "dubious" ;
chromosome3 GeneDB mRNA 364204 365478 . - . mRNA SPCC594.05c ; systematic_id "SPCC594.05c" ; colour "2" ; gene "spp1 ||| spf1 ||| SPCC594.05c" ; Alias "spf1" ; db_xref "SPD:20/20D08" ; synonym "spp1" ; GO "GO:0006338; chromatin remodeling
GO:0048188; COMPASS complex
GO:0000790; nuclear chromatin
GO:0051569; regulation of histone H3-K4 methylation
GO:0019787; small conjugating protein ligase activity" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-PHD finger; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12488447; date=19700101 ||| term=orthologous to S. cerevisiae YPL138C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene name conflict; date=20100723" ; primary_name "spf1" ; product "Set1C PHD Finger protein Spf1" ;
chromosome3 GeneDB mRNA 2049201 2052557 . - . mRNA SPCC1739.11c ; systematic_id "SPCC1739.11c" ; colour "2" ; gene "cdc11 ||| SPCC1739.11c" ; Alias "cdc11" ; db_xref "SPD:30/30B01" ; GO "GO:0005816; spindle pole body
GO:0071937; barrier septum formation involved in cell cycle cytokinesis
GO:0033205; cell cycle cytokinesis
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005198; structural molecule activity
GO:0031028; septation initiation signaling
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:11676915; date=19700101 ||| term=phenotype, cell morphology, elongated cells; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=phenotype, multinucleate; cv=phenotype; db_xref=PMID:958201; date=20100705 ||| term=leucine-rich repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YOR373W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:12546793; date=20090213 ||| term=human CEP1 and CEP110 ortholog; date=20100208 ||| term=disease associated, cancer; date=20100217 ||| term=target of Cdc7; qualifier=phosphorylated_by; db_xref=PMID:12546793; date=20100826 ||| term=target of Par1; qualifier=dephosphorylated_by; db_xref=PMID:12546793; date=20100826" ; primary_name "cdc11" ; product "SIN component scaffold protein, centriolin ortholog Cdc11" ;
chromosome3 GeneDB mRNA 652608 656346 . + . mRNA SPCC5E4.06 ; systematic_id "SPCC5E4.06" ; colour "2" ; gene "smc6 ||| rad18 ||| SPCC5E4.06" ; Alias "smc6" ; db_xref "SPD:48/48D06" ; synonym "rad18" ; GO "GO:0030915; Smc5-Smc6 complex
GO:0006281; DNA repair
GO:0005634; nucleus
GO:0046982; protein heterodimerization activity
GO:0006974; response to DNA damage stimulus
GO:0000724; double-strand break repair via homologous recombination
GO:0005515; protein binding
GO:0005515; protein binding
GO:0048478; replication fork protection" ; controlled_curation "term=phenotype, inviable; cv=phenotype; date=19700101 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:8524274; date=20100727 ||| term=SMC family; date=19700101 ||| term=orthologous to S. cerevisiae YLR383W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, sumoylated; cv=pt_mod; db_xref=PMID:15601841; date=19700101" ; primary_name "smc6" ; product "Smc5-6 complex SMC subunit Smc6" ;
chromosome3 GeneDB mRNA 612898 613940 . - . mRNA SPCC1183.09c ; systematic_id "SPCC1183.09c" ; colour "2" ; gene "pmp31 ||| SPCC1183.09c ||| mug75" ; Alias "pmp31" ; db_xref "SPD:02/02G11" ; synonym "mug75" ; GO "GO:0005886; plasma membrane
GO:0030003; cation homeostasis
GO:0006812; cation transport
GO:0034605; cellular response to heat
GO:0042391; regulation of membrane potential
GO:0006970; response to osmotic stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16603158; date=20060412 ||| term=orthologous to S. cerevisiae YDR276C; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "pmp31" ; product "plasma membrane proteolipid Pmp31" ;
chromosome3 GeneDB mRNA 1351692 1354440 . - . mRNA SPCC338.13 ; systematic_id "SPCC338.13" ; colour "7" ; gene "SPCC338.13 ||| cog4" ; Alias "cog4" ; db_xref "SPD:38/38A07" ; GO "GO:0006886; intracellular protein transport
GO:0017119; Golgi transport complex
GO:0006891; intra-Golgi vesicle-mediated transport
GO:0000301; retrograde transport, vesicle recycling within Golgi" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cog4" ; product "Golgi transport complex subunit Cog4 (predicted)" ;
chromosome3 GeneDB mRNA 2125925 2127454 . + . mRNA SPCC126.06 ; systematic_id "SPCC126.06" ; colour "7" ; gene "twf1 ||| SPCC126.06" ; Alias "twf1" ; db_xref "SPD:20/20F05" ; GO "GO:0030479; actin cortical patch
GO:0003785; actin monomer binding
GO:0042989; sequestering of actin monomers" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=cofilin/tropomyosin family; date=19700101 ||| term=orthologous to S. cerevisiae YGR080W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "twf1" ; product "twinfilin (predicted)" ;
chromosome3 GeneDB mRNA 929475 930246 . - . mRNA SPCC24B10.16c ; db_xref "SPD:01/01H09" ; systematic_id "SPCC24B10.16c" ; colour "8" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPCC24B10.16c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1887224 1887995 . - . mRNA SPCC737.02c ; systematic_id "SPCC737.02c" ; colour "7" ; gene "qcr7 ||| SPCC737.02c" ; Alias "qcr7" ; db_xref "SPD:03/03C05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR529C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005743; mitochondrial inner membrane
GO:0005750; respiratory chain complex III (sensu Eukaryota)
GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0017062; cytochrome bc(1) complex assembly
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c" ; primary_name "qcr7" ; product "ubiquinol-cytochrome-c reductase complex subunit 6 (predicted)" ; EC_number "1.10.2.2" ;
chromosome3 GeneDB mRNA 825030 826540 . + . mRNA SPCC1393.13 ; db_xref "SPD:23/23B08" ; systematic_id "SPCC1393.13" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR027W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c6orf211 ortholog; date=20100728" ; colour "10" ; gene "SPCC1393.13" ; product "DUF89 family protein" ;
chromosome3 GeneDB mRNA 959281 963972 . - . mRNA SPCC1742.01 ; systematic_id "SPCC1742.01" ; colour "8" ; gene "SPCPB16A4.07c ||| SPCC1742.01 ||| SPCC1795.13" ; Alias "SPCPB16A4.07c" ; db_xref "SPD:50/50A12" ; synonym "SPCC1795.13 ||| SPCPB16A4.07c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=gene expression, transcriptionally regulated by Srb8; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=gene expression, transcriptionally regulated by Srb9; qualifier=repressed_by; db_xref=PMID:12738880; cv=gene_ex; date=20080828 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=protein sequence feature, repeat containing; date=20100731" ; GO "GO:0009986; cell surface" ; primary_name "SPCPB16A4.07c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 697605 698599 . - . mRNA SPCC16C4.16c ; db_xref "SPD:05/05D11" ; systematic_id "SPCC16C4.16c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Metazoa; date=20100806 ||| term=species distribution, conserved in Vertebrates; date=20100806 ||| term=species distribution, conserved in Eukaryotes only; date=20100806 ||| term=human c17orf85 ortholog; date=20100806" ; colour "10" ; gene "SPCC16C4.16c" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 55579 56029 . + . mRNA SPCC757.06 ; db_xref "SPD:03/03H11" ; systematic_id "SPCC757.06" ; controlled_curation "term=warning, gene structure may be incorrect; cv=warning; date=20100325 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC757.06" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1408164 1408511 . + . mRNA SPCC622.05 ; db_xref "SPD:02/02B11" ; systematic_id "SPCC622.05" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC622.05" ; product "dubious" ;
chromosome3 GeneDB mRNA 525941 526711 . - . mRNA SPCP31B10.03c ; systematic_id "SPCP31B10.03c" ; colour "2" ; gene "med31 ||| soh1 ||| sep10 ||| SPCP31B10.03c" ; Alias "med31" ; db_xref "SPD:03/03D03" ; synonym "soh1 ||| sep10" ; GO "GO:0016592; Srb-mediator complex
GO:0016592; mediator complex
GO:0016592; mediator complex
GO:0016455; RNA polymerase II transcription mediator activity
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, pleiotropic effects; qualifier=deletion; cv=phenotype; date=19700101 ||| term=orthologous to S. cerevisiae YGL127C; date=19700101 ||| term=phenotype, sterile; qualifier=deletion; cv=phenotype; db_xref=PMID:15356001; date=20070706 ||| term=phenotype, septation defects; db_xref=PMID:10392445; date=20070706 ||| term=phenotype, colony morphology, flocculation; cv=phenotype; db_xref=PMID:18310102; date=20080729 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:15829570; date=20090110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:17922236; date=20090110" ; primary_name "med31" ; product "mediator complex subunit Med31" ;
chromosome3 GeneDB mRNA 1245212 1249336 . + . mRNA SPCC645.07 ; systematic_id "SPCC645.07" ; colour "2" ; gene "rgf1 ||| SPCC645.07" ; Alias "rgf1" ; db_xref "SPD:30/30E12" ; GO "GO:0000935; barrier septum
GO:0051285; cell cortex of cell tip
GO:0030428; cell septum
GO:0051286; cell tip
GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0005089; Rho guanyl-nucleotide exchange factor activity
GO:0005515; protein binding
GO:0051666; actin cortical patch localization
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0035025; positive regulation of Rho protein signal transduction
GO:2000247; positive regulation of establishment or maintenance of bipolar cell polarity involved in cell shaping
GO:0090334; regulation of 1,3-beta-glucan biosynthesis
GO:0032319; regulation of Rho GTPase activity
GO:0008360; regulation of cell shape" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16291723; date=20061128 ||| term=pleckstrin homology domain; cv=protein_family; date=20061128 ||| term=orthologous to S. cerevisiae YGR070W and YLR371W; date=19700101 ||| term=human ARHGER12 ortholog; date=20100218 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=target is Rho1; date=20100831 ||| term=genome organization, divergently orientated to functionally related gene; date=20100902" ; primary_name "rgf1" ; product "RhoGEF for Rho1, Rgf1" ;
chromosome3 GeneDB mRNA 786422 790614 . - . mRNA SPCC1020.02 ; systematic_id "SPCC1020.02" ; colour "2" ; gene "spc7 ||| SPCC1020.02" ; db_xref "SPD:30/30F05" ; Alias "spc7" ; GO "GO:0000941; inner kinetochore of condensed nuclear chromosome
GO:0005515; protein binding
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0051010; microtubule plus-end binding
GO:0000070; mitotic sister chromatid segregation
GO:0031617; NMS complex
GO:0034613; cellular protein localization
GO:0000779; condensed chromosome, pericentric region
GO:0019236; response to pheromone" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15371542; date=19700101 ||| term=protein sequence feature, coiled-coil; qualifier=region; date=19700101 ||| term=orthologous to S. cerevisiae YGL093W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, S. Pombe Centromere; date=20100909" ; primary_name "spc7" ; product "kinetochore protein Spc7" ;
chromosome3 GeneDB mRNA 2263967 2265456 . + . mRNA SPCC1840.04 ; systematic_id "SPCC1840.04" ; colour "2" ; gene "SPCC1840.04 ||| pca1" ; Alias "pca1" ; db_xref "SPD:24/24A08" ; GO "GO:0005634; nucleus
GO:0004197; cysteine-type endopeptidase activity
GO:0051603; proteolysis involved in cellular protein catabolic process
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR197W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=name description, Pombe CAspase 1; cv=name_description; date=20091019 ||| term=phenotype, microtubule organization defects; qualifier=overexpression; db_xref=PMID:15797925; date=20100706" ; primary_name "pca1" ; product "metacaspase Pca1" ;
chromosome3 GeneDB mRNA 2124166 2125706 . - . mRNA SPCC126.05c ; systematic_id "SPCC126.05c" ; colour "7" ; gene "SPCC126.05c ||| mrpl17" ; Alias "mrpl17" ; db_xref "SPD:17/17E12" ; GO "GO:0003735; structural constituent of ribosome
GO:0006412; translation
GO:0005762; mitochondrial large ribosomal subunit" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL252C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "mrpl17" ; product "mitochondrial ribosomal protein subunit L17 (predicted)" ;
chromosome3 GeneDB mRNA 226336 228830 . - . mRNA SPCC548.06c ; systematic_id "SPCC548.06c" ; colour "7" ; gene "ght8 ||| SPCC548.06c" ; Alias "ght8" ; db_xref "SPD:34/34E10" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "ght8" ; product "hexose transporter Ght8 (predicted)" ;
chromosome3 GeneDB mRNA 1191695 1193182 . - . mRNA SPCC550.04c ; systematic_id "SPCC550.04c" ; colour "7" ; gene "gpi2 ||| SPCC550.04c" ; Alias "gpi2" ; db_xref "SPD:17/17H05" ; GO "GO:0006506; GPI anchor biosynthesis
GO:0000506; glycosylphosphatidylinositol-N- acetylglu cosaminyltransferase( GPI-GnT)complex
GO:0017176; phosphatidylinositol N- acetylglucosaminyltransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL076W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gpi2" ; product "pig-C (predicted)" ;
chromosome3 GeneDB mRNA 1994202 1999428 . - . mRNA SPCC290.03c ; systematic_id "SPCC290.03c" ; colour "2" ; gene "nup186 ||| SPCC290.03c" ; Alias "nup186" ; db_xref "SPD:31/31A09" ; GO "GO:0031965; nuclear membrane
GO:0005643; nuclear pore
GO:0051301; cell division
GO:0006913; nucleocytoplasmic transport
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:15116432; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:15116432; date=20100729 ||| term=orthologous to S. cerevisiae YJL039C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "nup186" ; product "nucleoporin Nup186" ;
chromosome3 GeneDB mRNA 483585 484739 . + . mRNA SPCC364.02c ; systematic_id "SPCC364.02c" ; colour "2" ; gene "bis1 ||| SPCC364.02c" ; Alias "bis1" ; db_xref "SPD:18/18C06" ; GO "GO:0031965; nuclear membrane
GO:0046982; protein heterodimerization activity
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, DiGeorge syndrome; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "bis1" ; product "stress response protein Bis1" ;
chromosome3 GeneDB mRNA 1615079 1616133 . - . mRNA SPCC777.10c ; systematic_id "SPCC777.10c" ; colour "2" ; gene "ubc12 ||| SPCC777.10c" ; Alias "ubc12" ; db_xref "SPD:15/15G05" ; GO "GO:0045116; protein neddylation
GO:0019787; small conjugating protein ligase activity
GO:0019788; NEDD8 ligase activity
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:10880460; date=20100708 ||| term=orthologous to S. cerevisiae YLR306W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ubc12" ; product "NEDD8-conjugating enzyme Ubc12" ;
chromosome3 GeneDB mRNA 1300640 1300954 . - . mRNA SPCC1322.07c ; systematic_id "SPCC1322.07c" ; colour "8" ; gene "SPCC1322.07c ||| mug150" ; db_xref "SPD:01/01F07" ; Alias "mug150" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=gene expression, expressed during meiosis; db_xref=PMID:16303567; date=20100607" ; primary_name "mug150" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 243855 244969 . + . mRNA SPCC794.02 ; systematic_id "SPCC794.02" ; colour "12" ; gene "SPCC794.02" ; obsolete_name "wtf4" ; db_xref "SPD:51/51C12" ; Alias "wtf5" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf5" ; product "wtf element Wtf5" ;
chromosome3 GeneDB mRNA 1368919 1369344 . + . mRNA SPCC338.03c ; systematic_id "SPCC338.03c" ; colour "6" ; gene "SPCC338.03c" ; product "dubious" ;
chromosome3 GeneDB mRNA 2020201 2021357 . + . mRNA SPCC1906.04 ; Alias "wtf20" ; systematic_id "SPCC1906.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; colour "12" ; gene "wtf20 ||| SPCC1906.04" ; primary_name "wtf20" ; product "wtf element Wtf20" ;
chromosome3 GeneDB mRNA 1646645 1647396 . - . mRNA SPCC663.07c ; systematic_id "SPCC663.07c" ; pseudo "_no_value" ; colour "13" ; gene "SPCC663.07c" ; product "short chain dehydrogenase pseudogene" ;
chromosome3 GeneDB mRNA 1535446 1537866 . + . mRNA SPCC584.04 ; systematic_id "SPCC584.04" ; colour "2" ; gene "sup35 ||| SPCC584.04 ||| erf3" ; Alias "sup35" ; db_xref "SPD:46/46E02" ; synonym "erf3" ; GO "GO:0005829; cytosol
GO:0005525; GTP binding
GO:0046982; protein heterodimerization activity
GO:0003747; translation release factor activity
GO:0006415; translational termination
GO:0018444; translation release factor complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR172W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=complementation, functionally complements S. cerevisiae SUP35; db_xref=PMID:9701287; date=20101012" ; primary_name "sup35" ; product "translation release factor class II eRF3" ;
chromosome3 GeneDB mRNA 952577 953786 . - . mRNA SPCPB16A4.05c ; db_xref "SPD:41/41G01" ; systematic_id "SPCPB16A4.05c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0019627; urea metabolic process" ; colour "7" ; gene "SPCPB16A4.05c" ; product "urease accessory protein UREG (predicted)" ;
chromosome3 GeneDB mRNA 163074 165664 . + . mRNA SPCC320.04c ; db_xref "SPD:29/29A01" ; systematic_id "SPCC320.04c" ; controlled_curation "term=EF hand; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YAL048C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005741; mitochondrial outer membrane
GO:0016192; vesicle-mediated transport
GO:0003924; GTPase activity
GO:0007005; mitochondrion organization and biogenesis
GO:0005525; GTP binding
GO:0005509; calcium ion binding
GO:0007264; small GTPase mediated signal transduction" ; gene "SPCC320.04c" ; product "GTPase Gem1 (predicted)" ;
chromosome3 GeneDB mRNA 72907 75492 . + . mRNA SPCC757.12 ; db_xref "SPD:26/26D05" ; systematic_id "SPCC757.12" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=modification, glycosylated; qualifier=N-linked; cv=pt_mod; date=20060611 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20060611 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0009986; cell surface
; cell wall
GO:0009897; external side of plasma membrane
GO:0004556; alpha-amylase activity
GO:0008360; regulation of cell shape
GO:0009272; cell wall biosynthesis (sensu Fungi)
GO:0044247; cellular polysaccharide catabolism
GO:0046379; extracellular polysaccharide metabolic process" ; gene "SPCC757.12" ; product "alpha-amylase homolog (predicted)" ; EC_number "3.2.1.1" ;
chromosome3 GeneDB mRNA 1831952 1834097 . + . mRNA SPCC285.17 ; systematic_id "SPCC285.17" ; colour "2" ; gene "spp27 ||| uaf30 ||| SPCC285.17" ; Alias "spp27" ; db_xref "SPD:16/16F11" ; synonym "uaf30" ; GO "GO:0000500; RNA polymerase I upstream activating factor complex
GO:0003701; RNA polymerase I transcription factor activity
GO:0005515; protein binding
GO:0006360; transcription from RNA polymerase I promoter" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR295W and YMR233W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824 ||| term=species distribution, conserved in Eukaryotes only; date=20100824 ||| term=species distribution, conserved in Metazoa; date=20100824 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; primary_name "spp27" ; product "RNA polymerase I upstream activation factor complex subunit Spp27" ;
chromosome3 GeneDB mRNA 741542 742530 . + . mRNA SPCC14G10.01 ; systematic_id "SPCC14G10.01" ; colour "7" ; gene "SPCC18B5.12 ||| SPCC14G10.01" ; note "SPBC18B5.12 was a typo" ; Alias "SPCC18B5.12" ; obsolete_name "SPBC18B5.12" ; db_xref "SPD:09/09D01" ; synonym "SPCC18B5.12" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR196C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0004140; dephospho-CoA kinase activity
GO:0015937; coenzyme A biosynthesis
GO:0005524; ATP binding
GO:0031965; nuclear membrane
GO:0005783; endoplasmic reticulum
GO:0005789; endoplasmic reticulum membrane" ; primary_name "SPCC18B5.12" ; product "dephospho-CoA kinase (predicted)" ; EC_number "2.7.1.24" ;
chromosome3 GeneDB mRNA 1056471 1058189 . - . mRNA SPCC1259.12c ; db_xref "SPD:45/45E12" ; systematic_id "SPCC1259.12c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0008536; Ran GTPase binding
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0007039; vacuolar protein catabolism
GO:0034657; GID complex
GO:0045721; negative regulation of gluconeogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=CTLH domain; date=19700101 ||| term=orthologous to S. cerevisiae YGL227W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RANBP9 and RANBP10 ortholog; date=20100908" ; gene "SPCC1259.12c" ; product "Ran GTPase binding protein (predicted)" ;
chromosome3 GeneDB mRNA 1464773 1466006 . - . mRNA SPCC11E10.07c ; db_xref "SPD:19/19F10" ; systematic_id "SPCC11E10.07c" ; colour "7" ; GO "GO:0003743; translation initiation factor activity
GO:0006413; translational initiation
GO:0005851; eukaryotic translation initiation factor 2B complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, leukoencephalopathy; date=20060926 ||| term=orthologous to S. cerevisiae YKR026C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20060926" ; gene "SPCC11E10.07c" ; product "translation initiation factor eIF2B alpha subunit (predicted)" ;
chromosome3 GeneDB mRNA 1619525 1622409 . + . mRNA SPCC777.13 ; systematic_id "SPCC777.13" ; colour "2" ; gene "vps35 ||| SPCC777.13" ; Alias "vps35" ; db_xref "SPD:47/47A03" ; GO "GO:0005768; endosome
GO:0030904; retromer complex
GO:0030904; retromer complex
GO:0006886; intracellular protein transport
GO:0042147; retrograde transport, endosome to Golgi
GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL154C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "vps35" ; product "retromer complex subunit Vps35" ;
chromosome3 GeneDB mRNA 2037670 2039961 . - . mRNA SPCC1739.06c ; db_xref "SPD:24/24A12" ; systematic_id "SPCC1739.06c" ; colour "7" ; GO "GO:0006783; heme biosynthesis
GO:0009086; methionine biosynthesis
GO:0004851; uroporphyrin-III C-methyltransferase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR069W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; gene "SPCC1739.06c" ; product "uroporphyrin methyltransferase (predicted)" ;
chromosome3 GeneDB mRNA 1316327 1317995 . + . mRNA SPCC1322.13 ; systematic_id "SPCC1322.13" ; colour "2" ; gene "ade6 ||| min1 ||| SPCC1322.13" ; Alias "ade6" ; db_xref "SPD:34/34G10" ; synonym "min1" ; GO "GO:0004638; phosphoribosylaminoimidazole carboxylase activity
GO:0006144; purine base metabolism
GO:0005737; cytoplasm
GO:0006189; 'de novo' IMP biosynthesis" ; controlled_curation "term=orthologous to S. cerevisiae YOR128C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ade6" ; product "phosphoribosylaminoimidazole carboxylase Ade6" ; EC_number "4.1.1.21" ;
chromosome3 GeneDB mRNA 1852712 1854512 . - . mRNA SPCC1223.07c ; systematic_id "SPCC1223.07c" ; colour "7" ; gene "SPCC1223.07c ||| drs1" ; Alias "drs1" ; db_xref "KEGG:MAP00260; ||| KEGG:MAP00970; ||| SPD:45/45H07" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLL018C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=OB fold; date=20091106" ; GO "GO:0006422; aspartyl-tRNA aminoacylation
GO:0004815; aspartate-tRNA ligase activity
GO:0005737; cytoplasm
GO:0005524; ATP binding" ; primary_name "drs1" ; product "cytoplasmic aspartate-tRNA ligase Drs1 (predicted)" ; EC_number "6.1.1.12" ;
chromosome3 GeneDB mRNA 268038 269479 . - . mRNA SPCC794.09c ; systematic_id "SPCC794.09c" ; colour "2" ; gene "SPCC794.09c ||| ef1a-a" ; Alias "ef1a-a" ; obsolete_name "tef1-e ||| ef1a-e" ; db_xref "SPD:44/44D05" ; GO "GO:0005853; eukaryotic translation elongation factor 1 complex
GO:0003746; translation elongation factor activity
GO:0006414; translational elongation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR080W and YBR118W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "ef1a-a" ; product "translation elongation factor EF-1 alpha Ef1a-a" ;
chromosome3 GeneDB mRNA 611851 612565 . - . mRNA SPCC1183.08c ; systematic_id "SPCC1183.08c" ; colour "2" ; gene "rpl101 ||| rpl10-1 ||| rpl10a-1 ||| SPCC1183.08c" ; Alias "rpl101" ; db_xref "SPD:42/42F10" ; synonym "rpl1-1 ||| rpl10a-1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL220W and YGL135W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl101" ; product "60S ribosomal protein L10a" ;
chromosome3 GeneDB mRNA 1746153 1748022 . - . mRNA SPCC1450.10c ; db_xref "SPD:35/35D02" ; systematic_id "SPCC1450.10c" ; colour "7" ; GO "GO:0008901; ferredoxin hydrogenase activity
GO:0016226; iron-sulfur cluster assembly
GO:0005829; cytosol" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL240C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC1450.10c" ; product "iron hydrogenase (predicted)" ;
chromosome3 GeneDB mRNA 196547 199350 . - . mRNA SPCC1235.10c ; systematic_id "SPCC1235.10c" ; colour "2" ; gene "sec6 ||| SPCC1235.10c" ; Alias "sec6" ; db_xref "SPD:29/29B04" ; GO "GO:0000145; exocyst
GO:0006887; exocytosis
GO:0006886; intracellular protein transport
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0000920; cell separation during cytokinesis
GO:0051285; cell cortex of cell tip
GO:0032153; cell division site" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL068C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec6" ; product "exocyst complex subunit Sec6" ;
chromosome3 GeneDB mRNA 1229646 1230429 . + . mRNA SPCC645.02 ; systematic_id "SPCC645.02" ; colour "7" ; gene "SPCC645.02 ||| gep4" ; Alias "gep4" ; db_xref "SPD:06/06A02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR100C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0032049; cardiolipin biosynthetic process
GO:0005759; mitochondrial matrix
GO:0006655; phosphatidylglycerol metabolism
GO:0008962; phosphatidylglycerolphosphate phosphatase activity" ; primary_name "gep4" ; product "mitochondrial matrix PGP phosphatase involved in cardiolipin biosynthesis Gep4 (predicted)" ;
chromosome3 GeneDB mRNA 1399379 1400476 . + . mRNA SPCC1281.08 ; systematic_id "SPCC1281.08" ; colour "12" ; db_xref "SPD:17/17C01" ; Alias "wtf11" ; synonym "meu24" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; db_xref=PMID:11376151; date=20100605" ; primary_name "wtf11" ; product "wtf element Wtf11" ;
chromosome3 GeneDB mRNA 1635107 1640498 . + . mRNA SPCC663.03 ; systematic_id "SPCC663.03" ; colour "2" ; gene "pmd1 ||| SPCC663.03" ; Alias "pmd1" ; db_xref "SPD:30/30F04" ; GO "GO:0005886; plasma membrane
GO:0042626; ATPase activity, coupled to transmembrane movement of substances
GO:0005524; ATP binding
GO:0006855; multidrug transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ABC transporter family; db_xref=PMID:16849797; date=20070216 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=20070216 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16849797|PMID:9037770; date=20070216 ||| term=orthologous to S. cerevisiae YKL209C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "pmd1" ; product "leptomycin efflux transporter Pmd1" ;
chromosome3 GeneDB mRNA 698807 699908 . + . mRNA SPCC16C4.17 ; systematic_id "SPCC16C4.17" ; colour "2" ; gene "mug123 ||| SPCC16C4.17" ; Alias "mug123" ; db_xref "SPD:08/08D06" ; GO "GO:0030437; sporulation (sensu Fungi)" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303" ; primary_name "mug123" ; product "meiotically upregulated gene Mug123" ;
chromosome3 GeneDB mRNA 1763310 1765237 . - . mRNA SPCC1450.16c ; systematic_id "SPCC1450.16c" ; colour "7" ; gene "SPCC1450.16c" ; db_xref "SPD:25/25A07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR313C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0004806; triacylglycerol lipase activity
GO:0019433; triacylglycerol catabolic process" ; clustalx_file "clustalx/chromosome3.contig.seq.00001.out" ; product "triacylglycerol lipase (predicted)" ; EC_number "3.1.1.3" ;
chromosome3 GeneDB mRNA 1264462 1266937 . - . mRNA SPCC23B6.01c ; db_xref "SPD:27/27E09" ; systematic_id "SPCC23B6.01c" ; colour "7" ; GO "GO:0008142; oxysterol binding
GO:0006696; ergosterol biosynthetic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR001W and YKR003W and YOR237W and YPL145C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC23B6.01c" ; product "oxysterol binding protein (predicted)" ;
chromosome3 GeneDB mRNA 2277890 2278303 . + . mRNA SPCC1840.10 ; systematic_id "SPCC1840.10" ; colour "7" ; gene "lsm8 ||| SPCC1840.10" ; Alias "lsm8" ; db_xref "SPD:03/03B02" ; GO "GO:0030532; small nuclear ribonucleoprotein complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0006364; rRNA processing" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "lsm8" ; product "U6 snRNP-associated protein Lsm8 (predicted)" ;
chromosome3 GeneDB mRNA 1992605 1994035 . + . mRNA SPCC290.02 ; systematic_id "SPCC290.02" ; colour "7" ; gene "rpc34 ||| SPCC290.02" ; Alias "rpc34" ; db_xref "SPD:16/16G10" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNR003C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005666; DNA-directed RNA polymerase III complex
GO:0003899; DNA-directed RNA polymerase activity
GO:0006383; transcription from RNA polymerase III promoter" ; primary_name "rpc34" ; product "DNA-directed RNA polymerase III complex subunit Rpc34 (predicted)" ; EC_number "2.7.7.6" ;
chromosome3 GeneDB mRNA 1662552 1665136 . - . mRNA SPCC1902.02 ; systematic_id "SPCC1902.02" ; colour "10" ; gene "SPCC1902.02 ||| SPCC663.16c ||| mug72" ; Alias "mug72" ; db_xref "SPD:26/26F02" ; synonym "SPCC663.16c" ; GO "GO:0032153; cell division site
GO:0051286; cell tip" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR251W and YPL032C; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "mug72" ; product "oxidoreductase (predicted)" ;
chromosome3 GeneDB mRNA 1014396 1016211 . - . mRNA SPCC895.08c ; db_xref "SPD:23/23G05" ; systematic_id "SPCC895.08c" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to A. fumigatus Afu2g02260; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC895.08c" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 1058615 1059770 . - . mRNA SPCC1259.15c ; systematic_id "SPCC1259.15c" ; colour "2" ; gene "ubc11 ||| ubcdp ||| ubcp4 ||| SPCC1259.15c" ; note "S. cerevisiae E2-C, is not a functional homolog of this E2 because it is not required for the degradation of mitotic cyclin" ; Alias "ubc11" ; db_xref "SPD:43/43D10" ; synonym "ubcdp ||| ubcp4" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9154838; date=19700101 ||| term=orthologous to S. cerevisiae YOR339C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is Cdc13; db_xref=PMID:9154838; date=20100826" ; GO "GO:0005737; cytoplasm
GO:0004842; ubiquitin conjugating enzyme activity
GO:0000070; mitotic sister chromatid segregation
GO:0008054; cyclin catabolism
GO:0016567; protein ubiquitination
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0007346; regulation of progression through mitotic cell cycle" ; primary_name "ubc11" ; product "ubiquitin conjugating enzyme E2-C, Ubc11" ; EC_number "6.3.2.19" ;
chromosome3 GeneDB mRNA 910392 911931 . + . mRNA SPCC24B10.06 ; db_xref "SPD:09/09C01" ; systematic_id "SPCC24B10.06" ; controlled_curation "term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=modification, GPI attachment site; cv=pt_mod; qualifier=predicted; db_xref=PMID:12845604; date=20100104" ; colour "8" ; GO "GO:0009986; cell surface" ; gene "SPCC24B10.06" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2097328 2098866 . - . mRNA SPCC576.10c ; systematic_id "SPCC576.10c" ; colour "7" ; gene "rpt3 ||| SPCC576.10c" ; Alias "rpt3" ; db_xref "SPD:18/18E08" ; GO "GO:0016887; ATPase activity
GO:0004175; endopeptidase activity
GO:0006511; ubiquitin-dependent protein catabolism
GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YDR394W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpt3" ; product "19S proteasome regulatory subunit Rpt3 (predicted)" ;
chromosome3 GeneDB mRNA 545850 549206 . - . mRNA SPCC962.02c ; systematic_id "SPCC962.02c" ; colour "2" ; db_xref "SPD:29/29H06" ; Alias "bir1" ; synonym "cut17 ||| pbh1 ||| SPCP31B10.10c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cut; cv=phenotype; date=20091118 ||| term=localization, kinetochore to spindle relocalization or Bir1 is dependent on Cdk inactivation and an intact microtubular network; db_xref=PMID:16824200; date=20060814 ||| term=orthologous to S. cerevisiae YJR089W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=disease associated, cancer; date=20100217 ||| term=human BIRC2 and BIRC3 ortholog; date=20100217 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0032133; chromosome passenger complex
GO:0000778; condensed nuclear chromosome kinetochore
GO:0005634; nucleus
GO:0051233; spindle midzone
GO:0005819; spindle
GO:0033205; cell cycle cytokinesis
GO:0034501; protein localization to kinetochore
GO:0034501; protein localization to kinetochore
GO:0034501; protein localization to kinetochore
GO:0030261; chromosome condensation
GO:0030261; chromosome condensation
GO:0000070; mitotic sister chromatid segregation
GO:0000070; mitotic sister chromatid segregation
GO:0007094; mitotic spindle checkpoint
GO:0000022; mitotic spindle elongation
GO:0034501; protein localization to kinetochore
GO:0034503; protein localization to nucleolar rDNA repeats
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding" ; primary_name "bir1" ; product "survivin, Bir1" ;
chromosome3 GeneDB mRNA 540240 540791 . - . mRNA SPCP31B10.08c ; systematic_id "SPCP31B10.08c" ; colour "2" ; gene "rpl35a ||| rpl33 ||| SPCP31B10.08c" ; Alias "rpl35a" ; db_xref "SPD:05/05B02" ; synonym "rpl33" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR234C and YPL143W; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl35a" ; product "60S ribosomal protein L35a" ;
chromosome3 GeneDB mRNA 549700 552120 . - . mRNA SPCC962.03c ; systematic_id "SPCC962.03c" ; colour "2" ; gene "cut15 ||| SPCC962.03c" ; Alias "cut15" ; db_xref "SPD:26/26A09" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0005525; GTP binding
GO:0030674; protein binding, bridging
GO:0008565; protein transporter activity
GO:0000087; M phase of mitotic cell cycle
GO:0006607; NLS-bearing substrate import into nucleus
GO:0030261; chromosome condensation
GO:0006606; protein import into nucleus
GO:0006606; protein import into nucleus
GO:0006606; protein import into nucleus
GO:0007346; regulation of progression through mitotic cell cycle
GO:0033554; cellular response to stress" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=importin family; date=19700101 ||| term=armadillo repeat protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9740803; date=19700101 ||| term=orthologous to S. cerevisiae YNL189W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=phenotype, cut; cv=phenotype; date=20091118" ; primary_name "cut15" ; product "karyopherin Cut15" ;
chromosome3 GeneDB mRNA 56779 58525 . - . mRNA SPCC757.07c ; systematic_id "SPCC757.07c" ; colour "2" ; db_xref "SPD:24/24H11" ; Alias "ctt1" ; synonym "cta1" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, acatalasia; date=20060725 ||| term=orthologous to S. cerevisiae YDR256C and YGR088W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, peroxisomal disorders; date=20091123" ; GO "GO:0004096; catalase activity
GO:0005759; mitochondrial matrix
GO:0005782; peroxisomeal matrix
GO:0034599; cellular response to oxidative stress
GO:0042744; hydrogen peroxide catabolic process" ; primary_name "ctt1" ; product "catalase" ; EC_number "1.11.1.6" ;
chromosome3 GeneDB mRNA 99966 102222 . - . mRNA SPCC613.12c ; systematic_id "SPCC613.12c" ; colour "2" ; db_xref "SPD:26/26G02" ; Alias "raf1" ; synonym "dos1 ||| cmc1 ||| clr8" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:16040243; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Rik1- associated factor; cv=name_description; date=20100126 ||| term=name description, Delocalization Of Swi6; cv=name_description; date=20100126 ||| term=name description, Cullin- associated Methyltransferase complex subunit; date=20100318" ; GO "GO:0043494; Rik1-E3 ubiquitin ligase complex
GO:0031934; mating-type region heterochromatin
GO:0005634; nucleus
GO:0005515; protein binding
GO:0005515; protein binding
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0045132; meiotic chromosome segregation
GO:0051754; meiotic sister chromatid cohesion, centromeric
GO:0000070; mitotic sister chromatid segregation
GO:0051572; negative regulation of histone H3-K4 methylation
GO:0051574; positive regulation of histone H3-K9 methylation
GO:0034613; cellular protein localization
GO:0031494; regulation of mating type switching
GO:0031048; small RNA-mediated chromatin silencing
GO:0045141; telomere clustering
GO:0031618; nuclear centric heterochromatin
GO:0035391; maintenance of chromatin silencing at silent mating-type cassette" ; primary_name "raf1" ; product "Rik1-associated factor Raf1" ;
chromosome3 GeneDB mRNA 248551 250194 . - . mRNA SPCC794.04c ; db_xref "SPD:34/34E11" ; systematic_id "SPCC794.04c" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPAC11D3.05 and SPBC530.02; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; gene "SPCC794.04c" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 371230 371885 . + . mRNA SPCC1682.01 ; systematic_id "SPCC1682.01" ; colour "7" ; gene "qcr9 ||| SPCC1682.01" ; Alias "qcr9" ; db_xref "SPD:03/03H07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR183C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750; mitochondrial respiratory chain complex III
GO:0016226; iron-sulfur cluster assembly
GO:0009060; aerobic respiration" ; primary_name "qcr9" ; product "ubiquinol-cytochrome-c reductase complex subunit 9 (predicted)" ; EC_number "1.10.2.2" ;
chromosome3 GeneDB mRNA 664542 665951 . + . mRNA SPCC16C4.03 ; systematic_id "SPCC16C4.03" ; colour "2" ; gene "pin1 ||| SPCC16C4.03" ; Alias "pin1" ; db_xref "SPD:07/07G06" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WW domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11707530; date=19700101 ||| term=orthologous to S. cerevisiae YJR017C; date=19700101 ||| term=complementation, functionally complements S. cerevisiae ESS1; db_xref=PMID:11707530; cv=complementation; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005634; nucleus
GO:0003755; peptidyl-prolyl cis-trans isomerase activity
GO:0031124; mRNA 3'-end processing
GO:0006457; protein folding
GO:0007346; regulation of progression through mitotic cell cycle
GO:0003711; transcription elongation regulator activity
GO:0000122; negative regulation of transcription form RNA polymerase II promoter
GO:0006369; termination of RNA polymerase II transcription" ; primary_name "pin1" ; product "peptidyl-prolyl cis-trans isomerase Pin1" ; EC_number "5.2.1.8" ;
chromosome3 GeneDB mRNA 1328975 1330626 . + . mRNA SPCC132.02 ; systematic_id "SPCC132.02" ; colour "2" ; gene "hst2 ||| SPCC132.02" ; Alias "hst2" ; db_xref "SPD:43/43H01" ; GO "GO:0005721; centromeric heterochromatin
GO:0016585; chromatin remodeling complex
GO:0005737; cytoplasm
GO:0031934; mating-type region heterochromatin
GO:0000790; nuclear chromatin
GO:0005634; nucleus
GO:0033553; rDNA heterochromatin
GO:0031933; telomeric heterochromatin
GO:0017136; NAD-dependent histone deacetylase activity
GO:0016566; specific transcriptional repressor activity
GO:0003714; transcription corepressor activity
GO:0006338; chromatin remodeling
GO:0030702; chromatin silencing at centromere
GO:0000183; chromatin silencing at rDNA
GO:0016575; histone deacetylation
GO:0060303; regulation of nucleosome density" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL015C; date=19700101 ||| term=gene expression, transcriptionally regulates genes involved in transport; qualifier=represses; cv=gene_ex; db_xref=PMID:17446861; date=20080721 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "hst2" ; product "Sir2 family histone deacetylase Hst2" ;
chromosome3 GeneDB mRNA 1205004 1206506 . + . mRNA SPCC550.10 ; systematic_id "SPCC550.10" ; colour "2" ; gene "meu8 ||| SPCC550.10" ; Alias "meu8" ; db_xref "SPD:24/24D05" ; GO "GO:0007126; meiosis
GO:0016620; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824" ; primary_name "meu8" ; product "aldehyde dehydrogenase Meu8 (predicted)" ;
chromosome3 GeneDB mRNA 179113 180813 . + . mRNA SPCC1235.03 ; db_xref "SPD:19/19B12" ; systematic_id "SPCC1235.03" ; colour "10" ; GO "GO:0043130; ubiquitin binding
GO:0006281; DNA repair" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL090W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=CUE domain protein; qualifier=inferred from context; date=20081124" ; gene "SPCC1235.03" ; product "SMR domain protein, possibly involved in DNA repair" ;
chromosome3 GeneDB mRNA 2404996 2405823 . - . mRNA SPCP1E11.07c ; systematic_id "SPCP1E11.07c" ; colour "2" ; gene "cwf18 ||| SPCP1E11.07c" ; Alias "cwf18" ; db_xref "SPD:03/03E07" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0005681; spliceosome complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cwf18" ; product "complexed with Cdc5 protein Cwf18" ;
chromosome3 GeneDB mRNA 2295052 2296095 . - . mRNA SPCC965.07c ; systematic_id "SPCC965.07c" ; colour "2" ; gene "gst2 ||| SPCC965.07c" ; Alias "gst2" ; db_xref "SPD:08/08B03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL229C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=thioredoxin family; date=20081111" ; GO "GO:0034599; cellular response to oxidative stress
GO:0042493; response to drug
GO:0004364; glutathione transferase activity
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0042803; protein homodimerization activity
GO:0046982; protein heterodimerization activity" ; primary_name "gst2" ; product "glutathione S-transferase Gst2" ; EC_number "2.5.1.18" ;
chromosome3 GeneDB mRNA 2088527 2091991 . + . mRNA SPCC576.05 ; db_xref "SPD:48/48C08" ; systematic_id "SPCC576.05" ; colour "7" ; GO "GO:0005643; nuclear pore
GO:0006406; mRNA export from nucleus
GO:0006611; protein export from nucleus
GO:0042274; ribosome small subunit biogenesis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR159W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC576.05" ; product "nucear export factor Sac3 (predicted)" ;
chromosome3 GeneDB mRNA 1488861 1492436 . - . mRNA SPCC188.08c ; systematic_id "SPCC188.08c" ; colour "2" ; gene "ubp22 ||| SPCC188.08c ||| ubp5" ; Alias "ubp5" ; obsolete_name "ubp22" ; db_xref "SPD:41/41A06" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0030133; transport vesicle
GO:0005794; Golgi apparatus
GO:0005515; protein binding
GO:0006897; endocytosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR304W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human USP7 ortholog; date=20101001" ; primary_name "ubp5" ; product "ubiquitin C-terminal hydrolase Ubp5" ;
chromosome3 GeneDB mRNA 1287891 1290725 . + . mRNA SPCC1322.03 ; db_xref "SPD:38/38E06" ; systematic_id "SPCC1322.03" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0022857; transmembrane transporter activity
GO:0006810; transport
GO:0055085; transmembrane transport" ; colour "7" ; gene "SPCC1322.03" ; product "TRP-like ion channel (predicted)" ;
chromosome3 GeneDB mRNA 1846215 1846762 . - . mRNA SPCC1223.15c ; systematic_id "SPCC1223.15c" ; colour "2" ; gene "spc19 ||| SPCC1223.15c" ; Alias "spc19" ; db_xref "SPD:52/52E04" ; GO "GO:0042729; DASH complex
GO:0007052; mitotic spindle organization and biogenesis
GO:0031134; sister chromatid biorientation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR201W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "spc19" ; product "DASH complex subunit Spc19" ;
chromosome3 GeneDB mRNA 136807 137749 . + . mRNA SPCC330.13 ; systematic_id "SPCC330.13" ; colour "7" ; gene "rpc37 ||| SPCC330.13" ; Alias "rpc37" ; db_xref "SPD:08/08G03" ; GO "GO:0003899; DNA-directed RNA polymerase activity
GO:0006383; transcription from RNA polymerase III promoter
GO:0005666; DNA-directed RNA polymerase III complex" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKR025W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpc37" ; product "DNA-directed RNA polymerase III complex subunit Rpc37 (predicted)" ;
chromosome3 GeneDB mRNA 2095135 2096018 . - . mRNA SPCC576.08c ; systematic_id "SPCC576.08c" ; colour "7" ; gene "rps2 ||| SPCC576.08c" ; Alias "rps2" ; db_xref "SPD:09/09D06" ; GO "GO:0022627; cytosolic small ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL123W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, methylated; db_xref=PMID:15175657; date=20101021 ||| term=target of Rmt3; db_xref=PMID:15175657; date=20101021" ; primary_name "rps2" ; product "40S ribosomal protein S2 (predicted)" ;
chromosome3 GeneDB mRNA 1791346 1791909 . - . mRNA SPCC1442.13c ; db_xref "SPD:05/05H11" ; systematic_id "SPCC1442.13c" ; colour "10" ; GO "GO:0007126; meiosis
GO:0007126; meiosis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=G-patch domain; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=warning, gene structure updated; date=20020415 ||| term=warning, gene structure updated; date=20010312" ; gene "SPCC1442.13c" ; product "RNA-binding protein, G-patch type" ;
chromosome3 GeneDB mRNA 109866 110525 . - . mRNA SPCC330.03c ; db_xref "SPD:42/42E11" ; systematic_id "SPCC330.03c" ; colour "7" ; GO "GO:0020037; heme binding
GO:0042168; heme metabolism
GO:0003958; NADPH-hemoprotein reductase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YMR073C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; gene "SPCC330.03c" ; product "NADPH-hemoprotein reductase (predicted)" ;
chromosome3 GeneDB mRNA 1714660 1715798 . + . mRNA SPCC191.07 ; systematic_id "SPCC191.07" ; colour "7" ; gene "cyc1 ||| SPCC191.07" ; Alias "cyc1" ; db_xref "SPD:01/01H05" ; GO "GO:0045155; electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity
GO:0005746; mitochondrial electron transport chain
GO:0006123; mitochondrial electron transport, cytochrome c to oxygen
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL039C and YJR048W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cyc1" ; product "cytochrome c (predicted)" ;
chromosome3 GeneDB mRNA 2344770 2348565 . + . mRNA SPCC1494.10 ; systematic_id "SPCC1494.10" ; colour "7" ; gene "SPCC1494.10 ||| SPCC70.01 ||| adn3" ; Alias "adn3" ; db_xref "SPD:47/47D07" ; synonym "SPCC70.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to S. pombe SPBC1289.10c; date=19700101 ||| term=orthologous to S. cerevisiae YER109C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=name description, ADhesioN defective; db_xref=PMID:19542312; date=20090629 ||| term=phenotype, invasive growth, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706 ||| term=phenotype, adhesion defects, cell-substrate adhesion, abolished; qualifier=deletion; db_xref=PMID:19542312; cv=phenotype; date=20090706" ; GO "GO:0005634; nucleus
; DNA binding
GO:0003704; specific RNA polymerase II transcription factor activity
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0010552; positive regulation of specific transcription from RNA polymerase II promoter
GO:0000978; RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0010811; positive regulation of cell substrate adhesion" ; primary_name "adn3" ; product "transcription factor (predicted)" ;
chromosome3 GeneDB mRNA 1757425 1758361 . - . mRNA SPCC1450.13c ; db_xref "SPD:07/07B09" ; systematic_id "SPCC1450.13c" ; colour "2" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=subunit composition, homotrimer; cv=subunit_composition; db_xref=PMID:14690539; date=19700101 ||| term=orthologous to S. cerevisiae YBR256C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0009231; riboflavin biosynthesis
GO:0004746; riboflavin synthase activity" ; gene "SPCC1450.13c" ; product "riboflavin synthase" ; EC_number "2.5.1.9" ;
chromosome3 GeneDB mRNA 591775 594858 . + . mRNA SPCC1183.01 ; systematic_id "SPCC1183.01" ; colour "7" ; gene "sec15 ||| SPCC1672.13 ||| SPCC1183.01" ; Alias "sec15" ; db_xref "SPD:38/38E05" ; synonym "SPCC1672.13" ; GO "GO:0000145; exocyst
GO:0006904; vesicle docking during exocytosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL233W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec15" ; product "exocyst complex subunit Sec15 (predicted)" ;
chromosome3 GeneDB mRNA 649580 650846 . - . mRNA SPCC5E4.05c ; db_xref "SPD:43/43H02" ; systematic_id "SPCC5E4.05c" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0005811; lipid particle
GO:0005741; mitochondrial outer membrane
GO:0017171; serine hydrolase activity
GO:0006631; fatty acid metabolic process" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=abhydrolase family; date=19700101 ||| term=orthologous to S. cerevisiae YKL094W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC5E4.05c" ; product "mitochondrial serine hydrolase (predicted)" ;
chromosome3 GeneDB mRNA 894166 895427 . + . mRNA SPCC16A11.14 ; systematic_id "SPCC16A11.14" ; colour "2" ; gene "sfh1 ||| SPCC16A11.14" ; Alias "sfh1" ; db_xref "SPD:20/20B02" ; GO "GO:0016586; RSC complex
GO:0005634; nucleus
GO:0003677; DNA binding
GO:0005515; protein binding
GO:0043044; ATP-dependent chromatin remodeling
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0000790; nuclear chromatin" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=zinc finger protein; date=19700101 ||| term=zf-GATA type; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:14655046; date=19700101 ||| term=orthologous to S. cerevisiae YLR321C; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:18622392; date=20080717 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, cancer; date=20100218 ||| term=human SMARCB1 ortholog; date=20100218" ; primary_name "sfh1" ; product "RSC complex subunit Sfh1" ;
chromosome3 GeneDB mRNA 561636 563726 . - . mRNA SPCC1672.02c ; systematic_id "SPCC1672.02c" ; colour "2" ; db_xref "SPD:09/09E02" ; Alias "sap1" ; GO "GO:0000790; nuclear chromatin
GO:0008301; DNA bending activity
GO:0003677; DNA binding
GO:0003677; DNA binding
GO:0042803; protein homodimerization activity
GO:0043110; rDNA spacer replication fork barrier binding
GO:0043110; rDNA spacer replication fork barrier binding
GO:0051276; chromosome organization and biogenesis (sensu Eukaryota)
GO:0000728; gene conversion at mating-type locus, DNA double-strand break formation
GO:0031582; replication fork blocking at rDNA repeats
GO:0031582; replication fork blocking at rDNA repeats
GO:0071170; site-specifc DNA replication termination" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8114737; date=19700101 ||| term=species distribution, no apparent orthologs; date=19700101 ||| term=species distribution, sequence orphan; date=20090303 ||| term=species distribution, sequence orphan, characterised; date=20090303 ||| term=species distribution, identified in S. pombe only; date=20090303 ||| term=experimental tools, structure; cv=ex_tools; db_xref=PMID:10884352; date=20090427 ||| term=DNA binding specificity, binds 5'-TA[AG]GCAGNTN[CT]AACG[AC]G-3'; date=20100614 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:8114737; date=20101004" ; primary_name "sap1" ; product "switch-activating protein Sap1" ;
chromosome3 GeneDB mRNA 151093 152877 . - . mRNA SPCC320.08 ; db_xref "SPD:24/24F05" ; systematic_id "SPCC320.08" ; colour "7" ; GO "GO:0022857; transmembrane transporter activity
GO:0055085; transmembrane transport" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC320.08" ; product "membrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 1362628 1364868 . + . mRNA SPCC338.07c ; systematic_id "SPCC338.07c" ; colour "7" ; gene "SPCC338.07c" ; Alias "naa15" ; db_xref "SPD:28/28A07" ; GO "GO:0031415; NatA complex
GO:0017196; N-terminal peptidyl-methionine acetylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=TPR repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YDL040C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, N-Alpha- Acetyltransferase; date=20100622" ; primary_name "naa15" ; product "NatA N-acetyltransferase complex regulatory subunit Naa15 (predicted)" ;
chromosome3 GeneDB mRNA 1198190 1199791 . + . mRNA SPCC550.07 ; db_xref "SPD:25/25G01" ; systematic_id "SPCC550.07" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR242W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; colour "10" ; gene "SPCC550.07" ; product "acetamidase (predicted)" ;
chromosome3 GeneDB mRNA 2057084 2059331 . + . mRNA SPCC1739.13 ; systematic_id "SPCC1739.13" ; colour "7" ; gene "ssa2 ||| SPCC1739.13" ; Alias "ssa2" ; db_xref "SPD:26/26H10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, chaperone; cv=m_f_g; date=19700101 ||| term=orthologous to S. cerevisiae YAL005C and YBL075C and YER103W and YLL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0016887; ATPase activity
GO:0051082; unfolded protein binding
GO:0006457; protein folding
GO:0042026; protein refolding
GO:0034605; cellular response to heat
GO:0061077; chaperone-mediated protein folding" ; primary_name "ssa2" ; product "heat shock protein Ssa2 (predicted)" ; reserved_name "ssa2" ;
chromosome3 GeneDB mRNA 129844 131013 . + . mRNA SPCC330.10 ; systematic_id "SPCC330.10" ; colour "2" ; gene "pcm1 ||| SPCC330.10" ; Alias "pcm1" ; db_xref "SPD:43/43H08" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR236C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0016591; DNA-directed RNA polymerase II, holoenzyme
GO:0070693; P-TEFb-cap methyltransferase complex
GO:0005634; nucleus
GO:0004482; mRNA (guanine-N7-)-methyltransferase activity
GO:0001510; RNA methylation
GO:0006370; mRNA capping" ; primary_name "pcm1" ; product "P-TEFb-cap methyltransferase Pcm1" ; EC_number "2.1.1.56" ;
chromosome3 GeneDB mRNA 1355155 1355596 . - . mRNA SPCC338.12 ; systematic_id "SPCC338.12" ; colour "7" ; gene "SPCC338.12 ||| pbi2" ; Alias "pbi2" ; db_xref "SPD:01/01B03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL015W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820" ; GO "GO:0042144; vacuole fusion, non-autophagic
GO:0030162; regulation of proteolysis
GO:0004866; endopeptidase inhibitor activity
GO:0000324; fungal-type vacuole" ; primary_name "pbi2" ; product "proteinase B inhibitor Pbi2 (predicted)" ;
chromosome3 GeneDB mRNA 766170 767369 . - . mRNA SPCC1020.09 ; systematic_id "SPCC1020.09" ; colour "2" ; gene "SPCC1020.09 ||| gnr1" ; Alias "gnr1" ; db_xref "SPD:44/44A05" ; GO "GO:0005834; heterotrimeric G-protein complex
GO:0005515; protein binding
GO:0004871; signal transducer activity
GO:0007186; G-protein coupled receptor protein signaling pathway
GO:0090029; negative regulation of pheromone- dependent signal transduction during conjugation with cellular fusion" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12618370; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, G protein Negative Regulator; date=20090715 ||| term=human WDR79 ortholog; db_xref=PMID:16884933; date=20090715" ; primary_name "gnr1" ; product "heterotrimeric G protein beta subunit Gnr1" ;
chromosome3 GeneDB mRNA 1342946 1345475 . + . mRNA SPCC338.17c ; systematic_id "SPCC338.17c" ; colour "2" ; gene "rad21 ||| SPCC338.17c" ; Alias "rad21" ; db_xref "SPD:27/27B06" ; GO "GO:0000794; condensed nuclear chromosome
GO:0030892; mitotic cohesin complex
GO:0005515; protein binding
GO:0005515; protein binding
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0000724; double-strand break repair via homologous recombination
GO:0006302; double-strand break repair
GO:0007064; mitotic sister chromatid cohesion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL003W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, proteolytic cleavage; residue=179|231; db_xref=PMID:15329725; cv=pt_mod; date=20100125 ||| term=target of Cut1; date=20100128" ; primary_name "rad21" ; product "mitotic cohesin complex, non-SMC subunit Rad21 (kleisin)" ;
chromosome3 GeneDB mRNA 295272 296536 . - . mRNA SPCC553.06 ; systematic_id "SPCC553.06" ; colour "7" ; gene "SPCC553.06" ; db_xref "SPD:14/14H01" ; Alias "swp1" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation
GO:0004579; dolichyl-diphosphooligosaccharide- protei nglycotransferase activity" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YMR149W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human RPN2 ortholog; date=20100923" ; primary_name "swp1" ; product "oligosaccharyltransferase delta subunit Swp1 (predicted)" ;
chromosome3 GeneDB mRNA 401970 404833 . + . mRNA SPCC1682.15 ; systematic_id "SPCC1682.15" ; colour "10" ; gene "SPCC1682.15 ||| mug122" ; Alias "mug122" ; db_xref "SPD:28/28B01" ; GO "GO:0035091; phosphoinositide binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=PX domain protein; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20071106 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "mug122" ; product "PX/PXA domain protein" ;
chromosome3 GeneDB mRNA 998942 1000316 . - . mRNA SPCC895.03c ; db_xref "SPD:19/19E08" ; systematic_id "SPCC895.03c" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL169W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; colour "7" ; GO "GO:0005737; cytoplasm
GO:0006400; tRNA modification" ; gene "SPCC895.03c" ; product "SUA5/yciO/yrdC family protein Sua5 (predicted)" ;
chromosome3 GeneDB mRNA 1011480 1014287 . + . mRNA SPCC895.07 ; systematic_id "SPCC895.07" ; colour "2" ; gene "alp14 ||| mtc1 ||| SPCC895.07" ; Alias "alp14" ; db_xref "SPD:28/28G03" ; synonym "mtc1" ; GO "GO:0005816; spindle pole body
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0000778; condensed chromosome kinetochore
GO:0007094; mitotic spindle checkpoint
GO:0007163; establishment and/or maintenance of cell polarity
GO:0008017; microtubule binding
GO:0007017; microtubule-based process
GO:0031122; cytoplasmic microtubule organization and biogenesis
GO:0090307; spindle assembly involved in mitosis
GO:0005515; protein binding
GO:0070850; TACC/TOG complex
GO:0005634; nucleus
GO:0000226; microtubule cytoskeleton organization
GO:0000070; mitotic sister chromatid segregation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=MAP215/Dis1 family; date=19700101 ||| term=HEAT repeat; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=localization, undergoes nucleocytoplasmic shuttling; db_xref=PMID:19606211; cv=localization; date=20090817 ||| term=phenotype, sensitive to high temperature; cv=phenotype; db_xref=PMID:19696784; date=20091127 ||| term=phenotype, chromosome segregation defects; db_xref=PMID:19696784; date=20091127 ||| term=localization, undergoes nucleocytoplasmic shuttling; qualifier=during_mitosis; db_xref=PMID:19696784; cv=localization; date=20090817 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; primary_name "alp14" ; product "TOG ortholog Alp14" ;
chromosome3 GeneDB mRNA 1980617 1981891 . - . mRNA SPCC18.14c ; systematic_id "SPCC18.14c" ; colour "7" ; gene "rpp0 ||| SPCC18.14c" ; db_xref "SPD:20/20B11" ; Alias "rpp0" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR340W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "rpp0" ; product "60S acidic ribosomal protein Rpp0 (predicted)" ;
chromosome3 GeneDB mRNA 1538085 1540542 . + . mRNA SPCC584.05 ; systematic_id "SPCC584.05" ; colour "7" ; gene "sec1 ||| SPCC584.05" ; Alias "sec1" ; db_xref "SPD:28/28D05" ; GO "GO:0000149; SNARE binding
GO:0006904; vesicle docking during exocytosis
GO:0006906; vesicle fusion" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR164C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "sec1" ; product "SNARE binding protein Sec1 (predicted)" ;
chromosome3 GeneDB mRNA 215355 217060 . + . mRNA SPCC1235.15 ; systematic_id "SPCC1235.15" ; colour "2" ; gene "dga1 ||| SPCC1235.15 ||| SPCC548.01" ; note "non consensus intron fixed 19. Nov. 2003 pers. comm. Jan Dungan" ; Alias "dga1" ; db_xref "SPD:24/24A01" ; synonym "SPCC548.01" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR245C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004144; diacylglycerol O-acyltransferase activity
GO:0019432; triacylglycerol biosynthesis
GO:0046339; diacylglycerol metabolism
GO:0019915; sequestering of lipid" ; primary_name "dga1" ; product "diacylglycerol O-acyltransferase Dga1" ; EC_number "2.3.1.20" ;
chromosome3 GeneDB mRNA 2010426 2010789 . + . mRNA SPCC4F11.05 ; db_xref "SPD:01/01D01" ; systematic_id "SPCC4F11.05" ; controlled_curation "term=warning, below 100 amino acid size threshold; cv=warning; date=19700101" ; colour "6" ; gene "SPCC4F11.05" ; product "dubious" ;
chromosome3 GeneDB mRNA 1807004 1808534 . - . mRNA SPCC285.07c ; systematic_id "SPCC285.07c" ; colour "12" ; gene "wtf18 ||| SPCC285.07c" ; obsolete_name "wtf5" ; Alias "wtf18" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf18" ; product "wtf element Wtf18" ;
chromosome3 GeneDB mRNA 78044 79612 . + . mRNA SPCC757.13 ; db_xref "SPD:25/25C11" ; systematic_id "SPCC757.13" ; colour "7" ; GO "GO:0055085; transmembrane transport
GO:0071916; dipeptide transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR152W and YLR004C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC757.13" ; product "dipeptide transmemembrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 1357796 1358622 . + . mRNA SPCC338.10c ; systematic_id "SPCC338.10c" ; colour "7" ; gene "cox5 ||| SPCC338.10c" ; Alias "cox5" ; db_xref "SPD:05/05C06" ; GO "GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0004129; cytochrome-c oxidase activity
GO:0006123; mitochondrial electron transport, cytochrome c to oxygen" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL111W and YNL052W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cox5" ; product "cytochrome c oxidase subunit V (predicted)" ;
chromosome3 GeneDB mRNA 1622512 1624327 . + . mRNA SPCC777.14 ; systematic_id "SPCC777.14" ; colour "2" ; gene "prp4 ||| SPCC777.14" ; Alias "prp4" ; db_xref "SPD:25/25A06" ; GO "GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:8371982; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:9102632; date=20100712 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606" ; primary_name "prp4" ; product "serine/threonine protein kinase Prp4" ;
chromosome3 GeneDB mRNA 988847 989422 . + . mRNA SPCC1795.05c ; db_xref "SPD:06/06B11" ; systematic_id "SPCC1795.05c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=disease associated, hemolytic anemia; date=20060920 ||| term=orthologous to S. cerevisiae YKL024C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0009041; uridylate kinase activity
GO:0006207; 'de novo' pyrimidine base biosynthesis
GO:0005737; cytoplasm
GO:0005634; nucleus" ; gene "SPCC1795.05c" ; product "uridylate kinase (predicted)" ; EC_number "2.7.4.-" ;
chromosome3 GeneDB mRNA 2311551 2314300 . + . mRNA SPCC965.13 ; db_xref "SPD:25/25H05" ; systematic_id "SPCC965.13" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0005887; integral to plasma membrane
GO:0031923; pyridoxine transport
GO:0031928; pyridoxine transporter activity
GO:0031920; pyridoxal transport
GO:0031925; pyridoxal transporter activity
GO:0031922; pyridoxamine transport
GO:0031927; pyridoxamine transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPAC17A2.01 and SPCC576.17c; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC965.13" ; product "pyradoxal family membrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 1016871 1021291 . - . mRNA SPCC895.09c ; systematic_id "SPCC895.09c" ; colour "10" ; gene "ucp12 ||| SPCC895.09c" ; Alias "ucp12" ; db_xref "SPD:30/30G02" ; GO "GO:0043130; ubiquitin binding
GO:0004004; ATP-dependent RNA helicase
GO:0005524; ATP binding" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=RWD domain; date=19700101 ||| term=UBA domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YLR419W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human DHX57 ortholog; date=20100728" ; primary_name "ucp12" ; product "ATP-dependent RNA helicase Ucp12 (predicted)" ;
chromosome3 GeneDB mRNA 2142317 2143550 . - . mRNA SPCC126.15c ; systematic_id "SPCC126.15c" ; colour "7" ; gene "sec65 ||| SPCC126.15c" ; Alias "sec65" ; db_xref "SPD:42/42G01" ; GO "GO:0005786; signal recognition particle (sensu Eukaryota)
GO:0006617; SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML105C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "sec65" ; product "signal recognition particle subunit Sec65 (predicted)" ;
chromosome3 GeneDB mRNA 2201442 2202763 . + . mRNA SPCC830.10 ; db_xref "SPD:14/14E12" ; systematic_id "SPCC830.10" ; colour "7" ; GO "GO:0006974; response to DNA damage stimulus
GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0047429; nucleoside-triphosphate pyrophosphatase activity
GO:0009204; deoxyribonucleoside triphosphate catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJR069C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC830.10" ; product "nucleoside triphosphatase (predicted)" ;
chromosome3 GeneDB mRNA 232834 234507 . - . mRNA SPCC548.07c ; systematic_id "SPCC548.07c" ; colour "2" ; gene "ght1 ||| SPCC548.07c" ; Alias "ght1" ; db_xref "SPD:35/35A08" ; GO "GO:0005887; integral to plasma membrane
GO:0015149; hexose transporter activity
GO:0035428; hexose transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; primary_name "ght1" ; product "hexose transporter Ght1" ;
chromosome3 GeneDB mRNA 412476 415886 . - . mRNA SPCC306.04c ; systematic_id "SPCC306.04c" ; colour "2" ; gene "set1 ||| SPCC306.04c" ; Alias "set1" ; db_xref "SPD:39/39B01" ; synonym "kmt2" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=SET domain; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12589755; date=19700101 ||| term=orthologous to S. cerevisiae YHR119W; date=19700101 ||| term=rrm RNA recognition motif; date=19700101 ||| term=misc, Set1 mediated H3 K4 methylation is preferentially enriched at euchromatic loci; db_xref=PMID:12193658; cv=misc; date=20070704 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0048188; COMPASS complex
GO:0003723; RNA binding
GO:0042800; histone lysine N-methyltransferase activity (H3-K4 specific)
GO:0018024; histone-lysine N-methyltransferase activity
GO:0000077; DNA damage checkpoint
GO:0006338; chromatin remodeling
GO:0006342; chromatin silencing
GO:0016571; histone methylation
GO:0000723; telomere maintenance
GO:0000790; nuclear chromatin" ; primary_name "set1" ; product "histone lysine methyltransferase Set1" ;
chromosome3 GeneDB mRNA 367487 368995 . - . mRNA SPCC594.07c ; systematic_id "SPCC594.07c" ; colour "2" ; gene "SPCC594.07c" ; Alias "bqt3" ; db_xref "SPD:10/10E06" ; GO "GO:0005515; protein binding
GO:0045141; meiotic telomere clustering
GO:0005635; nuclear envelope" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, sequence orphan, characterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=misc, degradation required to stabilize Bqt4 in the nuclear membrane; db_xref=PMID:19948484; date=20091127" ; primary_name "bqt3" ; product "bouquet formation protein Bqt3" ;
chromosome3 GeneDB mRNA 1177837 1178825 . - . mRNA SPCC4B3.01 ; systematic_id "SPCC4B3.01" ; colour "7" ; gene "SPCC4B3.01 ||| SPCP25A2.01c" ; Alias "tum1" ; db_xref "SPD:13/13E02" ; synonym "SPCP25A2.01c" ; controlled_curation "term=orthologous to S. cerevisiae YOR251C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=human TST and MTST ortholog; date=20100728" ; GO "GO:0004792; thiosulfate sulfurtransferase activity
GO:0005737; cytoplasm
GO:0002143; wobble position uridine thiolation" ; primary_name "tum1" ; product "thiosulfate sulfurtransferase, involved in tRNA wobble position thiolation Tum1 (predicted)" ;
chromosome3 GeneDB mRNA 1860467 1861935 . - . mRNA SPCC1223.10c ; systematic_id "SPCC1223.10c" ; colour "2" ; gene "eaf1 ||| SPCC1223.10c" ; Alias "eaf1" ; db_xref "EMBL:EF192607 ||| SPD:16/16H03" ; GO "GO:0032783; ELL-EFF RNA elongation complex
GO:0016944; RNA polymerase II transcription elongation factor activity
GO:0005515; protein binding
GO:0006368; RNA elongation from RNA polymerase II promoter
GO:0032968; positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045944; positive regulation of transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:17150956; date=20061212 ||| term=species distribution, no apparent S. cerevisiae ortholog; db_xref=PMID:17150956; date=20061212 ||| term=name description, ELL Associated Factor; cv=name_description; date=20061213 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene structure updated; cv=warning; db_xref=PMID:17150956; date=20090903" ; primary_name "eaf1" ; product "RNA polymerase II transcription elongation factor SpEAF" ;
chromosome3 GeneDB mRNA 1309616 1310947 . + . mRNA SPCC1322.10 ; systematic_id "SPCC1322.10" ; colour "10" ; gene "SPCC1322.10" ; db_xref "SPD:09/09H11" ; synonym "pwp1" ; GO "GO:0009986; cell surface
GO:0009277; fungal-type cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=similar to N. crassa ncu05667.1; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=name description, Pombe Wall Protein; db_xref=PMID:17230583; date=20090615 ||| term=modification, GPI attachment site; cv=pt_mod; evidence=IDA; db_xref=PMID:17230583; date=20100104" ; product "cell wall protein Pwp1" ;
chromosome3 GeneDB mRNA 1511522 1513282 . - . mRNA SPCC584.11c ; db_xref "SPD:25/25H03" ; systematic_id "SPCC584.11c" ; colour "10" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR346C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC584.11c" ; product "Svf1 family protein Svf1" ;
chromosome3 GeneDB mRNA 773389 774764 . + . mRNA SPCC1020.06c ; systematic_id "SPCC1020.06c" ; colour "7" ; gene "tal1 ||| SPCC1020.06c" ; Alias "tal1" ; db_xref "KEGG:MAP00030; ||| SPD:13/13G10" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YLR354C and YGR043C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; GO "GO:0009052; pentose-phosphate shunt, non-oxidative branch
GO:0004801; transaldolase activity
GO:0005737; cytoplasm" ; primary_name "tal1" ; product "transaldolase (predicted)" ; EC_number "2.2.1.2" ;
chromosome3 GeneDB mRNA 887180 888438 . - . mRNA SPCC16A11.10c ; systematic_id "SPCC16A11.10c" ; colour "2" ; gene "oca8 ||| SPCC16A11.10c" ; Alias "oca8" ; db_xref "SPD:14/14B11" ; GO "GO:0009055; electron carrier activity
GO:0006696; ergosterol biosynthetic process
GO:0005789; endoplasmic reticulum membrane" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL111C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "oca8" ; product "cytochrome b5 (predicted)" ;
chromosome3 GeneDB mRNA 432331 434750 . - . mRNA SPCC4G3.19 ; systematic_id "SPCC4G3.19" ; colour "2" ; gene "alp16 ||| SPCC4G3.19" ; Alias "alp16" ; db_xref "SPD:28/28B12" ; GO "GO:0000930; gamma-tubulin complex
GO:0005816; spindle pole body
GO:0000226; microtubule cytoskeleton organization and biogenesis
GO:0000923; equatorial microtubule organizing center
GO:0051415; interphase microtubule nucleation by interphase microtubule organizing center" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; qualifier=deletion; cv=phenotype; date=19700101 ||| term=phenotype, cytoskeletal defects, long cytoplasmic microtubules; db_xref=PMID:12134075; qualifier=deletion; cv=phenotype; date=19700101 ||| term=human hGPC6 ortholog; db_xref=PMID:12134075; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=phenotype, viable; cv=phenotype; date=20070725 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "alp16" ; product "gamma tubulin complex subunit Alp16" ;
chromosome3 GeneDB mRNA 877887 878655 . - . mRNA SPCC16A11.05c ; systematic_id "SPCC16A11.05c" ; colour "2" ; gene "dim1 ||| SPCC16A11.05c" ; Alias "dim1" ; db_xref "SPD:08/08B08" ; GO "GO:0046540; U4/U6 x U5 tri-snRNP complex
GO:0000398; nuclear mRNA splicing, via spliceosome
GO:0030071; regulation of mitotic metaphase/anaphase transition
GO:0071780; mitotic cell cycle G2/M transition checkpoint" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:9182666; date=19700101 ||| term=thioredoxin family; date=20070522 ||| term=orthologous to S. cerevisiae YPR082C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=warning, gene name conflict; date=20100126 ||| term=phenotype, cut; allele=dim1-35; db_xref=PMID:9182666; date=20100726 ||| term=phenotype, cell morphology, elongated cells; qualifier=deletion; db_xref=PMID:9182666; date=20100726" ; primary_name "dim1" ; product "U4/U6 x U5 tri-snRNP complex subunit Dim1" ;
chromosome3 GeneDB mRNA 221199 222701 . - . mRNA SPCC548.03c ; systematic_id "SPCC548.03c" ; colour "12" ; gene "wtf4 ||| SPCC548.03c" ; Alias "wtf4" ; obsolete_name "wtf13" ; db_xref "SPD:51/51D11" ; synonym "SPCC548.03" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf4" ; product "wtf element Wtf4" ;
chromosome3 GeneDB mRNA 717851 718869 . - . mRNA SPCC18B5.02c ; systematic_id "SPCC18B5.02c" ; pseudo "_no_value" ; colour "13" ; controlled_curation "term=gene expression, transcriptionally induced by stress; cv=gene_ex; date=19700101 ||| term=warning, frameshifted; cv=warning; date=20091230" ; gene "SPCC18B5.02c" ; product "cinnamoyl-CoA reductase pseudogene" ; note "Three independent preps were newly prepared from the original clone and all three were the same as previously reported sequence" ;
chromosome3 GeneDB mRNA 2358577 2362482 . - . mRNA SPCC70.05c ; db_xref "SPD:28/28D09" ; systematic_id "SPCC70.05c" ; colour "7" ; GO "GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0004674; protein serine/threonine kinase activity
GO:0007165; signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=similar to S. pombe SPBC21.07C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC70.05c" ; product "serine/threonine protein kinase (predicted)" ;
chromosome3 GeneDB mRNA 2409922 2411871 . + . mRNA SPCP1E11.11 ; systematic_id "SPCP1E11.11" ; colour "7" ; gene "SPCP1E11.11" ; Alias "puf6" ; db_xref "SPD:26/26H03" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pumilio family; date=19700101 ||| term=orthologous to S. cerevisiae YDR496C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005730; nucleolus
GO:0042273; ribosomal large subunit biogenesis
GO:0017148; negative regulation of translation
GO:0000900; translation repressor activity, mRNA binding
GO:0003730; mRNA binding 3'-UTR binding" ; primary_name "puf6" ; product "Puf family RNA-binding protein Puf6 (predicted)" ; reserved_name "puf6" ;
chromosome3 GeneDB mRNA 767887 770085 . - . mRNA SPCC1020.08 ; db_xref "SPD:27/27F11" ; systematic_id "SPCC1020.08" ; colour "7" ; GO "GO:0031591; wybutosine biosynthesis
GO:0006400; tRNA modification" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YPL207W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Archaea; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1020.08" ; product "wybutosine biosynthesis protein Tyw1 (predicted)" ;
chromosome3 GeneDB mRNA 1404986 1405536 . + . mRNA SPCC622.02 ; db_xref "SPD:02/02H01" ; systematic_id "SPCC622.02" ; controlled_curation "term=warning, ORF in compositionally biased region; cv=warning; date=19700101" ; colour "6" ; gene "SPCC622.02" ; product "dubious" ;
chromosome3 GeneDB mRNA 1773925 1775522 . - . mRNA SPCC1442.04c ; systematic_id "SPCC1442.04c" ; colour "7" ; gene "SPCC1442.04c" ; note "WARNING there are 4 bases missing from this sequence AACATCTTCCAAGTTCTCAT GATC CTTTAAAGATTCCTCAAGGT, which will change the C-terminal region slightly. This will be fixed in the next round of corrections" ; db_xref "SPD:19/19F02" ; GO "GO:0005737; cytoplasm
GO:0005634; nucleus
GO:0006311; meiotic gene conversion
GO:0007131; reciprocal meiotic recombination" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL250W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=warning, sequence error in genomic data; db_xref=PMID:16823372; cv=warning; date=20090202 ||| term=warning, frameshifted; cv=warning; db_xref=PMID:16823372; date=20090202 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "meiotic recombination protein (predicted)" ;
chromosome3 GeneDB mRNA 427445 428763 . + . mRNA SPCC306.10 ; systematic_id "SPCC306.10" ; colour "12" ; obsolete_name "wtf3-pseudo" ; db_xref "SPD:51/51D12" ; Alias "wtf8" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223 ||| term=warning, gene structure updated; cv=warning; date=20100227 ||| term=warning, non-consensus branch site; cv=warning; date=20100227" ; primary_name "wtf8" ; product "wtf element Wtf8" ;
chromosome3 GeneDB mRNA 278906 279209 . + . mRNA SPCC794.15 ; db_xref "SPD:01/01E03" ; systematic_id "SPCC794.15" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "6" ; gene "SPCC794.15" ; product "dubious" ;
chromosome3 GeneDB mRNA 1332716 1336125 . - . mRNA SPCC132.04c ; systematic_id "SPCC132.04c" ; colour "7" ; gene "SPCC132.04c" ; note "S. cerevisiae ortholog YDL215C is not normally involved in glutamate biosynthesis (PMID:1975578) i.e reaction direction is toward 2-oxoglutarate in vitro" ; Alias "gdh2" ; db_xref "KEGG:MAP00251; ||| KEGG:MAP00910; ||| SPD:30/30D03" ; GO "GO:0006536; glutamate metabolism
GO:0004352; glutamate dehydrogenase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDL215C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gdh2" ; product "NAD-dependent glutamate dehydrogenase Gdh2 (predicted)" ; EC_number "1.4.1.2" ;
chromosome3 GeneDB mRNA 1442991 1443925 . + . mRNA SPCC61.02 ; systematic_id "SPCC61.02" ; colour "2" ; gene "spt3 ||| SPCC61.02" ; Alias "spt3" ; db_xref "SPD:12/12H05" ; GO "GO:0003712; transcription cofactor activity
GO:0016573; histone acetylation
GO:0032569; specific transcription from RNA polymerase II promoter
GO:0006338; chromatin remodeling" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=histone fold; date=19700101 ||| term=orthologous to S. cerevisiae YDR392W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "spt3" ; product "SAGA complex subunit Spt3" ;
chromosome3 GeneDB mRNA 1593402 1593818 . - . mRNA SPCC13B11.02c ; db_xref "SPD:51/51H07" ; systematic_id "SPCC13B11.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=warning, previously annotated as dubious; cv=warning; date=20100606" ; colour "8" ; gene "SPCC13B11.02c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2017717 2019288 . + . mRNA SPCC1906.03 ; systematic_id "SPCC1906.03" ; colour "12" ; gene "SPCC1906.03 ||| wtf19" ; db_xref "SPD:45/45B08" ; Alias "wtf19" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=wtf element; db_xref=PMID:12952871; date=20070223" ; primary_name "wtf19" ; product "wtf element Wtf19" ;
chromosome3 GeneDB mRNA 691105 691657 . - . mRNA SPCC16C4.13c ; systematic_id "SPCC16C4.13c" ; colour "2" ; gene "rpl1201 ||| rpl12-1 ||| rpl12.1 ||| SPCC16C4.13c" ; Alias "rpl1201" ; db_xref "SPD:04/04G12" ; synonym "rpl12-1 ||| rpl12.1" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0000027; ribosomal large subunit assembly and maintenance" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL054C and YDR418W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=target of Set11; db_xref=PMID:18195021; date=20100629 ||| term=modification, methylated; cv=pt_mod; db_xref=PMID:18195021; date=20100629" ; primary_name "rpl1201" ; product "60S ribosomal protein L12.1/L12A" ;
chromosome3 GeneDB mRNA 273015 274757 . - . mRNA SPCC794.11c ; db_xref "SPD:22/22A05" ; systematic_id "SPCC794.11c" ; colour "7" ; GO "GO:0030479; actin cortical patch
GO:0030125; clathrin vesicle coat
GO:0005546; phosphatidylinositol-4,5-bisphosphate binding
GO:0006895; Golgi to endosome transport
GO:0000147; actin cortical patch assembly
GO:0007015; actin filament organization
GO:0006897; endocytosis" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=ENTH/VHS domain protein; date=19700101 ||| term=orthologous to S. cerevisiae YJR125C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC794.11c" ; product "ENTH/VHS domain protein Ent3 (predicted)" ;
chromosome3 GeneDB mRNA 1145056 1145990 . - . mRNA SPCC4B3.17 ; systematic_id "SPCC4B3.17" ; colour "7" ; gene "cbp3 ||| SPCC4B3.17" ; Alias "cbp3" ; db_xref "SPD:11/11C02" ; GO "GO:0005743; mitochondrial inner membrane
GO:0033108; mitochondrial respiratory chain complex assembly" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL215W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "cbp3" ; product "ubiquinol cytochrome-c reductase assembly protein Cbp3 (predicted)" ;
chromosome3 GeneDB mRNA 2149379 2150908 . - . mRNA SPCC1620.04c ; systematic_id "SPCC1620.04c" ; colour "10" ; gene "SPCC1620.04c ||| mug55" ; db_xref "SPD:44/44H04" ; Alias "mug55" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=Cdc20/Fizzy subfamily; date=19700101 ||| term=WD repeat protein; date=19700101 ||| term=similar to S. pombe SPAC13G6.08; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug55" ; product "Cdc20/Fizzy subfamily WD repeat protein" ;
chromosome3 GeneDB mRNA 2159421 2161236 . + . mRNA SPCC1620.08 ; db_xref "KEGG:MAP00020; ||| SPD:44/44C01" ; systematic_id "SPCC1620.08" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR244C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0006104; succinyl-CoA metabolism
GO:0006099; tricarboxylic acid cycle
GO:0005739; mitochondrion
GO:0004774; succinate-CoA ligase activity
GO:0042709; succinate-CoA ligase complex" ; gene "SPCC1620.08" ; product "succinate-CoA ligase beta subunit (predicted)" ; EC_number "6.2.1.-" ;
chromosome3 GeneDB mRNA 1960130 1962906 . + . mRNA SPCC18.04 ; systematic_id "SPCC18.04" ; colour "2" ; gene "pof6 ||| SPCC18.04" ; Alias "pof6" ; db_xref "SPD:38/38H05" ; GO "GO:0000935; barrier septum
GO:0051286; cell tip
GO:0005730; nucleolus
GO:0005634; nucleus
GO:0000151; ubiquitin ligase complex
GO:0030674; protein binding, bridging
GO:0005515; protein binding
GO:0033205; cell cycle cytokinesis
GO:0006897; endocytosis
GO:0005515; protein binding
GO:0005515; protein binding" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=F-box protein; date=19700101 ||| term=phenotype, inviable; cv=phenotype; db_xref=PMID:12511573; date=19700101 ||| term=orthologous to S. cerevisiae YJL204C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20519959; cv=phenotype; date=20100605" ; primary_name "pof6" ; product "F-box protein Pof6" ;
chromosome3 GeneDB mRNA 1840586 1843228 . - . mRNA SPCC1223.03c ; systematic_id "SPCC1223.03c" ; colour "7" ; db_xref "SPD:26/26H12" ; Alias "gut2" ; GO "GO:0009331; glycerol-3-phosphate dehydrogenase complex
GO:0005739; mitochondrion
GO:0004368; glycerol-3-phosphate dehydrogenase activity
GO:0005975; carbohydrate metabolism
GO:0006072; glycerol-3-phosphate metabolism
GO:0006116; NADH oxidation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YIL155C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "gut2" ; product "glycerol-3-phosphate dehydrogenase Gut2 (predicted)" ; EC_number "1.1.5.3" ;
chromosome3 GeneDB mRNA 896090 896915 . - . mRNA SPCC16A11.15c ; db_xref "SPD:02/02D01" ; systematic_id "SPCC16A11.15c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC16A11.15c" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 2111240 2113660 . - . mRNA SPCC576.17c ; db_xref "SPD:45/45G08" ; systematic_id "SPCC576.17c" ; colour "7" ; GO "GO:0005886; plasma membrane
GO:0005887; integral to plasma membrane
GO:0031923; pyridoxine transport
GO:0031928; pyridoxine transporter activity
GO:0031920; pyridoxal transport
GO:0031925; pyridoxal transporter activity
GO:0031922; pyridoxamine transport
GO:0031927; pyridoxamine transmembrane transporter activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=similar to S. pombe SPAC17A2.01 and SPCC965.13; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC576.17c" ; product "pyridoxamine/pyridoxine/pyridoxal transmembrane transporter (predicted)" ;
chromosome3 GeneDB mRNA 687754 688671 . + . mRNA SPCC16C4.11 ; systematic_id "SPCC16C4.11" ; colour "2" ; gene "pef1 ||| SPCC16C4.11" ; Alias "pef1" ; db_xref "SPD:12/12G05" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=orthologous to S. cerevisiae YPL031C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=CDK family kinase; date=20090122 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; GO "GO:0004693; cyclin-dependent protein kinase activity
GO:0005515; protein binding
GO:0000083; positive regulation of transcription involved in G1/S-phase of mitotic cell cycle
GO:0007165; signal transduction
GO:0007089; traversing start control point of mitotic cell cycle" ; primary_name "pef1" ; product "Pho85/PhoA-like cyclin-dependent kinase Pef1" ; EC_number "2.7.1.-" ;
chromosome3 GeneDB mRNA 64216 66968 . - . mRNA SPCC757.09c ; systematic_id "SPCC757.09c" ; colour "2" ; gene "rnc1 ||| SPCC757.09c" ; Alias "rnc1" ; db_xref "SPD:19/19B07" ; GO "GO:0006469; negative regulation of protein kinase activity
GO:0043409; negative regulation of MAPKKK cascade
GO:0003729; mRNA binding
GO:0048255; mRNA stabilization
; protein binding" ; controlled_curation "term=phenotype, sensitive to CPT; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=KH domain; date=19700101 ||| term=orthologous to S. cerevisiae YBR233W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:12931193; date=20100826 ||| term=target of Pmk1; qualifier=phosphorylated_by; db_xref=PMID:12931193; date=20100826" ; primary_name "rnc1" ; product "RNA-binding protein that suppresses calcineurin deletion Rnc1" ;
chromosome3 GeneDB mRNA 590128 591720 . - . mRNA SPCC1672.12c ; systematic_id "SPCC1672.12c" ; colour "7" ; gene "SPCC1672.12c ||| get4" ; Alias "get4" ; db_xref "SPD:20/20F01" ; GO "GO:0045048; protein insertion into ER membrane
GO:0005737; cytoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YOR164C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human c7orf20 ortholog; date=20091006" ; primary_name "get4" ; product "ER membrane insertion protein Get4 (predicted)" ;
chromosome3 GeneDB mRNA 915175 916695 . - . mRNA SPCC24B10.08c ; systematic_id "SPCC24B10.08c" ; colour "2" ; gene "ada2 ||| SPCC24B10.08c" ; Alias "ada2" ; db_xref "SPD:22/22H07" ; GO "GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0003713; transcription coactivator activity
GO:0006338; chromatin remodeling
GO:0016573; histone acetylation
GO:0006366; transcription from RNA polymerase II promoter
GO:0044154; histone H3-K14 acetylation
GO:0043971; histone H3-K18 acetylation
GO:0043972; histone H3-K23 acetylation
GO:0043970; histone H3-K9 acetylation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR448W; date=19700101 ||| term=Myb family; date=19700101 ||| term=zinc finger protein; date=19700101 ||| term=zf-ZZ type; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:19056896; date=20090112" ; primary_name "ada2" ; product "SAGA complex subunit Ada2" ;
chromosome3 GeneDB mRNA 2434691 2435662 . + . mRNA SPCC569.01c ; db_xref "SPD:41/41H05" ; systematic_id "SPCC569.01c" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20081212 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0010339; external side of cell wall" ; gene "SPCC569.01c" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 5" ;
chromosome3 GeneDB mRNA 2430297 2431524 . - . mRNA SPCC569.03 ; db_xref "SPD:19/19A04" ; systematic_id "SPCC569.03" ; colour "10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20081212 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; GO "GO:0070263; external side of fungal-type cell wall" ; gene "SPCC569.03" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 4" ;
chromosome3 GeneDB mRNA 435907 438550 . - . mRNA SPCC4G3.18 ; db_xref "SPD:28/28H12" ; systematic_id "SPCC4G3.18" ; colour "7" ; GO "GO:0005634; nucleus
GO:0006364; rRNA processing
GO:0000027; ribosomal large subunit assembly and maintenance
GO:0000054; ribosome export from nucleus" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YHR197W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC4G3.18" ; product "ribosome biogenesis protein Rix1 (predicted)" ;
chromosome3 GeneDB mRNA 656625 657071 . + . mRNA SPCC5E4.07 ; systematic_id "SPCC5E4.07" ; colour "2" ; gene "rpl2802 ||| rpl28-2 ||| rpl28 ||| SPCC5E4.07" ; Alias "rpl2802" ; db_xref "SPD:03/03H06" ; synonym "rpl28-2 ||| rpl28" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL103W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl2802" ; product "60S ribosomal protein L27/L28" ;
chromosome3 GeneDB mRNA 1533022 1534677 . - . mRNA SPCC584.03c ; db_xref "SPD:34/34G05" ; systematic_id "SPCC584.03c" ; colour "7" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0007264; small GTPase mediated signal transduction
GO:0005525; GTP binding
GO:0030695; GTPase regulator activity" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL164C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC584.03c" ; product "Ran GTP-binding protein (predicted)" ;
chromosome3 GeneDB mRNA 1736606 1737652 . - . mRNA SPCC1450.07c ; db_xref "SPD:16/16A01" ; systematic_id "SPCC1450.07c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC1450.07c" ; product "D-amino acid oxidase (predicted)" ; EC_number "1.4.3.3" ;
chromosome3 GeneDB mRNA 1632825 1634461 . + . mRNA SPCC663.17 ; Alias "wtf15" ; systematic_id "SPCC663.17" ; pseudo "_no_value" ; colour "13" ; controlled_curation "term=wtf element; db_xref=PMID:12952871; date=20070223" ; gene "wtf15 ||| SPCC663.17" ; primary_name "wtf15" ; product "pseudogene wtf element Wtf15" ;
chromosome3 GeneDB mRNA 204733 206717 . + . mRNA SPCC1235.13 ; systematic_id "SPCC1235.13" ; colour "2" ; db_xref "SPD:25/25G09" ; Alias "ght6" ; synonym "meu12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, tandem duplication; cv=genome_org; date=19700101 ||| term=orthologous to S. cerevisiae YHR094C and YMR011W and YHR092C and YHR096C and YDR343C and YDR342C and YJL214W and YJL219W and YOL156W and YEL069C and YNL318C and YDL245C and YJR158W and YNR072W and YLR081W and YDR536W and YGR289C; date=19700101 ||| term=name description, Meiotic Expression Upregulated; cv=name_description; db_xref=PMID:11376151; date=19700101 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:11376151; date=20100103 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; GO "GO:0005886; plasma membrane" ; primary_name "ght6" ; product "hexose transporter Ght6" ;
chromosome3 GeneDB mRNA 2223154 2224470 . + . mRNA SPCC1919.09 ; systematic_id "SPCC1919.09" ; colour "2" ; gene "tif6 ||| SPCC1919.09" ; db_xref "SPD:17/17D03" ; Alias "tif6" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR016C; date=19700101 ||| term=species distribution, conserved in Archaea; date=20081106 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213" ; primary_name "tif6" ; product "translation initiation factor eIF6" ;
chromosome3 GeneDB mRNA 28680 29423 . - . mRNA SPCP20C8.01c ; db_xref "SPD:41/41E10" ; systematic_id "SPCP20C8.01c" ; colour "12" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; date=20081212 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090213" ; GO "GO:0070263; external side of fungal-type cell wall" ; gene "SPCP20C8.01c" ; product "cell surface glycoprotein (predicted), DUF2429 family" ;
chromosome3 GeneDB mRNA 1882495 1885740 . + . mRNA SPCC297.05 ; db_xref "SPD:47/47E05" ; systematic_id "SPCC297.05" ; colour "7" ; GO "GO:0019992; diacylglycerol binding
GO:0007165; signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=C1 domain; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; gene "SPCC297.05" ; product "diacylglycerol binding protein (predicted)" ;
chromosome3 GeneDB mRNA 1312798 1315996 . - . mRNA SPCC1322.12c ; systematic_id "SPCC1322.12c" ; colour "2" ; gene "bub1 ||| SPCC1322.12c" ; Alias "bub1" ; db_xref "SPD:30/30A12" ; GO "GO:0000778; condensed nuclear chromosome kinetochore
GO:0005634; nucleus
GO:0005515; protein binding
GO:0008608; attachment of spindle microtubules to kinetochore
GO:0051754; meiotic sister chromatid cohesion, centromeric
GO:0007094; mitotic spindle checkpoint
GO:0034613; cellular protein localization
GO:0034501; protein localization to kinetochore
GO:0034613; cellular protein localization
GO:0072371; histone kinase (H2A-S121 specific) activity
GO:0072370; histone H2A-121 phosphorylation
GO:0034501; protein localization to kinetochore
GO:0051455; attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=pathway, Mad2-dependent checkpoint response; cv=pathway; date=19700101 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:11331883; date=19700101 ||| term=disease associated, cancer; date=19700101 ||| term=orthologous to S. cerevisiae YGR188C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=target is Hta1; qualifier=phosphorylates; db_xref=PMID:19965387; date=20101116 ||| term=target is Hta2; qualifier=phosphorylates; db_xref=PMID:19965387; date=20101116 ||| term=human BUB1 and BUB1B ortholog; date=20101116" ; primary_name "bub1" ; product "serine/threonine protein kinase Bub1" ;
chromosome3 GeneDB mRNA 1347730 1349436 . - . mRNA SPCC338.15 ; systematic_id "SPCC338.15" ; colour "7" ; gene "SPCC338.15" ; Alias "wbp1" ; db_xref "SPD:25/25D06" ; GO "GO:0008250; oligosaccharyl transferase complex
GO:0006487; protein amino acid N-linked glycosylation" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YEL002C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "wbp1" ; product "dolichyl-di-phosphooligosaccharide-protein glycotransferase subunit Wbp1 (predicted)" ;
chromosome3 GeneDB mRNA 1368882 1369259 . - . mRNA SPCC338.02 ; systematic_id "SPCC338.02" ; colour "6" ; gene "SPCC338.02 ||| mug112" ; db_xref "SPD:42/42A10" ; Alias "mug112" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=warning, localization could be overexpression artifact; cv=warning; date=20100127 ||| term=warning, appears to be part of transcript of adjacent gene; cv=warning; date=20100127" ; primary_name "mug112" ; product "dubious" ;
chromosome3 GeneDB mRNA 2167673 2170036 . - . mRNA SPCC1620.12c ; db_xref "SPD:45/45H04" ; systematic_id "SPCC1620.12c" ; colour "7" ; GO "GO:0005097; Rab GTPase activator activity
GO:0006888; ER to Golgi vesicle-mediated transport
GO:0005798; Golgi-associated vesicle
GO:0005886; plasma membrane
GO:0005829; cytosol" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPL249C and YMR192W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC1620.12c" ; product "GTPase activating protein (predicted)" ;
chromosome3 GeneDB mRNA 438715 439700 . - . mRNA SPCC4G3.17 ; db_xref "SPD:06/06E12" ; systematic_id "SPCC4G3.17" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL101W and YBR242W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=human HDDC2 ortholog; date=20100728" ; colour "10" ; gene "SPCC4G3.17" ; product "HD domain metal dependent phosphohydrolase (predicted)" ;
chromosome3 GeneDB mRNA 1492938 1494767 . - . mRNA SPCC188.09c ; db_xref "SPD:46/46A02" ; systematic_id "SPCC188.09c" ; colour "10" ; GO "GO:0007155; cell adhesion
GO:0010339; external side of cell wall" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=GLEYA domain; db_xref=PMID:17870620; date=20081222 ||| term=modification, glycosylated; qualifier=predicted|O-linked; db_xref=PMID:17870620; date=20081222 ||| term=misc functional group, cell surface glycoprotein; cv=m_f_g; qualifier=predicted; date=20090225 ||| term=species distribution, conserved in Fungi; date=20091106 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=20091106 ||| term=species distribution, conserved in Fungi only; date=20091106" ; gene "SPCC188.09c" ; product "cell surface glycoprotein (predicted)" ;
chromosome3 GeneDB mRNA 484910 486011 . - . mRNA SPCC364.01 ; systematic_id "SPCC364.01" ; colour "2" ; gene "cif1 ||| SPCC364.01" ; note "splicing possibly incorrect, non-consensus branch, may use internal Met at position 1166" ; Alias "cif1" ; db_xref "SPD:15/15A11" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, characterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303 ||| term=name description, Calnexin Independence Factor; cv=name_description; db_xref=PMID:19351719; date=20090410 ||| term=phenotype, no phenotype in exponential phase; qualifier=deletion; cv=phenotype; db_xref=PMID:19351719; date=20090428 ||| term=misc, transient overexpression of cif1 induces a stable state of viability in the absence of calnexin; db_xref=PMID:19351719; cv=misc; date=20090428 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:19351719; date=20090428" ; GO "GO:0005730; nucleolus
GO:0006984; ER-nuclear signaling pathway" ; primary_name "cif1" ; product "calnexin independence factor Cif1" ;
chromosome3 GeneDB mRNA 1043602 1044976 . + . mRNA SPCC1259.06 ; systematic_id "SPCC1259.06" ; colour "7" ; gene "SPCC1259.06 ||| taf8" ; Alias "taf8" ; db_xref "SPD:08/08F05" ; synonym "taf8" ; GO "GO:0005669; transcription factor TFIID complex
GO:0003702; RNA polymerase II transcription factor activity
GO:0016251; general RNA polymerase II transcription factor activity
GO:0006366; transcription from RNA polymerase II promoter" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YML114C; date=19700101 ||| term=histone fold; date=20070726 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "taf8" ; product "transcription factor TFIID complex subunit 8 (predicted)" ;
chromosome3 GeneDB mRNA 89737 90417 . + . mRNA SPCC613.06 ; systematic_id "SPCC613.06" ; colour "2" ; gene "rpl902 ||| rpl9-2 ||| SPCC613.06" ; Alias "rpl902" ; db_xref "SPD:06/06A09" ; synonym "rpl9-2" ; GO "GO:0022625; cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0006412; translation
GO:0003735; structural constituent of ribosome" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGL147C and YNL067W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110" ; primary_name "rpl902" ; product "60S ribosomal protein L9" ;
chromosome3 GeneDB mRNA 2394675 2396196 . + . mRNA SPCP1E11.03 ; systematic_id "SPCP1E11.03" ; colour "10" ; gene "SPCP1E11.03 ||| mug170" ; Alias "mug170" ; db_xref "SPD:23/23B05" ; GO "GO:0005737; cytoplasm
GO:0005509; calcium ion binding
GO:0009966; regulation of signal transduction" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=species distribution, orthologs cannot be distinguished; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "mug170" ; product "arrestin" ;
chromosome3 GeneDB mRNA 1936728 1938706 . + . mRNA SPCC74.04 ; db_xref "SPD:35/35A11" ; systematic_id "SPCC74.04" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100824 ||| term=species distribution, conserved in Eukaryotes; date=20100824" ; GO "GO:0015171; amino acid transmembrane transporter activity
GO:0003333; amino acid transmembrane transport" ; gene "SPCC74.04" ; product "amino acid permease (predicted)" ;
chromosome3 GeneDB mRNA 1059935 1061775 . + . mRNA SPCC1259.13 ; systematic_id "SPCC1259.13" ; colour "2" ; gene "chk1 ||| rad27 ||| SPCC1259.13" ; Alias "chk1" ; db_xref "SPD:45/45G09" ; synonym "rad27" ; GO "GO:0005634; nucleus
GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0000077; mitotic cell cycle G2-M transition DNA damage checkpoint
GO:0006468; protein amino acid phosphorylation
GO:0005654; nucleoplasm" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; date=19700101 ||| term=protein sequence feature, NLS; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YBR274W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=gene expression, deletion mutant expression profiling; db_xref=PMID:14668484; date=20090110 ||| term=modification, phosphorylated; cv=pt_mod; date=20090213 ||| term=target is Cdc25; qualifier=phosphorylates|inhibits; db_xref=PMID:9278510; date=20100415 ||| term=target of Rad3; qualifier=phosphorylated_by; db_xref=PMID:10512862; date=20100415" ; primary_name "chk1" ; product "Chk1 protein kinase" ;
chromosome3 GeneDB mRNA 1611127 1612667 . - . mRNA SPCC777.08c ; systematic_id "SPCC777.08c" ; colour "2" ; gene "bit61 ||| SPCC777.08c" ; db_xref "SPD:20/20C11" ; Alias "bit61" ; GO "GO:0031929; TOR signaling pathway
GO:0031932; TORC 2 complex" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YBR270C and YJL058C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:18076567; date=20090213 ||| term=species distribution, conserved in Eukaryotes; date=20080202 ||| term=species distribution, conserved in Vertebrates; date=20091107 ||| term=species distribution, conserved in Metazoa; date=20091107 ||| term=species distribution, conserved in Eukaryotes only; date=20091107" ; primary_name "bit61" ; product "TORC2 subunit Bit61" ;
chromosome3 GeneDB mRNA 1518726 1520321 . + . mRNA SPCC584.14 ; systematic_id "SPCC584.14" ; colour "10" ; gene "SPCC584.14 ||| mug160" ; db_xref "SPD:22/22E06" ; Alias "mug160" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YCR054C; date=19700101 ||| term=disease associated, spinocerebellar ataxia; date=20080428 ||| term=name description, Meiotically Upregulated Gene; cv=name_description; db_xref=PMID:16303567; date=20080908 ||| term=gene expression, expressed during meiosis; cv=gene_ex; db_xref=PMID:16303567; date=20100317 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=disease associated, neurological disorders; date=20091217 ||| term=human ATXN10 ortholog; date=20100728" ; primary_name "mug160" ; product "human ATXN10 ortholog, implicated in amino acid biosynthesis" ;
chromosome3 GeneDB mRNA 1286350 1287451 . + . mRNA SPCC1322.02 ; db_xref "SPD:16/16B09" ; systematic_id "SPCC1322.02" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan; date=19700101 ||| term=species distribution, sequence orphan, uncharacterised; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=species distribution, no apparent orthologs; date=20090303" ; colour "8" ; gene "SPCC1322.02" ; product "sequence orphan" ;
chromosome3 GeneDB mRNA 1520486 1523290 . - . mRNA SPCC584.15c ; db_xref "SPD:28/28E08" ; systematic_id "SPCC584.15c" ; colour "10" ; GO "GO:0005509; calcium ion binding
GO:0009966; regulation of signal transduction" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=arrestin family; date=19700101 ||| term=PY motif; qualifier=predicted; db_xref=PMID:12163175; date=19700101 ||| term=orthologous to S. cerevisiae YOR018W and YFR022W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC584.15c" ; product "arrestin/PY protein 2" ; note "first intron is unsupported, it may be incorrect, CDS may need trimming to exclude this intron, or there may be another but haven't been able to improve this prediction" ;
chromosome3 GeneDB mRNA 585890 589908 . - . mRNA SPCC1672.11c ; db_xref "SPD:39/39D07" ; systematic_id "SPCC1672.11c" ; colour "7" ; GO "GO:0042626; ATPase activity, coupled to transmembrane movement of substances" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YOR291W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=modification, phosphorylated; cv=pt_mod; qualifier=predicted; date=20090213 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125" ; gene "SPCC1672.11c" ; product "P-type ATPase P5 type (predicted)" ;
chromosome3 GeneDB mRNA 1403556 1404877 . - . mRNA SPCC622.01c ; db_xref "SPD:03/03H09" ; systematic_id "SPCC622.01c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" ; colour "6" ; gene "SPCC622.01c" ; product "dubious" ;
chromosome3 GeneDB mRNA 2432612 2432953 . + . mRNA SPCC569.02c ; db_xref "SPD:02/02A12" ; systematic_id "SPCC569.02c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=genome organization, telomeric duplication; cv=genome_org; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; cv=sequence_feature; date=20071122 ||| term=species distribution, identified in S. pombe only; date=20081110" ; colour "12" ; gene "SPCC569.02c" ; product "S. pombe specific UPF0321 family protein 2" ;
chromosome3 GeneDB mRNA 1428855 1430837 . - . mRNA SPCC622.15c ; db_xref "SPD:35/35A10" ; systematic_id "SPCC622.15c" ; colour "8" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, sequence orphan, uncharacterised; date=20090114 ||| term=species distribution, sequence orphan; date=20090114 ||| term=species distribution, no apparent orthologs; date=20090303" ; gene "SPCC622.15c" ; product "sequence orphan" ; note "this was previously annotated as the ortholog Sae2p but was incorrect prediction" ;
chromosome3 GeneDB mRNA 2382500 2384592 . + . mRNA SPCC1827.04 ; db_xref "SPD:36/36E03" ; systematic_id "SPCC1827.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR049W; date=19700101 ||| term=ankyrin repeat protein; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:18257517; cv=pt_mod; date=20100125 ||| term=human ANKZF1 ortholog; date=20100728" ; colour "10" ; gene "SPCC1827.04" ; product "ankyrin repeat protein, unknown biological role" ;
chromosome3 GeneDB mRNA 1617210 1618110 . - . mRNA SPCC777.12c ; db_xref "SPD:10/10H11" ; systematic_id "SPCC777.12c" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=20081110 ||| term=species distribution, identified in S. pombe only; date=20081110 ||| term=thioredoxin family; date=20081111" ; colour "10" ; gene "SPCC777.12c" ; product "thioredoxin family protein" ;
chromosome3 GeneDB mRNA 889327 892295 . - . mRNA SPCC16A11.12c ; systematic_id "SPCC16A11.12c" ; colour "2" ; gene "ubp1 ||| SPCC16A11.12c" ; db_xref "SPD:47/47C02" ; Alias "ubp1" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YJL197W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; GO "GO:0004843; ubiquitin-specific protease activity
GO:0016579; protein deubiquitination
GO:0005783; endoplasmic reticulum" ; primary_name "ubp1" ; product "ubiquitin C-terminal hydrolase Ubp1" ;
chromosome3 GeneDB mRNA 2271785 2273930 . - . mRNA SPCC1840.08c ; db_xref "SPD:35/35C04" ; systematic_id "SPCC1840.08c" ; colour "7" ; GO "GO:0003756; protein disulfide isomerase activity
GO:0005789; endoplasmic reticulum membrane
GO:0006621; protein retention in ER
GO:0030433; ER-associated protein catabolic process" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=thioredoxin family; date=19700101 ||| term=protein sequence feature, N- terminal signal sequence; qualifier=predicted; cv=sequence_feature; date=19700101 ||| term=protein sequence feature, transmembrane helix; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YIL005W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; gene "SPCC1840.08c" ; product "protein disulfide isomerase (predicted)" ;
chromosome3 GeneDB mRNA 993001 994981 . - . mRNA SPCC1795.03 ; systematic_id "SPCC1795.03" ; colour "2" ; gene "gms1 ||| SPCC1795.03" ; Alias "gms1" ; db_xref "SPD:19/19G06" ; GO "GO:0000139; Golgi membrane
GO:0005459; UDP-galactose transmembrane transporter activity
GO:0072334; UDP-galactose transmembrane transport
GO:0000747; conjugation with cellular fusion
GO:0051070; galactomannan biosynthesis
GO:0042125; protein amino acid galactosylation" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:8782411; date=19700101 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "gms1" ; product "UDP-galactose transporter Gms1" ;
chromosome3 GeneDB mRNA 867996 869260 . + . mRNA SPCC16A11.01 ; systematic_id "SPCC16A11.01" ; colour "7" ; gene "SPCC63.15 ||| SPCC16A11.01" ; Alias "SPCC63.15" ; db_xref "SPD:14/14C12" ; synonym "SPCC63.15" ; GO "GO:0048017; inositol lipid-mediated signaling
GO:0007033; vacuole organization and biogenesis
GO:0030036; actin cytoskeleton organization and biogenesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YKL051W; date=19700101 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; primary_name "SPCC63.15" ; product "plasma membrane protein involved in inositol lipid-mediated signaling (predicted)" ;
chromosome3 GeneDB mRNA 314135 315840 . - . mRNA SPCC736.03c ; db_xref "KEGG:MAP00400; ||| KEGG:MAP00970; ||| SPD:22/22D04" ; systematic_id "SPCC736.03c" ; colour "7" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YPR047W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0005739; mitochondrion
GO:0005524; ATP binding
GO:0004826; phenylalanine-tRNA ligase activity
GO:0006432; phenylalanyl-tRNA aminoacylation" ; gene "SPCC736.03c" ; product "mitochondrial phenylalanyl-tRNA synthetase (predicted)" ; EC_number "6.1.1.20" ;
chromosome3 GeneDB mRNA 1613047 1614950 . - . mRNA SPCC777.09c ; systematic_id "SPCC777.09c" ; colour "2" ; gene "arg1 ||| SPCC777.09c" ; Alias "arg1" ; db_xref "KEGG:MAP00220; ||| SPD:45/45B10" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, growth auxotrophic for arginine; db_xref=PMID:17622533; date=20100812 ||| term=orthologous to S. cerevisiae YOL140W; date=19700101 ||| term=experimental tools, selectable marker, amino acid auxotroph; db_xref=PMID:17622533; cv=ex_tools; date=20070716 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; GO "GO:0006592; ornithine biosynthesis
GO:0042450; arginine biosynthesis via ornithine
GO:0006538; glutamate catabolism
GO:0003992; acetylornithine transaminase activity
GO:0005759; mitochondrial matrix" ; primary_name "arg1" ; product "acetylornithine aminotransferase" ; EC_number "2.6.1.11" ;
chromosome3 GeneDB mRNA 289881 293180 . + . mRNA SPCC553.08c ; db_xref "SPD:30/30A08" ; systematic_id "SPCC553.08c" ; colour "7" ; GO "GO:0042254; ribosome biogenesis and assembly
GO:0005737; cytoplasm
GO:0003924; GTPase activity
GO:0005525; GTP binding" ; controlled_curation "term=phenotype, sensitive to UV; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to DNA damaging agents; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YNL163C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; gene "SPCC553.08c" ; product "GTPase Ria1 (predicted)" ;
chromosome3 GeneDB mRNA 862712 866807 . + . mRNA SPCC63.14 ; db_xref "SPD:30/30E07" ; systematic_id "SPCC63.14" ; controlled_curation "term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YMR031C and YKL050C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; colour "10" ; gene "SPCC63.14" ; product "conserved fungal protein" ;
chromosome3 GeneDB mRNA 778133 782134 . - . mRNA SPCC1020.14 ; Alias "Tf2-12" ; systematic_id "SPCC1020.14" ; controlled_curation "term=tf2-type transposon; date=19700101" ; colour "4" ; gene "Tf2-12 ||| SPCC1020.14" ; primary_name "Tf2-12" ; product "retrotransposable element" ;
chromosome3 GeneDB mRNA 1606450 1607825 . - . mRNA SPCC777.06c ; db_xref "SPD:16/16D09" ; systematic_id "SPCC777.06c" ; colour "10" ; GO "GO:0016787; hydrolase activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827" ; gene "SPCC777.06c" ; product "hydrolase (predicted)" ;
chromosome3 GeneDB mRNA 1482007 1482273 . + . mRNA SPCC188.05 ; systematic_id "SPCC188.05" ; colour "6" ; gene "SPCC188.05" ; product "dubious" ;
chromosome3 GeneDB mRNA 1413637 1416150 . - . mRNA SPCC622.10c ; systematic_id "SPCC622.10c" ; colour "7" ; gene "SPCC622.10c" ; note "similar to A. gossypii AGL158C (fasta), A. gossypii AGL158C is syntentic ortholog of S. cerevisiae YDR166C, similarity also from PSI Blast with S. cerevisiae YDR166, but not detectable via Blast or Fasta" ; db_xref "SPD:29/29B08" ; GO "GO:0000145; exocyst
GO:0006887; exocytosis" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR166C; date=19700101 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=species distribution, conserved in Eukaryotes; date=20080202" ; product "exocyst complex subunit Sec5 (predicted)" ;
chromosome3 GeneDB mRNA 405602 407471 . + . mRNA SPCC1682.16 ; systematic_id "SPCC1682.16" ; colour "7" ; gene "rpt4 ||| SPCC1682.16" ; Alias "rpt4" ; obsolete_name "SPCC306.01" ; db_xref "SPD:06/06C02" ; GO "GO:0005634; nucleus
GO:0008540; proteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524; ATP binding
GO:0016887; ATPase activity
GO:0004175; endopeptidase activity
GO:0043161; proteasomal ubiquitin-dependent protein catabolism
GO:0000278; mitotic cell cycle
GO:0006511; ubiquitin-dependent protein catabolism" ; controlled_curation "term=AAA family ATPase; date=19700101 ||| term=orthologous to S. cerevisiae YOR259C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "rpt4" ; product "19S proteasome regulatory subunit Rpt4 (predicted)" ;
chromosome3 GeneDB mRNA 2412365 2412988 . + . mRNA SPCC569.08c ; systematic_id "SPCC569.08c" ; colour "7" ; obsolete_name "ade8" ; db_xref "SPD:07/07B01" ; Alias "ade5" ; GO "GO:0005634; nucleus
GO:0005737; cytoplasm
GO:0006189; 'de novo' IMP biosynthesis
GO:0004644; phosphoribosylglycinamide formyltransferase activity
GO:0046084; adenine biosynthesis" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR408C; date=19700101 ||| term=warning, named from map position ade5; cv=warning; date=20100326 ||| term=warning, gene name conflict; date=20100326 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Bacteria; date=20100820" ; primary_name "ade5" ; product "phosphoribosylglycinamide formyltransferase (predicted)" ; EC_number "2.1.2.2" ;
chromosome3 GeneDB mRNA 675369 677136 . - . mRNA SPCC16C4.08c ; systematic_id "SPCC16C4.08c" ; colour "2" ; gene "skb15 ||| SPCC16C4.08c" ; Alias "skb15" ; db_xref "SPD:20/20B08" ; GO "GO:0005515; protein binding
GO:0070507; regulation of microtubule cytoskeleton organization
GO:0071775; regulation of cell cycle cytokinesis
GO:0005634; nucleus
GO:0030685; nucleolar preribosome
GO:0042254; ribosome biogenesis and assembly" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; date=19700101 ||| term=orthologous to S. cerevisiae YKL021C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=name description, Shk1 Kinase Binding protein; date=20101101 ||| term=human PAK1IP1 ortholog; date=20110113" ; primary_name "skb15" ; product "p21 activated protein kinase inhibitor Skb15" ;
chromosome3 GeneDB mRNA 1467695 1471426 . + . mRNA SPCC11E10.08 ; systematic_id "SPCC11E10.08" ; colour "2" ; gene "rik1 ||| SPCC11E10.08" ; Alias "rik1" ; db_xref "SPD:47/47H06" ; GO "GO:0043494; Rik1-E3 ubiquitin ligase complex
GO:0000790; nuclear chromatin
GO:0003677; DNA binding
GO:0030702; chromatin silencing at centromere
GO:0030466; chromatin silencing at silent mating- type cassette
GO:0006348; chromatin silencing at telomere
GO:0007535; donor selection
GO:0030989; horsetail nuclear movement
GO:0051572; negative regulation of histone H3-K4 methylation
GO:0051574; positive regulation of histone H3-K9 methylation
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0034613; cellular protein localization
GO:0045141; telomere clustering
GO:0000723; telomere maintenance
GO:0035391; maintenance of chromatin silencing at silent mating-type cassette" ; controlled_curation "term=phenotype, sensitive to TBZ; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, sensitive to microtubule depolymerizing drugs; db_xref=PMID:20537132; qualifier=deletion|fitness_profiling; cv=phenotype; date=20100406 ||| term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=WD repeat protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, no apparent orthologs, S. pombe variant; date=19700101 ||| term=rik1/ddb1 subfamily; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "rik1" ; product "silencing protein Rik1" ;
chromosome3 GeneDB mRNA 758590 762606 . - . mRNA SPCC1020.10 ; systematic_id "SPCC1020.10" ; colour "2" ; db_xref "SPD:27/27A04" ; Alias "oca2" ; GO "GO:0004674; protein serine/threonine kinase activity
GO:0006468; protein amino acid phosphorylation
GO:0005524; ATP binding
GO:0006808; regulation of nitrogen utilization
GO:0005515; protein binding
GO:0005515; protein binding
GO:0034763; negative regulation of transmembrane transport" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:15821139; date=19700101 ||| term=phenotype, cell cycle defects; qualifier=overexpression; db_xref=PMID:12237855; cv=phenotype; date=20080728 ||| term=phenotype, growth defect, slow growth in minimal media; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=phenotype, resistance to rapamycin; qualifier=in_minimal_media; db_xref=PMID:20404084; cv=phenotype; date=20100504 ||| term=orthologous to S. cerevisiae YNL183C and YOR267C and YDL025C and YDL214C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Fungi only; date=20081110 ||| term=gene expression, transcriptionally represses per1; db_xref=PMID:20404084; date=20100504 ||| term=modification, phosphorylated; db_xref=PMID:19547744; cv=pt_mod; date=20100606 ||| term=modification, phosphorylated; cv=pt_mod; db_xref=PMID:20404084; date=20100504" ; primary_name "oca2" ; product "serine/threonine protein kinase Oca2" ;
chromosome3 GeneDB mRNA 86328 88637 . - . mRNA SPCC613.04c ; systematic_id "SPCC613.04c" ; colour "2" ; gene "rng3 ||| SPCC613.04c" ; Alias "rng3" ; db_xref "SPD:28/28A06" ; GO "GO:0005826; contractile ring
GO:0017022; myosin binding
GO:0005515; protein binding
GO:0000915; cytokinesis, contractile ring formation
GO:0034613; cellular protein localization
GO:0051083; 'de novo' cotranslational protein folding
GO:0003729; mRNA binding
GO:0005884; polysome" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, cell morphology, elongated dumbbell; db_xref=PMID:????????; date=20100802 ||| term=orthologous to S. cerevisiae YOR035C; date=19700101 ||| term=armadillo repeat protein; qualifier=inferred from context; date=19700101 ||| term=TPR repeat protein; qualifier=inferred from context; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110 ||| term=target is myp2; qualifier=mRNA; db_xref=PMID:19098712; date=20090108 ||| term=target is myo51; qualifier=mRNA; db_xref=PMID:19098712; date=20090108 ||| term=target is myo2; qualifier=mRNA; db_xref=PMID:19098712; date=20090108 ||| term=target is myo1; qualifier=mRNA; db_xref=PMID:19098712; date=20090108 ||| term=target is myo52; qualifier=mRNA; db_xref=PMID:19098712; date=20090108" ; primary_name "rng3" ; product "UCS-domain protein Rng3" ;
chromosome3 GeneDB mRNA 912536 915011 . + . mRNA SPCC24B10.07 ; systematic_id "SPCC24B10.07" ; colour "2" ; gene "gad8 ||| SPCC24B10.07" ; Alias "gad8" ; db_xref "SPD:45/45G11" ; GO "GO:0005524; ATP binding
GO:0005515; protein binding
GO:0005515; protein binding
GO:0004674; protein serine/threonine kinase activity
GO:0031929; TOR signaling pathway
GO:0031142; induction of conjugation upon nitrogen starvation
GO:0006468; protein amino acid phosphorylation
GO:2000248; negative regulation of establishment or maintenance of bipolar cell polarity resulting in cell shape
GO:0007346; regulation of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12805221; date=19700101 ||| term=phenotype, cell morphology, elongated cells; allele=gad2-1; cv=phenotype; db_xref=PMID:12805221; date=19700101 ||| term=orthologous to S. cerevisiae YKL126W and YMR104C; date=19700101 ||| term=C2 domain; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=modification, phosphorylated; db_xref=PMID:12805221; cv=pt_mod; date=20090213 ||| term=target of Ksg1; qualifier=phosphorylated_by; db_xref=PMID:12805221; date=20100826" ; primary_name "gad8" ; product "AGC family protein kinase Gad8" ;
chromosome3 GeneDB mRNA 475890 479025 . - . mRNA SPCC364.05 ; systematic_id "SPCC364.05" ; colour "7" ; gene "vps3 ||| SPCC364.05" ; Alias "vps3" ; db_xref "SPD:29/29G04" ; GO "GO:0006623; protein targeting to vacuole
GO:0006886; intracellular protein transport
GO:0005737; cytoplasm
GO:0005083; small GTPase regulator activity" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YDR495C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110" ; primary_name "vps3" ; product "GTPase regulator Vps3 (predicted)" ;
chromosome3 GeneDB mRNA 2086711 2088141 . + . mRNA SPCC576.04 ; db_xref "SPD:10/10B07" ; systematic_id "SPCC576.04" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, transmembrane helices; cv=sequence_feature; date=19700101 ||| term=orthologous to S. cerevisiae YNL305C; date=19700101 ||| term=human TMBIM4 ortholog; date=20080428 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100902" ; colour "10" ; gene "SPCC576.04" ; product "conserved eukaryotic protein" ;
chromosome3 GeneDB mRNA 36421 36657 . + . mRNA SPCP20C8.04 ; Alias "new22" ; systematic_id "SPCP20C8.04" ; controlled_curation "term=DUF1773; date=20090723 ||| term=no apparent S. cerevisiae ortholog; date=19700101 ||| term=coiled-coil; qualifier=predicted|region; date=20090723 ||| term=conserved in Fungi; date=20090723 ||| term=conserved in Fungi only; date=20090723 ||| term=cell surface glycoprotein; date=20090723 ||| term=modification, glycosylated; cv=pt_mod; qualifier=predicted; date=20090723 ||| term=warning, new gene; db_xref=PMID:21270388; date=20110131" ; colour "12" ; primary_name "new22" ; product "cell surface glycoprotein (predicted), DUF1773 family protein 6" ;
chromosome3 GeneDB mRNA 1356162 1357371 . + . mRNA SPCC338.11c ; systematic_id "SPCC338.11c" ; colour "2" ; gene "rrg1 ||| uvi22 ||| SPCC338.11c" ; Alias "rrg1" ; db_xref "SPD:12/12F06" ; synonym "uvi22" ; GO "GO:0008757; S-adenosylmethionine-dependent methyltransferase activity
GO:0010972; negative regulation of G2/M transition of mitotic cell cycle" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=phenotype, viable; cv=phenotype; db_xref=PMID:12442907; date=19700101 ||| term=phenotype, cell morphology, elongated cells; qualifier=overexpression; db_xref=PMID:12442907; date=20100712 ||| term=gene expression, expression induced by glucose; db_xref=PMID:11861905; date=19700101 ||| term=gene expression, regulated by mRNA stability; db_xref=PMID:11861905; cv=gene_ex; date=19700101 ||| term=target of SAPK pathway; db_xref=PMID:12521309; date=19700101 ||| term=orthologous to S. cerevisiae YBR271W; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081124" ; primary_name "rrg1" ; product "methyltransferase Rrg1 (predicted)" ;
chromosome3 GeneDB mRNA 892406 893836 . + . mRNA SPCC16A11.13 ; systematic_id "SPCC16A11.13" ; colour "2" ; gene "usp106 ||| luc7 ||| SPCC16A11.13" ; Alias "usp106" ; db_xref "SPD:10/10A09" ; synonym "luc7" ; GO "GO:0005685; snRNP U1
GO:0003729; mRNA binding
GO:0006376; mRNA splice site selection
GO:0000395; nuclear mRNA 5'-splice site recognition" ; controlled_curation "term=phenotype, inviable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=protein sequence feature, coiled-coil; qualifier=predicted|region; date=19700101 ||| term=orthologous to S. cerevisiae YDL087C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, conserved in Eukaryotes only; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; primary_name "usp106" ; product "U1 snRNP-associated protein Usp106" ;
chromosome3 GeneDB mRNA 704853 706946 . - . mRNA SPCPJ732.02c ; db_xref "SPD:49/49C07" ; systematic_id "SPCPJ732.02c" ; colour "7" ; controlled_curation "term=phenotype, viable; qualifier=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406 ||| term=orthologous to S. cerevisiae YGR194C; date=19700101 ||| term=species distribution, conserved in Eukaryotes; date=20081110 ||| term=species distribution, conserved in Bacteria; date=20081110 ||| term=species distribution, conserved in Metazoa; date=20081110 ||| term=species distribution, conserved in Vertebrates; date=20081110 ||| term=species distribution, conserved in Fungi; date=20081110 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20081110" ; GO "GO:0004856; xylulokinase activity
GO:0005998; xylulose catabolic process" ; gene "SPCPJ732.02c" ; product "xylulose kinase (predicted)" ; EC_number "2.7.1.17" ;
mating_type_region GeneDB Contig 1 20128 . + . Sequence mating_type_region ; Alias mating_type_region
mating_type_region GeneDB misc_feature 1 2120 . + . misc_feature unknown_1 ; note "IR-L" ;
mating_type_region GeneDB misc_feature 3203 3259 . + . misc_feature H3 ; gene "H3" ; note "H3 homology box" ;
mating_type_region GeneDB misc_feature 3260 3394 . + . misc_feature H2 ; gene "H2" ; note "H2 Homology box" ;
mating_type_region GeneDB CDS_parts 3354 3710 . - . mRNA SPMTR.01 ; systematic_id "SPMTR.01" ; colour "2" ; protein_id "CAA30482.1" ; gene "matPc" ; db_xref "GI:4983 ||| GOA:P10841 ||| InterPro:IPR000910 ||| InterPro:IPR009071 ||| UniProtKB/Swiss-Prot:P10841" ; Alias "matPc" ; primary_name "matPc" ; product "P-specific polypeptide Pc" ;
mating_type_region GeneDB CDS 3354 3710 . - . mRNA SPMTR.01 ; colour "2" ;
mating_type_region GeneDB misc_feature 3395 4497 . + . misc_feature mat2-P ; gene "mat2-P" ; note "mat2-P" ;
mating_type_region GeneDB 5'-UTR 3711 3753 . - . mRNA SPMTR.01 ; systematic_id "SPMTR.01" ; note "Pc transcription initiation site" ;
mating_type_region GeneDB 5'-UTR 3861 3888 . + . mRNA SPMTR.02 ; systematic_id "SPMTR.02" ; note "Pi transcription initiation site" ;
mating_type_region GeneDB CDS_parts 3889 4368 . + . mRNA SPMTR.02 ; systematic_id "SPMTR.02" ; colour "2" ; protein_id "CAA30483.1" ; gene "matPi" ; db_xref "GI:4984 ||| GOA:P10842 ||| InterPro:IPR001356 ||| InterPro:IPR009057 ||| InterPro:IPR012287 ||| UniProtKB/Swiss-Prot:P10842" ; Alias "matPi" ; primary_name "matPi" ; product "P-specific polypeptide Pi" ;
mating_type_region GeneDB CDS 3889 4368 . + . mRNA SPMTR.02 ; colour "2" ;
mating_type_region GeneDB misc_feature 4498 4556 . + . misc_feature H1 ; gene "H1" ; note "H1 homology box" ;
mating_type_region GeneDB misc_feature 9170 13408 . + . misc_feature cenH ; gene "cenH" ; note "cenH" ;
mating_type_region GeneDB misc_feature 15417 15473 . + . misc_feature H3 ; gene "H3" ; note "H3 homology box" ;
mating_type_region GeneDB misc_feature 15474 15608 . + . misc_feature H2 ; gene "H2" ; note "H2 homology box" ;
mating_type_region GeneDB CDS_parts 15593 15721 . - . mRNA SPMTR.03 ; Alias "matMi" ; systematic_id "SPMTR.03" ; colour "2" ; primary_name "matMi" ; gene "matMi" ; product "mating-type m-specific polypeptide Mi" ; note "NOTE:equivalent to SPBC1711.01c" ;
mating_type_region GeneDB CDS 15593 15721 . - . mRNA SPMTR.03 ; colour "2" ;
mating_type_region GeneDB misc_feature 15609 16735 . + . misc_feature mat-3M ; gene "mat-3M" ; note "mat-3M" ;
mating_type_region GeneDB CDS_parts 15856 16401 . + . mRNA SPMTR.04 ; Alias "matMc" ; systematic_id "SPMTR.04" ; colour "2" ; primary_name "matMc" ; gene "matMc ||| SPBC1711.02" ; product "mating-type m-specific polypeptide Mc" ;
mating_type_region GeneDB CDS 15856 16401 . + . mRNA SPMTR.04 ; colour "2" ;
mating_type_region GeneDB misc_feature 16736 16794 . + . misc_feature H1 ; gene "H1" ; note "H1 homology box" ;
mating_type_region GeneDB misc_feature 18009 20128 . + . misc_feature unknown_2 ; note "IR-R" ;
mating_type_region GeneDB RealContig 1 20128 . . . RealContig mating_type_region
mating_type_region GeneDB mRNA 3861 4368 . + . mRNA SPMTR.02 ; systematic_id "SPMTR.02" ; colour "2" ; protein_id "CAA30483.1" ; gene "matPi" ; db_xref "GI:4984 ||| GOA:P10842 ||| InterPro:IPR001356 ||| InterPro:IPR009057 ||| InterPro:IPR012287 ||| UniProtKB/Swiss-Prot:P10842" ; Alias "matPi" ; primary_name "matPi" ; product "P-specific polypeptide Pi" ;
mating_type_region GeneDB mRNA 15856 16401 . + . mRNA SPMTR.04 ; Alias "matMc" ; systematic_id "SPMTR.04" ; colour "2" ; primary_name "matMc" ; gene "matMc ||| SPBC1711.02" ; product "mating-type m-specific polypeptide Mc" ;
mating_type_region GeneDB mRNA 3354 3753 . - . mRNA SPMTR.01 ; systematic_id "SPMTR.01" ; colour "2" ; protein_id "CAA30482.1" ; gene "matPc" ; db_xref "GI:4983 ||| GOA:P10841 ||| InterPro:IPR000910 ||| InterPro:IPR009071 ||| UniProtKB/Swiss-Prot:P10841" ; Alias "matPc" ; primary_name "matPc" ; product "P-specific polypeptide Pc" ;
mating_type_region GeneDB mRNA 15593 15721 . - . mRNA SPMTR.03 ; Alias "matMi" ; systematic_id "SPMTR.03" ; colour "2" ; primary_name "matMi" ; gene "matMi" ; product "mating-type m-specific polypeptide Mi" ; note "NOTE:equivalent to SPBC1711.01c" ;
Spmit GeneDB Contig 1 19431 . + . Sequence Spmit ; Alias Spmit
Spmit GeneDB source 1 19431 . + . source unknown_1 ; db_xref "taxon:4896" ; allele "ad7-50h-." ; organelle "mitochondrion" ; organism "Schizosaccharomyces pombe" ;
Spmit GeneDB rRNA 1 2822 . + . rRNA SPRRNA.01 ; Alias "21S_rRNA" ; systematic_id "SPRRNA.01" ; primary_name "21S_rRNA" ; gene "21S_rRNA" ; product "21S rRNA" ;
Spmit GeneDB conflict 2091 2091 . + . conflict unknown_2 ; replace "g" ; citation "[2]" ;
Spmit GeneDB tRNA 2857 2929 . + . tRNA SPMITTRNALYS.01 ; systematic_id "SPMITTRNALYS.01" ; GO "GO:0006414; translational elongation
GO:0033443; AAA codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNALYS.01" ; product "tRNA Lysine, mitochondrial" ;
Spmit GeneDB tRNA 2968 3050 . + . tRNA SPMITTRNASER.01 ; systematic_id "SPMITTRNASER.01" ; GO "GO:0006414; translational elongation
GO:0033446; AGC codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNASER.01" ; product "tRNA Serine, mitochondrial" ;
Spmit GeneDB tRNA 3060 3130 . + . tRNA SPMITTRNAASN.01 ; systematic_id "SPMITTRNAASN.01" ; GO "GO:0006414; translational elongation
GO:0033442; AAC codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAASN.01" ; product "tRNA Asparagine, mitochondrial" ;
Spmit GeneDB rRNA 3131 4552 . + . rRNA SPRRNA.02 ; Alias "15S_rRNA" ; systematic_id "SPRRNA.02" ; primary_name "15S_rRNA" ; gene "15S_rRNA" ; product "15S rRNA" ;
Spmit GeneDB conflict 4102 4102 . + . conflict unknown_3 ; replace "g" ; citation "[3]" ;
Spmit GeneDB tRNA 4591 4665 . + . tRNA SPMITTRNAMET.01 ; systematic_id "SPMITTRNAMET.01" ; GO "GO:0006412; translation
GO:0033436; ATG codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAMET.01" ; product "tRNA Methionine, mitochondrial" ;
Spmit GeneDB CDS_parts 4886 8790 . + . mRNA SPMIT.01 ; systematic_id "SPMIT.01" ; colour "2" ; gene "cox1" ; Alias "cox1" ; db_xref "Uniprot:P07657" ; GO "GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration" ; controlled_curation "term=orthologous to S. cerevisiae Q0045; date=20070727 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; primary_name "cox1" ; product "cytochrome c oxidase 1 (predicted)" ;
Spmit GeneDB CDS 4886 5289 . + . mRNA SPMIT.01 ; colour "2" ;
Spmit GeneDB CDS 6500 6844 . + . mRNA SPMIT.01 ; colour "2" ;
Spmit GeneDB CDS 7926 8790 . + . mRNA SPMIT.01 ; colour "2" ;
Spmit GeneDB intron 5290 6499 . + . intron SPMIT.01 ; systematic_id "SPMIT.01" ;
Spmit GeneDB CDS_parts 5291 6445 . + . mRNA SPMIT.02 ; systematic_id "SPMIT.02" ; colour "7" ; note "intronic ORF" ; db_xref "UniProtKB:P22191" ; controlled_curation "term=genome organization, protein in cox1 intron-1; cv=genome_org; date=20070727 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Archaea; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; GO "GO:0006314; intron homing
GO:0005739; mitochondrion
GO:0003677; DNA binding
GO:0004519; endonuclease activity" ; product "mitochondrial DNA binding endonuclease (predicted)" ;
Spmit GeneDB CDS 5291 6445 . + . mRNA SPMIT.02 ; colour "7" ;
Spmit GeneDB CDS_parts 6845 7817 . + 1 mRNA SPMIT.03 ; systematic_id "SPMIT.03" ; colour "7" ; db_xref "UniProtKB:P22190" ; codon_start "2" ; GO "GO:0006314; intron homing
GO:0005739; mitochondrion
GO:0003677; DNA binding
GO:0004519; endonuclease activity" ; controlled_curation "term=genome organization, protein in cox1 intron-2; cv=genome_org; date=20070727 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Archaea; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; product "mitochondrial DNA binding endonuclease (predicted)" ;
Spmit GeneDB CDS 6845 7817 . + 1 mRNA SPMIT.03 ; colour "7" ;
Spmit GeneDB intron 6845 7925 . + . intron SPMIT.01 ; systematic_id "SPMIT.01" ;
Spmit GeneDB CDS_parts 8947 9765 . + . mRNA SPMIT.04 ; systematic_id "SPMIT.04" ; colour "7" ; gene "cox3" ; Alias "cox3" ; controlled_curation "term=orthologous to S. cerevisiae Q0275; date=20070727 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; GO "GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0004129; cytochrome-coxidase activity
GO:0009060; aerobic respiration" ; primary_name "cox3" ; product "cytochrome c oxidase 3 (predicted)" ; EC_number "1.9.3.1" ;
Spmit GeneDB CDS 8947 9765 . + . mRNA SPMIT.04 ; colour "7" ;
Spmit GeneDB tRNA 9818 9894 . + . tRNA SPMITTRNAARG.01 ; systematic_id "SPMITTRNAARG.01" ; GO "GO:0006414; translational elongation
GO:0033447; AGA codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAARG.01" ; product "tRNA Arginine, mitochondrial" ;
Spmit GeneDB tRNA 9920 9992 . + . tRNA SPMITTRNATHR.01 ; GO "GO:0006414; translational elongation
GO:0033439; ACA codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNATHR.01" ; product "tRNA Threonine, mitochondrial" ; note "anticodon=ugu, thr" ;
Spmit GeneDB CDS_parts 10173 13862 . + . mRNA SPMIT.05 ; systematic_id "SPMIT.05" ; colour "7" ; gene "cob1 ||| cob ||| SPMIT.05" ; Alias "cob1" ; db_xref "UniProtKB:P05501" ; synonym "cob" ; GO "GO:0005750; mitochondrial respiratory chain complex III
GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c" ; controlled_curation "term=orthologous to S. cerevisiae Q0105; date=20070727 ||| term=species distribution, conserved in Eukaryotes; date=20070727 ||| term=species distribution, conserved in Bacteria; date=20070727 ||| term=species distribution, conserved in Metazoa; date=20090507 ||| term=species distribution, conserved in Vertebrates; date=20090507" ; primary_name "cob1" ; product "cytochrome b, Cob1 (predicted)" ;
Spmit GeneDB CDS 10173 10856 . + . mRNA SPMIT.05 ; colour "7" ;
Spmit GeneDB CDS 13383 13862 . + . mRNA SPMIT.05 ; colour "7" ;
Spmit GeneDB CDS_parts 10857 13280 . + . mRNA SPMIT.06 ; systematic_id "SPMIT.06" ; colour "7" ; note "intronic ORF" ; db_xref "UniProtKB:P05511" ; controlled_curation "term=genome organization, protein in cob intron; cv=genome_org; date=20070727 ||| term=orthologous to S. cerevisiae Q0050 and Q0055; date=20070727 ||| term=species distribution, conserved in Fungi; date=20070727 ||| term=species distribution, conserved in Bacteria; date=20070727" ; GO "GO:0005739; mitochondrion
GO:0003677; DNA binding
GO:0004519; endonuclease activity
GO:0008380; RNA splicing
GO:0045333; cellular respiration
GO:0006315; homing of group II introns" ; product "mitochondrial DNA binding endonuclease (predicted)" ;
Spmit GeneDB CDS 10857 13280 . + . mRNA SPMIT.06 ; colour "7" ;
Spmit GeneDB intron 10857 13382 . + . intron SPMIT.05 ; systematic_id "SPMIT.05" ;
Spmit GeneDB tRNA 14081 14153 . + . tRNA SPMITTRNAMET.02 ; systematic_id "SPMITTRNAMET.02" ; GO "GO:0006412; translation
GO:0033436; ATG codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAMET.02" ; product "tRNA Methionine, mitochondrial" ;
Spmit GeneDB tRNA 14159 14230 . + . tRNA SPMITTRNAPHE.01 ; systematic_id "SPMITTRNAPHE.01" ; GO "GO:0006414; translational elongation
GO:0033402; TTC codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAPHE.01" ; product "tRNA Phenylalanine, mitochondrial" ;
Spmit GeneDB tRNA 14238 14308 . + . tRNA SPMITTRNAASP.01 ; systematic_id "SPMITTRNAASP.01" ; GO "GO:0006414; translational elongation
GO:0033458; GAC codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAASP.01" ; product "tRNA Aspartic acid, mitochondrial" ;
Spmit GeneDB tRNA 14314 14385 . + . tRNA SPMITTRNAGLY.01 ; systematic_id "SPMITTRNAGLY.01" ; GO "GO:0006414; translational elongation
GO:0033463; GGA codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAGLY.01" ; product "tRNA Glycine, mitochondrial" ;
Spmit GeneDB tRNA 14394 14476 . + . tRNA SPMITTRNALEU.01 ; systematic_id "SPMITTRNALEU.01" ; GO "GO:0006414; translational elongation
GO:0033403; TTA codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNALEU.01" ; product "tRNA Leucine, mitochondrial" ;
Spmit GeneDB tRNA 14492 14563 . + . tRNA SPMITTRNATRP.01 ; systematic_id "SPMITTRNATRP.01" ; GO "GO:0006414; translational elongation
GO:0033416; TGG codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNATRP.01" ; product "tRNA Tryptophan, mitochondrial" ;
Spmit GeneDB tRNA 14596 14669 . + . tRNA SPMITTRNALEU.02 ; systematic_id "SPMITTRNALEU.02" ; GO "GO:0006414; translational elongation
GO:0033419; CTA codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNALEU.02" ; product "tRNA Leucine, mitochondrial" ;
Spmit GeneDB CDS_parts 14756 15529 . + . mRNA SPMIT.07 ; systematic_id "SPMIT.07" ; colour "7" ; gene "atp6" ; Alias "atp6" ; db_xref "UniProtKB:P21535" ; GO "GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0005198; structural molecule activity
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=orthologous to S. cerevisiae Q0085; date=20070911 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; primary_name "atp6" ; product "F0-ATPase subunit 6 (predicted)" ;
Spmit GeneDB CDS 14756 15529 . + . mRNA SPMIT.07 ; colour "7" ;
Spmit GeneDB tRNA 15550 15622 . + . tRNA SPMITTRNAHIS.01 ; systematic_id "SPMITTRNAHIS.01" ; GO "GO:0006414; translational elongation
GO:0033426; CAC codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAHIS.01" ; product "tRNA Histidine, mitochondrial" ;
Spmit GeneDB tRNA 15661 15735 . + . tRNA SPMITTRNAPRO.01 ; systematic_id "SPMITTRNAPRO.01" ; GO "GO:0006414; translational elongation
GO:0033442; ACC codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAPRO.01" ; product "tRNA Proline, mitochondrial" ;
Spmit GeneDB tRNA 15747 15819 . + . tRNA SPMITTRNAGLN.01 ; systematic_id "SPMITTRNAGLN.01" ; GO "GO:0006414; translational elongation
GO:0033442; AAC codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAGLN.01" ; product "tRNA Glutamine, mitochondrial" ;
Spmit GeneDB CDS_parts 15954 16637 . + . mRNA SPMIT.08 ; db_xref "UniProtKB:P21547" ; systematic_id "SPMIT.08" ; colour "7" ; controlled_curation "term=species distribution, conserved in Fungi; date=20070727 ||| term=orthologous to S. cerevisiae Q0140; date=20070727" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0006412; translation" ; product "mitochondrial ribosomal small subunit (predicted)" ;
Spmit GeneDB CDS 15954 16637 . + . mRNA SPMIT.08 ; colour "7" ;
Spmit GeneDB tRNA 16662 16734 . + . tRNA SPMITTRNAILE.01 ; systematic_id "SPMITTRNAILE.01" ; GO "GO:0006414; translational elongation
GO:0033434; ATC codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAILE.01" ; product "tRNA Isoleucine, mitochondrial" ;
Spmit GeneDB CDS_parts 16914 17060 . + . mRNA SPMIT.09 ; systematic_id "SPMIT.09" ; colour "7" ; gene "atp8" ; Alias "atp8" ; db_xref "UniProtKB:P21536" ; GO "GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=species distribution, conserved in Fungi; date=20070212 ||| term=orthologous to S. cerevisiae Q0080; date=20071118" ; primary_name "atp8" ; product "F0-ATPase subunit 8 (predicted)" ;
Spmit GeneDB CDS 16914 17060 . + . mRNA SPMIT.09 ; colour "7" ;
Spmit GeneDB tRNA 17082 17150 . + . tRNA SPMITTRNACYS.01 ; systematic_id "SPMITTRNACYS.01" ; GO "GO:0006414; translational elongation
GO:0033414; TGC codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNACYS.01" ; product "tRNA Cysteine, mitochondrial" ;
Spmit GeneDB tRNA 17166 17238 . + . tRNA SPMITTRNAVAL.01 ; systematic_id "SPMITTRNAVAL.01" ; GO "GO:0006414; translational elongation
GO:0033451; GTA codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAVAL.01" ; product "tRNA Valine, mitochondrial" ;
Spmit GeneDB tRNA 17257 17342 . + . tRNA SPMITTRNATYR.01 ; systematic_id "SPMITTRNATYR.01" ; GO "GO:0006414; translational elongation
GO:0033410; TAC codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNATYR.01" ; product "tRNA Tyrosine, mitochondrial" ;
Spmit GeneDB tRNA 17460 17532 . + . tRNA SPMITTRNAARG.02 ; systematic_id "SPMITTRNAARG.02" ; GO "GO:0006414; translational elongation
GO:0033431; CGA codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAARG.02" ; product "tRNA Arginine, mitochondrial" ;
Spmit GeneDB tRNA 17542 17613 . + . tRNA SPMITTRNAILE.02 ; systematic_id "SPMITTRNAILE.02" ; GO "GO:0006412; translation
GO:0033436; ATG codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAILE.02" ; product "tRNA Isoleucine, mitochondrial" ;
Spmit GeneDB tRNA 17635 17716 . + . tRNA SPMITTRNASER.02 ; systematic_id "SPMITTRNASER.02" ; GO "GO:0006414; translational elongation
GO:0033407; TCA codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNASER.02" ; product "tRNA Serine, mitochondrial" ;
Spmit GeneDB CDS_parts 17806 18030 . + . mRNA SPMIT.10 ; systematic_id "SPMIT.10" ; colour "7" ; gene "atp9" ; Alias "atp9" ; db_xref "UniProtKB:P21537" ; GO "GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=orthologous to S. cerevisiae Q0130; date=20080204 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820" ; primary_name "atp9" ; product "F0-ATPase subunit 9 (predicted)" ; EC_number "3.6.3.14" ;
Spmit GeneDB CDS 17806 18030 . + . mRNA SPMIT.10 ; colour "7" ;
Spmit GeneDB tRNA 18057 18129 . + . tRNA SPMITTRNAALA.01 ; systematic_id "SPMITTRNAALA.01" ; GO "GO:0006414; translational elongation
GO:0033455; GCA codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAALA.01" ; product "tRNA Alanine, mitochondrial" ;
Spmit GeneDB tRNA 18404 18475 . + . tRNA SPMITTRNAGLU.01 ; systematic_id "SPMITTRNAGLU.01" ; GO "GO:0006414; translational elongation
GO:0033459; GAA codon-amino acid adaptor activity
GO:0005739; mitochondrion" ; gene "SPMITTRNAGLU.01" ; product "tRNA Glutamic acid, mitochondrial" ;
Spmit GeneDB CDS_parts 18561 19307 . + . mRNA SPMIT.11 ; systematic_id "SPMIT.11" ; colour "7" ; gene "cox2" ; Alias "cox2" ; db_xref "UniProtKB:P21534" ; GO "GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration" ; controlled_curation "term=orthologous to S. cerevisiae Q0250; date=20070911 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; primary_name "cox2" ; product "cytochrome c oxidase 2 (predicted)" ;
Spmit GeneDB CDS 18561 19307 . + . mRNA SPMIT.11 ; colour "7" ;
Spmit GeneDB RealContig 1 19431 . . . RealContig Spmit
Spmit GeneDB mRNA 14756 15529 . + . mRNA SPMIT.07 ; systematic_id "SPMIT.07" ; colour "7" ; gene "atp6" ; Alias "atp6" ; db_xref "UniProtKB:P21535" ; GO "GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0005198; structural molecule activity
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=orthologous to S. cerevisiae Q0085; date=20070911 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; primary_name "atp6" ; product "F0-ATPase subunit 6 (predicted)" ;
Spmit GeneDB mRNA 10857 13280 . + . mRNA SPMIT.06 ; systematic_id "SPMIT.06" ; colour "7" ; note "intronic ORF" ; db_xref "UniProtKB:P05511" ; controlled_curation "term=genome organization, protein in cob intron; cv=genome_org; date=20070727 ||| term=orthologous to S. cerevisiae Q0050 and Q0055; date=20070727 ||| term=species distribution, conserved in Fungi; date=20070727 ||| term=species distribution, conserved in Bacteria; date=20070727" ; GO "GO:0005739; mitochondrion
GO:0003677; DNA binding
GO:0004519; endonuclease activity
GO:0008380; RNA splicing
GO:0045333; cellular respiration
GO:0006315; homing of group II introns" ; product "mitochondrial DNA binding endonuclease (predicted)" ;
Spmit GeneDB mRNA 16914 17060 . + . mRNA SPMIT.09 ; systematic_id "SPMIT.09" ; colour "7" ; gene "atp8" ; Alias "atp8" ; db_xref "UniProtKB:P21536" ; GO "GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=species distribution, conserved in Fungi; date=20070212 ||| term=orthologous to S. cerevisiae Q0080; date=20071118" ; primary_name "atp8" ; product "F0-ATPase subunit 8 (predicted)" ;
Spmit GeneDB mRNA 5291 6445 . + . mRNA SPMIT.02 ; systematic_id "SPMIT.02" ; colour "7" ; note "intronic ORF" ; db_xref "UniProtKB:P22191" ; controlled_curation "term=genome organization, protein in cox1 intron-1; cv=genome_org; date=20070727 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Archaea; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; GO "GO:0006314; intron homing
GO:0005739; mitochondrion
GO:0003677; DNA binding
GO:0004519; endonuclease activity" ; product "mitochondrial DNA binding endonuclease (predicted)" ;
Spmit GeneDB mRNA 17806 18030 . + . mRNA SPMIT.10 ; systematic_id "SPMIT.10" ; colour "7" ; gene "atp9" ; Alias "atp9" ; db_xref "UniProtKB:P21537" ; GO "GO:0000276; proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0046933; hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961; hydrogen-transporting ATPase activity, rotational mechanism
GO:0042776; ATP synthesis coupled proton transport (sensu Eukaryota)" ; controlled_curation "term=orthologous to S. cerevisiae Q0130; date=20080204 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820" ; primary_name "atp9" ; product "F0-ATPase subunit 9 (predicted)" ; EC_number "3.6.3.14" ;
Spmit GeneDB mRNA 6845 7817 . + 1 mRNA SPMIT.03 ; systematic_id "SPMIT.03" ; colour "7" ; db_xref "UniProtKB:P22190" ; codon_start "2" ; GO "GO:0006314; intron homing
GO:0005739; mitochondrion
GO:0003677; DNA binding
GO:0004519; endonuclease activity" ; controlled_curation "term=genome organization, protein in cox1 intron-2; cv=genome_org; date=20070727 ||| term=species distribution, conserved in Fungi; date=20100827 ||| term=species distribution, conserved in Eukaryotes; date=20100827 ||| term=species distribution, conserved in Archaea; date=20100827 ||| term=species distribution, conserved in Metazoa; date=20100827 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100827" ; product "mitochondrial DNA binding endonuclease (predicted)" ;
Spmit GeneDB mRNA 4886 8790 . + . mRNA SPMIT.01 ; systematic_id "SPMIT.01" ; colour "2" ; gene "cox1" ; Alias "cox1" ; db_xref "Uniprot:P07657" ; GO "GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration" ; controlled_curation "term=orthologous to S. cerevisiae Q0045; date=20070727 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; primary_name "cox1" ; product "cytochrome c oxidase 1 (predicted)" ;
Spmit GeneDB mRNA 8947 9765 . + . mRNA SPMIT.04 ; systematic_id "SPMIT.04" ; colour "7" ; gene "cox3" ; Alias "cox3" ; controlled_curation "term=orthologous to S. cerevisiae Q0275; date=20070727 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; GO "GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0004129; cytochrome-coxidase activity
GO:0009060; aerobic respiration" ; primary_name "cox3" ; product "cytochrome c oxidase 3 (predicted)" ; EC_number "1.9.3.1" ;
Spmit GeneDB mRNA 18561 19307 . + . mRNA SPMIT.11 ; systematic_id "SPMIT.11" ; colour "7" ; gene "cox2" ; Alias "cox2" ; db_xref "UniProtKB:P21534" ; GO "GO:0005751; respiratory chain complex IV (sensu Eukaryota)
GO:0004129; cytochrome-c oxidase activity
GO:0009060; aerobic respiration" ; controlled_curation "term=orthologous to S. cerevisiae Q0250; date=20070911 ||| term=species distribution, conserved in Bacteria; date=20100820 ||| term=species distribution, conserved in Fungi; date=20100820 ||| term=species distribution, conserved in Eukaryotes; date=20100820 ||| term=species distribution, conserved in Metazoa; date=20100820 ||| term=species distribution, conserved in Vertebrates; date=20100820 ||| term=species distribution, predominantly uniformly single copy (one to one); date=20100820" ; primary_name "cox2" ; product "cytochrome c oxidase 2 (predicted)" ;
Spmit GeneDB mRNA 10173 13862 . + . mRNA SPMIT.05 ; systematic_id "SPMIT.05" ; colour "7" ; gene "cob1 ||| cob ||| SPMIT.05" ; Alias "cob1" ; db_xref "UniProtKB:P05501" ; synonym "cob" ; GO "GO:0005750; mitochondrial respiratory chain complex III
GO:0008121; ubiquinol-cytochrome-c reductase activity
GO:0006122; mitochondrial electron transport, ubiquinol to cytochrome c" ; controlled_curation "term=orthologous to S. cerevisiae Q0105; date=20070727 ||| term=species distribution, conserved in Eukaryotes; date=20070727 ||| term=species distribution, conserved in Bacteria; date=20070727 ||| term=species distribution, conserved in Metazoa; date=20090507 ||| term=species distribution, conserved in Vertebrates; date=20090507" ; primary_name "cob1" ; product "cytochrome b, Cob1 (predicted)" ;
Spmit GeneDB mRNA 15954 16637 . + . mRNA SPMIT.08 ; db_xref "UniProtKB:P21547" ; systematic_id "SPMIT.08" ; colour "7" ; controlled_curation "term=species distribution, conserved in Fungi; date=20070727 ||| term=orthologous to S. cerevisiae Q0140; date=20070727" ; GO "GO:0005763; mitochondrial small ribosomal subunit
GO:0006412; translation" ; product "mitochondrial ribosomal small subunit (predicted)" ;